Citrus Sinensis ID: 008848
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | 2.2.26 [Sep-21-2011] | |||||||
| Q84P17 | 727 | Probable acyl-activating | yes | no | 0.985 | 0.746 | 0.678 | 0.0 | |
| F4KBF3 | 721 | Probable acyl-activating | no | no | 0.965 | 0.737 | 0.481 | 1e-139 | |
| A1U2S9 | 649 | Acetyl-coenzyme A synthet | yes | no | 0.675 | 0.573 | 0.278 | 1e-28 | |
| A8FUF1 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.658 | 0.558 | 0.276 | 2e-28 | |
| Q15YI8 | 646 | Acetyl-coenzyme A synthet | yes | no | 0.633 | 0.540 | 0.293 | 3e-28 | |
| Q88EH6 | 653 | Acetyl-coenzyme A synthet | yes | no | 0.658 | 0.555 | 0.277 | 4e-28 | |
| A9KY56 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.662 | 0.561 | 0.267 | 7e-28 | |
| A6WM52 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.662 | 0.561 | 0.267 | 2e-27 | |
| A3D3E8 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.662 | 0.561 | 0.267 | 2e-27 | |
| A4Y7Y7 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.664 | 0.563 | 0.262 | 2e-27 |
| >sp|Q84P17|AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/547 (67%), Positives = 445/547 (81%), Gaps = 4/547 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPY 546
DE GVPY
Sbjct: 538 DENGVPY 544
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May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|F4KBF3|AAE17_ARATH Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 263/546 (48%), Positives = 358/546 (65%), Gaps = 14/546 (2%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
Y +V+ A AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNA-RNLRGVEYVAAEKPAGAYT 352
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 353 NILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASL 412
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F ST
Sbjct: 413 INGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGST 472
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L IL
Sbjct: 473 GEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFIL 532
Query: 540 DECGVP 545
DE P
Sbjct: 533 DEDSNP 538
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|A1U2S9|ACSA_MARAV Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1 | Back alignment and function description |
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Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/416 (27%), Positives = 185/416 (44%), Gaps = 44/416 (10%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVV--FREAPKCILDRTDKSKHG 164
P++ RA + ++++ +VE P +W K I + F + D + S
Sbjct: 11 PEVAERALVNKSQYEEMYRQ-SVEDPNTFWGEHGKRIDWIKPFTKVKNSTYDYNNLSIK- 68
Query: 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W VLN + CL H + + AI++ D D S +TY+EL E+ AN
Sbjct: 69 --WFEDGVLNASANCL--DRHLEQRGDQTAIIFEGD--DPSVSRNVTYRELYEETCKFAN 122
Query: 225 AL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283
L D KGD + I MPM V + LA G + + F+ +A R+ K++
Sbjct: 123 VLKDQGVKKGDVVTIYMPMIVETAVAMLACARIGAIHSVVFGGFSPEALAARIVNGKSRF 182
Query: 284 IFTQDFILRGGRKFPLYSKVLGAAPL-------KAIVLPAIGNDVGIPLRE-QDLSWKDF 335
+ T D LRGGR PL V A K IV+ GND +P E +DL ++D
Sbjct: 183 VITADEGLRGGRAIPLKKNVDSALKHEDDAKVDKVIVVSRTGNDQ-VPWTEGRDLRYEDL 241
Query: 336 L--SSVDYHPRP-NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI 392
+ +S + P P N P++ +L++SG+TG PK + T + + ++
Sbjct: 242 MKNASAECQPEPMNAEDPLF--------MLYTSGSTGAPKGVLHTTGGYMVYASMTHQYV 293
Query: 393 -DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVT 447
D GDVY + GWV G IL+ NGA L++G P G+ V V
Sbjct: 294 FDYHDGDVYWCTADFGWVTGHSYILYGPLANGAITLLFEGVPNYPDSSRMGQVVDKHKVN 353
Query: 448 VLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501
+L T P+ ++A + +C++G ++ S GE ++ + W WY+ +I
Sbjct: 354 ILYTAPTAIRALMAQGESCMDGTTRGSLKLLGSVGEP--INPEAW----EWYHRVI 403
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Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A8FUF1|ACSA_SHESH Acetyl-coenzyme A synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/402 (27%), Positives = 179/402 (44%), Gaps = 39/402 (9%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECC 179
+++Q+ V +PE +W + I + P + +T H + W LN + C
Sbjct: 26 KMYQESIV-NPEGFWREHGQRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASANC 81
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
L H K+ + VAI+W D D +TY EL V ANAL + +GD + +
Sbjct: 82 L--DRHLEKDSDKVAIIWEGD--DAKDQRTITYGELHSDVCKFANALRSQGVRRGDIVTV 137
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM A ++ LA G V + F+ IA+R+ K+K I T D +RGGR P
Sbjct: 138 YMPMVPEAAVVMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITADEGVRGGRIIP 197
Query: 299 LYSKVLGAAPL-------KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
L + + A K IVL G DV + +D+ W+ + + H P
Sbjct: 198 LKANIDEALSHPDVDCVEKVIVLERTGGDVNW-VEGRDIKWESLMDTASEHCIPEEMG-- 254
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVM 410
+ + +L++SG+TG PK + T + A ++ D K G+VY ++GW+
Sbjct: 255 ---AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYAAMTHEYVFDYKDGEVYWCTADVGWIT 311
Query: 411 G-PVILFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAW--RNTNC 464
G +++ NGAT+ +++G P G+ V V +L T P+L++A
Sbjct: 312 GHSYMVYGPLANGATVLIHEGVPNYPTPARLGEMVDRHKVNILYTAPTLIRALMAEGKEQ 371
Query: 465 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESC 504
D + +R S GE ++ + W WYN +I E C
Sbjct: 372 FADFDGSSLRIMGSVGEP--INPEAW----RWYNEVIGHEHC 407
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Shewanella sediminis (strain HAW-EB3) (taxid: 425104) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q15YI8|ACSA_PSEA6 Acetyl-coenzyme A synthetase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 170/389 (43%), Gaps = 40/389 (10%)
Query: 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGG-TWLPGSVLNI 175
P R++ + +VE PE +W K + V + P I + + + H W LN+
Sbjct: 20 PADYARMYAE-SVEQPEVFWAEQAKSLDWV--KTPTKIKNTSFDAHHVSIKWFEDGELNV 76
Query: 176 AECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGD 234
A C+ H K + A +W D D + +++TY L ++V +AN L + KGD
Sbjct: 77 AYNCI--DRHLAKRGHVTAFIWEGD--DPHSHDIITYHRLHDEVAKIANGLRKLGVGKGD 132
Query: 235 AIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGG 294
+AI MPM +AV LA G V I F+ IA R+ +AK + T D LR G
Sbjct: 133 RVAIYMPMIPQAVYAMLACARIGAVHTVIFGGFSPNAIADRVNNCQAKVLITADEGLRAG 192
Query: 295 RKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347
+ PL V A + + IV G+ V + D+ W D P
Sbjct: 193 KHIPLKDNVDTALAEHDCPSMEQVIVFKHTGSHVS--WGKDDVWWHDLTDGCSTDCPPE- 249
Query: 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI------DLKVGDVYC 401
V N D + IL++SG+TG+PK + T + WA I D K GD+Y
Sbjct: 250 ---VMNAEDPLF-ILYTSGSTGQPKGVVHTTGGYLL-----WASITHKYVFDYKPGDIYW 300
Query: 402 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLE---RSFGKFVQDAGVTVLGTVPSLVK 457
++GWV G I++ NGAT +++G P R G+ V V +L T P+ ++
Sbjct: 301 CAADVGWVTGHSYIVYGPLANGATSVMFEGVPTYPDVRRIGQIVDKHKVNILYTAPTAIR 360
Query: 458 AWRNTNCL--EGLDWTKIRSFASTGETSN 484
A EG+ +R S GE N
Sbjct: 361 ALMAHGDFPTEGISGESLRLLGSVGEPIN 389
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Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) (taxid: 342610) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 178/396 (44%), Gaps = 33/396 (8%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGG- 165
P++ D T ++Q+ +V +P+ +W + I + P + +T H
Sbjct: 11 PEVAATTLTDEATYKAMYQQ-SVINPDGFWREQAQRIDWI---KPFTKVKQTSFDDHHVD 66
Query: 166 -TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + +AI+W D D S +TY+EL EQV AN
Sbjct: 67 IKWFADGTLNVSSNCL--DRHLEERGDQLAIIWEGD--DPSEHRNITYRELHEQVCKFAN 122
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283
AL +GD + I MPM AV+ LA G + + F+ +A R+ K+K
Sbjct: 123 ALRGQDVHRGDVVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFSPEALAGRIIDCKSKV 182
Query: 284 IFTQDFILRGGRKFPLYSKV-------LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336
+ T D +RGGR+ PL + V ++ K IV G D+ + +D+ ++D +
Sbjct: 183 VITADEGVRGGRRTPLKANVDLALTNPETSSVQKIIVCKRTGGDIAW-HQHRDIWYEDLM 241
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLK 395
H P + + IL++SG+TG+PK + T + A + D +
Sbjct: 242 KVASSHCAPKEMG-----AEEALFILYTSGSTGKPKGVLHTTGGYLVYAALTHERVFDYR 296
Query: 396 VGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP----LERSFGKFVQDAGVTVLG 450
G+VY ++GWV G I++ NGAT L++G P + R K V V +L
Sbjct: 297 PGEVYWCTADVGWVTGHSYIVYGPLANGATTLLFEGVPNYPDITR-VSKIVDKHKVNILY 355
Query: 451 TVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSN 484
T P+ ++A +EG D + +R S GE N
Sbjct: 356 TAPTAIRAMMAEGQAAVEGADGSSLRLLGSVGEPIN 391
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Pseudomonas putida (strain KT2440) (taxid: 160488) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A9KY56|ACSA_SHEB9 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS195) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 179/403 (44%), Gaps = 38/403 (9%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL +V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHAEVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + ++D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGIVDW-VEDRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESC 504
+ D + +R S GE ++ + W WY+ +I E C
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHC 407
|
Shewanella baltica (strain OS195) (taxid: 399599) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A6WM52|ACSA_SHEB8 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 177/403 (43%), Gaps = 38/403 (9%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESC 504
+ D + +R S GE ++ + W WY+ +I E C
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHC 407
|
Shewanella baltica (strain OS185) (taxid: 402882) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A3D3E8|ACSA_SHEB5 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/403 (26%), Positives = 177/403 (43%), Gaps = 38/403 (9%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESC 504
+ D + +R S GE ++ + W WY+ +I E C
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHC 407
|
Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A4Y7Y7|ACSA_SHEPC Acetyl-coenzyme A synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 177/404 (43%), Gaps = 38/404 (9%)
Query: 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAE 177
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 23 QYKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASA 79
Query: 178 CCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAI 236
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 80 NCL--DRHLSEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIV 135
Query: 237 AIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK 296
I MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR
Sbjct: 136 TIYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVVITSDEGMRGGRA 195
Query: 297 FPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 349
PL + A + K IVL G + + +D+ W L + H +P
Sbjct: 196 IPLKRNIDDALNHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLLETASEHCQPEEMG 254
Query: 350 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGW 408
+ + +L++SG+TG PK + T + + ++ D K G+VY ++GW
Sbjct: 255 -----AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGW 309
Query: 409 VMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNT 462
+ G +++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 310 ITGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGK 369
Query: 463 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESC 504
+ D + +R S GE ++ + W WY+ +I E C
Sbjct: 370 QHFDQFDGSTLRIMGSVGEP--INPEAW----RWYHEVIGHEHC 407
|
Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) (taxid: 319224) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | ||||||
| 225435726 | 727 | PREDICTED: acetyl-coenzyme A synthetase | 0.990 | 0.751 | 0.732 | 0.0 | |
| 380042388 | 727 | acyl-activating enzyme 14 [Cannabis sati | 0.983 | 0.745 | 0.735 | 0.0 | |
| 380042368 | 723 | acyl-activating enzyme 4, partial [Canna | 0.983 | 0.749 | 0.730 | 0.0 | |
| 380042386 | 715 | acyl-activating enzyme 13 [Cannabis sati | 0.963 | 0.742 | 0.700 | 0.0 | |
| 449503439 | 725 | PREDICTED: probable acyl-activating enzy | 0.987 | 0.750 | 0.677 | 0.0 | |
| 449448834 | 725 | PREDICTED: probable acyl-activating enzy | 0.987 | 0.750 | 0.677 | 0.0 | |
| 449503441 | 725 | PREDICTED: probable acyl-activating enzy | 0.985 | 0.748 | 0.667 | 0.0 | |
| 145336784 | 727 | acyl-activating enzyme 18 [Arabidopsis t | 0.985 | 0.746 | 0.678 | 0.0 | |
| 449448832 | 725 | PREDICTED: probable acyl-activating enzy | 0.985 | 0.748 | 0.666 | 0.0 | |
| 12323178 | 2655 | acetyl-CoA synthetase, putative; 45051-3 | 0.981 | 0.203 | 0.674 | 0.0 |
| >gi|225435726|ref|XP_002285701.1| PREDICTED: acetyl-coenzyme A synthetase [Vitis vinifera] gi|297746451|emb|CBI16507.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/546 (73%), Positives = 470/546 (86%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MG + EVGV +L+K GL +EEA+EF++ILK + ++G D E+WRE+VAR+VL P HP
Sbjct: 1 MGMRVAEVGVGELVKAGLSMEEAQEFERILKAAVGGARGSDPSEVWREVVARRVLSPSHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
HGLH+LV++SVY +WD SI+GPPLYWFPSL +S TNLG +E +GP+LLG +YKDPITS
Sbjct: 61 HGLHRLVFHSVYAEWDESIRGPPLYWFPSLYESMHTNLGRLMETYGPRLLGLSYKDPITS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
+ LFQKF+V++ E YW + LKE+SV+F AP+CILD TDKSKHGGTWLPG+VLNIAECCL
Sbjct: 121 YSLFQKFSVQNLEVYWSMVLKELSVLFHRAPRCILDTTDKSKHGGTWLPGAVLNIAECCL 180
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LP ++ RK DN++A+VWR++ D+S VN +T KELREQVM+VAN LD FSKGDAIAIDM
Sbjct: 181 LPVSYPRKHDNSLAVVWRDEGNDDSPVNRLTLKELREQVMMVANVLDATFSKGDAIAIDM 240
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAI+LAG+VVVSIADSFAA+EIATRL VSKAKGIFTQDFI+RGGRKFPLY
Sbjct: 241 PMTVHAVIIYLAIVLAGFVVVSIADSFAAKEIATRLHVSKAKGIFTQDFIVRGGRKFPLY 300
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ AAP K IVLPAIG DV + LREQDLSWKDFLS D+ PRPN YSPVY P+DAV N
Sbjct: 301 SRVVEAAPHKVIVLPAIGTDVDVQLREQDLSWKDFLSHADHLPRPNNYSPVYQPIDAVTN 360
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTG+PKAIPWTQ+S IR +A+ WA I+++VGDV+CWPTNLGWVMGP IL++SFL
Sbjct: 361 ILFSSGTTGDPKAIPWTQVSPIRSSADAWAQINIQVGDVFCWPTNLGWVMGPTILYASFL 420
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GA LALY GSPL+R FGKFVQDAGVTVLGTVPSLVK W+NT C+EGLDWTKI+SFASTG
Sbjct: 421 TGAALALYHGSPLDRGFGKFVQDAGVTVLGTVPSLVKTWKNTGCMEGLDWTKIKSFASTG 480
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+A+Y IIE CGGTEL+S+YIQGS+LQPQAFG FSTA MT G VILD
Sbjct: 481 ETSNVDDDLWLSSRAYYKPIIECCGGTELASSYIQGSVLQPQAFGTFSTAAMTTGFVILD 540
Query: 541 ECGVPY 546
E GVPY
Sbjct: 541 ENGVPY 546
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042388|gb|AFD33358.1| acyl-activating enzyme 14 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/545 (73%), Positives = 462/545 (84%), Gaps = 3/545 (0%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPWHPHG
Sbjct: 4 KSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPWHPHG 63
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 64 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 123
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLNIAECCLL
Sbjct: 124 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNIAECCLL 183
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 184 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 243
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 244 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 303
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 304 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVGTRSR--NYSPCYQPVDTLINI 361
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 362 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 421
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 422 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 481
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 482 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 541
Query: 542 CGVPY 546
G P+
Sbjct: 542 HGNPF 546
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042368|gb|AFD33348.1| acyl-activating enzyme 4, partial [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/545 (73%), Positives = 460/545 (84%), Gaps = 3/545 (0%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+ LKPWHPHG
Sbjct: 1 NSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRALKPWHPHG 60
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 61 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 120
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLN+AECCLL
Sbjct: 121 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNVAECCLL 180
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 181 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 240
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 241 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 300
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 301 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVG--TRSRNYSPCYQPVDTLINI 358
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 359 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 418
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 419 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 478
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 479 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 538
Query: 542 CGVPY 546
G P+
Sbjct: 539 HGNPF 543
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042386|gb|AFD33357.1| acyl-activating enzyme 13 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/544 (70%), Positives = 450/544 (82%), Gaps = 13/544 (2%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGV+DL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPW
Sbjct: 4 KSISEVGVDDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPW---- 59
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
SVY WD S KGPP YWFPSL SK TNLG +E HGP LLG YKDPITS+
Sbjct: 60 -------SVYAHWDVSSKGPPPYWFPSLYHSKDTNLGRLMEKHGPSLLGPLYKDPITSYS 112
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
LFQKF+VEHPE YW IALKE+SV F+E PKCILD++DKSKHGG+WLPG+VLNIAECCLLP
Sbjct: 113 LFQKFSVEHPEVYWSIALKELSVSFQEEPKCILDKSDKSKHGGSWLPGAVLNIAECCLLP 172
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
+++ RK+D+++AIVWR++ D+S+VNL+T K+LREQV+ VA +LD MFSKGDAIA+DMPM
Sbjct: 173 TSYPRKDDDSLAIVWRDEGSDDSSVNLITLKQLREQVISVAKSLDAMFSKGDAIAMDMPM 232
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
T AVIIYLAIIL+G VVVSIADSFA +EIA+RL VS+AK IFTQDFILRGGRKFPLYS+
Sbjct: 233 TANAVIIYLAIILSGLVVVSIADSFAPKEIASRLHVSQAKAIFTQDFILRGGRKFPLYSR 292
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ AAP + IVLPA G+++GI LREQD+SW DFLSSV R YSP Y PVD+++NIL
Sbjct: 293 VVEAAPDRVIVLPATGSNIGIQLREQDMSWGDFLSSVGTRSRK--YSPCYQPVDSLINIL 350
Query: 363 FSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
FSSGTTGEPKAIPWT LS IRC+++ WA++D+KVGDV CWPTNLGW +GP ILF+ FL+G
Sbjct: 351 FSSGTTGEPKAIPWTHLSPIRCSSDFWAYMDIKVGDVVCWPTNLGWALGPFILFTCFLSG 410
Query: 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482
A LALY GSPL R FGKFVQDA VT LGTVPSLVK W+NT C++GLDWTKI+SFASTGET
Sbjct: 411 AVLALYHGSPLGRGFGKFVQDASVTKLGTVPSLVKTWKNTQCMKGLDWTKIKSFASTGET 470
Query: 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542
SNVDDDLWLSS+A+Y +IE CGGTEL+S+YIQGSLLQPQAFGAF+TATMT VI+DE
Sbjct: 471 SNVDDDLWLSSQAYYKPVIECCGGTELASSYIQGSLLQPQAFGAFNTATMTTSFVIIDEH 530
Query: 543 GVPY 546
G PY
Sbjct: 531 GNPY 534
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503439|ref|XP_004162003.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/546 (67%), Positives = 445/546 (81%), Gaps = 2/546 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH L+YYSVY +W+ S GPP YWFPS++QSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHHLLYYSVYANWNISSNGPPPYWFPSINQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSN--VRWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQLS IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQLSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGHGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPY 546
E G+PY
Sbjct: 539 EHGIPY 544
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448834|ref|XP_004142170.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/546 (67%), Positives = 445/546 (81%), Gaps = 2/546 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSNV--RWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGYGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPY 546
E G+PY
Sbjct: 539 EHGIPY 544
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503441|ref|XP_004162004.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/545 (66%), Positives = 451/545 (82%), Gaps = 2/545 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GLKL EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLKLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVP 545
E G+P
Sbjct: 539 EHGIP 543
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145336784|ref|NP_175929.3| acyl-activating enzyme 18 [Arabidopsis thaliana] gi|75297963|sp|Q84P17.1|AEE18_ARATH RecName: Full=Probable acyl-activating enzyme 18, peroxisomal gi|29893268|gb|AAP03028.1| acyl-activating enzyme 18 [Arabidopsis thaliana] gi|332195104|gb|AEE33225.1| acyl-activating enzyme 18 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/547 (67%), Positives = 445/547 (81%), Gaps = 4/547 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPY 546
DE GVPY
Sbjct: 538 DENGVPY 544
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448832|ref|XP_004142169.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/545 (66%), Positives = 450/545 (82%), Gaps = 2/545 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVP 545
E G+P
Sbjct: 539 EHGIP 543
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12323178|gb|AAG51574.1|AC027034_20 acetyl-CoA synthetase, putative; 45051-31547 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/547 (67%), Positives = 443/547 (80%), Gaps = 6/547 (1%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKF DAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKF--DAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 475
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 476 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 535
Query: 540 DECGVPY 546
DE GVPY
Sbjct: 536 DENGVPY 542
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | ||||||
| TAIR|locus:2035721 | 727 | AAE18 "acyl-activating enzyme | 0.985 | 0.746 | 0.678 | 6.7e-207 | |
| TAIR|locus:2178277 | 721 | AAE17 "acyl-activating enzyme | 0.963 | 0.736 | 0.486 | 2.9e-135 | |
| TIGR_CMR|BA_2553 | 646 | BA_2553 "acetoacetyl-CoA synth | 0.791 | 0.674 | 0.273 | 1.3e-33 | |
| DICTYBASE|DDB_G0277815 | 674 | acsA "acetyl-CoA synthetase" [ | 0.711 | 0.581 | 0.254 | 1.6e-26 | |
| TIGR_CMR|CPS_3955 | 648 | CPS_3955 "acetyl-CoA synthetas | 0.680 | 0.578 | 0.265 | 1.1e-25 | |
| TIGR_CMR|SO_2743 | 650 | SO_2743 "acetyl-coenzyme A syn | 0.656 | 0.556 | 0.266 | 1.2e-24 | |
| TIGR_CMR|SPO_1813 | 654 | SPO_1813 "acetyl-coenzyme A sy | 0.673 | 0.567 | 0.259 | 2.1e-24 | |
| UNIPROTKB|P27550 | 652 | acs [Escherichia coli K-12 (ta | 0.575 | 0.486 | 0.290 | 1.6e-23 | |
| MGI|MGI:2685720 | 682 | Acss3 "acyl-CoA synthetase sho | 0.666 | 0.538 | 0.272 | 4e-23 | |
| ZFIN|ZDB-GENE-050320-139 | 693 | acss1 "acyl-CoA synthetase sho | 0.700 | 0.556 | 0.247 | 4.1e-23 |
| TAIR|locus:2035721 AAE18 "acyl-activating enzyme 18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2001 (709.4 bits), Expect = 6.7e-207, P = 6.7e-207
Identities = 371/547 (67%), Positives = 445/547 (81%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPY 546
DE GVPY
Sbjct: 538 DENGVPY 544
|
|
| TAIR|locus:2178277 AAE17 "acyl-activating enzyme 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
Identities = 266/547 (48%), Positives = 361/547 (65%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGA-APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV 358
Y +V+ A APL AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPL-AIVVPARGSSCRMKLREKDLSWNNFLGNAR-NLRGVEYVAAEKPAGAY 351
Query: 359 VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 352 TNILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYAS 411
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F S
Sbjct: 412 LINGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGS 471
Query: 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVI 538
TGE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L I
Sbjct: 472 TGEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFI 531
Query: 539 LDECGVP 545
LDE P
Sbjct: 532 LDEDSNP 538
|
|
| TIGR_CMR|BA_2553 BA_2553 "acetoacetyl-CoA synthase, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 1.3e-33, P = 1.3e-33
Identities = 130/475 (27%), Positives = 216/475 (45%)
Query: 86 WFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISV 145
WFP+ + + T L + K LG Y+D + F ++E +W A K +
Sbjct: 6 WFPTEEYKEKTRLYGWM-----KSLG--YED----YETFYNKSIEETAWFWGEAEKVVGY 54
Query: 146 VFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDES 205
+ + +LD + + W G N+ E L + +D T + +
Sbjct: 55 QWMKPYTEVLDLQNGTPFA-QWYNGGTCNVVESVL---SRWLADDETRTQPALQYEGENG 110
Query: 206 AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
TY+EL V AN L KGD + I MPM V+ LA++ G ++ I
Sbjct: 111 TSKSFTYEELDSWVSRAANGLKHAGIEKGDRVTIYMPMIPETVVAMLAVMKIGAIISPIF 170
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL--KAIVLPAIGN 319
FA+ + TR++ + +K I T D R G+ L +V A P K +++ GN
Sbjct: 171 SGFASDAVMTRVQAAGSKMIITADGFSRRGKIVSLKDEVDKACEHCPTVEKVVIVRHAGN 230
Query: 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQL 379
D P D SW S+++ +P ++ + D ++ ++++SGTTG+PK T
Sbjct: 231 DF-TP-HNYDFSW----STLEKE-KPFVHAEEMHSDDPLM-LIYTSGTTGKPKGTVHTHA 282
Query: 380 S-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP----LE 434
++ + +++K GD W T++GW+MGP +LF S +NGAT+ +Y+G P +
Sbjct: 283 GFPLKAAFDAGFGMNIKQGDRVLWVTDMGWMMGPFLLFGSLINGATMVMYEGVPDFPKAD 342
Query: 435 RSFGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492
R + + V +T LG P+L++A + + + FASTGE N D +WL
Sbjct: 343 RLW-ETVDKYEITHLGISPTLIRALMAKGDEYVNKHSLKSLEVFASTGEPWNPDPWMWLF 401
Query: 493 SKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP 545
+ I GGTE+S L++P A +F+ + V+LD+ G P
Sbjct: 402 ETVGKSNVPICNYSGGTEISGGIFGNVLIKPIAPISFNASLPGMAAVVLDDQGNP 456
|
|
| DICTYBASE|DDB_G0277815 acsA "acetyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 326 (119.8 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 106/416 (25%), Positives = 189/416 (45%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P + + + + K ++E P +W+ KE F + + K +
Sbjct: 21 PSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKEFLTWFSDYTT--VQHGSFEKGDIS 78
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W +N++ C+ H ++ + VAI++ D +E+ V +TY+E+ E+V ++N L
Sbjct: 79 WFLNGKINVSYNCI--DRHLKENADKVAILFEGD--EETMVKKVTYREMFEEVCRLSNLL 134
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
++ KGD +AI +P T A+ LA G + I F I +R+ +K + I
Sbjct: 135 ISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFGYESIVSRVHDAKCRVII 194
Query: 286 TQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLS---WKDFLSSVDY 341
T D LRGGR PL K+ K + + + G P + S W D + +D+
Sbjct: 195 TADEGLRGGRYIPLKEKIDQVVQHCKLVQHVLVFKNTGRPTITFNPSIDIWADE-AMLDH 253
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
P Y PV+ + + IL++SG+TG PK + TQ + A ++ D DVY
Sbjct: 254 RP---YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSDVY 310
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLV 456
++GW+ G I++ NGAT +++G+PL + + + VQ +T T P+ +
Sbjct: 311 ACMADVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPTAI 370
Query: 457 KAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTE 508
++ + + D + +R S GE N + W ++ AI+++ TE
Sbjct: 371 RSLMKFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTE 426
|
|
| TIGR_CMR|CPS_3955 CPS_3955 "acetyl-CoA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 108/407 (26%), Positives = 179/407 (43%)
Query: 108 KLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTW 167
K + D T +++K ++E P+ +W KE ++ P + + D W
Sbjct: 13 KAKAHTHIDAATYDAMYKK-SIEQPDEFWGEQAKEFIDWYK--PWDSVSKVDLKNSEINW 69
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWR-EDRCDESAVNLMTYKELREQVMLVANAL 226
G LN++ C+ H + N AI++ +D D+S V TY+EL + V AN L
Sbjct: 70 FSGGKLNVSYNCI--DRHLATKANDTAIIFEGDDPNDDSKV---TYQELHDHVCRFANLL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD + I MPM LA G + + F+ I R+ + K +
Sbjct: 125 KERGVKKGDRVCIYMPMIPEVGYAMLACARIGAIHSVVFGGFSTESIKARVLDADCKVVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
T D LRGG++ PL S V A I P + + + + D++W D + ++Y
Sbjct: 185 TADQSLRGGKRIPLKSNVDAAV----IDCPNVHSVIVVARTGGDVAWNDKVD-INYEEAV 239
Query: 346 NYYSPVYNP--VDAV--VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
S + P +DA + +L++SG+TG PK + T I A ++ D K G+VY
Sbjct: 240 AKQSAICEPEVMDAEDPLFVLYTSGSTGTPKGVVHTCGGYILYAAMTHKYVFDYKEGEVY 299
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAG---VTVLGTVPSLV 456
+ GW+ G I + NGAT +++G P G+F Q V V T P+ +
Sbjct: 300 WCTADAGWITGHSYIFYGPLANGATTLVFEGVPTYPDAGRFWQVCEKHKVNVFYTAPTAI 359
Query: 457 KAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501
+A + + + D + +R + GE N + W WY ++
Sbjct: 360 RALMSIGDDLVNQADLSSLRLLGTVGEPIN--PEAW----HWYYEVV 400
|
|
| TIGR_CMR|SO_2743 SO_2743 "acetyl-coenzyme A synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 107/401 (26%), Positives = 177/401 (44%)
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECCL 180
++Q+ ++ +PE +W K I + P + +T H + W LN + CL
Sbjct: 27 MYQE-SIVNPEGFWREHGKRIDWI---KPYTKIKKTTFDDHNLSINWFYDGTLNASANCL 82
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
H + VAI+W D +E +TY EL QV ANAL + +GD + I
Sbjct: 83 --DRHLAAHSDRVAIIWEGDNANEQ--RKITYGELHTQVCKFANALRSQGVRRGDIVTIY 138
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR PL
Sbjct: 139 MPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKIVITSDEGMRGGRAIPL 198
Query: 300 YSKVLGAA--P-----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352
+ A P K IVL G + + +D+ W + + H
Sbjct: 199 KRNIDDALKHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLVETASEHCAVEEMG-AE 256
Query: 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG 411
+P+ +L++SG+TG PK + T + + ++ D K G++Y ++GW+ G
Sbjct: 257 DPLF----LLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKPGEIYWCTADVGWITG 312
Query: 412 -PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTNCL 465
+++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 313 HSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGKQHF 372
Query: 466 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESC 504
+ + + +R S GE N + W WY+ +I E C
Sbjct: 373 DKYNGSSLRIMGSVGEPIN--PEAW----RWYHEVIGHEHC 407
|
|
| TIGR_CMR|SPO_1813 SPO_1813 "acetyl-coenzyme A synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 106/409 (25%), Positives = 179/409 (43%)
Query: 110 LGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVV--FREAPKCILDRTDKSKHGGTW 167
+ RA+ + T R++ ++ PE +W K + + F + + + S + W
Sbjct: 19 VARAHVNADTYDRMYAA-SMADPEGFWAEQGKRVDWIKPFTQVKDVNYNFGEVSIN---W 74
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
LN+A C+ H + AI+W D E+A ++ TYKEL V +AN L+
Sbjct: 75 YADGTLNVAANCI--DRHLATRGDQTAIIWEPDSPTEAAKHI-TYKELHGSVCRMANILE 131
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
++ KGD + I +PM A LA G + + F+ +A R+ AK + T
Sbjct: 132 SLGVRKGDRVVIYLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARVNGCDAKVVIT 191
Query: 287 QDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341
D RGGRK PL S A +K +V+ G + ++D + +
Sbjct: 192 ADEAPRGGRKTPLKSNADAALLHCKDTVKCLVVKRTGGQTTW-IADRDFDYNEMALEAS- 249
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGD 398
+Y +P + + IL++SG+TG+PK + T + A H D GD
Sbjct: 250 ----DYCAPAEMGAEDPLFILYTSGSTGQPKGVVHTTGGYLVYAA--MTHEITFDYHDGD 303
Query: 399 VYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAG---VTVLGTVPS 454
+Y ++GWV G I++ NGAT +++G P G+F + V T P+
Sbjct: 304 IYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWEVCAKHKVNQFYTAPT 363
Query: 455 LVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501
++A + T+ +E D + +R + GE N + W WYN ++
Sbjct: 364 AIRALMGQGTSFVEKHDLSDLRLLGTVGEPIN--PEAW----NWYNEVV 406
|
|
| UNIPROTKB|P27550 acs [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 100/344 (29%), Positives = 148/344 (43%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++YKEL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DASQSKHISYKELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAA--PL-----KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A P +VL G + +DL W D +
Sbjct: 185 TSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQ-EGRDLWWHDLVEQ 243
Query: 339 V-DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKV 396
D H N D + IL++SG+TG+PK + T + A + ++ D
Sbjct: 244 ASDQHQAEEM-----NAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHP 297
Query: 397 GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTV 452
GD+Y ++GWV G +L+ GAT +++G P + V V +L T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTA 357
Query: 453 PSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494
P+ ++A +EG D + +R S GE N + W K
Sbjct: 358 PTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKK 401
|
|
| MGI|MGI:2685720 Acss3 "acyl-CoA synthetase short-chain family member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 4.0e-23, P = 4.0e-23
Identities = 110/404 (27%), Positives = 187/404 (46%)
Query: 128 TVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNH-R 186
+V PE +W A ++IS ++ K + R S +W +LNI C H
Sbjct: 64 SVADPERFWGKAAEQISW-YKPWTKTLESRYPPST---SWFVEGMLNI--CYNAIDRHIE 117
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+ + +AI++ D A ++YKE+ EQV +A L KGD + I MPM +
Sbjct: 118 NGQGDKIAIIYDSPVTDTKAT--ISYKEVLEQVSKLAGVLVKQGVKKGDTVVIYMPMIPQ 175
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRK---FPLYSK 302
A+ LA G + I FA++E++TR+ +K K + T F + GRK PL +
Sbjct: 176 AIYTMLACARIGAIHSLIFGGFASKELSTRIDHAKPKVVVTASFGIEPGRKVEYIPLLEE 235
Query: 303 VL--GAAPLKAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
L G +++ + N +PL +DL W++ ++ H PV + + +
Sbjct: 236 ALRIGQHRPDRVLIYSRPNMEKVPLMSGRDLDWEEEMAKAQSHD----CVPVLS--EHPL 289
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID---LKVGDVYCWPTNLGWVMG-PVIL 415
IL++SGTTG PK + + + W LK G+V+ ++LGWV+G I
Sbjct: 290 YILYTSGTTGLPKGV--VRPTGGYAVMLNWTMSSIYGLKPGEVWWAASDLGWVVGHSYIC 347
Query: 416 FSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLD 469
+ L+G T LY+G P+ ++ + + + GV L T P+ ++A R + G
Sbjct: 348 YGPLLHGNTTVLYEGKPVGTPDAGAYFRVLAEHGVAALFTAPTAIRAIRQQDPGAALGKQ 407
Query: 470 W--TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ T+ ++ GE +V+ W S K + +++ TE S
Sbjct: 408 YSLTRFKTLFVAGERCDVETLEW-SKKVFRVPVLDHWWQTETGS 450
|
|
| ZFIN|ZDB-GENE-050320-139 acss1 "acyl-CoA synthetase short-chain family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 4.1e-23, P = 4.1e-23
Identities = 105/424 (24%), Positives = 200/424 (47%)
Query: 89 SLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFR 148
SL +S ++ L H L GR Y D L++ +V+ PE +W KE + +
Sbjct: 40 SLSRSSISAAQLDLSSH---LSGRNYAD------LYE-LSVKDPENFWGSIAKE-RLAWT 88
Query: 149 EAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVN 208
+ + D D S W G LN++ CL H + + VA++W +D +
Sbjct: 89 KPFDQVSD-CDISSGKINWFLGGQLNVSVNCL--DVHVANDPSRVALIWEKD--EPGTEE 143
Query: 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267
+TY+EL E +AN L + +G+ +AI MP++ AV LA G V + F
Sbjct: 144 RITYRELLEMTCRLANTLKSHGVQRGERVAIYMPVSPMAVAAMLACARIGAVHTVVFAGF 203
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS---KVLGAAPLKAIVLPAIGNDVGIP 324
++ +A R++ ++ K + T + +RGGR F L S K + + P V A + +P
Sbjct: 204 SSEALAGRIQDAQCKFVITCNQGVRGGRVFDLKSTVDKAVKSCPSVRHVFVAKRTNNSVP 263
Query: 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC 384
+ + D+ ++ ++ P P+ + + ++ +L++SG+TG+PK I TQ +
Sbjct: 264 MGKLDIPLEEVMAGQSSECAPE---PMES--EEMLFMLYTSGSTGKPKGIVHTQAGYLLY 318
Query: 385 TAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF-- 440
+ ++ D GDV+ ++GW+ G +++ NGAT L++ +P+ + G++
Sbjct: 319 ASLTHQYVFDYTPGDVFGCVADIGWITGHSYVVYGPLCNGATSVLFESTPVYPNPGRYWE 378
Query: 441 -VQDAGVTVLGTVPSLVKAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497
VQ + P+ ++ + ++ D + +++ AS GE N + W W+
Sbjct: 379 TVQRLRINQFYGAPTAIRLLLKYEESWVKKYDRSSLKTLASVGEPIN--HEAW----DWF 432
Query: 498 NAII 501
+ ++
Sbjct: 433 HNVV 436
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84P17 | AEE18_ARATH | 6, ., 2, ., 1, ., - | 0.6782 | 0.9854 | 0.7469 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00024773001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (727 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 551 | |||
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.0 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.0 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 7e-49 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 4e-47 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-42 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 4e-39 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-36 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 8e-32 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 1e-29 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 4e-29 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 1e-27 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 9e-27 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 1e-25 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 2e-20 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 5e-20 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 8e-19 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-18 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 6e-17 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-16 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-15 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 2e-14 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 5e-14 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 2e-13 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 3e-13 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 3e-13 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-12 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 4e-12 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 7e-11 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-10 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-09 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-08 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-08 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 4e-08 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 7e-08 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 1e-07 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-07 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-07 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 5e-07 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 5e-07 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 6e-07 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 6e-07 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 7e-07 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 8e-07 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 8e-07 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 1e-06 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 2e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 2e-06 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 3e-06 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-06 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 6e-06 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 6e-06 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-05 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-05 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-05 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 3e-05 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-05 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-05 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 5e-05 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 6e-05 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 7e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 7e-05 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 7e-05 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 8e-05 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 9e-05 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 2e-04 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 2e-04 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 3e-04 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 3e-04 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 3e-04 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-04 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 3e-04 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 4e-04 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 5e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 5e-04 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 7e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 7e-04 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 0.001 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.001 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 0.001 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.001 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 0.002 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 0.002 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 0.002 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 0.002 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.003 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.003 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 0.003 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 0.003 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 0.004 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 0.004 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 0.004 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 919 bits (2378), Expect = 0.0
Identities = 329/547 (60%), Positives = 402/547 (73%), Gaps = 5/547 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
GK++ E+ V DL GL EEAE+F K L+ +++ + G IWR +++ +L P HP
Sbjct: 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRA-GASPPSIWRR-ISQSLLTPSHP 61
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
LHQL+YYS Y +WD+ GPP WFPS + +KLTNLG LE G +LLG YKDPI+S
Sbjct: 62 FALHQLMYYSCYKNWDSDTLGPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISS 121
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F FQ+F+VE+PE YW I L E+S+VF P+CILD +D+S GG WLPG+VLN+AECCL
Sbjct: 122 FSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQWLPGAVLNVAECCL 181
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
P + D+++AI+WR++ D+ VN MT ELR QV VANALD + F KGDAIAID
Sbjct: 182 TPKPSKT--DDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V AVIIYLAIILAG VVVSIADSFA EIATRL++SKAK IFTQD I+RGG+ PL
Sbjct: 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPL 299
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
YS+V+ A KAIVLPA G V + LRE D+SW DFL+ + RP+ Y V PV+A
Sbjct: 300 YSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFT 359
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQL+ +R A+ WAH+D++ GD+ CWPTNLGW+MGP ++++S
Sbjct: 360 NILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASL 419
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
LNGATLALY GSPL R F KFVQDA VT+LGTVPS+VK W+NTNC+ GLDW+ IR F ST
Sbjct: 420 LNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE S+VDD LWL S+A Y IIE CGGTEL ++ GSLLQPQAF AFST M L IL
Sbjct: 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFIL 539
Query: 540 DECGVPY 546
D+ G PY
Sbjct: 540 DDSGNPY 546
|
Length = 728 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 529 bits (1365), Expect = 0.0
Identities = 215/312 (68%), Positives = 254/312 (81%), Gaps = 5/312 (1%)
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPMTV AVIIYLAI+LAG VVVS+ADSF+A+EIATRL +S AKG+FTQD +LRGGR PL
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL--SSVDYHPRPNYYSPVYNPVDA 357
YSKV+ AAP KAIVLPA G V +PLREQDLSW DFL ++ N YSPVY PV++
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVES 120
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V NILFSSGTTGEPKAIPWT LS +RC ++GWAH+D++ GDV CWPTNLGW+MGP +L+S
Sbjct: 121 VTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYS 180
Query: 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475
+FLNGATLALY G+PL R FGKFVQDAGVTVLG VPS+VKAWR+T +EGLDW+K+R
Sbjct: 181 AFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240
Query: 476 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 534
FASTGE S VDD LWLSS + +Y +IE CGGTEL+S YI +LLQPQA GAFSTA++
Sbjct: 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGT 300
Query: 535 GLVILDECGVPY 546
V+L++ GVPY
Sbjct: 301 RFVLLNDNGVPY 312
|
Length = 499 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 7e-49
Identities = 98/352 (27%), Positives = 153/352 (43%), Gaps = 64/352 (18%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261
++ +V TY EL +V +A+ L + KGD + I MPM AV+ LAI G + V
Sbjct: 1 EDGSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAV 60
Query: 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321
I F +ATRL+ ++AK + T D LR G++
Sbjct: 61 PIFSGFGPDAVATRLQDAEAKVLITADGFLRRGKR------------------------- 95
Query: 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 381
+ L++ I+++SGTTG+PK T
Sbjct: 96 -VDLKDDPAM-----------------------------IIYTSGTTGKPKGTVHTHAGF 125
Query: 382 -IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSF 437
++ + DLK GD W T++GW+MGP ++ L GAT+ LY+G+ P
Sbjct: 126 PVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRL 185
Query: 438 GKFVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK- 494
+ V+ VT LG P+L++A R +EG D + +R STGE + + LWL +
Sbjct: 186 WRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERV 245
Query: 495 -AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP 545
II GGTE+S + ++P +F+ + ++DE G P
Sbjct: 246 GGGRAPIINYSGGTEISGGILGNVPIRPIKPCSFNGPSPGMDADVVDEDGRP 297
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 4e-47
Identities = 94/362 (25%), Positives = 147/362 (40%), Gaps = 39/362 (10%)
Query: 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANA 225
W G LN+A L + AI++ + +TY +LR +V +ANA
Sbjct: 1 KWFEGGTLNLALNALDRHL-EADRPDDTAIIFDGEDGLFRE---LTYGDLRREVARLANA 56
Query: 226 L-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284
L D KGD +AI MP + AVI LA G + ++ +A +A R+ K +
Sbjct: 57 LKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVL 116
Query: 285 FTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344
D R G++ L +V L + + +
Sbjct: 117 IADDGTFRNGKEIALLEDADAVLSSVVVV------------PRLGLWYDEAVEKASEK-- 162
Query: 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYC 401
+ P D + +L++SGTTG+PK I + L R TA+ H DL GD +
Sbjct: 163 ---FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAK--FHGDLLPGDRFW 217
Query: 402 WPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE--RSFGKFVQDAGVTVLGTVPSLVKA 458
++ GW+ G +FS +GAT LY G P + ++ VT+ GT P+ ++
Sbjct: 218 NSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRR 277
Query: 459 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYI 514
E D + +R S GE N + W +Y+A I++ G TE +I
Sbjct: 278 LMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-----FYSALGVWILDIYGQTETGMGFI 332
Query: 515 QG 516
G
Sbjct: 333 AG 334
|
Length = 528 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-42
Identities = 111/429 (25%), Positives = 174/429 (40%), Gaps = 49/429 (11%)
Query: 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIA 176
+ + +++VE A+WE V+ + +LD G W PG+ LN A
Sbjct: 4 SLADYHALWRWSVEDLAAFWESVWDFFDVIGSKGYVVVLDGDIMP--GARWFPGARLNYA 61
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
E L R +++ AI + + +++ ELR QV +A AL + GD
Sbjct: 62 ENLL-----RHADNDPAAIYAAGE---DGERREISWAELRSQVARLAAALRDLGVKPGDR 113
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+A +P AVI LA G + S + F + R + K +F D + G+
Sbjct: 114 VAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGK 173
Query: 296 KFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ K+ L+A+V+ + P + + S P + +
Sbjct: 174 EHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERL 233
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407
P D + IL+SSGTTG PK I L ++ E H DL+ GD + T G
Sbjct: 234 --PFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLK---EHGLHCDLRPGDRLFYYTTTG 288
Query: 408 WVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
W+M L S L+GATL LY GSPL + G+T+ GT + A
Sbjct: 289 WMMWN-WLVSGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGI 347
Query: 465 --LEGLDWTKIRSFASTG-----ET-----SNVDDDLWLSSKAWYNAIIESCGGTELSSA 512
D + +R+ STG E S+V D+WL+S + GGT++
Sbjct: 348 EPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVKSDVWLASIS---------GGTDICGC 398
Query: 513 YIQGSLLQP 521
++ G+ P
Sbjct: 399 FVGGNPTLP 407
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 4e-39
Identities = 130/477 (27%), Positives = 189/477 (39%), Gaps = 78/477 (16%)
Query: 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIAL 140
G PL W PS ++ + + + L + +++VE EA+W+
Sbjct: 2 GDPL-WTPSAERIAASRMTAFIR-----WLAARRGLSFDDYAALWRWSVEDLEAFWQSVW 55
Query: 141 KEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIV-WRE 199
V+ +L + G W PG+ LN AE L R + D+ AI+ E
Sbjct: 56 DFFGVIGSTPYTVVLA--GRRMPGARWFPGARLNYAENLL-----RHRRDDRPAIIFRGE 108
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D +++ ELR QV +A AL + GD +A +P V+ LA G
Sbjct: 109 DGPRRE----LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP--LKAIV 313
+ S + F + + R + K + D GG+ F +KV A P +V
Sbjct: 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVV 224
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+P +G L W+DFL+ + PV P D + IL+SSGTTG PK
Sbjct: 225 VPYLGPAAAAAALPGALLWEDFLA--PAEAAELEFEPV--PFDHPLWILYSSGTTGLPKC 280
Query: 374 IP-------WTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426
I L + H DL GD + W T GW+M L S L GATL
Sbjct: 281 IVHGHGGILLEHLKELGL------HCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLV 333
Query: 427 LYQGSP----LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-------EGLDWTKIRS 475
LY GSP + + GVTV GT + A C E D + +R+
Sbjct: 334 LYDGSPFYPDPNVLW-DLAAEEGVTVFGTSAKYLDA-----CEKAGLVPGETHDLSALRT 387
Query: 476 FASTGE----------TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ 522
STG +V D+WL+S I GGT++ S ++ G+ L P
Sbjct: 388 IGSTGSPLPPEGFDWVYEHVKADVWLAS------I---SGGTDICSCFVGGNPLLPV 435
|
Length = 655 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-36
Identities = 73/304 (24%), Positives = 117/304 (38%), Gaps = 18/304 (5%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY+EL E+ +A AL + GD +AI +P + V+ LA++ AG V + S A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
+A L S+AK + T D L K+L ++L I +
Sbjct: 61 ERLAYILEDSEAKVLITDD---------ELLPKLLEVLLKLLVLLALIIVGDDGEGLDLL 111
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
+S + P D + I+++SGTTG+PK + T + + A
Sbjct: 112 DDELLAGASAEPPAPPV-------DPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLA 164
Query: 390 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTV 448
L GD L + +F L G TL L L+ ++ VTV
Sbjct: 165 ERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224
Query: 449 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508
L VP+L++ + D + +R S GE + L + ++ G TE
Sbjct: 225 LYGVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTE 284
Query: 509 LSSA 512
+
Sbjct: 285 TTVV 288
|
Length = 412 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 130 bits (327), Expect = 8e-32
Identities = 119/441 (26%), Positives = 181/441 (41%), Gaps = 40/441 (9%)
Query: 124 FQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPS 183
+++V+ + +W+ + V F ++D D++ G W PG+ LN AE
Sbjct: 40 LHRWSVDELDTFWKAVWEWFDVRFSTPCARVVD--DRTMPGAQWFPGARLNYAE------ 91
Query: 184 NHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242
N R A+++ D E A +T+ ELR QV +A AL + GD ++ +P
Sbjct: 92 NLLRAAGTEPALLYV-DETHEPAP--VTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+AV+ LA G + S + F AR + R + + K +FT D G++ K
Sbjct: 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDK 208
Query: 303 VL----GAAPLKAIVL-PAIGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYN--P 354
V L+A+V P +G P + L +DF ++ V+ P
Sbjct: 209 VAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAE------LVFEQLP 262
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + ILFSSGTTG PK I + + ++ E H DL GD + T GW+M
Sbjct: 263 FDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN- 321
Query: 414 ILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGL 468
L S GATL LY GSP + G T+ GT V A R
Sbjct: 322 WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTH 381
Query: 469 DWTKIRSFASTGETSNVDDDLWL----SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524
D + ++ ASTG D W+ + W +I GGT++ S + + P
Sbjct: 382 DLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASI---SGGTDICSCFAGANPTLPVHI 438
Query: 525 GAFSTATMTAGLVILDECGVP 545
G + + D G P
Sbjct: 439 GEIQAPGLGTAVQSWDPEGKP 459
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 110/397 (27%), Positives = 182/397 (45%), Gaps = 59/397 (14%)
Query: 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK-CILDRTDKSKHGGTWLPGSVLNIA 176
+ ++ + ++E P+ +W +E+ F+ K K W G LN++
Sbjct: 4 LEQYKELYEESIEDPDKFWAKLARELLDWFKPFTKVLDWSFPPFYK----WFVGGELNVS 59
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
C+ H + VAI+W D + V +TY+EL +V AN L ++ KGD
Sbjct: 60 YNCV--DRHLEARPDKVAIIWEGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDR 115
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+AI MPM A I LA G + + F+A +A R+ + AK + T D LRGG+
Sbjct: 116 VAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGK 175
Query: 296 KFPLYSKV---LGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 349
PL + V L P+ +V+ GN V + +D+ W D ++ Y
Sbjct: 176 VIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV-PWVEGRDVWWHDLMAKA-----SAYCE 229
Query: 350 PVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DLKVGD 398
P P+D+ + IL++SG+TG+PK + + T G +A + D+K GD
Sbjct: 230 P--EPMDSEDPLFILYTSGSTGKPKGV-------LHTTG-GYLLYAAMTMKYVFDIKDGD 279
Query: 399 VYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVP 453
++ W T ++GW+ G I++ NGAT +++G+P G+F ++ VT+ T P
Sbjct: 280 IF-WCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAP 338
Query: 454 SLVKAWRNTNCLEGLDWTK------IRSFASTGETSN 484
+ ++A G +W K +R S GE N
Sbjct: 339 TAIRALMR----LGDEWVKKHDLSSLRLLGSVGEPIN 371
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 4e-29
Identities = 79/322 (24%), Positives = 123/322 (38%), Gaps = 21/322 (6%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL + +A AL + GD +AI +P + +I +LA + AG V V +
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+A L + AK + T L V A P+ +VL D +P+ +
Sbjct: 99 PRELAYILNDAGAKVLITSA------EFAALLEAVAEALPVVLVVLLVGDADDRLPITLE 152
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-- 386
L P P+ + +P D +L++SGTTG PK + T + + A
Sbjct: 153 AL--------AAEGPGPDADARPVDPDDLAF-LLYTSGTTGLPKGVVLTHRNLLANAAGI 203
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLE-RSFGKFVQDA 444
L DV L + G V L + L G TL L P + ++
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKY 263
Query: 445 GVTVLGTVPSLVKAWRNT-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503
VTVL VP+ ++ + + + +R S G + + AI+E
Sbjct: 264 KVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEG 323
Query: 504 CGGTELSSAYIQGSLLQPQAFG 525
G TE S A
Sbjct: 324 YGLTETSPVVTINPPDDLLAKP 345
|
Length = 534 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-27
Identities = 111/368 (30%), Positives = 169/368 (45%), Gaps = 72/368 (19%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL---LP 182
K ++E PE +W +E+ F+ K +LD + W G LN + CL L
Sbjct: 2 KESIEDPEEFWAEQAEELDW-FKPWDK-VLD--WSNPPFAKWFVGGKLNASYNCLDRHLK 57
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMP 241
+ N VAI+W + DES +TY+EL +V AN L ++ KGD +AI MP
Sbjct: 58 AGRG----NKVAIIWEGEPGDESRT--ITYRELYREVCRFANVLKSLGVKKGDRVAIYMP 111
Query: 242 MTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
M I LA ++ AG F+A +A R+ +K+K + T D R
Sbjct: 112 MIPELPIAMLACARIGAIHSVVFAG---------FSAEALADRINDAKSKLLITADGGYR 162
Query: 293 GGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPN 346
GG+ PL V L P K IV+ G +V P+ E +D+ W D ++
Sbjct: 163 GGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEV--PMVEGRDVWWHDLMAKA-----SP 215
Query: 347 YYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAH------IDLK 395
Y P P+DA + IL++SG+TG+PK + T L +A D+
Sbjct: 216 YCEPE--PMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV--------YAATTFKYVFDIH 265
Query: 396 VGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLG 450
DVY W T ++GW+ G I++ NGAT +Y+G+P G++ V+ VT+
Sbjct: 266 PDDVY-WCTADIGWITGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFY 324
Query: 451 TVPSLVKA 458
T P+ ++
Sbjct: 325 TAPTAIRM 332
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 9e-27
Identities = 101/358 (28%), Positives = 168/358 (46%), Gaps = 55/358 (15%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ PEA+W I + + + +LD ++ W G LN+ + R E
Sbjct: 1 KEPEAFWAEQANLID--WYKPWEKVLDNSNPPFT--RWFVGGRLNLCYNAV----DRHIE 52
Query: 190 D---NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
D + +A+++ D TY EL ++V +A L + KGD + I MPM
Sbjct: 53 DGRGDQIALIY--DSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPE 110
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
AVI LA G + + FA++E+A+R+ +K K I T F + GR P Y +L
Sbjct: 111 AVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVP-YKPLLD 169
Query: 306 AA-------PLKAIVLPAIGNDVGIPLR-EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
A P K ++L V PL+ +DL W + ++ V PV++
Sbjct: 170 KALELSQHKPHKVLILNR--GQVPAPLKPGRDLDWAELMAKARPVD------CV--PVES 219
Query: 358 V--VNILFSSGTTGEPKAIPWTQLSSIR-----CTAEGWA--HI-DLKVGDVYCWPTNLG 407
+ IL++SGTTG+PK + +R A W+ +I +K GDV+ +++G
Sbjct: 220 TDPLYILYTSGTTGKPKGV-------VRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVG 272
Query: 408 WVMG-PVILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLVKAWR 460
WV+G I++ L+GAT LY+G P+ ++ + +++ GV L T P+ ++A R
Sbjct: 273 WVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIR 330
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-25
Identities = 115/387 (29%), Positives = 170/387 (43%), Gaps = 85/387 (21%)
Query: 112 RAYKDPITSFRLFQKFTVEHPEAYW-EIALKEIS------VVFREAPKCILDRTDKSKHG 164
A D L+Q+ +VE PE +W E A K + V I
Sbjct: 11 NALIDMEQYKALYQE-SVEDPEGFWAEQA-KRLDWFKPFDTVLDWNAPFI---------- 58
Query: 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + VAI+W D +S +TY+EL +V AN
Sbjct: 59 -KWFEDGELNVSYNCL--DRHLKTRGDKVAIIWEGDDPGDSRK--ITYRELHREVCRFAN 113
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIAT 274
AL ++ KGD +AI MPM A + LA ++ G F+A +A
Sbjct: 114 ALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGG---------FSAEALAD 164
Query: 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-Q 328
R+ + AK + T D +RGG+ PL + V L P K IV+ G DV E +
Sbjct: 165 RIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDV--DWVEGR 222
Query: 329 DLSWKDFLSSV-DYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W + ++ D P P+DA + IL++SG+TG+PK + T T
Sbjct: 223 DLWWHELVAGASDECE------PE--PMDAEDPLFILYTSGSTGKPKGVLHT-------T 267
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQG---S 431
G +A + D K GDVY W T ++GWV G I++ NGAT +++G
Sbjct: 268 G-GYLVYAAMTMKYVFDYKDGDVY-WCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNY 325
Query: 432 PLERSFGKFVQDAGVTVLGTVPSLVKA 458
P F + + VT+ T P+ ++A
Sbjct: 326 PDPGRFWEVIDKHKVTIFYTAPTAIRA 352
|
Length = 637 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-20
Identities = 83/302 (27%), Positives = 121/302 (40%), Gaps = 57/302 (18%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
LP + A RR D A V+ + R +TY EL +V A AL
Sbjct: 7 LPELLARAA---------RRFGDKE-AYVFGDQR--------LTYAELNARVRRAAAALA 48
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ KGD +AI P + VI L + AG VVV + + A E A L AK +F
Sbjct: 49 ALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFV 108
Query: 287 QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
L + P L+ +V+ D P E+ ++ DFL++ D P
Sbjct: 109 LGLFL------GVDYSATTRLPALEHVVICETEEDD--PHTEKMKTFTDFLAAGD----P 156
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGD------ 398
+P +P D V +ILF+SGTTG PK T + A WA L GD
Sbjct: 157 AERAPEVDP-DDVADILFTSGTTGRPKGAMLTHRQLLS-NAADWAEYLGLTEGDRYLAAN 214
Query: 399 ----VYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPLERSFGKFVQDAGVTVLGTVP 453
V+ + + + + GAT L L P + F + ++ +TVL P
Sbjct: 215 PFFHVFGY---------KAGVNAPLMRGATILPLPVFDP-DEVF-RLIETERITVLPGPP 263
Query: 454 SL 455
++
Sbjct: 264 TM 265
|
Length = 513 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 5e-20
Identities = 103/379 (27%), Positives = 159/379 (41%), Gaps = 69/379 (18%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVF------REAPKCI--LDRTDKSKHGGTWLPGSV 172
+ K +V+ P +W +I+ F C LD K W G
Sbjct: 32 YMEMYKRSVDDPAGFWS----DIASQFYWKQKWEGDEVCSENLDVR-KGPISIEWFKGGK 86
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI CL N + +AI W + + +TY EL ++V +AN L +
Sbjct: 87 TNICYNCL-DRNVEAGNGDKIAIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVK 143
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGDA+ I +PM + I LA G V + F+A +A R+ K K + T + +
Sbjct: 144 KGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVK 203
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAI------GNDVGIPL---------RE-------QD 329
RG + LK IV A+ G VGI L RE +D
Sbjct: 204 RGPK----------TINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRD 253
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAV-----VNILFSSGTTGEPKAIPWTQLSSIRC 384
+ W+D + PNY P V+ V + +L++SG+TG+PK + T +
Sbjct: 254 VWWQDVV--------PNY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVY 303
Query: 385 TAEGWAH-IDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK--- 439
TA + + D K DVY + GW+ G + + LNGAT+ +++G+P G+
Sbjct: 304 TATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWD 363
Query: 440 FVQDAGVTVLGTVPSLVKA 458
V VT+ T P+LV++
Sbjct: 364 IVDKYKVTIFYTAPTLVRS 382
|
Length = 666 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 8e-19
Identities = 98/372 (26%), Positives = 165/372 (44%), Gaps = 36/372 (9%)
Query: 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECC 179
+ F + ++E PEA+W + I ++ P+ ILD + W G N+ C
Sbjct: 2 RYEEFYQRSIEQPEAFWAEQARRID--WQTPPQRILD--YSNPPFARWFAGGRTNL--CH 55
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
H + +A+V + +TY++L +V + A+AL + +GD + I
Sbjct: 56 NALDRHLDERGEQLALVTVSSETGQERT--LTYRQLHREVNVFASALRALGVGRGDRVLI 113
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM AV LA G + + FA+ +A R+ + K I + D +RGG+ P
Sbjct: 114 YMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIP 173
Query: 299 LYSKVLGAAPLKAIVLPA--IGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV 355
Y +L AA +A P + D G+ P+R + +D VDY + PV
Sbjct: 174 -YKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL--IPGRD----VDYAALRTQHEDAQVPV 226
Query: 356 DAVVN-----ILFSSGTTGEPKAIPW-TQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409
+ + + IL++SGTTG+PK + ++ WA ++ G V +++GWV
Sbjct: 227 EWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWV 286
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQDAGVTVLGTVPSLVK-------A 458
+G I+++ L GA LY+G P G V+ GV + + P+ ++ A
Sbjct: 287 VGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA 346
Query: 459 WRNTNCLEGLDW 470
W + L L W
Sbjct: 347 WLRKHDLSSLHW 358
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-18
Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 33/259 (12%)
Query: 210 MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ +L ++ + +A L + +GD +A+ P ++ ++L + AG +V + S+
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-----KAIVLPAIGNDVGI 323
E+A +L++SK K IF KV AA + IVL + + V
Sbjct: 71 PDELAHQLKISKPKLIFCDP---------DELDKVKEAAKELGPVVRIIVLDSAPDGVLR 121
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
+D L +P+ + D +L+SSGTTG PK + LS
Sbjct: 122 I--------EDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGV---MLSHKN 170
Query: 384 CTA------EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSF 437
A + DV G +S L GAT+ + E +F
Sbjct: 171 IIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSE-TF 229
Query: 438 GKFVQDAGVTVLGTVPSLV 456
K ++ VT L VP +
Sbjct: 230 LKLIEKYKVTSLFLVPPIA 248
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 6e-17
Identities = 48/156 (30%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSF 419
IL++SGTTG+PK + + + + I L GDV L V+G L +
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L G T+ LY+G P SF + ++ VTVL VP+L A G D + +R S
Sbjct: 65 LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLLISG 124
Query: 480 GETSNVDDDLWLSSKAWYNA-----IIESCGGTELS 510
GE L + I+E G TE S
Sbjct: 125 GEP------LSPELLERFEERPGAPILEGYGLTETS 154
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 92/339 (27%), Positives = 143/339 (42%), Gaps = 57/339 (16%)
Query: 166 TWLPGSVLNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
+WL +NIA + + K VA+ + D S TYKEL+E
Sbjct: 35 SWLETGKVNIAYEAIDRHADGGRKDK----VALRYL----DASRKEKYTYKELKELSNKF 86
Query: 223 ANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
AN L + KGD + I MP L + G +V + ++F + RL S+A
Sbjct: 87 ANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEA 146
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340
K + T +L K P LK ++L +G DV +D
Sbjct: 147 KVLITTPALLE--------RKPADDLPSLKHVLL--VGEDVEEGPGT-----------LD 185
Query: 341 YHPRPNYYSPVYNPV-----DAVVNIL-FSSGTTGEPKAIPWTQLSSIRCTAEG-WAHID 393
++ S ++ D IL ++SG+TG+PK + + ++ G + +D
Sbjct: 186 FNALMEQASDEFDIEWTDREDGA--ILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-LD 242
Query: 394 LKVGDVYCWPT-NLGWVMGPVI-LFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVL 449
L DVY W T + GWV G +F+ +LNGAT + G SP ER + ++D VTV
Sbjct: 243 LHEDDVY-WCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSP-ERWYR-ILEDYKVTVW 299
Query: 450 GTVPS----LVKAWRNTNCLEGLDWTKIRSFASTGETSN 484
T P+ L+ A + ++ D + +R S GE N
Sbjct: 300 YTAPTAIRMLMGA--GDDLVKKYDLSSLRHILSVGEPLN 336
|
Length = 570 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 43/261 (16%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL V +A L KGD + + P ++ +++LA++ AG VV+ A+
Sbjct: 33 LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG-AVVTTANPLY 91
Query: 269 -AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 327
EIA +++ S AK T L K+ A ++L + +
Sbjct: 92 TPAEIAKQVKDSGAKLAITTS---------ELAEKLASLALEPVVLLDSADDGSA----- 137
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRC 384
+ + + P V D + +SSGTTG K + T ++++
Sbjct: 138 -------AIDDLLFADEPEPPVVVIKQDDVAA-LPYSSGTTGRSKGVMLTHRNLIANVAQ 189
Query: 385 TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL----ERSFGKF 440
G + DV + + G + L L G+ + KF
Sbjct: 190 LVAGEG-PNFDREDVTLCVLPMFHIYG----LTVILLA---LLRLGATVVVMPRFDLEKF 241
Query: 441 ---VQDAGVTVLGTVPSLVKA 458
++ VT L VP +V A
Sbjct: 242 LAAIEKYKVTHLPVVPPIVLA 262
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 2e-14
Identities = 60/284 (21%), Positives = 94/284 (33%), Gaps = 70/284 (24%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E A L KGD +A+ +P + I Y I+ AG VVV + +
Sbjct: 25 LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK +
Sbjct: 85 PRELEHQLNDSGAKVLIV------------------------------------------ 102
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTA 386
+S++D L+S P PV D + + ++ GTTG PK T L +
Sbjct: 103 AISFEDALASGAPLP-----LPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQI 157
Query: 387 EGWAHIDLKVGD----------VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS 436
W + D ++ N + GAT L + +
Sbjct: 158 AAWVKDLREGEDRFLTALPLFHIFGLTVN---------MLLGLRLGATNVLVP-NFRPIN 207
Query: 437 FGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
K ++ T+ VP+L A N + D++ +R S G
Sbjct: 208 VLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGG 251
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 5e-14
Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 48/269 (17%)
Query: 210 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+TY++L + ++ + + +G+ I I +P +V + LA++LAG V V + +
Sbjct: 8 LTYRKLLTASLALSRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGE 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI--PLRE 327
+ + + + K + T R F L L+ +V+ G + LR
Sbjct: 68 EGLRSACKQAGIKTVIT-------SRAF------LEKLKLEGLVVLLEGVRIVYLEDLRA 114
Query: 328 QDLSWKD----FLSSVDYHPRPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQ---L 379
+ +S D FL++ P + D ILF+SG+ G PK + + L
Sbjct: 115 K-ISKADKLKAFLAA--KLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLL 171
Query: 380 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATL--------ALYQG 430
++I A A IDL DV ++G + LF +F L L +Y
Sbjct: 172 ANIDQIA---AVIDLNTEDV---------LLGALPLFHAFGLTVTLLLPLLTGLRVVYYP 219
Query: 431 SPLE-RSFGKFVQDAGVTVLGTVPSLVKA 458
+PL+ + + ++D T+L P+ ++
Sbjct: 220 NPLDAKKIAELIRDYKATILCGTPTFLRG 248
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-13
Identities = 94/400 (23%), Positives = 165/400 (41%), Gaps = 73/400 (18%)
Query: 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK--SKHGGTWLPGSVLNIA 176
S+ F + +++ PEA+W + I ++ +LD ++ ++ W G N+
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRID--WQTPFTQVLDYSNPPFAR----WFVGGRTNLC 55
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
+ H K +A++ DE T+++L ++V +A L ++ +GD
Sbjct: 56 HNAV--DRHLAKRPEQLALIAVSTETDEERT--YTFRQLHDEVNRMAAMLRSLGVQRGDR 111
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+ I MPM A LA G + + FA+ +A R+ +K I + D RGG+
Sbjct: 112 VLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGK 171
Query: 296 KFPLYSKVLGAAPLKAIVLPA---------------IGNDVGI-PLREQDLSWK---DFL 336
P Y +L A A P G DV LR Q L + ++L
Sbjct: 172 VVP-YKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVPVEWL 230
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA------ 390
S + P+Y IL++SGTTG+PK + R T G+A
Sbjct: 231 ESNE----PSY-------------ILYTSGTTGKPKGVQ-------RDTG-GYAVALATS 265
Query: 391 --HI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQD 443
I K G+ + +++GWV+G I+++ L G +Y+G P G + V+
Sbjct: 266 MDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEK 325
Query: 444 AGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGE 481
V + + P+ ++ + + L D + +R+ GE
Sbjct: 326 YKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGE 365
|
Length = 629 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 3e-13
Identities = 54/255 (21%), Positives = 90/255 (35%), Gaps = 35/255 (13%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY+EL E+ +A L GD +A+ + + V+ LA++ AG V + ++
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L + A+ + T A A ++ + + L
Sbjct: 61 AERLAFILEDAGARLLLTDS----------------ALASRLAGLVLPVILLDPLELAAL 104
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
D + P Y ++++SG+TG PK + T S + A
Sbjct: 105 DDAPAPPPPDAPSGPDDLAY------------VIYTSGSTGRPKGVVVTHRSLVNLLAWL 152
Query: 389 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDA---- 444
L D +L + +F + L GATL + ER +
Sbjct: 153 ARRYGLDPDDRVLQFASLSFDASVEEIFGALLAGATLVVPPED-EERDDAALLAALIAEH 211
Query: 445 GVTVLGTVPSLVKAW 459
VTVL PSL+
Sbjct: 212 PVTVLNLTPSLLALL 226
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 70/287 (24%), Positives = 110/287 (38%), Gaps = 61/287 (21%)
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
H + N +AI + +TYK+ E V VAN L+ SK IAI +
Sbjct: 8 KKHASLQPNKIAIKENDRV--------LTYKDWFESVCKVANWLNEKESKNKTIAILLEN 59
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+ + ++ +AG+ V + + E+ RL +S A I T+ + L
Sbjct: 60 RIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLN---------- 109
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
L I D WK + Y P Y+P+ N +A +
Sbjct: 110 -----DLPDEEGRVIEID----------EWKRMIE--KYLPT---YAPIENVQNAPFYMG 149
Query: 363 FSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS- 418
F+SG+TG+PKA Q S S C D + + V+ L S
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLHSFDCNVH----------DFHMKREDS--VLIAGTLVHSL 197
Query: 419 FLNGATLALYQGSP--LERSFGKF-----VQDAGVTVLGTVPSLVKA 458
FL GA LY G L R F ++ ++V+ TVP+++++
Sbjct: 198 FLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLES 244
|
Length = 487 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 63/278 (22%), Positives = 92/278 (33%), Gaps = 61/278 (21%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL V +A L + GD + + +P VI+Y A+ G + V +
Sbjct: 41 LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR 100
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A EI R S+AK D
Sbjct: 101 AHEIGHFARQSEAKAYIIAD---------------------------------------- 120
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
+ F DY + + V S GTTG PK IP T L S R +
Sbjct: 121 --RFSGF----DYAA---LARELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARAS 171
Query: 386 AEGWAHIDLKVGDVYCWPTNLG--WVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQ 442
AE +D G VY + + L + L G T+ L+ SP ++
Sbjct: 172 AE-ACGLD--PGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDV--AFPLIE 226
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
VT VP+L+ W + D + +R G
Sbjct: 227 REKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQVGG 264
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 4e-12
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 29/198 (14%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVR 245
+ + VA++++E +TY+EL E+V +A+ L GD +AI
Sbjct: 27 KDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPE 82
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD------FILRGGRKFPL 299
I LAI+ G V V I + ++A L S++K IF ++ + +
Sbjct: 83 WAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKV 142
Query: 300 YSKVLGAAPLKAIVLP-----AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP 354
++ ++ V + D GI L D S R P
Sbjct: 143 VDLIVIIDLVREAVEAKALVLEVFPDEGISLFLID--------SAGLEGRIAPPKP---- 190
Query: 355 VDAVVNILFSSGTTGEPK 372
D + I+++SGTTG PK
Sbjct: 191 -DDLATIIYTSGTTGTPK 207
|
Length = 613 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 7e-11
Identities = 63/284 (22%), Positives = 97/284 (34%), Gaps = 77/284 (27%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL + +A AL + GD +A +P V++YLA G V+ I +
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ LR ++A + + +P
Sbjct: 62 ERELGFILRQARA----------------------------RVLFVPD------------ 81
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
++ F DY P D V +L++SGTTGEPK + T L+ +R
Sbjct: 82 --EFRGF----DYAAMP----------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSY 125
Query: 386 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFG 438
E L DV P+ L + G FL G L L G+ +
Sbjct: 126 VERLG---LTPDDVVLMPSPLAHITG-------FLYGLELPLLLGATVVLQDRWDPARAL 175
Query: 439 KFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482
+ +++ GVT + G D +R F G
Sbjct: 176 ELIREHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAP 219
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 25/214 (11%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
A+V+ + R TY+E ++ +A+AL + KGD +A+ P T + +
Sbjct: 21 TAVVYGDRR--------YTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHF 72
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLK 310
+ +AG V+V + A +IA L S+AK +F Q+F L + L K
Sbjct: 73 GVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEF-------LSLAEEALALLSTK 125
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVD--AVVNILFSSGTT 368
I+ I ++ ++D L+ D P P D +++ ++SGTT
Sbjct: 126 EIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDP------LPIPPDDEWDPISLNYTSGTT 179
Query: 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402
G PK + +T + + VY W
Sbjct: 180 GNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLW 213
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 49/205 (23%), Positives = 73/205 (35%), Gaps = 29/205 (14%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTV 244
R+ + A+V+ + TY EL V VA AL D KGD +A +
Sbjct: 21 ARRYPDKTALVFGDRS--------WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSD 72
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+++LA AG V V + E+A L S A+ + P L
Sbjct: 73 AYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALA------PTAEAAL 126
Query: 305 GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P+ ++L + + RE W DF V D + IL++
Sbjct: 127 ALLPVDTLILSLV-----LGGREAPGGWLDFAD--WAEAGSVAEPDVELADDDLAQILYT 179
Query: 365 SGTTGEPK-------AIPWTQLSSI 382
SGT PK A+ +S I
Sbjct: 180 SGTESLPKGAMLTHRALIAEYVSCI 204
|
Length = 523 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 53/270 (19%), Positives = 95/270 (35%), Gaps = 65/270 (24%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
+A+V+ + +TY EL E+ +A L GD +A+ + + V+ L
Sbjct: 4 IALVYGDRS--------LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAIL 55
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
AI+ AG V + ++ A +A L S A+ + T +
Sbjct: 56 AILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDE----------------------- 92
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTG 369
L + + L ++ P VDA + ++++SG+TG
Sbjct: 93 ------------SLAPLARADQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTG 140
Query: 370 EPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-------LFSSFLN 421
PK + +R + I L D + + P+ ++ + LN
Sbjct: 141 RPKGVAVPHRGVVRLVRNTNY--IALDPDDRFL-------QLSPLSFDASTFEIWGALLN 191
Query: 422 GATLALYQGSPLERS--FGKFVQDAGVTVL 449
G L L L + + + GVTVL
Sbjct: 192 GGRLVLIDKETLLDPDRLARLIAEQGVTVL 221
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 32/291 (10%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ++V AN L + KGD +AI +P +AVI Y +LAG +VV +
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK I D + FP + V A ++ +++ I + + P +
Sbjct: 110 ERELEYQLHDSGAKVILCLDLV------FPRVTNVQSATKIEHVIVTRIADFLPFP---K 160
Query: 329 DLSW-------KDFLSSVDYHPRPNYYSPVYNPVDAVVNIL-----------FSSGTTGE 370
+L + + + V + ++ V V+ V + ++ GTTG
Sbjct: 161 NLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGF 220
Query: 371 PKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLAL 427
PK + T + + T G W + + +V V G ++ S + G + L
Sbjct: 221 PKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVL 280
Query: 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
++ F + ++ VT+ P++ A N+ L+ D + IR+ S
Sbjct: 281 IPKFDMKMVF-EAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACIS 330
|
Length = 563 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-08
Identities = 57/268 (21%), Positives = 97/268 (36%), Gaps = 45/268 (16%)
Query: 199 EDRCDESAVNL----MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAI 253
D A+ +TY EL + +A L G+ +AI ++ V+ LA+
Sbjct: 238 ATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAV 297
Query: 254 ILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV 313
+ AG V + + A +A L S+ + TQ
Sbjct: 298 LKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQA------------------------- 332
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+DVG+P D + + + P DA+ I+++SG+TG+PK
Sbjct: 333 -HLRVDDVGLPGLALDDALSEIPDTDP--------IPQALLGDALAYIIYTSGSTGQPKG 383
Query: 374 IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLAL----YQ 429
+ + + A L D +L + +F + L GA L L Q
Sbjct: 384 VRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQ 443
Query: 430 GSPLERSFGKFVQDAGVTVLGTVPSLVK 457
P + ++ G+TVL VP L++
Sbjct: 444 VDPAA--LLELLEAQGITVLLLVPLLLR 469
|
Length = 642 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 7e-08
Identities = 65/295 (22%), Positives = 113/295 (38%), Gaps = 49/295 (16%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
L I + + RK + A+ + R TY EL E+V +ANAL +
Sbjct: 6 LTIGR---ILRHGARKHPDKEAVYFDGRR--------TTYAELDERVNRLANALRALGVK 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFI 290
KGD +A+ + + Y A+ G V+ I EIA L ++ + + +F+
Sbjct: 55 KGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV 114
Query: 291 LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + +L P V+ G+ PL + +++ L++ + P
Sbjct: 115 -------PLLAAILPQLPTVRTVI-VEGDGPAAPLAPEVGEYEELLAA---AS-DTFDFP 162
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIRCTAEGWAHIDLKVGDVY-----CWP 403
+ DA +L++SGTTG PK + + L W + L DVY +
Sbjct: 163 DIDENDAAA-MLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW--LKLSRDDVYLVIVPMFH 219
Query: 404 TN-LGWVMGPVILFSSFLNGATLAL---YQGSPLERSFGKFVQDAGVTVLGTVPS 454
+ G P + + + GA + + L ++ VT VP+
Sbjct: 220 VHAWGL---PYL---ALMAGAKQVIPRRFDPENLL----DLIETERVTFFFAVPT 264
|
Length = 521 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 41/223 (18%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+++L + +A AL G +A+ ++ V++ A +L G + +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
E +L + + T L K A L I E
Sbjct: 61 NERTNQLEDLDVQLLLTDS---------LLEEKDFQADSLDRIEAAG--------RYETS 103
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
LS +D + ++F+SGTTG+PKA+P T + +A G
Sbjct: 104 LS-------------------ASFNMDQIATLMFTSGTTGKPKAVPHT-FRNHYASAVGS 143
Query: 390 AHIDLKVGDVYCWPTNLGW--VMGPVILFSSFLNGATLALYQG 430
+L + W +L + G ILF + GATL +
Sbjct: 144 KE-NLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK 185
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E A L GD +A+ +P + I++ I+ G V V ++ F
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI-------VLPAIGNDVG 322
E++ L + A+ + D + P+ +V L+ + VLPA
Sbjct: 120 HELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEPT--- 170
Query: 323 IPL-------REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP 375
+PL R D L ++ P P +DA+ + ++ GTTG PK
Sbjct: 171 LPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPA--LDALAALNYTGGTTGMPKGCE 228
Query: 376 WTQ 378
TQ
Sbjct: 229 HTQ 231
|
Length = 567 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT-NLGWVMGPVI-LFSS 418
+ F+SGTTG+PK + + + A +DL+ DVY W T + GWV G + +
Sbjct: 94 LHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY-WCTADPGWVTGTSYGIIAP 152
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSF 476
LNG TL + +G + +++ VTV T P+ ++ D + +R
Sbjct: 153 LLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHI 212
Query: 477 ASTGETSN 484
AS GE N
Sbjct: 213 ASVGEPLN 220
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 5e-07
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ EL E+V +A L + GD +AI VI LAI+ AG V V I + +
Sbjct: 6 ITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSS 65
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+A L S A+ +F +D
Sbjct: 66 PEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 68/283 (24%), Positives = 112/283 (39%), Gaps = 35/283 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY L E+V+ +A+ L + ++G+ +AI + + V LAG V V I
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFP-----LYSKVLGAAPLKAIVLPAIGNDVGI 323
A ++A L + + T L L + ++ P A
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPA-- 143
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
SW L+ D P PV + A IL++SG+TG PK + + ++
Sbjct: 144 -------SWPKLLALGDADPPH----PVIDSDMAA--ILYTSGSTGRPKGVVLSH-RNLV 189
Query: 384 CTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ 442
A+ A ++ + D L + G L ++F GAT+ L+ L R K ++
Sbjct: 190 AGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALE 248
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-----IRSFASTG 480
G+T L VP L W L LDW + +R ++G
Sbjct: 249 KHGITGLAAVPPL---WAQ---LAQLDWPESAAPSLRYLTNSG 285
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 22/251 (8%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY + +V +ANAL+++ GD +A T R + +Y A+ G V+ ++ +
Sbjct: 27 TYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSP 86
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQ 328
+IA + ++ K IF D L PL + P +KA+V+ + L
Sbjct: 87 EQIAYIINHAEDKVIFVDDDFL------PLLEAIAPRLPTVKAVVVYDDADMPETSL-PN 139
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-----R 383
++++ L P Y P + A + ++SGTTG PK + ++ S +
Sbjct: 140 VYAYEELLEEES----PEYEWPELDENTAAG-LCYTSGTTGNPKGVVYSHRSLVLHTLAS 194
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+ L D + V + +++ + GA L L S +++
Sbjct: 195 ALPDSLG---LSESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEE 251
Query: 444 AGVTVLGTVPS 454
VTV VP+
Sbjct: 252 EKVTVSAGVPT 262
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 67/281 (23%), Positives = 98/281 (34%), Gaps = 32/281 (11%)
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D D TY EL V AN L ++ GD +A +P AG
Sbjct: 51 DPLDRPET--WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG- 107
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP-LKAIVL 314
+ I +IA LR + AK + T L ++ KV L A P L+ +V
Sbjct: 108 IANPINPLLEPEQIAELLRAAGAKVLVT----LGPFPGTDIWQKVAEVLAALPELRTVVE 163
Query: 315 PAIGNDVGIPLREQDLSWK--------DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+ + P R + DF + + P +S D V + G
Sbjct: 164 VDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGG 223
Query: 367 TTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422
TTG PK T + + A W + L GD L V V + G
Sbjct: 224 TTGMPKLAQHTHGNEV---ANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARG 280
Query: 423 ATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 458
A + L Y+G + +F K V+ + L VP++ A
Sbjct: 281 AHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAA 321
|
Length = 632 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 65/289 (22%), Positives = 102/289 (35%), Gaps = 62/289 (21%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ VA L + +GD + + +P V+ +L G V + +
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S AK I TQ K+ G A + + I + L
Sbjct: 111 PAEIAKQAKASGAKLIITQS---------CYVDKLKGLAEDDGVTVVTIDDPPEGCLHFS 161
Query: 329 DLSWKDF--LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
+L+ D L V+ P D VV + +SSGTTG PK + T + A
Sbjct: 162 ELTQADENELPEVEISP------------DDVVALPYSSGTTGLPKGVMLTHKGLVTSVA 209
Query: 387 EGWAHID-------LKVGDV----------YCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
+ +D DV Y + +L GA + +
Sbjct: 210 Q---QVDGENPNLYFHSDDVILCVLPMFHIYSLNS---------VLLCGLRVGAAILIMP 257
Query: 430 ----GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 474
G+ LE +Q VT+ VP +V A + +E D + IR
Sbjct: 258 KFEIGALLE-----LIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIR 301
|
Length = 537 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 38/248 (15%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYV 259
+TY +L E+V + L + SK D + I M T+ +I L+ ++ GY
Sbjct: 93 LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI----VLP 315
V S+ D I +L ++ GI + I F + A L V+
Sbjct: 153 VKSLIDRI--ETITPKLIITTNYGILNDEII-----TFT--PNLKEAIELSTFKPSNVIT 203
Query: 316 AIGNDV----------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILF 363
ND+ IP LSW D + + + + +Y Y PV++ + IL+
Sbjct: 204 LFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYE--YVPVESSHPLYILY 261
Query: 364 SSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
+SGTTG KA+ + + W + I+ + V +++GWV L+ S G
Sbjct: 262 TSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLG 321
Query: 423 ATLALYQG 430
T +++G
Sbjct: 322 NTFVMFEG 329
|
Length = 647 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 13/161 (8%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLKVGDVYCWPT-NLGWVM 410
D + +++SGTTG PK +P + A +A+ IDL+ DV+ W + GW
Sbjct: 88 DDLFAQMYTSGTTGLPKGVPV----PLNALAAFYAYMRYAIDLRDDDVF-WNIADPGWAY 142
Query: 411 G-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 469
G + G T +G + ++ GVT P+ +
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAAR 202
Query: 470 WT-KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 509
K+R +S GE N + W + I + G TE
Sbjct: 203 IKLKLRVASSAGEPLNPEVVRWFQA-NLGVTIHDHYGQTET 242
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E +A L + +KG +AI MP ++ + A++ AGYVVV++ +
Sbjct: 49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323
RE+ +L+ S A+ I ++F +VL +K +V+ ++G+ +G
Sbjct: 109 PRELEHQLKDSGAEAIVVLENFA-------TTVQQVLAKTAVKHVVVASMGDLLGF 157
|
Length = 557 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y ELREQ VAN L D GD +A +P T V+ LA G + V + +F
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 269 AREIATRLRVSKAKGIFT 286
+ I RL S AK + T
Sbjct: 61 PKAIEYRLGHSGAKVVVT 78
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 61/288 (21%), Positives = 97/288 (33%), Gaps = 83/288 (28%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ A++ +TY EL + +A AL + GD +A+ MP ++
Sbjct: 2 DATAVIDGAGT--------LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVA 53
Query: 250 YLAIILAGYVVVSI-ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP 308
L I+LAG V I D A R A L + A+ + T
Sbjct: 54 VLGILLAGAAYVPIDPDQPAER-RAAILARAGARAVLTDP------------------GL 94
Query: 309 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368
+ P + D + P D + ++F+SG+T
Sbjct: 95 AQPEEAPDLLVVA-------DDAAAA---------ESPAPPPPRVDPDDLAYVIFTSGST 138
Query: 369 GEPKAIPWTQ---LSSIRCTAEGWA-------------HIDLKVGDVYCWPTNLGWVMGP 412
GEPK + T +++I + H DL V D++
Sbjct: 139 GEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSALHFDLSVYDIFG----------- 187
Query: 413 VILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLV 456
S+ GA L L R + + VQ GVTV +VP+L+
Sbjct: 188 --ALSA---GAALVL--PDEARRRDPDHWAELVQRHGVTVWNSVPALM 228
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 41/205 (20%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y+EL E+ +A L KGD + + M + + VI Y AI+ A VVV +
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 269 AREIATRLRVSKAK-GIFTQDFILRGGRKFPLYSKVL---GAAPLK-AIV------LPAI 317
E+A + S A+ I + L KV G L+ IV LPA
Sbjct: 97 EEELAHYVTDSGARVAIVGSE----------LAPKVAPAVGNLRLRHVIVAQYSDYLPAE 146
Query: 318 GND-------VGIPLR----EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
PL+ ++WK+ L++ P P+ P D + + ++SG
Sbjct: 147 PEIAVPAWLRAEPPLQALAPGGVVAWKEALAA-GLAPPPHTAGP-----DDLAVLPYTSG 200
Query: 367 TTGEPKAIPWTQLSSIRCTAEGWAH 391
TTG PK T ++ A G
Sbjct: 201 TTGVPKGCMHTH-RTVMANAVGSVL 224
|
Length = 546 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 60/292 (20%), Positives = 92/292 (31%), Gaps = 116/292 (39%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVR 245
K + A+V D +TY EL+E+ +A L + GD +A+ +
Sbjct: 2 AKHPDRPALVVGGDT--------LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPD 53
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
A LA + AG V + S A R+ K+L
Sbjct: 54 AYAAILACLKAGAAYVPLDPSQPA----ERIA------------------------KILE 85
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
AA A+V P Y ILF+S
Sbjct: 86 AAGPAALV---------------------------ADPDDLAY------------ILFTS 106
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-------- 414
G+TG+PK + + S + W D + + G V
Sbjct: 107 GSTGKPKGVQISHANLASFL-----DWMVEDFDLTE------------GDVFSNQAPFSF 149
Query: 415 ------LFSSFLNGATLAL----YQGSPLERSFGKFVQDAGVTVLGTVPSLV 456
LF + +GATL + PL +F+++ G+TV +VPS
Sbjct: 150 DLSVFDLFPALASGATLYVIPKEQIADPLA--LFEFLKEHGLTVWVSVPSFA 199
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 61/238 (25%), Positives = 87/238 (36%), Gaps = 50/238 (21%)
Query: 211 TYKELREQVMLVAN-ALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY L +AN L GD +A +P IIYLA + G V V + S+
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 270 REIATRLRVSKAKGIFT---------QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
E+ L +AK F D IL + P +++G L PA
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA----PAT--- 163
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPW 376
LS ++ Y P+ + D + +LF+SGT G PK +
Sbjct: 164 -------SSLSLSQIIAD---------YEPLTTAITTHGDELAAVLFTSGTEGLPKGVML 207
Query: 377 TQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431
T L+S R ++L DV+ P LG G FL+G T G+
Sbjct: 208 THNNILASERAYCAR---LNLTWQDVFMMPAPLGHATG-------FLHGVTAPFLIGA 255
|
Length = 547 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 28/223 (12%)
Query: 211 TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+++EL AN L +GD +A+ +P ++ +A I G V +
Sbjct: 43 SFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A++I RL+ SKAK I T D + A + +I + L
Sbjct: 103 AKDILYRLQASKAKCIVTSDEL---------------APAVDSIASEC--PSLKTKLLVS 145
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN----ILFSSGTTGEPKAIPWTQLS-SIR 383
+ S +L ++ S + V I F+SGTTG PK + S +
Sbjct: 146 EHSRDGWL---NFKELLKEASTEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLG 202
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATL 425
G +DL D+ ++ GW+ + LFS ++ GA +
Sbjct: 203 LKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACV 245
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 57/276 (20%), Positives = 104/276 (37%), Gaps = 33/276 (11%)
Query: 209 LMTYKELREQVMLVANAL--DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266
MTYK+L E V VA L + KG+ IAI ++ +++ AI + V +
Sbjct: 27 EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIR 86
Query: 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR 326
E+ +L+ S +F + + + + + V I
Sbjct: 87 LTENELIFQLKDSGTTVLFVE----------KTFQNMALSMQKVSYVQRVI--------- 127
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
L ++ N+ A I ++SGTTG+PK TQ +
Sbjct: 128 -----SITSLKEIEDRKIDNFVEK---NESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFS--SFLNGATLALYQGSPLERSFGKFVQDA 444
IDL + D L + +G + LF+ + G + + + ++ ++
Sbjct: 180 NNTFAIDLTMHDRSIVLLPL-FHIGGIGLFAFPTLFAGGVIIVPRKFEPTKAL-SMIEKH 237
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
VTV+ VP++ +A N + E + +R F + G
Sbjct: 238 KVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGG 273
|
Length = 496 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 74/307 (24%), Positives = 126/307 (41%), Gaps = 29/307 (9%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL QV + AL + + + + + M V I +L I AG V V++
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLRE 327
A + A L S+A+ +F +L P+ LG +P L+ V+ E
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVG-----RPEAGE 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
L+ + L++ + P D L+SSG+TG PK + T S+ TAE
Sbjct: 140 VQLA--ELLAT-----ESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTH-SNPYWTAE 191
Query: 388 GWAH--IDLKVGDVYCWPTNL--GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+A + ++ DV L + +G + F + GAT L P + ++
Sbjct: 192 LYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSV-GATTVLMGERPTPDAVFDRLRR 250
Query: 444 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIE 502
T+ VP+L A L D ++R S GE + ++ +A + I++
Sbjct: 251 HQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEA--LPAEVGQRWQARFGVDIVD 308
Query: 503 SCGGTEL 509
G TE+
Sbjct: 309 GIGSTEM 315
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ EL+E+ AN L D +GD +A+ +P + L I G V +
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 270 REIATRLRVSKAKGIFTQD 288
++I RL + A+ I T
Sbjct: 62 KDIRYRLERAGARAIVTSA 80
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 27/182 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T+++L + V +A L + GD + I P ++ A G ++V+I ++
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-----------------LKA 311
A E+ L S + + D + ++ + P L+
Sbjct: 106 ASELEYALGQSGVRWVICAD----AFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
+V A G + + + +S R D +NI ++SGTTG P
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDR-----DDPINIQYTSGTTGFP 216
Query: 372 KA 373
K
Sbjct: 217 KG 218
|
Length = 558 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNLGWV--MG 411
D V I F+SGTTG PK I + + L+ DV+ L + +G
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFH-RDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLG 205
Query: 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN-TNCLEGLDW 470
++LF + + L Q +P K +Q+ T+L T P+ A+R ++ D
Sbjct: 206 GLVLFPLRFGASAVLLEQATP--PLLLKAIQEHRATILFTAPT---AYRAMLIKVKAFDI 260
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYI 514
+ +R S GET + +W + WY II+ G TE+ +I
Sbjct: 261 SSLRKCVSAGET--LPAKVW---QDWYERTGLKIIDGIGATEMLHIFI 303
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 40/201 (19%), Positives = 67/201 (33%), Gaps = 50/201 (24%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL----- 415
++++SG+TG+PK + T +I C + LG G +L
Sbjct: 104 VIYTSGSTGKPKGVVITH-RNI-CNF------------LRAEGAILGIRPGDRVLQFASI 149
Query: 416 ---------FSSFLNGATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
F++ L G TL + R +F+ VTV PSL+ +
Sbjct: 150 AFDVSILEIFTTLLAGGTLVI--PPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDV 207
Query: 465 LEGLDWTKIRSFASTGET-SNVDDDLWLSSKAWYNAIIESCGGTE--LSSAYIQGSLLQP 521
+R+ GE D W + N G TE +++ + + +P
Sbjct: 208 ------PSLRTLILGGEACPQALVDRWSKPRRLLNT----YGPTEATVTATASRLTPGKP 257
Query: 522 QAFG-AFSTATMTAGLVILDE 541
G T +LD
Sbjct: 258 VNIGRPLPNYTC----WVLDP 274
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 35/260 (13%)
Query: 151 PKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLM 210
+ R SK G W ++ + + + D +R+ AV
Sbjct: 3 AVLLAPRRAASKAAGLWRDRTINDHFDAAV-----ANCPDKPALTAYRDG---HGAVRRF 54
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+Y+EL +V +A L + +GD ++ +P +YLA G V+ + F
Sbjct: 55 SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGI----- 323
RE++ L + +K +F + RG + ++ P L+ +V+ D
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLM 173
Query: 324 -PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---L 379
P R+ L+ PRP SP D V ++++SGTTGEPK + T
Sbjct: 174 TPERDDTPDAAAILAG----PRP---SP-----DDVTQLIYTSGTTGEPKGVMHTANTLF 221
Query: 380 SSIRCTAEGWAHIDLKVGDV 399
S+I AE ++L GDV
Sbjct: 222 SNIHPYAE---RLELGGGDV 238
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T++EL ++V +A AL GD + I M V LA + G + V +
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + A + T+ + P+ + V PL + V+ A G +
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVA-----GGSSDDS 151
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
L ++D L+ +PV P D+ I+++SGTTG PK
Sbjct: 152 VLGYEDLLAEAGPAH-----APVDIPNDSPALIMYTSGTTGRPK 190
|
Length = 542 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 67/311 (21%), Positives = 113/311 (36%), Gaps = 29/311 (9%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL+E+V NAL + + + + + + T + I G V V I
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK-AIVLPAIGNDVGIPLRE 327
+ L S+A+ + + + + L P L+ IV+ G
Sbjct: 92 DDYRYYLNDSRARVLVISEELW------EVLKPALQKDPHLRHVIVVGGAGPGA------ 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
LS+ +++ S D + L+SSG+TG PK + + TAE
Sbjct: 140 --LSYAQLIATAAEELEAAATSA-----DDMAFWLYSSGSTGRPKGVVHLH-HDMLVTAE 191
Query: 388 GWAHIDLKV--GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDA 444
+A L + DV L + G L+ GAT L P + ++
Sbjct: 192 AYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERY 251
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIES 503
TV VP+L A D + +R S GE + ++ K + I++
Sbjct: 252 KPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEA--LPAEIGYRWKELFGLEILDG 309
Query: 504 CGGTELSSAYI 514
G TE+ ++
Sbjct: 310 IGSTEMLHIFL 320
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 34/173 (19%)
Query: 210 MTYKELREQVMLVANALDTMF-----SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
+TY EL + +N L +GD +AI + +Y A +G I
Sbjct: 12 VTYGELEAR----SNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPIN 67
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324
A EIA + S AK + +++ P +L + V
Sbjct: 68 WHLTAAEIAYIVDDSGAKVLIVS------AALADTAAELAAELPAGVPLLLVVAGPVP-- 119
Query: 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV---NILFSSGTTGEPKAI 374
++ + ++ P P+ ++L+SSGTTG PK I
Sbjct: 120 ------GFRSYEEALAAQPDT--------PIADETAGADMLYSSGTTGRPKGI 158
|
Length = 502 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 32/200 (16%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA---D 265
+TY EL EQ +A L + GD +A+ + R + LA+ AG V I
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAV-LARNHRGFV--LALYAAGKVGARIILLNT 131
Query: 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 325
F+ ++A K + D ++ +L A P L A G +
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDD----------EFTDLLSALPPDLGRLRAWGGNP-DDD 180
Query: 326 REQDLSWKDFLSSVDYH-----PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS 380
+ + + P+P + ++ +SGTTG PK P + S
Sbjct: 181 EPSGSTDETLDDLIAGSSTAPLPKPPKPGGI---------VILTSGTTGTPKGAPRPEPS 231
Query: 381 SIRCTAEGWAHIDLKVGDVY 400
+ A + + + G+
Sbjct: 232 PLAPLAGLLSRVPFRAGETT 251
|
Length = 549 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
D S ++Y EL+ V +A L + +GD + + +P +V +I+LA++ G +V
Sbjct: 60 DSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIV 119
Query: 261 VSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
++ S + EI R+ FT P + L + I +P +
Sbjct: 120 TTMNPSSSLGEIKKRVVDCSVGLAFTS----------PENVEKLSPLGVPVIGVPENYDF 169
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
+ D+ P+P + D V I++SSGTTG K + T
Sbjct: 170 DSKRIEFPKFYEL-IKEDFDFVPKP----VIKQ--DDVAAIMYSSGTTGASKGVVLT 219
|
Length = 560 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 64/267 (23%), Positives = 98/267 (36%), Gaps = 46/267 (17%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVV--VSIADS 266
+TY E + V +A AL D G + I ++ ++ LA + AG VS A S
Sbjct: 81 VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA----IVLPAIG 318
+ + A +L+ + K + +F Q +++ L A L V
Sbjct: 141 LMSHDHA-KLKHLFDLVKPRVVFAQSG--------APFARALAALDLLDVTVVHVTGPGE 191
Query: 319 NDVGIPLREQDLSWKDFLSSVDY-HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
I DL+ ++V D V LF+SG+TG PKA+ T
Sbjct: 192 GIASIAFA--DLAATPPTAAVAAAIAAITP--------DTVAKYLFTSGSTGMPKAVINT 241
Query: 378 Q--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFL-NGATLALYQ 429
Q + + E P +L W MG F+ L G TL +
Sbjct: 242 QRMMCANIAMQEQ-LRPREPDPPP---PVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD 297
Query: 430 GSPLERSFGKFVQ---DAGVTVLGTVP 453
G PL F + ++ + TV G VP
Sbjct: 298 GKPLPGMFEETIRNLREISPTVYGNVP 324
|
Length = 624 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 70/307 (22%), Positives = 121/307 (39%), Gaps = 43/307 (14%)
Query: 156 DRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKEL 215
R S G W ++ + + C+ D T R A TY+EL
Sbjct: 10 PRRAASIAAGHWHDRTINDDLDACV-----ASCPDKTAVTAVRLGT---GAPRRFTYREL 61
Query: 216 REQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274
V VA L + +GD ++ +P ++YLA G V+ + F RE++
Sbjct: 62 AALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSF 121
Query: 275 RLRVSKAKG-IFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWK 333
L+ +++K + + F R F + P LPA+ + V + + S++
Sbjct: 122 MLKHAESKVLVVPKTF-----RGFDHAAMARRLRPE----LPALRHVVVVG-GDGADSFE 171
Query: 334 DFLSSVDYHPRPNYYSPVYNP---VDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAE 387
L + + P+ + + D V ++++SGTTGEPK + T +++I AE
Sbjct: 172 ALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE 231
Query: 388 GWAHIDLKVGDVYCWPTNLGWVMG-------PVILFSSFLNGATLALYQGSPLERSFGKF 440
+ L DV + + G PV+L GAT A+ Q +
Sbjct: 232 ---RLGLGADDVILMASPMAHQTGFMYGLMMPVML------GAT-AVLQDIWDPARAAEL 281
Query: 441 VQDAGVT 447
++ GVT
Sbjct: 282 IRTEGVT 288
|
Length = 547 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 30/191 (15%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
VA+V + R +TY EL E+ +A+ L GD + I + V L
Sbjct: 20 VALVCGDRR--------LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAML 71
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF-PLYSKVLGAAP-L 309
A V V++ + E+ L S A + + R+F P ++VL P L
Sbjct: 72 GAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYE-------REFAPRVAEVLPRLPKL 124
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP--VYNPVDAVVNILFSSGT 367
+ +V + + G L + ++D L++ SP +Y +L++ GT
Sbjct: 125 RTLV--VVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLY--------LLYTGGT 174
Query: 368 TGEPKAIPWTQ 378
TG PK + W Q
Sbjct: 175 TGMPKGVMWRQ 185
|
Length = 533 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ ++ +Q +A AL ++ GD IAI +I LAI +AG+V V + + A
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV---LPAIGNDVGIPLR 326
I L S AK +F K+ +KA V LP I L+
Sbjct: 68 ETIRYVLEHSDAKALFV--------------GKLDDWDAMKAGVPEGLPTIILFPYSTLK 113
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
+ W D L++ P P+ P + + I+++SGTTG+PK
Sbjct: 114 DHY-KWDDLLAA----TEPLQGRPLPEP-EDLATIVYTSGTTGQPK 153
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 13/164 (7%)
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 408
V + D + + F+SGTTG PK + T T W +DL+ D++ + GW
Sbjct: 77 VTSADDPAL-LYFTSGTTGLPKMVLHTHSYPLGHLVTGAYW--LDLRPDDLHWTIADPGW 133
Query: 409 VMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 465
G LF+ +L GA + +Y G ER+ ++ GVT P+ + + L
Sbjct: 134 AKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLEL-LERYGVTTFCAPPTAYRMLLQQD-L 191
Query: 466 EGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTE 508
D++ +R S GE N + D W A I + G TE
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWR--AATGLPIRDGYGQTE 233
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 51/203 (25%), Positives = 73/203 (35%), Gaps = 45/203 (22%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNL----GWVM 410
D I ++SGTTG PK T + + A L GD P L G V+
Sbjct: 2 DDPALIQYTSGTTGRPKGAMLTHRNVLN-NGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60
Query: 411 GPVILFSSFLNGATLALYQGSPLERSFGKF--------VQDAGVTVLGTVPSLVKAWRNT 462
G + +S GATL L + KF ++ +T L VP++ A
Sbjct: 61 G---VLASLTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIA---- 104
Query: 463 NCLEGLDWTK-----IRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQ 515
LE D+ K +R+ S G + V +L + + I G TE S Q
Sbjct: 105 -LLEHPDFDKFDLSSLRTGISGG--APVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ 161
Query: 516 GSLLQPQAFGAFSTATMTAGLVI 538
S P + T G +
Sbjct: 162 TSGDDP-----YEDRPGTVGRPL 179
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDV-YCWPT-NLGWVMG 411
D + L++SGTTG+PK + + AE +A + L+ GD + + +G
Sbjct: 91 DDIAYWLYTSGTTGKPKGVMHRHRDPL-TFAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149
Query: 412 PVILFSSFLNGATLALYQGSPL-ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW 470
+LF F GA+ L G P E + TVL VP+L +A + +
Sbjct: 150 NSLLFPLFS-GASAVLLPGWPTPEAVLDLLAR-HRPTVLFGVPALYRALLESGAGSAPLF 207
Query: 471 TKIRSFASTGE 481
+R S GE
Sbjct: 208 RSVRLCVSAGE 218
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 70/352 (19%), Positives = 122/352 (34%), Gaps = 85/352 (24%)
Query: 185 HRRKED------NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IA 237
H+ ED VA+V+ E +TY EL + +A+ L + + +
Sbjct: 1577 HQLIEDQAAATPEAVALVFGEQE--------LTYGELNRRANRLAHRLIALGVGPEVLVG 1628
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I + ++ V+ LAI+ AG V + + +A + S + + TQ + +
Sbjct: 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQA---RL 1685
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP-VD 356
PL L+++VL +Q+ W ++ + N P N
Sbjct: 1686 PL------PDGLRSLVL------------DQEDDW------LEGYSDSN---PAVNLAPQ 1718
Query: 357 AVVNILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405
+ ++++SG+TG PK + TQ + A+ DV W
Sbjct: 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWE-- 1776
Query: 406 LGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVKAW--- 459
LF +NGA L + R + +Q VT L VPS+++
Sbjct: 1777 ---------LFWPLINGARLVIAPPG-AHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826
Query: 460 --RNTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTE 508
+ + +R GE V+ WL + G TE
Sbjct: 1827 DEQVEHP------LSLRRVVCGGEALEVEALRPWLERLPD-TGLFNLYGPTE 1871
|
Length = 3956 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 31/192 (16%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTMFSK--GDAIAIDMPMTVRAVIIYLAIILAGYV 259
C + + ++Y ++R+ V+ AL T SK I I MP + A I Y A +L+G +
Sbjct: 38 CWDEQLGKLSYNQVRKAVI----ALATKVSKYPDQHIGIMMPASAGAYIAYFATLLSGKI 93
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPA 316
V I S RE+ + + T +++ + G P I +
Sbjct: 94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLA------QTHGEDAEYPFSLIYMEE 147
Query: 317 IGNDVGIPLREQDLSWKD-----FLSSVDYHPRPNYY-SPVYNPVDAVVNILFSSGTTGE 370
+ ++LS+ + S+ + ++ +P D V ILF+SGT
Sbjct: 148 V---------RKELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAV-ILFTSGTEKL 197
Query: 371 PKAIPWTQLSSI 382
PK +P T + +
Sbjct: 198 PKGVPLTHANLL 209
|
Length = 539 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-04
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG-----WVMGPVIL 415
++++SG+TG PK + + A L GD + W +
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWE-----I 152
Query: 416 FSSFLNGATLALY----QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471
F L+GATL L P + +++ +TVL VPSL++A + L
Sbjct: 153 FPPLLSGATLVLAPPEVLRDPEA--LAELLREHRITVLHLVPSLLRALLDALEPAAL--P 208
Query: 472 KIRSFASTGE 481
+R GE
Sbjct: 209 SLRLVIVGGE 218
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244
T I E V +Y EL E++ AN ++ KGD +A+ +
Sbjct: 18 DVYGHKTALIF--ESS--GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCP 73
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+ + + G ++V I E A L+ S+A + T P+Y ++
Sbjct: 74 EFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQ 127
Query: 305 --GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
A PL+ I L + D F P Y+P + D IL
Sbjct: 128 QEDATPLRHICLTRVALP-------ADDGVSSFTQLKAQQPATLCYAPPLS-TDDTAEIL 179
Query: 363 FSSGTTGEPKAI 374
F+SGTT PK +
Sbjct: 180 FTSGTTSRPKGV 191
|
Length = 517 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL + +A AL GD +A+ P + V++YLAI AG V V + S+ A
Sbjct: 13 TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72
Query: 270 REIA 273
E+A
Sbjct: 73 AELA 76
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY E+ A AL ++ KG + + +P I+ L I+ AG V +
Sbjct: 57 TYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALE 116
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
EI + + AK I T D Y KV G L IVL E
Sbjct: 117 SEIKKQAEAAGAKLIVTNDT---------NYGKVKGLG-LPVIVLGEEKI-------EGA 159
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ 378
++WK+ L + D + + + + FSSGTTG K + T
Sbjct: 160 VNWKELLEAADRAGDTSDNEEILQ--TDLCALPFSSGTTGISKGVMLTH 206
|
Length = 546 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 44/166 (26%), Positives = 60/166 (36%), Gaps = 25/166 (15%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY ELR +V VA L +A+ P +V AVI LA+ G V +
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + I RG + + V+ A V+ AI G +R
Sbjct: 89 PAEIA--------------ELIKRG----EMTAAVIAVD---AQVMDAI-FQSGSGVRVL 126
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 374
L L P P P + ++SGTTG PK
Sbjct: 127 ALGDLVGL-GEPESAGPPIEDPPREPEQPAF-VFYTSGTTGLPKGA 170
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVII 249
+ VA+V+ + +TY+EL E+ +A+ L GD +AI + + V+
Sbjct: 2 DAVAVVFGDQS--------LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVA 53
Query: 250 YLAIILAG--YVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
LA++ AG YV + A A R +A L S AK + T
Sbjct: 54 ILAVLKAGAAYVPLDPAYP-AER-LAYMLEDSGAKLLLTD 91
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E E+V +A AL S + I ++ ++ LA + AG Y VS A S
Sbjct: 70 LTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYS 129
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ +LR + +F D +++ L A + + A+ V
Sbjct: 130 LVSQDFG-KLRHVLELLTPGLVFADDG--------AAFARALAAVVPADVEVVAVRGAVP 180
Query: 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
+ L++ P + V D + LF+SG+TG PKA+ T
Sbjct: 181 GR---AATPFAALLAT----PPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTH 231
|
Length = 614 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 45/270 (16%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E QV +A AL + S + I ++ ++ LA + AG VS A S
Sbjct: 26 VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ A +LR + +F +D +++ L A L + + A+ G
Sbjct: 86 LLSKDFA-KLRHIFDLLTPGAVFAEDG--------AAFARALAALGLAGVPVVAVRGAPG 136
Query: 323 IP--LREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
P L+ P + V D V LF+SG+TG PKA+ T
Sbjct: 137 GPAIAFAALLA----------TPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTH 186
Query: 379 L---SSIRCTAEGWAHIDLKVGDVYCWPTNLGW--VMGPVILFSSFL-NGATLALYQGSP 432
++ A+ W + + + W L W G F+ L NG TL + G P
Sbjct: 187 RMLCANQAMIAQCWPFLTEEPPVLVDW---LPWNHTFGGNHNFNMVLYNGGTLYIDDGKP 243
Query: 433 LERSFGKFVQ---DAGVTVLGTVPSLVKAW 459
+ F + ++ + TV VP K +
Sbjct: 244 VPGLFEETLRNLREVSPTVYFNVP---KGF 270
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E+V +A L + GD +A+ + + + A+ G V V I +
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 270 REIATRLRVSKAKGIFT 286
E+A L S A+ I
Sbjct: 65 EELAHILDHSGARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 43/193 (22%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY EL +QV A L + GD +AI +P + ++ + A++ G VVV +
Sbjct: 58 TTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT 117
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV-------LPAIGN-D 320
A E+ A+ D + P ++ PL+ IV +P +
Sbjct: 118 AHELEHPFEDHGARVAIVWD------KVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLA 171
Query: 321 VGIPL------REQ-------DLSWKDFLSS-------VDYHPRPNYYSPVYNPVDAVVN 360
+ +P+ R + W+ + + HPRP D V
Sbjct: 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPT--------PDDVAL 223
Query: 361 ILFSSGTTGEPKA 373
IL++SGTTG+PK
Sbjct: 224 ILYTSGTTGKPKG 236
|
Length = 573 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E V +A L + KGD +A+ M + + VI Y AI+ AG VVV +
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+ L S A+ +
Sbjct: 62 EAELEHILNDSGARVLIVGS 81
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 47/190 (24%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+ + + A + ++ +TY +L+E +A +D++ I + M+
Sbjct: 13 QTQPDFPAYDYLGEK--------LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPE 64
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS---K 302
+ +L + AG+ + + S A I + V+K I + + PL
Sbjct: 65 MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATE-------ELPLEILGIP 117
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ LK I D ++ D NYY I+
Sbjct: 118 VITLDELKDIFATGNPYDFDHAVKGDD----------------NYY------------II 149
Query: 363 FSSGTTGEPK 372
F+SGTTG+PK
Sbjct: 150 FTSGTTGKPK 159
|
Length = 503 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++ EL ++ A L + GD +A+ M A + G V + F
Sbjct: 12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRK-FPLYSKVLGAAPLKAIVLPAIG-NDVGIPLR 326
EIA L S A+ + +L G P VL + P + A + +
Sbjct: 72 PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 374
+ W+ +L+ + Y P PV +++++SGTTG PK +
Sbjct: 131 AGAIDWEGWLAQ-----QEPYDGP---PVPQPQSMIYTSGTTGHPKGV 170
|
Length = 509 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-------- 412
IL++SGTTG PK + T + + L+ DV P
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVL-------LTPLPLFHINAQA 138
Query: 413 VILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKA 458
++++ L GATL L S F V+ G TV + ++
Sbjct: 139 YSVYAALLVGATLVLLPRFSA--SRFWDQVRKHGATVFNLLGAMAAI 183
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 221 LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
L A+ + +K D +++ P T ++ A+ +AG V+ I A IA LR +K
Sbjct: 52 LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111
Query: 281 AKGIFTQDFILRGGRKF-PLYSKVLGAAPLKAIVLPAIGNDVGIP---LREQDLSWKDFL 336
K +F R F PL +VL +L + +++ +P + E D +
Sbjct: 112 PKILFVD-------RSFEPLAREVLH-------LLSSEDSNLNLPVIFIHEIDFPKRPSS 157
Query: 337 SSVDY-------HPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
+DY P P+ + ++ D +++ ++SGTT +PK + + + T
Sbjct: 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS 217
Query: 388 ---GWAHIDLKVGDVYCW 402
GW ++ VY W
Sbjct: 218 AIIGW---EMGTCPVYLW 232
|
Length = 579 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 30/197 (15%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+E + +A++W +D +E + T+ +L++ AN + KGD + +T++
Sbjct: 28 DEEPDKLALIWCDDDGEEK---IFTFGDLKDYSNKAANFFKALGIGKGDTVM----LTLK 80
Query: 246 AVIIYLAIILA----GYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
+ +LA G + + A++I R+ + K I + G P +
Sbjct: 81 RRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMI-----VCIGEDGVPEH- 134
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD----YHPRPNYYSPVYNPVDA 357
+ AAP + VG P+ E W DF ++ RP D
Sbjct: 135 -IDEAAPECGSPTLLV--LVGDPVPE---GWIDFDKEIENASPDFERPT--GNDATCNDD 186
Query: 358 VVNILFSSGTTGEPKAI 374
++ + F+SGTTG PK +
Sbjct: 187 ILLVYFTSGTTGMPKMV 203
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 44/161 (27%), Positives = 60/161 (37%), Gaps = 20/161 (12%)
Query: 233 GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
GD +A+ M V+ LA A VVV + + E R + + A+ + D
Sbjct: 68 GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI-DADGP 126
Query: 293 GGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV- 351
R P PL V G G D P P +P
Sbjct: 127 HDRAEPTTR----WWPLTVNVGGDSGPSGGTLSVHLD---------AATEPTPATSTPEG 173
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGW 389
P DA+ I+F+ GTTG PK +PWT SS+R G+
Sbjct: 174 LRPDDAM--IMFTGGTTGLPKMVPWTHANIASSVRAIITGY 212
|
Length = 534 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+Y+EL+E AN L ++ KG+ + +P + + L + G V + +F
Sbjct: 2 SYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 270 REIATRLRVSKAKGIFTQDFILR 292
I RL + +AK + T +
Sbjct: 62 EPIRDRLELGEAKVLITTPELYE 84
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGW----- 408
+D I+F+SG+TG+PKA+ T + +A G A ++ L D W L
Sbjct: 76 LDRPATIIFTSGSTGKPKAVVHT-WGNHLASARGSAENLGLTPDD--NW---LLSLPLFH 129
Query: 409 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP 453
V G I+ S L G L L E + +++ GVT + VP
Sbjct: 130 VSGLAIVMRSLLAGGALVLPDKFDAEAI-AEALENHGVTHISLVP 173
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 34/166 (20%)
Query: 210 MTYKELREQVMLVANALDTMFSK-GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y+E+REQV+ +AN L K GD++A+ +P +V + AI+ AG + + +
Sbjct: 484 FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYP 543
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ L ++ + T L P ++ V L A PL+
Sbjct: 544 DDRLKMMLEDARPSLLITTADQL------PRFADVPDLTSLCYNAPLAPQG--AAPLQL- 594
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 374
+P+ Y I+F+SG+TG PK +
Sbjct: 595 --------------SQPH--HTAY--------IIFTSGSTGRPKGV 616
|
Length = 1296 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.95 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.88 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.88 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.85 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.8 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.7 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.7 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.44 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.15 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 99.13 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 98.56 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.15 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 93.79 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 80.21 |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-70 Score=607.40 Aligned_cols=546 Identities=60% Similarity=1.048 Sum_probs=454.0
Q ss_pred CCCcccccchHHHHhhCCCchHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCC
Q 008848 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIK 80 (551)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~ 80 (551)
|||++.++.+++|+++++..++++.|.++|+++..... ..-..++-.. ..+.|+|..+.+.|+|+.|.++-++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (728)
T PLN03052 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRAG-ASPPSIWRRI-SQSLLTPSHPFALHQLMYYSCYKNWDSDTL 81 (728)
T ss_pred ccCChhhcCHHHHHHcCCChHHHHHHHHHHHHHHHhhc-CCchHHHHHH-HHHhcCCCCCccHHHHhhhhcccCCCcccc
Confidence 79999999999999999999999999999999996665 3556677777 788999999999999988899989877655
Q ss_pred CCCccccCCcchhccccHHHHHHHhCCccccccCCCCccchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCC
Q 008848 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK 160 (551)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 160 (551)
++...|.|+.....++.+..+++..+.......|...+.+|+.|+++++++++.||..+++.+.+.|++++.++++..+.
T Consensus 82 ~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~ 161 (728)
T PLN03052 82 GPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDE 161 (728)
T ss_pred CCCCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCceeecCCCC
Confidence 56688999988888899988888765433333366667889999999999999999999999989999999999875323
Q ss_pred CCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEE
Q 008848 161 SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~ 239 (551)
..+..+||+++.+|++++|++++. +++||++|+++.+++..++..+++||+||+++++++|++|+++ +++||+|+++
T Consensus 162 ~~~~~~wf~g~~ln~~~~~l~~~~--~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~ 239 (728)
T PLN03052 162 SNPGGQWLPGAVLNVAECCLTPKP--SKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239 (728)
T ss_pred CCCCCEECCCCEeEHHHHHHHHHh--ccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 445679999999999999998754 5689999999976532234567899999999999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCC
Q 008848 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (551)
Q Consensus 240 ~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~ 319 (551)
++|++++++++|||+++|++++|++|.++++++.+++++++++++|+++.+.++++.++...++.+....+++++.....
T Consensus 240 ~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~ 319 (728)
T PLN03052 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGK 319 (728)
T ss_pred eCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999998877788788777776655555555544321
Q ss_pred CCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCE
Q 008848 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399 (551)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~ 399 (551)
...........+|++++.................++++++||+|||||||+||||+++|++++..+......++++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~ 399 (728)
T PLN03052 320 SVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDI 399 (728)
T ss_pred ccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcE
Confidence 11111112345677776543210001112222335689999999999999999999999998877766666688999999
Q ss_pred EEEecCcccchhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEee
Q 008848 400 YCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (551)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~g 479 (551)
++++++++|+++.+.++.+|++|++++++++.+++..+++++++++||++.++|++++.|.+.......++++||.+++|
T Consensus 400 ~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~ 479 (728)
T PLN03052 400 VCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479 (728)
T ss_pred EEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEec
Confidence 99999999999998888999999999999877777889999999999999999999999987654456789999999999
Q ss_pred cCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||+++++...|+...++..+++|.||+||++++++...+..+...+++|+|++|++++|+|++|+++|.|+
T Consensus 480 Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~ 550 (728)
T PLN03052 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDA 550 (728)
T ss_pred CCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCC
Confidence 99999999888887766568999999999986555444444556789999999999999999999999874
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-62 Score=615.07 Aligned_cols=494 Identities=17% Similarity=0.169 Sum_probs=393.3
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC-----Ccc
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-----PLY 85 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~-----~~~ 85 (551)
+.+|++++++.+.+|.++|++++++..++ +||++||++ |++.+++.|..+++|| ||+||++++..... ...
T Consensus 1405 NtlplR~~~~~~~t~~~~l~~v~~~~~~a~~hq~~p~~~-i~~~l~~~r~~~~~pL--Fq~~~~~~~~~~~~~~~~~~~~ 1481 (3956)
T PRK12467 1405 NTQVLRAEVDGQASFQQLLQQVKQAALEAQAHQDLPFEQ-LVEALQPERSLSHSPL--FQVMFNHQRDDHQAQAQLPGLS 1481 (3956)
T ss_pred eeeEEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHH-HHHHhcccccCCCCCc--eeEEEEeecccccccccCCCce
Confidence 44678899999999999999999998888 999999999 9999999999999999 99999998753221 111
Q ss_pred --ccCCcchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--ccCCCC
Q 008848 86 --WFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDK 160 (551)
Q Consensus 86 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~ 160 (551)
........++|||++.+.+.++++.+.+ |+. ++|++.+++++.++|.++++++..+++.+...+ +...+.
T Consensus 1482 ~~~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l~~~~~~~~ 1556 (3956)
T PRK12467 1482 VESLSWESQTAQFDLTLDTYESSEGLQASLTYAT-----DLFEASTIERLAGHWLNLLQGLVADPERRLGELDLLDEAER 1556 (3956)
T ss_pred eEeeecCCcccccceEEEEEecCCeEEEEEEEeC-----CcCCHHHHHHHHHHHHHHHHHHhhCccCceeeccccchHHh
Confidence 1111234678899988877777888888 999 999999999999999999999986655554432 333333
Q ss_pred CCCCCCcCCCCcchhhhhhccc--cccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEE
Q 008848 161 SKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~ 237 (551)
......|+.+........+++. ..+++++|+++|+++.++ .+||+||+++++++|++|+++ +++|++|+
T Consensus 1557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~ 1628 (3956)
T PRK12467 1557 RQILEGWNATHTGYPLARLVHQLIEDQAAATPEAVALVFGEQ--------ELTYGELNRRANRLAHRLIALGVGPEVLVG 1628 (3956)
T ss_pred hhhHHhhcCCccCCCccccHHHHHHHHHHhCCCCeEEEeCCc--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3334456654332222222222 235689999999999776 999999999999999999999 99999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCC
Q 008848 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI 317 (551)
Q Consensus 238 i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 317 (551)
|+++|++++++++|||+|+|++|+|+||.+|.+|+.+++++++++++|++..... .+........+.+...
T Consensus 1629 l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~ 1699 (3956)
T PRK12467 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQA---------RLPLPDGLRSLVLDQE 1699 (3956)
T ss_pred EEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhh---------hCccccCCcEEEeccc
Confidence 9999999999999999999999999999999999999999999999999875321 0100001112222110
Q ss_pred CCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCC
Q 008848 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (551)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (551)
.++..... ...+.....++++|||+|||||||+||||+++|+++++.+.+....++++++
T Consensus 1700 ---------------~~~~~~~~-----~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~ 1759 (3956)
T PRK12467 1700 ---------------DDWLEGYS-----DSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAA 1759 (3956)
T ss_pred ---------------cchhccCC-----CCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcc
Confidence 01111111 1112234467899999999999999999999999999999988888999999
Q ss_pred CEEEEecCcccchhhHHHHHHHHhCCEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccE
Q 008848 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS 475 (551)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~ 475 (551)
|++++++|++||++++++|.+|++|+++++.+.. .++..+++.|++++||++.++|++++.|.+... ...++++||.
T Consensus 1760 d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~ 1838 (3956)
T PRK12467 1760 DVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRR 1838 (3956)
T ss_pred cEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceE
Confidence 9999999999999999999999999999998642 478899999999999999999999999986422 2345789999
Q ss_pred EEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcC----CCCCcCccCCCCCCceEEEECCCCCccCCCCC
Q 008848 476 FASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYVRTFS 551 (551)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv~ 551 (551)
+++|||++++++.+.|.+.+++.+++|.||+||+++.++..... ......+||+|++|++++|+|++++++|+|+.
T Consensus 1839 v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~ 1918 (3956)
T PRK12467 1839 VVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVA 1918 (3956)
T ss_pred EEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCc
Confidence 99999999999999988888777899999999998765543221 11235789999999999999999999999973
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-58 Score=476.26 Aligned_cols=360 Identities=26% Similarity=0.394 Sum_probs=309.9
Q ss_pred CcCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCC
Q 008848 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMT 243 (551)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~~ 243 (551)
+|+.++.+|.+++|++++.. ...+|++|+++.++. +..+++||+||.+.++++|+.|++. + +||||+|+||+.
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~-~~~~~~~aii~~~e~---~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~ 75 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLE-ADRPDDTAIIFDGED---GLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNS 75 (528)
T ss_pred CCcCCceeechhhhhhhhhh-ccCCCceEEEEEcCC---CCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCC
Confidence 48999999999999998752 234899999998761 2227999999999999999999975 7 999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCC
Q 008848 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323 (551)
Q Consensus 244 ~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~ 323 (551)
+|.+++||||+|+||+++|+.+.++++.+++++++++++++|+++...+.++.++....+.+.... ++++....
T Consensus 76 pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~-~iv~~r~~----- 149 (528)
T COG0365 76 PEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS-VVVVPRLG----- 149 (528)
T ss_pred HHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc-eEEecccc-----
Confidence 999999999999999999999999999999999999999999999999999888887777665544 44443321
Q ss_pred CCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHH-HhhhhcCCCCCCEEEE
Q 008848 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCW 402 (551)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~ 402 (551)
..|+++...... ..+....+++|++||+|||||||+||||+++|++++.... .....+.+.++|++++
T Consensus 150 ------~~~~~~~~~~~~-----~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~ 218 (528)
T COG0365 150 ------LWYDEAVEKASE-----KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWN 218 (528)
T ss_pred ------ccHHHHhhccCC-----CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEe
Confidence 567777765443 2334457889999999999999999999999998765544 4445678889999999
Q ss_pred ecCcccchhhHH-HHHHHHhCCEEEEecCCCC--hhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEee
Q 008848 403 PTNLGWVMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (551)
Q Consensus 403 ~~~~~~~~~~~~-~~~~l~~G~~lvl~~~~~~--~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~g 479 (551)
.++++|.+|.+. +|++|++|++++++++.++ +..++++|++++||+++++|+.+++|.+......+++++||.+.++
T Consensus 219 ~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~Sa 298 (528)
T COG0365 219 SSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSA 298 (528)
T ss_pred CCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeecc
Confidence 999999999975 8999999999999987664 8899999999999999999999999998876667899999999999
Q ss_pred cCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||||+++.++|+.+.++ ++|.+.||+||++++.....+ +.+.++.|+|+||.++.|+|++|+++|+|.
T Consensus 299 GEPLnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~~~~~--~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~ 366 (528)
T COG0365 299 GEPLNPEAFEWFYSALG-VWILDIYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV 366 (528)
T ss_pred CCCCCHHHHHHHHHHhC-CCEeccccccccCccccCCCC--CcCCCCCCCCCCCceeEEECCCCCcCCCCc
Confidence 99999999999999987 999999999999966555444 445556699999999999999999999873
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-60 Score=596.71 Aligned_cols=492 Identities=21% Similarity=0.238 Sum_probs=391.4
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC--------
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-------- 82 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~-------- 82 (551)
+.++++++.+.+.+|.++|+++++...++ +||++||++ |++.+++.|..+.+|+ ||+||++++.....
T Consensus 340 Ntlplrv~~~~~~t~~~ll~~v~~~~~~a~~hq~~p~~~-l~~~l~~~~~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~ 416 (3956)
T PRK12467 340 NTQVLKAEVDPQASFLELLQQVKRTALGAQAHQDLPFEQ-LVEALQPERSLSHSPL--FQVMFNHQNTATGGRDREGAQL 416 (3956)
T ss_pred eeeeeEeecCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhCCCCCCCCCCc--eEEEEEeecccccccccccccC
Confidence 45788999999999999999999998887 999999999 9999999999999999 99999998754321
Q ss_pred -Cc--cccCCcchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--cc
Q 008848 83 -PL--YWFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LD 156 (551)
Q Consensus 83 -~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~ 156 (551)
.. ..........++||++.+.+.++++.+.+ |++ ++|++.+++++.++|.++++++..++..+...+ ++
T Consensus 417 ~~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~lf~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~l~~ 491 (3956)
T PRK12467 417 PGLTVEELSWARHTAQFDLALDTYESAQGLWAAFTYAT-----DLFEATTIERLATHWRNLLEAIVAEPRRRLGELPLLD 491 (3956)
T ss_pred CCceEEEeecCCCceeeeeEEEEEecCCcEEEEEEEec-----ccCCHHHHHHHHHHHHHHHHHHhhCcccceeccccCC
Confidence 00 01111234568899888877788888888 999 999999999999999999999886655554433 23
Q ss_pred CCCCCCCCCCcCCCCcchhhhhhccc--cccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCC
Q 008848 157 RTDKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKG 233 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~g 233 (551)
..++......|+...... ...+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|
T Consensus 492 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~pd~~Al~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g 562 (3956)
T PRK12467 492 AEERARELVRWNAPATEY-APDCVHQLIEAQARQHPERPALVFGEQ--------VLSYAELNRQANRLAHVLIAAGVGPD 562 (3956)
T ss_pred HHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCC
Confidence 222222234565443221 2222222 235689999999999877 999999999999999999999 9999
Q ss_pred CEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEE
Q 008848 234 DAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV 313 (551)
Q Consensus 234 d~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~v 313 (551)
++|+|+++|++++++++|||+|+|++|+|+||.+|.+++.+++++++++++++++.... ..........+.
T Consensus 563 ~~V~i~~~~s~~~vv~~lail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~---------~~~~~~~~~~~~ 633 (3956)
T PRK12467 563 VLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLA---------QLPVPAGLRSLC 633 (3956)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhh---------hcccccCccEEE
Confidence 99999999999999999999999999999999999999999999999999999874321 000000011111
Q ss_pred ecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC
Q 008848 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID 393 (551)
Q Consensus 314 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 393 (551)
+... .+...... ...+.....++++|||+|||||||+||||+++|+++.+.+.+....++
T Consensus 634 ~~~~---------------~~~~~~~~-----~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~ 693 (3956)
T PRK12467 634 LDEP---------------ADLLCGYS-----GHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ 693 (3956)
T ss_pred eccc---------------cccccccC-----CCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcC
Confidence 1110 00000000 011223456799999999999999999999999999999998888899
Q ss_pred CCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCC
Q 008848 394 LKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471 (551)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~ 471 (551)
++++|++++++|++|+.+++++|.+|+.|+++++++.. .++..+++.|++++||++.++|++++.|.+... .....
T Consensus 694 ~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~ 771 (3956)
T PRK12467 694 LAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASR--VALPR 771 (3956)
T ss_pred CCCCCEEEEecCccHhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhc--cccCC
Confidence 99999999999999999999999999999999998743 578899999999999999999999999987532 22356
Q ss_pred CccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCC---CCcCccCCCCCCceEEEECCCCCccCC
Q 008848 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP---QAFGAFSTATMTAGLVILDECGVPYVR 548 (551)
Q Consensus 472 sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~---~~~~~iG~p~~g~~v~IlD~~g~~vp~ 548 (551)
++|.+++|||++++++.+.|.+.+++++++|.||+||+++.++....... ....+||+|++|++++|+|++++++|+
T Consensus 772 ~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~ 851 (3956)
T PRK12467 772 PQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPLANLGLYILDHYLNPVPV 851 (3956)
T ss_pred cccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccccCCCCcccCCcCCCEEEEECCCCCCCCC
Confidence 78999999999999999999888777899999999999876554332211 123689999999999999999999999
Q ss_pred CCC
Q 008848 549 TFS 551 (551)
Q Consensus 549 Gv~ 551 (551)
|+.
T Consensus 852 G~~ 854 (3956)
T PRK12467 852 GVV 854 (3956)
T ss_pred CCc
Confidence 963
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-59 Score=596.31 Aligned_cols=493 Identities=17% Similarity=0.161 Sum_probs=390.0
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC-------C
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-------P 83 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~-------~ 83 (551)
+.++++++++++.+|.++|+++++...++ +||++||++ |++.+++.|..+++|+ ||+||++++..... .
T Consensus 340 n~lplr~~~~~~~tf~~~l~~v~~~~~~a~~hq~~p~~~-iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~ 416 (5163)
T PRK12316 340 NTQVLRSVFDGRTRVATLLAGVKDTVLGAQAHQDLPFER-LVEALKVERSLSHSPL--FQVMYNHQPLVADIEALDTVAG 416 (5163)
T ss_pred eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhCCCCCCCCCCc--EEEEEEeecccccccccccCCC
Confidence 34688999999999999999999998888 999999999 9999999999999999 99999998632111 1
Q ss_pred c--cccCCcchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--ccCC
Q 008848 84 L--YWFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRT 158 (551)
Q Consensus 84 ~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~ 158 (551)
. ...+......++||.+.+.+.++++.+.+ |+. ++|+..+++++.++|.++++++..+++.+...+ +...
T Consensus 417 ~~~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~~l~~~~~~ 491 (5163)
T PRK12316 417 LEFGQLEWKSRTTQFDLTLDTYEKGGRLHAALTYAT-----DLFEARTVERMARHWQNLLRGMVENPQARVDELPMLDAE 491 (5163)
T ss_pred ceEEeeccCCCccceeEEEEEEEcCCcEEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhccccccccCCCCCHH
Confidence 1 11122234567899888888888899998 999 999999999999999999999876555554433 2222
Q ss_pred CCCCCCCCcCCCCcchhhhhhccc--cccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCE
Q 008848 159 DKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~ 235 (551)
+.......|+..........+++. ..+++++||++|+++.++ ++||+||+++++++|+.|++. +++|++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~--------~~TY~eL~~~~~~lA~~L~~~gv~~g~~ 563 (5163)
T PRK12316 492 ERGQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEE--------TLDYAELNRRANRLAHALIERGVGPDVL 563 (5163)
T ss_pred HHHHHHHHhcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 211122345433211110112211 235689999999998776 999999999999999999999 999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEec
Q 008848 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP 315 (551)
Q Consensus 236 V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 315 (551)
|+|+++|++++++++|||+|+|++|+|+||.+|.+++.+++++++++++|++...... +........+.+.
T Consensus 564 V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~ 634 (5163)
T PRK12316 564 VGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRK---------LPLAAGVQVLDLD 634 (5163)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhh---------CCcccCceEEEec
Confidence 9999999999999999999999999999999999999999999999999998753210 0000011111111
Q ss_pred CCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCC
Q 008848 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (551)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 395 (551)
.. ........ .........++++|||+|||||||+||||+++|+++++.+.+....++++
T Consensus 635 ~~---------------~~~~~~~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~ 694 (5163)
T PRK12316 635 RP---------------AAWLEGYS-----EENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLG 694 (5163)
T ss_pred Cc---------------chhhccCC-----CCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCC
Confidence 00 00011110 01122344678999999999999999999999999999999988899999
Q ss_pred CCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC--CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCc
Q 008848 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (551)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~--~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sL 473 (551)
++|++++.+|++|+++++++|.+|+.|+++++++. ..++..+++.|++++||++.++|++++.|.+... ..++++|
T Consensus 695 ~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l 772 (5163)
T PRK12316 695 VGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSL 772 (5163)
T ss_pred CCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCc
Confidence 99999999999999999999999999999999863 3578899999999999999999999999986532 3357899
Q ss_pred cEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCc-CCCCCcCccCCCCCCceEEEECCCCCccCCCCC
Q 008848 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYVRTFS 551 (551)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv~ 551 (551)
|.+++|||++++++.+++.+.+++++++|.||+||+++.++.... .......+||+|++|++++|+|++|+++|+|+.
T Consensus 773 ~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~ 851 (5163)
T PRK12316 773 RRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVL 851 (5163)
T ss_pred cEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCc
Confidence 999999999999999999888877899999999999865433222 223345789999999999999999999999963
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=593.76 Aligned_cols=485 Identities=17% Similarity=0.183 Sum_probs=387.2
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCCC----cc-
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPP----LY- 85 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~~----~~- 85 (551)
+.+|++++++.+.+|.++|+++++...++ +||++||++ |++.+++.|+.+++|+ ||+||++++...... ..
T Consensus 2889 ntlPlrv~l~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~ 2965 (5163)
T PRK12316 2889 NTQVLRAQVDAQLAFRDLLGQVKEQALGAQAHQDLPFEQ-LVEALQPERSLSHSPL--FQVMYNHQSGERAAAQLPGLHI 2965 (5163)
T ss_pred cceeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHhccccccCCCCc--eeEEEeeeccccccccCCCcee
Confidence 45788999999999999999999998888 999999999 9999999999999999 999999987543221 11
Q ss_pred -ccCCcchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--ccCCCCC
Q 008848 86 -WFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKS 161 (551)
Q Consensus 86 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~ 161 (551)
.........++||.+.+.+.++++.+.+ |+. ++|++.+++++.++|.++++++...++.+...+ +...+..
T Consensus 2966 ~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~f~~lL~~l~~~p~~~i~~l~~~~~~~~~ 3040 (5163)
T PRK12316 2966 ESFAWDGAATQFDLALDTWESAEGLGASLTYAT-----DLFDARTVERLARHWQNLLRGMVENPQRSVDELAMLDAEERG 3040 (5163)
T ss_pred EeeeccCCccceeeEEEEEecCCcEEEEEEECc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCCchhhccCCCHHHHH
Confidence 1111234578899888887788888888 999 999999999999999999999875554443332 2221111
Q ss_pred CCCCCcCCCCcchhhhhhccc--cccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEE
Q 008848 162 KHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238 (551)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i 238 (551)
.....|+..........+++. ..+++++|+++|+.+.++ .+||+||+++++++|++|++. +++|++|+|
T Consensus 3041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l 3112 (5163)
T PRK12316 3041 QLLEAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQ--------RLSYAELNRRANRLAHRLIERGVGPDVLVGV 3112 (5163)
T ss_pred HHHHHhCCCCcCCCCcCCHHHHHHHHHHhCCCCeeEeeCCe--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 223356644332222222222 346689999999999877 999999999999999999999 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCC
Q 008848 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG 318 (551)
Q Consensus 239 ~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~ 318 (551)
+++|++++++++|||+|+|++|||+||.+|.+|+.++++++++++++++.... .+ ......++.+....
T Consensus 3113 ~~~~s~~~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~-----~~------~~~~~~~~~~~~~~ 3181 (5163)
T PRK12316 3113 AVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLR-----LP------LAQGVQVLDLDRGD 3181 (5163)
T ss_pred EccCCHHHHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCcccc-----CC------ccCCccEEEecccc
Confidence 99999999999999999999999999999999999999999999999986420 00 00011122221100
Q ss_pred CCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCC
Q 008848 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD 398 (551)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 398 (551)
... ....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|
T Consensus 3182 ------------------~~~-----~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d 3238 (5163)
T PRK12316 3182 ------------------ENY-----AEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGD 3238 (5163)
T ss_pred ------------------ccc-----cccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCccc
Confidence 000 001122345678999999999999999999999999999999888889999999
Q ss_pred EEEEecCcccchhhHHHHHHHHhCCEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEE
Q 008848 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476 (551)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i 476 (551)
+++++++++||.+++++|.+|+.|+++++.+.. .++..+.+.++++++|++.++|+++..+.+.. ....+++||.+
T Consensus 3239 ~~l~~~~~~fd~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~--~~~~~~~lr~~ 3316 (5163)
T PRK12316 3239 RVLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEE--DAHRCTSLKRI 3316 (5163)
T ss_pred EEEeecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcc--ccccCCcceEE
Confidence 999999999999999999999999999997632 36788999999999999999999999987643 22346899999
Q ss_pred EeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCCCC
Q 008848 477 ASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRTFS 551 (551)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv~ 551 (551)
++|||++++++.++|.. +.+++|.|||||+++.++..... .....++||+|++|++++|+|++|+++|+|+.
T Consensus 3317 ~~gGe~l~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~ 3389 (5163)
T PRK12316 3317 VCGGEALPADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPVPVGAL 3389 (5163)
T ss_pred EEccccCCHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEEECCCCCCCCCCCC
Confidence 99999999999998872 36899999999999866543332 22345799999999999999999999999973
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=545.53 Aligned_cols=485 Identities=16% Similarity=0.129 Sum_probs=370.6
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCCCc---ccc
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPL---YWF 87 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~~~---~~~ 87 (551)
+.+|++++.+.+.+|.++++++++...++ +||++||++ |++.++ +..+.+|+ ||++|++++....... ...
T Consensus 295 ntlplr~~~~~~~tf~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~--~~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~ 369 (1296)
T PRK10252 295 NVLPLRVHIAAQETLPELATRLAAQLKKMRRHQRYDAEQ-IVRDSG--RAAGDEPL--FGPVLNIKVFDYQLDFPGVQAQ 369 (1296)
T ss_pred ceEEEEEecCCCCCHHHHHHHHHHHHHHHHhhcCCCHHH-HHHHhc--CccCCCCc--eeEEEEeeecccccCcCCccce
Confidence 46788899889999999999999998888 999999999 999985 45567788 9999998765421111 000
Q ss_pred -CCcchhccccHHHHHH-HhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--ccCCCCCC
Q 008848 88 -PSLDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSK 162 (551)
Q Consensus 88 -~~~~~~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~ 162 (551)
........+|+.+.+. ..++++.+.+ |+. ++|++.+++++.++|..+++++...+..+...+ +...+...
T Consensus 370 ~~~~~~~~~~dl~l~~~~~~~~~l~~~~~y~~-----~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~~~~~~~~~~~ 444 (1296)
T PRK10252 370 THTLATGPVNDLELALFPDEHGGLSIEILANP-----QRYDEATLIAHAERLKALIAQFAADPALLCGDVDILLPGEYAQ 444 (1296)
T ss_pred eeecCCCccCCeEEEEEECCCCcEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhcCCCCHHHHHH
Confidence 0001112346666654 3346677888 998 999999999999999999999875544443322 11111111
Q ss_pred CCCCcCCCCcchh---hhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEE
Q 008848 163 HGGTWLPGSVLNI---AECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238 (551)
Q Consensus 163 ~~~~~~~~~~~~~---~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i 238 (551)
...|+....... ....+ ..+++++||++|+++.+. .+||+||+++++++|+.|.+. +++||+|+|
T Consensus 445 -~~~~~~~~~~~~~~~l~~~~--~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l 513 (1296)
T PRK10252 445 -LAQVNATAVEIPETTLSALV--AQQAAKTPDAPALADARY--------QFSYREMREQVVALANLLRERGVKPGDSVAV 513 (1296)
T ss_pred -HHHhcCCCCCCCcCCHHHHH--HHHHHhCCCCeEEEcCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 223332221111 11122 235578999999998776 899999999999999999999 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCC
Q 008848 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG 318 (551)
Q Consensus 239 ~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~ 318 (551)
+++|++++++++|||+++|++|+|+||.+|.+++.++++++++++++++...... +.. .. ...++.
T Consensus 514 ~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~---------~~~-~~-~~~~~~--- 579 (1296)
T PRK10252 514 ALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPR---------FAD-VP-DLTSLC--- 579 (1296)
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhh---------ccc-CC-Cceeee---
Confidence 9999999999999999999999999999999999999999999999998753211 000 00 000110
Q ss_pred CCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCC
Q 008848 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD 398 (551)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 398 (551)
+........ ........++++|||+|||||||+||||+++|+++++.+.+....++++++|
T Consensus 580 -------------~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d 640 (1296)
T PRK10252 580 -------------YNAPLAPQG------AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADD 640 (1296)
T ss_pred -------------ccccccccc------CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCC
Confidence 000000000 0011123568999999999999999999999999999999998899999999
Q ss_pred EEEEecCcccchhhHHHHHHHHhCCEEEEecC--CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccC--CCCCCCcc
Q 008848 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIR 474 (551)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~--~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~sLr 474 (551)
++++.+|++|+.+++++|.+|+.|+++++.+. ..++..+++.|++++||++.++|++++.+++..... ...++++|
T Consensus 641 ~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr 720 (1296)
T PRK10252 641 VVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLR 720 (1296)
T ss_pred EEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCcc
Confidence 99999999999999999999999999999763 347889999999999999999999999988653222 12468999
Q ss_pred EEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCC------CCCcCccCCCCCCceEEEECCCCCccCC
Q 008848 475 SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQAFGAFSTATMTAGLVILDECGVPYVR 548 (551)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------~~~~~~iG~p~~g~~v~IlD~~g~~vp~ 548 (551)
.+++|||++++++.+.+.+.++ ++++|.||+||+++.++...... .....+||+|++|++++|+|++++++|+
T Consensus 721 ~i~~gGe~l~~~~~~~~~~~~~-~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~ 799 (1296)
T PRK10252 721 QVFCSGEALPADLCREWQQLTG-APLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPP 799 (1296)
T ss_pred EEEEecCCCCHHHHHHHHhcCC-CEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCC
Confidence 9999999999999998887654 78999999999987554432211 2345689999999999999999999999
Q ss_pred CCC
Q 008848 549 TFS 551 (551)
Q Consensus 549 Gv~ 551 (551)
|+.
T Consensus 800 g~~ 802 (1296)
T PRK10252 800 GVA 802 (1296)
T ss_pred CCc
Confidence 973
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=482.25 Aligned_cols=426 Identities=19% Similarity=0.231 Sum_probs=329.8
Q ss_pred ccchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEE
Q 008848 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVW 197 (551)
Q Consensus 118 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~ 197 (551)
+.+|+.++++++++++.||..+++.+ ++|.+++.++++. .....+||.++.+|.++++++++.....+||++|+++
T Consensus 7 ~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~---~~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~ 82 (647)
T PTZ00237 7 PFDYENDSNYANSNPESFWDEVAKKY-VHWDKMYDKVYSG---DEIYPDWFKGGELNTCYNVLDIHVKNPLKRDQDALIY 82 (647)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhc-CeeeCCcccccCC---CCCchhhCCCCeeeHHHHHHHHhhcccCCCCceEEEE
Confidence 35689999999999999999999997 6999999999864 2233799999999999999987642123799999998
Q ss_pred ecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHH
Q 008848 198 REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRL 276 (551)
Q Consensus 198 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l 276 (551)
.... .+..+++||+||+++++++|+.|+++ |++||+|+|+++|++|+++++|||+++||+++|+++.++.+++.++|
T Consensus 83 ~~~~--~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l 160 (647)
T PTZ00237 83 ECPY--LKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRI 160 (647)
T ss_pred EcCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHH
Confidence 6431 12346899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEEeecceeccCccccchhHHhhcC------CCceEEecCCCCC--C------CCCCCCCCcchHHhhccCCCC
Q 008848 277 RVSKAKGIFTQDFILRGGRKFPLYSKVLGAA------PLKAIVLPAIGND--V------GIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 277 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~------~~~~~vv~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~ 342 (551)
++++++++|+++...+.++.++....+.+.. ..+++++...... . .....+....|++++......
T Consensus 161 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (647)
T PTZ00237 161 ETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKEN 240 (647)
T ss_pred HhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccc
Confidence 9999999999886655555444443332221 1233333221100 0 000111234566665432110
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchh-hHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
............++|++||+|||||||+||||+++|++ +++........+....++++++.++++|+++...++.+|+.
T Consensus 241 ~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~ 320 (647)
T PTZ00237 241 NQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSL 320 (647)
T ss_pred cCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhC
Confidence 00111122345678999999999999999999999998 44433333445667788999999999999877778899999
Q ss_pred CCEEEEecCCC-C----hhhHHHHHHHcCCcEEEecHHHHHHHHhcCc-----cCCCCCCCccEEEeecCCCChhhHHHH
Q 008848 422 GATLALYQGSP-L----ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----LEGLDWTKIRSFASTGETSNVDDDLWL 491 (551)
Q Consensus 422 G~~lvl~~~~~-~----~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~-----~~~~~l~sLr~i~~gGe~l~~~~~~~~ 491 (551)
|++++++++.+ . +..+++.|++++||++.++|++++.|++... ....++++||.+++|||++++++.+++
T Consensus 321 G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~ 400 (647)
T PTZ00237 321 GNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI 400 (647)
T ss_pred CcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHH
Confidence 99999987532 2 5679999999999999999999999987532 234578999999999999999999999
Q ss_pred HHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 492 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++.++ ++++|.||+||++++++..........+++|+|++|++++|+|++|+++|+|.
T Consensus 401 ~~~~g-~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge 458 (647)
T PTZ00237 401 ENKLK-IKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNE 458 (647)
T ss_pred HHhcC-CCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCC
Confidence 88876 89999999999986544332222233478999999999999999999998874
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=581.62 Aligned_cols=490 Identities=14% Similarity=0.110 Sum_probs=378.6
Q ss_pred HHHhhCCCchHH---HHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCCCc---
Q 008848 12 DLMKVGLKLEEA---EEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPL--- 84 (551)
Q Consensus 12 ~~~~~~~~~~~~---~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~~~--- 84 (551)
+.+++|++.+++ .++.++|+++++...++ +||++||++ |++..+.. +..+| ||++|+++|.+.....
T Consensus 3551 Ntlp~Rv~~~~~~~~~t~~~~L~~v~~~~~~~~~~q~~~l~~-i~~~~~~~---~~~~L--F~t~~v~~n~~~~~~~~~~ 3624 (4334)
T PRK05691 3551 NSIALRVQLPAAGQRCSVRQWLQGLLDSNMELREYEYLPLVA-IQECSELP---KGQPL--FDSLFVFENAPVEVSVLDR 3624 (4334)
T ss_pred cccceEEeeCCccCCCcHHHHHHHHHHHHHHHhhccCCCHHH-HHHHhcCC---CCCCC--ccEEEEeecCCcchhhhcc
Confidence 346788888654 59999999999998887 999999999 99877543 33578 9999999987532210
Q ss_pred ---cc--cCCcchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--cc
Q 008848 85 ---YW--FPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LD 156 (551)
Q Consensus 85 ---~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~ 156 (551)
.. ........+|+|++.+.. ++.+.+.+ |++ +.|++.+++++.++|.++++++...+..+...+ +.
T Consensus 3625 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~l~~~l~y~~-----~~~~~~~~~~l~~~f~~~L~~l~~~~~~~~~~~~~~~ 3698 (4334)
T PRK05691 3625 AQSLNASSDSGRTHTNFPLTAVCYP-GDDLGLHLSYDQ-----RYFDAPTVERLLGEFKRLLLALVQGFHGDLSELPLLG 3698 (4334)
T ss_pred cccccccccccccccCCCeEEEEec-CCceEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhCcCCChhhcCCCC
Confidence 00 011123456666664433 45677778 998 999999999999999999999875555444333 22
Q ss_pred CCCCCCCCCCcCCCCcchhhhhhccc--cccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCC
Q 008848 157 RTDKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKG 233 (551)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~g 233 (551)
..+.......|+..........+++. ..+++++||++|+++.+. .+||+||+++++++|++|++. |++|
T Consensus 3699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~~tY~eL~~~~~~la~~L~~~gv~~~ 3770 (4334)
T PRK05691 3699 EQERDFLLDGCNRSERDYPLEQSYVRLFEAQVAAHPQRIAASCLDQ--------QWSYAELNRAANRLGHALRAAGVGVD 3770 (4334)
T ss_pred HHHHHHHHHhhCCccCCCccccCHHHHHHHHHHhCCCceEEEcCCC--------cccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 22222223456554333323333332 346799999999999887 999999999999999999999 9999
Q ss_pred CEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC---Cc
Q 008848 234 DAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LK 310 (551)
Q Consensus 234 d~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~ 310 (551)
++|+|++++|+++++++|||+|+|++||||||.+|.+|+.+|+++++++++|+++.... ....+..... ..
T Consensus 3771 ~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~ 3844 (4334)
T PRK05691 3771 QPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACRE------QARALLDELGCANRP 3844 (4334)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccc------hhhhhhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999886421 1111111110 00
Q ss_pred eEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh
Q 008848 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA 390 (551)
Q Consensus 311 ~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~ 390 (551)
.+++ +++...... ....+.....++++|||+|||||||+||||+++|+++++.+.+...
T Consensus 3845 ~~~~-----------------~~~~~~~~~----~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~ 3903 (4334)
T PRK05691 3845 RLLV-----------------WEEVQAGEV----ASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVP 3903 (4334)
T ss_pred ceee-----------------ecccccccc----cccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHH
Confidence 1111 011100000 0111223456799999999999999999999999999999998888
Q ss_pred hcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCC
Q 008848 391 HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 468 (551)
Q Consensus 391 ~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~ 468 (551)
.++++++|+++++++++||.+++++|.+|+.|+++++++.. .++..+++.|++++||++.++|++++.+++.. ..
T Consensus 3904 ~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~ 3980 (4334)
T PRK05691 3904 YLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQ 3980 (4334)
T ss_pred hcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cc
Confidence 89999999999999999999999999999999999998743 36789999999999999999999999987643 23
Q ss_pred CCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcC---CCCCcCccCCCCCCceEEEECCCCCc
Q 008848 469 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVP 545 (551)
Q Consensus 469 ~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~g~~v~IlD~~g~~ 545 (551)
.+++||.+++|||++++++.+.|.+.+++++++|.||||||++.++..... ......+||+|++|++++|+|+++++
T Consensus 3981 ~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~ 4060 (4334)
T PRK05691 3981 ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALEL 4060 (4334)
T ss_pred cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCC
Confidence 478999999999999999999998888888999999999999765443221 12234689999999999999999999
Q ss_pred cCCCCC
Q 008848 546 YVRTFS 551 (551)
Q Consensus 546 vp~Gv~ 551 (551)
+|.|+.
T Consensus 4061 ~p~g~~ 4066 (4334)
T PRK05691 4061 VPLGAV 4066 (4334)
T ss_pred CCCCCc
Confidence 999974
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=581.39 Aligned_cols=493 Identities=13% Similarity=0.091 Sum_probs=383.6
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC-----Cc-
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-----PL- 84 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~-----~~- 84 (551)
+.+|++++++.+.+|.+++++++++..++ +||++||++ |++.+++.|..+++|+ ||+||++++..... ..
T Consensus 2019 ntlPlrv~~~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~ 2095 (4334)
T PRK05691 2019 NTQVLRCQLDGQMSVSELLEQVRQTVIEGQSHQDLPFDH-LVEALQPPRSAAYNPL--FQVMCNVQRWEFQQSRQLAGMT 2095 (4334)
T ss_pred eeeeEEeecCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccccCCCCc--eEEEEEeeccccccccCCCCce
Confidence 45788999999999999999999998888 999999999 9999999999999999 99999998643211 11
Q ss_pred -cccCCcchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--ccCCCC
Q 008848 85 -YWFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDK 160 (551)
Q Consensus 85 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~ 160 (551)
..........+|||.+.+.+.++++.+.+ |+. ++|++.+++++.++|.++++++...++.+...+ +...+.
T Consensus 2096 ~~~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 2170 (4334)
T PRK05691 2096 VEYLVNDARATKFDLNLEVTDLDGRLGCCLTYSR-----DLFDEPRIARMAEHWQNLLEALLGDPQQRLAELPLLAAAEQ 2170 (4334)
T ss_pred eEeecccCCccccceEEEEEecCCcEEEEEEECc-----ccCCHHHHHHHHHHHHHHHHHHHhhhcCChhhccCCcHHHH
Confidence 11112234578898888877778888888 998 999999999999999999999875554443222 222111
Q ss_pred CCCCCCcCCCCcchhhhhhccc--cccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEE
Q 008848 161 SKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237 (551)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~ 237 (551)
......|+..........+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++|+
T Consensus 2171 ~~l~~~~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~Gv~~g~~V~ 2242 (4334)
T PRK05691 2171 QQLLDSLAGEAGEARLDQTLHGLFAAQAARTPQAPALTFAGQ--------TLSYAELDARANRLARALRERGVGPQVRVG 2242 (4334)
T ss_pred HHHHHHhCCCCcCCCcccchHHHHHHHHHHCCCCeEEEeCCe--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 1111223322211111222222 235689999999998776 999999999999999999999 99999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc--eEEec
Q 008848 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLP 315 (551)
Q Consensus 238 i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~vv~ 315 (551)
++++|++++++++|||+|+|++|||+||.+|.+|+.+++++++++++|++..... .+. ..... .+.+.
T Consensus 2243 l~~~~s~~~vv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~---------~~~-~~~~~~~~~~~~ 2312 (4334)
T PRK05691 2243 LALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFE---------ALG-ELPAGVARWCLE 2312 (4334)
T ss_pred EEeCCCHHHHHHHHHHHHhCcEeecCCCCChHHHHHHHHHhcCCCEEEeChhhhh---------hhc-cccccceeEEec
Confidence 9999999999999999999999999999999999999999999999999875321 110 00000 11111
Q ss_pred CCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCC
Q 008848 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (551)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 395 (551)
.. ...+ ..... ........++++|||+|||||||+||||+++|+++.+.+.+....++++
T Consensus 2313 ~~--------------~~~~-~~~~~-----~~~~~~~~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~~ 2372 (4334)
T PRK05691 2313 DD--------------AAAL-AAYSD-----APLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMR 2372 (4334)
T ss_pred cc--------------hhhh-hcCCC-----CCCCCCCCCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCC
Confidence 00 0000 00000 0111223468999999999999999999999999999988888889999
Q ss_pred CCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCcc
Q 008848 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 474 (551)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~-~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr 474 (551)
++|+++++++++|+.+++++|.+|+.|+++++.+. ..++..+++.|++++||++.++|++++.|.+.... .....++|
T Consensus 2373 ~~d~~l~~~~~~fd~~~~~i~~~L~~G~~lvl~~~~~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~-~~~~~~lr 2451 (4334)
T PRK05691 2373 ADDCELHFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAG-QGEQLPVR 2451 (4334)
T ss_pred cccEEEEecCccHHHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhc-cccCCCce
Confidence 99999999999999999999999999999999763 34788999999999999999999999999765322 23456899
Q ss_pred EEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcC----CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 475 SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.+++|||++++++.+++...++...++|.||+||++++.+.+... ......+||+|++|+.++|+|++++++|+|+
T Consensus 2452 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~pi~~~~~~i~d~~~~~vp~G~ 2531 (4334)
T PRK05691 2452 MCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGA 2531 (4334)
T ss_pred EEEEccccCCHHHHHHHHHhCCCceEEeCcCCCcceEEEEEeecccccccCCCCCccccccCCCEEEEECCCCCCCCCCC
Confidence 999999999999999998888767899999999998654332211 1122357999999999999999999999996
Q ss_pred C
Q 008848 551 S 551 (551)
Q Consensus 551 ~ 551 (551)
.
T Consensus 2532 ~ 2532 (4334)
T PRK05691 2532 T 2532 (4334)
T ss_pred c
Confidence 3
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-57 Score=535.16 Aligned_cols=510 Identities=15% Similarity=0.101 Sum_probs=375.0
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhH-HHHHHhhcccccCCCCCCccccCC
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQ-LVYYSVYNDWDASIKGPPLYWFPS 89 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~-l~~fq~~~~~~~~~~~~~~~~~~~ 89 (551)
+.++++++++.+.+|.++|++++++..++ +||++||++ |++.+++.|..+++| + ||++|..+..... . .
T Consensus 80 ~~lplr~~~~~~~t~~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~~~~~~~~~p~l--f~~~~~~~~~~~~--~----~ 150 (1389)
T TIGR03443 80 RPFVLRLNITPELSFLQLYAKVSEEEKEGASDIGVPFDE-LSEHIQAAKKLERTPPL--FRLAFQDAPDNQQ--T----T 150 (1389)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccCCCCCCcc--EEEEeecCCcccc--c----c
Confidence 56789999999999999999999998888 999999999 999999999888887 6 9977754332111 0 1
Q ss_pred cchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--ccCCCCCCC---
Q 008848 90 LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKH--- 163 (551)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~--- 163 (551)
.....++||.+.+.+.++++.+.+ |+. ++|++.+++++.++|..+++++...++.+...+ +...+....
T Consensus 151 ~~~~~~~dl~~~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~~~~~~~~~~~~~~ 225 (1389)
T TIGR03443 151 YSTGSTTDLTVFLTPSSPELELSIYYNS-----LLFSSDRITIVADQLAQLLSAASSNPDEPIGKVSLITPSQKSLLPDP 225 (1389)
T ss_pred cccCCccceEEEEEecCCcEEEEEEEch-----hcCCHHHHHHHHHHHHHHHHHHHhCcCCceecccCCCHHHHhhhhcc
Confidence 134567888888877788888888 998 999999999999999999999875555554332 221111100
Q ss_pred --CCCcCCCCcchhhhhhccccccCCCCCCceEEEEecCC-CCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEE
Q 008848 164 --GGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239 (551)
Q Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~ 239 (551)
...|... .......+. .+++++||++|+++.... +.....+++||+||+++++++|++|++. +++||+|+|+
T Consensus 226 ~~~~~~~~~--~~~l~~~~~--~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~ 301 (1389)
T TIGR03443 226 TKDLDWSGF--RGAIHDIFA--DNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIY 301 (1389)
T ss_pred ccccCcCcc--cCcHHHHHH--HHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 0123210 011122232 245889999999864210 0012345899999999999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc-C---C-CceEEe
Q 008848 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-A---P-LKAIVL 314 (551)
Q Consensus 240 ~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~vv 314 (551)
++|++++++++|||+|+|++++|+||.+|.+++.++++++++++++++.... ............ . . ...+.+
T Consensus 302 ~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1389)
T TIGR03443 302 AYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAG---TLDQLVRDYIDKELELRTEIPALAL 378 (1389)
T ss_pred ecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEecccc---ccchhhhhhhhcccccccccceEEe
Confidence 9999999999999999999999999999999999999999999999876421 000111111000 0 0 000111
Q ss_pred cCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCC
Q 008848 315 PAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL 394 (551)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~ 394 (551)
........ ........+....... ...........++++|||+|||||||.||||+++|+++.+.+.+....+++
T Consensus 379 ~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~ 453 (1389)
T TIGR03443 379 QDDGSLVG---GSLEGGETDVLAPYQA--LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGL 453 (1389)
T ss_pred cccccccc---cccccccccccccccc--cccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCC
Confidence 10000000 0000000011100000 000011123457899999999999999999999999999998888888999
Q ss_pred CCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCC
Q 008848 395 KVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (551)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~s 472 (551)
.++|++++.++++|+.+++++|.+|+.|+++++.+.. .++..+++.|++++||++.++|++++.|.... ...+++
T Consensus 454 ~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~ 530 (1389)
T TIGR03443 454 SENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPS 530 (1389)
T ss_pred CCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCC
Confidence 9999999999999999999999999999999997642 25778999999999999999999999987542 234789
Q ss_pred ccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCC----------CCCcCccCCCCCCceEEEECCC
Q 008848 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDEC 542 (551)
Q Consensus 473 Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~g~~v~IlD~~ 542 (551)
||.+++|||++++...+++....++++++|.||+||++++++...... .....++|+|++|++++|+|++
T Consensus 531 lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~ 610 (1389)
T TIGR03443 531 LHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRN 610 (1389)
T ss_pred ccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCc
Confidence 999999999999999888887777789999999999986544322110 1134689999999999999965
Q ss_pred --CCccCCCC
Q 008848 543 --GVPYVRTF 550 (551)
Q Consensus 543 --g~~vp~Gv 550 (551)
++++|+|.
T Consensus 611 ~~~~~~~~G~ 620 (1389)
T TIGR03443 611 DRTQTCGVGE 620 (1389)
T ss_pred cCCCcCCCCC
Confidence 57899886
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=472.41 Aligned_cols=417 Identities=22% Similarity=0.367 Sum_probs=331.0
Q ss_pred chHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEEec
Q 008848 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWRE 199 (551)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~ 199 (551)
+|+.+++++++++..||..+++. +.|.+++.++++.. ..+..+||.++.+|.++++++++. +.+|+++|+++.+
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~~~ 75 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARR--IDWQTPPQRILDYS--NPPFARWFAGGRTNLCHNALDRHL--DERGEQLALVTVS 75 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHh--CCeecCCcccccCC--CCCcCccCCCCEeeHHHHHHHHHh--CcCCCCeEEEEEc
Confidence 47889999999999999999998 57999999987542 234679999999999999998754 6789999999854
Q ss_pred CCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHh
Q 008848 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278 (551)
Q Consensus 200 ~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~ 278 (551)
. ..+..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++
T Consensus 76 ~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~ 153 (628)
T TIGR02316 76 S--ETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDD 153 (628)
T ss_pred C--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHh
Confidence 2 123456899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEeecceeccCccccchhHHhh---c---CCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCC
Q 008848 279 SKAKGIFTQDFILRGGRKFPLYSKVLG---A---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (551)
Q Consensus 279 ~~~~~vl~~~~~~~~~~~~~~~~~~~~---~---~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (551)
++++++|+++...+.++.++....+.+ . ....++++....... .........|+++...... ...+...
T Consensus 154 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~ 228 (628)
T TIGR02316 154 ATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM-RLIPGRDVDYAALRTQHED----AQVPVEW 228 (628)
T ss_pred cCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCccccHHHHhhcccc----CCCCcee
Confidence 999999999876666665554443322 1 122334443221110 0011123456665543211 1112223
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecchhhHH-HHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEEecC
Q 008848 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQG 430 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~~~ 430 (551)
..+++++||+|||||||.||||+++|++++. ........++++++|++++.++++|+++. +.++.+|+.|++++++++
T Consensus 229 ~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~ 308 (628)
T TIGR02316 229 LESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308 (628)
T ss_pred cCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCC
Confidence 4678999999999999999999999999753 34445556789999999999999999986 568899999999999875
Q ss_pred ---CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecccc
Q 008848 431 ---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (551)
Q Consensus 431 ---~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (551)
.+++..++++|++++||++.++|++++.|.+... ....++++||.+++|||++++++.++++..++ .+++|.||
T Consensus 309 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~~yG 387 (628)
T TIGR02316 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG-KPVIDNYW 387 (628)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhC-CCEEeccc
Confidence 3467889999999999999999999999987542 23457899999999999999999999888775 78999999
Q ss_pred ccccccccccCCcC---CCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 506 GTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 506 ~TE~~~~~~~~~~~---~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
+||++..++..... .+...+++|+|++|++++|+|+ +|+++|+|.
T Consensus 388 ~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~ 436 (628)
T TIGR02316 388 QTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNE 436 (628)
T ss_pred ccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCC
Confidence 99998543332221 2345678999999999999998 799999875
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=474.83 Aligned_cols=422 Identities=23% Similarity=0.315 Sum_probs=327.7
Q ss_pred cchHHHHHHhhhChHHHHHHHHhhccceeeccc--cccccCCC---CCCCCCCcCCCCcchhhhhhccccccCCCCCCce
Q 008848 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAP--KCILDRTD---KSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (551)
Q Consensus 119 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~--~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~ 193 (551)
.+|+.++++++++++.||..+++.+ .|..++ .++++... ......+||.++.+|.++++++++. .+.+|+++
T Consensus 30 ~~y~~~~~~s~~~~~~fw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~~~~l~~~~-~~~~~~~~ 106 (666)
T PLN02654 30 QQYMEMYKRSVDDPAGFWSDIASQF--YWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNICYNCLDRNV-EAGNGDKI 106 (666)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhC--CeecCCCcceEeccCCCcccCCccccccCCCEeeHHHHHHHHhh-ccCCCCCE
Confidence 4679999999999999999999985 566665 35653211 1123569999999999999998754 13589999
Q ss_pred EEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHH
Q 008848 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (551)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l 272 (551)
|+++.+. ..+..+++||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++
T Consensus 107 Al~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l 184 (666)
T PLN02654 107 AIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESL 184 (666)
T ss_pred EEEEEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHH
Confidence 9998543 123456899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEeecceeccCccccchhHHhhcCC--------Cc-eEEecCCCC--CCCCCC-CCCCcchHHhhccCC
Q 008848 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--------LK-AIVLPAIGN--DVGIPL-REQDLSWKDFLSSVD 340 (551)
Q Consensus 273 ~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~vv~~~~~--~~~~~~-~~~~~~~~~~~~~~~ 340 (551)
.+++++++++++|+++.+.+.++.++....+..... .. ++....... ...... ......|+++.....
T Consensus 185 ~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (666)
T PLN02654 185 AQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYP 264 (666)
T ss_pred HHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcCC
Confidence 999999999999999887766665554433322111 01 111111000 000000 011233555543221
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH-HHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHH
Q 008848 341 YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (551)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (551)
. ..+.....++|++||+|||||||+||||+++|++++. ........++++++|++++.++++|.++. +.++.+
T Consensus 265 ~-----~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 339 (666)
T PLN02654 265 T-----KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGP 339 (666)
T ss_pred C-----CCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHH
Confidence 1 1122335679999999999999999999999999764 33445556889999999999999999986 457899
Q ss_pred HHhCCEEEEecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHH
Q 008848 419 FLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (551)
Q Consensus 419 l~~G~~lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~ 493 (551)
|+.|++++++++. +++..++++|++++||++.++|++++.|.+... ....++++||.++++||+++++.++++.+
T Consensus 340 L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~ 419 (666)
T PLN02654 340 MLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFN 419 (666)
T ss_pred HHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHH
Confidence 9999999999753 468899999999999999999999999987643 23467899999999999999999999998
Q ss_pred hccC--CceeccccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 494 KAWY--NAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 494 ~~~~--~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.++. +++.+.||+||+++..+...+. .+..++++|+|++|++++|+|++|+++|.|.
T Consensus 420 ~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~ 479 (666)
T PLN02654 420 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGEC 479 (666)
T ss_pred HhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCC
Confidence 8864 6899999999998654443321 2456789999999999999999999998764
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-54 Score=471.90 Aligned_cols=420 Identities=26% Similarity=0.412 Sum_probs=334.7
Q ss_pred ccchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEE
Q 008848 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVW 197 (551)
Q Consensus 118 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~ 197 (551)
+.+|+.++++++++++.||..+++. .+.|.+++.++++.. .....+||.++.+|.+++++++++ +++|+++|+++
T Consensus 4 ~~~y~~~~~~s~~~~~~fw~~~~~~-~~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~ 78 (625)
T TIGR02188 4 LEQYKELYEESIEDPDKFWAKLARE-LLDWFKPFTKVLDWS--FPPFYKWFVGGELNVSYNCVDRHL--EARPDKVAIIW 78 (625)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHh-cCceecCCceeecCC--CCCCCeeCCCCEEEHHHHHHHHhh--ccCCCCeEEEE
Confidence 3568999999999999999999988 467889998887643 234679999999999999998754 67999999998
Q ss_pred ecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHH
Q 008848 198 REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRL 276 (551)
Q Consensus 198 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l 276 (551)
.++ ..+..+++||+||+++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++
T Consensus 79 ~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l 156 (625)
T TIGR02188 79 EGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRI 156 (625)
T ss_pred EcC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHH
Confidence 653 124467899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEEeecceeccCccccchhHHhh---cCC---CceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCC
Q 008848 277 RVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP---LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (551)
Q Consensus 277 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~---~~~---~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (551)
++++++++|+++...+.++..+....+.+ ..+ ..++++........ ........|+++...... ....
T Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~ 230 (625)
T TIGR02188 157 NDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP-WVEGRDVWWHDLMAKASA-----YCEP 230 (625)
T ss_pred HhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-ccccccccHHHHHhhcCC-----CCCc
Confidence 99999999999887666665544443322 222 12333322211100 001123446666543221 1223
Q ss_pred CCCCCCCeEEEEecCCCCCCCceEEecchhhHHHH-HHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEEe
Q 008848 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT-AEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (551)
Q Consensus 351 ~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~ 428 (551)
....+++++||+|||||||+||||+++|++++... ......++++++|++++.++++|..+. +.++.+|+.|++++++
T Consensus 231 ~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~ 310 (625)
T TIGR02188 231 EPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMF 310 (625)
T ss_pred eecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEE
Confidence 34567899999999999999999999999976543 334445788999999999999999886 5688999999999998
Q ss_pred cCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhcc--CCcee
Q 008848 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (551)
Q Consensus 429 ~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (551)
++. +++..+++.|++++||++.++|++++.|.+... ....++++||.+++|||++++++++++.+.++ +++++
T Consensus 311 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~ 390 (625)
T TIGR02188 311 EGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIV 390 (625)
T ss_pred CCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceE
Confidence 743 368899999999999999999999999987542 23456899999999999999999999988876 37899
Q ss_pred ccccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccC-CCC
Q 008848 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYV-RTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp-~Gv 550 (551)
|.||+||+++.++...+. .+.+++++|+|++|++++|+|++|+++| +|.
T Consensus 391 ~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~ 441 (625)
T TIGR02188 391 DTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGE 441 (625)
T ss_pred ecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCC
Confidence 999999998654433221 2456788999999999999999999998 663
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=466.14 Aligned_cols=418 Identities=20% Similarity=0.312 Sum_probs=329.8
Q ss_pred cchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEEe
Q 008848 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (551)
Q Consensus 119 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~ 198 (551)
.+|+.++++++++++.||..+++. +.|++++.++++.. ..+..+||.++.+|.++++++++. +.+|+++|+++.
T Consensus 2 ~~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~A~~~~ 75 (629)
T PRK10524 2 MSYSEFYQRSIDDPEAFWAEQARR--IDWQTPFTQVLDYS--NPPFARWFVGGRTNLCHNAVDRHL--AKRPEQLALIAV 75 (629)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHh--CCcccCchhhccCC--CCCcCccCCCcEeeHHHHHHHHhh--ccCCCCeEEEEE
Confidence 468999999999999999999996 57999999988542 234578999999999999998754 678999999985
Q ss_pred cCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 008848 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (551)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~ 277 (551)
+. ..+..+++||+||+++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 76 ~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~ 153 (629)
T PRK10524 76 ST--ETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARID 153 (629)
T ss_pred cC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHH
Confidence 42 123456899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeecceeccCccccchhHHhh---cC---CCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCC
Q 008848 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AA---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351 (551)
Q Consensus 278 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~---~~---~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (551)
+++++++|+++...+.++.++....+.+ .. ...++++....... .........|.++...... ...+..
T Consensus 154 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~ 228 (629)
T PRK10524 154 DAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM-ARVAGRDVDYATLRAQHLG----ARVPVE 228 (629)
T ss_pred hcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCCcccHHHHHhcCCC----CCCCce
Confidence 9999999998876666665544433322 11 12333333211100 0011123456665433221 111122
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEecchhhHHHH-HHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEEec
Q 008848 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT-AEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (551)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~~ 429 (551)
...+++++||+|||||||.||||+++|++++... ......++++++|++++.++++|+++. +.++.+|+.|+++++++
T Consensus 229 ~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~ 308 (629)
T PRK10524 229 WLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYE 308 (629)
T ss_pred eeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEEC
Confidence 3456899999999999999999999999975433 334445788999999999999999886 56889999999999987
Q ss_pred CC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 430 GS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 430 ~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+. +++..++++|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ ++++|.|
T Consensus 309 g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~~Y 387 (629)
T PRK10524 309 GLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALG-VPVIDNY 387 (629)
T ss_pred CCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcC-CCeEecc
Confidence 53 467889999999999999999999999887542 23456899999999999999999999988775 7899999
Q ss_pred cccccccccccCCc---CCCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 505 GGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 505 G~TE~~~~~~~~~~---~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
|+||++..++.... ..+...+++|+|++|++++|+|+ +|+++|+|.
T Consensus 388 G~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~ 437 (629)
T PRK10524 388 WQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNE 437 (629)
T ss_pred ccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCC
Confidence 99999743322221 12345678999999999999998 999999885
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=466.38 Aligned_cols=445 Identities=27% Similarity=0.405 Sum_probs=346.1
Q ss_pred ccccCCcchhccccHHHHHHHhCCccccccCCCCccchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCC
Q 008848 84 LYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH 163 (551)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 163 (551)
..|.|+......++|..+....... |+..+.+|+.++++++++++.||..+++...+.|..++.++++.. ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~--~~~ 76 (655)
T PRK03584 4 PLWTPSAERIAASRMTAFIRWLAAR-----RGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGR--RMP 76 (655)
T ss_pred CCCCCChhhcccchHHHHHHHHHHH-----hCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcEeecCC--CCC
Confidence 3677766656677776654433211 333346789999999999999999999987778988888886542 234
Q ss_pred CCCcCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC
Q 008848 164 GGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (551)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~ 242 (551)
..+||.++.+|++++++++ .+|+++|+++.+. .+..+++||+||+++++++|++|++. +++||+|+|+++|
T Consensus 77 ~~~wf~~~~~n~~~~~~~~-----~~~~~~Al~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n 148 (655)
T PRK03584 77 GARWFPGARLNYAENLLRH-----RRDDRPAIIFRGE---DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPN 148 (655)
T ss_pred CCeeCCCCEeeHHHHhhcc-----CCCCCeEEEEECC---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 5799999999999999862 4689999998754 24567899999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhh---cCCC--ceEEecCC
Q 008848 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAPL--KAIVLPAI 317 (551)
Q Consensus 243 ~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~---~~~~--~~~vv~~~ 317 (551)
++++++++|||+++|++++|++|.++.+++.+++++++++++|+++.+.+.++.++....+.+ ..+. .++++...
T Consensus 149 ~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 228 (655)
T PRK03584 149 IPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYL 228 (655)
T ss_pred CHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecC
Confidence 999999999999999999999999999999999999999999999877655555544443322 2222 23333322
Q ss_pred CCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH-HHHHHhhhhcCCCC
Q 008848 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLKV 396 (551)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~ 396 (551)
..............|+++...... .........+++++||+|||||||.||||+++|++++ +.+......+++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 304 (655)
T PRK03584 229 GPAAAAAALPGALLWEDFLAPAEA----AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGP 304 (655)
T ss_pred CCcccccccCCcccHHHHhhcccc----CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCC
Confidence 110011112234567776652211 1122234567899999999999999999999999875 44555556788999
Q ss_pred CCEEEEecCcccchhhHHHHHHHHhCCEEEEecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCC
Q 008848 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWT 471 (551)
Q Consensus 397 ~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~ 471 (551)
+|++++.++++|+++.+ ++.+|+.|++++++++. +++..++++|++++||++.++|++++.|.+... ....+++
T Consensus 305 ~d~~~~~~~~~~~~~~~-~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~ 383 (655)
T PRK03584 305 GDRFFWYTTCGWMMWNW-LVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLS 383 (655)
T ss_pred CCEEEEcCCchHHhHHH-HHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChh
Confidence 99999999999986543 66899999999998753 478899999999999999999999999876532 2346789
Q ss_pred CccEEEeecCCCChhhHHHHHHhcc-CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCC
Q 008848 472 KIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRT 549 (551)
Q Consensus 472 sLr~i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~G 549 (551)
+||.+++|||++++++.+++.+.++ +.++++.||+||++..+....+..+...+++|+|++|++++|+|++|+++ +|
T Consensus 384 sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g 461 (655)
T PRK03584 384 ALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VG 461 (655)
T ss_pred heEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-CC
Confidence 9999999999999999999988874 57899999999986544433333445678899999999999999999988 45
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=461.55 Aligned_cols=417 Identities=28% Similarity=0.406 Sum_probs=328.8
Q ss_pred cchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEEe
Q 008848 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (551)
Q Consensus 119 ~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~ 198 (551)
.+|..+.++++++++.||..+.+. +.|..++.++++. ......|+.++.+|.++++++++. +++|+++|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~---~~~~~~w~~~~~~n~~~~~l~~~~--~~~p~~~Al~~~ 89 (637)
T PRK00174 17 EQYKALYQESVEDPEGFWAEQAKR--LDWFKPFDTVLDW---NAPFIKWFEDGELNVSYNCLDRHL--KTRGDKVAIIWE 89 (637)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh--cCeecCCcccccC---CCCCCccCCCCEeEHHHHHHHHhh--ccCCCCeEEEEE
Confidence 467888999999999999999887 4677888888764 345689999999999999998754 678999999986
Q ss_pred cCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 008848 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (551)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~ 277 (551)
+. ..+..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 90 ~~--~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~ 167 (637)
T PRK00174 90 GD--DPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRII 167 (637)
T ss_pred CC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHH
Confidence 53 123456899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeecceeccCccccchhHHhh---cCCC--ceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCC
Q 008848 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (551)
Q Consensus 278 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~---~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (551)
+++++++|+++...+.++..+....+.+ ..+. .++++........ ........|+++...... ......
T Consensus 168 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~ 241 (637)
T PRK00174 168 DAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD-WVEGRDLWWHELVAGASD-----ECEPEP 241 (637)
T ss_pred hcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC-cCCCCcccHHHHHhhcCC-----CCCccc
Confidence 9999999998876555544444333322 1221 2223322111100 001123446666543221 122234
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecchhhHHHHH-HhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEEecC
Q 008848 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQG 430 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~~~ 430 (551)
..+++++||+|||||||+||||+++|++++.... .....++++++|++++.++++|..+. +.++.+|+.|++++++++
T Consensus 242 ~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 321 (637)
T PRK00174 242 MDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEG 321 (637)
T ss_pred cCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECC
Confidence 5678999999999999999999999999865443 34445788899999999999999886 568899999999999864
Q ss_pred C---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc--CCCCCCCccEEEeecCCCChhhHHHHHHhccC--Cceecc
Q 008848 431 S---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NAIIES 503 (551)
Q Consensus 431 ~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~--~~l~n~ 503 (551)
. +++..+++.|++++||++.++|++++.|++.... ...++++||.+++|||++++++.+++.+.++. ++++|.
T Consensus 322 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~ 401 (637)
T PRK00174 322 VPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDT 401 (637)
T ss_pred CCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEec
Confidence 2 3688999999999999999999999999875432 23568899999999999999999998887753 689999
Q ss_pred ccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||+||++..++...+. .....+++|+|++|++++|+|++|+++|+|.
T Consensus 402 YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~ 449 (637)
T PRK00174 402 WWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGE 449 (637)
T ss_pred ccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCC
Confidence 9999998654432221 2335678999999999999999999999885
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=459.88 Aligned_cols=443 Identities=25% Similarity=0.373 Sum_probs=342.3
Q ss_pred ccccCCcchhccccHHHHHHHhCCccccccCCCCccchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCC
Q 008848 84 LYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH 163 (551)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 163 (551)
..|.|.......+++..+.+..... |...+.+|+.++++++++++.||..+++...+.|..++.++++.. ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~--~~~ 77 (652)
T TIGR01217 5 PLWQPDAQRIAQARMTRFQAWAGEH-----HGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDR--TMP 77 (652)
T ss_pred CCCCCChhhcccchHHHHHHHHHHh-----hCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCceeeeCC--CCC
Confidence 4777776656667766554443321 333446789999999999999999999998889999999998652 234
Q ss_pred CCCcCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC
Q 008848 164 GGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (551)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~ 242 (551)
...|+.++.+|+++++++. .++++|+++.+. .+..+++||+||.++++++|++|++. +++||+|+|+++|
T Consensus 78 ~~~wf~~~~~n~~~~~~~~------~~~~~a~~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n 148 (652)
T TIGR01217 78 GAQWFPGARLNYAENLLRA------AGTEPALLYVDE---THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148 (652)
T ss_pred CCEECCCCeeeHHHHHhcc------CCCCeEEEEECC---CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 5789999999999999862 368999998754 24567899999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhh---cCCC--ceEEecCC
Q 008848 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAPL--KAIVLPAI 317 (551)
Q Consensus 243 ~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~---~~~~--~~~vv~~~ 317 (551)
++++++++|||+++|++++|++|.++++++.+++++++++++|+++.+.+.++..+....+.+ ..+. .++++...
T Consensus 149 ~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~ 228 (652)
T TIGR01217 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYL 228 (652)
T ss_pred CHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCC
Confidence 999999999999999999999999999999999999999999999887766666555444433 2221 23333321
Q ss_pred CCCC-CCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH-HHHHHhhhhcCCC
Q 008848 318 GNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLK 395 (551)
Q Consensus 318 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~ 395 (551)
.... ..........|+++...... .........++++++|+|||||||.||||+++|++++ +........++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 304 (652)
T TIGR01217 229 GPRETEAPKIDGALDLEDFTAAAQA----AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLG 304 (652)
T ss_pred CCcccccccccCcccHHHHHhcccC----CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCC
Confidence 1100 00001134457776543211 0111223456899999999999999999999999965 3444455567899
Q ss_pred CCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCC
Q 008848 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDW 470 (551)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l 470 (551)
++|+++++++++|+++.+ ++.+|+.|++++++++. +++..++++|++++||++.++|++++.+..... ....++
T Consensus 305 ~~d~~~~~~~~~~~~~~~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l 383 (652)
T TIGR01217 305 PGDRLFYYTTTGWMMWNW-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDL 383 (652)
T ss_pred CCcEEEEeCCcchhhhHH-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCCh
Confidence 999999999999986544 56899999999998753 367789999999999999999998888765421 234678
Q ss_pred CCccEEEeecCCCChhhHHHHHHhcc-CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccC
Q 008848 471 TKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYV 547 (551)
Q Consensus 471 ~sLr~i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp 547 (551)
++||.+++|||++++++.+++.+.++ ...+.+.||+||++.++....+..+...+++|+|.+|++++|+|++|++++
T Consensus 384 ~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~~ 461 (652)
T TIGR01217 384 SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVT 461 (652)
T ss_pred hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCCC
Confidence 99999999999999999999888765 346789999999764443333334455688999999999999999999884
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=402.45 Aligned_cols=426 Identities=32% Similarity=0.439 Sum_probs=348.6
Q ss_pred CCCCccchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCCCCCcCCCCcchhhhhhccccccCCCCCCce
Q 008848 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (551)
Q Consensus 114 y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~ 193 (551)
|...+.+|..|+++++++++.||..+++++....... ..............|+.+...|++++|++++.... .++++
T Consensus 6 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~-~~~~~ 82 (626)
T KOG1175|consen 6 YKNSLSSYREFYRFSVEDPERFWGEVAKELHWKFPWP--RCNKDENKGNPFTKWFPGAFLNACYNCLDRHIKEK-GGDKV 82 (626)
T ss_pred cCCCHHHHHHHHhhcccCHHHHHHHhhhhhhcccCcc--ccccccccCCCCccccccchhhhhHhhhhhhhhhc-CCCCc
Confidence 5566778999999999999999999999965332222 22222223456779999999999999999876445 79999
Q ss_pred EEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHH
Q 008848 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (551)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l 272 (551)
|+++.+.+ .+....+||.||.+++.++|..|++. +++||+|+++||+.+++++++|||.++|++.+++...+++.++
T Consensus 83 a~~~~~~~--~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l 160 (626)
T KOG1175|consen 83 AIIFEGNE--GGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKEL 160 (626)
T ss_pred EEEEEecC--CCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHH
Confidence 99998652 23344599999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCC
Q 008848 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (551)
Q Consensus 273 ~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (551)
...++++++++|++.+...+.++.++....+.+................-......+..|+++...... ..++..
T Consensus 161 ~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~-----~~~~~~ 235 (626)
T KOG1175|consen 161 LDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASP-----EHPCVP 235 (626)
T ss_pred HHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCC-----CCCcee
Confidence 999999999999999999999998888777665433211110000000000011135567776555543 233567
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecchhh-HHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HHHHHHhCCEEEEecC
Q 008848 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG 430 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~~lvl~~~ 430 (551)
.+.+|+.+|+|||||||.|||+.+++.+. +..+......++++++|++++.+.++|+++.+. .+++|++|++++++++
T Consensus 236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g 315 (626)
T KOG1175|consen 236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEG 315 (626)
T ss_pred cCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcC
Confidence 77899999999999999999999998774 555666667899999999999999999999865 6779999999999987
Q ss_pred CC-ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecccccc
Q 008848 431 SP-LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (551)
Q Consensus 431 ~~-~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (551)
.+ ++..+++.+.+++||++++.|++++.|.+... ...+++++||.+.++||++.++.++|+.+.++..+|++.||+|
T Consensus 316 ~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt 395 (626)
T KOG1175|consen 316 PPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT 395 (626)
T ss_pred CCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence 66 88999999999999999999999998776543 2344457899999999999999999999998744799999999
Q ss_pred ccccccccCCcCC-CCCcCccCCCCCCceEEEECCCCCccCCC
Q 008848 508 ELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYVRT 549 (551)
Q Consensus 508 E~~~~~~~~~~~~-~~~~~~iG~p~~g~~v~IlD~~g~~vp~G 549 (551)
|++..++.+.+.. +.+++++|+|.+|+.+.|+|++|+++|++
T Consensus 396 EtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~ 438 (626)
T KOG1175|consen 396 ETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPS 438 (626)
T ss_pred ccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCC
Confidence 9998888877766 88999999999999999999999999884
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-50 Score=440.59 Aligned_cols=480 Identities=19% Similarity=0.183 Sum_probs=370.7
Q ss_pred HHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCCC----c---
Q 008848 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPP----L--- 84 (551)
Q Consensus 13 ~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~~----~--- 84 (551)
..++++...+..+|.++++++++....+ +||++||++ +++.+.+.|..+ +|+ |+++|++++...... .
T Consensus 67 ~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~h~~~p~~~-l~~~~~~~~~~~-~~l--~~~~~~~~~~~~~~~~~~~~~~~ 142 (642)
T COG1020 67 TLPLRLDISGRVTFAELLARLRELALGALEHQDLPGEQ-LVERLGRERSLS-EPL--FDVVFVLQNGPTAGLKLPGLRVE 142 (642)
T ss_pred eeeeeeccCCCCCHHHHHHHHHHHHHHHhhccCCCHHH-HHHHHhhhccCC-CCc--eeeEEEecCcccccccccccccc
Confidence 4567888888899999999999998887 999999999 999999999888 889 999999988654321 1
Q ss_pred cccCCcchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeeccccc--cccCCCCC
Q 008848 85 YWFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKC--ILDRTDKS 161 (551)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~--~l~~~~~~ 161 (551)
.+... ....++|+.+...+. ++...+ |.. ++|++.+++++..+|..++..+..++...... .+...++
T Consensus 143 ~~~~~-~~~~~~d~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ll~~~e~- 213 (642)
T COG1020 143 ELGIE-TPAAKLDLALAVVEG--GLRLSFDYAR-----ELFDAETIERELRHFLQLLAALADAPRTSLSALPLLLPSER- 213 (642)
T ss_pred ccccc-CcccccceEEEEEeC--ceEEEEEeec-----ccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCCHHHH-
Confidence 11111 345567777666555 666777 888 99999999999999999999987555522222 1222222
Q ss_pred CCCCCcCCCCcchhh-hhhcc--ccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEE
Q 008848 162 KHGGTWLPGSVLNIA-ECCLL--PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237 (551)
Q Consensus 162 ~~~~~~~~~~~~~~~-~~~~~--~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~ 237 (551)
..|+ ....... ..+++ ...++.+.|+++|+.+.+. .+||+||+.+++++|+.|++. ++++++|+
T Consensus 214 ---~~~~-~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~--------~lty~el~~~a~~la~~l~~~g~~~~~~V~ 281 (642)
T COG1020 214 ---EVWN-ALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQ--------QLTYAELDARANRLARLLISLGVGPGETVA 281 (642)
T ss_pred ---hhcc-ccccCCCccchHHHHHHHHHHhCCCceeEecCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCeEE
Confidence 2355 3222221 11222 2346789999999998766 899999999999999999999 99999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCC
Q 008848 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI 317 (551)
Q Consensus 238 i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 317 (551)
++++++++++++++|++|+|++|+|+||.+|.+|+.++++++++++++++..........+.
T Consensus 282 i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------ 343 (642)
T COG1020 282 ILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG------------------ 343 (642)
T ss_pred EEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc------------------
Confidence 99999999999999999999999999999999999999999999999998542110000000
Q ss_pred CCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCC
Q 008848 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (551)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (551)
...+........ .. .......+++++|++|||||||+||||+++|+++.+.+.+....+.++.+
T Consensus 344 ------------~~~~~~~~~~~~---~~-~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~ 407 (642)
T COG1020 344 ------------LALDDALSEIPD---TD-PIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDAD 407 (642)
T ss_pred ------------cccccccccCCc---cC-cccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcc
Confidence 000000000000 00 00123355899999999999999999999999999988888888999999
Q ss_pred CEEEEecCcccchhhHHHHHHHHhCCEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccC--CCCCCCc
Q 008848 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKI 473 (551)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~sL 473 (551)
|+++..++++||.+.+++|.+++.|+++++.+.. .++..+.+.+.++++|++..+|+++..+....... ....+.+
T Consensus 408 d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~l 487 (642)
T COG1020 408 DRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERL 487 (642)
T ss_pred cEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccc
Confidence 9999999999999999999999999999998743 37888999999999999999999999998762221 1223359
Q ss_pred cEEEeecCCCChhhHHHHHHhcc-CCceeccccccccccccccCCcCCCCC-cCccCCCCCCceEEEECCCCCccCCCCC
Q 008848 474 RSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQA-FGAFSTATMTAGLVILDECGVPYVRTFS 551 (551)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~-~~~iG~p~~g~~v~IlD~~g~~vp~Gv~ 551 (551)
|.+++|||+++..+...+..... ...+.|.||+||+++.+.......... ..+||+|++|++++|+|+.++++|.||+
T Consensus 488 r~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~ 567 (642)
T COG1020 488 RQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVP 567 (642)
T ss_pred cEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCC
Confidence 99999999999999887766544 367999999999776544333221111 4699999999999999999999999974
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=409.48 Aligned_cols=341 Identities=19% Similarity=0.172 Sum_probs=275.7
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 58 ~a~~~pd~~Al~~~~~--------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l 129 (549)
T PRK07788 58 AARRAPDRAALIDERG--------TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILL 129 (549)
T ss_pred HHHHCCCceEEEECCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 4588999999998766 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
++.++.+++.+++++++++++|+++.+.. ....+.........++...... .....+...++++......
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 199 (549)
T PRK07788 130 NTGFSGPQLAEVAAREGVKALVYDDEFTD------LLSALPPDLGRLRAWGGNPDDD--EPSGSTDETLDDLIAGSST-- 199 (549)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhHH------HHHhhccccccceEEEEecCcc--ccCCcCcccHHHHhcCCCC--
Confidence 99999999999999999999999875321 1111111111111111111100 0111244567776654321
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
...+...++.++|+|||||||.||||+++|+++.+.+......+++.++++++...|++|..++..++.++..|+
T Consensus 200 -----~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~ 274 (549)
T PRK07788 200 -----APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGS 274 (549)
T ss_pred -----CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCC
Confidence 111234577899999999999999999999999988777777788999999999999999999877888999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc--CCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
++++.. .+++..+++.+++++||++.++|++++.|++.... ...++++||.+++|||++++++.+++.+.++ .+++
T Consensus 275 ~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~ 352 (549)
T PRK07788 275 TVVLRR-RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLY 352 (549)
T ss_pred EEEECC-CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhC-ccce
Confidence 999874 57889999999999999999999999999876543 4556889999999999999999999988876 6899
Q ss_pred ccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||++..++..........+++|+|++|++++|+|++|+++|+|.
T Consensus 353 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~ 401 (549)
T PRK07788 353 NLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGV 401 (549)
T ss_pred eccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCC
Confidence 9999999876443322222345678999999999999999999999885
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=402.62 Aligned_cols=361 Identities=22% Similarity=0.280 Sum_probs=289.9
Q ss_pred CcCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 008848 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (551)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~ 244 (551)
.|+.+...|..+.++++++ +..+|+++|+++.+. ...+++||+||.++++++|++|.+. +++||+|+++++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~----~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~ 109 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHA-DGGRKDKVALRYLDA----SRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIP 109 (570)
T ss_pred ccCCCCceeHHHHHHHHhh-ccCCCCceEEEEECC----CCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence 6777888899888887654 235799999998653 1235899999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCC
Q 008848 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG 322 (551)
Q Consensus 245 e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~ 322 (551)
++++++|||+++|++++|+++.++++++.+++++++++++|+++........ ...+. .++++.....
T Consensus 110 ~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--- 178 (570)
T PRK04319 110 ELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--------DDLPSLKHVLLVGEDVE--- 178 (570)
T ss_pred HHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--------hcCCCceEEEEECCCcC---
Confidence 9999999999999999999999999999999999999999998764321100 01111 1222221110
Q ss_pred CCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEE
Q 008848 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402 (551)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~ 402 (551)
...+..++.++...... ........++++++|+|||||||.||||+++|+++++.+......++++++|++++
T Consensus 179 --~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~ 251 (570)
T PRK04319 179 --EGPGTLDFNALMEQASD-----EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWC 251 (570)
T ss_pred --CCcCccCHHHHHhhcCC-----cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEe
Confidence 11233456665543321 11223345689999999999999999999999999888777777788999999999
Q ss_pred ecCcccchhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEee
Q 008848 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAST 479 (551)
Q Consensus 403 ~~~~~~~~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~g 479 (551)
..+++|..+. +.++.+++.|+++++.+..+++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|
T Consensus 252 ~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 331 (570)
T PRK04319 252 TADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSV 331 (570)
T ss_pred cCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEc
Confidence 9999998876 5688999999999998777889999999999999999999999999986532 234568899999999
Q ss_pred cCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|+++++++.+++++.++ .++++.||+||++..++.........++++|+|++|++++|+|++|+++|+|.
T Consensus 332 G~~l~~~~~~~~~~~~g-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~ 401 (570)
T PRK04319 332 GEPLNPEVVRWGMKVFG-LPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNR 401 (570)
T ss_pred ccCCCHHHHHHHHHHhC-CCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCC
Confidence 99999999999888775 78999999999986544333323345678999999999999999999998874
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=398.18 Aligned_cols=341 Identities=23% Similarity=0.233 Sum_probs=272.4
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++.+|+++|+++.+.. .++||+||+++++++|++|++. |++||+|+|+++|++++++++|||+++|++++|+
T Consensus 20 ~a~~~~~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpl 93 (534)
T COG0318 20 AARRNPDRPALIFLGRG------GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPL 93 (534)
T ss_pred HHHhCCCceEEEEcCCC------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeec
Confidence 34789999999998771 0499999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCC-cchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD-LSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 342 (551)
+|.+..+++.+++++++++++++++.+. +....+....+....+....... ... ..++++......
T Consensus 94 n~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~- 160 (534)
T COG0318 94 NPRLTPRELAYILNDAGAKVLITSAEFA------ALLEAVAEALPVVLVVLLVGDAD------DRLPITLEALAAEGPG- 160 (534)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEcccch------hHHHHHhccCCcceEEEeccccc------ccccccHHHHhhccCC-
Confidence 9999999999999999999999997521 12222222222111222111110 000 245555333221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC--CCCCCEEEEecCcccchhhHH-HHHHH
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPVI-LFSSF 419 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~~-~~~~l 419 (551)
.........++|+|+|+|||||||.||||++||+|++.+.......+. +++.|++++++|++|++|+.. ++.++
T Consensus 161 ---~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~ 237 (534)
T COG0318 161 ---PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPL 237 (534)
T ss_pred ---cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHH
Confidence 111112257899999999999999999999999999988887777777 899999999999999999975 44559
Q ss_pred HhCCEEEEecC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCC-ccEEEeecCCCChhhHHHHHHhccC
Q 008848 420 LNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWY 497 (551)
Q Consensus 420 ~~G~~lvl~~~-~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~s-Lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (551)
+.|+++++.++ .+++..++..+.++++|++.++|+++..|++.......++++ ||.+++||++++++++++++++++.
T Consensus 238 ~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~ 317 (534)
T COG0318 238 LGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGP 317 (534)
T ss_pred HcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCC
Confidence 99999999774 578899999999999999999999999999887666555665 9999999999999999999999875
Q ss_pred CceeccccccccccccccCCcCC-CCCcCccCCCCCCceEEEECCCCC-ccC
Q 008848 498 NAIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGV-PYV 547 (551)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~g~~v~IlD~~g~-~vp 547 (551)
.+++++||+||++..++...... ....+++|+|+||++++|+|++++ ++|
T Consensus 318 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p 369 (534)
T COG0318 318 IAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP 369 (534)
T ss_pred CceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC
Confidence 68999999999986555544433 235678899999999999997664 666
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=401.97 Aligned_cols=342 Identities=18% Similarity=0.180 Sum_probs=266.5
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
.++++|+++|+.+.+. +++||+||.++++++|++|.+ .+||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 ~~~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~lA~~L~~--~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~ 98 (539)
T PRK06334 28 LCSEMTTATVCWDEQL-------GKLSYNQVRKAVIALATKVSK--YPDQHIGIMMPASAGAYIAYFATLLSGKIPVMIN 98 (539)
T ss_pred HHHhCCCceEEEeCCC-------CcccHHHHHHHHHHHHHHHhh--ccCCeEEEEcCCchHHHHHHHHHHhcCCeeEecC
Confidence 4578999999987653 289999999999999999987 4999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc---CCCceEEecCCCCCCCCCCCCCCcchHHhhccC--
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV-- 339 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~-- 339 (551)
|.++.+++.++|++++++++++++++.. .+..+... .+..++.+.... ....+.+.....
T Consensus 99 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~ 163 (539)
T PRK06334 99 WSQGLREVTACANLVGVTHVLTSKQLMQ------HLAQTHGEDAEYPFSLIYMEEVR---------KELSFWEKCRIGIY 163 (539)
T ss_pred cccchHHHHHHHHHcCCCEEEehHHHHH------HHhhhhhccccccccEEEEehhh---------hhccHHHhhhhhhh
Confidence 9999999999999999999999875321 11111110 111222221100 000111110000
Q ss_pred ---CCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH-HH
Q 008848 340 ---DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-IL 415 (551)
Q Consensus 340 ---~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~ 415 (551)
...............++++++|+|||||||.||||+++|+++.+...+....++++++|+++++.|++|.+++. .+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 243 (539)
T PRK06334 164 MSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCT 243 (539)
T ss_pred hcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHH
Confidence 00000000111234678999999999999999999999999988877777778889999999999999988874 47
Q ss_pred HHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhc
Q 008848 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (551)
Q Consensus 416 ~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 495 (551)
+.++..|+++++....+++..+++.|+++++|++.++|++++.|++.......++++||.+++||+++++++.+++.+.+
T Consensus 244 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 323 (539)
T PRK06334 244 LFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTF 323 (539)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHC
Confidence 88999999999876556889999999999999999999999999876544456689999999999999999999999888
Q ss_pred cCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
++++++|.||+||++..++..........+++|+|++|++++|+|+ +++++|+|.
T Consensus 324 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~ 379 (539)
T PRK06334 324 PHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGE 379 (539)
T ss_pred CCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCc
Confidence 7789999999999986544433333334568999999999999995 588999885
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=406.54 Aligned_cols=350 Identities=16% Similarity=0.151 Sum_probs=257.1
Q ss_pred cCCCCCCceEEEEecC-CCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
+++++||++|+.+.+. .+..+.++.+||+||+++++++|++|+++ +++||+|+|+++|++||++++|||+++|+++||
T Consensus 54 ~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vp 133 (666)
T PLN02614 54 SVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVP 133 (666)
T ss_pred HHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEE
Confidence 3478999999986421 00113455799999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC-----C-ceEEecCCCCCCC---CCCCCCCcchH
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-----L-KAIVLPAIGNDVG---IPLREQDLSWK 333 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~vv~~~~~~~~---~~~~~~~~~~~ 333 (551)
+++.++.+++.+++++++++++|+++.. ...+....+ . .++++........ ........+++
T Consensus 134 l~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 204 (666)
T PLN02614 134 LYDTLGAGAVEFIISHSEVSIVFVEEKK---------ISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD 204 (666)
T ss_pred ecCCCCHHHHHHHHhccCCCEEEECHHH---------HHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence 9999999999999999999999998642 112211111 1 1222211000000 00000124566
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhc-----CCCCCCEEEEecCccc
Q 008848 334 DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKVGDVYCWPTNLGW 408 (551)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 408 (551)
+++..... .........++|+|+|+|||||||.||||++||+|++..+......+ +++++|++++++|++|
T Consensus 205 ~~~~~~~~----~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H 280 (666)
T PLN02614 205 EFLKLGEG----KQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAH 280 (666)
T ss_pred HHHhhccc----CCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHH
Confidence 66543321 01111224578999999999999999999999999988766544332 5788999999999999
Q ss_pred chhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc-----------------------
Q 008848 409 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----------------------- 465 (551)
Q Consensus 409 ~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~----------------------- 465 (551)
..+....+..++.|+++++.+ .++..+++.|+++++|++.++|++++.|.+....
T Consensus 281 ~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 358 (666)
T PLN02614 281 IFDRVIEECFIQHGAAIGFWR--GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGN 358 (666)
T ss_pred HHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 888755566788999998875 4778999999999999999999999987642100
Q ss_pred --------CCC-------------CC-CCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCC
Q 008848 466 --------EGL-------------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523 (551)
Q Consensus 466 --------~~~-------------~l-~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 523 (551)
... .+ ++||.+++||+++++++ .++...+++++++|+||+||+++.++...+.....
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 437 (666)
T PLN02614 359 MKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDM 437 (666)
T ss_pred HHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccccCCc
Confidence 000 11 68999999999999875 55556665689999999999875433322222235
Q ss_pred cCccCCCCCCceEEEEC-CC--CCccCCCC
Q 008848 524 FGAFSTATMTAGLVILD-EC--GVPYVRTF 550 (551)
Q Consensus 524 ~~~iG~p~~g~~v~IlD-~~--g~~vp~Gv 550 (551)
.+++|+|+||++++|+| ++ ++++|+|.
T Consensus 438 ~gsvG~p~pg~evki~d~~~~~~~~~~~g~ 467 (666)
T PLN02614 438 LGTVGPPVPNVDIRLESVPEMEYDALASTP 467 (666)
T ss_pred CCcccCcCCceEEEEeeecccCcccCCCCC
Confidence 68999999999999998 33 46777764
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=379.35 Aligned_cols=345 Identities=25% Similarity=0.252 Sum_probs=278.6
Q ss_pred CCCc-eEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh---cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 189 EDNT-VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM---FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 189 ~pd~-~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~---v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
.+++ +++++... ..+.+||+|+.+++.|+|.+|.++ +++||+|++++||+++++++++||+.+||++.|++
T Consensus 29 ~~~~~~~~i~~~~-----~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~N 103 (537)
T KOG1176|consen 29 YLDRNTSLVYQDS-----DGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLN 103 (537)
T ss_pred cccCcceEEEecC-----CCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccC
Confidence 3444 77887662 013999999999999999999965 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcc-hHHhhccCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLS-WKDFLSSVDYHP 343 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 343 (551)
|.+.+.++.+.++++++++++++.... +...........+++++................. +.++......
T Consensus 104 p~~~~~ei~~~~~~s~~kiif~d~~~~------~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (537)
T KOG1176|consen 104 PRLTASEIAKQLKDSKPKLIFVDEDFY------DKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP-- 175 (537)
T ss_pred cccCHHHHHHHHHhcCCeEEEEcCchH------HHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCC--
Confidence 999999999999999999999998643 3333333333445555544311111111111111 3333322211
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
.. ....+.+|++.|+|||||||.||||++||++++...........++..++.++..|++|..|++.++.+++.|+
T Consensus 176 ---~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~ 251 (537)
T KOG1176|consen 176 ---DG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGG 251 (537)
T ss_pred ---cc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCC
Confidence 11 34556799999999999999999999999999888776666677778999999999999999988888777777
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
+.++....+++..+++.|++|+||++.++|+++..|++......++++++|.+.+||+++++++.++++++++...+.++
T Consensus 252 ~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~ 331 (537)
T KOG1176|consen 252 TTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQG 331 (537)
T ss_pred ceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEe
Confidence 77777767899999999999999999999999999999876677899999999999999999999999999997899999
Q ss_pred ccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||+||+++..+.+......+++++|++++|.++.|+++.|+.+|++-
T Consensus 332 YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~ 378 (537)
T KOG1176|consen 332 YGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQ 378 (537)
T ss_pred eccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCC
Confidence 99999996544433322247899999999999999999999999874
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=405.00 Aligned_cols=351 Identities=17% Similarity=0.137 Sum_probs=266.9
Q ss_pred cCCCCCCceEEEEec-CCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWRE-DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
.++++|+++|+.+.. ..+..+.++.+||+||+++++++|++|+++ +++||+|+|+++|++||+++++||+++|++++|
T Consensus 53 ~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vp 132 (651)
T PLN02736 53 AVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVP 132 (651)
T ss_pred HHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEE
Confidence 347899999996421 111123467899999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCC-C-CC--CCCCCCcchHHhhc
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGND-V-GI--PLREQDLSWKDFLS 337 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~-~-~~--~~~~~~~~~~~~~~ 337 (551)
+++.++.+++.+++++++++++|++.... +....+....+. +.+++...... . .. .......+|++++.
T Consensus 133 l~~~~~~~~l~~il~~~~~~~l~~~~~~~------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (651)
T PLN02736 133 LYDTLGPDAVKFIVNHAEVAAIFCVPQTL------NTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLA 206 (651)
T ss_pred eecCCCHHHHHHHHhccCCCEEEECHHHH------HHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHH
Confidence 99999999999999999999999987532 112222222222 22222111000 0 00 00112345676665
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHH
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (551)
.... .........++|+++|+|||||||.||||++||++++..+.+....+++.++|++++++|++|+.+.+.++.
T Consensus 207 ~~~~----~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 282 (651)
T PLN02736 207 QGRS----SPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIV 282 (651)
T ss_pred hccc----CCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHH
Confidence 4321 011122346799999999999999999999999999988887777788999999999999999999888888
Q ss_pred HHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc-----------------------------cCC-
Q 008848 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----------------------------LEG- 467 (551)
Q Consensus 418 ~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~-----------------------------~~~- 467 (551)
+++.|+++++.++ ++..+++.|+++++|++.++|++++.|.+... ...
T Consensus 283 ~l~~G~~i~~~~~--~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (651)
T PLN02736 283 MLHYGVAVGFYQG--DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSP 360 (651)
T ss_pred HHHcCCEEEEeCC--CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999998764 66789999999999999999999988754310 000
Q ss_pred -----------CCC-CCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCce
Q 008848 468 -----------LDW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG 535 (551)
Q Consensus 468 -----------~~l-~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~ 535 (551)
..+ +++|.+++||+++++++.+++...++ ++++|+||+||+++.++.... .....+++|+|+||++
T Consensus 361 ~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~pg~~ 438 (651)
T PLN02736 361 MWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACE 438 (651)
T ss_pred hHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEechHHhchheeccCC-CCCCCCccCCccCceE
Confidence 011 48999999999999999999887775 789999999998765433322 2345689999999999
Q ss_pred EEEECC-------CCCccCCC
Q 008848 536 LVILDE-------CGVPYVRT 549 (551)
Q Consensus 536 v~IlD~-------~g~~vp~G 549 (551)
++|+|. +++++|.|
T Consensus 439 v~i~d~~~~~~~~~~~~~~~G 459 (651)
T PLN02736 439 VKLVDVPEMNYTSEDQPYPRG 459 (651)
T ss_pred EEEEEccccCcccCCCCCCCc
Confidence 999983 34555555
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=392.86 Aligned_cols=336 Identities=14% Similarity=0.071 Sum_probs=269.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|.++ +++||+|+++++|++++++++|||+++|++++|+
T Consensus 52 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 123 (537)
T PRK13382 52 AAQRCPDRPGLIDELG--------TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLL 123 (537)
T ss_pred HHHhCCCCeEEEeCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEec
Confidence 4588999999998665 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++..+. ..........+....++..... .....++++......
T Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-- 188 (537)
T PRK13382 124 NTSFAGPALAEVVTREGVDTVIYDEEFS------ATVDRALADCPQATRIVAWTDE-------DHDLTVEVLIAAHAG-- 188 (537)
T ss_pred CcccCHHHHHHHHHhcCCCEEEEchhhH------HHHHHHHhhccccceEEEecCC-------cccccHHHHhhccCc--
Confidence 9999999999999999999999987532 1111211111111111111000 012234444432211
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
. .....+++.++++|||||||.||||+++|++++.........+.+..+++++...|++|..++..++.++..|+
T Consensus 189 ---~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~ 263 (537)
T PRK13382 189 ---Q--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLAC 263 (537)
T ss_pred ---C--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCc
Confidence 0 11224578999999999999999999999998887777767778889999999999999999878889999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
++++.+ .+++..+++.|+++++|++.++|++++.|++... ....+++++|.+++|||++++++++.+.+.++ .+++
T Consensus 264 ~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~ 341 (537)
T PRK13382 264 TIVTRR-RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIY 341 (537)
T ss_pred EEEECC-CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC-CcEE
Confidence 998864 5788999999999999999999999999987532 12345678999999999999999999988876 6899
Q ss_pred ccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||++..++..........+++|+|++|++++|+|++|+++|.|.
T Consensus 342 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~ 390 (537)
T PRK13382 342 NNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGE 390 (537)
T ss_pred ecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCC
Confidence 9999999986544332222345679999999999999999999999874
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=359.23 Aligned_cols=351 Identities=19% Similarity=0.197 Sum_probs=288.2
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+++.||+.|+++...+ .++||+|+.+.++.+|.+|+++ +++||||+|..||+.+|+..+|||.++|.+.+++|
T Consensus 60 t~~v~dkea~Vf~~eg------~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~N 133 (596)
T KOG1177|consen 60 TERVPDKEAAVFDHEG------IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLN 133 (596)
T ss_pred hhccCcceEEEEeecc------chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccC
Confidence 4778999999987653 3799999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc----------------CCCceEEecCCCCCCCCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA----------------APLKAIVLPAIGNDVGIPLREQ 328 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~vv~~~~~~~~~~~~~~ 328 (551)
|+|+.+++++.|+..+++++++...+.. -.....+.+. ++....++...... .-++
T Consensus 134 P~Yq~~elr~~L~k~~~k~l~~p~~~k~----~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~----~~~G 205 (596)
T KOG1177|consen 134 PAYQSEELRYVLKKVGCKALFAPPQFKT----QNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH----PLPG 205 (596)
T ss_pred cccccHHHHHHHhhcCeEEEEccchhhh----chHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC----cCCC
Confidence 9999999999999999999999876531 1111111111 12223333322111 1236
Q ss_pred CcchHHhhccCCCCCCCC-CCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcc
Q 008848 329 DLSWKDFLSSVDYHPRPN-YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407 (551)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (551)
...++|++........+. ........|||++.|.|||||||.|||+.+||-|++|+......+.++...++++...|++
T Consensus 206 a~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~ 285 (596)
T KOG1177|consen 206 AFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLY 285 (596)
T ss_pred ceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchH
Confidence 667788776654311100 1112356789999999999999999999999999999999888899999988999999999
Q ss_pred cchhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChh
Q 008848 408 WVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (551)
Q Consensus 408 ~~~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~ 486 (551)
|..+. ..++.+|..|+|+|++...+++...++.|.++++|+++++|+|+..|++.......+++++|.++.||+++|++
T Consensus 286 H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~e 365 (596)
T KOG1177|consen 286 HCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPE 365 (596)
T ss_pred HHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHH
Confidence 99995 67889999999999988889999999999999999999999999999998888889999999999999999999
Q ss_pred hHHHHHHhccCCceeccccccccccccccCCcCC--CCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+.+.+.....-..+...||+||++...+.....+ .+...++|+.+++.+..|+|++|.++|.|+
T Consensus 366 Llk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~ 431 (596)
T KOG1177|consen 366 LLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGT 431 (596)
T ss_pred HHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCC
Confidence 9998887654335889999999986544333322 234578999999999999999999999986
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=401.38 Aligned_cols=342 Identities=18% Similarity=0.155 Sum_probs=251.2
Q ss_pred cCCCCCCceEEEEecC-CCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
.++++|+++|+.+... ....+.++++||+||+++++++|++|+++ +++||+|+|+++|++||++++|||+++|+++||
T Consensus 52 ~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vp 131 (660)
T PLN02861 52 AVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVP 131 (660)
T ss_pred HHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEE
Confidence 3578999999976310 00124567899999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC--Cc-eEEecCCCCCCC---CCCCCCCcchHHhh
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LK-AIVLPAIGNDVG---IPLREQDLSWKDFL 336 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~-~~vv~~~~~~~~---~~~~~~~~~~~~~~ 336 (551)
+++.++.+++.++|++++++++|+++... +.........+ .+ ++.+........ ........+|+++.
T Consensus 132 l~~~~~~~~l~~il~~s~~~~v~~~~~~~------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (660)
T PLN02861 132 LYDTLGANAVEFIINHAEVSIAFVQESKI------SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFS 205 (660)
T ss_pred ecCCCCHHHHHHHHHcCCCCEEEECHHHH------HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHH
Confidence 99999999999999999999999976421 11111111111 11 222211100000 00001124566665
Q ss_pred ccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC-----CCCCCEEEEecCcccchh
Q 008848 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-----LKVGDVYCWPTNLGWVMG 411 (551)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-----~~~~d~~l~~~~~~~~~~ 411 (551)
..... ........++|+|+|+|||||||.||||++||++++..+......++ +.++|++++++|++|..+
T Consensus 206 ~~~~~-----~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~ 280 (660)
T PLN02861 206 LMGSL-----DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYD 280 (660)
T ss_pred HhCcc-----cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHH
Confidence 43321 01112345799999999999999999999999999887665544333 468899999999999988
Q ss_pred hHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC----------------------------
Q 008848 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN---------------------------- 463 (551)
Q Consensus 412 ~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~---------------------------- 463 (551)
....+.+++.|+++++.+ .++..+++.|+++++|++.++|++++.|.+..
T Consensus 281 ~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~ 358 (660)
T PLN02861 281 QVIETYCISKGASIGFWQ--GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK 358 (660)
T ss_pred HHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhc
Confidence 755556899999998874 46789999999999999999999999886410
Q ss_pred ---------ccCCC-------CC-CCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCc
Q 008848 464 ---------CLEGL-------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 526 (551)
Q Consensus 464 ---------~~~~~-------~l-~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 526 (551)
..... .+ +++|.+++||+++++++.+ +...++...++|+||+||+++.++..........++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gs 437 (660)
T PLN02861 359 GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGT 437 (660)
T ss_pred CCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCC
Confidence 00000 01 5799999999999999755 555555457999999999876443322222234689
Q ss_pred cCCCCCCceEEEEC
Q 008848 527 FSTATMTAGLVILD 540 (551)
Q Consensus 527 iG~p~~g~~v~IlD 540 (551)
+|+|++|++++|+|
T Consensus 438 vG~p~p~~ev~i~d 451 (660)
T PLN02861 438 VGVPMTTIEARLES 451 (660)
T ss_pred ccCccCceEEEEEE
Confidence 99999999999998
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=393.78 Aligned_cols=358 Identities=20% Similarity=0.148 Sum_probs=270.9
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+++...++.....+++||+||.++++++|++|+++ +++||+|+++++|++++++++|||+++| +++|++
T Consensus 35 a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~ 113 (632)
T PRK07529 35 AARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPIN 113 (632)
T ss_pred HHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCC
Confidence 47899999999753322223446999999999999999999999 9999999999999999999999999999 569999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCce--EEecCCCCCCCC-C---------CCCCCcch
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA--IVLPAIGNDVGI-P---------LREQDLSW 332 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~--~vv~~~~~~~~~-~---------~~~~~~~~ 332 (551)
|.++++++.+++++++++++|+++.+... ...+....+....+... +.+......... . ...+..+|
T Consensus 114 ~~~~~~~i~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (632)
T PRK07529 114 PLLEPEQIAELLRAAGAKVLVTLGPFPGT-DIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDF 192 (632)
T ss_pred CcCCHHHHHHHHHhcCCcEEEEeCCCCCc-hHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccccccCCH
Confidence 99999999999999999999998754210 01111111222222222 222211100000 0 11123456
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh
Q 008848 333 KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP 412 (551)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 412 (551)
.+.+..... ..........++++++|+|||||||.||||+++|+++++........+++++++++++..|++|..+.
T Consensus 193 ~~~~~~~~~---~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 269 (632)
T PRK07529 193 DAELARQPG---DRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNAL 269 (632)
T ss_pred HHHHhcCCC---ccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHH
Confidence 555544322 11111223467899999999999999999999999998887766667788999999999999998886
Q ss_pred H-HHHHHHHhCCEEEEecCC-C-C---hhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChh
Q 008848 413 V-ILFSSFLNGATLALYQGS-P-L---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (551)
Q Consensus 413 ~-~~~~~l~~G~~lvl~~~~-~-~---~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~ 486 (551)
. .++.++..|+++++.+.. + + ...+++.|+++++|++.++|+++..|++... ...++++||.+++||++++++
T Consensus 270 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~~gg~~l~~~ 348 (632)
T PRK07529 270 LVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYALCGAAPLPVE 348 (632)
T ss_pred HHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEEEcCCCCCHH
Confidence 4 578899999999997531 2 2 2578899999999999999999999987642 234689999999999999999
Q ss_pred hHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEE--ECCCC---CccCCCC
Q 008848 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVI--LDECG---VPYVRTF 550 (551)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~I--lD~~g---~~vp~Gv 550 (551)
+.+++++.++ ++++|.||+||++..+...........+++|+|+|+++++| +|++| +++|+|.
T Consensus 349 l~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~ 416 (632)
T PRK07529 349 VFRRFEAATG-VRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDE 416 (632)
T ss_pred HHHHHHHHhC-CcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCC
Confidence 9999988775 89999999999986544433333346789999999999988 47778 8888874
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=385.71 Aligned_cols=350 Identities=18% Similarity=0.173 Sum_probs=272.9
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++.+|+++|+++.+. ..+.++.+||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 34 a~~~p~~~A~~~~~~--~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~ 111 (547)
T PRK13295 34 VASCPDKTAVTAVRL--GTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLM 111 (547)
T ss_pred HHHCCCceEEEecCC--CccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEeccc
Confidence 367899999998652 123446999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
|.++.+++.+++++++++++++++.+.. .+......++....+. .++++... +..++.++.......
T Consensus 112 ~~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 180 (547)
T PRK13295 112 PIFRERELSFMLKHAESKVLVVPKTFRG-FDHAAMARRLRPELPALRHVVVVGGD----------GADSFEALLITPAWE 180 (547)
T ss_pred cccCHHHHHHHHHhcCceEEEEeccccC-cchHHHHHHHhhhCCCcceEEEecCC----------CccCHHHHhhCCccc
Confidence 9999999999999999999999875421 0011111122222221 12222111 122344443221110
Q ss_pred ---CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHH
Q 008848 343 ---PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (551)
Q Consensus 343 ---~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (551)
............++++++|+|||||||.||||+++|++++..+......+++++++++++..|++|..+. +.++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~ 260 (547)
T PRK13295 181 QEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMP 260 (547)
T ss_pred cccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHH
Confidence 0000111223456899999999999999999999999998888777777889999999999999998875 568899
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCC
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (551)
+..|+++++.+ ..++..+++.++++++|++.++|+++..|.........++++||.+++||+++++++.+++++.+ ++
T Consensus 261 l~~G~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~ 338 (547)
T PRK13295 261 VMLGATAVLQD-IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL-GA 338 (547)
T ss_pred HHcCCeEEeCC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-CC
Confidence 99999999876 56889999999999999999999999999876544556788999999999999999999998877 48
Q ss_pred ceeccccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 499 AIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+++|.||+||++..++..... ......++|+|++|++++|+|++++++|.|.
T Consensus 339 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~ 391 (547)
T PRK13295 339 KIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQ 391 (547)
T ss_pred CeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCC
Confidence 999999999997643332211 1223468999999999999999999999874
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=399.23 Aligned_cols=318 Identities=15% Similarity=0.145 Sum_probs=258.4
Q ss_pred CCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCC
Q 008848 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (551)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~ 266 (551)
.+||++|+++ +. .+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++|.
T Consensus 18 ~~pd~~a~~~-~~--------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~ 88 (705)
T PRK06060 18 GWYDRPAFYA-AD--------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPE 88 (705)
T ss_pred cCCCceEEEe-cC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCC
Confidence 3799999986 33 799999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCC
Q 008848 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (551)
Q Consensus 267 ~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (551)
++.+++.+++++++++++|++..... .+.. . .++ ...++...... ..
T Consensus 89 ~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~----~-~~~----------------~~~~~~~~~~~---~~ 135 (705)
T PRK06060 89 LHRDDHALAARNTEPALVVTSDALRD---------RFQP----S-RVA----------------EAAELMSEAAR---VA 135 (705)
T ss_pred CCHHHHHHHHhcCCCcEEEEchHHhh---------hhcc----c-ccc----------------hhhhhhhhccc---cC
Confidence 99999999999999999999875321 0000 0 000 01111111000 00
Q ss_pred CCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh-hhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCE
Q 008848 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (551)
Q Consensus 347 ~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~ 424 (551)
........++++|||+|||||||+||||+++|+++.+.+.+.. ..++++++|++++..+++|+.++ ..++.+|..|++
T Consensus 136 ~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~ 215 (705)
T PRK06060 136 PGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGS 215 (705)
T ss_pred CCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCE
Confidence 0011233568899999999999999999999999988776553 45788899999999999998886 567889999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 425 lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+++.+...++..+...++++++|+++++|+++..+++... ..++++||.+++|||++++++.+++.+.+++++++|.|
T Consensus 216 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~Y 293 (705)
T PRK06060 216 AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI 293 (705)
T ss_pred EEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeee
Confidence 9998755677888999999999999999999999886532 33578999999999999999999998888778999999
Q ss_pred cccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|+||++..+... .......+++|+|++|++++|+|++|+++|+|.
T Consensus 294 G~tE~~~~~~~~-~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~ 338 (705)
T PRK06060 294 GSTEVGQTFVSN-RVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGV 338 (705)
T ss_pred eccccCceEEec-cCCCCCcCcccccCCCcEEEEECCCCCCCCCCC
Confidence 999997543322 222335678999999999999999999999985
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=395.48 Aligned_cols=338 Identities=15% Similarity=0.148 Sum_probs=251.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHh---h-cCCC-----------CEEEEEcCCCHHHHHH
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT---M-FSKG-----------DAIAIDMPMTVRAVII 249 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~---~-v~~g-----------d~V~i~~~~~~e~vva 249 (551)
+++++|+++|+++... ...++.+||+||.++++++|++|.+ + +++| |+|+|+++|+++|+++
T Consensus 70 ~~~~~p~~~Al~~~~~---g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~ 146 (746)
T PTZ00342 70 KYKLNNNKIAIVEHSC---GEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVA 146 (746)
T ss_pred HHhhcCCceeEeccCC---CCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHH
Confidence 4578999999986422 1235699999999999999999996 6 9998 9999999999999999
Q ss_pred HHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCC------
Q 008848 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDV------ 321 (551)
Q Consensus 250 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~------ 321 (551)
++||+++|++.||+++.++++++.++|+++++++|+++.... +.+..+....+. .+++++......
T Consensus 147 ~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~ 220 (746)
T PTZ00342 147 DLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLV------EGLLERKNELPHLKKLIILDTLIKSKEININK 220 (746)
T ss_pred HHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHH------HHHHHhhccCCCceEEEEECCCCccccccccc
Confidence 999999999999999999999999999999999999976432 222222222332 233332211000
Q ss_pred ------------CC-CC-----------------------------------------CCCCcchHHhhccCCCCCCCCC
Q 008848 322 ------------GI-PL-----------------------------------------REQDLSWKDFLSSVDYHPRPNY 347 (551)
Q Consensus 322 ------------~~-~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 347 (551)
.. .. ......|+++..... ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~ 295 (746)
T PTZ00342 221 EEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-----TN 295 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc-----cC
Confidence 00 00 000011122211110 01
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhc--CCCCCCEEEEecCcccchhhHHHHHHHHhCCEE
Q 008848 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI--DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (551)
Q Consensus 348 ~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~l 425 (551)
.......++|+|+|+|||||||.|||||+||+|+++.+....... ...+.+++++++|++|.++....+.+++.|+++
T Consensus 296 ~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i 375 (746)
T PTZ00342 296 YKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTI 375 (746)
T ss_pred CCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEE
Confidence 122334679999999999999999999999999988776543321 223568999999999999987677889999999
Q ss_pred EEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhc--------CccCC------------------------------
Q 008848 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NCLEG------------------------------ 467 (551)
Q Consensus 426 vl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~--------~~~~~------------------------------ 467 (551)
++.++ ++..+++.|+++++|++.++|++++.|.+. .....
T Consensus 376 ~~~~~--~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~ 453 (746)
T PTZ00342 376 NIWSK--DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISS 453 (746)
T ss_pred EEeCC--CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 99863 678999999999999999999999988652 10000
Q ss_pred ----CCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCC-CCceEEEEC
Q 008848 468 ----LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILD 540 (551)
Q Consensus 468 ----~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~g~~v~IlD 540 (551)
.-.++||.+++||+++++++.+++...++ ++++++||+||+++..+...+ .....+++|+|+ ||++++|+|
T Consensus 454 kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~gYGlTEt~~~~~~~~~-~~~~~gsvG~p~~pg~e~ki~d 529 (746)
T PTZ00342 454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQGYGLTETTGPIFVQHA-DDNNTESIGGPISPNTKYKVRT 529 (746)
T ss_pred HHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEEeeccCcccceeeeccC-CCCCcccccCcCCCcEEEEEec
Confidence 00268999999999999999999987765 899999999999765443332 334678999998 999999998
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=387.34 Aligned_cols=339 Identities=17% Similarity=0.089 Sum_probs=258.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+++.++ ++||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 16 ~~~~~p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl 87 (563)
T PLN02860 16 LATLRGNAVVTISGNR--------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPL 87 (563)
T ss_pred HHHhcCCceEEecCCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeC
Confidence 4578999999997665 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHh-hcCCCc-eEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL-GAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~~~-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
+|.++.+++.+++++++++++++++... .....+. ...+.. ..++.................++++......
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (563)
T PLN02860 88 NYRWSFEEAKSAMLLVRPVMLVTDETCS------SWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG 161 (563)
T ss_pred CcccCHHHHHHHHHhcCceEEEEecccc------hHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccc
Confidence 9999999999999999999999987531 1111111 111111 1121111000000000001111111111000
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
.........++++++|+|||||||.||||+++|++++.........++++++|++++..|++|+.++..++.+++.
T Consensus 162 ----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~ 237 (563)
T PLN02860 162 ----TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMV 237 (563)
T ss_pred ----cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHc
Confidence 0001112356899999999999999999999999998776666567889999999999999999998888899999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc--CCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
|+++++.+ .+++..+++.|+++++|++.++|+++..|++.... ...++++||.+++||+++++++.+++.+.+++.+
T Consensus 238 G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 316 (563)
T PLN02860 238 GACHVLLP-KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK 316 (563)
T ss_pred CceEEecC-CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCc
Confidence 99999976 57889999999999999999999999999865322 2245789999999999999999999998887789
Q ss_pred eeccccccccccccccCCcCC----------------------CCCcCccCCCCCCceEEEECCC
Q 008848 500 IIESCGGTELSSAYIQGSLLQ----------------------PQAFGAFSTATMTAGLVILDEC 542 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----------------------~~~~~~iG~p~~g~~v~IlD~~ 542 (551)
++|.||+||++..++...... .....++|+|++|++++|+|++
T Consensus 317 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~ 381 (563)
T PLN02860 317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE 381 (563)
T ss_pred eecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC
Confidence 999999999875433221111 0112479999999999999854
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=375.04 Aligned_cols=344 Identities=24% Similarity=0.245 Sum_probs=276.9
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++.+|+++|+.+.+. ++||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 14 ~~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l 85 (513)
T PRK07656 14 AARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPL 85 (513)
T ss_pred HHHHCCCCeEEEeCCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEec
Confidence 3467899999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
++.++.+++..++++++++++++++... ............ ..+++...... ........+|+++......
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~- 156 (513)
T PRK07656 86 NTRYTADEAAYILARGDAKALFVLGLFL------GVDYSATTRLPALEHVVICETEED--DPHTEKMKTFTDFLAAGDP- 156 (513)
T ss_pred CcccCHHHHHHHHhhcCceEEEEchhhH------HHHHHHHhccCCccEEEEEcCccc--ccCccccccHHHHHhcCCC-
Confidence 9999999999999999999999987532 111112122222 12222111110 0001122456666543321
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH-HHHHHHHh
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLN 421 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~ 421 (551)
........++++++|+|||||||.||||.++|+++.+.+......+++++++++++..|++|++++. .++.++..
T Consensus 157 ----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (513)
T PRK07656 157 ----AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMR 232 (513)
T ss_pred ----CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHc
Confidence 1122345678999999999999999999999999988888777788999999999999999998874 47889999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.+.++..+++
T Consensus 233 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~ 311 (513)
T PRK07656 233 GATILPLP-VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVL 311 (513)
T ss_pred CceEEecC-cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceE
Confidence 99998865 56789999999999999999999999999887655555788999999999999999999998888733899
Q ss_pred ccccccccccccccCCcCCCC--CcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQ--AFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~--~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||+++..+.+...... ..+++|+|++|++++|+|++++++|.|.
T Consensus 312 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~ 362 (513)
T PRK07656 312 TGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGE 362 (513)
T ss_pred eEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCC
Confidence 999999997655444332222 2678999999999999999999999874
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=372.72 Aligned_cols=339 Identities=22% Similarity=0.186 Sum_probs=255.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++.+|+.+|+.+... +.++.+||+|+.+++.++|++|++. +..||+|+|++.|+++|+++.+||+.+|++.||+
T Consensus 25 ~~~~~~~~~a~~~~~~----~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~ 100 (613)
T COG1022 25 RVKDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100 (613)
T ss_pred HhhcCCcceeEeeecC----CcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEec
Confidence 4578888889987764 6888999999999999999999999 9779999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc---eEEecC-CCCCCCCCC------CCCCcchH
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK---AIVLPA-IGNDVGIPL------REQDLSWK 333 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~---~~vv~~-~~~~~~~~~------~~~~~~~~ 333 (551)
++..++++++++|+++++++|+++... ..+....+....+.. ...+.. ......... ..+...+
T Consensus 101 y~t~~~~~~~~iL~~se~~~i~~e~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (613)
T COG1022 101 YSTSTPEQLAYILNESESKVIFVENQE-----LLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF- 174 (613)
T ss_pred CCCCCHHHHHHHHhcCCceEEEecchH-----HHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-
Confidence 999999999999999999999999752 112222222221110 000000 000000000 0000111
Q ss_pred HhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC-CCCCCEEEEecCcccchhh
Q 008848 334 DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGP 412 (551)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~ 412 (551)
.+ ... .......+..+||+|.|+|||||||+|||||++|+|++..+........ ++++|++++++|++|.+..
T Consensus 175 ~~-~~~-----~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er 248 (613)
T COG1022 175 LI-DSA-----GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFER 248 (613)
T ss_pred hh-ccc-----ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHH
Confidence 01 110 0111223567899999999999999999999999999999999988886 9999999999999999887
Q ss_pred HH-HHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhc--------Cc-------------------
Q 008848 413 VI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NC------------------- 464 (551)
Q Consensus 413 ~~-~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~--------~~------------------- 464 (551)
.. ....+..|++... ..++..+++.+++.++|++.++|.+|+.+.+. ..
T Consensus 249 ~~~~~~~~~~g~~~~~---~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~ 325 (613)
T COG1022 249 AFEGGLALYGGVTVLF---KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325 (613)
T ss_pred HHHHHHHhhcceEEEe---cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 64 4444555544444 34778999999999999999999999887542 00
Q ss_pred ----------------------cCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCC
Q 008848 465 ----------------------LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ 522 (551)
Q Consensus 465 ----------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 522 (551)
..... .++|++++||+++++++..+++.. ++++.++||+|||+..++... ....
T Consensus 326 ~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~-~~~~ 401 (613)
T COG1022 326 ALLGGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNP-PDRF 401 (613)
T ss_pred hhcccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEcc-ccCc
Confidence 00111 478999999999999999988866 489999999999987655443 3456
Q ss_pred CcCccCCCCCCceEEEECCCCCccC
Q 008848 523 AFGAFSTATMTAGLVILDECGVPYV 547 (551)
Q Consensus 523 ~~~~iG~p~~g~~v~IlD~~g~~vp 547 (551)
..+++|+|+|+++++|.| +|+.+=
T Consensus 402 ~~gtvG~p~p~~evKI~d-~GEilV 425 (613)
T COG1022 402 VLGTVGKPLPGIEVKIAD-DGEILV 425 (613)
T ss_pred ccCCcCCcCCCceEEEcc-CceEEE
Confidence 778999999999999998 666543
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=374.57 Aligned_cols=323 Identities=21% Similarity=0.241 Sum_probs=261.9
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+++++||++|+++.+. ++||+||.++++++|++|.+...+|++|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 81 (487)
T PRK07638 10 HASLQPNKIAIKENDR--------VLTYKDWFESVCKVANWLNEKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLD 81 (487)
T ss_pred HHHhCCCCeEEecCCc--------EeeHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecC
Confidence 3478999999998776 99999999999999999998833899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
+.++.+++.++++.+++++++++...... +. . ....++.+. .+.+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~------~~---~-~~~~~~~~~---------------~~~~~~~~~~~--- 133 (487)
T PRK07638 82 IKWKQDELKERLAISNADMIVTERYKLND------LP---D-EEGRVIEID---------------EWKRMIEKYLP--- 133 (487)
T ss_pred ccCCHHHHHHHHHhCCCCEEEEecccccc------hh---h-ccceEEEeh---------------hhhhhhhhccc---
Confidence 99999999999999999999998753211 00 0 001111111 11111111110
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCE
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (551)
.........+++++|+|||||||.||||+++|++++..+......++++++|+++...++.|+.+++.++.++..|++
T Consensus 134 --~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~ 211 (487)
T PRK07638 134 --TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQT 211 (487)
T ss_pred --cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcE
Confidence 011112234678999999999999999999999998888777777889999999999999999888888899999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 425 lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+++.+ .+++..+++.|+++++|++.++|+++..|.+... . ..+.+.++++|++++.++.+++...+++++++|.|
T Consensus 212 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~Y 286 (487)
T PRK07638 212 VHLMR-KFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFY 286 (487)
T ss_pred EEEcC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEe
Confidence 99876 5788999999999999999999999999987632 2 34556678899999999999999988888999999
Q ss_pred cccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|+||++..+...........+++|+|++|++++|+|++|+++|+|.
T Consensus 287 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~ 332 (487)
T PRK07638 287 GASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGE 332 (487)
T ss_pred cCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCC
Confidence 9999986544433223345679999999999999999999999884
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=374.58 Aligned_cols=336 Identities=24% Similarity=0.227 Sum_probs=256.5
Q ss_pred cCCCCCCceEEEE-ecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVW-REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~-~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
+|+++||++|+++ ... ++||+||+++++++|..|++. +++||+|+|+++|+++++++++||+++|++++|
T Consensus 4 ~a~~~pd~~a~~~~~~~--------~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~ 75 (417)
T PF00501_consen 4 QAQRYPDRIALIDDEGR--------SLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVP 75 (417)
T ss_dssp HHHHSTTSEEEEETTTE--------EEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEE
T ss_pred HHhhCCCceEEEECCCE--------EEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccc
Confidence 4688999999999 444 999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHh---hcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL---GAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~---~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
++|.++.+++.++++.+++++||+ .+.. +... ..++. ..... .+.++..... ...+.+..
T Consensus 76 l~~~~~~~~~~~~l~~~~~~~ii~-~~~~---d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 140 (417)
T PF00501_consen 76 LDPSLSEDELRHILRQSGPKVIIT-SEAV---DSEP-LKKLKSIFKQEDPSSSIIILDRDDL----------PKKEALKS 140 (417)
T ss_dssp EETTSSHHHHHHHHHHHTESEEEE-CHHH---SCHH-HHHHHHHHTTSTTTEEEEEESHSSC----------TTCHHHHH
T ss_pred cccccccccccccccccceeEEEE-eccc---cccc-cccchhhhccccccccccccccccc----------cccccccc
Confidence 999999999999999999999997 1000 0111 22222 11111 2333322111 00111111
Q ss_pred cCCCCCCCCCCCCCC-CCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh--hhcCCCCCCEEEEecCcccchhh-H
Q 008848 338 SVDYHPRPNYYSPVY-NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--AHIDLKVGDVYCWPTNLGWVMGP-V 413 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~-~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~-~ 413 (551)
.... .....+ ..++++++|+|||||||.||+|+++|+++.+.+.... ...+++ |++++..|++|..++ .
T Consensus 141 ~~~~-----~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~ 213 (417)
T PF00501_consen 141 ASLS-----DEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLIS 213 (417)
T ss_dssp HHHC-----HCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHH
T ss_pred cccc-----cccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccc
Confidence 1000 000000 0468999999999999999999999999988877653 223333 699999999999999 7
Q ss_pred HHHHHHHhCCEEEEecCCC--ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccC----CCCCCCccEEEeecCCCChhh
Q 008848 414 ILFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE----GLDWTKIRSFASTGETSNVDD 487 (551)
Q Consensus 414 ~~~~~l~~G~~lvl~~~~~--~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~----~~~l~sLr~i~~gGe~l~~~~ 487 (551)
.++.++..|+++++++... ++..+++.|+++++|++.++|++++.|++..... ..++++||.+++||+++++++
T Consensus 214 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 293 (417)
T PF00501_consen 214 ALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDL 293 (417)
T ss_dssp HHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHH
T ss_pred cccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhh
Confidence 8999999999999988432 2466899999999999999999999998743221 347889999999999999999
Q ss_pred HHHHHHhccCCceeccccccccccccccCC-cCCCCCcCccCCCCCCceEEEECCC-CCccCCCC
Q 008848 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGS-LLQPQAFGAFSTATMTAGLVILDEC-GVPYVRTF 550 (551)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~~~~iG~p~~g~~v~IlD~~-g~~vp~Gv 550 (551)
.+++++.++..++++.||+||++..++... .......+++|+|++|++++|+|++ ++++|+|.
T Consensus 294 ~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~ 358 (417)
T PF00501_consen 294 LRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGE 358 (417)
T ss_dssp HHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTS
T ss_pred ccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccccccc
Confidence 999999887558999999999987654332 1222356789999999999999988 99999874
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=375.75 Aligned_cols=339 Identities=20% Similarity=0.204 Sum_probs=268.1
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+++.+. .+++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 33 ~~~~~~~~a~~~~~~------~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 106 (537)
T PLN02246 33 LSEFSDRPCLIDGAT------GRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTAN 106 (537)
T ss_pred HHhCCCCeEEEecCC------CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCC
Confidence 357899999987532 13899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
|.++.+++..++++++++++|+++... ..+..+.......++.+.... .....+.++......
T Consensus 107 ~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~--- 169 (537)
T PLN02246 107 PFYTPAEIAKQAKASGAKLIITQSCYV------DKLKGLAEDDGVTVVTIDDPP--------EGCLHFSELTQADEN--- 169 (537)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHHhhcCCceEEEeCCCC--------CCceeHHHHhcCCCC---
Confidence 999999999999999999999987532 111222111111222222110 122334444332211
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh----hcCCCCCCEEEEecCcccchhhH-HHHHHH
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGPV-ILFSSF 419 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l 419 (551)
..+.....++++++++|||||||.||||+++|+++++.+.+... .+.++++|++++..|++|..++. .++.++
T Consensus 170 --~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l 247 (537)
T PLN02246 170 --ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGL 247 (537)
T ss_pred --CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHH
Confidence 11223446789999999999999999999999999877654432 46788999999999999998874 467789
Q ss_pred HhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 420 ~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++++.+++..
T Consensus 248 ~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~ 326 (537)
T PLN02246 248 RVGAAILIMP-KFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAV 326 (537)
T ss_pred hcCCEEEEeC-CCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCe
Confidence 9999999986 467889999999999999999999999998765444556889999999999999999999999887788
Q ss_pred eeccccccccccccccCCc----CCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 500 IIESCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+++.||+||++.+++.... ......+++|+|++|++++|+| ++++++|+|.
T Consensus 327 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~ 382 (537)
T PLN02246 327 LGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQ 382 (537)
T ss_pred EeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCC
Confidence 9999999998764332211 1123457899999999999999 5789999874
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=383.47 Aligned_cols=341 Identities=16% Similarity=0.106 Sum_probs=255.5
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+++.+. .+.++++||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 48 ~a~~~p~~~a~~~~~~---~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl 124 (614)
T PRK08180 48 WAQEAPDRVFLAERGA---DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPV 124 (614)
T ss_pred HHHHCCCCceeeeccC---CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeee
Confidence 3478999999987532 12356899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC-----HHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhcc
Q 008848 264 ADSFA-----AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (551)
Q Consensus 264 ~~~~~-----~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~ 338 (551)
+|.++ .+++.+++++++++++|+++... ....+.... ......++... .. ......+|+++...
T Consensus 125 ~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~----~~~~~~~~~-~~~~~~i~~~~-~~-----~~~~~~~~~~~~~~ 193 (614)
T PRK08180 125 SPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA----FARALAAVV-PADVEVVAVRG-AV-----PGRAATPFAALLAT 193 (614)
T ss_pred ccccccccCCHHHHHHHHhcCCCcEEEEcCHHH----HHHHHhhhc-cCCceEEEecC-CC-----CCcccccHHHHhcc
Confidence 99998 79999999999999999975310 000000000 00111222211 00 00112456666543
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCC--CCCEEEEecCcccchhh-HHH
Q 008848 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK--VGDVYCWPTNLGWVMGP-VIL 415 (551)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~~~~~~~~~-~~~ 415 (551)
... ...........++++++|+|||||||.||||+++|++++..+......+++. .++++++++|++|..+. +.+
T Consensus 194 ~~~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~ 271 (614)
T PRK08180 194 PPT--AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNL 271 (614)
T ss_pred ccc--cchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHH
Confidence 211 0001111234578999999999999999999999999988777665556653 56899999999998886 457
Q ss_pred HHHHHhCCEEEEecCCCCh---hhHHHHHHHcCCcEEEecHHHHHHHHhcC----ccCCCCCCCccEEEeecCCCChhhH
Q 008848 416 FSSFLNGATLALYQGSPLE---RSFGKFVQDAGVTVLGTVPSLVKAWRNTN----CLEGLDWTKIRSFASTGETSNVDDD 488 (551)
Q Consensus 416 ~~~l~~G~~lvl~~~~~~~---~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~----~~~~~~l~sLr~i~~gGe~l~~~~~ 488 (551)
+.+++.|+++++.++.+++ ..+++.|+++++|++.++|+++..|++.. .....++++||.+++||+++++++.
T Consensus 272 ~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~ 351 (614)
T PRK08180 272 GIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVW 351 (614)
T ss_pred HHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHH
Confidence 7899999999997644443 46788899999999999999999887632 1123457899999999999999998
Q ss_pred HHHHHh----cc-CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCC
Q 008848 489 LWLSSK----AW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542 (551)
Q Consensus 489 ~~~~~~----~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~ 542 (551)
+++.+. ++ ++++++.||+||++..++.... .....+++|+|++|++++|+|++
T Consensus 352 ~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~d~~ 409 (614)
T PRK08180 352 DRLDRVAEATCGERIRMMTGLGMTETAPSATFTTG-PLSRAGNIGLPAPGCEVKLVPVG 409 (614)
T ss_pred HHHHHHHHhhcCCCceeeeeecccccCCceEeccc-ccCCCCcccCccCCcEEEEecCC
Confidence 888764 22 3679999999999754433222 23456899999999999999864
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=372.45 Aligned_cols=341 Identities=21% Similarity=0.201 Sum_probs=273.6
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+.+.++ ++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 10 ~~~~p~~~a~~~~~~--------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 81 (515)
T TIGR03098 10 AARLPDATALVHHDR--------TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPIN 81 (515)
T ss_pred HHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCC
Confidence 367999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
+.++.+++..+++++++++++++.... +.+......... ..+.+..... ..........|+++......
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 152 (515)
T TIGR03098 82 PLLKAEQVAHILADCNVRLLVTSSERL------DLLHPALPGCHDLRTLILVGEPAH--ASEGGGESPSWPKLLALGDA- 152 (515)
T ss_pred CCCCHHHHHHHHHcCCCeEEEEccchh------hhhHhhhhcccccceEEEecCccc--ccCCccccccHHHhhccccc-
Confidence 999999999999999999999986432 111122112111 2222221111 00111233456665443221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhC
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (551)
........+++++|+|||||||.||||+++|+++...+......+.+.++|++++..|++|+.++..++.++..|
T Consensus 153 -----~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 227 (515)
T TIGR03098 153 -----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVG 227 (515)
T ss_pred -----cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcC
Confidence 112233457899999999999999999999999988887777778899999999999999999988889999999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceec
Q 008848 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (551)
Q Consensus 423 ~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (551)
+++++.+ ..++..+++.++++++|++.++|+++..|.+... ...+++++|.+++||+++++++.+.+++.+++..+++
T Consensus 228 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 305 (515)
T TIGR03098 228 ATVVLHD-YLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFL 305 (515)
T ss_pred CEEEEcC-CCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEee
Confidence 9999876 4688999999999999999999999999886432 2235789999999999999999999998887788999
Q ss_pred cccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.||+||++..+...........+++|+|++|++++|+|++|+++|.|.
T Consensus 306 ~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~ 353 (515)
T TIGR03098 306 MYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGE 353 (515)
T ss_pred eeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCC
Confidence 999999875433222222345679999999999999999999998763
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=389.34 Aligned_cols=344 Identities=17% Similarity=0.165 Sum_probs=248.9
Q ss_pred cCCCCCCceEEEEecC-----------CCC--------CCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 008848 185 HRRKEDNTVAIVWRED-----------RCD--------ESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~-----------~~~--------~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~ 244 (551)
+++++||++|+.+... .+. .+.++++||+||+++++++|++|+++ +++||+|+|+++|++
T Consensus 78 ~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 157 (700)
T PTZ00216 78 ICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRW 157 (700)
T ss_pred HHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH
Confidence 4589999999998521 000 12467999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc--CCC-ceEEecCCCCCC
Q 008848 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA--APL-KAIVLPAIGNDV 321 (551)
Q Consensus 245 e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~-~~~vv~~~~~~~ 321 (551)
||++++|||+++|++++|+++.++++++.+++++++++++|++.... ..+...... .+. .++++......
T Consensus 158 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~~~~~ii~~~~~~~~- 230 (700)
T PTZ00216 158 EWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV------PNLLRLMKSGGMPNTTIIYLDSLPAS- 230 (700)
T ss_pred HHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH------HHHHHhhhhccCCceEEEEECCCccc-
Confidence 99999999999999999999999999999999999999999986421 111111111 111 22222211100
Q ss_pred CCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhc-----CCCC
Q 008848 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKV 396 (551)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~ 396 (551)
.........+|++++...... ...........++|++||+|||||||.||||+++|+|+++.+.+....+ .+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~ 309 (700)
T PTZ00216 231 VDTEGCRLVAWTDVVAKGHSA-GSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEE 309 (700)
T ss_pred cccCCceEEEHHHHHHhCCcc-ccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCC
Confidence 000111345677776544210 0011112334679999999999999999999999999988776654332 2478
Q ss_pred CCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCChhhHHH-------HHHHcCCcEEEecHHHHHHHHhcCcc----
Q 008848 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK-------FVQDAGVTVLGTVPSLVKAWRNTNCL---- 465 (551)
Q Consensus 397 ~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~-------~i~~~~vt~l~~~Ps~l~~l~~~~~~---- 465 (551)
+|++++++|++|.++.......++.|+++++. ++..+.+ .++++++|++.++|++++.+.+....
T Consensus 310 ~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~ 385 (700)
T PTZ00216 310 DETYCSYLPLAHIMEFGVTNIFLARGALIGFG----SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPP 385 (700)
T ss_pred CCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC----CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhc
Confidence 89999999999988865445557777776652 2334433 68999999999999999887642100
Q ss_pred ---------------------CCC----------------CCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccc
Q 008848 466 ---------------------EGL----------------DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508 (551)
Q Consensus 466 ---------------------~~~----------------~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (551)
... ..+++|.+++||+++++++.++++..++ +++|+||+||
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~YG~TE 463 (700)
T PTZ00216 386 VGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQGWGLTE 463 (700)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhhccCccc
Confidence 000 0157999999999999999887766554 8999999999
Q ss_pred cccccccCCcCCCCCcCccCCCCCCceEEEECCCC
Q 008848 509 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG 543 (551)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g 543 (551)
+++..+... ......+++|+|++|++++|+|+++
T Consensus 464 t~~~~~~~~-~~~~~~~svG~p~~g~evkI~d~~~ 497 (700)
T PTZ00216 464 TVCCGGIQR-TGDLEPNAVGQLLKGVEMKLLDTEE 497 (700)
T ss_pred ccccccccC-CCCCCCCCcCCcCCCeEEEEeechh
Confidence 976544332 2234568999999999999999754
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=375.23 Aligned_cols=340 Identities=17% Similarity=0.144 Sum_probs=262.6
Q ss_pred CCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+.+|+++|+++...+ .++||+||+++++++|++|++ . +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 50 ~~~~~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 123 (560)
T PLN02574 50 HNHNGDTALIDSSTG------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMN 123 (560)
T ss_pred cccCCCCEEEECCCC------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcC
Confidence 468999999975431 279999999999999999999 8 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
|.++.+++.+++++++++++++++... ..+.. ....++.+..... .. ........|.++......
T Consensus 124 p~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~--- 188 (560)
T PLN02574 124 PSSSLGEIKKRVVDCSVGLAFTSPENV---------EKLSP-LGVPVIGVPENYD-FD-SKRIEFPKFYELIKEDFD--- 188 (560)
T ss_pred cccCHHHHHHHHHhcCCEEEEECHHHH---------HHHHh-cCCcEEecCcccc-cc-cCccCcccHHHHhhcCCc---
Confidence 999999999999999999999987531 11111 1111222211000 00 000122345554433221
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh----hcC-CCCCCEEEEecCcccchhhH-HHHHH
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HID-LKVGDVYCWPTNLGWVMGPV-ILFSS 418 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~-~~~~d~~l~~~~~~~~~~~~-~~~~~ 418 (551)
........++++++|+|||||||.||||+++|++++..+..... .+. ....++++..+|++|..++. .++.+
T Consensus 189 --~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 266 (560)
T PLN02574 189 --FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGL 266 (560)
T ss_pred --ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHH
Confidence 11122345689999999999999999999999999877654432 122 23567889999999998874 45677
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc-CCCCCCCccEEEeecCCCChhhHHHHHHhccC
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~-~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~ 497 (551)
+..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.... ...+++++|.+++||+++++++.+++.+.+++
T Consensus 267 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~ 345 (560)
T PLN02574 267 LSLGSTIVVMR-RFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPH 345 (560)
T ss_pred HhcCCEEEEec-CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCC
Confidence 88999999876 57889999999999999999999999999876432 34568899999999999999999999888877
Q ss_pred CceeccccccccccccccCCc-CCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 498 NAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+++++.||+||++...+.... ......+++|+|++|++++|+| ++|+++|+|.
T Consensus 346 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~ 400 (560)
T PLN02574 346 VDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGN 400 (560)
T ss_pred CcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCC
Confidence 899999999999754332221 1224567899999999999999 7899999885
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=372.22 Aligned_cols=350 Identities=18% Similarity=0.170 Sum_probs=268.9
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++.+|+++|+++.+. ..+..+.+||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 32 ~~~~p~~~a~~~~~~--~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 109 (538)
T TIGR03208 32 VANCPDKPALTAYRD--GHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLM 109 (538)
T ss_pred HHHCCCceEEEeecc--cCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccC
Confidence 467899999986422 112345899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
|.++.+++.+++++++++++++++.+.. ..............+. .++++... ....+++++......
T Consensus 110 ~~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 178 (538)
T TIGR03208 110 PIFRERELSFMLNHADSKVFVVPSVFRG-FDHAAMARELQSKLPALRQVVVIDGD----------GDDSFDRVLMTPERD 178 (538)
T ss_pred cccCHHHHHHHHHhcCCeEEEEcccccc-ccHHHHHHHHhccCCcceEEEEecCC----------CCcCHHHHhhccccc
Confidence 9999999999999999999999875420 0011111111122221 12222111 112344333211100
Q ss_pred CCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHH
Q 008848 343 PRPN---YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (551)
Q Consensus 343 ~~~~---~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (551)
.... ........++++++|+|||||||.||||+++|++++..+......++++.+|++++.+|++|..+. +.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~ 258 (538)
T TIGR03208 179 DTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMP 258 (538)
T ss_pred cccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHH
Confidence 0000 011123457899999999999999999999999999888877777888999999999999998876 568889
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCC
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (551)
++.|+++++.+ .+++..+++.|+++++|++.++|+++..+.........+++++|.+++||+++++++.+++.+.++ +
T Consensus 259 l~~g~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~-~ 336 (538)
T TIGR03208 259 LILNATAVLQD-IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLG-A 336 (538)
T ss_pred HHcCCEEEecC-ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHcC-C
Confidence 99999999865 568899999999999999999999999887654333456789999999999999999998887775 7
Q ss_pred ceeccccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 499 AIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+++|.||+||++...+..... ......++|+|++|++++|+|++|+++|+|.
T Consensus 337 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~ 389 (538)
T TIGR03208 337 LIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGE 389 (538)
T ss_pred eEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCC
Confidence 899999999987654332211 1122458999999999999999999999874
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-43 Score=386.39 Aligned_cols=347 Identities=17% Similarity=0.140 Sum_probs=253.9
Q ss_pred cCCCCCCceEEEEec----------CC-----CCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHH
Q 008848 185 HRRKEDNTVAIVWRE----------DR-----CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVI 248 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~----------~~-----~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vv 248 (551)
.++++||++|+.+.. .+ ...+.++.+||+||+++++++|++|.++ +++||+|+|+++|++||++
T Consensus 67 ~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~ 146 (696)
T PLN02387 67 SCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLI 146 (696)
T ss_pred HHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHH
Confidence 357899999995421 00 0124567799999999999999999999 9999999999999999999
Q ss_pred HHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc--eEEecCCCCCCCC---
Q 008848 249 IYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGI--- 323 (551)
Q Consensus 249 a~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~vv~~~~~~~~~--- 323 (551)
++|||+++|+++||+++.++++++.++|++++++++|++.... ..+..+....+.. +++++........
T Consensus 147 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 220 (696)
T PLN02387 147 ALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL------KKLIDISSQLETVKRVIYMDDEGVDSDSSLS 220 (696)
T ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH------HHHHHHhhccCCceEEEEECCCCchhhhhhh
Confidence 9999999999999999999999999999999999999986532 2222222222222 2222211110000
Q ss_pred -CCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhc-CCCCCCEEE
Q 008848 324 -PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 401 (551)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l 401 (551)
.......+|+++...... .........++|+++|+|||||||.||||++||+|++..+......+ .++++|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l 296 (696)
T PLN02387 221 GSSNWTVSSFSEVEKLGKE----NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYL 296 (696)
T ss_pred ccCCcEEEEHHHHHHhhcc----CCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEE
Confidence 001112356666544322 01112234579999999999999999999999999988776654443 578999999
Q ss_pred EecCcccchhhHHHHHHHHhCCEEEEecCC-----C--ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccC--------
Q 008848 402 WPTNLGWVMGPVILFSSFLNGATLALYQGS-----P--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE-------- 466 (551)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~-----~--~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~-------- 466 (551)
+++|++|..+....+..+..|+++.+.... . .+..+++.++++++|++.++|++++.|.+.....
T Consensus 297 ~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~ 376 (696)
T PLN02387 297 AYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLA 376 (696)
T ss_pred EECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHH
Confidence 999999999886655667788887663211 0 1234567899999999999999999886431000
Q ss_pred -----------------------C----------------CCCCCccEEEeecCCCChhhHHHHHHhccCCceecccccc
Q 008848 467 -----------------------G----------------LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (551)
Q Consensus 467 -----------------------~----------------~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (551)
. ...+++|.+++||+++++++.+++...++ ++++++||+|
T Consensus 377 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g-~~v~~~YG~T 455 (696)
T PLN02387 377 KKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLG-APIGQGYGLT 455 (696)
T ss_pred HHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcC-CCeeEeechh
Confidence 0 00158999999999999999887776665 8999999999
Q ss_pred ccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCC
Q 008848 508 ELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECG 543 (551)
Q Consensus 508 E~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g 543 (551)
|++..++.... .....+++|+|+|+++++|+| +++
T Consensus 456 Et~~~~~~~~~-~~~~~gsvG~p~p~~evkivd~~~~ 491 (696)
T PLN02387 456 ETCAGATFSEW-DDTSVGRVGPPLPCCYVKLVSWEEG 491 (696)
T ss_pred hcccceeecCc-ccCCCCccCCCCCceEEEEeecccc
Confidence 99765444332 234568999999999999998 443
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=373.99 Aligned_cols=345 Identities=19% Similarity=0.164 Sum_probs=262.9
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
++.+|+++|++..++ .+||+||+++++++|++|.+ . +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 34 a~~~p~~~al~~~~~--------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l 105 (562)
T PRK05677 34 CQRFADKPAFSNLGK--------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNT 105 (562)
T ss_pred HHhCCCCeeEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeec
Confidence 467899999998665 89999999999999999987 6 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCC-------------------CC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG-------------------IP 324 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-------------------~~ 324 (551)
+|.++.+++.+++++++++++|+++... ....++......+.+++........ ..
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK05677 106 NPLYTAREMEHQFNDSGAKALVCLANMA------HLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAY 179 (562)
T ss_pred CCCCCHHHHHHHHhccCceEEEEecchh------hhHHHhhhccCcceeEEecccccccchhhhhcccchhhcccccccc
Confidence 9999999999999999999999976432 1112222111122222211100000 00
Q ss_pred CCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC--CCC-CCEEE
Q 008848 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKV-GDVYC 401 (551)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~-~d~~l 401 (551)
..+....+.+.+..... .........++++++|+|||||||+||||+++|+++...+......+. +.. .++++
T Consensus 180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK05677 180 HLPQAVKFNDALAKGAG----QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI 255 (562)
T ss_pred CCcccccHHHHHhcCCC----CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence 00112233443332221 111122345789999999999999999999999999876655444332 333 36788
Q ss_pred EecCcccchhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeec
Q 008848 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (551)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gG 480 (551)
+..|+.|..+. +.++.++..|++.++.+...++..+++.|+++++|++.++|+++..+.+.......+++++|.+++||
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG 335 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGG 335 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcC
Confidence 89999998887 45677888899888777556788999999999999999999999999876544445678999999999
Q ss_pred CCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+++++++.+++.+.++ +++++.||+||++.++.... .....++++|+|++|++++|+|++|+++|.|.
T Consensus 336 ~~~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~-~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~ 403 (562)
T PRK05677 336 MALQLATAERWKEVTG-CAICEGYGMTETSPVVSVNP-SQAIQVGTIGIPVPSTLCKVIDDDGNELPLGE 403 (562)
T ss_pred ccCCHHHHHHHHHHcC-CCeeccCCccccCcceeecC-ccCCCCCccCccCCCCEEEEECCCCCCCCCCC
Confidence 9999999998887764 89999999999876543322 23345678999999999999999999999884
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=370.01 Aligned_cols=340 Identities=19% Similarity=0.175 Sum_probs=278.7
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++.+|+++|+.+.++ .+||+||+++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 15 ~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~ 86 (521)
T PRK06187 15 GARKHPDKEAVYFDGR--------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPI 86 (521)
T ss_pred HHHHCCCceEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEec
Confidence 4578999999999887 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
++.++.+++..+++.+++++++++.... +.+.++....+. +.+++...... ........+.+++.....
T Consensus 87 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 157 (521)
T PRK06187 87 NIRLKPEEIAYILNDAEDRVVLVDSEFV------PLLAAILPQLPTVRTVIVEGDGPAA---PLAPEVGEYEELLAAASD 157 (521)
T ss_pred ccCCCHHHHHHHHHhcCCeEEEEcchHH------HHHHHHhhccCCccEEEEecCcccc---ccccccccHHHHhhcCCc
Confidence 9999999999999999999999987532 223333333322 22222221110 111234556666544322
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
........++++++++|||||||.||+|.++|+++.+........++++++|++++.+|++|..+....+.++..
T Consensus 158 -----~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 232 (521)
T PRK06187 158 -----TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMA 232 (521)
T ss_pred -----cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHh
Confidence 112234456889999999999999999999999999888877778899999999999999999888766779999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++++++. .++..+++.|+++++|++.++|++++.|.+.......+++++|.+++|||++++++.+++.+.+ +++++
T Consensus 233 G~~~v~~~~-~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~ 310 (521)
T PRK06187 233 GAKQVIPRR-FDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLV 310 (521)
T ss_pred CCEEEecCC-CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-Ccchh
Confidence 999999875 4888999999999999999999999999887655556788999999999999999999998887 58999
Q ss_pred ccccccccccccccCCcCCC-----CCcCccCCCCCCceEEEECCCCCccCC
Q 008848 502 ESCGGTELSSAYIQGSLLQP-----QAFGAFSTATMTAGLVILDECGVPYVR 548 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~-----~~~~~iG~p~~g~~v~IlD~~g~~vp~ 548 (551)
|.||+||++........... ...+++|+|++|+.++|+|++++++|.
T Consensus 311 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~ 362 (521)
T PRK06187 311 QGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPP 362 (521)
T ss_pred eeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCC
Confidence 99999998765443322221 256799999999999999999999988
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=372.25 Aligned_cols=342 Identities=20% Similarity=0.194 Sum_probs=271.4
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
++++|+++|+++.+. ++||+||.++++++|+.|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 20 a~~~~~~~a~~~~~~--------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 91 (546)
T PRK08314 20 ARRYPDKTAIVFYGR--------AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPV 91 (546)
T ss_pred HHHcCCCcceeecCc--------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeec
Confidence 478999999999877 999999999999999999986 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCC------C------------CCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV------G------------IPL 325 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~------~------------~~~ 325 (551)
+|.++.+++.+++++++++++++++... +.............+++....... . ...
T Consensus 92 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (546)
T PRK08314 92 NPMNREEELAHYVTDSGARVAIVGSELA------PKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALA 165 (546)
T ss_pred CcCcCHHHHHHHHHhCCCeEEEEccchh------hhHHHHhhccCcceEEEecchhhcccccccCccccccccccccccc
Confidence 9999999999999999999999987532 111111111111111111100000 0 000
Q ss_pred CCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecC
Q 008848 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405 (551)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~ 405 (551)
..+...|++....... .......++++++|+|||||||.||||+++|+++++.+......+++.++|++++..|
T Consensus 166 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p 239 (546)
T PRK08314 166 PGGVVAWKEALAAGLA------PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLP 239 (546)
T ss_pred ccccccHHHHhcccCC------CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcC
Confidence 1123345555432211 1223446789999999999999999999999999988887777788999999999999
Q ss_pred cccchhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCC
Q 008848 406 LGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN 484 (551)
Q Consensus 406 ~~~~~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~ 484 (551)
++|..++ +.++.++.+|+++++.+ ..++..+++.++++++|++.++|+++..++........+++++|.+++||++++
T Consensus 240 ~~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~ 318 (546)
T PRK08314 240 LFHVTGMVHSMNAPIYAGATVVLMP-RWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMP 318 (546)
T ss_pred chHHHHHHHHHHHHHHcCCeEEecC-CCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCC
Confidence 9999887 55788999999999987 467889999999999999999999999988765445566889999999999999
Q ss_pred hhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 485 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 485 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+++.+++.+.++ .+++|.||+||++....... ......+++|+|++|++++|+| ++|+++|.|.
T Consensus 319 ~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~ 383 (546)
T PRK08314 319 EAVAERLKELTG-LDYVEGYGLTETMAQTHSNP-PDRPKLQCLGIPTFGVDARVIDPETLEELPPGE 383 (546)
T ss_pred HHHHHHHHHHcC-CcEEecccccccccceecCC-CcCCCCCccCcccCCeEEEEEeCCCCcCCCCCC
Confidence 999999988875 78999999999876543322 2223457899999999999999 4689998874
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=365.12 Aligned_cols=327 Identities=20% Similarity=0.174 Sum_probs=263.9
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
+++.+||++|+++.+. .+||+||+++++++|++|++ . +++|++|+++++|++++++++|||+++|++++|
T Consensus 11 ~a~~~p~~~a~~~~~~--------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 11 RAYLHPDRIAIITEEE--------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred HHHHCCCCeEEEECCc--------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 4578999999998766 99999999999999999986 6 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC-CceEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
+++.++.+++.+++++++++++++++.+. +....+..... ...+.+. ++.++......
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 141 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQ------NMALSMQKVSYVQRVISIT---------------SLKEIEDRKID 141 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHH------HHHHHhhhccCcceEEEec---------------chHhhhccCCC
Confidence 99999999999999999999999987532 11111111111 1111111 12222221111
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH-HHHHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFL 420 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~ 420 (551)
......++++++|+|||||||.||||+++|+++..........++++.+|+++...|+.|..+.. .++.++.
T Consensus 142 -------~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~ 214 (496)
T PRK06839 142 -------NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF 214 (496)
T ss_pred -------CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHh
Confidence 11234568899999999999999999999999876666555667889999999999999988874 4577899
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
.|+++++.+ ..++..+++.++++++|++.++|++++.+++.......+++++|.+++||+++++++.+++++. ++++
T Consensus 215 ~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~ 291 (496)
T PRK06839 215 AGGVIIVPR-KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLF 291 (496)
T ss_pred cCcEEEEcc-CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCee
Confidence 999998865 5788999999999999999999999999988765555678899999999999999999888775 4899
Q ss_pred eccccccccccccccCCc-CCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++.||+||++..++.... ......+++|+|+++++++|+|++++++|+|.
T Consensus 292 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~ 342 (496)
T PRK06839 292 GQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGE 342 (496)
T ss_pred EeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCC
Confidence 999999999854332222 12345679999999999999999999999874
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=364.52 Aligned_cols=319 Identities=20% Similarity=0.206 Sum_probs=261.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
++.++||++|+++.++ .+||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 11 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i 82 (483)
T PRK03640 11 RAFLTPDRTAIEFEEK--------KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLL 82 (483)
T ss_pred HHHhCCCceEEEeCCe--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEec
Confidence 4578999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
++.++.+++.+++++++++++++++.+.. ..... ....++++......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~---------~~~~~---------------------~~~~~~~~~~~~~~-- 130 (483)
T PRK03640 83 NTRLSREELLWQLDDAEVKCLITDDDFEA---------KLIPG---------------------ISVKFAELMNGPKE-- 130 (483)
T ss_pred CcCCCHHHHHHHHHhCCCCEEEEcchhhH---------HHhhh---------------------ccccHHHHhhcccc--
Confidence 99999999999999999999999875321 00000 00113333322111
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
.........++++++++|||||||.||||+++|+++...+......++++++|++++..|++|..++..++.++..|+
T Consensus 131 --~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~ 208 (483)
T PRK03640 131 --EAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGM 208 (483)
T ss_pred --cCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCC
Confidence 011122345689999999999999999999999998877766666788999999999999999998877889999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
++++.+ ..++..+++.|+++++|++.++|+++..|.+..... ....+||.+++||+++++...++++.. ++++++.
T Consensus 209 ~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~ 284 (483)
T PRK03640 209 RVVLVE-KFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQS 284 (483)
T ss_pred EEEecC-CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeee
Confidence 999987 468899999999999999999999999998643222 234689999999999999998887764 4889999
Q ss_pred ccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||+||++..+...... .....+++|+|++|++++|+|++ +++|.|.
T Consensus 285 YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~-~~~~~g~ 331 (483)
T PRK03640 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDG-VVVPPFE 331 (483)
T ss_pred eccCcccccccccCcccccccCCCcccccCCcEEEEecCC-CcCCCCC
Confidence 9999987543332222 23456899999999999999864 8888774
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=367.02 Aligned_cols=345 Identities=17% Similarity=0.159 Sum_probs=265.8
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+..+|++.++.+... +..+.+||.||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 20 ~~~~~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 95 (539)
T PRK07008 20 ARHAGDTEIVSRRVE----GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTIN 95 (539)
T ss_pred HhhCCCceEEEeecc----CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecc
Confidence 367788888775322 2345899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc-e-EEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-A-IVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
|.++++++.++++++++++++++..+. +....+....... . +.+..... ... ......+++++......
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~- 166 (539)
T PRK07008 96 PRLFPEQIAYIVNHAEDRYVLFDLTFL------PLVDALAPQCPNVKGWVAMTDAAH-LPA-GSTPLLCYETLVGAQDG- 166 (539)
T ss_pred cccCHHHHHHHHhccCCcEEEEcchhH------HHHHHHHhhCCCceEEEEEccCCc-ccc-CCcccccHHHHhcccCC-
Confidence 999999999999999999999987542 1122222222221 1 22221111 000 01124556666543221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHH--HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHH
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA--EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~ 420 (551)
........++++++++|||||||.||||+++|++++.... .....++++++|++++..|++|..+...++.++.
T Consensus 167 ----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~ 242 (539)
T PRK07008 167 ----DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPL 242 (539)
T ss_pred ----CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHh
Confidence 1111234568899999999999999999999999864332 2334577889999999999988877655678899
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
.|+++++.+..+++..+++.+++++||++.++|+++..|.+.......+++++|.+++||+++++++.+++...++ +++
T Consensus 243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~l 321 (539)
T PRK07008 243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYG-VEV 321 (539)
T ss_pred cCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhC-Cce
Confidence 9999999866678899999999999999999999999998765555567899999999999999999999988775 899
Q ss_pred eccccccccccccccCCcC------CC----CCcCccCCCCCCceEEEECCCCCccCC
Q 008848 501 IESCGGTELSSAYIQGSLL------QP----QAFGAFSTATMTAGLVILDECGVPYVR 548 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~------~~----~~~~~iG~p~~g~~v~IlD~~g~~vp~ 548 (551)
++.||+||++...+..... .+ ....++|+|++|++++|+|++++++|.
T Consensus 322 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~ 379 (539)
T PRK07008 322 IHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPW 379 (539)
T ss_pred ecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCC
Confidence 9999999998543322110 00 124689999999999999999998875
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=368.99 Aligned_cols=354 Identities=19% Similarity=0.164 Sum_probs=273.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+++.+.+ +.+||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 25 ~~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l 98 (559)
T PRK08315 25 TAARYPDREALVYRDQG------LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTI 98 (559)
T ss_pred HHHHCCCCeEEEEcCCC------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEec
Confidence 34789999999985431 3799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcC-------------CCceEEecCCCCCCCCCCCCCCc
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------------PLKAIVLPAIGNDVGIPLREQDL 330 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~vv~~~~~~~~~~~~~~~~ 330 (551)
+|..+.+++..++++++++++++++..... ............. +....++..... ...+..
T Consensus 99 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 172 (559)
T PRK08315 99 NPAYRLSELEYALNQSGCKALIAADGFKDS-DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE-----KHPGML 172 (559)
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecccccc-chHHHHHHhhhhhhcccccccccccCCCceeEEeeccc-----CCcccc
Confidence 999999999999999999999998753210 0000011110000 000111111110 011234
Q ss_pred chHHhhccCCCCC-CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccc
Q 008848 331 SWKDFLSSVDYHP-RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409 (551)
Q Consensus 331 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 409 (551)
.++++........ ...........+++++||+|||||||.||||.++|++++..+......++++++|+++...|+.|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 252 (559)
T PRK08315 173 NFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHC 252 (559)
T ss_pred cHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHH
Confidence 4555543321100 000111223456889999999999999999999999998888877777899999999999999998
Q ss_pred hhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhH
Q 008848 410 MGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDD 488 (551)
Q Consensus 410 ~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~ 488 (551)
.+. +.++.++..|+++++....+++..+++.++++++|++.++|+++..++........++++||.+++||++++++++
T Consensus 253 ~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~ 332 (559)
T PRK08315 253 FGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVM 332 (559)
T ss_pred HHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHH
Confidence 886 4578899999999976656788999999999999999999999998887655555678999999999999999999
Q ss_pred HHHHHhccCCceeccccccccccccccCCcCC--CCCcCccCCCCCCceEEEECCC-CCccCCCC
Q 008848 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATMTAGLVILDEC-GVPYVRTF 550 (551)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~g~~v~IlD~~-g~~vp~Gv 550 (551)
+.+.+.++..+++|.||+||++..++...... .....++|+|++|++++|+|++ |+++|.|.
T Consensus 333 ~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~ 397 (559)
T PRK08315 333 KRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGE 397 (559)
T ss_pred HHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCC
Confidence 99988887667999999999986543322211 2346799999999999999988 99999874
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=368.55 Aligned_cols=350 Identities=20% Similarity=0.158 Sum_probs=275.0
Q ss_pred cchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHH
Q 008848 172 VLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIY 250 (551)
Q Consensus 172 ~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~ 250 (551)
..|..+.+.. +++.+|+++|+.+.+. .+||.||.++++++|++|.+. +++||+|+|+++|++++++++
T Consensus 16 ~~n~~~~~~~---~a~~~~~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 84 (542)
T PRK07786 16 RQNWVNQLAR---HALMQPDAPALRFLGN--------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV 84 (542)
T ss_pred ccCHHHHHHH---HHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 3455544332 3467899999998876 899999999999999999999 999999999999999999999
Q ss_pred HHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCC
Q 008848 251 LAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQD 329 (551)
Q Consensus 251 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~ 329 (551)
+||+++|++++|+++..+.+++.++++++++++++++.... ..........+. +.+++..... ..+.
T Consensus 85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 152 (542)
T PRK07786 85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVAGGSS------DDSV 152 (542)
T ss_pred HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchH------HHHHHhhhccCccceEEEecCCC------cccc
Confidence 99999999999999999999999999999999999987532 111111111111 1122111100 1133
Q ss_pred cchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCC-CCCCEEEEecCccc
Q 008848 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL-KVGDVYCWPTNLGW 408 (551)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~~ 408 (551)
.++++++..... .........+++++++|||||||.||||+++|+++.+.+......+++ ..++++++..|+.|
T Consensus 153 ~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (542)
T PRK07786 153 LGYEDLLAEAGP-----AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFH 227 (542)
T ss_pred cCHHHHhhccCC-----CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHH
Confidence 456666543322 112223456789999999999999999999999998877766666666 67889999999999
Q ss_pred chhhHHHHHHHHhCCEEEEec-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhh
Q 008848 409 VMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487 (551)
Q Consensus 409 ~~~~~~~~~~l~~G~~lvl~~-~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~ 487 (551)
..++..++.++..|+++++.+ ..+++..+++.|+++++|++.++|+++..|.........+ .++|.+++||+++++++
T Consensus 228 ~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~ 306 (542)
T PRK07786 228 IAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTL 306 (542)
T ss_pred HHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHH
Confidence 988888899999999999975 3458889999999999999999999999998764333222 37999999999999999
Q ss_pred HHHHHHhccCCceeccccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.+++.+.+++.++++.||+||++...+..... .....+++|+|++|+.++|+|++++++|.|.
T Consensus 307 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~ 370 (542)
T PRK07786 307 LRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGE 370 (542)
T ss_pred HHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCC
Confidence 99999988878999999999997543322211 1234578999999999999999999999874
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=373.01 Aligned_cols=340 Identities=15% Similarity=0.113 Sum_probs=257.4
Q ss_pred CCCCCCceEEEEecCCC--CCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 186 RRKEDNTVAIVWREDRC--DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~--~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
++++|+++|+++.+.+. ....++++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|
T Consensus 16 a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~ 95 (552)
T PRK09274 16 AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVL 95 (552)
T ss_pred HHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEE
Confidence 46799999999864310 112234799999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcC-CC--ceEEecCCCCCCCCCCCCCCcchHHhhccC
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-PL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (551)
++|.++.+++.+++++++++++|+++.. .....+.... .. ..+.+... .......++++....
T Consensus 96 l~~~~~~~~l~~~l~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~ 161 (552)
T PRK09274 96 VDPGMGIKNLKQCLAEAQPDAFIGIPKA-------HLARRLFGWGKPSVRRLVTVGGR-------LLWGGTTLATLLRDG 161 (552)
T ss_pred cCCCccHHHHHHHHHhcCCCEEEeccHH-------HHHHHHhccCccchhheeccccc-------cccCCccHHHhcccC
Confidence 9999999999999999999999986521 0001111100 00 11111100 011222455543221
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHH
Q 008848 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (551)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l 419 (551)
.. .........++++++|+|||||||.||||+++|+++.+.+......++++++++.++..|+.|. ..+
T Consensus 162 ~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~-------~~~ 230 (552)
T PRK09274 162 AA----APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFAL-------FGP 230 (552)
T ss_pred cc----ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHh-------hhh
Confidence 11 1122233467899999999999999999999999999888877778899999999888777543 234
Q ss_pred HhCCEEEEecC------CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHH
Q 008848 420 LNGATLALYQG------SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (551)
Q Consensus 420 ~~G~~lvl~~~------~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~ 493 (551)
..|+++++.+. ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++||+++++++.+++.+
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~ 310 (552)
T PRK09274 231 ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRA 310 (552)
T ss_pred hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHH
Confidence 57888887642 346789999999999999999999999998765444567899999999999999999999998
Q ss_pred hcc-CCceeccccccccccccccCCcC---------CCCCcCccCCCCCCceEEEECC---------CCCccCCCC
Q 008848 494 KAW-YNAIIESCGGTELSSAYIQGSLL---------QPQAFGAFSTATMTAGLVILDE---------CGVPYVRTF 550 (551)
Q Consensus 494 ~~~-~~~l~n~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~g~~v~IlD~---------~g~~vp~Gv 550 (551)
.++ +++++|.||+||++..++..... ......++|+|++|++++|+|+ +++++|+|.
T Consensus 311 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~ 386 (552)
T PRK09274 311 MLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGE 386 (552)
T ss_pred HcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCC
Confidence 886 37999999999987643322111 1112347999999999999994 567888874
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=363.16 Aligned_cols=349 Identities=21% Similarity=0.232 Sum_probs=275.0
Q ss_pred chhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 008848 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (551)
Q Consensus 173 ~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~l 251 (551)
+|.+++.++.+. ++.+||++|+++.+. .+||.||+++++++|++|.+. +++|++|+++++|+++++++++
T Consensus 3 ~~~~~~~~~~~~-~~~~p~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNV-VEGRGGKTAFIDDIS--------SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHH-hcccCCceEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 566777776542 467999999998766 899999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc-eEEecCCCCCCCCCCCCCCc
Q 008848 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDL 330 (551)
Q Consensus 252 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~~~~~~~~~~~~~~~ 330 (551)
||+++|++++|+++.++.+++.++++.++++++++++... +.+.......+.. .++...... ....
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 140 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVGRPE-------AGEV 140 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH------HHHHHHHhcCCCccEEEEeCCCC-------cccc
Confidence 9999999999999999999999999999999999987532 1122222222221 122211100 1122
Q ss_pred chHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHH-hhhhcCCCCCCEEEEecCcccc
Q 008848 331 SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWV 409 (551)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~~ 409 (551)
.+.++...... ...+....++++++|+|||||||.||||+++|+++...+.. ....++++++|+++...|++|+
T Consensus 141 ~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 215 (508)
T TIGR02262 141 QLAELLATESE-----QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFA 215 (508)
T ss_pred cHHHHhhcCCC-----ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHH
Confidence 34444332211 11222345689999999999999999999999999876654 3455788999999999999999
Q ss_pred hhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhH
Q 008848 410 MGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDD 488 (551)
Q Consensus 410 ~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~ 488 (551)
.++ ..++.++..|+++++.++.+++..+++.|+++++|++.++|+++..++...........++|.+++||+++++++.
T Consensus 216 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~ 295 (508)
T TIGR02262 216 YGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVG 295 (508)
T ss_pred HHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHH
Confidence 887 4567789999999998766788999999999999999999999988876543333446789999999999999999
Q ss_pred HHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+.|.+.++ +++++.||+||++...+... ......+++|+|++|++++|+|++|+++|+|.
T Consensus 296 ~~~~~~~~-~~v~~~YG~tE~~~~~~~~~-~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~ 355 (508)
T TIGR02262 296 QRWQARFG-VDIVDGIGSTEMLHIFLSNL-PGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGE 355 (508)
T ss_pred HHHHHHhC-CchhhCccccccCceeecCC-ccCCCCCCcCCCCCCcEEEEECCCCCCCCCCC
Confidence 98888775 79999999999986443322 22334578999999999999999999999874
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=367.57 Aligned_cols=353 Identities=18% Similarity=0.161 Sum_probs=272.1
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+++.+.+ +.+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 ~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~ 101 (558)
T PRK12583 28 VARFPDREALVVRHQA------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNIN 101 (558)
T ss_pred HHHCCCCeEEEecCCC------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecC
Confidence 4789999999885431 3899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc-------------CCCceEEecCCCCCCCCCCCCCCcc
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------------APLKAIVLPAIGNDVGIPLREQDLS 331 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~vv~~~~~~~~~~~~~~~~~ 331 (551)
+.++.+++.+++++++++++++++..... +....+...... .+....++..... .......
T Consensus 102 ~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 175 (558)
T PRK12583 102 PAYRASELEYALGQSGVRWVICADAFKTS-DYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA-----PPPGFLA 175 (558)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEecccccc-chhHHHHHHhhhhccccccccccccCCcceEEEEecCC-----CCccccc
Confidence 99999999999999999999998753211 111111111000 1111111111110 0112234
Q ss_pred hHHhhccCCCCC-CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccch
Q 008848 332 WKDFLSSVDYHP-RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVM 410 (551)
Q Consensus 332 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 410 (551)
|+++........ ...........++++++++|||||||.||||+++|+++.+.+......++++++|++++..|++|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 255 (558)
T PRK12583 176 WHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF 255 (558)
T ss_pred hHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhh
Confidence 554433221100 0001111234568899999999999999999999999988887777778899999999999999988
Q ss_pred hh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHH
Q 008848 411 GP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDL 489 (551)
Q Consensus 411 ~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~ 489 (551)
+. +.++.++..|+++++.....++..+++.|+++++|++.++|+++..++........+++++|.+++||+++++++.+
T Consensus 256 g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~ 335 (558)
T PRK12583 256 GMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMR 335 (558)
T ss_pred hHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHH
Confidence 87 45778899999998876567888999999999999999999999888876544456789999999999999999999
Q ss_pred HHHHhccCCceeccccccccccccccCCcC--CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 490 WLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++.+.++...+++.||+||++.+++..... ......++|+|++++.++|+|++++++|.|.
T Consensus 336 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~ 398 (558)
T PRK12583 336 RVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGE 398 (558)
T ss_pred HHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCC
Confidence 998888766899999999998754433221 1234678999999999999999999999873
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=384.13 Aligned_cols=331 Identities=18% Similarity=0.207 Sum_probs=254.8
Q ss_pred cCCCCCC-ceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+ ++|+.+.+. +++||+||.++++++|++|++.+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 213 ~~~~~p~~~~a~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl 285 (718)
T PRK08043 213 AQYRYGAGKPCIEDVNF-------TPDSYRKLLKKTLFVGRILEKYSVEGERIGLMLPNATISAAVIFGASLRRRIPAMM 285 (718)
T ss_pred HHHHhCCCCcceEcCCC-------CcccHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCcHHHHHHHHHHHHcCCccccc
Confidence 3478897 688875321 28999999999999999997668999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHh--h-ccC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDF--L-SSV 339 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~--~-~~~ 339 (551)
++.++.+++++++++++++++++++++....+... ....... ..+++.... ....+.+. . ...
T Consensus 286 ~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~ 352 (718)
T PRK08043 286 NYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWH----LPEQLTQVRWVYLEDLK---------DDVTTADKLWIFAHL 352 (718)
T ss_pred ccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCC----hhhhhccccEEEhhhhh---------hhcchhHHHHHHHHH
Confidence 99999999999999999999999876432111000 0011111 122211100 00011110 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHH
Q 008848 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (551)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (551)
.. .........++|+++|+|||||||.||||+++|+++++.+.+....++++++|++++..|++|..+. ..++.+
T Consensus 353 ~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~ 428 (718)
T PRK08043 353 LM----PRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTP 428 (718)
T ss_pred hC----CccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHH
Confidence 00 0001123457899999999999999999999999999888777777889999999999999999887 457889
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCC
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (551)
++.|+++++.+...+...+++.++++++|++.++|+++..+.+.. ...++++||.+++||+++++++.+.+...++ +
T Consensus 429 l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g-~ 505 (718)
T PRK08043 429 LLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKFG-L 505 (718)
T ss_pred HHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHcC-C
Confidence 999999999875456677889999999999999999998876542 3456889999999999999999998888775 8
Q ss_pred ceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCC
Q 008848 499 AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG 543 (551)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g 543 (551)
+++|.||+||++..++...+ .....+++|+|+||++++|+|++|
T Consensus 506 ~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~~~i~d~~~ 549 (718)
T PRK08043 506 RILEGYGVTECAPVVSINVP-MAAKPGTVGRILPGMDARLLSVPG 549 (718)
T ss_pred CeecccCcccccceEEecCC-cccCCCCCCCcCCCCeeEEecCCC
Confidence 99999999999765443322 234568999999999999999764
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=364.51 Aligned_cols=343 Identities=19% Similarity=0.150 Sum_probs=274.4
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+.+.+. .+||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|++
T Consensus 21 a~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~ 92 (523)
T PRK08316 21 ARRYPDKTALVFGDR--------SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVN 92 (523)
T ss_pred HHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecc
Confidence 478899999998876 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
+.++.+++.++++.+++++++++.... ....+..+......+.+..... ..........++++......
T Consensus 93 ~~~~~~~i~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--- 161 (523)
T PRK08316 93 FMLTGEELAYILDHSGARAFLVDPALA------PTAEAALALLPVDTLILSLVLG--GREAPGGWLDFADWAEAGSV--- 161 (523)
T ss_pred cccCHHHHHHHHHhCCCCEEEEccchH------HHHHHHhhhcCccceeeeeccc--ccccccchhhHHHHHhcCCC---
Confidence 999999999999999999999987532 1112221111111111111100 00111223445544433221
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HHHHHHhCC
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGA 423 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~ 423 (551)
.........+++++|+|||||||.||+|+++|++++.........++++++++++...|+.|..+... ++.++..|+
T Consensus 162 --~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~ 239 (523)
T PRK08316 162 --AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA 239 (523)
T ss_pred --ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence 11223456789999999999999999999999999888777777788999999999999999888743 556788999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||++++.++.+.+++.+++.++++.
T Consensus 240 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 318 (523)
T PRK08316 240 TNVILD-APDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNC 318 (523)
T ss_pred eEEEec-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeee
Confidence 999976 4688999999999999999999999999988765556678899999999999999999999988877899999
Q ss_pred ccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||+||++...+..... .....+++|+|+++++++|+|++|+++|.|.
T Consensus 319 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~ 366 (523)
T PRK08316 319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGE 366 (523)
T ss_pred ecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCC
Confidence 9999988654433222 2244678999999999999999999999874
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=375.50 Aligned_cols=344 Identities=17% Similarity=0.183 Sum_probs=251.3
Q ss_pred cCCCCCCceEEEEecC-CCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
.++++|+++|+.+... .+..+.++.+||+||.++++++|++|.+. +++||+|+|+++|++||++++|||+++|+++||
T Consensus 51 ~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vp 130 (660)
T PLN02430 51 SVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVP 130 (660)
T ss_pred HHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEE
Confidence 3478999999976421 11123456789999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc--eEEecCCCCCCC---CCCCCCCcchHHhhc
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVG---IPLREQDLSWKDFLS 337 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~vv~~~~~~~~---~~~~~~~~~~~~~~~ 337 (551)
+++.++++++.+++++++++++++++... ...........+.. ++++........ ........+|++++.
T Consensus 131 l~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (660)
T PLN02430 131 LYDTLGPGAVDYIVDHAEIDFVFVQDKKI-----KELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLH 205 (660)
T ss_pred eccCCCHHHHHHHHhccCCCEEEECHHHH-----HHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHH
Confidence 99999999999999999999999986421 00111111111111 222211110000 000112345777665
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh-----cCCCCCCEEEEecCcccchhh
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-----IDLKVGDVYCWPTNLGWVMGP 412 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~-----~~~~~~d~~l~~~~~~~~~~~ 412 (551)
..... ........++|+++|+|||||||.||||+++|++++..+...... .+++++|++++++|++|..+.
T Consensus 206 ~~~~~----~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~ 281 (660)
T PLN02430 206 MGKEN----PSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDR 281 (660)
T ss_pred hhccC----CCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHH
Confidence 43320 111123357899999999999999999999999998776554221 256789999999999999887
Q ss_pred HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc----------------------------
Q 008848 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC---------------------------- 464 (551)
Q Consensus 413 ~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~---------------------------- 464 (551)
...+.++..|++++++.+ ++..+++.|+++++|++.++|++++.+.+...
T Consensus 282 ~~~~~~l~~G~~i~~~~~--~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (660)
T PLN02430 282 MIEEYFFRKGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRG 359 (660)
T ss_pred HHHHHHHHcCCEEEEeCC--ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcC
Confidence 655667899999988753 56789999999999999999999987764200
Q ss_pred ------cCCCC----------C-CCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCcc
Q 008848 465 ------LEGLD----------W-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF 527 (551)
Q Consensus 465 ------~~~~~----------l-~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~i 527 (551)
....+ + ++||.+++||+++++++.++++ .++.+.++++||+||+++.++...+......+++
T Consensus 360 ~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsv 438 (660)
T PLN02430 360 YSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTV 438 (660)
T ss_pred CCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeeccccCCCCCCc
Confidence 00000 1 5899999999999999866554 4444689999999999865444333333356899
Q ss_pred CCCCCCceEEEEC
Q 008848 528 STATMTAGLVILD 540 (551)
Q Consensus 528 G~p~~g~~v~IlD 540 (551)
|+|.++++++|+|
T Consensus 439 G~p~~~~evki~d 451 (660)
T PLN02430 439 GAPAVYNELRLEE 451 (660)
T ss_pred cCCCCceEEEEEE
Confidence 9999999999986
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=366.27 Aligned_cols=338 Identities=20% Similarity=0.153 Sum_probs=264.5
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+.+.+. ++||+||.++++++|+.|++. +++||+|+|+++|+++++++++||+++|++++|++
T Consensus 17 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 88 (528)
T PRK07470 17 ARRFPDRIALVWGDR--------SWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTN 88 (528)
T ss_pred HHHCCCceEEEECCc--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecC
Confidence 468999999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
+.++.+++.+++++++++++++++.+.. ....+.+.......++..... .....++++......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--- 152 (528)
T PRK07470 89 FRQTPDEVAYLAEASGARAMICHADFPE------HAAAVRAASPDLTHVVAIGGA-------RAGLDYEALVARHLG--- 152 (528)
T ss_pred ccCCHHHHHHHHHhcCceEEEEcchhHH------HHHHHHhhCCcCceEEEeCCC-------cccccHHHHHhcCCC---
Confidence 9999999999999999999999875421 111222111111111111110 012345555443211
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh--cCCCCCCEEEEecCcccchhhHHHHHHHHhC
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (551)
.........++++++|+|||||||.||||+++|+++...+...... .+..++|+++...|++|+.++..++ .++.|
T Consensus 153 -~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g 230 (528)
T PRK07470 153 -ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARG 230 (528)
T ss_pred -CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcC
Confidence 1112234567899999999999999999999999987554432222 2567889999999999998876554 67888
Q ss_pred CEEEEecC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 423 ATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 423 ~~lvl~~~-~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
++.++++. .+++..+++.|+++++|++.++|++++.+.+.......+++++|.+++||+++++.+.+++...++ .+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~ 309 (528)
T PRK07470 231 AATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLG-KVLV 309 (528)
T ss_pred ceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhC-cHHH
Confidence 88888763 457889999999999999999999999998765545567889999999999999999888877775 6899
Q ss_pred ccccccccccccccCCcC-------CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLL-------QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-------~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||+++.++..... .....+++|+|++|++++|+|++|+++|.|.
T Consensus 310 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~ 365 (528)
T PRK07470 310 QYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGE 365 (528)
T ss_pred HhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCC
Confidence 999999987654432211 1234578999999999999999999999874
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=364.13 Aligned_cols=341 Identities=16% Similarity=0.140 Sum_probs=265.7
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++.+|+++|+++.+. ++||+||+++++++|.+|.+. +++|++|+++++|++++++++|||+++|+++++++
T Consensus 33 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 104 (527)
T TIGR02275 33 AARYPDAIAIICGNR--------QWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLAL 104 (527)
T ss_pred HHHCCCceEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccc
Confidence 478999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+.++.+++.++++++++++++++..... .........+....+. ..+++.... . ..............
T Consensus 105 ~~~~~~~~~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~-- 173 (527)
T TIGR02275 105 FSHRKSELTAYAQQIEPALYIIDRAHSL-FDYDAFARQLQSKLPTLRNIIVAGQT-R-------VEAELFLWLESPAE-- 173 (527)
T ss_pred cccCHHHHHHHHHhcCCcEEEEcCcccc-cchHHHHHHHHhhCCcceEEEEecCC-C-------CcchhhHHhhCcCc--
Confidence 9999999999999999999999865310 0000011111111221 112221100 0 00011111111111
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH--HHHHHHHh
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~~ 421 (551)
........++++++|+|||||||.||||+++|+++...+......+.++.+|++++.+|++|..++. .++.++..
T Consensus 174 ---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~ 250 (527)
T TIGR02275 174 ---PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA 250 (527)
T ss_pred ---cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhc
Confidence 1112244678999999999999999999999999988887777778899999999999999988764 47888999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++++.+ .+++..+++.++++++|++.++|++++.|.+.......+++++|.+++||+++++++.+++.+.++ .+++
T Consensus 251 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~ 328 (527)
T TIGR02275 251 GGCVVLAP-DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFG-CQLQ 328 (527)
T ss_pred CCeEEECC-CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhC-CeEE
Confidence 99998865 568889999999999999999999999988765444566889999999999999999999988775 7999
Q ss_pred ccccccccccccccCCcCCCCCcCccCCCC-CCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~g~~v~IlD~~g~~vp~Gv 550 (551)
+.||+||++++............+++|+|+ ++.+++|+|++|+++|+|.
T Consensus 329 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~ 378 (527)
T TIGR02275 329 QVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGE 378 (527)
T ss_pred eeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCC
Confidence 999999976543221111223456899999 5899999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=367.48 Aligned_cols=349 Identities=20% Similarity=0.181 Sum_probs=265.2
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+++.+. .+||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 41 ~~~~~p~~~a~~~~~~--------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l 112 (573)
T PRK05605 41 AVARFGDRPALDFFGA--------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEH 112 (573)
T ss_pred HHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence 3478999999998766 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceE-EecCCCCCC--------------------C
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI-VLPAIGNDV--------------------G 322 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-vv~~~~~~~--------------------~ 322 (551)
+|.++.+++.+++++++++++|+++.... ....+........+ .+....... .
T Consensus 113 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (573)
T PRK05605 113 NPLYTAHELEHPFEDHGARVAIVWDKVAP------TVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL 186 (573)
T ss_pred CcCCCHHHHHHHHhccCCcEEEechhhHH------HHHhhhhccccceeEeeeccccccccccccccccccccccccccc
Confidence 99999999999999999999999775321 11111111111111 111000000 0
Q ss_pred CCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC-C-CCCCEE
Q 008848 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-L-KVGDVY 400 (551)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~-~~~d~~ 400 (551)
.....+...|+++....... ...........++++++|+|||||||.||||+++|+++...+......+. + ..++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 265 (573)
T PRK05605 187 TGPAPGTVPWETLVDAAIGG-DGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERV 265 (573)
T ss_pred ccCCCcceeHHHHhhccccc-cccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEE
Confidence 00011334566554432210 00001122345789999999999999999999999998876654433222 2 346899
Q ss_pred EEecCcccchhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEee
Q 008848 401 CWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (551)
Q Consensus 401 l~~~~~~~~~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~g 479 (551)
++..|+.|..+. ..++.++..|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|
T Consensus 266 ~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~g 344 (573)
T PRK05605 266 LAALPMFHAYGLTLCLTLAVSIGGELVLLP-APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSG 344 (573)
T ss_pred EEecChHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEEC
Confidence 999999988876 44667899999999876 4688999999999999999999999999988655555678899999999
Q ss_pred cCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCC--CCccCCCC
Q 008848 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC--GVPYVRTF 550 (551)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~--g~~vp~Gv 550 (551)
|+++++++.+++.+.++ .++++.||+||+++.+...........+++|+|++|++++|+|++ ++++|.|.
T Consensus 345 g~~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~ 416 (573)
T PRK05605 345 AMALPVSTVELWEKLTG-GLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE 416 (573)
T ss_pred CCcCCHHHHHHHHHHhC-CCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCC
Confidence 99999999888877664 789999999999865544333233456799999999999999976 58888774
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=364.21 Aligned_cols=340 Identities=19% Similarity=0.157 Sum_probs=261.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
.++.+|+++|+.+...+ +.+||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 37 ~a~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 110 (546)
T PLN02330 37 DAELYADKVAFVEAVTG------KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGA 110 (546)
T ss_pred hhhcCCCccEEEecCCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccC
Confidence 34789999999874221 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
++.++.+++.+++++++++++++++..... . +......+++.... ......|++++.....
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~-~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~-- 171 (546)
T PLN02330 111 NPTALESEIKKQAEAAGAKLIVTNDTNYGK---------V-KGLGLPVIVLGEEK-------IEGAVNWKELLEAADR-- 171 (546)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEccchhhh---------H-hhcCCcEEEecCCC-------CCCcccHHHHHhhccc--
Confidence 999999999999999999999998764311 1 11112233332111 1123456666544321
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC--CCCCCEEEEecCcccchhhH-HHHHHHH
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPV-ILFSSFL 420 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~-~~~~~l~ 420 (551)
...........++++++|+|||||||.||||+++|+++...+......+. ....++++...|++|..+.. .++.++.
T Consensus 172 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~ 251 (546)
T PLN02330 172 AGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLR 251 (546)
T ss_pred cCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhh
Confidence 00111122344689999999999999999999999998876543221111 22346788889999988874 4678899
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCC--CccEEEeecCCCChhhHHHHHHhccCC
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT--KIRSFASTGETSNVDDDLWLSSKAWYN 498 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~--sLr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (551)
.|+++++.+ .+++..+++.++++++|++.++|+++..|.+.......+++ ++|.+++||+++++++.+++.+.++++
T Consensus 252 ~g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~ 330 (546)
T PLN02330 252 NKGKVVVMS-RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGV 330 (546)
T ss_pred cCCEEEEec-ccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCC
Confidence 999999876 57889999999999999999999999999876544444444 478999999999999999999988778
Q ss_pred ceeccccccccccccccCC-cC---CCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 499 AIIESCGGTELSSAYIQGS-LL---QPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~-~~---~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
++++.||+||++....... +. ......++|+|++|++++|+| ++++++|+|.
T Consensus 331 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~ 387 (546)
T PLN02330 331 QVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNT 387 (546)
T ss_pred eEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCC
Confidence 9999999999875433221 11 112346899999999999999 5789999874
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=363.81 Aligned_cols=343 Identities=20% Similarity=0.213 Sum_probs=266.1
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++||++|+++.++ +++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 33 ~~~~pd~~a~~~~~~-------~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 105 (547)
T PRK06087 33 ARAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLL 105 (547)
T ss_pred HHHCCCceEEEcCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccc
Confidence 467999999997652 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
|.++.+++.+++++++++++++++..... ...+....+...... .++.+..... ......+.++......
T Consensus 106 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~- 177 (547)
T PRK06087 106 PSWREAELVWVLNKCQAKMFFAPTLFKQT-RPVDLILPLQNQLPQLQQIVGVDKLAP------ATSSLSLSQIIADYEP- 177 (547)
T ss_pred hhcCHHHHHHHHHhcCCeEEEEecccccc-cHHHHHHHHHhhCCCCcEEEEeCCcCC------CcCccCHHHHhccCCc-
Confidence 99999999999999999999998643110 111111122222221 2222221110 0122345555433221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH-HHHHHHHh
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLN 421 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~ 421 (551)
. ......+++++++|+|||||||.||||+++|++++.........+++++++++++..|++|..+++ .++.+++.
T Consensus 178 ---~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~ 253 (547)
T PRK06087 178 ---L-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLI 253 (547)
T ss_pred ---c-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhc
Confidence 0 112234578999999999999999999999999988777766777889999999999999998874 57788999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++++.+ ..++..+++.|+++++|++..+|+.+..+++.......+++++|.+++||+++++++.+.+... +++++
T Consensus 254 g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~ 330 (547)
T PRK06087 254 GARSVLLD-IFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLL 330 (547)
T ss_pred CCEEEecC-CCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEE
Confidence 99999976 5688999999999999999988877776666544445568899999999999999998877654 58999
Q ss_pred ccccccccccccccCCcCC-CCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+.||+||++.......... ....+++|+|++|+.++|+|++++++|+|.
T Consensus 331 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~ 380 (547)
T PRK06087 331 SVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGC 380 (547)
T ss_pred EEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCC
Confidence 9999999876543322111 123457899999999999999999999874
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=359.26 Aligned_cols=331 Identities=17% Similarity=0.128 Sum_probs=265.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+++.+. .+||.||.++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 11 ~~~~~~~~~a~~~~~~--------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l 82 (497)
T PRK06145 11 HARRTPDRAALVYRDQ--------EISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPI 82 (497)
T ss_pred HHHHCCCceEEEECCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEec
Confidence 3478999999998776 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
++.++.+++.+++++++++++++++..... .. .....+.+..... ..+..+.....
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~~-~~~~~~~~~~~~~----------~~~~~~~~~~~--- 138 (497)
T PRK06145 83 NYRLAADEVAYILGDAGAKLLLVDEEFDAI----------VA-LETPKIVIDAAAQ----------ADSRRLAQGGL--- 138 (497)
T ss_pred ccccCHHHHHHHHHhcCCcEEEEccchhhh----------hh-cccceEEecCccc----------chhHHHhccCC---
Confidence 999999999999999999999998753210 00 0011122211000 01111111000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH-HHHHHHHhC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNG 422 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G 422 (551)
.........++++++++|||||||.||||+++|+++..........+++..+++++...|++|..++. ..+.+++.|
T Consensus 139 --~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g 216 (497)
T PRK06145 139 --EIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVG 216 (497)
T ss_pred --CCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhcc
Confidence 00111234568999999999999999999999999887666666677889999999999999987773 456789999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceec
Q 008848 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (551)
Q Consensus 423 ~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (551)
+++++.+ .+++..+++.++++++|++.++|++++.++........+++++|.+++|||++++++++++.+.+++.++++
T Consensus 217 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~ 295 (497)
T PRK06145 217 GTLRIHR-EFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYID 295 (497)
T ss_pred CEEEECC-cCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEE
Confidence 9998876 578899999999999999999999999998765545566889999999999999999999998887789999
Q ss_pred cccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 503 SCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 503 ~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.||+||++..++..... .....+++|+|+++++++|+|++++++|+|.
T Consensus 296 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~ 344 (497)
T PRK06145 296 AYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNM 344 (497)
T ss_pred eecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCC
Confidence 99999998654332211 2234578999999999999999999999874
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=364.22 Aligned_cols=346 Identities=16% Similarity=0.174 Sum_probs=265.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
.++++||++|++.... +..+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 19 ~a~~~~~~~~~~~~~~----~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l 94 (542)
T PRK06018 19 AARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTV 94 (542)
T ss_pred HHHhCCCceEEEeecc----CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeecc
Confidence 3478999999985322 2345899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-c-eEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-K-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
+|.++.+++..+++++++++++++..+. +.+.++....+. . .+++... ........++...|.+++.....
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (542)
T PRK06018 95 NPRLFPEQIAWIINHAEDRVVITDLTFV------PILEKIADKLPSVERYVVLTDA-AHMPQTTLKNAVAYEEWIAEADG 167 (542)
T ss_pred ccccCHHHHHHHHhccCCCEEEEccccH------HHHHHHHhhCCCccEEEEeccc-ccccccCccccccHHHHhccCCc
Confidence 9999999999999999999999987542 222222222221 1 2222211 11010111133456665543321
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH-HH-HHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RC-TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~-~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l 419 (551)
........++++++|+|||||||.||||+++|++.+ .. .......++++.+|+++...|++|+.+....+.++
T Consensus 168 -----~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~ 242 (542)
T PRK06018 168 -----DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAP 242 (542)
T ss_pred -----ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhh
Confidence 111233456789999999999999999999999743 22 22334457788999999999999988876667889
Q ss_pred HhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 420 ~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
..|+++++....+++..+++.++++++|++.++|+++..|.+.......++++||.+++|||++++++.+++++ + +++
T Consensus 243 ~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~ 320 (542)
T PRK06018 243 SMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M-GVE 320 (542)
T ss_pred hcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-CCC
Confidence 99999998655667889999999999999999999999998765444556889999999999999999999987 5 489
Q ss_pred eeccccccccccccccCCcCC----------CCCcCccCCCCCCceEEEECCCCCccCC
Q 008848 500 IIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYVR 548 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~g~~v~IlD~~g~~vp~ 548 (551)
+++.||+||++.+.+...... .....++|+|.+|++++|+|++|+++|.
T Consensus 321 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~ 379 (542)
T PRK06018 321 VRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPW 379 (542)
T ss_pred eEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCC
Confidence 999999999986543321110 0123579999999999999999999886
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=373.53 Aligned_cols=335 Identities=19% Similarity=0.160 Sum_probs=252.5
Q ss_pred CCCCCCceEEEEecCCC-CCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec-
Q 008848 186 RRKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI- 263 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl- 263 (551)
++++|+++|+++.+..+ ..+.++.+||+||.++++++|++|.+.+++||+|+++++|++++++++|||+++|++++|+
T Consensus 44 ~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~ 123 (612)
T PRK12476 44 IANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQVAGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLF 123 (612)
T ss_pred HHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCChhHHHHHHHHHHcCceeEecC
Confidence 36789999999754210 1234568999999999999999997669999999999999999999999999999999999
Q ss_pred CCCCC--HHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC----CceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 264 ADSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 264 ~~~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~----~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
++.++ .+++.+++++++++++|+++... +....+..... ..++.+.. +..
T Consensus 124 ~~~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~------------------~~~ 179 (612)
T PRK12476 124 APELPGHAERLDTALRDAEPTVVLTTTAAA------EAVEGFLRNLPRLRRPRVIAIDA------------------IPD 179 (612)
T ss_pred CCCcchhHHHHHHHHHhCCCCEEEEcHHHH------HHHHHHHhhcccccCceEEEecc------------------ccc
Confidence 68877 89999999999999999987532 11111111111 11222211 000
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC-CCCCCEEEEecCcccchhhHHHH
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGPVILF 416 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~~~~~ 416 (551)
... .........++++++|+|||||||.||||+++|+++++.+......++ +.+++++++++|++|+.++..++
T Consensus 180 ~~~-----~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~ 254 (612)
T PRK12476 180 SAG-----ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIG 254 (612)
T ss_pred ccc-----ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHH
Confidence 000 011112345689999999999999999999999999877666555667 78899999999999999987777
Q ss_pred HHHHhCCEEEEecC-CC--ChhhHHHHHH--HcCCcEEEecHHHHHHHHhcCc----cCCCCCCCccEEEeecCCCChhh
Q 008848 417 SSFLNGATLALYQG-SP--LERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDD 487 (551)
Q Consensus 417 ~~l~~G~~lvl~~~-~~--~~~~~~~~i~--~~~vt~l~~~Ps~l~~l~~~~~----~~~~~l~sLr~i~~gGe~l~~~~ 487 (551)
.+++.|++.++... .+ ++..+++.++ ++++|++..+|+++..++.... ....+++++| +++||+++++++
T Consensus 255 ~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~ 333 (612)
T PRK12476 255 FPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDA 333 (612)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHH
Confidence 77777888777653 22 7788999995 5899999999999887765321 1244688999 999999999999
Q ss_pred HHHHHHhcc-----CCceeccccccccccccccCCcCCC--------------------------CCcCccCCCCCCceE
Q 008848 488 DLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP--------------------------QAFGAFSTATMTAGL 536 (551)
Q Consensus 488 ~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~p~~g~~v 536 (551)
.+++.+.++ ..+++|.||+||++..++...+... ...+++|+|++|+++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v 413 (612)
T PRK12476 334 VTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWA 413 (612)
T ss_pred HHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEE
Confidence 998887762 2359999999998754332211100 013589999999999
Q ss_pred EEECCC-CCccCCCC
Q 008848 537 VILDEC-GVPYVRTF 550 (551)
Q Consensus 537 ~IlD~~-g~~vp~Gv 550 (551)
+|+|++ |+++|+|.
T Consensus 414 ~ivd~~~g~~~~~g~ 428 (612)
T PRK12476 414 VIVDPDTGAELPDGE 428 (612)
T ss_pred EEEeCCCCcCCCCCC
Confidence 999988 99999885
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=369.37 Aligned_cols=328 Identities=16% Similarity=0.073 Sum_probs=245.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+++++|+++|+++.+. +.++++||+||+++++++|++|.++ ++||+|+|+++|++++++++|||+++|++++ ++
T Consensus 11 ~~~~~~~~~a~~~~~~----~~~~~~ty~el~~~~~~lA~~L~~~-~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~-~~ 84 (525)
T PRK05851 11 AMTASGRDLVVLDRES----GLWRRHPWPEVHGRAENVAARLLDR-DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS-IL 84 (525)
T ss_pred HhcCCCCceEEeCCCC----CcceeecHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc-CC
Confidence 3478899999998653 3467999999999999999999987 9999999999999999999999999999865 44
Q ss_pred CC--------CCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhh
Q 008848 265 DS--------FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336 (551)
Q Consensus 265 ~~--------~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~ 336 (551)
|. ...+++.+++++++++++|+++... ..+..... .+ .+. .+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~-~~-~~~---------------~~~~~~ 138 (525)
T PRK05851 85 PGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAVDS-SV-TVH---------------DLATAA 138 (525)
T ss_pred CCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHhhc-cc-ccc---------------cccccc
Confidence 42 2345666789999999999986531 11111000 00 000 000000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCC-CCCEEEEecCcccchhhHHH
Q 008848 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK-VGDVYCWPTNLGWVMGPVIL 415 (551)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~d~~l~~~~~~~~~~~~~~ 415 (551)
.... .. ......+++++||+|||||||.||||+++|+++++.+.+....++++ ++|+++++.|++|+++++.+
T Consensus 139 ~~~~----~~--~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 212 (525)
T PRK05851 139 HTNR----SA--SLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFL 212 (525)
T ss_pred cccc----cc--cCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHH
Confidence 0000 00 01123568999999999999999999999999998888777778888 89999999999999999888
Q ss_pred HHHHHhCCEEEEecC-CC--ChhhHHHHHHHcCCcEEEecHHHHHHHHhcC-ccCCCCCCCccEEEeecCCCChhhHHHH
Q 008848 416 FSSFLNGATLALYQG-SP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-CLEGLDWTKIRSFASTGETSNVDDDLWL 491 (551)
Q Consensus 416 ~~~l~~G~~lvl~~~-~~--~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~-~~~~~~l~sLr~i~~gGe~l~~~~~~~~ 491 (551)
+.+++.|+++++.+. .+ ++..+++.++++++|++..+|.++..+.+.. .....++++||.+++||+++++++.+++
T Consensus 213 ~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~ 292 (525)
T PRK05851 213 LTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERF 292 (525)
T ss_pred HHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHH
Confidence 999999999999763 22 5678999999999998866555555554322 1234567899999999999999998888
Q ss_pred HHh---cc--CCceeccccccccccccccCCcC--------------CCCCcCccCCCCCCceEEEECCCC-CccCCCC
Q 008848 492 SSK---AW--YNAIIESCGGTELSSAYIQGSLL--------------QPQAFGAFSTATMTAGLVILDECG-VPYVRTF 550 (551)
Q Consensus 492 ~~~---~~--~~~l~n~YG~TE~~~~~~~~~~~--------------~~~~~~~iG~p~~g~~v~IlD~~g-~~vp~Gv 550 (551)
.+. ++ ..+++|.||+||++..++...+. ...+.+++|+|++|++++|+|+++ .++|.|.
T Consensus 293 ~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~ 371 (525)
T PRK05851 293 ATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGRE 371 (525)
T ss_pred HHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCC
Confidence 764 22 23599999999997654432211 012346899999999999999876 4678764
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=362.90 Aligned_cols=336 Identities=17% Similarity=0.145 Sum_probs=264.4
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++.+||++|+++.+. .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 30 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl 101 (542)
T PRK06155 30 QAERYPDRPLLVFGGT--------RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPI 101 (542)
T ss_pred HHHHCCCCeEEEeCCc--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEe
Confidence 4478999999998776 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcC-C-CceEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~-~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
++.++.+++..+++++++++++++..... ......... . ...+.+..... .. ....|.........
T Consensus 102 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~ 169 (542)
T PRK06155 102 NTALRGPQLEHILRNSGARLLVVEAALLA------ALEAADPGDLPLPAVWLLDAPAS---VS---VPAGWSTAPLPPLD 169 (542)
T ss_pred ccccCHHHHHHHHHhcCceEEEEChhhHH------HHHHhcccccCcceEEEecCccc---cc---cccccchhhhcccC
Confidence 99999999999999999999999875321 111111111 1 12222221100 00 00111110000000
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
.........++++++|+|||||||.||||+++|+++.+........+++++++++++..|++|..++..++.+++.
T Consensus 170 ----~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~ 245 (542)
T PRK06155 170 ----APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLA 245 (542)
T ss_pred ----CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHc
Confidence 0111223456899999999999999999999999998877766777889999999999999999998888999999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.........+++|.++.|| +++++..++++.++ ++++
T Consensus 246 G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~-~~v~ 321 (542)
T PRK06155 246 GATYVLEP-RFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERFG-VDLL 321 (542)
T ss_pred CceEEeeC-CCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHcC-CCEE
Confidence 99999876 56889999999999999999999999999876544445577899887666 46888888887775 7899
Q ss_pred ccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||++..+.... .....+++|+|++|++++|+|++|+++|.|.
T Consensus 322 ~~YG~tE~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~ 368 (542)
T PRK06155 322 DGYGSTETNFVIAVTH--GSQRPGSMGRLAPGFEARVVDEHDQELPDGE 368 (542)
T ss_pred eeecccccCccccCCC--CCCCCCCcCccCCCceEEEECCCCCCCCCCC
Confidence 9999999986544321 2345678999999999999999999999874
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=373.10 Aligned_cols=336 Identities=15% Similarity=0.127 Sum_probs=255.2
Q ss_pred CCCCCCceEEEEecCC-CCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec-
Q 008848 186 RRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI- 263 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl- 263 (551)
++.+|+++|+++.+.. ...+..+.+||+||+++++++|++|.+.+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~ 110 (631)
T PRK07769 31 AKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQVTKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLF 110 (631)
T ss_pred HHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeC
Confidence 3678999999975421 01233468999999999999999997669999999999999999999999999999999999
Q ss_pred CCCCC--HHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC----CceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 264 ADSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 264 ~~~~~--~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~----~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
++..+ .+++.+++++++++++|+++... +.........+ ..++.+... .+..
T Consensus 111 ~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~- 168 (631)
T PRK07769 111 DPAEPGHVGRLHAVLDDCTPSAILTTTDSA------EGVRKFFRARPAKERPRVIAVDAV---------------PDEV- 168 (631)
T ss_pred CCCccchHHHHHHHHHhCCCCEEEEChHHH------HHHHHHHhhccccccceEEEcccc---------------cccc-
Confidence 56665 68999999999999999987532 11111111111 111111100 0000
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHH
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (551)
.. ........++++++|+|||||||+||||+++|+++...+......+++.++++++++.|++|++++..++.
T Consensus 169 --~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~ 241 (631)
T PRK07769 169 --GA-----TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLL 241 (631)
T ss_pred --cc-----ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHH
Confidence 00 01112345689999999999999999999999999888777777788899999999999999999987788
Q ss_pred HHHhCCEEEEecC-CC--ChhhHHHHHHHcCC---cEEEecHHHHHHHHhcC---c--cCCCCCCCccEEEeecCCCChh
Q 008848 418 SFLNGATLALYQG-SP--LERSFGKFVQDAGV---TVLGTVPSLVKAWRNTN---C--LEGLDWTKIRSFASTGETSNVD 486 (551)
Q Consensus 418 ~l~~G~~lvl~~~-~~--~~~~~~~~i~~~~v---t~l~~~Ps~l~~l~~~~---~--~~~~~l~sLr~i~~gGe~l~~~ 486 (551)
+++.|+++++++. .+ ++..+++.++++++ +++..+|+++..+.... . ....++++||.+++||++++++
T Consensus 242 ~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~ 321 (631)
T PRK07769 242 PALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPA 321 (631)
T ss_pred HHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHH
Confidence 8899999998853 23 78889999999986 78999999887665421 1 1145789999999999999999
Q ss_pred hHHHHHHhcc-----CCceeccccccccccccccCCcCCC--------------------------CCcCccCCCCCCce
Q 008848 487 DDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP--------------------------QAFGAFSTATMTAG 535 (551)
Q Consensus 487 ~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~p~~g~~ 535 (551)
+.+++.+.++ ...++|.||+||++..++....... ...+++|+|+++++
T Consensus 322 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~ 401 (631)
T PRK07769 322 SMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEW 401 (631)
T ss_pred HHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcE
Confidence 9999888763 2359999999998764433211100 01257999999999
Q ss_pred EEEEC-CCCCccCCCC
Q 008848 536 LVILD-ECGVPYVRTF 550 (551)
Q Consensus 536 v~IlD-~~g~~vp~Gv 550 (551)
++|+| ++|+++|.|.
T Consensus 402 ~~ivd~~~g~~~~~ge 417 (631)
T PRK07769 402 AVIVDPETASELPDGQ 417 (631)
T ss_pred EEEEcCCCCcCCCCCC
Confidence 99999 5799999885
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=363.78 Aligned_cols=347 Identities=19% Similarity=0.179 Sum_probs=260.9
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
+++++|+++|+++.+. .+||+||+++++++|++|.+ . +++||+|+++++|++++++++|||+++|++++|
T Consensus 33 ~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~ 104 (562)
T PRK12492 33 SCKKFADRPAFSNLGV--------TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVN 104 (562)
T ss_pred HHHhCCCCeeEecCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEec
Confidence 3478999999987665 89999999999999999987 5 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEE---------------ecC----CCCCCCC
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV---------------LPA----IGNDVGI 323 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------v~~----~~~~~~~ 323 (551)
++|.++.+++.+++++++++++++++.+... ...+.......... ... .......
T Consensus 105 ~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
T PRK12492 105 TNPLYTAREMRHQFKDSGARALVYLNMFGKL------VQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPA 178 (562)
T ss_pred cCccCCHHHHHHHHhccCceEEEeccccchH------HHHhhhccCceEEEeechhhccccccchhcccccccccccccc
Confidence 9999999999999999999999997643211 11111100000000 000 0000000
Q ss_pred CCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC---------C
Q 008848 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID---------L 394 (551)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---------~ 394 (551)
...+....|+++...... ....+.....+++++|+|||||||.||||+++|+++...+......+. +
T Consensus 179 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (562)
T PRK12492 179 YHLPQAVPFKQALRQGRG----LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLM 254 (562)
T ss_pred cCCcccccHHHHHhccCC----CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccc
Confidence 001122345555433211 111123345689999999999999999999999999776654433322 2
Q ss_pred CCC-CEEEEecCcccchhhH-HHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCC
Q 008848 395 KVG-DVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (551)
Q Consensus 395 ~~~-d~~l~~~~~~~~~~~~-~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~s 472 (551)
..+ ++++...|++|..+.. .++..+..|++.++.....++..+++.|+++++|++..+|+++..|.+.......++++
T Consensus 255 ~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~ 334 (562)
T PRK12492 255 KEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSA 334 (562)
T ss_pred cCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccc
Confidence 333 5678889999988873 45667788888887764457888999999999999999999999998765555567889
Q ss_pred ccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 473 Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+|.+++||+++++++.+++.+.++ +++++.||+||++..++..........+++|+|++|++++|+|++|+++|+|.
T Consensus 335 lr~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~ 411 (562)
T PRK12492 335 LKLTNSGGTALVKATAERWEQLTG-CTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGE 411 (562)
T ss_pred eeEEEeccccCCHHHHHHHHHHhC-CceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCC
Confidence 999999999999999988887664 89999999999876544333222334578999999999999999999999874
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=360.57 Aligned_cols=310 Identities=69% Similarity=1.162 Sum_probs=229.5
Q ss_pred cCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCC
Q 008848 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (551)
Q Consensus 240 ~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~ 319 (551)
++|++|+++++|||+++|++++|+++.++.+++.+++++++++++|+++.....++..+...++......+.+++...+.
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 68999999999999999999999999999999999999999999999875422222222333332222223333321111
Q ss_pred CCCCCCCCCCcchHHhhccCCCC--CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCC
Q 008848 320 DVGIPLREQDLSWKDFLSSVDYH--PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (551)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (551)
...........+|+++....... .......+....++++++|+|||||||.||||+++|++++.........++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 00000001233566665321100 0000111122356899999999999999999999999987766555556788899
Q ss_pred CEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccE
Q 008848 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475 (551)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~ 475 (551)
|++++.+|++|+.+.+.++.+|+.|+++++.++.+++..+++.|+++++|++.++|+++..|++... ....++++||.
T Consensus 161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~ 240 (499)
T PLN03051 161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240 (499)
T ss_pred CEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheE
Confidence 9999999999999987788899999999998755678899999999999999999999999887542 33457889999
Q ss_pred EEeecCCCChhhHHHHHHhcc-CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCC
Q 008848 476 FASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRT 549 (551)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~G 549 (551)
+++|||++++++.+++++..+ +++++|.||+||++..++......+...+++|+|++|++++|+|++|+++|+|
T Consensus 241 i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g 315 (499)
T PLN03051 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDD 315 (499)
T ss_pred EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCC
Confidence 999999999998887766332 26799999999986533332222334567899999999999999999999987
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=361.41 Aligned_cols=322 Identities=16% Similarity=0.127 Sum_probs=255.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++.+||++|+++.+. .+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 44 ~a~~~p~~~a~~~~~~--------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl 115 (516)
T PRK13383 44 TAARWPGRTAIIDDDG--------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPI 115 (516)
T ss_pred HHHHCCCCcEEEeCCC--------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEc
Confidence 4468999999998665 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
++.++.+++.+++++++++++++++.+.. .+.. .......+... . ..... .
T Consensus 116 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~-~~~~~~~~~~~-----------~---~~~~~-~---- 166 (516)
T PRK13383 116 STEFRSDALAAALRAHHISTVVADNEFAE---------RIAG-ADDAVAVIDPA-----------T---AGAEE-S---- 166 (516)
T ss_pred CccCCHHHHHHHHhcCCCCEEEEchhHHH---------HHHh-hhcceEEeccc-----------h---hhhhc-C----
Confidence 99999999999999999999999875421 1111 11112222100 0 00000 0
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH--HHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC--TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
...+...++.++|+|||||||+||||+++|+..... .......+++.++|+++...|++|..+...++.++..
T Consensus 167 -----~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~ 241 (516)
T PRK13383 167 -----GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIAL 241 (516)
T ss_pred -----CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhc
Confidence 000112356689999999999999999999743211 1222345678899999999999999998878889999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc--CCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
|+++++.. .+++..+++.++++++|.+.++|+++..|.+.... ...+++++|.+++||+++++++.+++.+.++ .+
T Consensus 242 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~ 319 (516)
T PRK13383 242 GGTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYG-DI 319 (516)
T ss_pred CCEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcC-ch
Confidence 99998765 57889999999999999999999999998764321 2345789999999999999999999988876 78
Q ss_pred eeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++|.||+||++..+...........+++|+|++|++++|+|++|+++|+|.
T Consensus 320 v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~ 370 (516)
T PRK13383 320 LYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRV 370 (516)
T ss_pred hhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCC
Confidence 999999999976543322222334578999999999999999999999875
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=363.99 Aligned_cols=329 Identities=14% Similarity=0.124 Sum_probs=248.9
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+++.+. .+.+||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 23 ~a~~~p~~~a~~~~~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l 96 (540)
T PRK05857 23 QARQQPEAIALRRCDG------TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMA 96 (540)
T ss_pred HHhhCCCcEEEeecCC------CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence 4578999999986443 13799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
++.++.+++.++++.++++++++++....... .+.+.... ..+.++..... . . +.+.....
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------~-~-~~~~~~~~--- 158 (540)
T PRK05857 97 DGNLPIAAIERFCQITDPAAALVAPGSKMASS------AVPEALHSIPVIAVDIAAVT-------R-E-SEHSLDAA--- 158 (540)
T ss_pred CccCCHHHHHHHHHhcCCceEEEeccchhccc------cccccccccceeEeeccccc-------c-c-cccccccc---
Confidence 99999999999999999999999976421111 11110100 11222110000 0 0 00000000
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh----hhcCCCCCCEEEEecCcccchhhHHHHHH
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW----AHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (551)
.........++++++++|||||||.||||+++|+++.+...... ..+....+++++...|++|+.+++..+.+
T Consensus 159 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~ 235 (540)
T PRK05857 159 ---SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTC 235 (540)
T ss_pred ---ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHH
Confidence 00111234568999999999999999999999999876543221 12455678899999999999998888899
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCC
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (551)
++.|+++++. ..++..+++.|++++||++.++|++++.|.+.......+++++|.+++||++++....+++ ..++ +
T Consensus 236 l~~G~~~v~~--~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~-~~~g-~ 311 (540)
T PRK05857 236 LMHGGLCVTG--GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFI-EATG-V 311 (540)
T ss_pred hhcceeEEec--CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHH-HHhC-C
Confidence 9999998763 3467889999999999999999999999987654445678999999999999988776544 4554 8
Q ss_pred ceeccccccccccccccCCcCC----CCCcCccCCCCCCceEEEECCCCC
Q 008848 499 AIIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGV 544 (551)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~g~~v~IlD~~g~ 544 (551)
++++.||+||++...+...... ..+.+++|+|++|++++|+|++++
T Consensus 312 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~ 361 (540)
T PRK05857 312 RTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGI 361 (540)
T ss_pred eeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECcccc
Confidence 9999999999875433221111 224578999999999999998876
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=327.90 Aligned_cols=344 Identities=18% Similarity=0.172 Sum_probs=281.5
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+|+++||++|++++++ .|||+||+++++++|..|+++ +++||+|.+.+||..+++++++|.+|+|+++|.-
T Consensus 37 ~A~~~pdriAv~d~~~--------~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlA 108 (542)
T COG1021 37 HAARYPDRIAVIDGER--------RLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLA 108 (542)
T ss_pred HHhhcCCceEEecCcc--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhc
Confidence 4589999999999887 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
-|.+...+|.+..+.++++.+|.+.... .+...+...++....+....++..+... .....+..+.....
T Consensus 109 LpsHr~~Ei~~f~~~~e~~~~i~~~~~~-gFd~~~~ar~~~a~~~tlr~v~v~ge~~-------~~~~~~~~~~~~a~-- 178 (542)
T COG1021 109 LPSHRASELGAFASQIEAALLIVARQHS-GFDYRPFARELVAKHPTLRHVIVAGEAE-------HPSVLEAALCHPAG-- 178 (542)
T ss_pred cchhhHHHHHHHHHhhcchheeechhhc-ccCcHHHHHHHHhhCCcceEEEEccCCC-------CcchhhhhhhCccc--
Confidence 9999999999999999999999987542 3333344455555555533333332211 11112222222221
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh--HHHHHHHHh
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLN 421 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~l~~ 421 (551)
...+..+.+++++||...+.||||.||-+..+|..+..++......+.++..+++++..|..|.+.+ -.+++.++.
T Consensus 179 --~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~a 256 (542)
T COG1021 179 --LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA 256 (542)
T ss_pred --cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeee
Confidence 1122345567889999999999999999999999988888877788999999999999999997666 458899999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++|+.+ ++++.....+|++|+||+..++|.+...++++......+++|||.+-+||..+++++.++....++ |.+.
T Consensus 257 gG~VVla~-~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lg-C~LQ 334 (542)
T COG1021 257 GGTVVLAP-DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLG-CQLQ 334 (542)
T ss_pred ccEEEECC-CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhC-chHH
Confidence 99999976 678899999999999999999999999999988778889999999999999999999999988876 8999
Q ss_pred ccccccccccccccCCcCCCCCcCccCCCC-CCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~g~~v~IlD~~g~~vp~Gv 550 (551)
+.+||.|.-++++--......-..+-|||+ |.-+++|+|++|+||++|-
T Consensus 335 QVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE 384 (542)
T COG1021 335 QVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGE 384 (542)
T ss_pred HHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCC
Confidence 999999976654322111112235789997 5679999999999999995
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=357.85 Aligned_cols=345 Identities=18% Similarity=0.184 Sum_probs=264.4
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++||++|+++.+. .+.++.+||+||.++++++|+.|.++ +++||+|+++++|++++++++|||+++|++++|++
T Consensus 17 a~~~p~~~a~~~~~~---~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~ 93 (517)
T PRK08008 17 ADVYGHKTALIFESS---GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPIN 93 (517)
T ss_pred HHHCCCceEEEcccC---CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcC
Confidence 478999999998653 24456899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcC--CCceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA--PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
|.++.+++.++++++++++++++.... +.+.++.... ..+.+.+..... ........++++......
T Consensus 94 ~~~~~~~l~~~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~- 162 (517)
T PRK08008 94 ARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQQEDATPLRHICLTRVAL----PADDGVSSFTQLKAQQPA- 162 (517)
T ss_pred cccCHHHHHHHHHhcCceEEEEecchh------HHHHHHHhhccccCcEEEEecCCC----cccccccCHHHHhccCCc-
Confidence 999999999999999999999987532 2222222211 112222211110 001123345544333221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHh
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLN 421 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~ 421 (551)
.........++++++|+|||||||.||||+++|++++...........+.+++++++..|++|..+. ..++.++..
T Consensus 163 ---~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~ 239 (517)
T PRK08008 163 ---TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSA 239 (517)
T ss_pred ---cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhc
Confidence 0111223456899999999999999999999999987654433334467889999999999987554 567888999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++++.+ .+++..+++.|+++++|++.++|++++.+............+++.+.+++ +++++...++.+.++ ++++
T Consensus 240 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 316 (517)
T PRK08008 240 GATFVLLE-KYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERFG-VRLL 316 (517)
T ss_pred CcEEEEcc-ccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHhC-CeEE
Confidence 99999986 56888999999999999999999999998765433333456788877754 788888888877765 8999
Q ss_pred ccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||++..++..........+++|+|++|++++|+|++|+++|.|.
T Consensus 317 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~ 365 (517)
T PRK08008 317 TSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGE 365 (517)
T ss_pred eeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCC
Confidence 9999999986555443333445678999999999999999999999874
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=370.92 Aligned_cols=340 Identities=17% Similarity=0.137 Sum_probs=250.5
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+. ..+.++.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 58 ~a~~~pd~~a~~~~~~--~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl 135 (624)
T PRK12582 58 WAAEAPDRPWLAQREP--GHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPV 135 (624)
T ss_pred HHHHCCCchheecccC--CCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeec
Confidence 3478999999987542 123456999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCH-----HHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhcc
Q 008848 264 ADSFAA-----REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (551)
Q Consensus 264 ~~~~~~-----~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~ 338 (551)
+|.++. +++.+++++++++++|+++.... ......+ ......++++..... ......++++...
T Consensus 136 ~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~-~~~~~~~i~~~~~~~------~~~~~~~~~~~~~ 204 (624)
T PRK12582 136 SPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPF----ARALAAL-DLLDVTVVHVTGPGE------GIASIAFADLAAT 204 (624)
T ss_pred cCccccccCCHHHHHHHHHhcCCcEEEecCHHHH----HHHHHhh-hhcCceEEEEcCCCc------ccccccHHHHhhc
Confidence 999985 99999999999999999763100 0000111 111122222221110 0122345555443
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCC---CCEEEEecCcccchhhH-H
Q 008848 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV---GDVYCWPTNLGWVMGPV-I 414 (551)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~---~d~~l~~~~~~~~~~~~-~ 414 (551)
... ...........++++++|+|||||||.||||+++|++++.........+.... .++++.+.|++|.++.. .
T Consensus 205 ~~~--~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~ 282 (624)
T PRK12582 205 PPT--AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNAN 282 (624)
T ss_pred CCc--chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHH
Confidence 221 00001112345789999999999999999999999999877665544444443 57999999999998874 4
Q ss_pred HHHHHHhCCEEEEecCCCChh---hHHHHHHHcCCcEEEecHHHHHHHHhcCcc----CCCCCCCccEEEeecCCCChhh
Q 008848 415 LFSSFLNGATLALYQGSPLER---SFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----EGLDWTKIRSFASTGETSNVDD 487 (551)
Q Consensus 415 ~~~~l~~G~~lvl~~~~~~~~---~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~----~~~~l~sLr~i~~gGe~l~~~~ 487 (551)
++.++..|+++++.++.+++. .+++.++++++|++.++|++++.|.+.... ...++++||.+++||+++++++
T Consensus 283 ~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~ 362 (624)
T PRK12582 283 FNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDL 362 (624)
T ss_pred HHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHH
Confidence 667899999999976444433 456778999999999999999988753211 1234789999999999999999
Q ss_pred HHHHHHhc----c-CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC
Q 008848 488 DLWLSSKA----W-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540 (551)
Q Consensus 488 ~~~~~~~~----~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD 540 (551)
.+++.+.+ + +++++|.||+||++..++... ......+++|+|++|++++|++
T Consensus 363 ~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~-~~~~~~~svG~p~pg~~v~i~~ 419 (624)
T PRK12582 363 YERMQALAVRTTGHRIPFYTGYGATETAPTTTGTH-WDTERVGLIGLPLPGVELKLAP 419 (624)
T ss_pred HHHHHHHHHhhcCCCceEEeccccccccceeeccc-CCCCCCCCCCcCCCCcEEEEcc
Confidence 99887752 2 357999999999976443222 2234567999999999999985
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=357.46 Aligned_cols=325 Identities=18% Similarity=0.184 Sum_probs=266.2
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++.+|+++|+.+.+. .+||+||.++++++|+.|.+. +++||+|+|+++|+.++++++|||+++|++++|++
T Consensus 10 a~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 81 (502)
T TIGR01734 10 AETYPQTIAYRYQGQ--------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVD 81 (502)
T ss_pred HHHCCCceEEEcCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCC
Confidence 467899999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
+.++.+++.++++.++++++++++...... .....+.+. ....+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~------------~~~~~~~~~---------------~~~~~~~~~~~--- 131 (502)
T TIGR01734 82 TSIPSERIEMIIEAAGPELVIHTAELSIDA------------VGTQIITLS---------------ALEQAETSGGP--- 131 (502)
T ss_pred CcChHHHHHHHHHhcCCCEEEecccccccc------------cCCceEEch---------------HhhhhhhhcCC---
Confidence 999999999999999999999987532100 000111110 00111111100
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCE
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (551)
........+++.++|+|||||||.||||+++|+++...+.+....+++..+++++...|++|+.+++.++.++..|++
T Consensus 132 --~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~ 209 (502)
T TIGR01734 132 --VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGT 209 (502)
T ss_pred --ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCE
Confidence 001123356889999999999999999999999999888887777889999999999999999999888999999999
Q ss_pred EEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceec
Q 008848 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (551)
Q Consensus 425 lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (551)
+++.+.. .++..+++.++++++|.+.++|++++.++........++++++.++++|++++++..+++.+.++++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 289 (502)
T TIGR01734 210 LHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYN 289 (502)
T ss_pred EEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEe
Confidence 9998742 36788999999999999999999998877654444556889999999999999999999999888789999
Q ss_pred cccccccccccccCCc----CCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 503 SCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 503 ~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.||+||++++++.... .......++|+|++|++++|+|++++++|+|.
T Consensus 290 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~ 341 (502)
T TIGR01734 290 TYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGE 341 (502)
T ss_pred CccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCC
Confidence 9999998754332211 11233467999999999999999999999874
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=355.34 Aligned_cols=330 Identities=18% Similarity=0.165 Sum_probs=262.9
Q ss_pred CCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCC
Q 008848 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (551)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~ 266 (551)
.+|+++|+.+.+. +.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.
T Consensus 14 ~~~~~~a~~~~~~-------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~ 86 (504)
T PRK07514 14 ADRDAPFIETPDG-------LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTA 86 (504)
T ss_pred hCCCCeEEEeCCC-------CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCC
Confidence 7899999987443 2899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc-eEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCC
Q 008848 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (551)
Q Consensus 267 ~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (551)
++.+++..+++.++++++++++... .....+....... .+.+... ....+.+......
T Consensus 87 ~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~----- 145 (504)
T PRK07514 87 YTLAELDYFIGDAEPALVVCDPANF------AWLSKIAAAAGAPHVETLDAD----------GTGSLLEAAAAAP----- 145 (504)
T ss_pred CCHHHHHHHHHhCCCcEEEEccchh------HHHHHhhhccCCceEEEecCC----------CcccHHHhhhhcC-----
Confidence 9999999999999999999987532 1112221111111 2222110 0111222221111
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCE
Q 008848 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (551)
Q Consensus 346 ~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~ 424 (551)
.........+++++||+|||||||.||||+++|++++..+......++++++|++++..|+.|..++ +.++.+++.|++
T Consensus 146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 225 (504)
T PRK07514 146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS 225 (504)
T ss_pred cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence 1122234467899999999999999999999999999888777777889999999999999998886 457789999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 425 lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+++.+ ..++..+++.+. ++|++.++|+++..+++........++++|.+++||+++++++.+++.+.++ .+++|.|
T Consensus 226 ~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~Y 301 (504)
T PRK07514 226 MIFLP-KFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG-HAILERY 301 (504)
T ss_pred EEECC-CCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhC-Ccceeec
Confidence 99976 467888999884 6999999999999988765555566889999999999999999999988775 7899999
Q ss_pred cccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
|+||++...+. ........+++|.|++|++++|+| ++++++|.|.
T Consensus 302 G~tE~~~~~~~-~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~ 347 (504)
T PRK07514 302 GMTETNMNTSN-PYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGE 347 (504)
T ss_pred ccccccccccC-CccccccCcccccCCCCcEEEEEECCCCCCCCCCC
Confidence 99998754332 222233457899999999999999 8899999874
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=359.28 Aligned_cols=346 Identities=20% Similarity=0.178 Sum_probs=261.7
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+++.++ .+||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 33 a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~ 104 (557)
T PRK07059 33 FRQYADRPAFICMGK--------AITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVN 104 (557)
T ss_pred HHHcCCCceEEEcCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccC
Confidence 478999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecC-CCCC-----------------CCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPA-IGND-----------------VGIPLR 326 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~-----------------~~~~~~ 326 (551)
|.++.+++.+++++++++++++++.+. .....+........+.+.. .... ......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (557)
T PRK07059 105 PLYTPRELEHQLKDSGAEAIVVLENFA------TTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSL 178 (557)
T ss_pred cccCHHHHHHHHHccCceEEEEchhhH------HHHHHhhcccCCceeEEecccccccccccccccccccccccccccCC
Confidence 999999999999999999999987532 1111111111111111111 0000 000001
Q ss_pred CCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh----cCCC---CCCE
Q 008848 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLK---VGDV 399 (551)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~----~~~~---~~d~ 399 (551)
++...+++++..... .........++++|+|+|||||||.||||+++|++++..+...... +... ....
T Consensus 179 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (557)
T PRK07059 179 PGHVRFNDALAEGAR----QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN 254 (557)
T ss_pred CCcccHHHHhhccCC----CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence 123345544433221 1112234567899999999999999999999999987655432211 1111 2346
Q ss_pred EEEecCcccchhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEe
Q 008848 400 YCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (551)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~ 478 (551)
+++..|++|..+. ...+.++..|++.++.+...++..+++.|+++++|.+.++|+++..+.........+++++|.++.
T Consensus 255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~ 334 (557)
T PRK07059 255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANG 334 (557)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEe
Confidence 7788899887765 456678889999888775457888999999999999999999999998875555567889999999
Q ss_pred ecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||+++++.+.+++.+.++ +++++.||+||++..++..........+++|+|++|++++|+|++|+++|+|.
T Consensus 335 gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~ 405 (557)
T PRK07059 335 GGMAVQRPVAERWLEMTG-CPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGE 405 (557)
T ss_pred ccccCCHHHHHHHHHHhC-CCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCC
Confidence 999999999888887765 89999999999986544333222234578999999999999999999999885
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=358.24 Aligned_cols=360 Identities=17% Similarity=0.135 Sum_probs=263.1
Q ss_pred CcCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 008848 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (551)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~ 244 (551)
+|......+.....+.. +++++|+++|+++.+. .+.+||+||+++++++|++|.+. +++||+|+|+++|++
T Consensus 8 ~~~~~~~~~~l~~~l~~--~a~~~p~~~ai~~~~~------~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~ 79 (534)
T PRK05852 8 APMASDFGPRIADLVEV--AATRLPEAPALVVTAD------RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNA 79 (534)
T ss_pred cchhhhhcccHHHHHHH--HHHhCCCCcEEEecCC------CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcH
Confidence 44333333333334433 3478999999987543 13799999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCC
Q 008848 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324 (551)
Q Consensus 245 e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 324 (551)
++++++|||+++|++++|++|.++.+++.+++++++++++|++........ ..... .....+.+......
T Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~---- 149 (534)
T PRK05852 80 EFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA-----EPTTR-WWPLTVNVGGDSGP---- 149 (534)
T ss_pred HHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc-----ccccc-ccceeeeecccccc----
Confidence 999999999999999999999999999999999999999999864211000 00000 00111111110000
Q ss_pred CCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEec
Q 008848 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT 404 (551)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~ 404 (551)
....... ........ . ..........+++++|+|||||||.||||+++|+++.+.+......+++.++|++++..
T Consensus 150 -~~~~~~~-~~~~~~~~--~-~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 224 (534)
T PRK05852 150 -SGGTLSV-HLDAATEP--T-PATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVM 224 (534)
T ss_pred -ccccccc-ccccccCC--C-ccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEec
Confidence 0000000 00000000 0 00011111246789999999999999999999999998888777788899999999999
Q ss_pred CcccchhhH-HHHHHHHhCCEEEEecC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccC--CCCCCCccEEEeec
Q 008848 405 NLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTG 480 (551)
Q Consensus 405 ~~~~~~~~~-~~~~~l~~G~~lvl~~~-~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~sLr~i~~gG 480 (551)
|++|..++. .++.+++.|+++++.+. .+++..+++.|+++++|++.++|+++..|.+..... ..+++++|.++++|
T Consensus 225 p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G 304 (534)
T PRK05852 225 PLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCS 304 (534)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECC
Confidence 999998875 47778889999887543 457889999999999999999999999998754221 23478999999999
Q ss_pred CCCChhhHHHHHHhccCCceeccccccccccccccCCcC------C-CCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL------Q-PQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~------~-~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+++++++.+++.+.++ .++++.||+||++..++..... . ....+.+|+ .+|++++|+|++|+++|+|.
T Consensus 305 ~~~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d~~g~~~~~g~ 379 (534)
T PRK05852 305 APLTAETAQALQTEFA-APVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVGSDGLPLPAGA 379 (534)
T ss_pred CCCCHHHHHHHHHHhC-CChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEECCCCCCCCCCC
Confidence 9999999999988875 7899999999998654332211 0 112334444 69999999999999999884
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=357.11 Aligned_cols=346 Identities=20% Similarity=0.149 Sum_probs=261.0
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++.+|+++|+.+.++ .+||.||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 31 ~~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 102 (541)
T TIGR03205 31 AADYGPRPALEFRDR--------PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLS 102 (541)
T ss_pred HHHcCCCceEEECCc--------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecC
Confidence 478999999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc-CCCceEEecCCCCCC------CCCCCCCCcchHHhhc
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-APLKAIVLPAIGNDV------GIPLREQDLSWKDFLS 337 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~~vv~~~~~~~------~~~~~~~~~~~~~~~~ 337 (551)
|.++.+++.+++++++++++++++... ..+...+.... .....+++....... .........++++++.
T Consensus 103 ~~~~~~~l~~~i~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T TIGR03205 103 PLDGERALSHKLSDSGARLLITSDLAA----LLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK 178 (541)
T ss_pred CCCCHHHHHHHHhhcCceEEEEeCchh----hhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence 999999999999999999999986310 01111111111 111222222211000 0001122345666554
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh-----hcCCCCCCEEEEecCcccchhh
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-----HIDLKVGDVYCWPTNLGWVMGP 412 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~~~~~~~~~ 412 (551)
.... ........++++++++|||||||.||||+++|+++.+....... .......+++++..|++|..+.
T Consensus 179 ~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 253 (541)
T TIGR03205 179 GAAA-----PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253 (541)
T ss_pred cCCC-----CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHH
Confidence 3211 11112345789999999999999999999999998765432211 1122345789999999998776
Q ss_pred H-HHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHH
Q 008848 413 V-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWL 491 (551)
Q Consensus 413 ~-~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~ 491 (551)
. .++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++
T Consensus 254 ~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~ 332 (541)
T TIGR03205 254 TVILLRSLRRGDLISLHQ-RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFF 332 (541)
T ss_pred HHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHH
Confidence 4 4678899999988765 5688999999999999999999999999887543344567899999999999999999888
Q ss_pred HHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEE--CCCCCccCCCC
Q 008848 492 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL--DECGVPYVRTF 550 (551)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~Il--D~~g~~vp~Gv 550 (551)
.+.++ .++++.||+||++..++..........+++|+|+++++++|+ |++++++|+|.
T Consensus 333 ~~~~~-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~ 392 (541)
T TIGR03205 333 ERKTG-LKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGE 392 (541)
T ss_pred HHHhC-CCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCC
Confidence 77665 789999999999865544333333456789999999998875 67889998874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=356.73 Aligned_cols=336 Identities=15% Similarity=0.156 Sum_probs=263.2
Q ss_pred CCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCC
Q 008848 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (551)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~ 268 (551)
||++|+++.+. .+||+||+++++++|++|.+. +++|++|+++++|++++++++|||+++|++++++++..+
T Consensus 37 p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~ 108 (536)
T PRK10946 37 SDAIAVICGER--------QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ 108 (536)
T ss_pred CCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCcccc
Confidence 99999998766 899999999999999999999 999999999999999999999999999998888788788
Q ss_pred HHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCC
Q 008848 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (551)
Q Consensus 269 ~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (551)
..++..++++++++++++++.... .........+....+. ..+++... .....+.++...... .
T Consensus 109 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 173 (536)
T PRK10946 109 RSELNAYASQIEPALLIADRQHAL-FSDDDFLNTLVAEHSSLRVVLLLND---------DGEHSLDDAINHPAE-----D 173 (536)
T ss_pred HHHHHHHHhhcCCCEEEEeccccc-cchHHHHHHHHhhCCCceEEEEecC---------CCCccHHHHhhCccc-----c
Confidence 889999999999999999864210 0000011122222222 22222211 122234444433221 1
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH--HHHHHHHhCCEE
Q 008848 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATL 425 (551)
Q Consensus 348 ~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~~G~~l 425 (551)
.......++++++|+|||||||.||||+++|+++...+......++++++|++++..|++|..++. .++.++..|+++
T Consensus 174 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~ 253 (536)
T PRK10946 174 FTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTV 253 (536)
T ss_pred cccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEE
Confidence 122344678999999999999999999999999999888777788899999999999999977763 578889999999
Q ss_pred EEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhc--CccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 426 vl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~--~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
++.+ .+++..+++.++++++|++.++|+++..|++. .......++++|.+++||+++++++.+++.+.++ +++++.
T Consensus 254 ~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g-~~~~~~ 331 (536)
T PRK10946 254 VLAP-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELG-CQLQQV 331 (536)
T ss_pred EECC-CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcC-CeEEEe
Confidence 9865 56788899999999999999999999998765 2222345789999999999999999998887775 899999
Q ss_pred ccccccccccccCCcCCCCCcCccCCCC-CCceEEEECCCCCccCCCC
Q 008848 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~g~~v~IlD~~g~~vp~Gv 550 (551)
||+||+++.............+++|+|+ +++.++|+|++|+++|+|.
T Consensus 332 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~ 379 (536)
T PRK10946 332 FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGE 379 (536)
T ss_pred ecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCC
Confidence 9999976543322211223457899999 7999999999999999885
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=357.26 Aligned_cols=337 Identities=16% Similarity=0.122 Sum_probs=265.4
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+++.+. .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 22 ~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 93 (524)
T PRK06188 22 LKRYPDRPALVLGDT--------RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH 93 (524)
T ss_pred HHHCCCCeEEEECCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecc
Confidence 468999999998776 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
|..+.+++.+++++++++++++++... ................++...... . ..++...... ..
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~-~~ 157 (524)
T PRK06188 94 PLGSLDDHAYVLEDAGISTLIVDPAPF-----VERALALLARVPSLKHVLTLGPVP-------D---GVDLLAAAAK-FG 157 (524)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecchh-----hHHHHHHhhhcCCceEEEEeCCcc-------c---hhhHHHhhhc-cC
Confidence 999999999999999999999987521 011111111111111111111000 0 1111111100 00
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCE
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (551)
..... ....++++++|+|||||||.||||+++|+++.+........+++..++++++..|++|..+.. ++.+++.|++
T Consensus 158 ~~~~~-~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~ 235 (524)
T PRK06188 158 PAPLV-AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGT 235 (524)
T ss_pred ccccc-ccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCE
Confidence 01111 122346699999999999999999999999999888887888899999999999999987764 6778999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 425 lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+++.+ ..++..+++.|+++++|++.++|+++..|++.......+++++|.+++||++++++....+.+.++ ..+++.|
T Consensus 236 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~Y 313 (524)
T PRK06188 236 VIVLA-KFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFG-PIFAQYY 313 (524)
T ss_pred EEEcC-CCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhC-chhhhee
Confidence 99987 468899999999999999999999999998876555567899999999999999998887777765 6799999
Q ss_pred cccccccccccCCcC-----CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 505 GGTELSSAYIQGSLL-----QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 505 G~TE~~~~~~~~~~~-----~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|+||++..+...... ......++|+|++|++++|+|++|+++|.|.
T Consensus 314 G~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~ 364 (524)
T PRK06188 314 GQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGE 364 (524)
T ss_pred CccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCC
Confidence 999997544433221 2235678999999999999999999999875
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=395.14 Aligned_cols=349 Identities=17% Similarity=0.171 Sum_probs=268.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+++++||++|+++..+ +++||+||+++++++|++|++.+++||+|+++++|++++++++|||+++|++++|++
T Consensus 624 ~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 696 (1146)
T PRK08633 624 TAKRNWSRLAVADSTG-------GELSYGKALTGALALARLLKRELKDEENVGILLPPSVAGALANLALLLAGKVPVNLN 696 (1146)
T ss_pred HHHhcCCCcEEEcCCC-------CcCcHHHHHHHHHHHHHHHHHhCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeC
Confidence 4578999999986432 289999999999999999975599999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC--CceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
|.++.+++.+++++++++++++++.+........ .....+ .+++.+...... ......+.+........
T Consensus 697 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 767 (1146)
T PRK08633 697 YTASEAALKSAIEQAQIKTVITSRKFLEKLKNKG----FDLELPENVKVIYLEDLKAK-----ISKVDKLTALLAARLLP 767 (1146)
T ss_pred CCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccC----CchhcccCceEEEeehhccc-----cchhHHHHHHHHhccCC
Confidence 9999999999999999999999875431110000 000011 112222111000 00011122221111000
Q ss_pred CC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HHHHHH
Q 008848 343 PR-PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFL 420 (551)
Q Consensus 343 ~~-~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~ 420 (551)
.. ..........++|+++|+|||||||.||||+++|+++.+........++++++|++++..|+.|..+... ++.+++
T Consensus 768 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 847 (1146)
T PRK08633 768 ARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLL 847 (1146)
T ss_pred HHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHH
Confidence 00 0000012346789999999999999999999999999988887777888999999999999999988854 788999
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
.|+++++.+...++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++|||++++++.+++++.++ +++
T Consensus 848 ~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g-~~~ 926 (1146)
T PRK08633 848 EGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFG-IRI 926 (1146)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhC-CCe
Confidence 9999999876668899999999999999999999999998765555667899999999999999999999988875 899
Q ss_pred eccccccccccccccCCcC---------CCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLL---------QPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+|.||+||++..++...+. ...+.+++|+|+||++++|+| ++|+++|+|.
T Consensus 927 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~ 986 (1146)
T PRK08633 927 LEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGE 986 (1146)
T ss_pred ecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCC
Confidence 9999999987654432211 113467899999999999999 5689999885
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=351.35 Aligned_cols=322 Identities=17% Similarity=0.176 Sum_probs=254.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++.+||++|+.+...+ +.+||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~a~~~p~~~a~~~~~~~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~ 77 (488)
T PRK09088 4 HARLQPQRLAAVDLALG------RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL 77 (488)
T ss_pred hhhhCCCceEEEecCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEee
Confidence 34678999999863111 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
++.++.+++.+++++++++++++++...... . ....++++......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~----------------~----------------~~~~~~~~~~~~~~-- 123 (488)
T PRK09088 78 NWRLSASELDALLQDAEPRLLLGDDAVAAGR----------------T----------------DVEDLAAFIASADA-- 123 (488)
T ss_pred CccCCHHHHHHHHHhCCCCEEEEcchhhccc----------------c----------------cccchhhhhhhccc--
Confidence 9999999999999999999999987532100 0 00112222111110
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HHHHHHhC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNG 422 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G 422 (551)
..........++++++++|||||||.||+|+++|+++............+..+|++++..|++|.++... ++.++..|
T Consensus 124 -~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g 202 (488)
T PRK09088 124 -LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVG 202 (488)
T ss_pred -cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcC
Confidence 0001112335678999999999999999999999999887776666667889999999999999988754 66778889
Q ss_pred CEEEEecCCCChhhHHHHHH--HcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 423 ATLALYQGSPLERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 423 ~~lvl~~~~~~~~~~~~~i~--~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
+++++.+ ..++..++..+. ++++|++.++|++++.+.+.......++++||.+++||++++......+... ++++
T Consensus 203 ~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v 279 (488)
T PRK09088 203 GSILVSN-GFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPM 279 (488)
T ss_pred CEEEEcC-CCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCce
Confidence 9998865 467778888775 4899999999999999987654444567899999999999998887776654 4789
Q ss_pred eccccccccccccccCCc--CCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++.||+||++..+..... ....+.+++|+|+++++++|+|++|+++|.|.
T Consensus 280 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~ 331 (488)
T PRK09088 280 VDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGV 331 (488)
T ss_pred eeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCC
Confidence 999999999864322111 11235678999999999999999999998874
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=344.61 Aligned_cols=343 Identities=17% Similarity=0.157 Sum_probs=265.2
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
.+..+|+.+++-+....+..+.++.+||.|..+++..+|..|+++ +++++.|||+.-|++||+++..||...|++.|||
T Consensus 84 ~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~Vpl 163 (691)
T KOG1256|consen 84 SVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPL 163 (691)
T ss_pred chhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeec
Confidence 347899999998776433457899999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhh--cCCCceEEecCCCCC-CCCCCC----CCCcchHHhh
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG--AAPLKAIVLPAIGND-VGIPLR----EQDLSWKDFL 336 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~--~~~~~~~vv~~~~~~-~~~~~~----~~~~~~~~~~ 336 (551)
...++++.+.+|+++++.++++++++- ....+-+... ..+..+.++...+.. ...... -...+|+++.
T Consensus 164 YdTlg~ea~~~Ii~~~e~~iv~vd~~~-----k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~ 238 (691)
T KOG1256|consen 164 YDTLGAEAVHYIINHAEISIVFVDNAK-----KAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFE 238 (691)
T ss_pred ccCCCHHHHHHHHHhcceeEEEEeCHH-----HHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHH
Confidence 999999999999999999999999641 1111212112 133333333322221 111111 2368899998
Q ss_pred ccCCCCCCCCCCCC-CCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh---h---hcCCCCCCEEEEecCcccc
Q 008848 337 SSVDYHPRPNYYSP-VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---A---HIDLKVGDVYCWPTNLGWV 409 (551)
Q Consensus 337 ~~~~~~~~~~~~~~-~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~---~~~~~~~d~~l~~~~~~~~ 409 (551)
..+... ...+ .+..|+|.|.|+|||||||.|||||+||+|++..+.... . .......|++++++|++|+
T Consensus 239 ~lG~~~----~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi 314 (691)
T KOG1256|consen 239 ELGKKN----QRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHI 314 (691)
T ss_pred hhcccc----cCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHH
Confidence 887541 1222 466789999999999999999999999999988554211 1 1122346999999999999
Q ss_pred hhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhc----------------------Cc---
Q 008848 410 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----------------------NC--- 464 (551)
Q Consensus 410 ~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~----------------------~~--- 464 (551)
+....-...+..|+++.++.+ |+..+.+.|++.++|++.++|.+|+.+.+. ..
T Consensus 315 ~er~~~~~~~~~G~~IgF~~g--D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~ 392 (691)
T KOG1256|consen 315 FERVVELYTFYIGAKIGFARG--DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHR 392 (691)
T ss_pred HHHHHHHhHhhcccEEEEecC--ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 998665566799999999874 667888899999999999999999887642 00
Q ss_pred -cCCCC-------------------CCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCc
Q 008848 465 -LEGLD-------------------WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524 (551)
Q Consensus 465 -~~~~~-------------------l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 524 (551)
..... -..+|.+++|++|+++++...++..++ ++|+++||+|||++.++...+... ..
T Consensus 393 ~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~eGYGlTEts~g~~~~~~~d~-~l 470 (691)
T KOG1256|consen 393 LMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLEGYGLTETSAGTTLTLPGDN-VL 470 (691)
T ss_pred hhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeeecccccccCCceEeccCCCC-CC
Confidence 00000 135889999999999999999988765 899999999999955555444333 78
Q ss_pred CccCCCCCCceEEEEC
Q 008848 525 GAFSTATMTAGLVILD 540 (551)
Q Consensus 525 ~~iG~p~~g~~v~IlD 540 (551)
+++|.|+|+++++++|
T Consensus 471 gsvG~p~p~~~vKL~d 486 (691)
T KOG1256|consen 471 GSVGPPVPGNEVKLVD 486 (691)
T ss_pred CCcCCcccCceEEEec
Confidence 9999999999999977
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=351.51 Aligned_cols=333 Identities=18% Similarity=0.125 Sum_probs=251.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++.+|+++|+++.+.+ +++||+||+++++++|++|.++ +++||+|+++++|++++++++|||+++|++++|+
T Consensus 6 ~a~~~p~~~a~~~~~~~------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 6 HAQIAPDRPAVIVAETG------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAI 79 (501)
T ss_pred hhhhCCCCcEEEecCCC------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecc
Confidence 45789999999874321 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
++.++++++.+++++++++++++++... .......... ...+.+.. . ......+++.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~-~~~~~~~~-~-------~~~~~~~~~~~~~~~~-- 142 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAALD------GLAAKVGADL-PLRLSFGG-E-------IDGFGSFEAALAGAGP-- 142 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchhh------hHHHHhhhcc-ceEEEecC-c-------ccccccHHHHhcccCC--
Confidence 9999999999999999999999976431 0111111000 00111110 0 0011223333221110
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe--cchhhHHHH----HHhhhhcCCCCCCEEEEecCcccchhhHHHHH
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPW--TQLSSIRCT----AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~--sh~~l~~~~----~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (551)
.....+++++|+|||||||.||||++ +|+++.... ......+.+..++++++.+|++|+.++...+.
T Consensus 143 -------~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~ 215 (501)
T PRK13390 143 -------RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSM 215 (501)
T ss_pred -------CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHH
Confidence 01122357999999999999999995 566554321 11223467889999999999999988755555
Q ss_pred HHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhc
Q 008848 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (551)
Q Consensus 418 ~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 495 (551)
.+..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+... ....+++++|.+++||+++++++.+.+.+.+
T Consensus 216 ~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~ 294 (501)
T PRK13390 216 VHALGGTVVLAK-RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL 294 (501)
T ss_pred HHhcCceEEEcC-CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc
Confidence 678899998866 5688999999999999999999999998876432 2345678999999999999999988888766
Q ss_pred cCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+ .++++.||+||++.++...........+++|+|++| .++|+|++|+++|+|.
T Consensus 295 ~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~ 347 (501)
T PRK13390 295 G-PIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGR 347 (501)
T ss_pred C-CceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCC
Confidence 5 789999999999764333222223356789999999 7999999999999985
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=357.69 Aligned_cols=344 Identities=13% Similarity=0.125 Sum_probs=264.0
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+..+|+++|+++.+. .++.+||+||+++++++|++|++ . +++||+|+++++|+++++++++||+++|++++|+
T Consensus 20 a~~~~~~~a~~~~~~-----~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l 94 (576)
T PRK05620 20 STVHGDTTVTTWGGA-----EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPL 94 (576)
T ss_pred HHhCCCceEEEEcCC-----ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeec
Confidence 378999999987542 34689999999999999999986 7 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-c-eEEecCCCCCC---CCCCCCCCcchHHhhcc
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-K-AIVLPAIGNDV---GIPLREQDLSWKDFLSS 338 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~-~~vv~~~~~~~---~~~~~~~~~~~~~~~~~ 338 (551)
+|.++.+++.++++.++++++|+++.+. ..+..+....+. + ++++....... .........+|+++...
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (576)
T PRK05620 95 NKQLMNDQIVHIINHAEDEVIVADPRLA------EQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDG 168 (576)
T ss_pred ccccCHHHHHHHHhccCCcEEEEChhhH------HHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhc
Confidence 9999999999999999999999987532 122222222222 2 22222111000 00011123457777653
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHh--hhhcCCCCCCEEEEecCcccchhhHHHH
Q 008848 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILF 416 (551)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (551)
... ........++++++++|||||||.||||+++|+++....... ...+.+..++++++.+|++|+.+....+
T Consensus 169 ~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~ 243 (576)
T PRK05620 169 RST-----VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPL 243 (576)
T ss_pred CCC-----cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHH
Confidence 221 112233567899999999999999999999999986544322 2346788999999999999999987788
Q ss_pred HHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhcc
Q 008848 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496 (551)
Q Consensus 417 ~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~ 496 (551)
.++..|+++++.+..+++..+++.|+++++|++.++|+++..++........+..+||.+++||+++++++.+++...++
T Consensus 244 ~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~ 323 (576)
T PRK05620 244 AAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYG 323 (576)
T ss_pred HHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhC
Confidence 89999999998765668899999999999999999999999887653323334568999999999999999998887775
Q ss_pred CCceeccccccccccccccCCcCC-------CCCcCccCCCCCCceEEEECCCCCccC
Q 008848 497 YNAIIESCGGTELSSAYIQGSLLQ-------PQAFGAFSTATMTAGLVILDECGVPYV 547 (551)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~iG~p~~g~~v~IlD~~g~~vp 547 (551)
+++++.||+||++..++...+.. .....++|++.+|++++|+|+ |++++
T Consensus 324 -~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~ 379 (576)
T PRK05620 324 -VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVME 379 (576)
T ss_pred -CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-Ccccc
Confidence 78999999999986543322211 012347899999999999997 77664
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=356.56 Aligned_cols=346 Identities=18% Similarity=0.179 Sum_probs=261.9
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
++++|+++|+++.++ ++||+||.++++++|+.|+ +. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 35 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 106 (560)
T PRK08751 35 VAKFADRPAYHSFGK--------TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNV 106 (560)
T ss_pred HHhCCCCceEEECCc--------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEecc
Confidence 468899999998766 9999999999999999997 57 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCC-------------------CCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN-------------------DVGIP 324 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~-------------------~~~~~ 324 (551)
+|.++.+++.+++++++++++++++.+. .....+....+...+++..... .....
T Consensus 107 ~p~~~~~~~~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08751 107 NPLYTPRELKHQLIDSGASVLVVIDNFG------TTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEY 180 (560)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEcchhH------HHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhcccccc
Confidence 9999999999999999999999987532 1111111111211121110000 00000
Q ss_pred CCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcC----CCCC-CE
Q 008848 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID----LKVG-DV 399 (551)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~----~~~~-d~ 399 (551)
..+....+.+....... .........++++++++|||||||.||||+++|+++...+.+....+. +.++ ++
T Consensus 181 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08751 181 RINGAIRFREALALGRK----HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEV 256 (560)
T ss_pred CCCccccHHHHHhccCC----CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCce
Confidence 00112233333322211 111223346789999999999999999999999999877765544433 3344 56
Q ss_pred EEEecCcccchhhH-HHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEe
Q 008848 400 YCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (551)
Q Consensus 400 ~l~~~~~~~~~~~~-~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~ 478 (551)
+++..++.|..+.. ..+.++..|++.++.....++..+++.|+++++|++..+|+++..+.+.......++++||.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~ 336 (560)
T PRK08751 257 VITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLG 336 (560)
T ss_pred EEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeee
Confidence 67778888887763 35667788998888765568889999999999999999999999998865555567889999999
Q ss_pred ecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||+++++.+.+.+++.++ +++++.||+||++..++..........+++|+|++|++++|+|++|+++|.|.
T Consensus 337 gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~ 407 (560)
T PRK08751 337 GGMAVQRSVAERWKQVTG-LTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGE 407 (560)
T ss_pred CCCCCCHHHHHHHHHHhC-CeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCC
Confidence 999999999988887664 78999999999986544332222344578999999999999999999999874
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=351.56 Aligned_cols=325 Identities=18% Similarity=0.167 Sum_probs=265.6
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+..+|+++|+.+.+. ++||+||.++++++|.+|.+. +++|++|+++++|+.++++++|||+++|++++|++
T Consensus 12 a~~~p~~~~~~~~~~--------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~ 83 (503)
T PRK04813 12 AQTQPDFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVD 83 (503)
T ss_pred HHhCCCceEEEeCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCC
Confidence 367899999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
+.++.+++.++++.++++++++++...... ..... ..++++...... .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~----------------~~~~~~~~~~~~--~ 131 (503)
T PRK04813 84 VSSPAERIEMIIEVAKPSLIIATEELPLEI--------------LGIPV----------------ITLDELKDIFAT--G 131 (503)
T ss_pred CCChHHHHHHHHHhcCCCEEEecccccccc--------------cCCcE----------------EehHHhhhhhhc--c
Confidence 999999999999999999999987531000 00000 111121111000 0
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCE
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (551)
..........++++++++|||||||.||||.++|+++.....+....+.+..+++++...|++|+.+.+.++.++..|++
T Consensus 132 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~ 211 (503)
T PRK04813 132 NPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGT 211 (503)
T ss_pred ccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCE
Confidence 00011223456889999999999999999999999999888877777889999999999999999998888899999999
Q ss_pred EEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceec
Q 008848 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (551)
Q Consensus 425 lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (551)
+++++.. .++..+++.++++++|++..+|++++.+.........+++++|.++++|+++++.+.+++.+.++++++++
T Consensus 212 ~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~ 291 (503)
T PRK04813 212 LVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYN 291 (503)
T ss_pred EEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEe
Confidence 9998753 36788999999999999999999998876544344556889999999999999999999999987788999
Q ss_pred cccccccccccccCCc----CCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 503 SCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 503 ~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.||+||++..++.... .......++|+|.+|++++|+|++|+++|.|.
T Consensus 292 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~ 343 (503)
T PRK04813 292 TYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGE 343 (503)
T ss_pred CcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCC
Confidence 9999998754332211 11234567999999999999999999999875
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=349.97 Aligned_cols=340 Identities=20% Similarity=0.148 Sum_probs=258.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+.+.++ .+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 12 ~a~~~p~~~a~~~~~~--------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l 83 (533)
T PRK07798 12 VADAVPDRVALVCGDR--------RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNV 83 (533)
T ss_pred HHHhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEec
Confidence 4578999999999766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc--eEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
++.++.+++.++++++++++++++.... .....+....+.. ++.+..... .....+..+++++......
T Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 154 (533)
T PRK07798 84 NYRYVEDELRYLLDDSDAVALVYEREFA------PRVAEVLPRLPKLRTLVVVEDGSG---NDLLPGAVDYEDALAAGSP 154 (533)
T ss_pred CcCCCHHHHHHHHhhcCCCEEEEchhhH------HHHHHHhccCCCccEEEEecCCcc---cccCCccccHHHHHhccCC
Confidence 9999999999999999999999987532 1122222222211 222221111 0111134467776544322
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh---------cCC------CCCCEEEEecCc
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---------IDL------KVGDVYCWPTNL 406 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~---------~~~------~~~d~~l~~~~~ 406 (551)
...... ..++.++|+|||||||.||||+++|+++.......... ..+ ..+++++...|+
T Consensus 155 -----~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 228 (533)
T PRK07798 155 -----ERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPL 228 (533)
T ss_pred -----cCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecch
Confidence 011111 22345799999999999999999999987654432211 111 577899999999
Q ss_pred ccchhhHHHHHHHHhCCEEEEecC-CCChhhHHHHHHHcCCcEEEecHHHHHH-HHhcCc-cCCCCCCCccEEEeecCCC
Q 008848 407 GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKA-WRNTNC-LEGLDWTKIRSFASTGETS 483 (551)
Q Consensus 407 ~~~~~~~~~~~~l~~G~~lvl~~~-~~~~~~~~~~i~~~~vt~l~~~Ps~l~~-l~~~~~-~~~~~l~sLr~i~~gGe~l 483 (551)
.|+.+.+.++.+++.|+++++.+. .+++..+++.|+++++|++.++|..+.. +.+... ....+++++|.+++||+++
T Consensus 229 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~ 308 (533)
T PRK07798 229 MHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALF 308 (533)
T ss_pred hhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCC
Confidence 999999999999999999999873 4578899999999999999999876533 333221 2345678999999999999
Q ss_pred ChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccC--CCCCCceEEEECCCCCccCCCC
Q 008848 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS--TATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG--~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++++.+++.+.+++..+++.||+||++.+....... ...+.| ++.++..++|+|++|+++++|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~---~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~ 374 (533)
T PRK07798 309 SPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK---GAVHTGGPRFTIGPRTVVLDEDGNPVEPGS 374 (533)
T ss_pred CHHHHHHHHHHcCCCeEEeeecccccccccccCCCC---CCccCCCCccCCCceEEEECCCCCCCCCCC
Confidence 999999999888778999999999986543322111 112344 8889999999999999999874
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=351.56 Aligned_cols=346 Identities=18% Similarity=0.178 Sum_probs=258.5
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
++++|+++|+++.+. .+||+||.++++++|.+|.+ . +++||+|+++++|++++++++|||+++|++++|+
T Consensus 33 a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 104 (560)
T PRK08974 33 VARYADQPAFINMGE--------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNV 104 (560)
T ss_pred HHhCCCCceEEECCc--------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEecc
Confidence 468999999998665 89999999999999999985 7 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCC-------------------CC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG-------------------IP 324 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~-------------------~~ 324 (551)
+|.++.+++.+++++++++++++++.+. .....+........+++........ ..
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (560)
T PRK08974 105 NPLYTPRELEHQLNDSGAKAIVIVSNFA------HTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKY 178 (560)
T ss_pred CccCCHHHHHHHHHhcCceEEEEecccc------HHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccc
Confidence 9999999999999999999999987532 1122222111111111111000000 00
Q ss_pred CCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhc---CCCCCCEEE
Q 008848 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYC 401 (551)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l 401 (551)
..+...++.+....... .........++++++|+|||||||.||||+++|+++...+......+ ....+++++
T Consensus 179 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
T PRK08974 179 HLPDAISFRSALHKGRR----MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV 254 (560)
T ss_pred cCCCcccHHHHhhccCC----CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEE
Confidence 00011122222211111 01111224578999999999999999999999999987654433222 233456778
Q ss_pred EecCcccchhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeec
Q 008848 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (551)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gG 480 (551)
...|++|.++. ...+.++..|+++++.....++..+++.++++++|.+..+|++++.|.+.......+++++|.+++||
T Consensus 255 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg 334 (560)
T PRK08974 255 TALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGG 334 (560)
T ss_pred EeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecC
Confidence 88888887775 44666788999988875445778899999999999999999999999876544455678999999999
Q ss_pred CCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+++++.+..+|++.++ ++++|.||+||++..++.+........+++|+|++|++++|+|++|+++|.|.
T Consensus 335 ~~~~~~~~~~~~~~~g-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~ 403 (560)
T PRK08974 335 MAVQQAVAERWVKLTG-QYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGE 403 (560)
T ss_pred ccCCHHHHHHHHHHhC-CcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCC
Confidence 9999999888887654 89999999999886554443333344678999999999999999999999874
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=349.90 Aligned_cols=319 Identities=16% Similarity=0.126 Sum_probs=245.6
Q ss_pred CCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-c-CCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC
Q 008848 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (551)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v-~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~ 265 (551)
..|+++|+++.+. .+||+||.++++++|++|.+. + ++||+|+++++|++++++++|||+++|++++|++|
T Consensus 13 ~~p~~~Al~~~~~--------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p 84 (540)
T PRK13388 13 AGDDTIAVRYGDR--------TWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNT 84 (540)
T ss_pred ccCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecc
Confidence 3699999998766 999999999999999999999 9 89999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCC
Q 008848 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (551)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (551)
.++.+++.+++++++++++|+++.... ....+. ......+++.. ..+.+++.....
T Consensus 85 ~~~~~~l~~~l~~~~~~~~i~~~~~~~------~~~~~~-~~~~~~i~~~~-------------~~~~~~~~~~~~---- 140 (540)
T PRK13388 85 TRRGAALAADIRRADCQLLVTDAEHRP------LLDGLD-LPGVRVLDVDT-------------PAYAELVAAAGA---- 140 (540)
T ss_pred cCChHHHHHHHHhcCCCEEEEChhhhH------HHHhhc-ccCceEEEccc-------------hhhhhhhccccC----
Confidence 999999999999999999999875321 111110 00112222210 123333321111
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HHHHHHhCCE
Q 008848 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGAT 424 (551)
Q Consensus 346 ~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~~ 424 (551)
..+.....++++++|+|||||||+||||+++|+++.+........++++++|++++.+|++|..++.. ++.+|..|++
T Consensus 141 -~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~ 219 (540)
T PRK13388 141 -LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAA 219 (540)
T ss_pred -cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcE
Confidence 01112345789999999999999999999999999888877777889999999999999999988765 4457899999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 425 lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+++.+ .+++..+++.|+++++|++.++|+.+..++..........++++.+ + |++++++...++.+.++ ++++|.|
T Consensus 220 ~v~~~-~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~~-~~l~~~Y 295 (540)
T PRK13388 220 VALPA-KFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRFG-CQVEDGY 295 (540)
T ss_pred EEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHhC-Cceeccc
Confidence 98865 4678899999999999999999999998886543222223466643 3 55667777777777765 7899999
Q ss_pred cccccccccccCCcCCCCCcCccCCCCCCceEE-----------EECCCCCcc
Q 008848 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY 546 (551)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~-----------IlD~~g~~v 546 (551)
|+||++.+++.. . ....+++|+|++|++++ ++|++|+++
T Consensus 296 G~tE~~~~~~~~-~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~ 345 (540)
T PRK13388 296 GSSEGAVIVVRE-P--GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALL 345 (540)
T ss_pred ccccccceeecC-C--CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccc
Confidence 999998654322 1 23457899999998764 566666665
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=352.81 Aligned_cols=309 Identities=18% Similarity=0.189 Sum_probs=235.4
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++.+|+++|+++.+. ++||+||+++++++|++|.++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 24 ~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~ 95 (579)
T PLN03102 24 SECYPNRTSIIYGKT--------RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPIN 95 (579)
T ss_pred HHhCCCCeEEEECCc--------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecc
Confidence 467999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcC-------CCceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
|.++.+++.++|+.++++++|+++.+. +....+.... ...++++....... .......+|+++..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 167 (579)
T PLN03102 96 TRLDATSIAAILRHAKPKILFVDRSFE------PLAREVLHLLSSEDSNLNLPVIFIHEIDFPK--RPSSEELDYECLIQ 167 (579)
T ss_pred ccCCHHHHHHHHhccCCeEEEEChhhH------HHHHHHHhhccccccccCceEEEeccccccc--CCcccccCHHHHHh
Confidence 999999999999999999999987532 1122221111 11233332111100 00112345666554
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHH
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (551)
.................++++++|+|||||||.||||+++|+++..........+.+...+++++..|++|..+....+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~ 247 (579)
T PLN03102 168 RGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWG 247 (579)
T ss_pred ccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHH
Confidence 33210000000011235689999999999999999999999997544433334455677789999999999888877778
Q ss_pred HHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccC
Q 008848 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (551)
Q Consensus 418 ~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~ 497 (551)
++..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.+++.. + +
T Consensus 248 ~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g 324 (579)
T PLN03102 248 TAARGGTSVCMR-HVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-G 324 (579)
T ss_pred HHHhcCcEEeec-cCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-C
Confidence 899999999886 457788999999999999999999999998764333334567888999999999998888764 4 4
Q ss_pred Cceecccccccccccc
Q 008848 498 NAIIESCGGTELSSAY 513 (551)
Q Consensus 498 ~~l~n~YG~TE~~~~~ 513 (551)
.++++.||+||+++.+
T Consensus 325 ~~i~~~YG~tE~~~~~ 340 (579)
T PLN03102 325 FQVMHAYGLTEATGPV 340 (579)
T ss_pred CeEEeecCccccCccc
Confidence 7899999999987543
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=346.05 Aligned_cols=305 Identities=18% Similarity=0.116 Sum_probs=250.6
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~ 265 (551)
.++.++++|+++.++ ++||+||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|++|
T Consensus 10 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 77 (471)
T PRK07787 10 AAAADIADAVRIGGR--------VLSRSDLAGAATAVAERVA----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPP 77 (471)
T ss_pred hcccCCceEEEeCCc--------EEEHHHHHHHHHHHHHHhc----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 367789999999777 9999999999999999986 5799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCC
Q 008848 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (551)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (551)
..+.+++.++++++++++++++.... .. ..+...+.. ....+.
T Consensus 78 ~~~~~~l~~~l~~~~~~~il~~~~~~-----~~-------~~~~~~~~~-------------~~~~~~------------ 120 (471)
T PRK07787 78 DSGVAERRHILADSGAQAWLGPAPDD-----PA-------GLPHVPVRL-------------HARSWH------------ 120 (471)
T ss_pred CCChHHHHHHHHhcCCCEEEecCCcc-----cc-------cccceeeec-------------cccccc------------
Confidence 99999999999999999999976310 00 000000000 000000
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH-HHHHHHHhCCE
Q 008848 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGAT 424 (551)
Q Consensus 346 ~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~~ 424 (551)
......++++++|+|||||||.||||+++|+++...+......+++.+++++++..|+.|..+.+ .++.++..|++
T Consensus 121 ---~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 197 (471)
T PRK07787 121 ---RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNR 197 (471)
T ss_pred ---cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCE
Confidence 00123568999999999999999999999999998887777778899999999999999988874 58899999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 425 lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+++.+ .+++..+++.|+ +++|++.++|+++..|.+... ....++++|.+++||+++++++.+++.+.++ .+++|.|
T Consensus 198 ~~~~~-~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~Y 273 (471)
T PRK07787 198 FVHTG-RPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALTG-HRPVERY 273 (471)
T ss_pred EEecC-CCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-ccccccceeEEEECCCCCCHHHHHHHHHHcC-CCeeccc
Confidence 99875 568899999999 999999999999999886432 2345789999999999999999999887765 7899999
Q ss_pred cccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccC
Q 008848 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYV 547 (551)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp 547 (551)
|+||++...+. ........+++|+|++|++++|+|++|+++|
T Consensus 274 G~tE~~~~~~~-~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~ 315 (471)
T PRK07787 274 GMTETLITLST-RADGERRPGWVGLPLAGVETRLVDEDGGPVP 315 (471)
T ss_pred CccccCcceec-CCCCcccCCcccccCCCcEEEEECCCCCCCC
Confidence 99998754322 2223345678999999999999999999987
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=352.34 Aligned_cols=344 Identities=21% Similarity=0.241 Sum_probs=255.2
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+..+|+++|+++.+. .+||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 34 a~~~p~~~a~~~~~~--------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~ 105 (563)
T PRK06710 34 ASRYPEKKALHFLGK--------DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105 (563)
T ss_pred HHHCCCceEEEecCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccC
Confidence 468999999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCC---C---------------CC-
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG---I---------------PL- 325 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~---~---------------~~- 325 (551)
|.++.+++.++++.++++++++++.+.... ..+........+++........ . ..
T Consensus 106 p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (563)
T PRK06710 106 PLYTERELEYQLHDSGAKVILCLDLVFPRV------TNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVS 179 (563)
T ss_pred cccCHHHHHHHHhccCCeEEEEeccchhhh------hccchhhccceeEEeccccccccccccccchhhccccccccccc
Confidence 999999999999999999999987532111 1111100111111110000000 0 00
Q ss_pred -CCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh-hcCCCC-CCEEEE
Q 008848 326 -REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKV-GDVYCW 402 (551)
Q Consensus 326 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~-~d~~l~ 402 (551)
......|..+..... .........++++++++|||||||.||||+++|++++........ .+.... ++++++
T Consensus 180 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~ 254 (563)
T PRK06710 180 ESETIHLWNSVEKEVN-----TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLG 254 (563)
T ss_pred ccchhhhhhhhhhccc-----cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEE
Confidence 000001222111100 001111123578999999999999999999999998754432222 234433 457888
Q ss_pred ecCcccchhhH-HHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecC
Q 008848 403 PTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481 (551)
Q Consensus 403 ~~~~~~~~~~~-~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe 481 (551)
..|++|..+.. .++.+++.|+++++.+ .+++..+++.|+++++|++.++|+++..+++.......+++++|.+++||+
T Consensus 255 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~ 333 (563)
T PRK06710 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIP-KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSA 333 (563)
T ss_pred eCchHHHHHHHHHHHHHHHcCCeEEEcC-CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCC
Confidence 99999988764 4567889999999876 468889999999999999999999999998765444556789999999999
Q ss_pred CCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
++++++..++.+.++ ++++|.||+||++..............+++|+|.+++.++|+| ++++++|.|.
T Consensus 334 ~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~ 402 (563)
T PRK06710 334 PLPVEVQEKFETVTG-GKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGE 402 (563)
T ss_pred cCCHHHHHHHHHhhC-CCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCC
Confidence 999999998887764 7899999999998643332222333457899999999999999 6789998874
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=354.64 Aligned_cols=321 Identities=17% Similarity=0.151 Sum_probs=244.2
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+++.++ .+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 46 ~a~~~p~~~Ai~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l 117 (600)
T PRK08279 46 AAARHPDRPALLFEDQ--------SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALL 117 (600)
T ss_pred HHHhCCCCcEEEeCCC--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence 3478999999999776 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
++.++.+++.+++++++++++|+++... +....+...... ..+++...... .....|.++.......
T Consensus 118 ~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 185 (600)
T PRK08279 118 NTQQRGAVLAHSLNLVDAKHLIVGEELV------EAFEEARADLARPPRLWVAGGDTL------DDPEGYEDLAAAAAGA 185 (600)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHhhhhcccceEEEecCccc------cccccHHHHhhhcccC
Confidence 9999999999999999999999987532 122222222221 22222211100 0012333433222110
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HHHHHHh
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLN 421 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~ 421 (551)
+...........++++++|+|||||||.||||+++|+++++.+.+....++++++|++++..|++|.+++.. ++.++..
T Consensus 186 ~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~ 265 (600)
T PRK08279 186 PTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAA 265 (600)
T ss_pred CccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhc
Confidence 010011123345689999999999999999999999999999888777889999999999999999998865 4456777
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++++.+ .+++..+++.++++++|++.++|++++.++...........++|.+ +|+.+++++++++...++...++
T Consensus 266 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~ 342 (600)
T PRK08279 266 GATLALRR-KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRIL 342 (600)
T ss_pred CcEEEEcC-CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceee
Confidence 77777755 5788899999999999999999999999887643333345677754 47789999999999888755799
Q ss_pred ccccccccccccccCCcCCCCCcCccCCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATM 532 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~ 532 (551)
|.||+||++..++. . ....+++|++.+
T Consensus 343 ~~YG~tE~~~~~~~--~--~~~~~~~g~~~~ 369 (600)
T PRK08279 343 EFYAASEGNVGFIN--V--FNFDGTVGRVPL 369 (600)
T ss_pred eeecccccceeecc--c--CCCCcccccccc
Confidence 99999998754322 1 223456776655
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=344.71 Aligned_cols=331 Identities=19% Similarity=0.157 Sum_probs=254.5
Q ss_pred eEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHH
Q 008848 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAARE 271 (551)
Q Consensus 193 ~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~ 271 (551)
.|++.+++ .+||.||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|.++.++
T Consensus 3 ~~~~~~~~--------~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 74 (509)
T PRK12406 3 ATIISGDR--------RRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEE 74 (509)
T ss_pred eEEEECCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHH
Confidence 35666555 899999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCC--C-------CCC-CCCCCCCcchHHhhccCCC
Q 008848 272 IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG--N-------DVG-IPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 272 l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~--~-------~~~-~~~~~~~~~~~~~~~~~~~ 341 (551)
+.++++++++++++++..... .+.+..+..+.++.... . ... .........|+++......
T Consensus 75 ~~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (509)
T PRK12406 75 IAYILEDSGARVLIAHADLLH---------GLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP 145 (509)
T ss_pred HHHHHhccCCcEEEEccchhh---------hhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCc
Confidence 999999999999999875321 11111111111110000 0 000 0011233455555432211
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH---HHHhhhhcCCCCCCEEEEecCcccchhhHHHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (551)
.....++++++++|||||||.||||+++|.+..+. .......+++.++++++...|++|..+....+.+
T Consensus 146 --------~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 217 (509)
T PRK12406 146 --------YDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRA 217 (509)
T ss_pred --------cCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHH
Confidence 11234689999999999999999999987654333 3333456788999999999999998887666678
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhcc
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~ 496 (551)
+..|+++++.+ ..++..+++.++++++|++.++|+++..|++... ....+++++|.+++||+++++++.+++.+.++
T Consensus 218 ~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~ 296 (509)
T PRK12406 218 GRLGGVLVLQP-RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG 296 (509)
T ss_pred HhhheEEEEcc-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC
Confidence 89999998876 4688999999999999999999999999886432 23456889999999999999999999888765
Q ss_pred CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 497 YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+.++|.||+||++.++..........++++|+|++|++++|+|++++++|.|.
T Consensus 297 -~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~ 349 (509)
T PRK12406 297 -PVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGE 349 (509)
T ss_pred -CcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCC
Confidence 78999999999986543322222345678999999999999999999998874
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=349.80 Aligned_cols=364 Identities=19% Similarity=0.179 Sum_probs=266.1
Q ss_pred cCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHH
Q 008848 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245 (551)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e 245 (551)
|++....+..+.+ .. +++.+|+++|+.+.+. .+||+||+++++++|++|.+. +++|++|+++++|+++
T Consensus 27 ~~~~~~~~l~~~l-~~--~a~~~p~~~al~~~~~--------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~ 95 (567)
T PRK06178 27 EYPHGERPLTEYL-RA--WARERPQRPAIIFYGH--------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQ 95 (567)
T ss_pred CCCcCcccHHHHH-HH--HHHHCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcH
Confidence 4444444443332 22 3467899999998776 899999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCC----
Q 008848 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV---- 321 (551)
Q Consensus 246 ~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~---- 321 (551)
++++++||+++|++++|++|.++.+++.+++++++++++++++... +.+.++......+.+++.......
T Consensus 96 ~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~------~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 169 (567)
T PRK06178 96 FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEP 169 (567)
T ss_pred HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHhhccCCcceEEEecccccccccc
Confidence 9999999999999999999999999999999999999999987532 122222222222222221110000
Q ss_pred CCCCCC-------CCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh-hcC
Q 008848 322 GIPLRE-------QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HID 393 (551)
Q Consensus 322 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~-~~~ 393 (551)
...... ....+.++...... ...........++++|+|+|||||||.||||+++|++++........ ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~ 247 (567)
T PRK06178 170 TLPLPDSLRAPRLAAAGAIDLLPALRA--CTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVV 247 (567)
T ss_pred ccccccccccccccccccccHHHHhhc--cccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhcc
Confidence 000000 00112222221111 00111122345789999999999999999999999998876544332 356
Q ss_pred CCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCC
Q 008848 394 LKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (551)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~s 472 (551)
+.++|++++..|++|..+. ..++.++..|+++++.+ .+++..++..|+++++|.+.++|..+..+.+.......++++
T Consensus 248 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~ 326 (567)
T PRK06178 248 GGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA-RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSS 326 (567)
T ss_pred CCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcch
Confidence 7889999999999998887 45788999999999987 578899999999999999999999999988765445556778
Q ss_pred ccEEEe--ecCCCChhhHHHHHHhccCCceeccccccccccccccCCcC--C----CCCcCccCCCCCCceEEEEC-CCC
Q 008848 473 IRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--Q----PQAFGAFSTATMTAGLVILD-ECG 543 (551)
Q Consensus 473 Lr~i~~--gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~----~~~~~~iG~p~~g~~v~IlD-~~g 543 (551)
++.+.. +|+.+++++.+.+...++...+.+.||+||++..++..... . ...++++|+|++|++++|+| +++
T Consensus 327 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~ 406 (567)
T PRK06178 327 LRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETG 406 (567)
T ss_pred heeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCC
Confidence 887644 45899999999988877644455789999987543322111 1 12456799999999999999 679
Q ss_pred CccCCCC
Q 008848 544 VPYVRTF 550 (551)
Q Consensus 544 ~~vp~Gv 550 (551)
+++|.|.
T Consensus 407 ~~~~~g~ 413 (567)
T PRK06178 407 ELLPLGA 413 (567)
T ss_pred CcCCCCC
Confidence 9998774
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=345.05 Aligned_cols=320 Identities=17% Similarity=0.134 Sum_probs=250.3
Q ss_pred CCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCC
Q 008848 189 EDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (551)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~ 266 (551)
.++++|+++.+. ++||+||.++++++|++|+++ ++++++|+++++|++++++++|||+++|++++|+++.
T Consensus 16 ~~~~~a~~~~~~--------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~ 87 (529)
T PRK07867 16 EDDDRGLYFEDS--------FTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPT 87 (529)
T ss_pred ccCCceEEECCc--------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCC
Confidence 378999998766 999999999999999999996 8899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCC
Q 008848 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (551)
Q Consensus 267 ~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (551)
++.+++.+++++++++++++++... .....+ .....++... ...|.+++..... .
T Consensus 88 ~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~----~~~~~~~~~~-----------~~~~~~~l~~~~~----~ 142 (529)
T PRK07867 88 RRGAALARDIAHADCQLVLTESAHA------ELLDGL----DPGVRVINVD-----------SPAWADELAAHRD----A 142 (529)
T ss_pred CChHHHHHHHHhCCCeEEEECHhHH------HHHHhh----ccCceEEEec-----------cccHHHHhcccCC----C
Confidence 9999999999999999999997542 111111 1111222111 1124444332211 1
Q ss_pred CCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HHHHHHhCCEE
Q 008848 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATL 425 (551)
Q Consensus 347 ~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~~l 425 (551)
........++++++|+|||||||.||||+++|+++..........++++++|++++..|++|..+++. ++.++..|+++
T Consensus 143 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 222 (529)
T PRK07867 143 EPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASI 222 (529)
T ss_pred CCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceE
Confidence 11222346789999999999999999999999999888877777888999999999999999988754 56789999999
Q ss_pred EEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecccc
Q 008848 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (551)
Q Consensus 426 vl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (551)
++.+ .+++..+++.++++++|++.++|+.+..++..........+++|. ++||+++++.. .++.+.++ ++++|.||
T Consensus 223 ~~~~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g-~~l~~~YG 298 (529)
T PRK07867 223 ALRR-KFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRFG-CVVVDGFG 298 (529)
T ss_pred EecC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHhC-CcEEEeec
Confidence 8875 568899999999999999999999999888654332233467885 56888887764 55666664 78999999
Q ss_pred ccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 506 ~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+||+++.... .+ ....+++|+|++| ++|+| ++|+++|+|.
T Consensus 299 ~TE~~~~~~~-~~--~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~ 339 (529)
T PRK07867 299 STEGGVAITR-TP--DTPPGALGPLPPG--VAIVDPDTGTECPPAE 339 (529)
T ss_pred cccccccccc-CC--CCCCCCcCCCCCC--EEEEECCCCCCCCCCc
Confidence 9998754332 11 2345689999999 78888 5788888875
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=368.77 Aligned_cols=336 Identities=16% Similarity=0.123 Sum_probs=245.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 456 ~a~~~pd~~Al~~~~~--------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl 527 (994)
T PRK07868 456 QARDAPKGEFLLFDGR--------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLM 527 (994)
T ss_pred HHHHCCCCeEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 5688999999998766 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCC--CCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR--EQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 341 (551)
+|. +++.++++++++++||+++... ..+.+ ....++++..... ...... .....++++......
T Consensus 528 ~p~---~~l~~il~~s~~~~li~~~~~~---------~~~~~-~~~~iiv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 593 (994)
T PRK07868 528 PPD---TDLAAAVRLGGVTEIITDPTNL---------EAARQ-LPGRVLVLGGGES-RDLDLPDDADVIDMEKIDPDAVE 593 (994)
T ss_pred CCc---hhHHHHHhccCCeEEEEChHHH---------HHHHh-cCceEEEecCCcc-ccccCCcchhhhhhhhcCccccc
Confidence 985 6899999999999999986532 11111 1223333321110 000000 001111111110000
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
.+.........++|++||+|| ||||.||++.++|.+...........++++++|++++.+|++|+.+++..+.+++.
T Consensus 594 --~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~ 670 (994)
T PRK07868 594 --LPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVV 670 (994)
T ss_pred --CCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhc
Confidence 000001112236899999999 57788888888887655444444456788999999999999999999776666666
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|++.+++...+++..+++.|++++||++.++|++++.|++.......++++||.++ |+.+++++++++.+.++.++++
T Consensus 671 gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~ 748 (994)
T PRK07868 671 GGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVV 748 (994)
T ss_pred cceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHhCchhee
Confidence 66665555567899999999999999999999999999876444445678999876 3348999999999888778899
Q ss_pred ccccccccccccccCCcCCCCCcCccCCCCCCc-eEEEE-----------CCCC--CccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVIL-----------DECG--VPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~-~v~Il-----------D~~g--~~vp~Gv 550 (551)
|.||+||++.... .. ...+.+++|+|++|+ +++|. |++| +++|+|.
T Consensus 749 ~~YG~TE~~~~~~-~~--~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge 808 (994)
T PRK07868 749 EFFATTDGQAVLA-NV--SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNE 808 (994)
T ss_pred eeeeccccccccc-cc--CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCC
Confidence 9999999875322 11 234567999999998 66653 5666 5666653
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=341.65 Aligned_cols=337 Identities=19% Similarity=0.165 Sum_probs=258.4
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
.++++|+++|+++.+.+ +.+||+||+++++++|++|+++ +++|++|+++++|++++++++|||+++|++++|+
T Consensus 6 ~a~~~p~~~a~~~~~~~------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l 79 (511)
T PRK13391 6 HAQTTPDKPAVIMASTG------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCV 79 (511)
T ss_pred hHhhCCCceEEEecCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecc
Confidence 35789999999874321 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc--eEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
++.++.+++.++++++++++++++.... .....+....... .+.+..... ......+++.......
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 147 (511)
T PRK13391 80 NSHLTPAEAAYIVDDSGARALITSAAKL------DVARALLKQCPGVRHRLVLDGDGE------LEGFVGYAEAVAGLPA 147 (511)
T ss_pred ccccCHHHHHHHHhccCCcEEEEchhhH------HHHHHHHhcCCCceEEEEecCCCC------CcccccHHHHhcCCCC
Confidence 9999999999999999999999987531 1111222222211 122211110 0112223333321111
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEec--chhhHH---HHHHhhhhcCCCCCCEEEEecCcccchhhHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILF 416 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~s--h~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (551)
....+.++.++++|||||||.||||+++ |.++.. ........+.+.+++++++..|++|+.+....+
T Consensus 148 --------~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~ 219 (511)
T PRK13391 148 --------TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVM 219 (511)
T ss_pred --------CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHH
Confidence 0112335679999999999999999964 665432 223334556788899999999999998887778
Q ss_pred HHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHh
Q 008848 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (551)
Q Consensus 417 ~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 494 (551)
.++..|+++++.+ .+++..+++.++++++|++.++|+++..+.+... ....+++++|.+++||+++++++.+++.+.
T Consensus 220 ~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~ 298 (511)
T PRK13391 220 LVIRLGGTVIVME-HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDW 298 (511)
T ss_pred HHHHcCceEEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHH
Confidence 8999999999976 5788999999999999999999999998876432 223468899999999999999999998887
Q ss_pred ccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++ ..+++.||+||++..+...........+++|+|++| .++|+|++|+++|.|.
T Consensus 299 ~g-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~ 352 (511)
T PRK13391 299 WG-PIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGE 352 (511)
T ss_pred cC-CceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCC
Confidence 65 789999999999865433322223456799999999 6999999999999874
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=346.10 Aligned_cols=346 Identities=16% Similarity=0.127 Sum_probs=258.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++.+|+++|++..+. ++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 19 ~a~~~p~~~a~~~~~~--------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l 90 (540)
T PRK06164 19 HARARPDAVALIDEDR--------PLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAV 90 (540)
T ss_pred HHHhCCCCeEEecCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEec
Confidence 3478999999996555 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc----CC--CceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA----AP--LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~----~~--~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
++..+.+++.+++++++++++++++++.. .+....+... .. ..++++........ ......+.++..
T Consensus 91 ~~~~~~~~l~~~i~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 163 (540)
T PRK06164 91 NTRYRSHEVAHILGRGRARWLVVWPGFKG----IDFAAILAAVPPDALPPLRAIAVVDDAADATP---APAPGARVQLFA 163 (540)
T ss_pred CCCCCcHHHHHHHHhcCccEEEEcccccc----ccHHHHhhcccccccCCcceEEEeccCcccCC---CCCccccccccc
Confidence 99999999999999999999999876421 1111111110 01 11222221100000 000001111111
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHH
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (551)
..... ...........++++++++|||||||+||||+++|+++.+.+......+++.+++++++..|++|.+++..++.
T Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~ 242 (540)
T PRK06164 164 LPDPA-PPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLG 242 (540)
T ss_pred ccccC-CcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHH
Confidence 11000 00000112234688999999999999999999999999988887778888999999999999999999988999
Q ss_pred HHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeec-CCCChhhHHHHHHhcc
Q 008848 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG-ETSNVDDDLWLSSKAW 496 (551)
Q Consensus 418 ~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gG-e~l~~~~~~~~~~~~~ 496 (551)
++..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.. ....++++++.+..+| .+...++.+++...
T Consensus 243 ~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 318 (540)
T PRK06164 243 ALAGGAPLVCEP-VFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR-- 318 (540)
T ss_pred HHhcCceEEecC-CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc--
Confidence 999999999876 568889999999999999999999999998762 3345688999887776 44555566666554
Q ss_pred CCceeccccccccccccccCCcCC--CCCcCccCCCC-CCceEEEEC-CCCCccCCCC
Q 008848 497 YNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTAT-MTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~-~g~~v~IlD-~~g~~vp~Gv 550 (551)
++++++.||+||++..++...... .....+.|.|+ +++.++|+| ++++++|.|.
T Consensus 319 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~ 376 (540)
T PRK06164 319 GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGE 376 (540)
T ss_pred CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCC
Confidence 478999999999986544433221 12334678876 899999999 5788998874
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=341.40 Aligned_cols=343 Identities=17% Similarity=0.157 Sum_probs=252.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
.++.+|+++|+.+.+. ++||+||+++++++|.+|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 29 ~~~~~p~~~a~~~~~~--------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l 100 (567)
T PLN02479 29 AAVVHPTRKSVVHGSV--------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCV 100 (567)
T ss_pred HHhhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEe
Confidence 3467999999998665 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc---------CCCceEEecCCCCC---CCCCCCCCCcc
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---------APLKAIVLPAIGND---VGIPLREQDLS 331 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---------~~~~~~vv~~~~~~---~~~~~~~~~~~ 331 (551)
+|.++.+++.+++++++++++++++.+. +....+... ....++++...... .......+...
T Consensus 101 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
T PLN02479 101 NIRLNAPTIAFLLEHSKSEVVMVDQEFF------TLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIE 174 (567)
T ss_pred ccccCHHHHHHHHhhcCceEEEEchhhh------hHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCccc
Confidence 9999999999999999999999987542 111111110 11122333211100 00011123445
Q ss_pred hHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchh
Q 008848 332 WKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411 (551)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 411 (551)
|++++..... .. ........+++++++|||||||.||||+++|+++..........++++.++++++..|++|..+
T Consensus 175 ~~~~~~~~~~---~~-~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~ 250 (567)
T PLN02479 175 YEKFLETGDP---EF-AWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNG 250 (567)
T ss_pred HHHHHhcccc---cc-ccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhh
Confidence 6666543221 00 0111223456788999999999999999999998766555555677889999999999999888
Q ss_pred hHHHHH-HHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCC-CCCCCccEEEeecCCCChhhHH
Q 008848 412 PVILFS-SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG-LDWTKIRSFASTGETSNVDDDL 489 (551)
Q Consensus 412 ~~~~~~-~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~-~~l~sLr~i~~gGe~l~~~~~~ 489 (551)
....+. +++.|.++++ . .+++..+++.++++++|++.++|++++.|.+...... .++++++.++++|+++++.+.+
T Consensus 251 ~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~ 328 (567)
T PLN02479 251 WCFTWTLAALCGTNICL-R-QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLF 328 (567)
T ss_pred HHHHHHHHhhcCceEec-c-CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHH
Confidence 644443 4555555544 3 4688999999999999999999999999987543222 2578999999999999999988
Q ss_pred HHHHhccCCceeccccccccccccccCC--cC-------C-CCCcCccCCCCCCce-EEEEC-CCCCccCCC
Q 008848 490 WLSSKAWYNAIIESCGGTELSSAYIQGS--LL-------Q-PQAFGAFSTATMTAG-LVILD-ECGVPYVRT 549 (551)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~--~~-------~-~~~~~~iG~p~~g~~-v~IlD-~~g~~vp~G 549 (551)
++.+. +.++++.||+||+++.++... +. . .....++|.|.+|.+ ++|+| ++++++|.|
T Consensus 329 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~ 398 (567)
T PLN02479 329 AMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPAD 398 (567)
T ss_pred HHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCC
Confidence 88754 478999999999854322211 00 0 011245788888886 89999 568888753
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=329.15 Aligned_cols=277 Identities=10% Similarity=0.072 Sum_probs=233.4
Q ss_pred EEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHH
Q 008848 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (551)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l 272 (551)
++++.++ ++||+||.++++++|++|. . +++|++|+|+++|++++++++|||+++|++++|+++..+.+++
T Consensus 1 ~~~~~~~--------~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~ 71 (414)
T PRK08308 1 MLIVNDE--------EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAA 71 (414)
T ss_pred CeEecCc--------eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHH
Confidence 3566665 9999999999999999985 6 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCC
Q 008848 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (551)
Q Consensus 273 ~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (551)
..++++++++++++++... . ... ...
T Consensus 72 ~~~~~~~~~~~~i~~~~~~------~---------------------------------~~~---------------~~~ 97 (414)
T PRK08308 72 IRMAKRAGCHGLLYGESDF------T---------------------------------KLE---------------AVN 97 (414)
T ss_pred HHHHHhCCCCEEEecCccc------c---------------------------------ccc---------------CCC
Confidence 9999999999999875210 0 000 001
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEEecCC
Q 008848 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGS 431 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~~~~ 431 (551)
..+++++||+|||||||.||||+++|+++.+.+......+.+..+|+++...|++|+++. ..++.++..|+++++.+ .
T Consensus 98 ~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~ 176 (414)
T PRK08308 98 YLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-N 176 (414)
T ss_pred CCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-C
Confidence 245789999999999999999999999999888877777888899999999999999887 56888999999999976 4
Q ss_pred CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecccccccccc
Q 008848 432 PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511 (551)
Q Consensus 432 ~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 511 (551)
.++..+++.++++++|++.++|+++..|.+.... ..+++.+++||+++++++.+.+++. ..+++|.||+||++.
T Consensus 177 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~ 250 (414)
T PRK08308 177 KNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGC 250 (414)
T ss_pred CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCC
Confidence 6788999999999999999999999999865321 2368899999999999998888776 368999999999975
Q ss_pred ccccCCcCCCCCcCccCCCCCCceEEEECCCC
Q 008848 512 AYIQGSLLQPQAFGAFSTATMTAGLVILDECG 543 (551)
Q Consensus 512 ~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g 543 (551)
... .. .....+++|+|++|+++++.++.+
T Consensus 251 ~~~-~~--~~~~~~~~G~p~~~~~~~~~~~~~ 279 (414)
T PRK08308 251 VSI-CP--DMKSHLDLGNPLPHVSVSAGSDEN 279 (414)
T ss_pred eee-cC--CCCCCCccCccCCCeEEEEecCCC
Confidence 332 11 123456899999999999986543
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=327.57 Aligned_cols=309 Identities=20% Similarity=0.163 Sum_probs=250.8
Q ss_pred cHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeec
Q 008848 211 TYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (551)
Q Consensus 211 TY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~ 288 (551)
||.||.++++++|++|.+ . +++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 899999999999999999 7 99999999999999999999999999999999999999999999999999999999987
Q ss_pred ceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCC
Q 008848 289 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368 (551)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTT 368 (551)
........ .......+.. .+......... .........++++++++||||||
T Consensus 81 ~~~~~~~~----------~~~~~~~~~~--------------~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTt 132 (408)
T TIGR01733 81 ALASRLAG----------LVLPIILVDP--------------LELAALDDAPA----PPPPDAPSGPDDLAYVIYTSGST 132 (408)
T ss_pred chhhhccc----------cCCceEEech--------------hhhhhcccccc----cccccCCCCCCCcEEEEEcCCCC
Confidence 64211110 0111111110 00011100000 00011113468899999999999
Q ss_pred CCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCC--hhhHHHHHHHcCC
Q 008848 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGV 446 (551)
Q Consensus 369 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~--~~~~~~~i~~~~v 446 (551)
|.||+|+++|+++.+........+.++++|++++..|++|..+++.++.++..|+++++++.... +..+.+.++++++
T Consensus 133 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
T TIGR01733 133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPV 212 (408)
T ss_pred CCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCc
Confidence 99999999999999888888788889999999999999999999889999999999999875433 6788999999999
Q ss_pred cEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcC--CCC--
Q 008848 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQ-- 522 (551)
Q Consensus 447 t~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~-- 522 (551)
|.+.++|++++.|.+... ..+++||.+++||+++++++.+++.+.++++.+++.||+||++..+...... ...
T Consensus 213 t~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~ 289 (408)
T TIGR01733 213 TVLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRE 289 (408)
T ss_pred eEEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCc
Confidence 999999999999987643 4588999999999999999999999988778899999999998655322111 111
Q ss_pred CcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 523 AFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 523 ~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+..++|+|+++++++|+|+++++++.|.
T Consensus 290 ~~~~~G~~~~~~~~~i~~~~~~~~~~g~ 317 (408)
T TIGR01733 290 SPVPIGRPLANTRLYVLDDDLRPVPVGV 317 (408)
T ss_pred cccccCcccCCceEEEECCCCCCCCCCC
Confidence 2678999999999999999999998873
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=370.37 Aligned_cols=331 Identities=18% Similarity=0.180 Sum_probs=253.8
Q ss_pred CCC-CCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC
Q 008848 187 RKE-DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (551)
Q Consensus 187 ~~~-pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~ 265 (551)
+++ |+++|+.+.+. +++||+||+++++++|++|++-+++||+|+++++|+++++++++||+++|++++|+||
T Consensus 642 ~~~~~~~~ai~~~~~-------~~~Ty~el~~~~~~lA~~L~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~ 714 (1140)
T PRK06814 642 KIHGFKKLAVEDPVN-------GPLTYRKLLTGAFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINF 714 (1140)
T ss_pred HHcCCCCeEeECCCC-------CccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCC
Confidence 455 46788876332 2899999999999999999633999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC--CceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
.++.+++.+++++++++++++++.+....+ .....+... ..++.++..... . .....+.+.......
T Consensus 715 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~~~~-- 783 (1140)
T PRK06814 715 SAGIANILSACKAAQVKTVLTSRAFIEKAR----LGPLIEALEFGIRIIYLEDVRAQ--I---GLADKIKGLLAGRFP-- 783 (1140)
T ss_pred CCCHHHHHHHHHHcCCCEEEecHHHHhhhc----chhHHHHhccCceEEEehHhhcc--C---ChHHHHHHHhhccCC--
Confidence 999999999999999999999875431110 011111111 122222211100 0 000011111111110
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G 422 (551)
........++|+++|+|||||||.||||+++|+++.+........++++++|++++..|++|..+. ..++.++..|
T Consensus 784 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 860 (1140)
T PRK06814 784 ---LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSG 860 (1140)
T ss_pred ---ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcC
Confidence 001113467999999999999999999999999999888877778889999999999999999887 6688899999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceec
Q 008848 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (551)
Q Consensus 423 ~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (551)
+++++.+...+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||++++++.+++.+.++ ++++|
T Consensus 861 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~-~~~~~ 937 (1140)
T PRK06814 861 VKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKFG-IRILE 937 (1140)
T ss_pred CEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHhC-CcEEe
Confidence 99999875456677889999999999999999999987653 3456889999999999999999998888775 78999
Q ss_pred cccccccccccccCCcCCCCCcCccCCCCCCceEEEECCC
Q 008848 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542 (551)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~ 542 (551)
.||+||++..++.... ...+.+++|+|++|++++++|..
T Consensus 938 ~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~g~~~~~~~~~ 976 (1140)
T PRK06814 938 GYGVTETAPVIALNTP-MHNKAGTVGRLLPGIEYRLEPVP 976 (1140)
T ss_pred ccccccccceEEecCC-CCCCCCcCCccCCCCeEEEeecC
Confidence 9999999865443322 23456799999999999998754
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=334.44 Aligned_cols=342 Identities=17% Similarity=0.136 Sum_probs=250.1
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++.+|+++|+.+.+. .+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 ~~~~~~~~a~~~~~~--------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 99 (545)
T PRK08162 28 AEVYPDRPAVIHGDR--------RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLN 99 (545)
T ss_pred HHHCCCCeEEEECCe--------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccc
Confidence 368999999998765 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
|.++.+++.+++++++++.++++..+. ....+.....+. ..+++.............+..+++.+......
T Consensus 100 ~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 171 (545)
T PRK08162 100 TRLDAASIAFMLRHGEAKVLIVDTEFA------EVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDP-- 171 (545)
T ss_pred cccChHHHHHHHHhCCCeEEEEccchh------hHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCc--
Confidence 999999999999999999999987542 112222222222 23333321111000001123345555443211
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
..........+++++|+|||||||.||||+++|+++..........+.+..++++++..|++|..+....+...+.|+
T Consensus 172 --~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g 249 (545)
T PRK08162 172 --DFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAG 249 (545)
T ss_pred --cccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHcc
Confidence 001111223467899999999999999999999987666555555667888899999999999888654444445666
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
+.++.. .+++..+++.|+++++|++.++|++++.|++........+.+.+.++++|+++++++.+++... ++++++.
T Consensus 250 ~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~ 326 (545)
T PRK08162 250 TNVCLR-KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHV 326 (545)
T ss_pred EEEEeC-CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeec
Confidence 666554 5788999999999999999999999999987644333345566777899999999988887653 4789999
Q ss_pred ccccccccccccCCcC------C----CCCcCccCCCCC-CceEEEECC-CCCccCC
Q 008848 504 CGGTELSSAYIQGSLL------Q----PQAFGAFSTATM-TAGLVILDE-CGVPYVR 548 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~------~----~~~~~~iG~p~~-g~~v~IlD~-~g~~vp~ 548 (551)
||+||+++.+...... . .....++|.+.+ +..++|+|+ +++++|.
T Consensus 327 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~ 383 (545)
T PRK08162 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA 383 (545)
T ss_pred ccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCC
Confidence 9999986433322110 0 112345677765 346899994 7888875
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=333.40 Aligned_cols=318 Identities=19% Similarity=0.106 Sum_probs=246.3
Q ss_pred EecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEee
Q 008848 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287 (551)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~ 287 (551)
.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++++++
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~ 90 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS 90 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999998
Q ss_pred cceeccCccccchhHHhhcCC--CceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecC
Q 008848 288 DFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365 (551)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~--~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTS 365 (551)
+... .......+... ...+.+.... ......|++....... ......++.++++|||
T Consensus 91 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TS 149 (502)
T PRK08276 91 AALA------DTAAELAAELPAGVPLLLVVAGP-------VPGFRSYEEALAAQPD--------TPIADETAGADMLYSS 149 (502)
T ss_pred cchh------hHHHHHhhhccccccEEEEeCCC-------CCccccHHHHHhcCCC--------CCCCCCCcceEEEECC
Confidence 7532 11122222221 1222221110 0122345544332211 1122456789999999
Q ss_pred CCCCCCceEEecchhhHHHH------HHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCChhhHHH
Q 008848 366 GTTGEPKAIPWTQLSSIRCT------AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK 439 (551)
Q Consensus 366 GTTG~PKgV~~sh~~l~~~~------~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~ 439 (551)
||||.||||+++|+++.... ...........++++++..|++|..+....+.++..|+++++.+ .+++..+++
T Consensus 150 GtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~ 228 (502)
T PRK08276 150 GTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME-KFDAEEALA 228 (502)
T ss_pred CCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcC-CCCHHHHHH
Confidence 99999999999988754322 11222233357789999999999888876678999999998876 578899999
Q ss_pred HHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCC
Q 008848 440 FVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS 517 (551)
Q Consensus 440 ~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 517 (551)
.++++++|++.++|+++..+++... ....+++++|.+++||++++.++.+++.+.++ ..+++.||+||++..+....
T Consensus 229 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~~yG~tE~~~~~~~~~ 307 (502)
T PRK08276 229 LIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG-PIIHEYYASSEGGGVTVITS 307 (502)
T ss_pred HHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC-cHhhhhcccccccceeEecC
Confidence 9999999999999999999887543 23456889999999999999999999988775 67999999999986443332
Q ss_pred cCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 518 LLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 518 ~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.......+++|+|+ ++.++|+|++++++|.|.
T Consensus 308 ~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~ 339 (502)
T PRK08276 308 EDWLAHPGSVGKAV-LGEVRILDEDGNELPPGE 339 (502)
T ss_pred ccccccCCCcceec-ccEEEEECCCCCCCcCCC
Confidence 22234557899999 889999999999998773
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=338.63 Aligned_cols=331 Identities=18% Similarity=0.112 Sum_probs=245.8
Q ss_pred CCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC
Q 008848 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (551)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~ 265 (551)
+.+|+.+ ++..++ +.++.+||+||+++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|+|+
T Consensus 32 ~~~~~~~-~~~~~~----~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~ 106 (579)
T PRK09192 32 LGEAGMN-FYDRRG----QLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPL 106 (579)
T ss_pred ccCCceE-EEecCC----CEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccC
Confidence 4566554 443221 2346899999999999999999999 999999999999999999999999999999999987
Q ss_pred CCC-------HHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhcc
Q 008848 266 SFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (551)
Q Consensus 266 ~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~ 338 (551)
.++ .+++.+++++++++++++++... +.......... ... ..+++++...
T Consensus 107 ~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~------~~~~~~~~~~~-~~~----------------~~~~~~~~~~ 163 (579)
T PRK09192 107 PMGFGGRESYIAQLRGMLASAQPAAIITPDELL------PWVNEATHGNP-LLH----------------VLSHAWFKAL 163 (579)
T ss_pred CcccccchHHHHHHHHHHHhcCCCEEEeChHHH------HHHHHhhcccc-ccc----------------eeehhhhccc
Confidence 553 68999999999999999987532 11111110000 001 1123333221
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh-hcCCCCCCEEEEecCcccchhhHH-HH
Q 008848 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LF 416 (551)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~-~~ 416 (551)
... ........+++++||+|||||||.||||+++|++++..+..... .+++.++|+++++.|++|+.+... ++
T Consensus 164 ~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 238 (579)
T PRK09192 164 PEA-----DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLL 238 (579)
T ss_pred CCC-----ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHH
Confidence 111 01112345689999999999999999999999999888776666 788999999999999999999864 56
Q ss_pred HHHHhCCEEEEecC-C--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcC---ccCCCCCCCccEEEeecCCCChhhHHH
Q 008848 417 SSFLNGATLALYQG-S--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN---CLEGLDWTKIRSFASTGETSNVDDDLW 490 (551)
Q Consensus 417 ~~l~~G~~lvl~~~-~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~---~~~~~~l~sLr~i~~gGe~l~~~~~~~ 490 (551)
.++..|+++++.+. . .++..+++.+.+++++++..+|.++..+.... .....+++++|.+++||+++++.+.+.
T Consensus 239 ~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~ 318 (579)
T PRK09192 239 TPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQ 318 (579)
T ss_pred HHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHH
Confidence 67899999977652 1 25778999999999998776665555544321 122356889999999999999999888
Q ss_pred HHHhccC-----CceeccccccccccccccCCcCC---------------------------CCCcCccCCCCCCceEEE
Q 008848 491 LSSKAWY-----NAIIESCGGTELSSAYIQGSLLQ---------------------------PQAFGAFSTATMTAGLVI 538 (551)
Q Consensus 491 ~~~~~~~-----~~l~n~YG~TE~~~~~~~~~~~~---------------------------~~~~~~iG~p~~g~~v~I 538 (551)
+.+.++. ..+++.||+||+++.++...... .....++|+|++|++++|
T Consensus 319 ~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i 398 (579)
T PRK09192 319 FAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEI 398 (579)
T ss_pred HHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEE
Confidence 8776531 35899999999976544322110 011257999999999999
Q ss_pred ECCCCCccCCCC
Q 008848 539 LDECGVPYVRTF 550 (551)
Q Consensus 539 lD~~g~~vp~Gv 550 (551)
+|++++++|.|.
T Consensus 399 ~d~~~~~~~~g~ 410 (579)
T PRK09192 399 RNEAGMPLPERV 410 (579)
T ss_pred ECCCCCCCCCCC
Confidence 999999998874
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=326.94 Aligned_cols=291 Identities=15% Similarity=0.177 Sum_probs=237.9
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+++.+. .+||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|++
T Consensus 13 a~~~~~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~ 84 (458)
T PRK09029 13 AQVRPQAIALRLNDE--------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLN 84 (458)
T ss_pred HHhCCCceeeecCCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecC
Confidence 468999999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
+..+.+++..++++++++++++++.... ...+. ...+. ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~------------------------~~~~~----~~~---- 125 (458)
T PRK09029 85 PQLPQPLLEELLPSLTLDFALVLEGENT-------FSALT------------------------SLHLQ----LVE---- 125 (458)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCcccc-------hhhcc------------------------ccccc----ccc----
Confidence 9999999999999999999999875310 00000 00000 000
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCE
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (551)
........++++++++|||||||.||||+++|++++..+......+++.++|+++...|++|.++...++.+|+.|++
T Consensus 126 --~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~ 203 (458)
T PRK09029 126 --GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGAT 203 (458)
T ss_pred --ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCce
Confidence 011123457889999999999999999999999999888877777889999999999999999998767788999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 425 lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+++.+. ..+++.+. ++|.+.++|+++..+...... ..++|.+++||+++++.+.+++... +.++++.|
T Consensus 204 v~~~~~----~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~Y 271 (458)
T PRK09029 204 LVVRDK----QPLEQALA--GCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGY 271 (458)
T ss_pred EEeCCh----HHHHHHHh--hceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccc
Confidence 998663 45667773 799999999999988865322 3479999999999999998888754 48899999
Q ss_pred cccccccccccCCcCCCCCcCccCCCCCCceEEEEC
Q 008848 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540 (551)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD 540 (551)
|+||++...+... .....++|+|++|++++|+|
T Consensus 272 G~tE~~~~~~~~~---~~~~~~~G~~~~~~~~~i~~ 304 (458)
T PRK09029 272 GLTEMASTVCAKR---ADGLAGVGSPLPGREVKLVD 304 (458)
T ss_pred cccccCcceeccC---CCCCCCCCCCCCCCEEEEeC
Confidence 9999975433221 12235699999999999987
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=334.20 Aligned_cols=327 Identities=17% Similarity=0.100 Sum_probs=250.3
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+...|+.+|+...+. .+.+||.||+++++++|++|.+. +++||+|+|+++|+++++++++||+++|++++|++
T Consensus 12 ~~~~~~~~~~~~~~~------~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~ 85 (545)
T PRK07768 12 ARTSPRGMVTGEPDA------PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLH 85 (545)
T ss_pred hhCCCcceEEecCCC------ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccC
Confidence 456799998866443 24899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 265 DSFAAREI-------ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 265 ~~~~~~~l-------~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
+..+.+++ .++++.++++.+++++..... ...+ ... . .....++++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~-~~~--~----------------~~~~~~~~l~~ 140 (545)
T PRK07768 86 QPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAA------APVL-EEK--G----------------IRVLTVADLLA 140 (545)
T ss_pred CCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhh------hhhh-ccc--C----------------Cceeehhhhcc
Confidence 98886554 456777899999998753210 0000 000 0 01223445443
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCC-CEEEEecCcccchhhHH-H
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG-DVYCWPTNLGWVMGPVI-L 415 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~-d~~l~~~~~~~~~~~~~-~ 415 (551)
.... ......++++++|+|||||||+||||+++|++++.........+++.++ |++++..|++|+.+... +
T Consensus 141 ~~~~-------~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 213 (545)
T PRK07768 141 ADPI-------DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFL 213 (545)
T ss_pred cCCC-------CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHH
Confidence 2111 1223457899999999999999999999999998888777777788776 89999999999998854 5
Q ss_pred HHHHHhCCEEEEecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcC----ccCCCCCCCccEEEeecCCCChhhH
Q 008848 416 FSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----CLEGLDWTKIRSFASTGETSNVDDD 488 (551)
Q Consensus 416 ~~~l~~G~~lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~----~~~~~~l~sLr~i~~gGe~l~~~~~ 488 (551)
+.++..|+++++++.. .++..++++++++++|++..+|.++..+.+.. .....+++++|.+++||++++++..
T Consensus 214 ~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~ 293 (545)
T PRK07768 214 TVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADV 293 (545)
T ss_pred HHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHH
Confidence 6789999999987532 25678899999999999988888776665421 1124668899999999999999998
Q ss_pred HHHHHh---cc--CCceeccccccccccccccCCcCC-------------------------CCCcCccCCCCCCceEEE
Q 008848 489 LWLSSK---AW--YNAIIESCGGTELSSAYIQGSLLQ-------------------------PQAFGAFSTATMTAGLVI 538 (551)
Q Consensus 489 ~~~~~~---~~--~~~l~n~YG~TE~~~~~~~~~~~~-------------------------~~~~~~iG~p~~g~~v~I 538 (551)
+++.+. ++ ...+++.||+||++..++...... ....+++|+|++|++++|
T Consensus 294 ~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i 373 (545)
T PRK07768 294 EDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRV 373 (545)
T ss_pred HHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEE
Confidence 887653 33 235999999999976433221110 113458999999999999
Q ss_pred ECCCCCccCCCC
Q 008848 539 LDECGVPYVRTF 550 (551)
Q Consensus 539 lD~~g~~vp~Gv 550 (551)
+|++|+++++|.
T Consensus 374 ~~~~~~~~~~g~ 385 (545)
T PRK07768 374 VDEDGQVLPPRG 385 (545)
T ss_pred ECCCCCCCCCCC
Confidence 999999998873
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=324.48 Aligned_cols=283 Identities=13% Similarity=0.034 Sum_probs=223.8
Q ss_pred EecHHHHHHHHHHHHHHHHhh-c-CCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEe
Q 008848 209 LMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286 (551)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v-~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~ 286 (551)
-+.|+||+++++++|++|++. + ++|++|+++++|+++++++++||+++|++++|++|.++.+++++++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 478999999999999999999 7 67999999999999999999999999999999999999999999999999999998
Q ss_pred ecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCC
Q 008848 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366 (551)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSG 366 (551)
++.... . . . . . ... ......++++++++||||
T Consensus 99 ~~~~~~------~---~----------~-------------~-----~----~~~-------~~~~~~~~~~~~i~~TSG 130 (452)
T PRK07445 99 LDQLKL------S---H----------P-------------P-----P----LPS-------QGILPNLETGWIMIPTGG 130 (452)
T ss_pred cCcccc------c---c----------C-------------C-----C----CCc-------cccCCCCCCcEEEEeCCC
Confidence 764210 0 0 0 0 0 000 001124588999999999
Q ss_pred CCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCC
Q 008848 367 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446 (551)
Q Consensus 367 TTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~v 446 (551)
|||.||||+++|+++...+.+....+++.+ ++.++..|++|.+++..++.+++.|+++++.+.. ..........++++
T Consensus 131 TTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~-~~~~~~~~~~~~~~ 208 (452)
T PRK07445 131 SSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQELPPNPSD 208 (452)
T ss_pred CCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChH-hccchhhhhhhcCc
Confidence 999999999999999887776666666655 4678889999999988888999999999997631 22222344567899
Q ss_pred cEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCC-CCCcC
Q 008848 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFG 525 (551)
Q Consensus 447 t~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~ 525 (551)
|++.++|++++.+.+.. ..++++||.+++||+++++++.+.+.. . +.+++|.||+||++..++...+.. ....+
T Consensus 209 t~~~~vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 283 (452)
T PRK07445 209 FFLSLVPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDDFLAGNN 283 (452)
T ss_pred eEEEehHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchhhccCCC
Confidence 99999999999988632 234789999999999999998887764 3 478999999999875433322211 12456
Q ss_pred ccCCCCCCceEEEEC-CCCCcc
Q 008848 526 AFSTATMTAGLVILD-ECGVPY 546 (551)
Q Consensus 526 ~iG~p~~g~~v~IlD-~~g~~v 546 (551)
++|+|++|++++|++ +.|+.+
T Consensus 284 ~~G~~~p~~~v~i~~g~~Gel~ 305 (452)
T PRK07445 284 SSGQVLPHAQITIPANQTGNIT 305 (452)
T ss_pred cCCccCCCCeEEEcCCCcceEE
Confidence 899999999999973 445543
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=318.14 Aligned_cols=285 Identities=19% Similarity=0.216 Sum_probs=231.7
Q ss_pred cHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecc
Q 008848 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (551)
Q Consensus 211 TY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~ 289 (551)
||+||+++++++|+.|++. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 8999999999999999999 999999999999999999999999999999999999999999999999999999999875
Q ss_pred eeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 008848 290 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369 (551)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG 369 (551)
... ... . ...+.++...... ..........+++++++|||||||
T Consensus 81 ~~~--~~~--------------~----------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG 124 (436)
T TIGR01923 81 LEE--KDF--------------Q----------------ADSLDRIEAAGRY----ETSLSASFNMDQIATLMFTSGTTG 124 (436)
T ss_pred ccc--cce--------------e----------------ecchHhhhhcccc----cccccccCCcCceEEEEeCCCCCC
Confidence 310 000 0 0011111111110 001112345688999999999999
Q ss_pred CCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEE
Q 008848 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 449 (551)
Q Consensus 370 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l 449 (551)
.||||+++|+++...+.+....++++++|++++..|++|..++..++.++..|+++++.+. . ..+++.|+++++|++
T Consensus 125 ~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~--~~~~~~l~~~~~t~~ 201 (436)
T TIGR01923 125 KPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK-F--NQLLEMIANERVTHI 201 (436)
T ss_pred CCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecch-H--HHHHHHHHHhCCeEE
Confidence 9999999999999888888888899999999999999999888778899999999999763 2 388999999999999
Q ss_pred EecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCC
Q 008848 450 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529 (551)
Q Consensus 450 ~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~ 529 (551)
.++|+++..|.+.... .+++|.+++|||++++++.++++.. +++++|.||+||++..++...........++|+
T Consensus 202 ~~~P~~l~~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 275 (436)
T TIGR01923 202 SLVPTQLNRLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARPDVGR 275 (436)
T ss_pred EeHHHHHHHHHhCcCC----CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccccCCCc
Confidence 9999999999876432 2689999999999999998887653 588999999999976544333222222235999
Q ss_pred CCCCceEEE-EC
Q 008848 530 ATMTAGLVI-LD 540 (551)
Q Consensus 530 p~~g~~v~I-lD 540 (551)
|+++++++| .|
T Consensus 276 ~~~~~~~~i~~~ 287 (436)
T TIGR01923 276 PLAGREIKIKVD 287 (436)
T ss_pred cCCCcEEEEEeC
Confidence 999999999 55
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=330.72 Aligned_cols=334 Identities=14% Similarity=0.131 Sum_probs=238.3
Q ss_pred CCCCCCceEEEEecCC-CCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+..+|+++|+++.+.. ...+..+++||+||.++++++|++|.+.-++||+|+|+++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~ 90 (578)
T PRK05850 11 ASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLS 90 (578)
T ss_pred HhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccHHHHHHHHHHcCceEEecC
Confidence 4689999999975421 111234589999999999999999998833799999999999999999999999999999999
Q ss_pred C---CCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcC---C-CceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 265 D---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---P-LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 265 ~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~-~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
+ ..+.+++.++|++++++++++++.... ......... . ..++.+.. .++..
T Consensus 91 ~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 148 (578)
T PRK05850 91 VPQGGAHDERVSAVLRDTSPSVVLTTSAVVD------DVTEYVAPQPGQSAPPVIEVDL----------------LDLDS 148 (578)
T ss_pred CCCccchHHHHHHHHHhcCCCEEEEcHHHHH------HHHHHHhhcccccccceEeecc----------------ccccc
Confidence 7 457899999999999999999875321 111111000 0 01111100 00000
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh-cC-----CCCCCEEEEecCcccchh
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-ID-----LKVGDVYCWPTNLGWVMG 411 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~-----~~~~d~~l~~~~~~~~~~ 411 (551)
.. ........++++++|+|||||||.||||+++|+++++.+...... +. ...++++++..|++|+.+
T Consensus 149 --~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 221 (578)
T PRK05850 149 --PR-----GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMG 221 (578)
T ss_pred --CC-----ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCch
Confidence 00 001123356899999999999999999999999998776544332 22 356789999999999998
Q ss_pred h-HHHHHHHHhCCEEEEecCC---CChhhHHHHHHHcCCcEEEecHHHH-HHHHhc---CccCCCCCCCccEEEeecCCC
Q 008848 412 P-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLV-KAWRNT---NCLEGLDWTKIRSFASTGETS 483 (551)
Q Consensus 412 ~-~~~~~~l~~G~~lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l-~~l~~~---~~~~~~~l~sLr~i~~gGe~l 483 (551)
. ..++.+++.|+++++.+.. .++..+++++++++++.+ .+|+++ ..+... ......+++++|.+++||+++
T Consensus 222 ~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~ 300 (578)
T PRK05850 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERV 300 (578)
T ss_pred hHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCC
Confidence 7 4588999999999998632 267889999999999865 556554 333321 111234678999999999999
Q ss_pred ChhhHHHHHHhcc-----CCceeccccccccccccccCCcCCC------------------------CCcCccCCCCCCc
Q 008848 484 NVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP------------------------QAFGAFSTATMTA 534 (551)
Q Consensus 484 ~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~------------------------~~~~~iG~p~~g~ 534 (551)
++++.+++.+.++ ...+++.||+||++..+.......+ ....++|+|. +.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~ 379 (578)
T PRK05850 301 HPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SP 379 (578)
T ss_pred CHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CC
Confidence 9999988877653 2468999999998754332211100 0112456665 68
Q ss_pred eEEEECC-CCCccCCCC
Q 008848 535 GLVILDE-CGVPYVRTF 550 (551)
Q Consensus 535 ~v~IlD~-~g~~vp~Gv 550 (551)
+++|+|+ +++++|+|.
T Consensus 380 ~~~ivd~~~~~~~~~g~ 396 (578)
T PRK05850 380 TVRIVDPDTCIECPAGT 396 (578)
T ss_pred EEEEEcCCCCcCCCCCC
Confidence 9999994 588999884
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=299.89 Aligned_cols=308 Identities=21% Similarity=0.172 Sum_probs=244.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+|+++|+++|+++.+.. +++||+|++++++++|+.|..+ ++.||.|+++|+|++|++..+||.+|+|++..-|
T Consensus 86 ~vrr~p~k~aii~~~~~------~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~i 159 (649)
T KOG1179|consen 86 QVRRQPDKPAIIYEGPF------QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFI 159 (649)
T ss_pred HHHhCCCccEEEEeCCC------ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeee
Confidence 67899999999998741 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC-CceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
+++...+-|.+-|.-++++.+|++.++.. ...++.+... ..+.+....... .+++..++...++....+
T Consensus 160 NtNlR~~~LlHsi~~s~aralv~~~el~~------~~~e~~~~l~~~~i~~~~~~~~~----~~~g~~~L~~~l~~~~~~ 229 (649)
T KOG1179|consen 160 NTNLRGEPLLHSITVSGARALVVGPELLN------ALEEILPLLIKNGIHVFSLGPTS----VPDGIESLLAKLSAAPKH 229 (649)
T ss_pred ccccccchhhhhhhhcCceEEEECHHHHH------HHHhcchhhhhccceEEecCCCC----CCchHHHHHHhhcccccC
Confidence 99999999999999999999999987531 1222211111 122232221111 112233333333333221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHh
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLN 421 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~ 421 (551)
+.+ ........-.++++.||||||||.||..+++|.-+..........++++++|+++..+|++|.++. ..+..++..
T Consensus 230 ~vp-~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~ 308 (649)
T KOG1179|consen 230 PVP-VSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLH 308 (649)
T ss_pred CCC-cccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhc
Confidence 101 012234445789999999999999999999999887766656677899999999999999998775 678899999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+|+|+-. +++...||+.+.+|++|+..-.--+.+.|++.+..+...-..+|..+--| +.++.++.|.++|+..+|.
T Consensus 309 GaT~Vlrk-KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~Fv~RFg~~~Ig 385 (649)
T KOG1179|consen 309 GATVVLRK-KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIG 385 (649)
T ss_pred CceEEEec-ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHHHHHHcCCCeEE
Confidence 99999965 78999999999999999999999999999998766555567888876444 7799999999999977899
Q ss_pred ccccccccccc
Q 008848 502 ESCGGTELSSA 512 (551)
Q Consensus 502 n~YG~TE~~~~ 512 (551)
+.||+||....
T Consensus 386 E~YgaTEgn~~ 396 (649)
T KOG1179|consen 386 EFYGATEGNSN 396 (649)
T ss_pred EEeccccCcce
Confidence 99999998754
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=291.75 Aligned_cols=332 Identities=17% Similarity=0.167 Sum_probs=253.1
Q ss_pred CCceEecHHHHHHHHHHHHHHHHhh-cCCCCE-EEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCce
Q 008848 205 SAVNLMTYKELREQVMLVANALDTM-FSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAK 282 (551)
Q Consensus 205 ~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~-V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~ 282 (551)
+++..+||.|+.+++.++|++|.+. ++++++ |+|+++.+.+|+++.+||++.+...|.+...+..+-+.+-|++++++
T Consensus 85 g~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~ 164 (678)
T KOG1180|consen 85 GDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETEST 164 (678)
T ss_pred cceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccce
Confidence 4667999999999999999999999 997666 99999999999999999999999999999999999999999999999
Q ss_pred EEEeecceeccCccccchhHHhhcCCCceEEecCCC--CCC---CCC----CCCCCcchHHhhccCCCCCCCCCCCCCCC
Q 008848 283 GIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG--NDV---GIP----LREQDLSWKDFLSSVDYHPRPNYYSPVYN 353 (551)
Q Consensus 283 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~--~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (551)
.|+|+.+. ++.+......++....++.... ... ... .+....++++++..+.... .++.+.
T Consensus 165 ~i~T~~~L------L~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~----~~~~~P 234 (678)
T KOG1180|consen 165 AIFTDSEL------LPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE----IPPHPP 234 (678)
T ss_pred EEEeCHHH------HHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC----CCCCCC
Confidence 99999864 2333334444444444444332 111 111 1234577888888776521 233444
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhc-CCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP 432 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~ 432 (551)
.|+|+|.|||||||||.|||||++|+|+++.+....... .+++.|+++.++|++|..-+..=+.++..|+++=..+...
T Consensus 235 ~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~T 314 (678)
T KOG1180|consen 235 KPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLT 314 (678)
T ss_pred CCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcce
Confidence 779999999999999999999999999999887766655 6899999999999999988865567889999886644221
Q ss_pred --C-hhh----HHHHHHHcCCcEEEecHHHHHHHHhcC------------------------ccC---------------
Q 008848 433 --L-ERS----FGKFVQDAGVTVLGTVPSLVKAWRNTN------------------------CLE--------------- 466 (551)
Q Consensus 433 --~-~~~----~~~~i~~~~vt~l~~~Ps~l~~l~~~~------------------------~~~--------------- 466 (551)
| ... --..+...++|+|.++|.++.++.+.. ...
T Consensus 315 Ltdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFk 394 (678)
T KOG1180|consen 315 LTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFK 394 (678)
T ss_pred ecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHH
Confidence 1 111 123466889999999999998775430 000
Q ss_pred ---CCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-C-
Q 008848 467 ---GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-E- 541 (551)
Q Consensus 467 ---~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~- 541 (551)
..--..||.+++||+|++++..+.+-..+. +++.++||.||++...+...+. .-..+.+|.|++-++++++| +
T Consensus 395 KIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C-~Pv~qGYGLTEtca~~tv~e~~-d~~~g~vG~pl~c~eiKLvdw~E 472 (678)
T KOG1180|consen 395 KIRALLGGNLRYILSGGAPLSPDTQRFMNICFC-CPVLQGYGLTETCAAATVLEPE-DFSTGRVGAPLPCCEIKLVDWEE 472 (678)
T ss_pred HHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc-ccccccccccchhcccEecChh-hcccccccCCccceEEEEEEhhh
Confidence 001136999999999999999887766654 7999999999998765544432 33457899999999999999 3
Q ss_pred -----CCCccCCC
Q 008848 542 -----CGVPYVRT 549 (551)
Q Consensus 542 -----~g~~vp~G 549 (551)
.++| |.|
T Consensus 473 gGY~~~~~P-PrG 484 (678)
T KOG1180|consen 473 GGYFAKNKP-PRG 484 (678)
T ss_pred cCccCCCCC-CCc
Confidence 2466 766
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=320.51 Aligned_cols=326 Identities=12% Similarity=0.063 Sum_probs=232.7
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
.++++|+++|+.+... .+.++.+||+|+.++++++|++|+++ +++||+|+|+++|++||+++.+||+++|++.||+
T Consensus 436 ~a~~~pd~~al~~~~~---~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPl 512 (1452)
T PTZ00297 436 SVTRHSTFRCLGQTSE---SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPL 512 (1452)
T ss_pred HHHHCCCCeEEEEecc---CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeC
Confidence 3478899999974311 13456899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCC-CC-CCC--CCCCCcchHHhhccC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN-DV-GIP--LREQDLSWKDFLSSV 339 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~-~~-~~~--~~~~~~~~~~~~~~~ 339 (551)
++ +.+++.+++++++++++|++.... +.+..+....-..+++++.... .. ... ......+|++++..+
T Consensus 513 y~--t~~eL~yIL~~S~akvVfv~~~~l------~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G 584 (1452)
T PTZ00297 513 VG--KGSTMRTLIDEHKIKVVFADRNSV------AAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKG 584 (1452)
T ss_pred CC--CHHHHHHHHHhcCCcEEEEchhHH------HHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcC
Confidence 75 467999999999999999986432 1122221111122333321100 00 000 011245688888765
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEe---cCCCCCCCceEEecchhhHHHHHHhhhhc---CCCCCCEEEEecCcccchhhH
Q 008848 340 DYHPRPNYYSPVYNPVDAVVNILF---SSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYCWPTNLGWVMGPV 413 (551)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~iiy---TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~~~~~~~~~~ 413 (551)
... . ........++|++.|+| ||||||.||||++||+|++..+....... ...++|++++++|++|..+..
T Consensus 585 ~~~--~-~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~ 661 (1452)
T PTZ00297 585 RLC--P-VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRV 661 (1452)
T ss_pred ccc--C-ccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHH
Confidence 321 1 11122346789999996 99999999999999999998887654322 456789999999999998876
Q ss_pred HHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc--------------------------CC
Q 008848 414 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--------------------------EG 467 (551)
Q Consensus 414 ~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--------------------------~~ 467 (551)
..+.+++.|+++.. +++..+++.|+++++|++.++|+++..+.+.... ..
T Consensus 662 ~~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~ 737 (1452)
T PTZ00297 662 FVLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHR 737 (1452)
T ss_pred HHHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCC
Confidence 66778999999864 3578999999999999999999999877542100 00
Q ss_pred CC----------------CCCccEEEeecC--CCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCC
Q 008848 468 LD----------------WTKIRSFASTGE--TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529 (551)
Q Consensus 468 ~~----------------l~sLr~i~~gGe--~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~ 529 (551)
.. -..+|.+++||. +++..+. . ++++..+||.||+. +...+ ......|+
T Consensus 738 ~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~-----~--~i~i~~g~glTE~~---~~~~~---~~~~~~G~ 804 (1452)
T PTZ00297 738 RDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL-----E--HISVCYVPCLREVF---FLPSE---GVFCVDGT 804 (1452)
T ss_pred CCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh-----C--CceEEEecceEEee---eecCC---CCcccCCe
Confidence 00 036888998873 4443222 2 46788899999953 22222 12223499
Q ss_pred CCCCceEEEECC
Q 008848 530 ATMTAGLVILDE 541 (551)
Q Consensus 530 p~~g~~v~IlD~ 541 (551)
|+||++++|.|.
T Consensus 805 PlpgvEvKI~~~ 816 (1452)
T PTZ00297 805 PAPSLQVDLEPF 816 (1452)
T ss_pred ecCceEEEEccc
Confidence 999999999863
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=215.80 Aligned_cols=217 Identities=16% Similarity=0.131 Sum_probs=159.1
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
+++++|+++|+++.+++ .++.+++||+||.++++++|+.|++ . +++||+|+|+++|+++++++++||+++|++++|
T Consensus 5 ~~~~~p~~~al~~~~~~--~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp 82 (227)
T TIGR03089 5 LLAADPASPRLTFYDDA--TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVL 82 (227)
T ss_pred hhhhCCCCcEEEEEcCC--CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEe
Confidence 34688999999864321 1123579999999999999999998 8 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCC--CCCCCCCCCCCCcchHHhhccCC
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI--GNDVGIPLREQDLSWKDFLSSVD 340 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~--~~~~~~~~~~~~~~~~~~~~~~~ 340 (551)
++ +++++++|+++++... + . ....++.+... ..........+..+|.+......
T Consensus 83 ~n-------------~s~a~~~v~~~~~~~~---------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (227)
T TIGR03089 83 AG-------------DPDADVVVTGPDRLAA---------A-A-GSGEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHG 138 (227)
T ss_pred CC-------------CCCCCEEEeCcchhhh---------c-c-cCCceEEEeccccccCCCCCCCCcccchhhhhhccC
Confidence 94 7899999998865321 1 0 11222332110 00000001123345555444322
Q ss_pred CCCCCCCCCCC-CCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHH
Q 008848 341 YHPRPNYYSPV-YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (551)
Q Consensus 341 ~~~~~~~~~~~-~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (551)
. ...+. ...++|++.|+||||+ +|++++... ...+++++|+++ .+|++|..++ ..++.+
T Consensus 139 ~-----~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~ 199 (227)
T TIGR03089 139 D-----QFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAP 199 (227)
T ss_pred C-----CCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHH
Confidence 1 11112 3456899999999986 666655443 456789999999 9999999998 468899
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCc
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVT 447 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt 447 (551)
|..|+++++++ ++++..+++.|+++|||
T Consensus 200 l~~G~t~v~~~-rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 200 LAAGGSLVLVT-HPDPARLDQIAETERVT 227 (227)
T ss_pred hccCceEEEec-CCCHHHHHHHHHhhcCC
Confidence 99999999996 78999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=199.92 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=139.6
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEe--cCC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY--QGS 431 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~--~~~ 431 (551)
.++++++|+|||||||.||||+++|+++.+........+ ...++++...|++|..++..++.+++.|++++++ ...
T Consensus 33 ~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~~ 110 (358)
T PRK07824 33 IDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSAG 110 (358)
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCCC
Confidence 468999999999999999999999999988776554433 3557888999999999988788899999999884 345
Q ss_pred CChhhHHHHHHHcC--CcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecccccccc
Q 008848 432 PLERSFGKFVQDAG--VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 509 (551)
Q Consensus 432 ~~~~~~~~~i~~~~--vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 509 (551)
+++..+++.+++++ +++...+|+.+..++.... ...+++++|.+++||+++++++.+++.+. +++++|.||+||+
T Consensus 111 ~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~ 187 (358)
T PRK07824 111 FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSET 187 (358)
T ss_pred cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCcc
Confidence 67889999999998 5667778998887765432 23457899999999999999998888753 4899999999998
Q ss_pred ccccccCCcCCCCCcCccCCCCCCceEEEEC
Q 008848 510 SSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540 (551)
Q Consensus 510 ~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD 540 (551)
+..+ ...|+|++|++++|.|
T Consensus 188 ~~~~-----------~~~G~~~~g~~v~i~~ 207 (358)
T PRK07824 188 SGGC-----------VYDGVPLDGVRVRVED 207 (358)
T ss_pred CCCc-----------CcCceeCCCCEEEecC
Confidence 6532 1358999999999954
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-22 Score=201.33 Aligned_cols=168 Identities=10% Similarity=0.018 Sum_probs=131.9
Q ss_pred CCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCC--CCEEEEecCcccchhh-HHHHHHHHhCCEEEEecCCC
Q 008848 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV--GDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSP 432 (551)
Q Consensus 356 ~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~~~~~ 432 (551)
+..++++|||||||.||||+++|+++.+........++++. .+++++..|++|..+. +.++.++..|+++++.+ .+
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~-~~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA-AA 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC-CC
Confidence 45789999999999999999999999988877666666643 4689999999998776 56788999999999876 46
Q ss_pred ChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccc
Q 008848 433 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA 512 (551)
Q Consensus 433 ~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 512 (551)
++..+++.++.+ |++.++|++++.|.+.. .++++++. ++||+++++++++.+.+. +..+++|.||+||++..
T Consensus 174 ~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i 245 (386)
T TIGR02372 174 PASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI 245 (386)
T ss_pred ChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence 677788777643 89999999999997642 34778886 678999999999988765 32469999999998764
Q ss_pred cccCCcCCCCCcCccCCCCCCceEEE
Q 008848 513 YIQGSLLQPQAFGAFSTATMTAGLVI 538 (551)
Q Consensus 513 ~~~~~~~~~~~~~~iG~p~~g~~v~I 538 (551)
.+... +...|+|+|+.++.+
T Consensus 246 ~~~~~------~~~~~~~~p~~~~~~ 265 (386)
T TIGR02372 246 GLREA------PDDPFRLLPDLACFA 265 (386)
T ss_pred ccccC------CCCCcccCCCccccC
Confidence 32211 224578888887765
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=194.99 Aligned_cols=191 Identities=17% Similarity=0.085 Sum_probs=141.7
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEEec
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~~ 429 (551)
+.+++++++|||||||.||+|+++|+++..... .....++++++|++++..++++..+. ...+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 456889999999999999999999998765432 22334688899999887666654333 33566788899988766
Q ss_pred CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCC--CCCCccEEEeecCCCChhhHHHHHHhccCCceecccccc
Q 008848 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (551)
Q Consensus 430 ~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (551)
. .++..+++.|+++++|++.++|+++..|++....... ...++|.+++|||+++++..+.+.+.++ ++++|.||+|
T Consensus 153 ~-~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~YG~t 230 (422)
T TIGR02155 153 G-GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIYGLS 230 (422)
T ss_pred C-CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC-CceEecccch
Confidence 3 3568899999999999999999999988764322222 2358999999999999999988888876 8999999999
Q ss_pred ccccccccCCcCCCCCcCccCCCCC--CceEEEEC-CCCCccCCCC
Q 008848 508 ELSSAYIQGSLLQPQAFGAFSTATM--TAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 508 E~~~~~~~~~~~~~~~~~~iG~p~~--g~~v~IlD-~~g~~vp~Gv 550 (551)
|+++..+..... . ...|.+++ +..+.|+| ++|+++|+|.
T Consensus 231 E~~~~~~~~~~~-~---~~~g~~~~~~~~~~eivd~~~g~~v~~Ge 272 (422)
T TIGR02155 231 EVIGPGVAMECV-E---TQDGLHIWEDHFYPEIIDPHTGEVLPDGE 272 (422)
T ss_pred hhcCCceeeccc-c---cCCCceEecCeeEEEEECCCCCCCCCCCC
Confidence 985211111110 0 11234443 56778999 5899999884
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=182.97 Aligned_cols=186 Identities=14% Similarity=0.010 Sum_probs=138.2
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh---hcCCCCCCEEEEecCcccchhhHH-HHHHHHhCCEEEEe
Q 008848 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALY 428 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~~lvl~ 428 (551)
.+.++++.|.|||||||+||+|+++|+++......... ..+++++|+++...+++++.+.+. .++++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 35578999999999999999999999998765543332 358899999999999888777644 35567788876532
Q ss_pred cCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCC--CCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccc
Q 008848 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 506 (551)
Q Consensus 429 ~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~--~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (551)
. . ....++.|+++++|++..+|+.+..|.+...... ...+++|.+++|||+++++..+++.+.++ ++++|.||+
T Consensus 163 ~-~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g-~~v~~~YG~ 238 (445)
T TIGR03335 163 G-K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWG-CEVYNTYGS 238 (445)
T ss_pred C-c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEecCCh
Confidence 2 2 2456889999999999999998877765322211 12468999999999999998888887775 899999999
Q ss_pred cccccccccCCcCCCCCcCccCCCC--CCceEEEECCC-CCccCCCC
Q 008848 507 TELSSAYIQGSLLQPQAFGAFSTAT--MTAGLVILDEC-GVPYVRTF 550 (551)
Q Consensus 507 TE~~~~~~~~~~~~~~~~~~iG~p~--~g~~v~IlD~~-g~~vp~Gv 550 (551)
||++.. ..+ .. ..|..+ +.+.+.|+|++ +++||+|.
T Consensus 239 TE~~~~-~~c-~~------~~g~h~~~d~~~vEIvDp~~~~~vp~Ge 277 (445)
T TIGR03335 239 TEGTMC-GEC-QA------VAGLHVPEDLVHLDVYDPRHQRFLPDGE 277 (445)
T ss_pred hhhhhe-EEe-cC------CCCccccCCceEEEEEcCCCCCCCcCCC
Confidence 998532 111 11 123333 45789999976 56789985
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-17 Score=177.80 Aligned_cols=281 Identities=16% Similarity=0.113 Sum_probs=189.7
Q ss_pred CCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCC----HHHHHHH---H
Q 008848 205 SAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA----AREIATR---L 276 (551)
Q Consensus 205 ~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~----~~~l~~~---l 276 (551)
+....+||++.+..+|.+++.|... ...|+.|+++|..+.++++..++++++|+.++|+||.+| ++++..+ +
T Consensus 65 ~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~ 144 (1032)
T KOG1178|consen 65 GIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFL 144 (1032)
T ss_pred ccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhh
Confidence 3445899999999999999999999 999999999999999999999999999999999999999 3322211 1
Q ss_pred HhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCC
Q 008848 277 RVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVD 356 (551)
Q Consensus 277 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (551)
......++. .++..........++.-+. ...-.+..+..... .......-+|
T Consensus 145 ~s~~~~i~~----------~l~i~~~~~~~~~~~~sv~------------~~~~~f~~~~~~~~------~r~~~~~~~d 196 (1032)
T KOG1178|consen 145 TSVELEIVR----------RLNIIDILLNSLFPKLSVE------------TIADSFQMVLHNED------TREIRVGGND 196 (1032)
T ss_pred eeccceehh----------hhhhHHHHhhccccccchh------------hccchhhhhhccCC------Ccceeeeccc
Confidence 111111110 0111111111000000000 00001111111111 1122334567
Q ss_pred CeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCC---C
Q 008848 357 AVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP---L 433 (551)
Q Consensus 357 ~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~---~ 433 (551)
+.+++.||||+||.||||.-+|..+.+...|+...+..+..+++-.....+++-.+.....+++..+..++++... .
T Consensus 197 s~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~ 276 (1032)
T KOG1178|consen 197 STALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDT 276 (1032)
T ss_pred ccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccc
Confidence 7899999999999999999999999999999999999988888755667767777766556665555555555322 3
Q ss_pred hhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc----------CC---CCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----------EG---LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 434 ~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~----------~~---~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
+.++...+++++++..+.+|++.+.++..... .. ...+.|+....+||+....+...+...+...-.
T Consensus 277 ~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~ 356 (1032)
T KOG1178|consen 277 PGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFF 356 (1032)
T ss_pred hhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceee
Confidence 67899999999999999999998877654211 01 112378999999999998887755444432223
Q ss_pred ecccccccccccc
Q 008848 501 IESCGGTELSSAY 513 (551)
Q Consensus 501 ~n~YG~TE~~~~~ 513 (551)
..-|+.|+.++-.
T Consensus 357 ~~~y~s~~~~~~~ 369 (1032)
T KOG1178|consen 357 GLPYLSTDPTGLV 369 (1032)
T ss_pred eecccCCCCccce
Confidence 3448888876543
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=160.66 Aligned_cols=263 Identities=13% Similarity=0.099 Sum_probs=192.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
.++++||.+|+..-+. .+.+..++||++|..+|.++|.+|... +++||.|+++.++++|++++++||+.+|.+++|
T Consensus 779 R~a~tp~~~a~~~~n~--~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIp 856 (1363)
T KOG3628|consen 779 RAAKTPDHIAFTTLNA--RGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIP 856 (1363)
T ss_pred HhhcCCCceEEEEecc--CCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeec
Confidence 3589999999998654 345667999999999999999999987 999999999999999999999999999999999
Q ss_pred cCCCCCH------HHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhh
Q 008848 263 IADSFAA------REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336 (551)
Q Consensus 263 l~~~~~~------~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~ 336 (551)
+.|.... ..+..|++.++++.|+++.......+..+....+.+.+-+.+.+.+.... +|..-.
T Consensus 857 v~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-----------t~~k~~ 925 (1363)
T KOG3628|consen 857 VPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-----------TIRKRK 925 (1363)
T ss_pred cCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-----------hhhhhh
Confidence 9887653 46678999999999999976432222112222222222222222221110 010000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHH
Q 008848 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VIL 415 (551)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~ 415 (551)
..-. ......++....++.+||+-|.--++|.--||-.+|.++++..........+.+..-++.+.+++-..|+ ...
T Consensus 926 ~~~~--k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wc 1003 (1363)
T KOG3628|consen 926 KNIK--KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWC 1003 (1363)
T ss_pred hhhh--ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHH
Confidence 0000 0011122233456789999888889999999999999999999988888888887777777777766666 336
Q ss_pred HHHHHhCCEEEEecC---CCChhhHHHHHHHcCCcEEEecHHHHHHHHhc
Q 008848 416 FSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 462 (551)
Q Consensus 416 ~~~l~~G~~lvl~~~---~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~ 462 (551)
+...++|...++++. ..++..|+..|.+++|.-++.+-..+..+.+.
T Consensus 1004 LlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~ 1053 (1363)
T KOG3628|consen 1004 LLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKG 1053 (1363)
T ss_pred HHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhc
Confidence 677889999888753 23678899999999999999888888877654
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=128.70 Aligned_cols=192 Identities=18% Similarity=0.107 Sum_probs=136.7
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEE
Q 008848 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLAL 427 (551)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl 427 (551)
..+.++...|--||||||+|+-+..+...+..... ......+...+|++..+..++...+- ...+++--.|++++=
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 44556777799999999999999999987654333 33344678899998877766554443 444555555655543
Q ss_pred ecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCC--CCCCCccEEEeecCCCChhhHHHHHHhccCCceecccc
Q 008848 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (551)
Q Consensus 428 ~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~--~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (551)
.. .-+-..-+++|+++++|++.++|+.+..|++...... .+-.+||.+++|+|+++++..+.+..+++ +..++.||
T Consensus 166 ~~-~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diYG 243 (438)
T COG1541 166 IS-GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIYG 243 (438)
T ss_pred cC-CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC-Cceeeccc
Confidence 32 2255678899999999999999999999887644332 23458999999999999999999998887 88899999
Q ss_pred ccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCC
Q 008848 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRT 549 (551)
Q Consensus 506 ~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~G 549 (551)
.||..+.-...+... . -.--.-++.-+.|+| +.|+++|.|
T Consensus 244 ltE~~g~g~~eC~~~--~--glhi~eD~~~~Ei~dP~t~e~l~dg 284 (438)
T COG1541 244 LTEGFGPGAGECTER--N--GLHIWEDHFIFEIVDPETGEQLPDG 284 (438)
T ss_pred cccccCCcccccccc--c--CCCcchhhceeeeecCCcCccCCCC
Confidence 999865421111111 1 011234567788899 568888887
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.5e-10 Score=114.14 Aligned_cols=145 Identities=15% Similarity=0.039 Sum_probs=98.6
Q ss_pred eEEEEecCCCCCCCceEEecchhhHHHHHHh---hhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCE-EEEecCCCC
Q 008848 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPL 433 (551)
Q Consensus 358 ~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~-lvl~~~~~~ 433 (551)
-..+.-||||||+|-.+.++........... ....++..++++..+. +..+ .++..+.+... +..++-..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~--~ly~~~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADN--NLYQSVNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccCh--hHHHHHHhccceeeecCCCcC
Confidence 3567789999999999999987643222211 1122455666655432 1111 22233323221 233332234
Q ss_pred hhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecccccccc
Q 008848 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 509 (551)
Q Consensus 434 ~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 509 (551)
.+..++.|++++++++.+.|+.+..|++.......+ .+++.++++||.++++..+.+.+.++ +++++.||+||+
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~YG~tEg 249 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIYQATEG 249 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEccCCchh
Confidence 578899999999999999999999998753332323 47899999999999998888888886 899999999993
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.5e-13 Score=107.07 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC------CccccCCcchhccccHHHHHHHhCCcccccc-
Q 008848 41 DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP------PLYWFPSLDQSKLTNLGNALEIHGPKLLGRA- 113 (551)
Q Consensus 41 ~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 113 (551)
+||+|||++ |+++|++.|+.+++|| ||+||++++..... .....+.....+++||.+.+.+.++++.+.+
T Consensus 1 ~hq~~Pf~~-lv~~l~~~r~~~~~pl--fqv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~ 77 (91)
T PF13745_consen 1 EHQDYPFER-LVEALGPPRDPSRNPL--FQVMFNYQNFSQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLE 77 (91)
T ss_dssp -T--S-HHH-HHHHT-----TTS-SS---SEEEEEE----S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEE
T ss_pred CCccCCHHH-HHHHhCcccCCccccc--cCeEEEEEecccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEE
Confidence 699999999 9999999999999999 99999999875432 1122344467899999999999999999999
Q ss_pred CCCCccchHHHHHHhhhCh
Q 008848 114 YKDPITSFRLFQKFTVEHP 132 (551)
Q Consensus 114 y~~~~~~~~~~~~~~i~~~ 132 (551)
|++ ++|++.+|++|
T Consensus 78 Y~~-----~lf~~~ti~~~ 91 (91)
T PF13745_consen 78 YNT-----DLFSEETIERM 91 (91)
T ss_dssp EET-----TT--HHHHHHH
T ss_pred EEh-----HhCCHHHHhcC
Confidence 999 99999999864
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.1e-07 Score=97.35 Aligned_cols=272 Identities=11% Similarity=0.062 Sum_probs=180.5
Q ss_pred CCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHH-HHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCCeEEe
Q 008848 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN-ALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~-~L~~~-v~~gd~V~i~~~~~--~e~vva~lA~~~~Ga~~vp 262 (551)
..++..+|.++-+. .|....+||..+..++.++|+ .|.+- +.++|+|.++...+ .++++..++|.-.|.+.+|
T Consensus 105 nhs~~~ta~i~id~---kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp 181 (1363)
T KOG3628|consen 105 NHSATSTAHICIDK---KGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVP 181 (1363)
T ss_pred cCCCCCceEEEEcC---CCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeecc
Confidence 56778888888775 234678999999999999999 55555 99999999998765 8999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
+.+.+..+++..+++....+++++.....+.+.....-... +....|....+.....
T Consensus 182 ~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~-----------------------~k~v~~w~t~~~k~~~ 238 (1363)
T KOG3628|consen 182 LSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSL-----------------------AKAVAWWKTNDFKGNY 238 (1363)
T ss_pred chhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccH-----------------------HHHHHhhhccccccee
Confidence 99999999999999999999999887543211110000000 0000010000000000
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHH---------------h-----hhhcCCCCCCEEEE
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---------------G-----WAHIDLKVGDVYCW 402 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~---------------~-----~~~~~~~~~d~~l~ 402 (551)
..+....+ ..... ..||-||++++|+--||+.+|+ ++..... . ...+++...++++.
T Consensus 239 ~~~k~~~P-~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~ 315 (1363)
T KOG3628|consen 239 TKDKIKKP-RMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLT 315 (1363)
T ss_pred ehhhccCC-ceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceee
Confidence 00000011 11112 7999999999999999999998 4432221 1 11234445555555
Q ss_pred ecCcccchhh-HHHHHHHHhCCEEEEecCCC--ChhhHHHHHHHcCCcEEEecHHHHHHHHhc----C-------ccCCC
Q 008848 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNT----N-------CLEGL 468 (551)
Q Consensus 403 ~~~~~~~~~~-~~~~~~l~~G~~lvl~~~~~--~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~----~-------~~~~~ 468 (551)
.....-..|+ +.++.+|.+|.|.+.+|... .+-.+..++.++|.+++..--..++..... + .....
T Consensus 316 ~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~ 395 (1363)
T KOG3628|consen 316 NLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTP 395 (1363)
T ss_pred ccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCC
Confidence 4444433443 34788999999999998643 456788999999999887765444433221 0 01124
Q ss_pred CCCCccEEEeecCCCChhh
Q 008848 469 DWTKIRSFASTGETSNVDD 487 (551)
Q Consensus 469 ~l~sLr~i~~gGe~l~~~~ 487 (551)
++++||.+++.-+.+..+.
T Consensus 396 d~sslk~C~Vtc~~vd~~~ 414 (1363)
T KOG3628|consen 396 DLSSLKGCMVTCTAVDTEF 414 (1363)
T ss_pred CccceeeeEEeeeecchHH
Confidence 6889999999999888773
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.4e-05 Score=78.08 Aligned_cols=188 Identities=14% Similarity=-0.023 Sum_probs=98.1
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh---hhcCCCCCC--EEEEecCcccc---hh--hHHHHHHHHhC
Q 008848 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGD--VYCWPTNLGWV---MG--PVILFSSFLNG 422 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d--~~l~~~~~~~~---~~--~~~~~~~l~~G 422 (551)
.+++++..++-||||||.|--+.+.+..+........ ..+...... .++...|-... ++ .......+..+
T Consensus 86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 3456678889999999998656665555444332222 222221111 22332232221 11 11222233444
Q ss_pred CEEEEec-CCCChhhHHHHH----HHcCCcEEEecHHHHHHHHhcCcc--CCCCCC-CccEEEeec------CCCCh-hh
Q 008848 423 ATLALYQ-GSPLERSFGKFV----QDAGVTVLGTVPSLVKAWRNTNCL--EGLDWT-KIRSFASTG------ETSNV-DD 487 (551)
Q Consensus 423 ~~lvl~~-~~~~~~~~~~~i----~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~-sLr~i~~gG------e~l~~-~~ 487 (551)
.. ..+. ...+.+.+.+.+ .+.+...+++.|.++-.++..... ....|+ ..+.+-.|| |.++. +.
T Consensus 166 ~~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef 244 (365)
T PF04443_consen 166 SR-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEF 244 (365)
T ss_pred ce-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHH
Confidence 55 3443 234555554443 456677888888876655442211 123343 344444444 34654 45
Q ss_pred HHHHHHhccC---CceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 488 DLWLSSKAWY---NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 488 ~~~~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
.+.+.+.++. ..+++.||+||.......+... . .++|-. |.|.|+ +.+|+|.|-
T Consensus 245 ~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~--~------~~~p~w-V~iRDp~tl~~~~~Ge 302 (365)
T PF04443_consen 245 YARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG--H------FHVPPW-VIIRDPETLEPLPPGE 302 (365)
T ss_pred HHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC--c------ccCCCe-EEEECCCCCcCCCCCC
Confidence 5666666763 3699999999976543222110 0 133333 777785 578999884
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.25 Score=50.72 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=69.4
Q ss_pred eEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEE
Q 008848 208 NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284 (551)
Q Consensus 208 ~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~--~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~v 284 (551)
.-+|..++...+..+|+.|... +.+||+|.++..-+ ..-+-..+|+.++|+.++|+.+ -.-++-..++++.++.+|
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcEE
Confidence 3689999999999999999999 99999999887721 1116788999999999999988 345667788999999999
Q ss_pred Eeecce
Q 008848 285 FTQDFI 290 (551)
Q Consensus 285 l~~~~~ 290 (551)
.+.+++
T Consensus 187 ~~tps~ 192 (438)
T COG1541 187 AATPSY 192 (438)
T ss_pred EEChHH
Confidence 999875
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=80.21 E-value=18 Score=38.07 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=68.0
Q ss_pred CceEEEEecCCCCCCC--ceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHH--HHHHHHHHHHhCCeEEecCC
Q 008848 191 NTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR--AVIIYLAIILAGYVVVSIAD 265 (551)
Q Consensus 191 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e--~vva~lA~~~~Ga~~vpl~~ 265 (551)
+.++.++...|. +|. ...+|.+++...+...++.+... +++||++.++.+.+.. ....++++.+.|+..+|...
T Consensus 86 ~~i~~i~~TSGT-TG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~ 164 (445)
T TIGR03335 86 KDIYTIHETSGT-SGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK 164 (445)
T ss_pred HHeEEEEeCCCC-CCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc
Confidence 455555543332 233 23579999998888889888888 9999999999876643 23445788999998887653
Q ss_pred CCCHHHHHHHHHhcCceEEEeecc
Q 008848 266 SFAAREIATRLRVSKAKGIFTQDF 289 (551)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~vl~~~~ 289 (551)
.+....++++.++..++....
T Consensus 165 ---~~~~~~~i~~~~~t~l~~~ps 185 (445)
T TIGR03335 165 ---CTFPIRIIESYRPTGIVASVF 185 (445)
T ss_pred ---hhHHHHHHHHhCCCEEEECHH
Confidence 234567889999998877554
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 551 | ||||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 3e-27 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 3e-27 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 3e-27 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 3e-27 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 3e-27 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 2e-26 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 4e-26 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 3e-15 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 9e-08 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 1e-07 |
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-36
Identities = 70/356 (19%), Positives = 121/356 (33%), Gaps = 38/356 (10%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
P ++ N A L + + T A + TY EL E+ A+AL
Sbjct: 17 EAPPALFNFAA--YLFRLNETRAGKT-AYIDDTGS--------TTYGELEERARRFASAL 65
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
T+ + I + M TV + +L + AG V V + L S A+ +
Sbjct: 66 RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
++ ++ L +A L P +++ + +
Sbjct: 126 ASGALV------QNVTQALESAEHDGCQLIVSQPRESEP--RLAPLFEELIDA-----AA 172
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWP 403
D + L+SSG+TG+PK T +++ TAE +A + + DV
Sbjct: 173 PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSA 231
Query: 404 TNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 462
L + G L GAT L P + + + TV VP+L +
Sbjct: 232 AKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS 291
Query: 463 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYI 514
L IR S GE ++ + + I++ G TE+ ++
Sbjct: 292 PNLPARADVAIRICTSAGEALPR--EIG---ERFTAHFGCEILDGIGSTEMLHIFL 342
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-32
Identities = 65/377 (17%), Positives = 121/377 (32%), Gaps = 39/377 (10%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDRTDKSKHGGTWLPGSVLNIAEC 178
H + + K ++ + F + + + L N A
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMTSLLSQFVSKTD--FESYEDFQENFKILVPENFNFAYD 60
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
+ + R +A++W +D +E T+K+L+ AN KGD +
Sbjct: 61 VV--DVYARDSPEKLAMIWCDDYGNEKIF---TFKDLKYYSDKAANFFVKHGIGKGDYVM 115
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
+ + L + G + V R+I R+ + K I
Sbjct: 116 LTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA----EDDVP 171
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL-SSVDYHPRPNYYSPVYNPVD 356
+ +P VG + E + ++ L S RP D
Sbjct: 172 EQVDEAHAECG----DIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVST-KNED 226
Query: 357 AVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
+ + FSSGT G PK + L I TA+ W +++ ++ + GW
Sbjct: 227 ICL-VYFSSGTAGFPKMVEHDNTYPLGHIL-TAKYW--QNVEDDGLHYTVADSGWGKCVW 282
Query: 414 -ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLEG 467
L+ ++ G + +Y E ++ + GVT P L+K L
Sbjct: 283 GKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-----LSH 337
Query: 468 LDWTKIRSFASTGETSN 484
+++ ++ GE N
Sbjct: 338 YNFSTLKYAVVAGEPLN 354
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-32
Identities = 68/355 (19%), Positives = 121/355 (34%), Gaps = 52/355 (14%)
Query: 173 LNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM 229
N A L K + A+ W + E ++EL E AN L
Sbjct: 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELM---WNFRELSENSQQAANVLSGA 93
Query: 230 F--SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
+GD +A+ +P ++ L I AG + + + +I RL++SKAK I
Sbjct: 94 CGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAG 153
Query: 288 DFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343
D + +V A L+ +L V + L++K L+
Sbjct: 154 D---------EVIQEVDTVASECPSLRIKLL------VSEKSCDGWLNFKKLLNEA---- 194
Query: 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWP 403
+ V I F+SGT+G PK + S L+ D+
Sbjct: 195 -STTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTI 253
Query: 404 TNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPS----LVK 457
++ GW++ + L + GA ++ + K + + + P L++
Sbjct: 254 SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313
Query: 458 AWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTE 508
L + +++ + GE+ + + W I ES G TE
Sbjct: 314 QD-----LSSYKFPHLQNCVTVGESLL--PETL---ENWRAQTGLDIRESYGQTE 358
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 5e-30
Identities = 105/436 (24%), Positives = 171/436 (39%), Gaps = 85/436 (19%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGG 165
+ R +P +++ ++ P+ +W K + + + + + +
Sbjct: 11 ANIADRCLINPEQYETKYKQ-SINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSI 67
Query: 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANA 225
W LN+A CL H ++ + AI+W D +S ++Y+EL V AN
Sbjct: 68 KWYEDGTLNLAANCL--DRHLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANT 123
Query: 226 LDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATR 275
L + KGD +AI MPM A + LA +I G F+ +A
Sbjct: 124 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG---------FSPEAVAGC 174
Query: 276 LRVSKAKGIFTQDFILRGGRKFPLYSKV-----LGAAPL--KAIVLPAIGNDVG-IPLRE 327
+ S ++ + T D +R GR PL V IVL G+D+ R
Sbjct: 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR- 233
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W+D + + P ++A + IL++SG+TG+PK + T T
Sbjct: 234 -DLWWRDLIEKA-----SPEHQPE--AMNAEDPLFILYTSGSTGKPKGVLHT-------T 278
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLE 434
G +A D GD+Y W T ++GWV G +L+ GAT +++G P
Sbjct: 279 G-GYLVYAATTFKYVFDYHPGDIY-WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 435 RSFGKF---VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNV 485
+ + V V +L T P+ ++A EG + +R S GE N
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMA----EGDKAIEGTDRSSLRILGSVGEPIN- 391
Query: 486 DDDLWLSSKAWYNAII 501
+ W WY I
Sbjct: 392 -PEAWE----WYWKKI 402
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-29
Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 82/418 (19%)
Query: 126 KFTVEHPEAYW-EIALKEIS--VVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
K ++E P ++ A + ++ F + S W LN C+
Sbjct: 31 KESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV-- 88
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAIDM 240
H K N AI++ D + +TYKEL E+V VA L KGD +A+ M
Sbjct: 89 DRHALKTPNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYM 146
Query: 241 PMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
PM A+I LA ++ AG F++ + R+ +K + T D
Sbjct: 147 PMVPEAIITLLAISRIGAIHSVVFAG---------FSSNSLRDRINDGDSKVVITTDESN 197
Query: 292 RGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRP 345
RGG+ V L P +V N + +DL W
Sbjct: 198 RGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP-SVAFHAPRDLDWATEKKKY-----K 251
Query: 346 NYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DL 394
YY PVD+ + +L++SG+TG PK + + TA G A + D
Sbjct: 252 TYYPCT--PVDSEDPLFLLYTSGSTGAPKGVQHS-------TA-GYLLGALLTMRYTFDT 301
Query: 395 KVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVL 449
DV+ + ++GW+ G +++ L G +++G+P ++ ++ + + VT
Sbjct: 302 HQEDVF-FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQF 360
Query: 450 GTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAII 501
P+ ++ + G + + +R S GE ++W WY+ I
Sbjct: 361 YVAPTALRLLKR----AGDSYIENHSLKSLRCLGSVGEPIA--AEVWE----WYSEKI 408
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-26
Identities = 47/279 (16%), Positives = 87/279 (31%), Gaps = 25/279 (8%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y E E+ + AL IA+ I +A + G V + +
Sbjct: 53 YSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYT 112
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ L +SK +F+ KV+ + + D
Sbjct: 113 LRELVHSLGISKPTIVFSSK---------KGLDKVITVQKTVTTIKTIVILD-SKVDYRG 162
Query: 329 DLSWKDFLS--SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIR 383
F+ + ++ + + + V I+ SSG+TG PK + T ++
Sbjct: 163 YQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFS 222
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER----SFGK 439
+ + G G + G + + L + +F K
Sbjct: 223 HARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM-----LTKFDEETFLK 277
Query: 440 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+QD T + VP+L + L D + + AS
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS 316
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 7e-26
Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 35/284 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY E E + +A A+ + I + +++ + L + G V D +
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGI 323
RE+ + +S+ +F K+L K I++ + + G
Sbjct: 111 ERELLNSMNISQPTVVFVSK---------KGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 161
Query: 324 PLREQDLSWKDFLSSVD--YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--- 378
S F++S ++ ++ + I+ SSG+TG PK +
Sbjct: 162 Q------SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA 215
Query: 379 LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER--- 435
+ + G + G + L + R
Sbjct: 216 CVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL-----MYRFEE 270
Query: 436 -SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
F + +QD + VP+L + + ++ D + + AS
Sbjct: 271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 49/299 (16%), Positives = 103/299 (34%), Gaps = 40/299 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
AI+ E + M + E+ E +A+ + KG+ + + +P ++ V+
Sbjct: 34 EKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ V I + + E+ L S+A + + + VL +
Sbjct: 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGV 147
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
+ + + + S + + S ++ + NP + V I ++ GTTG
Sbjct: 148 ERVFVVG----------GEVNSLSEVMDS----GSEDFENVKVNPEEDVALIPYTGGTTG 193
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATLALY 428
PK + T + + L D ++G + +F S L +
Sbjct: 194 MPKGVMLTHFNLAANALQLAVATGLSHMDT---------IVGCMPMFHSAEFGLVNLMVT 244
Query: 429 QGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAS 478
G+ + + ++ T VP + NT + DW+ ++ FA+
Sbjct: 245 VGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFAT 303
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 55/277 (19%), Positives = 90/277 (32%), Gaps = 42/277 (15%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI +Y+EL + +A + + D + + +P +
Sbjct: 42 IAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIF 93
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK 310
A+ G + V S + EI ++A D G L +V P LK
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD-AYSGFDYRSLARQVQSKLPTLK 152
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE 370
I++ G E+ L +D + P V + S G+TG
Sbjct: 153 NIIV------AGEA--EEFLPLEDLHTEPVKLPEVKS--------SDVAFLQLSGGSTGL 196
Query: 371 PKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGA 423
K IP T + S++ + E L VY N V+ G
Sbjct: 197 SKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMAHNYPLSSPGVL--GVLYAGG 251
Query: 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
+ L SP + +F ++ VT+ VP L W
Sbjct: 252 RVVLSPSPSP-DDAF-PLIEREKVTITALVPPLAMVW 286
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 46/269 (17%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ +A + ++ D + + +P V+ +LA G + F
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S K I T+ K+ +V+ I ++ +P+ E
Sbjct: 149 PAEIAKQAKASNTKLIITEA---------RYVDKIKPLQNDDGVVIVCIDDNESVPIPEG 199
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-------S 381
L + + S V D VV + +SSGTTG PK + L+
Sbjct: 200 CLRFTELTQSTT--EASEVIDSVEISPDDVVALPYSSGTTGLPKGV---MLTHKGLVTSV 254
Query: 382 IRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFLNGATLALYQGSPL--- 433
+ ++ DV L + +S + L G+ +
Sbjct: 255 AQQVDGENPNLYFHSDDVI-----LCVLPMFHIYA----LNSIMLC---GLRVGAAILIM 302
Query: 434 ----ERSFGKFVQDAGVTVLGTVPSLVKA 458
+ +Q VTV VP +V A
Sbjct: 303 PKFEINLLLELIQRCKVTVAPMVPPIVLA 331
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 58/289 (20%), Positives = 95/289 (32%), Gaps = 41/289 (14%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI+ E + ++Y EL +A L KGD + +P I++
Sbjct: 47 LAIICGERQ--------LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
A++ AG VV++ S E+ ++ + K + + ++S L
Sbjct: 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR-------QHEVFSNNQFIDSLHD 151
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
V + + + + D D++ + P + P D V S G+TG P
Sbjct: 152 -VNLSPEIILMLNHQATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTP 206
Query: 372 KAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGAT 424
K IP T S+R +AE L N G
Sbjct: 207 KLIPRTHNDYDYSVRASAEIC---GLNSNTRLLCALPAPHNFMLSSP--GALGVLHAGGC 261
Query: 425 LALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472
+ + P F +Q V + VPS V W LE K
Sbjct: 262 VVMAPNPEP-LNCF-SIIQRHQVNMASLVPSAVIMW-----LEKAAQYK 303
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 53/284 (18%), Positives = 89/284 (31%), Gaps = 38/284 (13%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
R +++A++ E + ++Y+EL + +A +L G+ + +
Sbjct: 34 TRHAASDSIAVIDGERQ--------LSYRELNQAADNLACSLRRQGIKPGETALVQLGNV 85
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
I + A++ G V S E+ + + + L+S
Sbjct: 86 AELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR-------QHALFSGD 138
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
+I + D + ++++ +P P D V
Sbjct: 139 DFLNTFVT-EHSSIRVVQLLN----DSGEHNLQDAINHPAEDFTATPS--PADEVAYFQL 191
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILF 416
S GTTG PK IP T S+R + E Y N P L
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSS-PGSL- 246
Query: 417 SSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
FL G T+ L S F ++ V V VP V W
Sbjct: 247 GVFLAGGTVVLAADPSA-TLCF-PLIEKHQVNVTALVPPAVSLW 288
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-21
Identities = 58/337 (17%), Positives = 125/337 (37%), Gaps = 60/337 (17%)
Query: 160 KSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQV 219
+SK ++P + L + L + + ++ + + ++ TY ++
Sbjct: 10 RSKLPDIYIPKN-LPLHSYVL---ENLSNHSSKPCLI------NGANGDVYTYADVELTA 59
Query: 220 MLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278
VA+ L+ + +GD I + +P + V+ +L G ++ + E+A +
Sbjct: 60 RRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKA 119
Query: 279 SKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDF 335
S+AK + TQ Y KV A +K + + + + L + +
Sbjct: 120 SRAKLLITQA---------CYYEKVKDFARESDVKVMCVDSAPDGC--------LHFSEL 162
Query: 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWA-H 391
+ + +P D V + +SSGTTG PK + T ++S+ +G +
Sbjct: 163 TQADENEAPQ----VDISPDDVVA-LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPN 217
Query: 392 IDLKVGDVYCWPTNLGW-----VMG-PVILFSSFLNGATLALYQGSPLER----SFGKFV 441
+ DV L + I+ GA + + + + S +
Sbjct: 218 LYFHSEDVI-----LCVLPMFHIYALNSIMLCGLRVGAPILI-----MPKFEIGSLLGLI 267
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+ V++ VP ++ + + L+ D + +R S
Sbjct: 268 EKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKS 304
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-18
Identities = 53/305 (17%), Positives = 93/305 (30%), Gaps = 51/305 (16%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ + + +AI ++Y EL + VAN L GD +A +
Sbjct: 11 DKLDDPHKLAIETAAGDK-------ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
V A+++YLA + AG V + + ++ E+ + ++ K + K + +
Sbjct: 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDP------SKRDGIAAI 117
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
L G S D + D + IL+
Sbjct: 118 AAKVGATVETLGPDG----------RGSLTDAAAGASEAFATIDRGA-----DDLAAILY 162
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGPVILF 416
+SGTTG K + S+ + W DV + G +
Sbjct: 163 TSGTTGRSKGAMLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYHTHGLFVA---SN 216
Query: 417 SSFLNGATLALYQGSPLERSF--GKFVQD-AGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473
+ ++ F K + A TVL VP+ + L +
Sbjct: 217 VTLFARGSMI------FLPKFDPDKILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHM 270
Query: 474 RSFAS 478
R F S
Sbjct: 271 RLFIS 275
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 3e-18
Identities = 64/315 (20%), Positives = 102/315 (32%), Gaps = 48/315 (15%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI + A V D MTY ++ A+ L + +
Sbjct: 16 KNIGW---MLRQRATVSPRLQAYVEPST--DVR----MTYAQMNALANRCADVLTALGIA 66
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGD +A+ MP +V ++ G V V I AA E++ L S +K +
Sbjct: 67 KGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA 126
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
P+ + A V IG D S + L S
Sbjct: 127 ------PVIDAIRAQADPPGTVTDWIGAD----------SLAERLRSAAADEPAVECGG- 169
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
D + I+++SGTTG PK + T S + + ID++ D +
Sbjct: 170 ----DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLL-------LPL 218
Query: 412 PVILFSSF-LNGATLALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTN 463
P +F L + +G F + + V + G VP+++ R
Sbjct: 219 P--MFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP 276
Query: 464 CLEGLDWTKIRSFAS 478
LD R F +
Sbjct: 277 EFAELDAPDFRYFIT 291
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 8e-18
Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 23/263 (8%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLA 252
+AI ++ TY+ L + L+A L + + + + +++++I+ A
Sbjct: 18 IAITDGQES--------YTYQNLYCEASLLAKRL--KAYQQSRVGLYIDNSIQSIILIHA 67
Query: 253 IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI 312
LA + I E+ ++R + IF PL + L I
Sbjct: 68 CWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL---------PLELRGFQIVSLDDI 118
Query: 313 VLPAIGNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
G+ + + +V P+ +D + +I+F+SGTTG
Sbjct: 119 EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQ 178
Query: 372 KAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430
KA+P T + +A G + + + + G +L + + G T+ +
Sbjct: 179 KAVPQTF-RNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237
Query: 431 SPLERSFGKFVQDAGVTVLGTVP 453
E+ +++ +T + VP
Sbjct: 238 FNAEQIL-TMIKNERITHISLVP 259
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 4e-17
Identities = 37/287 (12%), Positives = 81/287 (28%), Gaps = 42/287 (14%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
+A+ + + + A + R +T+++ + +A+ L
Sbjct: 6 FTLAD---VYRRNAALFPDRTAFMVDGVR--------LTHRDYLARAERLASGLLRDGVH 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
GD +AI + + A+ L G +++ + A EIA L +
Sbjct: 55 TGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR 114
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ + VL + + + + F P
Sbjct: 115 ------DIVAGVLPSLGGVKKA---------YAIGDGSGPFAPFKDLASDTPFS----AP 155
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
I+ ++ G P+ +Q + + + L DV L V G
Sbjct: 156 EFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTG 215
Query: 412 PVILFSSFLNGATLALYQGSPLERSFG-----KFVQDAGVTVLGTVP 453
++ + G + F + ++ VTV+
Sbjct: 216 LGLMLTLQQAGGASV------IAAKFDPAQAARDIEAHKVTVMAEFA 256
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 42/255 (16%), Positives = 74/255 (29%), Gaps = 63/255 (24%)
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
L + A+ + E +TY EL A + +A+
Sbjct: 28 LSPAPTGAPADRPALRFGERS--------LTYAELAAAAGATAGRI----GGAGRVAVWA 75
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPL 299
+ + +A +LAG V + +E+A L S + D L
Sbjct: 76 TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPA----- 130
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
LGA + + A G + D +
Sbjct: 131 ----LGALERVDVDVRARGAVPEDGADDGDPAL--------------------------- 159
Query: 360 NILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGP 412
++++SGTTG PK + +++ A+ W DV L G V+G
Sbjct: 160 -VVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLG- 214
Query: 413 VILFSSFLNGATLAL 427
+ G ++
Sbjct: 215 --ILGPLRRGGSVRH 227
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 5e-14
Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 37/252 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + + + + I+ + +
Sbjct: 90 SAELAELIKRGEMTAAVIAV-------GRQVADAIFQSGSGARIIFLG-----DLVRDGE 137
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
S+ + P I ++SGTTG PKA Q ++
Sbjct: 138 PYSYGPPIEDPQREP------------AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 389 WAHIDLKVG--DVYCWPTNL----GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFV 441
+ L+ G +V L G+ L ++ T + + P++ + V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAV---LVAALALDGTYVVVEEFRPVD--ALQLV 240
Query: 442 QDAGVTVLGTVP 453
Q VT L P
Sbjct: 241 QQEQVTSLFATP 252
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 1e-11
Identities = 74/477 (15%), Positives = 136/477 (28%), Gaps = 167/477 (35%)
Query: 10 VEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIW------RELVARKVLKPWHPHGL 63
V+D+ K L EE D I+ + S L R W E+V + V +
Sbjct: 38 VQDMPKSILS---KEEIDHIIMSKDAVSGTL--RLFWTLLSKQEEMVQKFV------EEV 86
Query: 64 HQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRL 123
++ Y + + + P S+ + R Y D ++
Sbjct: 87 LRINYKFLMSPIKTEQRQP------SMMTRMYIEQRD-----------RLYNDN----QV 125
Query: 124 FQKFTVEHPEAYWEI--ALKEISVVFREAPKCILDRTDKSKHG--G---TWLPGSV---- 172
F K+ V + Y ++ AL E+ R A ++ G G TW+ V
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL----RPAKNVLI-------DGVLGSGKTWVALDVCLSY 174
Query: 173 ------------LNIAECC--------------LLPSNHRRKEDNTVAIVWREDRCDESA 206
LN+ C + N + D++ I R
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 207 VNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP----MTVRAVIIYLAIILAGYVVVS 262
L+ K +LV L + + A ++ +T R
Sbjct: 235 RRLLKSKPYEN-CLLV---LLNVQNAKAWNAFNLSCKILLTTRF--------------KQ 276
Query: 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP--AIGND 320
+ D +A T + + T D + L K L P LP +
Sbjct: 277 VTDFLSA-ATTTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQD---LPREVLT-- 324
Query: 321 VGIPL---------REQDLSWKDFL------------SSVDYHPRPNYYSPVYN-----P 354
P R+ +W ++ SS++ P Y +++ P
Sbjct: 325 -TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFP 382
Query: 355 VDA-----VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----------HIDLKV 396
A ++++++ + + E +++LKV
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKV 437
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 50/261 (19%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY E+ ++ + L + GD +A R + Y A+ G V+ + +
Sbjct: 48 TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 107
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLR 326
+EIA L ++ K + + + PL + G ++ V +
Sbjct: 108 PKEIAYILNHAEDKVLLFDPNLL-------PLVEAIRGELKTVQHFV------VMDEKAP 154
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSI 382
E L++++ L R P A + +++GTTG PK + ++ L S+
Sbjct: 155 EGYLAYEEALGEEADPVRV--------PERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206
Query: 383 R-CTAEGWAHIDLKVGDVYCWPT-----NLGWVMGPVILFSSFLNGATLAL----YQGSP 432
+G A L DV N W + P +++ L GA L +
Sbjct: 207 AASLVDGTA---LSEKDVVLPVVPMFHVN-AWCL-P---YAATLVGAKQVLPGPRLDPAS 258
Query: 433 LERSFGKFVQDAGVTVLGTVP 453
L GVT VP
Sbjct: 259 LVE----LFDGEGVTFTAGVP 275
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 32/208 (15%)
Query: 191 NTVAIVWREDRCD-ESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVII 249
+ A + + D + +T+ +L + + VA L S GD + I P + V+
Sbjct: 39 HDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEYVVA 98
Query: 250 YLAIILAGYVVVSIA--DSFAARE-IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA 306
+L + AG + V ++ E + L S I T + + ++ G
Sbjct: 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH--VARRPGE 156
Query: 307 APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+P I + + D + + ++SG
Sbjct: 157 SPPSIIEVDLLDLDAP-------------NGYTFKEDEY----------PSTAYLQYTSG 193
Query: 367 TTGEPKAIPWTQ---LSSIRCTAEGWAH 391
+T P + + + G+
Sbjct: 194 STRTPAGVVMSHQNVRVNFEQLMSGYFA 221
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 30/209 (14%), Positives = 71/209 (33%), Gaps = 37/209 (17%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
N + + +E+ MTY++L + +A L GD + + + +
Sbjct: 26 NKKSCTFLNKELEET----MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81
Query: 250 YLAIILAGYVVVSIA----DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
+L + AG + V I + + + SK + ++ + L
Sbjct: 82 FLGCLYAGCIAVPIYPPAQEKLLDK-AQRIVTNSKPVIVLMIADHIKK-----FTADELN 135
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
P K + +PAI + S++ + ++ + + + ++S
Sbjct: 136 TNP-KFLKIPAIALE-----------------SIELNRSSSWQPTSIKS-NDIAFLQYTS 176
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAH 391
G+T PK + + L ++ +
Sbjct: 177 GSTMHPKGVMVSHHNLLDNLNKIFTSFHM 205
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.96 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.95 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.95 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.95 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 98.62 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 98.16 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 98.07 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 96.64 | |
| 1q9j_A | 422 | PAPA5, polyketide synthase associated protein 5; c | 91.66 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 89.22 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 88.61 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 88.55 |
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=595.48 Aligned_cols=481 Identities=15% Similarity=0.106 Sum_probs=373.5
Q ss_pred HHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC---------
Q 008848 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--------- 82 (551)
Q Consensus 13 ~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~--------- 82 (551)
.++++++++++.+|.++|+++++...++ +||++||++ |++.++ ++|+ ||+||++++.+...
T Consensus 301 tlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~------~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 371 (1304)
T 2vsq_A 301 VVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD------QPKL--IDHIIVFENYPLQDAKNEESSEN 371 (1304)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS------CSSS--CCCEEEECSSCHHHHSCCCHHHH
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC------CCcc--cceeEEEeecccccccccccccC
Confidence 4578899999999999999999998887 999999999 999885 3577 99999988753110
Q ss_pred CccccC-CcchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeecccccc--ccCC
Q 008848 83 PLYWFP-SLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRT 158 (551)
Q Consensus 83 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~ 158 (551)
...... .....++|||.+.+. .++++.+.+ |+. ++|++.+++++.++|.++++++..+++.+...+ +...
T Consensus 372 g~~~~~~~~~~~~~~dL~l~~~-~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~ 445 (1304)
T 2vsq_A 372 GFDMVDVHVFEKSNYDLNLMAS-PGDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDR 445 (1304)
T ss_dssp SEEEEEEEECCCCCSSEEEEEE-CSSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHH
T ss_pred CceeEeeecccccccCeEEEEe-cCCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHH
Confidence 000000 011356778777653 356788888 999 999999999999999999999875555444332 2222
Q ss_pred CCCCCCCCcCCCCcchhhhhhccc--cccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCE
Q 008848 159 DKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235 (551)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~ 235 (551)
++......|+.+...... .+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++
T Consensus 446 e~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~ 516 (1304)
T 2vsq_A 446 EREFLLTGLNPPAQAHET-KPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSV 516 (1304)
T ss_dssp HHHHHHTTTSCCCCCCCC-CCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHhcCCCCCCCCC-CCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCE
Confidence 222223456654332211 22221 235689999999998776 999999999999999999999 999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEec
Q 008848 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP 315 (551)
Q Consensus 236 V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 315 (551)
|+|+++|++++++++|||+|+|++|||+||.+|.+|+.+++++++++++|++.........++ .....+++.
T Consensus 517 V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~~~~~~~ 588 (1304)
T 2vsq_A 517 VALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTGTTLFID 588 (1304)
T ss_dssp EEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCSEEEESS
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCCcEEEec
Confidence 999999999999999999999999999999999999999999999999999875421110000 001111111
Q ss_pred CCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCC
Q 008848 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (551)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 395 (551)
. ...... .. ........++++|||+|||||||+||||+++|+++.+. .+....++++
T Consensus 589 ~---------------~~~~~~-~~------~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~ 645 (1304)
T 2vsq_A 589 D---------------QTRFEE-QA------SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFS 645 (1304)
T ss_dssp C---------------GGGGGS-CS------SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCC
T ss_pred c---------------cccccc-cc------CCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCC
Confidence 0 000100 00 11223456799999999999999999999999999876 5556678899
Q ss_pred CCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC--CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCc
Q 008848 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (551)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~--~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sL 473 (551)
++|+++++++++|+.+.+++|.+|+.|+++++.+. ..++..+.+.|++++||++.++|++++.|.+.. ...+++|
T Consensus 646 ~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~l 722 (1304)
T 2vsq_A 646 DQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGL 722 (1304)
T ss_dssp TTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCc
Confidence 99999999999999999999999999999999874 347889999999999999999999999998643 2236789
Q ss_pred cEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcC---CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.+++|||++++++.+++.+.++.++++|.||+||++++++..... ......+||+|++|++++|+|++++++|+|+
T Consensus 723 r~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~ 802 (1304)
T 2vsq_A 723 RCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGA 802 (1304)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred cEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCC
Confidence 9999999999999999888887777999999999998765543221 2234578999999999999999999999997
Q ss_pred C
Q 008848 551 S 551 (551)
Q Consensus 551 ~ 551 (551)
.
T Consensus 803 ~ 803 (1304)
T 2vsq_A 803 V 803 (1304)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-59 Score=513.85 Aligned_cols=425 Identities=22% Similarity=0.340 Sum_probs=340.2
Q ss_pred CCCCccchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCC---C-CCCCCCCcCCCCcchhhhhhccccccCCCC
Q 008848 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (551)
Q Consensus 114 y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (551)
+...+.+|..++++++++++.||..+++.. +.|.+++.++++.. . ......+|+.++.+|.+.+++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 444556789999999999999999999862 57889999998764 2 1223368999999999999998765 679
Q ss_pred CCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCC
Q 008848 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (551)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~ 267 (551)
||++|+++.+. ..+..+++||+||+++++++|++|+ ++ |++||+|+|+++|++++++++|||+++|++++|+++.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1234568999999999999999999 89 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhc---CCC--ceEEecCCCC-CCCCCCCCCCcchHHhhccCCC
Q 008848 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---APL--KAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 268 ~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~---~~~--~~~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
+.+++.++++++++++||+++...+.++.++....+.+. .+. .++++..... ... ........|+++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-FHAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC-CCSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc-cCCCccccHHHHHhhcCC
Confidence 999999999999999999998876666655544433332 221 2344432211 000 011233557776654321
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHH-HhhhhcCCCCCCEEEEecCcccchhh-HHHHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l 419 (551)
..+.....++|++||+|||||||+||||+++|++++.... .....++++++|++++.++++|+++. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345679999999999999999999999999876554 34456889999999999999999998 6789999
Q ss_pred HhCCEEEEecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHh
Q 008848 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (551)
Q Consensus 420 ~~G~~lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 494 (551)
+.|++++++++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++++++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999753 478899999999999999999999999987643 345678999999999999999999999988
Q ss_pred cc--CCceeccccccccccccccCCc--CCCCCcCccCCCCCCceEEEECC-CCCccCC-C
Q 008848 495 AW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYVR-T 549 (551)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~-G 549 (551)
++ .++++|.||+||+++.++...+ ..+.+.+++|+|++|++++|+|+ +|+++|+ |
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g 468 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH 468 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCC
Confidence 75 3789999999999865554432 23456789999999999999998 8999987 5
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-59 Score=509.52 Aligned_cols=419 Identities=25% Similarity=0.372 Sum_probs=337.3
Q ss_pred chHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCC-CCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEEe
Q 008848 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (551)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~ 198 (551)
+|..+.++++++++.||..+++. +.|.+++.++++.... ..+..+|+.++..|...+++++++ +++||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEE
Confidence 57888999999999999999886 6788888888765321 133568999999999999887754 678999999985
Q ss_pred cCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 008848 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (551)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~ 277 (551)
+. ..+..+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred cC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 43 123456999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEeecceeccCccccchhHHhh---cCC----CceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCC
Q 008848 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (551)
Q Consensus 278 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~---~~~----~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (551)
++++++||+++...+.++.++....+.+ ..+ ..++++......... .......|++++..... ....
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCc
Confidence 9999999999887666555544433322 221 233444322111000 01123457777654321 1222
Q ss_pred CCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHH-HhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEEEe
Q 008848 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (551)
Q Consensus 351 ~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvl~ 428 (551)
....++|++||+|||||||+||||+++|++++.... .....++++++|++++.+|++|+++. +.++.+|++|++++++
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 345679999999999999999999999999876653 44456889999999999999999998 7789999999999999
Q ss_pred cCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhcc--CCcee
Q 008848 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (551)
Q Consensus 429 ~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (551)
++. +++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++++++.+.++ .++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 753 478899999999999999999999999987643 34567899999999999999999999988775 37899
Q ss_pred ccccccccccccccCCc-CCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||+++.++...+ ..+.+.+++|+|++|++++|+|++|+++|.|.
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~ 460 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT 460 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCc
Confidence 99999999876554332 23456789999999999999999999999874
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-53 Score=455.82 Aligned_cols=365 Identities=16% Similarity=0.134 Sum_probs=291.1
Q ss_pred CcCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 008848 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (551)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~ 244 (551)
.|......|....++++++ +++||++|+++.+. .+..+++||+||+++++++|++|+++ +++||+|+|+++|++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~ 122 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY 122 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT
T ss_pred CCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence 5665666777777776654 78999999998543 23456999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC---CceEEecCCCCCC
Q 008848 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDV 321 (551)
Q Consensus 245 e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~vv~~~~~~~ 321 (551)
++++++|||+|+|++++|++|.++.+++.+++++++++++|++.+.. .......+....+ ...+.+...
T Consensus 123 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (580)
T 3etc_A 123 DFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD---- 194 (580)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS----
T ss_pred HHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc----
Confidence 99999999999999999999999999999999999999999987521 0012222222222 223333211
Q ss_pred CCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEE
Q 008848 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (551)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l 401 (551)
...+..++.+........ ...........++|++||+|||||||.||||+++|++++..+......+++.++++++
T Consensus 195 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (580)
T 3etc_A 195 ---VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHY 270 (580)
T ss_dssp ---CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEE
T ss_pred ---cccccccHHHHHhhCCcc-cccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEE
Confidence 112445566665543320 0001111245679999999999999999999999999888777666667889999999
Q ss_pred EecCcccchhhHH-HHHHHHhCCEEEEec-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEee
Q 008848 402 WPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (551)
Q Consensus 402 ~~~~~~~~~~~~~-~~~~l~~G~~lvl~~-~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~g 479 (551)
+.++++|+.+.+. ++.+++.|+++++.+ ..+++..+++.|+++++|++.++|++++.|.+.. ....++++||.+++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~g 349 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVA 349 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEEC
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEc
Confidence 9999999988875 788999999999985 4678999999999999999999999999998763 445678999999999
Q ss_pred cCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||++++++.+++.+.++ ++++|.||+||+++.++.. +......+++|+|++|++++|+|++|+++|+|.
T Consensus 350 Ge~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~ 418 (580)
T 3etc_A 350 GEPLNPEVFNRFLEFTG-IKLMEGFGQTETVVTIATF-PWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGE 418 (580)
T ss_dssp SSCCCHHHHHHHHHHHS-CCCEEEECCTTSSCCEECC-TTSCCCTTCCBEECTTCEEEEECTTSCBCCTTC
T ss_pred cCCCCHHHHHHHHHHhC-CeEecccccccccceeecC-CCCCCCCCccccCCCCCEEEEECCCCCCCCCCC
Confidence 99999999999988765 8999999999998654433 333556789999999999999999999999986
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=456.20 Aligned_cols=318 Identities=17% Similarity=0.127 Sum_probs=264.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++|+|+
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 5688999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
||.+|.+++.++++++++++++++.......... .... +......
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~~~~------------------~~~~~~~----- 152 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL------------PCVP------------------VRHLPAA----- 152 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS------------CEEE------------------GGGCCCC-----
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccCC------------ceee------------------eccCCcC-----
Confidence 9999999999999999999999765421100000 0000 0000000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
..........++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+++++|.+|+.|+
T Consensus 153 -~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 153 -PASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp -CCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred -CccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 0111122346799999999999999999999999999877655 45678999999999999999999999999999999
Q ss_pred EEEEec-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceec
Q 008848 424 TLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (551)
Q Consensus 424 ~lvl~~-~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (551)
++++.+ ..+++..+++.|+++++|++.++|++++.|.+.. ..++++||.+++|||++++++.+++...+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 999975 3468899999999999999999999999998643 345889999999999999998888887777789999
Q ss_pred cccccccccccccCCc---CCCCCcCccCCCCCCceEEEECCCCCc-cCCCC
Q 008848 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YVRTF 550 (551)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~g~~v~IlD~~g~~-vp~Gv 550 (551)
.||+||+++.++.... ......+++|+|++|++++|+|++|++ +|+|+
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~ 359 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDR 359 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSC
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCC
Confidence 9999999875443222 123456799999999999999999988 78886
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=443.22 Aligned_cols=340 Identities=19% Similarity=0.208 Sum_probs=278.5
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 45789999999986321 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++.... .............+++++.. ..+...++++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987532 12222222222233333211 1233455565543221
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh----hcCCCCCCEEEEecCcccchhh-HHHHHH
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (551)
..+.....++|++||+|||||||.||||+++|+++++.+.+... .+.+.++|++++.+|++|+.++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233456899999999999999999999999999887765433 3568899999999999999998 457889
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCC
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (551)
+..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++++.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999987 57889999999999999999999999999987666667899999999999999999999999998778
Q ss_pred ceeccccccccccccccCCc----CCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 499 AIIESCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+++|.||+||++..++.... ......+++|+|++|++++|+| ++|+++|+|.
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~ 381 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQ 381 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTC
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCC
Confidence 99999999999865433211 1234568999999999999999 6799999986
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-51 Score=442.78 Aligned_cols=344 Identities=15% Similarity=0.098 Sum_probs=282.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 28 ~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 28 AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEcc
Confidence 457899999999987322223445999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
||.++.+++.+++++++++++|++.... ..............+++.. ....++.++......
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-- 169 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSE-- 169 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCS--
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCcc--
Confidence 9999999999999999999999997532 2222333333322222221 123356666654432
Q ss_pred CCCCCCCCCCC-CCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhC
Q 008848 344 RPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (551)
Q Consensus 344 ~~~~~~~~~~~-~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (551)
........ ++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.++..|
T Consensus 170 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 246 (549)
T 3g7s_A 170 ---DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVG 246 (549)
T ss_dssp ---CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHC
T ss_pred ---ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcC
Confidence 11122223 38999999999999999999999999999988888888999999999999999999987788899999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCC--CCCCCccEEEeecCCCChhhHHHHHHh----cc
Q 008848 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSK----AW 496 (551)
Q Consensus 423 ~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~--~~l~sLr~i~~gGe~l~~~~~~~~~~~----~~ 496 (551)
+++++.+ .+++..+++.|+++++|++.++|++++.|++...... .++++||.+++|||++++++.+++.+. ++
T Consensus 247 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 247 NEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred ceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcC
Confidence 9999987 6789999999999999999999999999987643332 578999999999999999999888776 43
Q ss_pred --CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 497 --YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
.++++|.||+||+++.++..........+++|+|++|++++|+| ++|+++|+|.
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~ 382 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGE 382 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTC
T ss_pred CccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCC
Confidence 37899999999998766555444445678999999999999999 8999999986
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=465.21 Aligned_cols=404 Identities=17% Similarity=0.161 Sum_probs=284.5
Q ss_pred HHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCCCCCCCCcCCCCcchhhhhhccccccCCCCCCceEEEEecCC
Q 008848 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDR 201 (551)
Q Consensus 122 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~ 201 (551)
++.+..+++++..++..+++.+......+.....-... ..........+.. ..+. .+++++||++|+++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl~-~~l~--~~a~~~pd~~Al~~~~~~ 86 (979)
T 3tsy_A 14 LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSLH-DYIF--QNISEFATKPCLINGPTG 86 (979)
T ss_dssp -------------------------------CCCBCCS----SCCCCCCTTSCHH-HHHT--TTGGGTTTSEEEEETTTC
T ss_pred cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCHH-HHHH--HHHHhCCCCeEEEECCCC
Confidence 88999999999999999988875444333222211110 0000001112222 2222 245889999999986321
Q ss_pred CCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcC
Q 008848 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280 (551)
Q Consensus 202 ~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~ 280 (551)
+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++
T Consensus 87 ------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~ 160 (979)
T 3tsy_A 87 ------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160 (979)
T ss_dssp ------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHT
T ss_pred ------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcC
Confidence 3899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEE
Q 008848 281 AKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360 (551)
Q Consensus 281 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 360 (551)
+++||+++.+. +....+.......++.+.... ......+...+.++...... ...........++|++|
T Consensus 161 ~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ 229 (979)
T 3tsy_A 161 TKLIITEARYV------DKIKPLQNDDGVVIVCIDDNE---SVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVA 229 (979)
T ss_dssp EEEEEECSTTT------TTSHHHHHTSCCEEEECCCCT---TSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEE
T ss_pred CeEEEEChHHH------HHHHHHhhcCCceEEEeCCcc---cccCCcccccHHHHhhcccc--ccccCCcCCCCccceEE
Confidence 99999997642 223333322222333332211 11112233445555433221 00112233457899999
Q ss_pred EEecCCCCCCCceEEecchhhHHHHHHhhh----hcCCCCCCEEEEecCcccchhhH-HHHHHHHhCCEEEEecCCCChh
Q 008848 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLER 435 (551)
Q Consensus 361 iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~~lvl~~~~~~~~ 435 (551)
|+|||||||+||||+++|+++++.+.+... .+.+.++|++++.+|++|+.++. .++.++..|+++++.+ .+++.
T Consensus 230 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~ 308 (979)
T 3tsy_A 230 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEIN 308 (979)
T ss_dssp CCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHH
T ss_pred EEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHH
Confidence 999999999999999999999887765533 45688999999999999999984 4788899999999987 56889
Q ss_pred hHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecccccccccccccc
Q 008848 436 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 515 (551)
Q Consensus 436 ~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 515 (551)
.+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+++++++|.||+||++..++.
T Consensus 309 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~ 388 (979)
T 3tsy_A 309 LLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388 (979)
T ss_dssp HHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEE
T ss_pred HHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHh
Confidence 99999999999999999999999998766667789999999999999999999999999887999999999999865443
Q ss_pred CC----cCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 516 GS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 516 ~~----~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
.. ...+...+++|+|++|++++|+| ++|+++|+|.
T Consensus 389 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~ 428 (979)
T 3tsy_A 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQ 428 (979)
T ss_dssp CGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTC
T ss_pred CCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCC
Confidence 21 12234568999999999999999 5699999986
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=433.60 Aligned_cols=361 Identities=19% Similarity=0.211 Sum_probs=283.0
Q ss_pred CCCcCCCCcchhhhhhccccc---cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEE
Q 008848 164 GGTWLPGSVLNIAECCLLPSN---HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAI 238 (551)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~---~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i 238 (551)
...|......+....++.+++ +++++||++|+++.+. .+..+++||+||+++++++|++|++. +++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~---~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNG---KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECS---SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcC---CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 345655555565555555432 1334999999998542 12245899999999999999999986 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecC
Q 008848 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPA 316 (551)
Q Consensus 239 ~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~ 316 (551)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++... +....+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999987532 122222222332 1222321
Q ss_pred CCCCCCCCCCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH--HHHHhhhhcCC
Q 008848 317 IGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDL 394 (551)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~--~~~~~~~~~~~ 394 (551)
.. ..+...+++++..... ........+++++||+|||||||.||||+++|+ ++. ..... ..+++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~ 244 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL 244 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC
T ss_pred cC-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC
Confidence 11 1123456666544322 112233467899999999999999999999999 544 34444 66788
Q ss_pred CCCCEEEEecCcccchhhH-HHHHHHHhCCEEEEecC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCC
Q 008848 395 KVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (551)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~~lvl~~~-~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~s 472 (551)
+++|++++.+|++|+.+++ .++.++..|+++++.+. .+++..+++.|+++++|++.++|++++.|.+.. ....++++
T Consensus 245 ~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~ 323 (570)
T 3c5e_A 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPH 323 (570)
T ss_dssp CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTT
T ss_pred CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccccccc
Confidence 9999999999999999986 68899999999999864 568899999999999999999999999998763 33456899
Q ss_pred ccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 473 Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||.+++|||++++++.+++.+.++ ++++|.||+||+++.++.. .......+++|+|++|++++|+|++|+++|+|.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~ 399 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQTG-LDIRESYGQTETGLTCMVS-KTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT 399 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHHS-CCCEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCCEEEECTTSCBCCTTC
T ss_pred ceEEEEcCCcCCHHHHHHHHHHhC-CchhhccchhhcccceecC-cccccCCCcccccCCCceEEEECCCCCCCCCCC
Confidence 999999999999999999988774 8899999999998654432 223446689999999999999999999999985
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-51 Score=434.05 Aligned_cols=326 Identities=18% Similarity=0.165 Sum_probs=275.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
+++++||++|+++.++ ++||+||+++++++|++|++. +++|++|+++++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 81 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81 (511)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence 4578999999998776 999999999999999999885 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
++|.++.+++.+++++++++++|+++..... . ... ......++++......
T Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-----~-------~~~----------------~~~~~~~~~~~~~~~~- 132 (511)
T 3e7w_A 82 VDLSIPSERIAKIIESSGAELLIHAAGLSID-----A-------VGQ----------------QIQTVSAEELLENEGG- 132 (511)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEESSSCCTT-----C-------CCC----------------SSCEEEHHHHHTSCSC-
T ss_pred cCCCChHHHHHHHHHhCCCCEEEecccccch-----h-------ccc----------------ccceecHhhhhccccC-
Confidence 9999999999999999999999997642100 0 000 0012234444433221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhC
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (551)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|
T Consensus 133 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 209 (511)
T 3e7w_A 133 ---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSG 209 (511)
T ss_dssp ---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTT
T ss_pred ---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcC
Confidence 11122345678999999999999999999999999999998888889999999999999999999998899999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 423 ~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
+++++.+.. .++..+++.|+++++|++.++|++++.++........+++++|.+++|||++++++.+++.+.++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i 289 (511)
T 3e7w_A 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKI 289 (511)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEE
Confidence 999997632 478889999999999999999999999998765566678999999999999999999999999977899
Q ss_pred eccccccccccccccCCcC----CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+|.||+||+++.++..... ......++|+|++|++++|+|++|+++|+|.
T Consensus 290 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~ 343 (511)
T 3e7w_A 290 FNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGE 343 (511)
T ss_dssp EECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTC
T ss_pred EeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCC
Confidence 9999999998654432221 2334568999999999999999999999986
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-51 Score=436.52 Aligned_cols=328 Identities=17% Similarity=0.196 Sum_probs=271.2
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 10 ~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl 81 (512)
T 3fce_A 10 WAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPV 81 (512)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 3478999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++....... .. ..++. ...+.++......
T Consensus 82 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~------------~~--~~~~~-------------~~~~~~~~~~~~~-- 132 (512)
T 3fce_A 82 DLSIPADRVQRIAENSGAKLLLSATAVTVTD------------LP--VRIVS-------------EDNLKDIFFTHKG-- 132 (512)
T ss_dssp ETTSCHHHHHHHHHHSCCCEEEESSCCCSSC------------CS--SEEEE-------------THHHHHHHHHTTT--
T ss_pred CCCCcHHHHHHHHHhcCCCEEEecCcccccc------------cc--cceec-------------hhhhhhhcccccc--
Confidence 9999999999999999999999986421100 00 00110 0012222211111
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|+
T Consensus 133 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 211 (512)
T 3fce_A 133 -NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGG 211 (512)
T ss_dssp -CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTC
T ss_pred -cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCC
Confidence 1111223456799999999999999999999999999999988888899999999999999999999988999999999
Q ss_pred EEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 424 TLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 424 ~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
++++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++|||++++++.+++.+.+++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~ 291 (512)
T 3fce_A 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIM 291 (512)
T ss_dssp EEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred EEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEE
Confidence 99998642 4788999999999999999999999999887666667799999999999999999999999999878999
Q ss_pred ccccccccccccccCCcC----CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
|.||+||+++.++..... ......++|+|+++++++|+|++|+++|+|.
T Consensus 292 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~ 344 (512)
T 3fce_A 292 NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGE 344 (512)
T ss_dssp EEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTS
T ss_pred eCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCC
Confidence 999999998754432221 1235578999999999999999999999985
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-51 Score=437.49 Aligned_cols=343 Identities=16% Similarity=0.133 Sum_probs=273.7
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 4578999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
++.++.+++.+++++++++++|++...... ........+...... ..+++.... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDWIETPAE- 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHHHHSCCS-
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhhhhcccc-
Confidence 999999999999999999999998753210 001112222222222 222222111 011234444433221
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH--HHHHHHH
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~ 420 (551)
.........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++..|++|.++.. .++.+++
T Consensus 181 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 257 (544)
T 3o83_A 181 ---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257 (544)
T ss_dssp ---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHH
Confidence 11111345679999999999999999999999999999998888889999999999999999877764 5889999
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
.|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.++ +++
T Consensus 258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~~ 335 (544)
T 3o83_A 258 AGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN-CKL 335 (544)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC-SEE
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC-CcE
Confidence 999999987 468899999999999999999999999998765444556889999999999999999999988774 899
Q ss_pred eccccccccccccccCCcCCCCCcCccCCCC-CCceEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~g~~v~IlD~~g~~vp~Gv 550 (551)
+|.||+||+++.++..........+++|+|+ ++++++|+|++|+++|+|.
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~ 386 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGE 386 (544)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTC
T ss_pred EeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCC
Confidence 9999999987654332222223346899997 8999999999999999986
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-51 Score=437.13 Aligned_cols=333 Identities=21% Similarity=0.166 Sum_probs=270.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+++|+++.+. .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 25 ~a~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPST------DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGG------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCc------CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 4578999999998643 24899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
+|.++.+++.+++++++++++|++.... +....+...... .++.+. ....+.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHHHHhhccCc
Confidence 9999999999999999999999987532 122222221111 111110 01123333333221
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
..+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 122334567999999999999999999999999999998888888999999999999999999999876667779
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++... +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999986 5789999999999999999999999999987655455678999999999999999999988876 58999
Q ss_pred ccccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCCCCccCCC
Q 008848 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYVRT 549 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~g~~vp~G 549 (551)
|.||+||+++.++..... .....+++|+|+++++++|+|++|+++|.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g 361 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG 361 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC
Confidence 999999998654443322 245678999999999999999999999876
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-51 Score=439.07 Aligned_cols=339 Identities=15% Similarity=0.111 Sum_probs=271.1
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 34 ~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 34 RAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105 (539)
T ss_dssp HHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecC
Confidence 3478999999998766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
+|.++.+++.+++++++++++|+++.... .........+....+. +.+++.... ..+.++......
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~- 172 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE- 172 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC-
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc-
Confidence 99999999999999999999999875310 0000112222222222 222221110 012222221111
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH--HHHHHHH
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~ 420 (551)
........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+.++. .++.+|+
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 248 (539)
T 1mdb_A 173 ----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248 (539)
T ss_dssp ----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ----ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHH
Confidence 1112344678999999999999999999999999999888877788999999999999999998875 5899999
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
.|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.++ +++
T Consensus 249 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~ 326 (539)
T 1mdb_A 249 AGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTL 326 (539)
T ss_dssp TTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-SEE
T ss_pred hCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC-CcE
Confidence 999999976 478899999999999999999999999998765445567899999999999999999999988775 899
Q ss_pred eccccccccccccccCCcCCCCCcCccCCCCCCc-eEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~-~v~IlD~~g~~vp~Gv 550 (551)
+|.||+||+++.++..........+++|+|+++. +++|+|++|+++|+|.
T Consensus 327 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~ 377 (539)
T 1mdb_A 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE 377 (539)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTC
T ss_pred EEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCC
Confidence 9999999976543221111112346899999764 8999999999999986
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-50 Score=428.36 Aligned_cols=334 Identities=18% Similarity=0.142 Sum_probs=268.9
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++|+++|+...... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+|
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 4678888887753210 13899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (551)
|.++.+++.+++++++++++|+++... .....+.......+..+... ....+.+.......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--- 145 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAGASE--- 145 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSCS---
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhcCCC---
Confidence 999999999999999999999997642 22222222222222222111 11112222211111
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhH-HHHHHHHhCC
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~ 423 (551)
........++|+|||+|||||||.||||+++|+++.+...+....++++++|++++.+|++|+.+.+ .++.+++.|+
T Consensus 146 --~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 146 --AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp --CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred --CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1222345679999999999999999999999999999988888889999999999999999998864 4678899999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
++++.+ .+++..+++.++ ++|++.++|+++..|++.......+++++|.+++|||++++++.+++...++ ++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccce
Confidence 999987 578899999998 8999999999999999876666667899999999999999999999988775 789999
Q ss_pred ccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
||+||+++.++ .........+++|+|++|++++|+| ++|+++|+|.
T Consensus 300 YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~ 346 (503)
T 4fuq_A 300 YGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGD 346 (503)
T ss_dssp CEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTC
T ss_pred EcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCC
Confidence 99999986533 2323345568899999999999999 8899999986
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=433.38 Aligned_cols=337 Identities=19% Similarity=0.174 Sum_probs=269.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 27 ~a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 27 AAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp HHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEec
Confidence 3478999999996321 2235899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc--eEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
+|.++.+++.+++++++++++|+++.+. +....+....+.. ++++.... ......++++......
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 169 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEEALGEEAD 169 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHHHCCSCCC
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHHHhhccCC
Confidence 9999999999999999999999987532 2222222222221 22222110 0123356665433221
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHh--hhhcCCCCCCEEEEecCcccchhhHHHHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l 419 (551)
.....+++++||+|||||||.||||+++|+++++..... ...++++++|++++.+|++|+.++..++.++
T Consensus 170 --------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l 241 (541)
T 1v25_A 170 --------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 241 (541)
T ss_dssp --------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHH
T ss_pred --------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHH
Confidence 123457899999999999999999999999998776552 3456788999999999999999887788999
Q ss_pred HhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 420 ~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
+.|+++++.+..+++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++ ..+ +++
T Consensus 242 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~ 319 (541)
T 1v25_A 242 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVE 319 (541)
T ss_dssp HHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCE
T ss_pred hcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCc
Confidence 999999998755689999999999999999999999999987544444568999999999999999999988 555 489
Q ss_pred eeccccccccccccccCCcCC----------CCCcCccCCCCCCceEEEECCCCCccCC
Q 008848 500 IIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYVR 548 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~g~~v~IlD~~g~~vp~ 548 (551)
++|.||+||++..++...... ....+++|+|++|++++|+|++|+++|.
T Consensus 320 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~ 378 (541)
T 1v25_A 320 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPK 378 (541)
T ss_dssp EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCS
T ss_pred eeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCC
Confidence 999999999986544432210 0235789999999999999999999984
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=436.07 Aligned_cols=346 Identities=16% Similarity=0.136 Sum_probs=271.7
Q ss_pred CCCCCCceEEE---EecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEE
Q 008848 186 RRKEDNTVAIV---WREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (551)
Q Consensus 186 a~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~v 261 (551)
++++|+++|++ +... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++
T Consensus 30 a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 103 (550)
T 3rix_A 30 MKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVA 103 (550)
T ss_dssp HHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEE
T ss_pred HHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEe
Confidence 46788888865 3211 24899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCc-eEEecCCCCCCCCCCCCCCcchHHhhccCC
Q 008848 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340 (551)
Q Consensus 262 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (551)
|++|.++.+++.+++++++++++|+++... +....+....+.. .+++..... ......++.++.....
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 104 PANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKT-----DYQGFQSMYTFVTSHL 172 (550)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSS-----CBTTBCBHHHHHHHHC
T ss_pred ecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCc-----cccCcccHHHHhhccc
Confidence 999999999999999999999999987532 2222333333322 222221111 0123445666554332
Q ss_pred CCCC-CCCC-CCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh---cCCCCCCEEEEecCcccchhhHHH
Q 008848 341 YHPR-PNYY-SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVIL 415 (551)
Q Consensus 341 ~~~~-~~~~-~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~~ 415 (551)
.... .... +.....++++|||+|||||||.||||+++|+++.+.+.+.... +++.+++++++.+|++|+.+++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence 1000 0011 1122245789999999999999999999999998887766544 578899999999999999999888
Q ss_pred HHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhc
Q 008848 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (551)
Q Consensus 416 ~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 495 (551)
+.+++.|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 253 LGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 99999999999986 57889999999999999999999999999987766677899999999999999999999999888
Q ss_pred cCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+...++|.||+||+++.++... ......+++|+|++|++++|+| ++|+++|+|.
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~ 386 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ 386 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECC-TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTC
T ss_pred CCCccccccCcCccccceecCC-CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCC
Confidence 7556999999999987654433 3345678999999999999999 5799999985
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-50 Score=436.52 Aligned_cols=337 Identities=15% Similarity=0.138 Sum_probs=269.8
Q ss_pred CCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCC
Q 008848 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (551)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~ 268 (551)
||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999998776 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCC
Q 008848 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (551)
Q Consensus 269 ~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (551)
.+++.++++++++++++++....... .......+...... ..+.+.... ....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALFS-GDDFLNTFVTEHSSIRVVQLLNDS---------GEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHHSTTCCEEEEETCC---------STTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEecccccccc-cHHHHHHHhhcCCccceeeecccc---------cccchhhhhccccc-----c
Confidence 99999999999999999997532100 00111222222222 222221111 11234444433221 1
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh--HHHHHHHHhCCEE
Q 008848 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLNGATL 425 (551)
Q Consensus 348 ~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~l~~G~~l 425 (551)
.......++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.++. ++++.+++.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22234567999999999999999999999999999999888888999999999999998876665 4689999999999
Q ss_pred EEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc--CCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 426 vl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
++.+ .+++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++...++ ++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG-CQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTC-SEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhC-CcEEEE
Confidence 9986 46888999999999999999999999998765322 2336899999999999999999999988775 899999
Q ss_pred ccccccccccccCCcCCCCCcCccCCCC-CCceEEEECCCCCccCCCCC
Q 008848 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYVRTFS 551 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~g~~v~IlD~~g~~vp~Gv~ 551 (551)
||+||+++.++...........++|+|+ ++++++|+|++|+++|+|+.
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~ 382 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV 382 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc
Confidence 9999998654432222222346899997 78899999999999999963
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=427.23 Aligned_cols=349 Identities=19% Similarity=0.178 Sum_probs=269.0
Q ss_pred chhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 008848 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (551)
Q Consensus 173 ~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~l 251 (551)
.|.....+..+ ++ +||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|
T Consensus 23 ~~~~~~~l~~~--~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 23 FNFAAYLFRLN--ET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCHHHHHHHHT--GG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred eeHHHHHHHhh--hc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 34344444433 46 999999998765 999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC---CceEEecCCCCCCCCCCCCC
Q 008848 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQ 328 (551)
Q Consensus 252 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~vv~~~~~~~~~~~~~~ 328 (551)
||+++|++++|+++.++.+++.+++++++++++|+++... +.......... ..++++..... ....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----cccc
Confidence 9999999999999999999999999999999999987532 11222222111 12222221100 0001
Q ss_pred CcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhh-HHHHHHhhhhcCCCCCCEEEEecCcc
Q 008848 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLG 407 (551)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (551)
...++++...... ........++|++||+|||||||.||||+++|+++ .+........++++++|++++.+|++
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 161 APLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTT
T ss_pred ccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHH
Confidence 2246666543221 11223456799999999999999999999999998 56665555567889999999999999
Q ss_pred cchhhHH-HHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChh
Q 008848 408 WVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (551)
Q Consensus 408 ~~~~~~~-~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~ 486 (551)
|+.++.. ++.++..|+++++.+..+++..+++.|+++++|++.++|+++..|++..........++|.+++|||+++++
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~ 315 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPRE 315 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHH
Confidence 9999854 678999999999886567889999999999999999999999999876433322123899999999999999
Q ss_pred hHHHHHHhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+.+++.+.++ ++++|.||+||++..++.... .....+++|+|++|++++|+|++|+++|+|.
T Consensus 316 ~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~ 377 (529)
T 2v7b_A 316 IGERFTAHFG-CEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVPGYEIELRDEAGHAVPDGE 377 (529)
T ss_dssp HHHHHHHHHS-CCEEEEEECTTTSSEEEECCT-TCCCTTSCCEECTTCEEEEECTTSCBCCTTS
T ss_pred HHHHHHHHhC-CceeeeEchhhcCceeecccc-CCCccCCcccCCCCCEEEEECCCCCCCCCCC
Confidence 9999988774 899999999999654433322 2245679999999999999999999999985
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-50 Score=435.68 Aligned_cols=320 Identities=18% Similarity=0.170 Sum_probs=265.2
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 84 ~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 84 QAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEc
Confidence 4578999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++...... ......++.... .....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~----------------~~~~~---- 202 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGR-------------LTGTTTLYVEDE----------------AASDA---- 202 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------------SCSSEEEECCC--------------------------
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchhhhc-------------ccCCcceeeecc----------------ccccc----
Confidence 999999999999999999999998753210 111111111000 00000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
..........++|++||+|||||||.||||+++|+++.+...+ ...++++++|++++.+|++|+.+.+.++.+++.|+
T Consensus 203 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 280 (570)
T 4gr5_A 203 -PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280 (570)
T ss_dssp --CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTC
T ss_pred -cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCC
Confidence 0011223456799999999999999999999999998876654 35567899999999999999988888999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceec
Q 008848 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (551)
Q Consensus 424 ~lvl~~~-~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (551)
++++.+. .+++..+++.|+++++|++.++|++++.|.+... .++++||.+++|||++++++.+++.+.+++++++|
T Consensus 281 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 357 (570)
T 4gr5_A 281 RCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357 (570)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE
Confidence 9999864 4688899999999999999999999999987542 34889999999999999999999988887789999
Q ss_pred cccccccccccccCCcC---CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 503 SCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 503 ~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.||+||+++.++..... ......++|+|++|++++|+|++|+++|+|.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~ 408 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGA 408 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCC
Confidence 99999998654432221 2334568999999999999999999999985
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-50 Score=426.78 Aligned_cols=331 Identities=12% Similarity=0.037 Sum_probs=267.3
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 15 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 15 NAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPV 86 (509)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEec
Confidence 4578999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++..+. ...............++.... ....+.++......
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-- 149 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD-- 149 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC--
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC--
Confidence 9999999999999999999999987532 111111122222222221111 11122233221111
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
.........++|++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++...+.+++.|+
T Consensus 150 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g 227 (509)
T 3ivr_A 150 --TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGG 227 (509)
T ss_dssp --SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred --CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCC
Confidence 112233456799999999999999999999999999999988888899999999999999999999988777777777
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
+.++.. .+++..+++.|+++++|++.++|+++..|++.. ...+++++|.++.||++ +..+++...+++++++|.
T Consensus 228 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 228 ASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp EEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred cEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 777766 678999999999999999999999999998765 34568899999999987 777888888877899999
Q ss_pred ccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
||+||+++.++..... ....++|+|++|++++|+|++|+++|+|.
T Consensus 302 YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~ 346 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGE 346 (509)
T ss_dssp EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTC
T ss_pred cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCC
Confidence 9999998754443322 23346999999999999999999999986
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=428.24 Aligned_cols=339 Identities=18% Similarity=0.115 Sum_probs=272.5
Q ss_pred CCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
++++ |++|+++.+. .+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 36 ~~~~-~~~A~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 36 YAKL-GAIAFTNAVT------GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHH-TCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred hccc-CCceEEEcCC------CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 3567 9999997421 13899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCC--CceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
|.++.+++.+++++++++++|+++... +....+....+ ..++++.... ...+...|+++......
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~- 175 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKV------DYRGYQCLDTFIKRNTP- 175 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSS------CBTTBCBHHHHHHHTSC-
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCcc------cccccccHHHHHhcCcc-
Confidence 999999999999999999999987532 12222222222 1222222110 00122346666554321
Q ss_pred CCCCCCCCCCC------CCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh---cCCCCCCEEEEecCcccchhhH
Q 008848 343 PRPNYYSPVYN------PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPV 413 (551)
Q Consensus 343 ~~~~~~~~~~~------~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~ 413 (551)
. ..+.... .+++++||+|||||||.||||+++|+++.+.+.+.... ++++++|++++.+|++|+.+++
T Consensus 176 -~--~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 252 (548)
T 2d1s_A 176 -P--GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252 (548)
T ss_dssp -T--TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred -c--cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHH
Confidence 0 0111111 23899999999999999999999999999888776655 6788999999999999999987
Q ss_pred H-HHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHH
Q 008848 414 I-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (551)
Q Consensus 414 ~-~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~ 492 (551)
. ++.++ .|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.
T Consensus 253 ~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~ 330 (548)
T 2d1s_A 253 TTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVA 330 (548)
T ss_dssp HHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHH
Confidence 6 55666 999999986 57899999999999999999999999999987655556789999999999999999999999
Q ss_pred HhccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 493 SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+.+++++++|.||+||++..++. ........+++|+|++|++++|+| ++|+++|+|.
T Consensus 331 ~~~~~~~i~~~YG~TE~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~ 388 (548)
T 2d1s_A 331 RRFNLPGVRQGYGLTETTSAIII-TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNR 388 (548)
T ss_dssp HHTTCSCCEEEEECGGGSSEEEE-CCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTC
T ss_pred HHcCCCceeeccccccccceeee-cCcccCCCCCCCccCCCceEEEEeCCcCccCCCCC
Confidence 98877889999999999865444 222335668999999999999999 7899999985
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=420.81 Aligned_cols=328 Identities=16% Similarity=0.094 Sum_probs=261.0
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+. .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 11 ~a~~~p~~~a~~~~~~------~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 11 AATRAPDHCALAVPAR------GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84 (504)
T ss_dssp HHHHCTTSEEEEETTT------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHhCCCceEEEEcCC------CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 3478999999998621 13899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEe--ecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
||.++.+++.+++++++++++|+ +... ...+........ ++ .++++......
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~----------------~~~~~~~~~~~ 138 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAIFQSGSGAR-II----------------FLGDLVRDGEP 138 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHHHHHCCCCE-EE----------------EGGGTEETTEE
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhh---------hhhhhhccccce-eE----------------EecchhhcCcc
Confidence 99999999999999999999999 5432 111101111111 11 12233222100
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCC--CCCCEEEEecCcccchhh-HHHHHH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGP-VILFSS 418 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (551)
.............++++|||+|||||||.||||+++|+++.+.+.+....+++ ++++++++.+|++|+.++ ..++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 218 (504)
T 1t5h_X 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218 (504)
T ss_dssp CCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred cccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence 00000111133467899999999999999999999999999888877777787 889999999999999997 568899
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC-c-cCCCCCCCccEEEeecCCCChhhHHHHHHhcc
Q 008848 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-C-LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496 (551)
Q Consensus 419 l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~-~-~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~ 496 (551)
++.|+++++.+ .+++..+++.|+++++|++.++|++++.|.+.. . ....++++||.+++|||++++++.+++.+.++
T Consensus 219 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~ 297 (504)
T 1t5h_X 219 LALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP 297 (504)
T ss_dssp HHTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC
T ss_pred HHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC
Confidence 99999999987 478899999999999999999999999998753 1 23456899999999999999999999998876
Q ss_pred CCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCC---CccCCCC
Q 008848 497 YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG---VPYVRTF 550 (551)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g---~~vp~Gv 550 (551)
++++|.||+||+++. .. .. ....+++|+|+++++++|+|++| +++|+|.
T Consensus 298 -~~~~~~YG~TE~~~~-~~-~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~ 349 (504)
T 1t5h_X 298 -GEKVNIYGTTEAMNS-LY-MR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGE 349 (504)
T ss_dssp -SEEEEEEEETTTEEE-EE-EE--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTC
T ss_pred -cceeeeecccccccc-cc-cc--CCCCCccccCCCCCceeEEeccCCCCCcCCCCC
Confidence 789999999998432 22 11 34567899999999999999888 9999885
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=426.92 Aligned_cols=326 Identities=15% Similarity=0.084 Sum_probs=267.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+.+.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 13 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl 84 (521)
T 3l8c_A 13 FAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPV 84 (521)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEec
Confidence 4478999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|+++........ .. ...+.++......
T Consensus 85 ~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--------------~~----------------~~~~~~~~~~~~~-- 132 (521)
T 3l8c_A 85 DVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--------------IS----------------LVSLSEIESAKLA-- 132 (521)
T ss_dssp ETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--------------SE----------------EEEHHHHHHHHHH--
T ss_pred CccccHHHHHHHHHhCCCCEEEecCcccccccc--------------Cc----------------ccchhhhhhcccc--
Confidence 999999999999999999999998764211000 00 0111221111000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhh--cCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
...........+++++||+|||||||.||||+++|+++.+...+.... +++.+++++++..|++|+.+.+.++.+++.
T Consensus 133 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 212 (521)
T 3l8c_A 133 EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLAL 212 (521)
T ss_dssp TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHT
T ss_pred cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhc
Confidence 000112234567999999999999999999999999999877766554 678899999999999999999888999999
Q ss_pred CCEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 422 GATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 422 G~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
|+++++.+.. .++..+++.|+++++|++.++|+++..+.........++++||.+++|||++++++.+++.+.+++++
T Consensus 213 G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 292 (521)
T 3l8c_A 213 GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAK 292 (521)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCE
T ss_pred CCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCce
Confidence 9999998642 37788999999999999999999999998776556677899999999999999999999999987789
Q ss_pred eeccccccccccccccCCcC----CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 500 IIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++|.||+||+++.++..... .....+++|+|++|++++|+|++|+++|+|.
T Consensus 293 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~ 347 (521)
T 3l8c_A 293 IINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGE 347 (521)
T ss_dssp EEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTC
T ss_pred EEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCC
Confidence 99999999998654432221 1234568999999999999999999999985
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=426.66 Aligned_cols=318 Identities=18% Similarity=0.150 Sum_probs=256.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 48 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 48 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEe
Confidence 4578999999998766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcC-CCceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
+|.++.+++.+++++++++++|+++... ..+.... ...+..+.. . .+ .. ...
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~--~-----------~~---~~-~~~- 172 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEE--D-----------TI---KI-REG- 172 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCC--S-----------TT---TT-SCC-
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchh---------hhhhhccccCceeeecc--h-----------hh---cc-ccC-
Confidence 9999999999999999999999987532 1111100 011111110 0 00 00 000
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhC
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (551)
........++|+|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.|
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 248 (563)
T 1amu_A 173 ----TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 248 (563)
T ss_dssp ----SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred ----ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCC
Confidence 0111234578999999999999999999999999998888877788999999999999999999998899999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 423 ~~lvl~~~~--~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++|||++++++.+++.+. +++
T Consensus 249 ~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~ 319 (563)
T 1amu_A 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTY 319 (563)
T ss_dssp CEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEE
T ss_pred CEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeE
Confidence 999998632 4788899999999999999999999877532 36799999999999999999888654 689
Q ss_pred eccccccccccccccCCcC--CCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+|.||+||++++++..... .....+++|+|++|++++|+|++|+++|+|.
T Consensus 320 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~ 371 (563)
T 1amu_A 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE 371 (563)
T ss_dssp EEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred EEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCC
Confidence 9999999998654433221 1235578999999999999999999999985
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-50 Score=424.43 Aligned_cols=336 Identities=13% Similarity=0.097 Sum_probs=257.8
Q ss_pred cCCCCCCceEEEEecCC-CCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 008848 185 HRRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vp 262 (551)
+++++||++|+++.+.. +..+..+++||+||+++++++|++|+++ + +||+|+|+++|++++++++|||+++|++++|
T Consensus 33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 45789999999987621 1123446999999999999999999999 8 9999999999999999999999999999999
Q ss_pred cCC---CCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC--ceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 263 IAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 263 l~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
+++ .++.+++.+++++++++++|++.... ............ ...++. ++.+..
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 169 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAV------DDVVQHVARRPGESPPSIIE----------------VDLLDL 169 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH------HHHHHTCC------CCEEEE----------------GGGSCT
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHH------HHHHHHHhccccccccceeE----------------eccccc
Confidence 999 78899999999999999999987532 111111111000 001111 111100
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCC------CCEEEEecCcccchh
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWVMG 411 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~~l~~~~~~~~~~ 411 (551)
.. ..........++++|||+|||||||+||||+++|+++++.+.+....+.+.+ +|++++.+|++|+++
T Consensus 170 ~~-----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 244 (480)
T 3t5a_A 170 DA-----PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244 (480)
T ss_dssp TC-----C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTH
T ss_pred cc-----ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccH
Confidence 00 0111223456789999999999999999999999999998888777777777 999999999999999
Q ss_pred h-HHHHHHHHhCCEEEEecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhc----CccCCCCCCCccEEEeecCCC
Q 008848 412 P-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGETS 483 (551)
Q Consensus 412 ~-~~~~~~l~~G~~lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~----~~~~~~~l~sLr~i~~gGe~l 483 (551)
+ +.++.+|+.|+++++.+.. .++..+++.|+++++| +..+|+++..++.. ......++++||.+++|||++
T Consensus 245 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l 323 (480)
T 3t5a_A 245 LVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERV 323 (480)
T ss_dssp HHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTC
T ss_pred HHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcC
Confidence 6 5688999999999997632 3788999999999999 88899988887653 233456789999999999999
Q ss_pred ChhhHHHHHHhcc-----CCceeccccccccccccccCCcCC------------------------CCCcCccCCCCCCc
Q 008848 484 NVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQ------------------------PQAFGAFSTATMTA 534 (551)
Q Consensus 484 ~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~~g~ 534 (551)
++++.+++.+.++ +++++|.||+||+++.++...... ....+++|+|++ +
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~ 402 (480)
T 3t5a_A 324 QAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-P 402 (480)
T ss_dssp CHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-S
T ss_pred CHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-C
Confidence 9999999988874 357999999999987655433221 123468999999 9
Q ss_pred eEEEECCC-CCccCCCC
Q 008848 535 GLVILDEC-GVPYVRTF 550 (551)
Q Consensus 535 ~v~IlD~~-g~~vp~Gv 550 (551)
+++|+|++ |+++|+|.
T Consensus 403 ~~~ivd~~~g~~~~~g~ 419 (480)
T 3t5a_A 403 IVRIVDSDTCIECPDGT 419 (480)
T ss_dssp EEEEEETTTTEECCTTB
T ss_pred EEEEEcCCCCcCCCCCC
Confidence 99999976 89999986
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=415.08 Aligned_cols=333 Identities=19% Similarity=0.182 Sum_probs=258.1
Q ss_pred cCCCCCCceEEEEecC--CCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEE
Q 008848 185 HRRKEDNTVAIVWRED--RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~--~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~v 261 (551)
+++++||++|+++.+. +...+..+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+|+|++++
T Consensus 29 ~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 29 WAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYV 107 (562)
T ss_dssp HHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 4578999999998652 11112345899999999999999999999 9 799999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCC
Q 008848 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (551)
Q Consensus 262 pl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (551)
|++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.......
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~~~~~~~ 165 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIENLSTQDT 165 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHHHHHSCC
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhhcccccc
Confidence 9999999999999999999999999865321100 0111111111 11122232222221
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh--------hcCCCCCCEEEEecCcccchhhH
Q 008848 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA--------HIDLKVGDVYCWPTNLGWVMGPV 413 (551)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~--------~~~~~~~d~~l~~~~~~~~~~~~ 413 (551)
........+++++||+|||||||.||||+++|+++.+...+... .+.+...+++++..+++|+.++.
T Consensus 166 -----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (562)
T 3ite_A 166 -----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG 240 (562)
T ss_dssp -----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH
T ss_pred -----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH
Confidence 11122345688999999999999999999999999877655433 24578889999999999999999
Q ss_pred HHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHH
Q 008848 414 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (551)
Q Consensus 414 ~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~ 493 (551)
.++.++..|+++++.+....+..+.+.|+++++|++.++|++++.+... ..++++||.+++|||++++++.+++..
T Consensus 241 ~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~ 316 (562)
T 3ite_A 241 EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSS 316 (562)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTT
T ss_pred HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhh
Confidence 8999999999999865322356788999999999999999999887533 345889999999999999999998876
Q ss_pred hccCCceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 494 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
.+ +++++|.||+||+++.++..........+++|+|++|++++|+|+ +++++|+|.
T Consensus 317 ~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~ 373 (562)
T 3ite_A 317 SD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGM 373 (562)
T ss_dssp CS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTS
T ss_pred CC-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCC
Confidence 54 489999999999987655444334455678999999999999995 588999985
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=417.03 Aligned_cols=333 Identities=13% Similarity=0.105 Sum_probs=263.6
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 20 ~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 20 RALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp HHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEe
Confidence 4578999999998642 2235999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC---HHHHHHHHHhcCceEEEeecceeccCccccchhHHh-hcCC--CceEEecCCCCCCCCCCCCCCcchHHhhc
Q 008848 264 ADSFA---AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL-GAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (551)
Q Consensus 264 ~~~~~---~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~--~~~~vv~~~~~~~~~~~~~~~~~~~~~~~ 337 (551)
+|.++ .+++.++++++++++++++...... ..... ...+ ....++. .+.+..
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 153 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK------FTADELNTNPKFLKIPAIA----------------LESIEL 153 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHH------HCC-----CCEETTEEEEE----------------GGGCCG
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHH------HHHhhhhhcccccccceee----------------chhccc
Confidence 99984 5799999999999999998753210 00000 0000 0011111 111110
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HH
Q 008848 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LF 416 (551)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~ 416 (551)
... .........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|++++.. ++
T Consensus 154 ~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 228 (590)
T 3kxw_A 154 NRS-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCIL 228 (590)
T ss_dssp GGG-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTH
T ss_pred ccc-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHH
Confidence 000 011223456799999999999999999999999999999988888899999999999999999999876 88
Q ss_pred HHHHhCCEEEEecCC-C--ChhhHHHHHHHcCCcEEEecHHHHHHHHhc---CccCCCCCCCccEEEeecCCCChhhHHH
Q 008848 417 SSFLNGATLALYQGS-P--LERSFGKFVQDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLW 490 (551)
Q Consensus 417 ~~l~~G~~lvl~~~~-~--~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~---~~~~~~~l~sLr~i~~gGe~l~~~~~~~ 490 (551)
.+++.|+++++.+.. + ++..+++.|+++++|++.++|+++..+.+. ......++++||.+++|||++++++.++
T Consensus 229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 308 (590)
T 3kxw_A 229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308 (590)
T ss_dssp HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence 899999999997632 1 678899999999999999999999998764 2334567899999999999999999999
Q ss_pred HHHhcc-----CCceeccccccccccccccCCcC--------------------------CCCCcCccCCCCCCceEEEE
Q 008848 491 LSSKAW-----YNAIIESCGGTELSSAYIQGSLL--------------------------QPQAFGAFSTATMTAGLVIL 539 (551)
Q Consensus 491 ~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~g~~v~Il 539 (551)
+.+.++ +.+++|.||+||+++.++..... .....+++|+|+++ ++|+
T Consensus 309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~ 386 (590)
T 3kxw_A 309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKII 386 (590)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEE
T ss_pred HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEE
Confidence 888764 34799999999998765533211 11234689999998 8899
Q ss_pred CCC-CCccCCCC
Q 008848 540 DEC-GVPYVRTF 550 (551)
Q Consensus 540 D~~-g~~vp~Gv 550 (551)
|++ |+++|+|.
T Consensus 387 d~~~~~~~~~g~ 398 (590)
T 3kxw_A 387 DPDTLIPCDFDQ 398 (590)
T ss_dssp CTTTCCBCCTTB
T ss_pred cCCCCcCCCCCC
Confidence 977 99999985
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=407.73 Aligned_cols=333 Identities=15% Similarity=0.157 Sum_probs=255.5
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~ 264 (551)
+++++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 4578999999998776 999999999999999999986 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCC-CCCcchHHhhccCCCCC
Q 008848 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR-EQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 343 (551)
+.++.+++.+++++++++++|++...............+. . ................ ......+.......
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIE----F-AGRDITTNGLLDNTMGIQYDTSNETVVPKES--- 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-------------------------------------CC---
T ss_pred ccCCHHHHHHHHHhcCCCEEEEccccccccccccccccce----e-eeeecccccccccccccccccchhhccccCC---
Confidence 9999999999999999999999976432211100000000 0 0000000000000000 00000001100000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
..........+++++||+|||||||.||||+++|+++.+...+....++++++|++++.+|++|+.++..++.+++.|+
T Consensus 152 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~ 230 (501)
T 3ipl_A 152 -PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGF 230 (501)
T ss_dssp -HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred -cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCc
Confidence 0001123456799999999999999999999999999999888888899999999999999999999988899999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceecc
Q 008848 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (551)
Q Consensus 424 ~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (551)
++++.+ .+++..+++.|+++++|++.++|++++.|.+...... .+||.+++|||++++++.+++.+. +++++|.
T Consensus 231 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~ 304 (501)
T 3ipl_A 231 TVRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNS 304 (501)
T ss_dssp EEEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred eEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence 999987 5789999999999999999999999999987653332 289999999999999999888763 5899999
Q ss_pred ccccccccccccCCcC-CCCCcCccCCCCCCceEEEECCC
Q 008848 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDEC 542 (551)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~g~~v~IlD~~ 542 (551)
||+||+++.++..... .....+++|+|++|++++|+|++
T Consensus 305 YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 344 (501)
T 3ipl_A 305 FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN 344 (501)
T ss_dssp EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC
T ss_pred ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC
Confidence 9999997654433221 12356789999999999999975
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=408.59 Aligned_cols=312 Identities=17% Similarity=0.138 Sum_probs=248.2
Q ss_pred cCCCCCC-ceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+++++|+ ++|+++.++ ++||+||+++++++|++|. .|++|+|+++|++++++++|||+|+|++++|+
T Consensus 31 ~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl 98 (505)
T 3nyq_A 31 APTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98 (505)
T ss_dssp CCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEc
Confidence 3467776 999999776 9999999999999998775 48999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
||.++.+++.+++++++++++|++.... .. .... ....+.+.. ...
T Consensus 99 ~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~---~~~~--~~~~~~~~~---------------------~~~--- 144 (505)
T 3nyq_A 99 NPKSGDKELAHILSDSAPSLVLAPPDAE-----LP---PALG--ALERVDVDV---------------------RAR--- 144 (505)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC---GGGT--TSEEEECCT---------------------TCC---
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCccc-----cc---hhhc--ccccccccc---------------------ccc---
Confidence 9999999999999999999999986421 00 0000 000111100 000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G 422 (551)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|..+. +.++.+|+.|
T Consensus 145 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 145 --GAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp --CCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred --cCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 0111233467899999999999999999999999999999888888999999999999999998886 4689999999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCcc---CCCCCCCccEEEeecCCCChhhHHHHHHhccCCc
Q 008848 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (551)
Q Consensus 423 ~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~---~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (551)
+++++.+ .+++..+++.+ ++++|++.++|+++..|.+.... ...+++++|.+++|||++++++.+++...++ ++
T Consensus 223 ~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~ 299 (505)
T 3nyq_A 223 GSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG-RR 299 (505)
T ss_dssp CEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS-CC
T ss_pred CEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC-Ce
Confidence 9999876 57888899999 89999999999999998863211 1234678999999999999999999887764 89
Q ss_pred eeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCC
Q 008848 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVR 548 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~ 548 (551)
++|.||+||+++.++. ........+++|+|++|++++|+|++|+++|+
T Consensus 300 ~~~~YG~TE~~~~~~~-~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~ 347 (505)
T 3nyq_A 300 VIERYGMTETLMNTSV-RADGEPRAGTVGVPLPGVELRLVEEDGTPIAA 347 (505)
T ss_dssp CEEEEEETTTEEEEEC-CTTSCCCTTCCCEECTTCEEEEC-----CCCC
T ss_pred eecccchhhccccccc-CCCCCCCCCCcccCCCCCEEEEECCCCCCccc
Confidence 9999999999865443 33334566899999999999999999999886
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-30 Score=260.59 Aligned_cols=184 Identities=18% Similarity=0.112 Sum_probs=157.5
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCCh
Q 008848 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (551)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~ 434 (551)
.+++|||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|+++++.++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 3789999999999999999999999999999888888999999999999999999999889999999999999874433
Q ss_pred hhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCceeccccccccccccc
Q 008848 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 514 (551)
Q Consensus 435 ~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (551)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 4567889999999999999999987653 34568999999999999999999988754 479999999999987544
Q ss_pred cCCcCCCCCcCccCCCCCCceEEEECCCCCcc
Q 008848 515 QGSLLQPQAFGAFSTATMTAGLVILDECGVPY 546 (551)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~v 546 (551)
.. .......+.+|.|.||+++.+ +++|+.+
T Consensus 190 ~~-~~~~~~~g~~~~~~pgv~~~~-~~~Gel~ 219 (358)
T 4gs5_A 190 LK-ALNGPEASELYVFLPGIQYGV-DERGCLH 219 (358)
T ss_dssp EE-ECSSTTCCSCEEECTTCEEEE-CTTSEEE
T ss_pred cc-cccccccceeeccCCCeEEEe-cCcCceE
Confidence 33 333455678999999999987 4556654
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=259.78 Aligned_cols=190 Identities=13% Similarity=0.027 Sum_probs=156.4
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh---hhcCCCCCCEEEEecCc-ccchhhHHHHHHHHhCCEEEEe
Q 008848 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 428 (551)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~l~~G~~lvl~ 428 (551)
.+++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|+ .|+.+....+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999988877433 45678899999999999 88888887778899999 5544
Q ss_pred cCCCChh-----------------------hHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCCh
Q 008848 429 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 485 (551)
Q Consensus 429 ~~~~~~~-----------------------~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~ 485 (551)
. .+++. .+++.|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 45666 77789999999999999999999987633223457899999999999999
Q ss_pred hhHHHHH-HhccCCceeccccccccccccccCCcCCCCCcCccCCC------CCCceEEEECC-CCCccCCCC
Q 008848 486 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~g~~v~IlD~-~g~~vp~Gv 550 (551)
++.+++. +.+++++++|.||+||+++.+.. .+ ..++|+| +++++++|+|+ +|++||+|.
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~-~~-----~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~ 312 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRS-LL-----ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGE 312 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEE-CC-----BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceec-cc-----cccCCCcccccCCCCCeEEEEECCCCCcCCCCCC
Confidence 9999999 88877899999999998765322 11 1158999 99999999998 899999996
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=254.79 Aligned_cols=194 Identities=14% Similarity=0.051 Sum_probs=155.1
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh---hhcCCCCCCEEEEecCcc-cchhhHHHHHHHHhCCEEEE
Q 008848 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLAL 427 (551)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~~~~~l~~G~~lvl 427 (551)
..+++++++|+|||||||.||||+++|+++.+...... ..++++++|++++..|++ |..+...++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34568999999999999999999999999876554332 357889999999999985 55566667889999999988
Q ss_pred ecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCC--CCCCccEEEeecCCCChhhHHHHHHhccCCceecccc
Q 008848 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (551)
Q Consensus 428 ~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (551)
.+ ..++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.++ ++++|.||
T Consensus 168 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG 245 (443)
T 2y4o_A 168 MS-GGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG-IDALDIYG 245 (443)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEeccC
Confidence 76 35889999999999999999999999999875322222 2579999999999999999999988774 89999999
Q ss_pred ccccccc-cccCCcCCCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
+||+++. +...... .....+.|.+++.++|+|+ +|+++|+|.
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~ 289 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGS 289 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTC
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCC
Confidence 9997432 2222211 1112455778999999994 699999985
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-28 Score=251.83 Aligned_cols=194 Identities=19% Similarity=0.122 Sum_probs=158.1
Q ss_pred CCCC-CCeEEEEecCCCCCCCceEEecchhhHHHHHHh---hhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEE
Q 008848 352 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (551)
Q Consensus 352 ~~~~-~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv 426 (551)
..++ +++++|+|||||||.||||+++|+++.+..... ...++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 889999999999999999999999997765544 334688999999999998765554 56788899999999
Q ss_pred EecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCC--CCCCccEEEeecCCCChhhHHHHHHhccCCceeccc
Q 008848 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (551)
Q Consensus 427 l~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (551)
+.+ ..++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.++ ++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEecC
Confidence 876 45889999999999999999999999999876433333 3789999999999999999999988874 8999999
Q ss_pred cccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
|+||+++.++.... + ....+|.|.++++++|+| ++|+++|+|.
T Consensus 239 G~TE~~~~~~~~~~--~-~~~g~~~~~~~~~v~i~d~~~g~~~~~g~ 282 (436)
T 3qov_A 239 GMTEMNGPGVAFEC--Q-EQNGMHFWEDCYLVEIIDPETGEPVPEGE 282 (436)
T ss_dssp EEGGGTEEEEEEEC--T-TCSSEEECTTTEEEEEECTTTCSBCSTTC
T ss_pred cchhhcCCeeEEec--C-CCCeeEEccCceEEEEEECCCCCCCCCCC
Confidence 99999543222211 1 112367788899999999 7899999986
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=244.33 Aligned_cols=194 Identities=16% Similarity=0.074 Sum_probs=155.5
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh---hhcCCCCCCEEEEecCc-ccchhhHHHHHHHHhCCEEEE
Q 008848 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 427 (551)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~l~~G~~lvl 427 (551)
..+++++++|+|||||||.||||+++|+++.+...... ..++++++|++++..|+ .|..+...++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34568999999999999999999999999876654332 35788999999999998 466666677889999999987
Q ss_pred ecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCC--CCCccEEEeecCCCChhhHHHHHHhccCCceecccc
Q 008848 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (551)
Q Consensus 428 ~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~--l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (551)
.+ ..++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.++ ++++|.||
T Consensus 166 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG 243 (437)
T 2y27_A 166 FG-GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVDIYG 243 (437)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEecCC
Confidence 66 358899999999999999999999999998753222222 579999999999999999999988774 89999999
Q ss_pred ccccccc-cccCCcCCCCCcCccCCCCCCceEEEECC-CCCccCCCC
Q 008848 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYVRTF 550 (551)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~g~~v~IlD~-~g~~vp~Gv 550 (551)
+||+++. +...... ....+|.|.+++.++|+|+ +|+++|+|.
T Consensus 244 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~ 287 (437)
T 2y27_A 244 LSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGE 287 (437)
T ss_dssp ETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTC
T ss_pred chhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCC
Confidence 9998432 2222211 1112566788999999995 599999985
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-10 Score=121.51 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=103.5
Q ss_pred HHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC----Ccc--
Q 008848 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLY-- 85 (551)
Q Consensus 13 ~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~----~~~-- 85 (551)
.+|++++.+.+.+|.++|+++++...++ +||++||++ |++.+++.|..+++|+ ||++|++++..... ...
T Consensus 374 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 450 (520)
T 2jgp_A 374 TLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTLA 450 (520)
T ss_dssp EEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEEE
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCceeE
Confidence 4577889999999999999999998887 999999999 9999999999899999 99999998754321 111
Q ss_pred ccCCcch--hccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccce
Q 008848 86 WFPSLDQ--SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV 146 (551)
Q Consensus 86 ~~~~~~~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 146 (551)
....... ..++||.+.+...++++.+.+ |+. ++|++.+++++.++|.++++++..+
T Consensus 451 ~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~ 509 (520)
T 2jgp_A 451 PFMTDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQN 509 (520)
T ss_dssp ECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeecCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1111122 577888888777788888888 999 9999999999999999999998633
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-08 Score=106.76 Aligned_cols=128 Identities=7% Similarity=-0.100 Sum_probs=90.6
Q ss_pred HHhhCCCchH--HHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhH---hcCCCCCchhhHHHHHHhhcccccCCCCCC---
Q 008848 13 LMKVGLKLEE--AEEFDKILKQVISCSKGL-DAREIWRELVARK---VLKPWHPHGLHQLVYYSVYNDWDASIKGPP--- 83 (551)
Q Consensus 13 ~~~~~~~~~~--~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~---~l~~~r~~~~~~l~~fq~~~~~~~~~~~~~--- 83 (551)
.+|+++..++ +.+|.++++++++...++ +| ++||++ |++ .++..|..+.+|+ ||++|++++......
T Consensus 299 ~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~~ 374 (493)
T 4hvm_A 299 RVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLTR 374 (493)
T ss_dssp EEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTTBTTGG--GCEEECC-----------
T ss_pred eeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCCCCCcc--eeEEEEEEecCCcccccc
Confidence 4567888888 899999999999998888 99 999999 999 8999999999999 999999986542211
Q ss_pred ---------ccccCCc----------------chhcccc---HHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHH
Q 008848 84 ---------LYWFPSL----------------DQSKLTN---LGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEA 134 (551)
Q Consensus 84 ---------~~~~~~~----------------~~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~ 134 (551)
....+.. ...+++| +.+.+...++++.+.+ |+. ++| +.+++++.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~ 448 (493)
T 4hvm_A 375 GERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLD 448 (493)
T ss_dssp ---------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHH
T ss_pred ccccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHH
Confidence 0000000 1123566 7777777788899998 999 899 999999999
Q ss_pred HHHHHHhhccceeecc
Q 008848 135 YWEIALKEISVVFREA 150 (551)
Q Consensus 135 ~~~~~l~~~~~~~~~~ 150 (551)
+|..+++++..+++.+
T Consensus 449 ~~~~~L~~~~~~p~~~ 464 (493)
T 4hvm_A 449 GLDAAMAQAVADPSAP 464 (493)
T ss_dssp HHHHHHHHHHHCTTSB
T ss_pred HHHHHHHHHHhCCCCc
Confidence 9999999987444433
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-08 Score=105.78 Aligned_cols=132 Identities=7% Similarity=-0.127 Sum_probs=98.5
Q ss_pred HHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC--Cccc--c
Q 008848 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--PLYW--F 87 (551)
Q Consensus 13 ~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~--~~~~--~ 87 (551)
.++++++.+.+.+|.++++++++...++ +||++||++ |++.++..+ +.+|+ |+++|++++..... .... .
T Consensus 278 ~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~--~~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
T 1l5a_A 278 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNA--EQSYF--MSPFINILPFESPHFADCQTELK 352 (436)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCT--TCCBC--CCSEEEEECCCCCCCTTCEEEEE
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhcccc--cCCCc--cceEEEeeccCccccCCCeeEEE
Confidence 4678899999999999999999998888 999999999 999996544 46788 99999998654321 1100 0
Q ss_pred CCcchhccccHHHHHH-HhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccce---eeccccccc
Q 008848 88 PSLDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV---FREAPKCIL 155 (551)
Q Consensus 88 ~~~~~~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~---~~~~~~~~l 155 (551)
.......+ ||.+.+. ..++++.+.+ |+. ++|++.+++++.++|..+++++... ++.+...+|
T Consensus 353 ~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL 419 (436)
T 1l5a_A 353 VLASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLL 419 (436)
T ss_dssp EEEECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHH
T ss_pred ecCCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHh
Confidence 01112223 6666665 3567788888 998 9999999999999999999998755 555444443
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=96.64 E-value=1.4e-05 Score=83.27 Aligned_cols=122 Identities=12% Similarity=0.120 Sum_probs=83.6
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHhHhcCCC-----CCchhhHHHHHHhhcccccCCCC----C
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPW-----HPHGLHQLVYYSVYNDWDASIKG----P 82 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~pf~~~l~~~l~~~-----r~~~~~~l~~fq~~~~~~~~~~~----~ 82 (551)
+.+|++++++.+.+|.++++++++...+..||++||+. + +.+... +..+.. ++++|+++..... .
T Consensus 308 n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~----p~~~f~~~~~~~~~~~~~ 381 (466)
T 2xhg_A 308 SQYPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQ----PEVTFNYLGQFDADMRTE 381 (466)
T ss_dssp EEEEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCC----CSEEEEEEEECCTTCSSS
T ss_pred eeccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCC----CeEEEeecCcccccccCC
Confidence 34678888888899999999999987666999999996 5 555432 222333 3466766532110 0
Q ss_pred Cccc--cCC-------------cchhccccHHHHHHHhCCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhcc
Q 008848 83 PLYW--FPS-------------LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEIS 144 (551)
Q Consensus 83 ~~~~--~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 144 (551)
.... .+. .....+++|.+.+...++++.+.+ |+. ++|++.+++++.++|.++|+++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~ 454 (466)
T 2xhg_A 382 LFTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAII 454 (466)
T ss_dssp SCEECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ceecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHH
Confidence 1100 000 011236677666655677888888 999 99999999999999999999875
|
| >1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=91.66 E-value=0.0038 Score=63.54 Aligned_cols=104 Identities=11% Similarity=-0.095 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhcCCC-cHHHHH-----HHHHHhHhcCCCCCchhhHHHHHHhhc-ccccCCCC---CCcccc--CCc
Q 008848 23 AEEFDKILKQVISCSKGL-DAREIW-----RELVARKVLKPWHPHGLHQLVYYSVYN-DWDASIKG---PPLYWF--PSL 90 (551)
Q Consensus 23 ~~~f~~~l~~~~~~~~~~-~hq~~p-----f~~~l~~~l~~~r~~~~~~l~~fq~~~-~~~~~~~~---~~~~~~--~~~ 90 (551)
+.+|.++++++++...++ +||++| |++ +++.+++. +|+ +++| ++...... ...... ...
T Consensus 297 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~-----~pl---~~~~~n~~~~~~~~~~~~~~~~~~~~~ 367 (422)
T 1q9j_A 297 NTDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG-----LPP---LVFCTDATSFPTMRTPPGLEIEDIKGQ 367 (422)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS-----SCC---CEEEECCCCCCSCCCCTTCEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC-----CCc---eEEEecCCcCCCCCCCCCceeEeeecc
Confidence 457999999999998887 999996 889 99988643 232 3333 33221111 111100 001
Q ss_pred ch-hccccHHHH-HHHhCCccccccCCCCccchHHHHHHhhhChHHHHHHHHhhcc
Q 008848 91 DQ-SKLTNLGNA-LEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEIS 144 (551)
Q Consensus 91 ~~-~~~~~l~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 144 (551)
.. ..++++.+. +...++++.+.+|+. + .+++++.++|.++++++.
T Consensus 368 ~~~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~ 414 (422)
T 1q9j_A 368 FYCSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVP 414 (422)
T ss_dssp ECCBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTT
T ss_pred cccCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhh
Confidence 11 335566555 444566666655766 3 789999999999999976
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=3.6 Score=41.50 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=77.2
Q ss_pred CCCCceEEEEecCCCCCCC--ceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCeEEe
Q 008848 188 KEDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVS 262 (551)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--~~e~vva~lA~~~~Ga~~vp 262 (551)
..++.+|.+....|. +|. ...+|.+.+...+..+++.+... ++++|++..+++- ....+..+++.+..|+..++
T Consensus 87 ~~~~~~~~i~~TSGT-TG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGT-TGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCT-TSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCC-CCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 345677765544432 233 34689999998888888888778 9999999999985 34455667889999999987
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEeecce
Q 008848 263 IADSFAAREIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~vl~~~~~ 290 (551)
++. ..++++...+++.++.+++..+.+
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 765 478899999999999999987654
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=88.61 E-value=4 Score=41.24 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=76.6
Q ss_pred CCCceEEEEecCCCCCCCc--eEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCeEEec
Q 008848 189 EDNTVAIVWREDRCDESAV--NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--~~e~vva~lA~~~~Ga~~vpl 263 (551)
.++.+|.+....| .+|.. ..+|.+.+...+..+++.+... ++++|++..+++- ....+..+++.+..|+..+++
T Consensus 90 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4567775544433 23333 3689999998888888888778 9999999999986 345556678899999998887
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecce
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~ 290 (551)
++ ..++++...+++.++.+++..+.+
T Consensus 169 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 169 SG-GQTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEECHHH
Confidence 65 478889999999999999987654
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=3.3 Score=41.78 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=77.6
Q ss_pred CceEEEEecCCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCeEEecCCC
Q 008848 191 NTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADS 266 (551)
Q Consensus 191 d~~Al~~~~~~~~~~-~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--~~e~vva~lA~~~~Ga~~vpl~~~ 266 (551)
+.+|.+....|..+. ....+|.+.+...+..+++.+... +.++|++..+++- ....+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 778876655443222 234689999999998898888888 9999999999874 45566677899999999888765
Q ss_pred CCHHHHHHHHHhcCceEEEeecce
Q 008848 267 FAAREIATRLRVSKAKGIFTQDFI 290 (551)
Q Consensus 267 ~~~~~l~~~l~~~~~~~vl~~~~~ 290 (551)
..++++...+++.++.+++..+.+
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~ 188 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSY 188 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHHH
Confidence 467888999999999999887753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 551 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 3e-53 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-43 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 2e-22 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-20 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-18 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 4e-16 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-12 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 189 bits (481), Expect = 3e-53
Identities = 97/400 (24%), Positives = 168/400 (42%), Gaps = 22/400 (5%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGGTWLPGSVLNIAECCLLPSN 184
K ++ P+ +W K + + + + + + W LN+A CL
Sbjct: 25 KQSINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCL--DR 80
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
H ++ + AI+W D +S ++Y+EL V AN L + KGD +AI MPM
Sbjct: 81 HLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMV 138
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
A + LA G V I F+ +A + S ++ + T D +R GR PL V
Sbjct: 139 PEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNV 198
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSW---KDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
A LK + ++ + + + D+ W +D + P + +
Sbjct: 199 DDA--LKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLF 256
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFSS 418
IL++SG+TG+PK + T + A + ++ D GD+Y ++GWV G +L+
Sbjct: 257 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 316
Query: 419 FLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKI 473
GAT +++G P + + V V +L T P+ ++A +EG D + +
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376
Query: 474 RSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSS 511
R S GE N + W K ++++ TE
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 416
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 161 bits (408), Expect = 3e-43
Identities = 79/382 (20%), Positives = 146/382 (38%), Gaps = 18/382 (4%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH----GGTWLPGSVLNIAECCLL 181
K ++E P ++ + + + + + K+ W LN C+
Sbjct: 8 KESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV- 65
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAID 239
H K N AI++ D + +TYKEL E+V VA L KGD +A+
Sbjct: 66 -DRHALKTPNKKAIIFEGDEPGQGYS--ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A+I LAI G + + F++ + R+ +K + T D RGG+
Sbjct: 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 182
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
V A V + + +D + + YY + +
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFS 417
+L++SG+TG PK + + + + D DV+ ++GW+ G +++
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 418 SFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTK 472
L G +++G+P ++ ++ + + VT P+ ++ + +E
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 473 IRSFASTGETSNVDDDLWLSSK 494
+R S GE + W S K
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEK 384
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 98.8 bits (245), Expect = 2e-22
Identities = 65/374 (17%), Positives = 109/374 (29%), Gaps = 38/374 (10%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ TY E+ ++ + L + GD +A
Sbjct: 20 AAALFGRKEVVSRLHTGEVHR----TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 75
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
R + Y A+ G V+ + + +EIA L ++ K + +L
Sbjct: 76 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------------ 123
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
++AI + + E+ PV P A + +
Sbjct: 124 ---PLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD----PVRVPERAACGMAY 176
Query: 364 SSGTTGEPKA--IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
++GTTG PK L A L DV + V + +++ L
Sbjct: 177 TTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLV 236
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GA L S + GVT VP++ A + G +R G
Sbjct: 237 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGS 296
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ---GSLLQPQAFGAFSTATMTAG--- 535
+ + + + G TE S +Q S L+ + T G
Sbjct: 297 AAPRSLIARF--ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 354
Query: 536 ----LVILDECGVP 545
L + DE G P
Sbjct: 355 PLVRLRVADEEGRP 368
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 93.0 bits (230), Expect = 1e-20
Identities = 54/349 (15%), Positives = 113/349 (32%), Gaps = 19/349 (5%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
P E L +R I + + + + +TY E E + +A A+
Sbjct: 12 YPLEDGTAGE--QLHKAMKRYALVPGTIAFTDAHIEVN----ITYAEYFEMSVRLAEAMK 65
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ I + +++ + L + G V D + RE+ + +S+ +F
Sbjct: 66 RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125
Query: 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346
L+ ++ K I++ + + G ++ +Y P
Sbjct: 126 SKKGLQKILNVQKKLPIIQ----KIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP- 180
Query: 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWP 403
++ + I+ SSG+TG PK + + +
Sbjct: 181 ---ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 237
Query: 404 TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN 463
G + G + L E F + +QD + VP+L + +
Sbjct: 238 VPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL-FLRSLQDYKIQSALLVPTLFSFFAKST 296
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA 512
++ D + + AS G + + ++ + I + G TE +SA
Sbjct: 297 LIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 345
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 86.5 bits (213), Expect = 1e-18
Identities = 53/329 (16%), Positives = 107/329 (32%), Gaps = 47/329 (14%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
N VAIV ++ +TY EL + +A K + I M ++ I
Sbjct: 38 NNVAIVCENEQ--------LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
LA++ AG V I + I L S+A+ + TQ ++
Sbjct: 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH----------------- 132
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
++ I + + + E+D R V + + ++++SGTTG
Sbjct: 133 ---LIHNIQFNGQVEIFEED----------TIKIREGTNLHVPSKSTDLAYVIYTSGTTG 179
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
PK +++ D ++ + +F + L GA+L +
Sbjct: 180 NPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIIL 239
Query: 430 GSPLE--RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
+ F +++ +TV+ L+ I++ + G ++
Sbjct: 240 KDTINDFVKFEQYINQKEITVITLP------PTYVVHLDPERILSIQTLITAGSATSPSL 293
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQG 516
K Y T ++ ++
Sbjct: 294 VNKWKEKVTYINAYGPTETTICATTWVAT 322
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 78.9 bits (193), Expect = 4e-16
Identities = 51/358 (14%), Positives = 97/358 (27%), Gaps = 28/358 (7%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ +AI +Y+EL + +A + + D + + +P +
Sbjct: 40 DRIAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ G + V S + EI ++A D A
Sbjct: 92 IFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG--------FDYRSLARQ 143
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
LP + N + E+ L +D + P + + S G+TG
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAF--------LQLSGGSTG 195
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALY 428
K IP T I L VY + L +
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255
Query: 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDD 488
SP ++ VT+ VP L W + D + ++ G + +
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAGLVILDECGVP 545
+ + + + + G E Y + + + + D+
Sbjct: 316 RRVKAV-FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRD 372
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 67.7 bits (164), Expect = 1e-12
Identities = 56/304 (18%), Positives = 87/304 (28%), Gaps = 30/304 (9%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + A + G+ I
Sbjct: 90 SAELAELIKRGEMTAAVIAV------------------GRQVADAIFQSGSGARIIFLGD 131
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI--PWTQLSSIRCTA 386
+ + S P I ++SGTTG PKA P S
Sbjct: 132 LVRDGEPYSYGPPIEDPQR------EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446
+ +V L V+G + + L + + VQ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 447 TVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
T L P+ + A G L +R G T D L + +
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNIY 304
Query: 505 GGTE 508
G TE
Sbjct: 305 GTTE 308
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 98.18 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 88.44 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 87.33 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 81.23 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.5e-60 Score=519.70 Aligned_cols=423 Identities=25% Similarity=0.365 Sum_probs=342.1
Q ss_pred CCccchHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCC-CCCCCCcCCCCcchhhhhhccccccCCCCCCceE
Q 008848 116 DPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVA 194 (551)
Q Consensus 116 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~A 194 (551)
..+++|+.++++++++++.||..+++. ++|.+++.++++.... .....+||+++.+|+++++++++. +.+||++|
T Consensus 15 ~~~~~y~~l~~~s~~~~~~fW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~N~~~n~ldrh~--~~~~d~~A 90 (643)
T d1pg4a_ 15 INPEQYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTA 90 (643)
T ss_dssp SCHHHHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEE
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHhh--eeEECCCcccccCccCCCCCCCeeCCCChhhHHHHHHHHHH--HhCCCCEE
Confidence 345788999999999999999999987 6688888888765422 223457999999999999999875 67899999
Q ss_pred EEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHH
Q 008848 195 IVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIA 273 (551)
Q Consensus 195 l~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~ 273 (551)
+++.+. +.+..+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++||+++|++|.++++++.
T Consensus 91 li~~~~--~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~ 168 (643)
T d1pg4a_ 91 IIWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVA 168 (643)
T ss_dssp EEEECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHH
T ss_pred EEEEec--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHH
Confidence 998754 346678999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEeecceeccCccccchhHHhhcC-----C--CceEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCC
Q 008848 274 TRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----P--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (551)
Q Consensus 274 ~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (551)
+++++++++++|+++...+.++.......+.... . ..++++...+...... ......+.+.......
T Consensus 169 ~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 242 (643)
T d1pg4a_ 169 GCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLIEKASP----- 242 (643)
T ss_dssp HHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCC-BTTEEEHHHHHTTSCS-----
T ss_pred HHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccc-cccchhhhhhhcccCc-----
Confidence 9999999999999998877766665555443321 1 1233333322211110 1112223333332221
Q ss_pred CCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHH-HHHhhhhcCCCCCCEEEEecCcccchhhH-HHHHHHHhCCE
Q 008848 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGAT 424 (551)
Q Consensus 347 ~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~~ 424 (551)
...+...+++|+++|+|||||||+||||+++|++++.. .......++++++|++++.+|++|+++.. .++++|++|++
T Consensus 243 ~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t 322 (643)
T d1pg4a_ 243 EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAT 322 (643)
T ss_dssp CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCE
T ss_pred ccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCE
Confidence 23334567899999999999999999999999997654 44445567899999999999999999874 57889999999
Q ss_pred EEEecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhcc--C
Q 008848 425 LALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--Y 497 (551)
Q Consensus 425 lvl~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~--~ 497 (551)
++++++. +++..++++|++++||++.++|++++.|++... ....++++||.+++|||++++++++++.+.++ +
T Consensus 323 ~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~ 402 (643)
T d1pg4a_ 323 TLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEK 402 (643)
T ss_dssp EEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTC
T ss_pred EEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCC
Confidence 9998743 478899999999999999999999999987643 34667999999999999999999999998875 4
Q ss_pred CceeccccccccccccccCCc-CCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 498 NAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
++++|.||+||+++.++...+ ..+.+.+++|+|++|++++|+|++|+++|+|.
T Consensus 403 ~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~ 456 (643)
T d1pg4a_ 403 CPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT 456 (643)
T ss_dssp SCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE
T ss_pred ceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCc
Confidence 779999999999876554333 23456789999999999999999999999874
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-56 Score=487.95 Aligned_cols=416 Identities=23% Similarity=0.340 Sum_probs=329.1
Q ss_pred chHHHHHHhhhChHHHHHHHHhhccceeeccccccccCCCC----CCCCCCcCCCCcchhhhhhccccccCCCCCCceEE
Q 008848 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK----SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAI 195 (551)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al 195 (551)
+|+.+++++++++++||.++++.. +.|.+++++++..... ......||+++.+|++++|+++++ +++||++|+
T Consensus 2 ~y~~l~~~Si~~~~~Fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a--~~~pd~~Al 78 (640)
T d1ry2a_ 2 DYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKTPNKKAI 78 (640)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTCTTSEEE
T ss_pred CHHHHHHHHHhCHHHHHHHHHHhh-eeEecCCeEeeccCCccCCCCCCCCcCCCCCchhHHHHHHHHHH--hhCCCCEEE
Confidence 689999999999999999998886 7899999988754321 123458999999999999999865 789999999
Q ss_pred EEecCCCCCCCceEecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHH
Q 008848 196 VWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIA 273 (551)
Q Consensus 196 ~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~~~~~~l~ 273 (551)
++.+. +.+..+++||+||+++++++|++|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.++++++.
T Consensus 79 i~~~~--~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~ 156 (640)
T d1ry2a_ 79 IFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLR 156 (640)
T ss_dssp EEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHH
T ss_pred EEEec--CCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHH
Confidence 98653 3567789999999999999999997 68 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceEEEeecceeccCccccchhHHhhcC---CC-c-eEEecCCCCCCCCCCCCCCcchHHhhccCCCCCCCCCC
Q 008848 274 TRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL-K-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 348 (551)
Q Consensus 274 ~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (551)
++++++++++++++....+..+.......+.+.. .. . ...+.................+........ ...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 231 (640)
T d1ry2a_ 157 DRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYK-----TYY 231 (640)
T ss_dssp HHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSC-----SCC
T ss_pred HHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccccccccccc-----ccc
Confidence 9999999999999988776666555444443322 11 1 222221111111011111111222222111 122
Q ss_pred CCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHh-hhhcCCCCCCEEEEecCcccchhh-HHHHHHHHhCCEEE
Q 008848 349 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG-WAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (551)
Q Consensus 349 ~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv 426 (551)
...+..++|+++|+|||||||.||||+++|++++...... ...+.++++|++++.+|++|+++. +.++++|+.|++++
T Consensus 232 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 311 (640)
T d1ry2a_ 232 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATL 311 (640)
T ss_dssp CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEE
T ss_pred ccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEE
Confidence 3344567899999999999999999999999977655433 346789999999999999999986 56888999999999
Q ss_pred EecCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCc--cCCCCCCCccEEEeecCCCChhhHHHHHHhccC--Cc
Q 008848 427 LYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NA 499 (551)
Q Consensus 427 l~~~~---~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~--~~ 499 (551)
++++. +++..+++.|++++||++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.++. .+
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~ 391 (640)
T d1ry2a_ 312 VFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 391 (640)
T ss_dssp EECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSC
T ss_pred EecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcce
Confidence 98753 367899999999999999999999999987543 345679999999999999999999999998873 46
Q ss_pred eeccccccccccccccCCc--CCCCCcCccCCCCCCceEEEECCCCCc
Q 008848 500 IIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVP 545 (551)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~g~~v~IlD~~g~~ 545 (551)
+++.||+||++........ ..+.+.+++|+|++|++++|+|+++..
T Consensus 392 i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~ 439 (640)
T d1ry2a_ 392 IVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGE 439 (640)
T ss_dssp EEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTT
T ss_pred EEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCc
Confidence 9999999999865443322 245577899999999999999976543
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.3e-45 Score=394.06 Aligned_cols=356 Identities=18% Similarity=0.152 Sum_probs=278.4
Q ss_pred CcCCCCcchhhhhhccccccCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 008848 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (551)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~ 244 (551)
.|......|..+ +++++ ++++||++|+++.+. ++++++||+||+++++++|++|.++ +++||+|+|+++|++
T Consensus 4 ~~~~~~~~~l~~-~l~~~--a~~~pd~~av~~~~~----g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~ 76 (534)
T d1v25a_ 4 STMMDEELNLWD-FLERA--AALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF 76 (534)
T ss_dssp CCBCCCCCCTHH-HHHHH--HHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred CccCCCCCCHHH-HHHHH--HHHcCCCeEEEEecC----CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCH
Confidence 344444445443 44443 489999999998765 4667899999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCC
Q 008848 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324 (551)
Q Consensus 245 e~vva~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~ 324 (551)
++++++|||+++|++++|++|.++.+++.++|+++++++++++.... .....+..........+.......
T Consensus 77 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--- 147 (534)
T d1v25a_ 77 RHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKAP--- 147 (534)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCCC---
T ss_pred HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhh------hhHHHHhhcccccceeEEeecccc---
Confidence 99999999999999999999999999999999999999999987542 223333333333222222211110
Q ss_pred CCCCCcchHHhhccCCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhh--hhcCCCCCCEEEE
Q 008848 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--AHIDLKVGDVYCW 402 (551)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~ 402 (551)
......... .. .........++++++|+|||||||.||||+++|+++++...... ..+....++++++
T Consensus 148 --~~~~~~~~~-~~-------~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~ 217 (534)
T d1v25a_ 148 --EGYLAYEEA-LG-------EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLP 217 (534)
T ss_dssp --TTCEEHHHH-CC-------SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEE
T ss_pred --ccccccccc-cc-------ccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhccccccccccccc
Confidence 011111111 11 11122345678999999999999999999999999986654333 3456788999999
Q ss_pred ecCcccchhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCC
Q 008848 403 PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482 (551)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~ 482 (551)
.+|+.|..+....+.+++.|+++++....+++..+...+.+++||++.++|+++..+++.......++++||.+++||++
T Consensus 218 ~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~ 297 (534)
T d1v25a_ 218 VVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSA 297 (534)
T ss_dssp CSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSC
T ss_pred ccchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCC
Confidence 99999999988888899999999998777889999999999999999999999999987655566789999999999999
Q ss_pred CChhhHHHHHHhccCCceeccccccccccccccCCcCC----------CCCcCccCCCCCCceEEEECCCCCccCCC
Q 008848 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYVRT 549 (551)
Q Consensus 483 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~g~~v~IlD~~g~~vp~G 549 (551)
++++..+++++. +.++++.||+||++..++...... ....+++|+|++|++++|+|++|+++|.|
T Consensus 298 ~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~ 372 (534)
T d1v25a_ 298 APRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD 372 (534)
T ss_dssp CCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred CCHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCC
Confidence 999999888754 468999999999987655432211 11347899999999999999999999874
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.6e-44 Score=385.80 Aligned_cols=345 Identities=16% Similarity=0.141 Sum_probs=266.9
Q ss_pred CCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCC
Q 008848 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (551)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl~~~ 266 (551)
..|+++|+.+.+. .+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|+++.
T Consensus 32 ~~P~~~a~~d~~~------~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~ 105 (541)
T d1lcia_ 32 LVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 105 (541)
T ss_dssp TSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTT
T ss_pred CCCCeEEEEeCCC------CeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCC
Confidence 4599999987543 24899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCC--CC
Q 008848 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH--PR 344 (551)
Q Consensus 267 ~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 344 (551)
++.+++.++|++++++++|+++... +.+..+....+....++....... ......+.+........ ..
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 175 (541)
T d1lcia_ 106 YNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD----YQGFQSMYTFVTSHLPPGFNE 175 (541)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC----BTTBEEHHHHHHHHSCTTCCT
T ss_pred CCHHHHHHHHHhccceEEeeecccc------ccchhccccccccceeeeecCCcc----ccccchhhhhhhhhccccccc
Confidence 9999999999999999999998532 333344444444333322211110 11222333332221110 01
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhh---hcCCCCCCEEEEecCcccchhhHHHHHHHHh
Q 008848 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (551)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (551)
....+.....++++|||+|||||||.||||+++|++++....+... ...+.+++++++..|+.|..+....+..+..
T Consensus 176 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 255 (541)
T d1lcia_ 176 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 255 (541)
T ss_dssp TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred cccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccccc
Confidence 1112223445688999999999999999999999998876665443 3457889999999999999998888888888
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 422 G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
|+..+... ..+.......+.++++|.+.++|+++..+.........+++++|.+++||+++++....++.+.++...++
T Consensus 256 ~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~ 334 (541)
T d1lcia_ 256 GFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIR 334 (541)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCB
T ss_pred cccccccc-ccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceee
Confidence 98887755 56778889999999999999999999999988777777889999999999999999999999888766799
Q ss_pred ccccccccccccccCCcCCCCCcCccCCCCCCceEEEEC-CCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD-~~g~~vp~Gv 550 (551)
+.||+||+++.++.. .......+++|+|+||++++|+| ++|+++|+|.
T Consensus 335 ~~YG~TE~~~~~~~~-~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~ 383 (541)
T d1lcia_ 335 QGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ 383 (541)
T ss_dssp CEECCGGGSSCSEEC-CCC---CCCCBEECTTCEEEEECTTTCCBCCTTC
T ss_pred ecCCccccCceEEec-CcccCCCCccccccCCCEEEEEECCCCcCCCCCC
Confidence 999999998765543 33456678999999999999999 5699999885
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.2e-42 Score=370.63 Aligned_cols=339 Identities=16% Similarity=0.135 Sum_probs=264.8
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+|+++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 34 ~a~~~pd~~Al~~~~~--------~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl 105 (536)
T d1mdba_ 34 RAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105 (536)
T ss_dssp HHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHCCCCeEEEECCE--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEec
Confidence 4578999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCC-ceEEecCCCCCCCCCCCCCCcchHHhhccCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (551)
+|.++.+++.++|++++++++++++........ ............ ...+..... .....++++...
T Consensus 106 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---- 172 (536)
T d1mdba_ 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-SLARQVQSKLPTLKNIIVAGEA--------EEFLPLEDLHTE---- 172 (536)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEESEETTEEHH-HHHHHHHHHCTTCCCEEEESCC--------TTSEEGGGCCCC----
T ss_pred CCCCCHHHHHHHHHhhccceEeccchhhhhhhh-hhhhhhhhccccccceeeeecc--------ccccchhhcccC----
Confidence 999999999999999999999998754211100 000111111111 111111100 111222222111
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHH-HHHHHH-
Q 008848 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFL- 420 (551)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~- 420 (551)
........++|+++|+|||||||.||||+++|+++...+......+++.++|++++..++.|..++.. ++..++
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~ 248 (536)
T d1mdba_ 173 ----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248 (536)
T ss_dssp ----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ----CcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccccc
Confidence 12233457899999999999999999999999999999988888899999999999999999988743 333444
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCce
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (551)
.|.+++. ...+++..++..+++++++.+..+|+.+..+..........+++++.+++||+++++....++...++ ...
T Consensus 249 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~-~~~ 326 (536)
T d1mdba_ 249 AGGRVVL-SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTL 326 (536)
T ss_dssp TTCEEEE-CSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-SEE
T ss_pred ccccccc-cCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccC-cee
Confidence 4555555 44678899999999999999999999999888776566677899999999999999999999888876 678
Q ss_pred eccccccccccccccCCcCCCCCcCccCCCCC-CceEEEECCCCCccCCCC
Q 008848 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATM-TAGLVILDECGVPYVRTF 550 (551)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~-g~~v~IlD~~g~~vp~Gv 550 (551)
...||.+|.+..+...........+++|+|++ +..+.|.+++|+++++|.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~ 377 (536)
T d1mdba_ 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE 377 (536)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTC
T ss_pred eeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeecccc
Confidence 88888888776544444334445678999976 667888889999999875
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.4e-41 Score=360.79 Aligned_cols=319 Identities=18% Similarity=0.141 Sum_probs=255.7
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+|+++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 32 ~a~~~Pd~~Al~~~~~--------~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l 103 (514)
T d1amua_ 32 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 103 (514)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEe
Confidence 4589999999999876 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++.+++.+++++++++++|++.... ..+............... ....
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~~-----------------~~~~---- 153 (514)
T d1amua_ 104 DIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEED-----------------TIKI---- 153 (514)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCCS-----------------TTTT----
T ss_pred CCCCCHHHHHHHHhccCCcEEEEehhhh---------hhhhhhcccccccccccc-----------------cccc----
Confidence 9999999999999999999999987532 222222211111111100 0000
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCC
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (551)
........+..++++++|+|||||||.||||+++|+++..........+....++++++..++.|..+++.++.+++.|+
T Consensus 154 ~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~ 233 (514)
T d1amua_ 154 REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGA 233 (514)
T ss_dssp SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred cccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 01111223456789999999999999999999999999999988888899999999999999999999998999999999
Q ss_pred EEEEecC--CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCCCChhhHHHHHHhccCCcee
Q 008848 424 TLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (551)
Q Consensus 424 ~lvl~~~--~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (551)
++++... ..+...+++.+..+.++.+..+|...... ...++++++.+++||+++++++..++.. +..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~ 304 (514)
T d1amua_ 234 SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE---KVTYI 304 (514)
T ss_dssp EEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEE
T ss_pred cccccccccccchhhhhhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc---ceeEE
Confidence 9998752 23556788999999999999999875432 3456889999999999999998877654 36899
Q ss_pred ccccccccccccccCCc--CCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 502 ESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 502 n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
+.||+||++.+++.... ......++.|+++++..+.+.|++++++|+|.
T Consensus 305 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~ 355 (514)
T d1amua_ 305 NAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE 355 (514)
T ss_dssp EEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred EeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCC
Confidence 99999999876543322 23344568899999999999999999999884
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=2.3e-38 Score=333.75 Aligned_cols=333 Identities=16% Similarity=0.056 Sum_probs=254.2
Q ss_pred cCCCCCCceEEEEecCCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 008848 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (551)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~vva~lA~~~~Ga~~vpl 263 (551)
+|+++||++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 11 ~a~~~pd~~al~~~~~~------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi 84 (503)
T d3cw9a1 11 AATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84 (503)
T ss_dssp HHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHhCCCCeEEEECCCC------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEe
Confidence 45899999999986542 5899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCceEEEeecceeccCccccchhHHhhcCCCceEEecCCCCCCCCCCCCCCcchHHhhccCCCCC
Q 008848 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (551)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (551)
+|.++++++++++++++++++|++.... .............++. +.++........
T Consensus 85 ~~~~~~~~i~~~l~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~i~-----------------~~~~~~~~~~~~ 140 (503)
T d3cw9a1 85 NPRLKSAELAELIKRGEMTAAVIAVGRQ-------VADAIFQSGSGARIIF-----------------LGDLVRDGEPYS 140 (503)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEESSCHH-------HHHHHHHTTCCCEEEE-----------------HHHHEETTEECC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEeecchH-------HHHHHhhhcccccccc-----------------chhhhhhhcccc
Confidence 9999999999999999999999886421 1112222222222221 122221111100
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHHHHhhhhc--CCCCCCEEEEecCcccchhhHH-HHHHHH
Q 008848 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI--DLKVGDVYCWPTNLGWVMGPVI-LFSSFL 420 (551)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~-~~~~l~ 420 (551)
...........++++++|+|||||||.||+|+++|+++...+......+ .....+++++.+|+.|..+... .+.+..
T Consensus 141 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (503)
T d3cw9a1 141 YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220 (503)
T ss_dssp CSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHH
T ss_pred cCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccc
Confidence 1112233455678999999999999999999999999988887766554 3456688999999988777643 556667
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC--ccCCCCCCCccEEEeecCCCChhhHHHHHHhccCC
Q 008848 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (551)
Q Consensus 421 ~G~~lvl~~~~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~~~--~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (551)
.++++++.+ ..++..+...+.+++++++..+|+.+..+.... ......+++||.+++|||+++++...++...++ .
T Consensus 221 ~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~-~ 298 (503)
T d3cw9a1 221 LDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-G 298 (503)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCC-S
T ss_pred ccccccccc-ccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccccccccccccc-c
Confidence 777777655 578899999999999999999999988776532 223455789999999999999999988887765 6
Q ss_pred ceeccccccccccccccCCcCCCCCcCccCCCCCCceEEEECCCCCccCCCC
Q 008848 499 AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYVRTF 550 (551)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~g~~v~IlD~~g~~vp~Gv 550 (551)
.+.+.||.||++..+..... ......+.+.+.+...+.+.+..++.++.|-
T Consensus 299 ~~~~~yg~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 349 (503)
T d3cw9a1 299 EKVNIYGTTEAMNSLYMRQP-KTGTEMAPGFFSEVRIVRIGGGVDEIVANGE 349 (503)
T ss_dssp EEEEEEEETTTEEEEEEESC-SSSSEEBCCTTCCEEEECTTSCTTCBCCTTC
T ss_pred cccccccccccceeeeeccc-cccccccccccccceeeeeecccCcccCCCc
Confidence 89999999999865443332 2233345556666677777778888888774
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=98.18 E-value=4.5e-09 Score=97.99 Aligned_cols=131 Identities=7% Similarity=-0.086 Sum_probs=93.8
Q ss_pred HHHhhCCCchHHHHHHHHHHHHhhhcCCC-cHHHHHHHHHHhHhcCCCCCchhhHHHHHHhhcccccCCCCC--Cc--cc
Q 008848 12 DLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--PL--YW 86 (551)
Q Consensus 12 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~l~~~l~~~r~~~~~~l~~fq~~~~~~~~~~~~--~~--~~ 86 (551)
+++|+++.++++.+|.++++++++...++ +||++||++ |++.++. ....+++ |+++|+++...... .. .+
T Consensus 103 n~lP~r~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~~~~-i~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 177 (250)
T d1l5aa2 103 NSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGL--NAEQSYF--MSPFINILPFESPHFADCQTEL 177 (250)
T ss_dssp EEEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTC--CTTCCBC--CCSEEEEECCCCCCCTTCEEEE
T ss_pred eeeeEEEEeCCCCCHHHHHHHHHHHHHHhhhhcCCCHHH-HHHHhcC--CCCCCCc--cceEEEeeccCccCCCCCceEE
Confidence 34577888889999999999999998888 999999999 9998854 4455667 88888775433211 00 11
Q ss_pred cCCcchhccccHHHHHHHh-CCcccccc-CCCCccchHHHHHHhhhChHHHHHHHHhhccceeeccccc
Q 008848 87 FPSLDQSKLTNLGNALEIH-GPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKC 153 (551)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~ 153 (551)
.. .......|+.+.+... ++++...+ |+. ++|++.+++.+.++|.++++++..+++.+...
T Consensus 178 ~~-~~~~~~~dl~l~v~~~~~~~l~l~~~y~~-----~~~~~~~i~~l~~~~~~ll~~l~~~p~~~~~~ 240 (250)
T d1l5aa2 178 KV-LASGSAEGINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQD 240 (250)
T ss_dssp EE-EEECCCCSEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred Ee-eeccceeeEEEEEEEcCCceEEEEEEEeh-----hhCCHHHHHHHHHHHHHHHHHHHhCcCcccch
Confidence 11 1122234566555443 45577888 998 99999999999999999999988555554433
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=88.44 E-value=0.72 Score=45.41 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=80.3
Q ss_pred EEEecCCCCCCCceEEecchhhHHHHH---HhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecCCCChhh
Q 008848 360 NILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS 436 (551)
Q Consensus 360 ~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~~~~~~~ 436 (551)
.+.++.+.+| ..+|++.+...+. ......++++||++..+++-+.+.- ..+++++..|+..+.++.....++
T Consensus 36 ~~a~~d~~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~-v~~lA~~~~G~i~vpl~~~~~~~~ 110 (541)
T d1lcia_ 36 TIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF-MPVLGALFIGVAVAPANDIYNERE 110 (541)
T ss_dssp CEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTH-HHHHHHHHHTCEEEECCTTCCHHH
T ss_pred eEEEEeCCCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHH-HHHHHHHHhCeEEEecCCCCCHHH
Confidence 3444555554 4578887765443 3334568999999988776665433 446788999999998876677889
Q ss_pred HHHHHHHcCCcEEEecHHHHHHHHhcCccCCCCCCCccEEEeecCC
Q 008848 437 FGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482 (551)
Q Consensus 437 ~~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~i~~gGe~ 482 (551)
+...++..++..+......+..+.+.. ..++.++.+++.+..
T Consensus 111 l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 152 (541)
T d1lcia_ 111 LLNSMNISQPTVVFVSKKGLQKILNVQ----KKLPIIQKIIIMDSK 152 (541)
T ss_dssp HHHHHHHHCCSEEEECGGGHHHHHHHH----HHCTTCCEEEETTCS
T ss_pred HHHHHHhccceEEeeeccccccchhcc----ccccccceeeeecCC
Confidence 999999999999999988877665432 124566666665443
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=87.33 E-value=4 Score=39.71 Aligned_cols=102 Identities=16% Similarity=0.005 Sum_probs=75.6
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHH---HHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.||.+|++...+|- .-.+|.+.+...+ .......+++++|++....+-+... +..+++++..|+..+.++.
T Consensus 24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 97 (534)
T d1v25a_ 24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 97 (534)
T ss_dssp STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 56788877665542 2347887765544 3344557899999998887776553 3447789999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHHHh
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 461 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps~l~~l~~ 461 (551)
....+++...++..++..+.........+..
T Consensus 98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~ 128 (534)
T d1v25a_ 98 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128 (534)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred CCCHHHHHHHHHhhccccccccchhhhhHHH
Confidence 6778899999999999999988877666543
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=81.23 E-value=3.1 Score=39.73 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=67.4
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHH---HHhhhhcCCCCCCEEEEecCcccchhhHHHHHHHHhCCEEEEecC
Q 008848 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (551)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvl~~~ 430 (551)
.||.+|++.-.+| .-+|.+.+.... .......++++||++....+-+.+.- ..+++++..|+..+.++.
T Consensus 15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~v~vpi~~ 86 (503)
T d3cw9a1 15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (503)
T ss_dssp STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHH-HHHHHHHHhCcEEEEeCC
Confidence 4677787654444 347887765433 33344578899999988777655433 347788999999999987
Q ss_pred CCChhhHHHHHHHcCCcEEEecHH
Q 008848 431 SPLERSFGKFVQDAGVTVLGTVPS 454 (551)
Q Consensus 431 ~~~~~~~~~~i~~~~vt~l~~~Ps 454 (551)
...++++..++++.++..+.....
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 87 RLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp TSCHHHHHHHHHHTTCSEEEESSC
T ss_pred CCCHHHHHHHHHhcCCcEEEeecc
Confidence 777888999999999998876543
|