Citrus Sinensis ID: 008852

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-
MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAASKDDEEKPMEEVAAGQEKKEKKKKKSKKADDERTNGSVEAENEESVKKEKKKRKKQVAEAGGENVEAGEKKKKKRKHSEVNEEESEVPSKKEKKKKKKNDD
cEEEEEcccEEHEEEEccccccccHHHHHHHHccHHHHHccEEEcEEcccccHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEEEccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccEEEEEcHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccccccccHHHHHHccccc
cEEEEEccccEEEEEEccHHHHHHHHHHHHHHccHHHHHHEEEEEcccccccHHHHHHHHHHHHcccccHHHHHHHHHHccccEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHccHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHccHccHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccHccccccHHccHcccccccccccccHHHHHHHHHHcccccccccHcccccccccHcccccccccccccHHcccccccccccccHHHHHHHccccccccccccccccccccccc
mlvlfetpagFALFKVldegklskVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLleskpskdLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISglagqdlqpmslglshslsryklkfsaDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMgdrsnaakldfseiLPEEVEAQLKEAAMISMgtevsdldlLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHggsllnlakqpgstvQILGAEKALFRALKtkhatpkygliYHASlvgqaapkhkgkisrSLASKTALAIRYDalgdgqdnsmgleNRAKLEARLRNLEGKelgraagsakgkpkievydkdrkkgpgaMITAAKTYNPAADSILGLMEnaaskddeekpmEEVAAGQEKKEKKKKkskkaddertngsveaeneeSVKKEKKKRKKQVAEAggenveagekkkkkrkhsevneeesevpskkekkkkkkndd
mlvlfetpagfalFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATClleskpskdLRKFLRTHCDGEtlavadsklgnaiKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDAlgdgqdnsmglENRAKLEARLRNLEgkelgraagsakgkpkievydkdrkkgpGAMITAAKTYNPAADSILGLMENaaskddeeKPMEevaagqekkekkkkkskkaddertngsveaeneesvkkekkkrkkqvaeaggenveagekkkkkrkhsevneeesevpskkekkkkkkndd
MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAASKDDEEKPMEEVAAGQekkekkkkkskkADDERTNGSveaeneesvkkekkkrkkqvaeaggenveagekkkkkrkhsevneeesevpskkekkkkkknDD
**VLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLE*****DLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQA***************TALAIRYDA***********************************************************************************************************************************************************************************
MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAA***************************VSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQ*L*****************KYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRN************************************************************************************************************************************************************
MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVG*************LASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELG***********IEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAA*****************************************************************************************************
MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRA******K********************************************************************************************************************************************
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MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKDRKKGPGAMITAAKTYNPAADSILGLMENAASKDDEEKPMEEVAAGQEKKEKKKKKSKKADDERTNGSVEAENEESVKKEKKKRKKQVAEAGGENVEAGEKKKKKRKHSEVNEEESEVPSKKEKKKKKKNDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query551 2.2.26 [Sep-21-2011]
Q9MAB3533 Probable nucleolar protei yes no 0.805 0.833 0.831 0.0
O04658533 Probable nucleolar protei no no 0.803 0.831 0.832 0.0
Q9Y2X3529 Nucleolar protein 58 OS=H yes no 0.787 0.820 0.613 1e-155
Q4R779530 Nucleolar protein 58 OS=M N/A no 0.787 0.818 0.613 1e-155
Q6DFW4536 Nucleolar protein 58 OS=M yes no 0.787 0.809 0.611 1e-154
Q9QZ86534 Nucleolar protein 58 OS=R yes no 0.787 0.812 0.611 1e-153
O04656450 Putative nucleolar protei no no 0.704 0.862 0.662 1e-152
Q4PBF2582 Nucleolar protein 58 OS=U N/A no 0.784 0.742 0.560 1e-139
Q9P7S7508 Nucleolar protein 58 OS=S yes no 0.794 0.862 0.525 1e-136
P0CP26568 Nucleolar protein 58 OS=C yes no 0.787 0.764 0.524 1e-133
>sp|Q9MAB3|NOP5B_ARATH Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1 Back     alignment and function desciption
 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/444 (83%), Positives = 411/444 (92%)

Query: 1   MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAA 60
           +LVL+ET AGFALFKV DEGK++ VE L +EF++ +SAR++VKLKAF KF+NTSEAL+A 
Sbjct: 2   VLVLYETAAGFALFKVKDEGKMANVEDLCKEFDTPDSARKMVKLKAFEKFDNTSEALEAV 61

Query: 61  TCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQ 120
             LLE  PSK LRKFL+ +C GETLAVADSKLGN IK+KLKI+C+HNNAVMEL+RGVRSQ
Sbjct: 62  AKLLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGVRSQ 121

Query: 121 LTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMR 180
            TELISGL  QDL PMSLGLSHSL+RYKLKFS+DKVDTMIIQAIGLLDDLDKELNTYAMR
Sbjct: 122 FTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMR 181

Query: 181 VREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISM 240
           VREWYGWHFPELAKII DNILYAK+VKLMG+R NAAKLDFSEIL +E+EA LK+AA+ISM
Sbjct: 182 VREWYGWHFPELAKIISDNILYAKSVKLMGNRVNAAKLDFSEILADEIEADLKDAAVISM 241

Query: 241 GTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHG 300
           GTEVSDLDLL+I+ELCDQVLSL+EYRAQLYDYLKSRMNT+APNLTALVGELVGARLI+HG
Sbjct: 242 GTEVSDLDLLHIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHG 301

Query: 301 GSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSL 360
           GSLLNL+KQPGSTVQILGAEKALFRALKTKHATPKYGLI+HASLVGQAAPKHKGKISRSL
Sbjct: 302 GSLLNLSKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASLVGQAAPKHKGKISRSL 361

Query: 361 ASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKD 420
           A+KT LAIR DALGD QDN+MGLENRAKLEARLRNLEGK+LGR +GS+KGKPKIEVY+KD
Sbjct: 362 AAKTVLAIRVDALGDSQDNTMGLENRAKLEARLRNLEGKDLGRLSGSSKGKPKIEVYNKD 421

Query: 421 RKKGPGAMITAAKTYNPAADSILG 444
           +K G G +IT AKTYN AADS+LG
Sbjct: 422 KKMGSGGLITPAKTYNTAADSLLG 445
Required for 60S ribosomal subunit biogenesis.
Arabidopsis thaliana (taxid: 3702)
>sp|O04658|NOP5A_ARATH Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y2X3|NOP58_HUMAN Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1 SV=1 Back     alignment and function description
>sp|Q4R779|NOP58_MACFA Nucleolar protein 58 OS=Macaca fascicularis GN=NOP58 PE=2 SV=1 Back     alignment and function description
>sp|Q6DFW4|NOP58_MOUSE Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1 SV=1 Back     alignment and function description
>sp|Q9QZ86|NOP58_RAT Nucleolar protein 58 OS=Rattus norvegicus GN=Nop58 PE=1 SV=1 Back     alignment and function description
>sp|O04656|NOP5C_ARATH Putative nucleolar protein 5-3 OS=Arabidopsis thaliana GN=NOP5-3 PE=2 SV=2 Back     alignment and function description
>sp|Q4PBF2|NOP58_USTMA Nucleolar protein 58 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NOP58 PE=3 SV=1 Back     alignment and function description
>sp|Q9P7S7|NOP58_SCHPO Nucleolar protein 58 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop58 PE=1 SV=1 Back     alignment and function description
>sp|P0CP26|NOP58_CRYNJ Nucleolar protein 58 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NOP58 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
359487861573 PREDICTED: probable nucleolar protein 5- 0.827 0.795 0.907 0.0
298204937474 unnamed protein product [Vitis vinifera] 0.827 0.962 0.907 0.0
147788189472 hypothetical protein VITISV_038844 [Viti 0.827 0.966 0.903 0.0
13623892555 MAR-binding protein [Nicotiana tabacum] 0.813 0.807 0.883 0.0
99646745572 matrix attachment region binding protein 0.805 0.776 0.894 0.0
356538739551 PREDICTED: probable nucleolar protein 5- 0.831 0.831 0.853 0.0
356545126556 PREDICTED: probable nucleolar protein 5- 0.831 0.823 0.853 0.0
255585026558 nucleolar protein nop56, putative [Ricin 0.978 0.965 0.796 0.0
224125484561 predicted protein [Populus trichocarpa] 0.820 0.805 0.865 0.0
255542428575 nucleolar protein nop56, putative [Ricin 0.967 0.926 0.756 0.0
>gi|359487861|ref|XP_002273273.2| PREDICTED: probable nucleolar protein 5-2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  860 bits (2223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/456 (90%), Positives = 443/456 (97%)

Query: 1   MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAA 60
           MLVLFETPAGFALFKVLDEGKLSKVE LW+EF+S+ESARQ+VKLKAFSKFENT+EAL AA
Sbjct: 1   MLVLFETPAGFALFKVLDEGKLSKVEDLWKEFSSSESARQVVKLKAFSKFENTTEALSAA 60

Query: 61  TCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQ 120
           T L++SKPSK LRKFLR HCDGETLAVADSKLGNAIK+KL+IECVHNNAVMELMRGVRSQ
Sbjct: 61  TLLIDSKPSKGLRKFLRVHCDGETLAVADSKLGNAIKEKLQIECVHNNAVMELMRGVRSQ 120

Query: 121 LTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMR 180
           LTELISGLA QDL PMSLGLSHSLSRYKLKFS DKVDTMIIQAIGLLDDLDKELNTYAMR
Sbjct: 121 LTELISGLAVQDLAPMSLGLSHSLSRYKLKFSPDKVDTMIIQAIGLLDDLDKELNTYAMR 180

Query: 181 VREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISM 240
           VREWYGWHFPELAKI+QDNILYAKAVKLMG+R+NAAKLDFSEILPEEVE +LKEAAMISM
Sbjct: 181 VREWYGWHFPELAKIVQDNILYAKAVKLMGNRTNAAKLDFSEILPEEVETELKEAAMISM 240

Query: 241 GTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHG 300
           GTEVSDLDL+NIKELCDQVLSL+EYRAQLYDYLKSRMNT+APNLTALVGELVGARLIAHG
Sbjct: 241 GTEVSDLDLMNIKELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLIAHG 300

Query: 301 GSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSL 360
           GSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASL+GQAAPK KGKISRSL
Sbjct: 301 GSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKLKGKISRSL 360

Query: 361 ASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKD 420
           A+KTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEG+ELG +AGSAKGKPKIEVYDKD
Sbjct: 361 AAKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGRELGHSAGSAKGKPKIEVYDKD 420

Query: 421 RKKGPGAMITAAKTYNPAADSILGLMENAASKDDEE 456
           RKKG GA+ITAAKTYNPAADS+LG +E++A++++EE
Sbjct: 421 RKKGSGALITAAKTYNPAADSVLGRIEDSAAREEEE 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|298204937|emb|CBI34244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147788189|emb|CAN73717.1| hypothetical protein VITISV_038844 [Vitis vinifera] Back     alignment and taxonomy information
>gi|13623892|dbj|BAB41076.1| MAR-binding protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|99646745|emb|CAK22424.1| matrix attachment region binding protein [Beta vulgaris] Back     alignment and taxonomy information
>gi|356538739|ref|XP_003537858.1| PREDICTED: probable nucleolar protein 5-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356545126|ref|XP_003540996.1| PREDICTED: probable nucleolar protein 5-2-like [Glycine max] Back     alignment and taxonomy information
>gi|255585026|ref|XP_002533223.1| nucleolar protein nop56, putative [Ricinus communis] gi|223526966|gb|EEF29163.1| nucleolar protein nop56, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224125484|ref|XP_002319598.1| predicted protein [Populus trichocarpa] gi|222857974|gb|EEE95521.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255542428|ref|XP_002512277.1| nucleolar protein nop56, putative [Ricinus communis] gi|223548238|gb|EEF49729.1| nucleolar protein nop56, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
TAIR|locus:2096214533 AT3G05060 "AT3G05060" [Arabido 0.833 0.861 0.806 1.5e-195
TAIR|locus:2181211533 AT5G27120 "AT5G27120" [Arabido 0.803 0.831 0.832 1.5e-193
UNIPROTKB|E1BUS2527 NOP58 "Uncharacterized protein 0.820 0.857 0.613 4.3e-141
UNIPROTKB|F1N218529 NOP58 "Uncharacterized protein 0.787 0.820 0.613 8e-140
UNIPROTKB|Q9Y2X3529 NOP58 "Nucleolar protein 58" [ 0.787 0.820 0.613 1e-139
MGI|MGI:1933184536 Nop58 "NOP58 ribonucleoprotein 0.818 0.841 0.593 9.2e-139
RGD|620484534 Nop58 "NOP58 ribonucleoprotein 0.818 0.844 0.593 3.1e-138
UNIPROTKB|I3LDD2416 NOP58 "Uncharacterized protein 0.749 0.992 0.633 3.2e-136
FB|FBgn0026196511 nop5 "nop5" [Drosophila melano 0.820 0.884 0.565 4.4e-132
POMBASE|SPAC23G3.06508 SPAC23G3.06 "U3 snoRNP protein 0.725 0.787 0.626 4.8e-126
TAIR|locus:2096214 AT3G05060 "AT3G05060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1894 (671.8 bits), Expect = 1.5e-195, P = 1.5e-195
 Identities = 372/461 (80%), Positives = 419/461 (90%)

Query:     1 MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAA 60
             +LVL+ET AGFALFKV DEGK++ VE L +EF++ +SAR++VKLKAF KF+NTSEAL+A 
Sbjct:     2 VLVLYETAAGFALFKVKDEGKMANVEDLCKEFDTPDSARKMVKLKAFEKFDNTSEALEAV 61

Query:    61 TCLLESKPSKDLRKFLRTHCDGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQ 120
               LLE  PSK LRKFL+ +C GETLAVADSKLGN IK+KLKI+C+HNNAVMEL+RGVRSQ
Sbjct:    62 AKLLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGVRSQ 121

Query:   121 LTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMR 180
              TELISGL  QDL PMSLGLSHSL+RYKLKFS+DKVDTMIIQAIGLLDDLDKELNTYAMR
Sbjct:   122 FTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMR 181

Query:   181 VREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISM 240
             VREWYGWHFPELAKII DNILYAK+VKLMG+R NAAKLDFSEIL +E+EA LK+AA+ISM
Sbjct:   182 VREWYGWHFPELAKIISDNILYAKSVKLMGNRVNAAKLDFSEILADEIEADLKDAAVISM 241

Query:   241 GTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHG 300
             GTEVSDLDLL+I+ELCDQVLSL+EYRAQLYDYLKSRMNT+APNLTALVGELVGARLI+HG
Sbjct:   242 GTEVSDLDLLHIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHG 301

Query:   301 GSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSL 360
             GSLLNL+KQPGSTVQILGAEKALFRALKTKHATPKYGLI+HASLVGQAAPKHKGKISRSL
Sbjct:   302 GSLLNLSKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASLVGQAAPKHKGKISRSL 361

Query:   361 ASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKELGRAAGSAKGKPKIEVYDKD 420
             A+KT LAIR DALGD QDN+MGLENRAKLEARLRNLEGK+LGR +GS+KGKPKIEVY+KD
Sbjct:   362 AAKTVLAIRVDALGDSQDNTMGLENRAKLEARLRNLEGKDLGRLSGSSKGKPKIEVYNKD 421

Query:   421 RKKGPGAMITAAKTYNPAADSILGLMENAASKDDEEKPMEE 461
             +K G G +IT AKTYN AADS+LG  E +A  ++  K  ++
Sbjct:   422 KKMGSGGLITPAKTYNTAADSLLG--ETSAKSEEPSKKKDK 460
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005730 "nucleolus" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TAIR|locus:2181211 AT5G27120 "AT5G27120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUS2 NOP58 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N218 NOP58 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2X3 NOP58 "Nucleolar protein 58" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1933184 Nop58 "NOP58 ribonucleoprotein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620484 Nop58 "NOP58 ribonucleoprotein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LDD2 NOP58 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0026196 nop5 "nop5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPAC23G3.06 SPAC23G3.06 "U3 snoRNP protein Nop58 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2QE38NOP58_ASPNCNo assigned EC number0.52950.78580.7465yesno
Q6DFW4NOP58_MOUSENo assigned EC number0.61120.78760.8097yesno
Q6BIX6NOP58_DEBHANo assigned EC number0.55120.76220.8123yesno
Q9QZ86NOP58_RATNo assigned EC number0.61120.78760.8127yesno
Q5B8G3NOP58_EMENINo assigned EC number0.52960.78400.7372yesno
Q2UC04NOP58_ASPORNo assigned EC number0.56550.72590.6920yesno
Q753I4NOP58_ASHGONo assigned EC number0.56800.74950.8050yesno
Q9Y2X3NOP58_HUMANNo assigned EC number0.61340.78760.8204yesno
Q6FQ21NOP58_CANGANo assigned EC number0.55470.74770.8031yesno
Q12499NOP58_YEASTNo assigned EC number0.53370.77130.8317yesno
Q9P7S7NOP58_SCHPONo assigned EC number0.52500.79490.8622yesno
Q55FI4NOP58_DICDINo assigned EC number0.57000.74040.6394yesno
O04658NOP5A_ARATHNo assigned EC number0.83290.80390.8311nono
Q9MAB3NOP5B_ARATHNo assigned EC number0.83100.80580.8330yesno
P0CP26NOP58_CRYNJNo assigned EC number0.52470.78760.7640yesno
Q6CKR8NOP58_KLULANo assigned EC number0.55380.77130.8317yesno
Q6CG46NOP58_YARLINo assigned EC number0.54700.78030.8349yesno
A3LUT0NOP58_PICSTNo assigned EC number0.53330.80030.8563yesno
Q4WYK9NOP58_ASPFUNo assigned EC number0.52970.83840.7817yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00031075001
SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (573 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037695001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)
•  •• • 0.987
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •• • 0.932
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •• • 0.897
GSVIVG00018638001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)
   •• • 0.876
GSVIVG00033408001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)
   •• • 0.868
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •• • 0.850
GSVIVG00036355001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)
   •• • 0.844
GSVIVG00025475001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (188 aa)
   •• • 0.841
GSVIVG00038815001
SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)
   •• • 0.835
GSVIVG00007719001
SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)
   •• • 0.828

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
COG1498395 COG1498, SIK1, Protein implicated in ribosomal bio 1e-113
pfam01798149 pfam01798, Nop, Putative snoRNA binding domain 1e-75
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 3e-68
pfam0806052 pfam08060, NOSIC, NOSIC (NUC001) domain 1e-28
smart0093152 smart00931, NOSIC, NOSIC (NUC001) domain 3e-27
pfam0815667 pfam08156, NOP5NT, NOP5NT (NUC127) domain 9e-23
pfam10243 506 pfam10243, MIP-T3, Microtubule-binding protein MIP 2e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-05
PTZ00053 470 PTZ00053, PTZ00053, methionine aminopeptidase 2; P 4e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-04
PLN02381 1066 PLN02381, PLN02381, valyl-tRNA synthetase 5e-04
PRK04195482 PRK04195, PRK04195, replication factor C large sub 5e-04
pfam04615 728 pfam04615, Utp14, Utp14 protein 5e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 9e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PRK04195482 PRK04195, PRK04195, replication factor C large sub 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PLN02967 581 PLN02967, PLN02967, kinase 0.003
pfam00183 529 pfam00183, HSP90, Hsp90 protein 0.004
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  342 bits (879), Expect = e-113
 Identities = 165/392 (42%), Positives = 225/392 (57%), Gaps = 16/392 (4%)

Query: 43  KLKAFSKFENTSEALKAATCLLESK-PSKDLRKFLRTHCDGE---TLAVADSKLGNAIKD 98
            L  F  F + ++AL+    + E    S           +GE    L V D+KLGNA   
Sbjct: 2   SLVDFEPFPSDADALEEELLISEGGVSSALEVNLELELIEGEKKLELVVCDTKLGNA--- 58

Query: 99  KLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDT 158
                 + +    +L       L EL S     D   M LGL H LSR K++   DK D 
Sbjct: 59  -DSAFEIPSEVGEDLRENAEEALGELSSSDED-DYYRMLLGLGHELSRIKVREEVDKEDK 116

Query: 159 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAK- 217
           +IIQAI  LDD+DKE+N  AMR+REWYGWHFPEL+ ++ DN  YAK V  +G+R N  K 
Sbjct: 117 LIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGNRENINKE 176

Query: 218 --LDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKS 275
              D    LP+    ++ EAA  SMG ++S+ D+ NI+EL + +L L E R QL +Y++S
Sbjct: 177 SLKDLGFALPDIAI-KIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLEEYIES 235

Query: 276 RMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPK 335
           +M+ +APNLTALVG ++GARLI+H G L  LAK P ST+Q+LGAEKALFRALKT   TPK
Sbjct: 236 KMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALKTGAKTPK 295

Query: 336 YGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRN 395
           YG+IY + L+ ++ P  +GKI+R+LA+K A+A R DA     D   G+  R +LE R+  
Sbjct: 296 YGVIYQSPLIQKSPPWQRGKIARALAAKLAIAARIDAFSGEPD---GISLREELEKRIEK 352

Query: 396 LEGKELGRAAGSAKGKPKIEVYDKDRKKGPGA 427
           L+ K       +   + K E   + R+K    
Sbjct: 353 LKEKPPKPPTKAKPERDKKERPGRYRRKKKEK 384

Length = 395
>gnl|CDD|216709 pfam01798, Nop, Putative snoRNA binding domain Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|219731 pfam08156, NOP5NT, NOP5NT (NUC127) domain Back     alignment and domain information
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|215521 PLN02967, PLN02967, kinase Back     alignment and domain information
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 551
KOG2572498 consensus Ribosome biogenesis protein - Nop58p/Nop 100.0
KOG2573498 consensus Ribosome biogenesis protein - Nop56p/Sik 100.0
PRK14552414 C/D box methylation guide ribonucleoprotein comple 100.0
COG1498395 SIK1 Protein implicated in ribosomal biogenesis, N 100.0
KOG2574492 consensus mRNA splicing factor PRP31 [RNA processi 100.0
PF01798150 Nop: Putative snoRNA binding domain; InterPro: IPR 100.0
PF0806053 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 99.87
PF0815667 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR01297 99.8
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-144  Score=1112.58  Aligned_cols=434  Identities=73%  Similarity=1.055  Sum_probs=420.3

Q ss_pred             CEEeeeccceeeEEEecCcCcccchhhHHHHhcCHHHhhccEEeeeeecCCCHHHHHHHHHHhhhcCCCHHHHHHHHhcC
Q 008852            1 MLVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFENTSEALKAATCLLESKPSKDLRKFLRTHC   80 (551)
Q Consensus         1 m~vLfEt~~GyaLFkv~~~~~~~~~~~~~~~~~~~~~~~~~vkL~~f~~F~~~~~Al~~~~~i~eg~~~~~L~~fL~~~~   80 (551)
                      |||||||++|||||++.|++++.++++||+.|.+++.+.++|+|++|.+|.+|.+||+++++|.||++|..|++||+.++
T Consensus         1 mlvL~Eta~Gya~fk~~de~kl~~v~~l~~ef~s~e~a~~~~kl~~f~kf~~ta~alea~~~l~eGkvs~~L~k~lk~~~   80 (498)
T KOG2572|consen    1 MLVLFETAAGYALFKVLDEKKLANVDDLWKEFSSAEKALKMVKLVAFEKFDSTAEALEAVTALAEGKVSSGLEKFLKLNK   80 (498)
T ss_pred             CeEEEeeccceeeeeecchhhHhhHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEeccchhHHHHhhhCCccccchHHHHHHHHHHHhHHHHhcCCCCCChhhhhhhhhhhhhhhhhccccchhhHHH
Q 008852           81 DGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELISGLAGQDLQPMSLGLSHSLSRYKLKFSADKVDTMI  160 (551)
Q Consensus        81 ~~~~L~V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR~~~~~ll~~l~~~d~~~~~lgLshslsr~Klk~s~~k~D~~I  160 (551)
                      .+++|+|+|+|||+.|+++|+|+|++++.|++++||||+|+++|++|+.++|+.+|+|||+|+++||||+|+|+||||||
T Consensus        81 ~~etLaVaD~KLgn~i~ekL~~~~v~~~~v~el~RgiRs~l~el~~g~~~~dl~~msLglaHslar~Klkfs~dKvDtmI  160 (498)
T KOG2572|consen   81 KKETLAVADAKLGNAIKEKLSINCVHDSAVMELLRGIRSQLTELISGLNDSDLAAMSLGLAHSLARYKLKFSPDKVDTMI  160 (498)
T ss_pred             cCCeeeeccHHHhHHHHHhhcceeecchhHHHHHHHHHHHHHHHhccCChhhhhHHHHHHHHHHHhhhcccCcchhhHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHhccCccchhhccCcHHHHHHHHHhcCCCCCCcccccccCcHHHHHHHHHHHhhcc
Q 008852          161 IQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEILPEEVEAQLKEAAMISM  240 (551)
Q Consensus       161 Vqai~llddLDkeIn~~~~rvREwY~~hFPEL~~Iv~d~~~YakvV~~ig~r~n~~~~dL~~iL~~e~~~~v~~aA~~Sm  240 (551)
                      ||||+||||||+|||+|+||||||||||||||.+||.||+.|+++|+.||+|.|+...||++|||++++..+..||.+||
T Consensus       161 iQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~Yak~vk~mG~r~~~a~~d~sEil~eeiE~~~k~aAeiSM  240 (498)
T KOG2572|consen  161 IQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYAYAKLVKAMGVRCNAASLDFSEILPEEIEAELKEAAEISM  240 (498)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHhHhhhhhcccHHhhchHHHHHHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHhhCCcchhccCCchhhhhhchh
Q 008852          241 GTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAE  320 (551)
Q Consensus       241 G~~lse~Dl~~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQiLGAE  320 (551)
                      |++|++.|+.+|..+|+||+++.+||.||.+||++||+.||||||+|||++||||||+|||||.||||+|+|||||||||
T Consensus       241 gteis~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLaK~p~StIQilGAE  320 (498)
T KOG2572|consen  241 GTEISDSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLAKAPASTIQILGAE  320 (498)
T ss_pred             cccccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHhhCChhHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCCCCceEEEeeccccccCCcccccchhHhhhhhhHHHHhhhccCCCCCChhhHHHHHHHHHHHHHhhcCC
Q 008852          321 KALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNLEGKE  400 (551)
Q Consensus       321 KALFraLkt~~~tPKyGlIy~s~lV~~ap~k~kgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~re~Ie~rl~~l~~~~  400 (551)
                      |||||||+|+++|||||+|||++||+|+||+++|||+|.||||++||+|+|+|+++.+|.+|.+.|.+||+||+.|+++.
T Consensus       321 KALFrALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~klE~rlr~lE~r~  400 (498)
T KOG2572|consen  321 KALFRALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLEGRD  400 (498)
T ss_pred             HHHHHHHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccccccccCCCCcccccccccCCCcc
Q 008852          401 LGRAAGSAKGKPKIEVYDKDRKKGPGAMITAAKTYNPAAD  440 (551)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~y~~~~d  440 (551)
                      +.+.++.+++.++...|.....      ...+.+|++.+|
T Consensus       401 l~~~s~~~k~~~K~~~ye~~~~------~~~adt~~~~~~  434 (498)
T KOG2572|consen  401 LQESSILKKPLAKKEKYEGRSE------TTSADTYNTIRD  434 (498)
T ss_pred             cccccccccchhHHHHhccccc------cCcccccccccc
Confidence            9999888877777777764221      244455555555

>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification] Back     alignment and domain information
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins Back     alignment and domain information
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [] Back     alignment and domain information
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
3nmu_A379 Crystal Structure Of Substrate-Bound Halfmer Box CD 4e-44
2nnw_A376 Alternative Conformations Of Nop56/58-fibrillarin C 9e-44
3nvk_A376 Structural Basis For Substrate Placement By An Arch 2e-43
3id5_A388 Crystal Structure Of Sulfolobus Solfataricus CD RNP 2e-41
3nvm_A371 Structural Basis For Substrate Placement By An Arch 7e-40
3icx_A255 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 3e-39
3siu_B254 Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Com 4e-26
2ozb_B260 Structure Of A Human Prp31-15.5k-U4 Snrna Complex L 5e-26
3gqu_A169 Pyrococcus Horikoshii Nop5 Rna Binding Domain Lengt 2e-22
3id6_A268 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 3e-18
1nt2_B258 Crystal Structure Of FibrillarinNOP5P COMPLEX Lengt 2e-09
>pdb|3NMU|A Chain A, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP Length = 379 Back     alignment and structure 
Iteration: 1

 Score =  176 bits (445), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 153/258 (59%), Gaps = 4/258 (1%)
Query: 143 SLSRYKLKFSADKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILY 202
           +L+R +++  +   D M+IQAI  LDD+DK +N    R+REWY  HFPEL +++  +  Y
Sbjct: 124 ALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQY 183
Query: 203 AKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLS 261
              VK +G R N  +    E+ L EE   ++ EA   +MG  +   D+  +++L +++  
Sbjct: 184 VAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDR 243
Query: 262 LAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEK 321
           L + R +L DY+   M+ VAPNL ALVG  + ARLI+  G L  LA  P ST+Q+LGAEK
Sbjct: 244 LYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEK 303
Query: 322 ALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSM 381
           ALFR L+T    PK+G+IY    + ++    +GKI+R+LA K A+A R D         +
Sbjct: 304 ALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFS---GEYI 360
Query: 382 GLENRAKLEARLRNLEGK 399
             E + +LEAR+R ++ K
Sbjct: 361 AEELKKELEARIREIKEK 378
>pdb|2NNW|A Chain A, Alternative Conformations Of Nop56/58-fibrillarin Complex And Implication For Induced-fit Assenly Of Box C/d Rnps Length = 376 Back     alignment and structure
>pdb|3NVK|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 376 Back     alignment and structure
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half CD RNA Length = 388 Back     alignment and structure
>pdb|3NVM|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 371 Back     alignment and structure
>pdb|3ICX|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (135-380) Length = 255 Back     alignment and structure
>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex, Monomeric Form Length = 254 Back     alignment and structure
>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex Length = 260 Back     alignment and structure
>pdb|3GQU|A Chain A, Pyrococcus Horikoshii Nop5 Rna Binding Domain Length = 169 Back     alignment and structure
>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262) And Fibrillarin Complex Length = 268 Back     alignment and structure
>pdb|1NT2|B Chain B, Crystal Structure Of FibrillarinNOP5P COMPLEX Length = 258 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 100.0
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 100.0
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 100.0
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 100.0
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 100.0
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 100.0
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 100.0
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-112  Score=887.96  Aligned_cols=369  Identities=32%  Similarity=0.471  Sum_probs=350.2

Q ss_pred             EEeeeccceeeEEEecCcCcccchhhHHHHhcCHHHhhccEEeeeeecCC-CHHHHHHHHHHhhhcCCCHHHHHHHHhcC
Q 008852            2 LVLFETPAGFALFKVLDEGKLSKVEGLWQEFNSAESARQIVKLKAFSKFE-NTSEALKAATCLLESKPSKDLRKFLRTHC   80 (551)
Q Consensus         2 ~vLfEt~~GyaLFkv~~~~~~~~~~~~~~~~~~~~~~~~~vkL~~f~~F~-~~~~Al~~~~~i~eg~~~~~L~~fL~~~~   80 (551)
                      ..|+|++.||..|   |++                     .+|++|.||+ |+++||+++++|++|++++.|++||+.++
T Consensus         4 ~yl~~~~~G~~a~---de~---------------------~~l~~~~~f~~s~~~ale~~~~i~eg~~~~~L~~fL~~~~   59 (388)
T 3pla_A            4 IYLIEHVIGAVAY---DEN---------------------GNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVN   59 (388)
T ss_dssp             EEEEEETTEEEEE---CSS---------------------SCEEEEEECCSCHHHHHHHHHHHHTTCCCHHHHHHHHHSC
T ss_pred             EEEEecceeeEEE---CCC---------------------CCeEeecCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHhC
Confidence            5799999999999   331                     2889999997 99999999999999999999999999998


Q ss_pred             CCCeEEEeccchhHHHHhhhCCccccchHHHHHHHHHHHhHHHHhc--CCC--CCChhhhhhhhhhhhhhhhhccccchh
Q 008852           81 DGETLAVADSKLGNAIKDKLKIECVHNNAVMELMRGVRSQLTELIS--GLA--GQDLQPMSLGLSHSLSRYKLKFSADKV  156 (551)
Q Consensus        81 ~~~~L~V~D~kL~~~I~~~l~i~~~~~~~v~el~RgIR~~~~~ll~--~l~--~~d~~~~~lgLshslsr~Klk~s~~k~  156 (551)
                      + .+|+|+|++||.+|++. ||+|.+. ....++|+||.|+++++.  |+.  ++|+..|++||+|++||+||+|+++++
T Consensus        60 ~-~~l~V~d~~L~~~i~~~-~~~~~~~-~~~~~~~~iR~~~~~~~~~~g~~~~~~d~~~~~~~l~~~~sr~kvk~~~~k~  136 (388)
T 3pla_A           60 P-QEVVVENEAEVPKLQAL-GYRVSYE-PYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKR  136 (388)
T ss_dssp             C-SEEEESCTTTHHHHHHT-TCEEEEC-TTCHHHHHHHHTTTTHHHHTTSSSSSHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             C-CeEEEECHHHHHHHHHc-CCCeeec-CchHHHHHHHHhHHHHhHhcCCCCChHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence            7 67999999999999974 9999742 234567889999999996  666  778999999999999999999999999


Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCccchhhccCcHHHHHHHHHhcCCCCCCccccccc-CcHHHHHHHHHH
Q 008852          157 DTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAKLDFSEI-LPEEVEAQLKEA  235 (551)
Q Consensus       157 D~~IVqai~llddLDkeIn~~~~rvREwY~~hFPEL~~Iv~d~~~YakvV~~ig~r~n~~~~dL~~i-L~~e~~~~v~~a  235 (551)
                      |+||||||+++|+||+|||+||||||||||||||||++||+||++|+++|+.||+|.|++..+|+++ +|+++++.|.++
T Consensus       137 D~~Ivqai~lld~iDkein~~~~rvrewY~~hFPEL~~iV~d~~~Yak~V~~ignr~~~~~~~l~~l~l~~~~~~~I~~a  216 (388)
T 3pla_A          137 DLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDA  216 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGTTTCCCHHHHHHHHHHTCSGGGCCHHHHHTTTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcCCHHHHHHHHHHhcCcccCChhhHhhcCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 899999999999


Q ss_pred             HhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHhhCCcchhccCCchhhh
Q 008852          236 AMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQ  315 (551)
Q Consensus       236 A~~SmG~~lse~Dl~~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PAStIQ  315 (551)
                      |++|||++||++|+.+|..+|++|++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+||||||||||
T Consensus       217 A~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAK~PAstIQ  296 (388)
T 3pla_A          217 AKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQ  296 (388)
T ss_dssp             HHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSHHHHHTSCHHHHT
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccHHHHHHHHHcCCHHHHhhCChHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchhhhhhhhhhccCCCCceEEEeeccccccCCcccccchhHhhhhhhHHHHhhhccCCCCCChhhHHHHHHHHHHHHH
Q 008852          316 ILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRN  395 (551)
Q Consensus       316 iLGAEKALFraLkt~~~tPKyGlIy~s~lV~~ap~k~kgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~re~Ie~rl~~  395 (551)
                      ||||||||||||+|+++||||||||||++|+++||++||||+|+||+|||||||||+|+++   .+|.++|++|++||++
T Consensus       297 iLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~~ap~~~rgKiaR~LAaK~aLAARiD~~~g~---~~G~~lreeie~ri~k  373 (388)
T 3pla_A          297 VLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGR---FIGDQLNEQLKKRIDE  373 (388)
T ss_dssp             TSSCHHHHHHHHHHTCCCCSCSGGGGSHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCC---CCHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHhccCCCCCCeeEEecCHhhhhCCHHHhHHHHHHHHHHHHHHHhhcccCCc---ccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999853   5799999999999999


Q ss_pred             hhcCC
Q 008852          396 LEGKE  400 (551)
Q Consensus       396 l~~~~  400 (551)
                      |+++.
T Consensus       374 l~e~~  378 (388)
T 3pla_A          374 IKEKF  378 (388)
T ss_dssp             HHCC-
T ss_pred             HhCcc
Confidence            99864
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Back     alignment and structure
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Back     alignment and structure
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 551
d2ozbb1249 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucle 1e-108
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 2e-58
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Length = 249 Back     information, alignment and structure

class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  322 bits (828), Expect = e-108
 Identities = 66/241 (27%), Positives = 126/241 (52%), Gaps = 2/241 (0%)

Query: 159 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAK- 217
           +I+ A  L  +++ ELN     +R+ Y   FPEL  ++ + + Y + VK +G+  +  K 
Sbjct: 8   VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN 67

Query: 218 -LDFSEILPEEVEAQLKEAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSR 276
             +  +IL       +   A  + G ++S+ +L  ++E CD  L L   + ++Y+Y++SR
Sbjct: 68  NENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESR 127

Query: 277 MNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKY 336
           M+ +APNL+ ++G    A+++   G L NL+K P   + +LGA++       +    P  
Sbjct: 128 MSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHT 187

Query: 337 GLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARLRNL 396
           G IYH+ +V    P  + K +R +A+K  LA R D+  +  +  +G E + ++E +    
Sbjct: 188 GYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKW 247

Query: 397 E 397
           +
Sbjct: 248 Q 248
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
d2ozbb1249 U4/U6 small nuclear ribonucleoprotein Prp31 {Human 100.0
d1nt2b_256 Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 223 100.0
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-85  Score=647.31  Aligned_cols=243  Identities=27%  Similarity=0.522  Sum_probs=227.8

Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCccchhhccCcHHHHHHHHHhcCCCCCCc--ccccccCcHHHHHHHH
Q 008852          156 VDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIIQDNILYAKAVKLMGDRSNAAK--LDFSEILPEEVEAQLK  233 (551)
Q Consensus       156 ~D~~IVqai~llddLDkeIn~~~~rvREwY~~hFPEL~~Iv~d~~~YakvV~~ig~r~n~~~--~dL~~iL~~e~~~~v~  233 (551)
                      .++||||||+++|+||+|||.||||||||||||||||++||+||.+|+++|+.|||+.+++.  .+|.++|++++++.|.
T Consensus         5 Ey~lIvq~~~l~~~iD~ein~~~~~lrewY~~~FPEL~~lv~~~~~Y~~~V~~i~~~~~~~~~~~~l~~~l~~~~~~~i~   84 (249)
T d2ozbb1           5 EYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVS   84 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGGTSCHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcChhHHHHcCCHHHHHHHHHHHcCccccccchhHHHHhCCHHHHHHHH
Confidence            34589999999999999999999999999999999999999999999999999999998855  5799999999999999


Q ss_pred             HHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchhhhhchHHHHHHHHhhCCcchhccCCchh
Q 008852          234 EAAMISMGTEVSDLDLLNIKELCDQVLSLAEYRAQLYDYLKSRMNTVAPNLTALVGELVGARLIAHGGSLLNLAKQPGST  313 (551)
Q Consensus       234 ~aA~~SmG~~lse~Dl~~I~~~~~~vi~L~e~R~~L~~YL~srM~~IAPNLtaLVG~~vaArLIs~AGsL~~LAK~PASt  313 (551)
                      ++|++|||++|+++|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||+|||||.+||+|||||
T Consensus        85 ~aa~~s~G~~ls~~dl~~i~~~~~~i~~L~~~r~~l~~yi~~rm~~iAPNl~aLvG~~~aArLi~~AGgL~~LAk~Past  164 (249)
T d2ozbb1          85 VTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACN  164 (249)
T ss_dssp             HHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTSCHHH
T ss_pred             HHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHCchHHHHHHHHhCCHHHHHhCChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhchhhhhhhhhhccCCCCceEEEeeccccccCCcccccchhHhhhhhhHHHHhhhccCCCCCChhhHHHHHHHHHHH
Q 008852          314 VQILGAEKALFRALKTKHATPKYGLIYHASLVGQAAPKHKGKISRSLASKTALAIRYDALGDGQDNSMGLENRAKLEARL  393 (551)
Q Consensus       314 IQiLGAEKALFraLkt~~~tPKyGlIy~s~lV~~ap~k~kgKiaR~LAaK~aLAARvDa~~~~~d~~~G~~~re~Ie~rl  393 (551)
                      ||+|||+|++|+||++++.||||||||||++|+++||++||||+|+||+|||||||||+|+++++|++|.+||++|++||
T Consensus       165 Iq~LGaeKalf~~l~~~~~~pk~G~i~~~~~V~~~p~~~rgk~~R~lA~K~slAARiD~~~~~~~~~~G~~~r~~ie~ki  244 (249)
T d2ozbb1         165 IMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKF  244 (249)
T ss_dssp             HTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHhcCCCCCCCCeeecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHhHcCCCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 008852          394 RNLEG  398 (551)
Q Consensus       394 ~~l~~  398 (551)
                      ++|++
T Consensus       245 ~k~~E  249 (249)
T d2ozbb1         245 DKWQE  249 (249)
T ss_dssp             HHHCC
T ss_pred             HHhcC
Confidence            99975
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure