Citrus Sinensis ID: 008856
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.593 | 0.229 | 0.303 | 2e-24 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.294 | 0.163 | 0.345 | 2e-13 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.667 | 0.282 | 0.256 | 3e-10 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.361 | 0.205 | 0.305 | 4e-10 | |
| Q9LVT1 | 623 | Putative disease resistan | no | no | 0.166 | 0.147 | 0.294 | 4e-08 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.762 | 0.429 | 0.216 | 6e-07 | |
| Q9FKZ0 | 815 | Probable disease resistan | no | no | 0.186 | 0.126 | 0.283 | 9e-07 | |
| Q9RBS2 | 1024 | Protein PopC OS=Ralstonia | no | no | 0.430 | 0.231 | 0.302 | 1e-06 | |
| Q9LZ25 | 811 | Probable disease resistan | no | no | 0.206 | 0.140 | 0.296 | 2e-06 | |
| Q9FKZ2 | 415 | Probable disease resistan | no | no | 0.270 | 0.359 | 0.278 | 5e-06 |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 120/395 (30%), Positives = 186/395 (47%), Gaps = 68/395 (17%)
Query: 164 VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLT 223
+ LP L+ + I CD L SLPE + ++ +L L I C SL P++LK L
Sbjct: 1087 MELPQNLQSLHIDSCDGLTSLPEN-LTESYPNLHELLIIACHSLESFPGSHPPTTLKTLY 1145
Query: 224 IWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGI-RYCPSLTCIFSKNELPATLESLEV 282
I C + L E +Q +R Y+ LE+L I C +L P +L
Sbjct: 1146 IRDC---KKLNFTESLQ---PTRSYSQ--LEYLFIGSSCSNLV------NFPLSLF---- 1187
Query: 283 GNLPPSLKSLRVRYCSKLESI---AERLDNNTSLETISIYNCENLKILPSGLHKLHQLRE 339
P L+SL +R C ++ A D+ +LE++ I +C NL+
Sbjct: 1188 ----PKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLE-------------- 1229
Query: 340 ISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG--ALLSL 397
+FP GGLP KL+++ + +CK+L+ALP+ L L++L L I + ++
Sbjct: 1230 ----------TFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETI 1279
Query: 398 EEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKR 457
G P+NL +L I + IEW G +LR+L IDG ++D + SFP E
Sbjct: 1280 PGGGFPSNLRTLCI-SLCDKLTPRIEW--GLRDLENLRNLEIDGGNED--IESFPEEG-- 1332
Query: 458 LGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLL 516
LP ++ SLRI F NL+ L+ D + + + + GC KL+ ++ LP L
Sbjct: 1333 -----LLPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLP-PLS 1386
Query: 517 ELWISGCPLIEEKCRKDGGQYWDLLTHIPLVAIYG 551
L IS C L+ E + +++ +L +IP V I G
Sbjct: 1387 CLRISSCSLLTETFAEVETEFFKVL-NIPYVEIDG 1420
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 26/188 (13%)
Query: 218 SLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATL 277
SLK L IW+ +++ L EEG ++ +LE + I YCP +F L +++
Sbjct: 786 SLKKLRIWFFRSLKGLMKEEG------EEKFP--MLEEMAILYCP----LFVFPTL-SSV 832
Query: 278 ESLEV-GNLP----------PSLKSLRVRYCSKLESIAERLDNN-TSLETISIYNCENLK 325
+ LEV GN +L SLR+ + S+ E + + T+LE +S ++ +NLK
Sbjct: 833 KKLEVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLK 892
Query: 326 ILPSGLHKLHQLREISIGSCGNLVSFPGGGLP-CAKLTALEIYDCKRLKALPKGLHNLST 384
LP+ L L+ L+ + I SC +L SFP GL LT L + CK LK LP+GL +L+
Sbjct: 893 DLPTSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTA 952
Query: 385 LQDLTIGG 392
L +L + G
Sbjct: 953 LTNLGVSG 960
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 187/429 (43%), Gaps = 61/429 (14%)
Query: 123 LEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDAL 181
L+ + L Y L ++P S +++ L E+++ C SLV+ P + +KL + + +C L
Sbjct: 615 LKEMNLRYSNNLKEIPDLSLAIN-LEELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKL 673
Query: 182 KSLPEAWMCDTN-SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQ 240
+S P D N SLE L++ GC +L A+++ S + + + + VE+
Sbjct: 674 ESFP----TDLNLESLEYLNLTGCPNLRNFPAIKMGCS----DVDFPEGRNEIVVEDCFW 725
Query: 241 CSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLP--------PSLKSL 292
+ G+ Y LT P L L V SL SL
Sbjct: 726 NKNLPA----------GLDYLDCLTRCMPCEFRPEQLAFLNVRGYKHEKLWEGIQSLGSL 775
Query: 293 RVRYCSKLESIAE--RLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVS 350
S+ E++ E L T LE++ + NC++L LPS + LH+L + + C L
Sbjct: 776 EGMDLSESENLTEIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEV 835
Query: 351 FPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPT---NLH 407
P + + L L++ C L++ P N+ L L + + +P+ NLH
Sbjct: 836 LP-TDVNLSSLETLDLSGCSSLRSFPLISTNIVWLY-------LENTAIEEIPSTIGNLH 887
Query: 408 SLVIRGNMEIWK-SMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFP----------LEDK 456
LV +E+ K + +E SSL L + GC + + SFP LE+
Sbjct: 888 RLV---RLEMKKCTGLEVLPTDVNLSSLETLDLSGC---SSLRSFPLISESIKWLYLENT 941
Query: 457 RLGTV--LRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSS 514
+ + L T L +L++ + +L L ++I +L+ L ++ C L+ P SS
Sbjct: 942 AIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDVNLSS 1001
Query: 515 LLELWISGC 523
L+ L +SGC
Sbjct: 1002 LMILDLSGC 1010
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Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 109/239 (45%), Gaps = 40/239 (16%)
Query: 196 LEILSIH-GCRSLTYIAAVQL------PS-----SLKMLTIWYCDNIRTLTVEEGIQCSS 243
LE L +H G + Y+ V + P+ SL+ L IW +++ L +EG +
Sbjct: 755 LESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFP 814
Query: 244 SSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESI 303
+LE + I CP LT L + L +L SLR+ Y S
Sbjct: 815 --------VLEEMIIHECPFLT-------LSSNLRAL---------TSLRICYNKVATSF 850
Query: 304 AERLDNN-TSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLP-CAKL 361
E + N +L+ ++I C NLK LP+ L L+ L+ + I C L S P GL + L
Sbjct: 851 PEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSL 910
Query: 362 TALEIYDCKRLKALPKGLHNLSTLQDLTIGG--ALLSLEEDGLPTNLHSLVIRGNMEIW 418
T L + C LK LP+GL +L+TL L I G L+ E G+ + H + N+ I+
Sbjct: 911 TELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIY 969
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%)
Query: 279 SLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLR 338
++++ + P L + + YC L + + TSL +ISI NC N+K LP + KL L+
Sbjct: 455 AIDIAQIFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQ 514
Query: 339 EISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTI 390
+ + +C L S P +L ++I C L +LP+ + N+ TL+ + +
Sbjct: 515 LLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDM 566
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 115/530 (21%), Positives = 209/530 (39%), Gaps = 110/530 (20%)
Query: 59 IPKLEELKINNIQNETCIWKSHNEL---LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQ 115
+ K L++ N++N N+L + D+ L+ L ++ ++++L ++
Sbjct: 521 LQKFVSLRVLNLRNSNL-----NQLPSSIGDLVHLRYLDLSGNFRIRNL--------PKR 567
Query: 116 LCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQI 175
LC+L L+ L L YC+ L LP+ + L SLR + + CS + P + L + LK +
Sbjct: 568 LCKLQ-NLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLS- 625
Query: 176 GECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTV 235
C + + + L+ L+++G S+T + V+ + K + N+ +L +
Sbjct: 626 --CFVIGKRKGHQLGE----LKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCL 679
Query: 236 EEGIQCSSSSRRYTSYLLE----HLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKS 291
+ RY S +LE H ++Y F LP + + N+ S
Sbjct: 680 SWDL---DGKHRYDSEVLEALKPHSNLKYLE--INGFGGIRLPDWMNQSVLKNVV----S 730
Query: 292 LRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSF 351
+R+R CEN LP +L L + + + V +
Sbjct: 731 IRIR------------------------GCENCSCLPP-FGELPCLESLELHTGSADVEY 765
Query: 352 PGGGLPCAKLTALE---IYDCKRLKALPK--GLHNLSTLQDLTIGGALLSLEEDGLPTNL 406
+ + +L I+D LK L K G L+++T + + +PT
Sbjct: 766 VEDNVHPGRFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFV----IPT-- 819
Query: 407 HSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPT 466
+++ K ++ S+LR LT D+ S P E + +
Sbjct: 820 -----LSSVKTLKVIVTDATVLRSISNLRALTSLDISDNVEATSLPEE------MFKSLA 868
Query: 467 TLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLP--SSLLELWISGC- 523
L L+I F NL+ L +S+ L L L C L+ PE+G+ +SL EL +S C
Sbjct: 869 NLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCM 928
Query: 524 -----------------------PLIEEKCRKDGGQYWDLLTHIPLVAIY 550
P++ ++C + G+ W + HIP + +Y
Sbjct: 929 MLKCLPEGLQHLTALTTLTITQCPIVFKRCERGIGEDWHKIAHIPYLTLY 978
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 278 ESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQL 337
E ++V +L+ + + YC L+ + + SL+T+SI NC L LP + L +L
Sbjct: 646 EDIDVSKALSNLQEIDIDYCYDLDELPYWIPEVVSLKTLSITNCNKLSQLPEAIGNLSRL 705
Query: 338 REISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTI 390
+ + SC NL P + L +L+I C L+ LP+ + L L+++++
Sbjct: 706 EVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISM 758
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 125/291 (42%), Gaps = 54/291 (18%)
Query: 277 LESLEVGNLP------PSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG 330
L+SL V LP LK+L C L ++ L+N LET+S+ +N K LP
Sbjct: 208 LKSLPVPELPDVTFEIAHLKNLETVDCD-LHALPATLENLFLLETLSLKGAKNFKALPDA 266
Query: 331 LHKLHQLREISIGSCGNLVSFP--GGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDL 388
+ +L L+E+ + G L S P GGG +LT I D L+ LP G +L L L
Sbjct: 267 VWRLPALQELKLSETG-LKSLPPVGGGSALQRLT---IEDSP-LEQLPAGFADLDQLASL 321
Query: 389 TIGGALLSLEEDG---LPTNLHSLVIRGNMEIWK-----SMIEW----GRGFHR------ 430
++ L G LP L SL ++ N ++ + +E G H
Sbjct: 322 SLSNTKLEKLSSGIGQLPA-LKSLSLQDNPKLERLPKSLGQVEELTLIGGRIHALPSASG 380
Query: 431 FSSLRHLTIDGCDDDTMMVSFPLEDKRLG---------TVLR-LPT------TLTSLRIE 474
SSL+ LT+ D++ + P + LG T LR LP TL +L ++
Sbjct: 381 MSSLQKLTV----DNSSLAKLPADFGALGNLAHVSLSNTKLRDLPASIGNLFTLKTLSLQ 436
Query: 475 DFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525
D P L L +S L L EL L G ++ P G SSL L + L
Sbjct: 437 DNPKLGSLPASFGQLSGLQELTLNGN-RIHELPSMGGASSLQTLTVDDTAL 486
|
Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) |
| >sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%)
Query: 264 LTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCEN 323
L+ IF K L++ + P L L + +C L + + TSL +ISI NC
Sbjct: 628 LSLIFCKINTSLDQTELDIAQIFPKLSDLTIDHCDDLLELPSTICGITSLNSISITNCPR 687
Query: 324 LKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLS 383
+K LP L KL L+ + + +C L S P +L ++I C L +LP+ + +
Sbjct: 688 IKELPKNLSKLKALQLLRLYACHELNSLPVEICELPRLKYVDISQCVSLSSLPEKIGKVK 747
Query: 384 TLQDL 388
TL+ +
Sbjct: 748 TLEKI 752
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKZ2|DRL41_ARATH Probable disease resistance protein At5g66890 OS=Arabidopsis thaliana GN=At5g66890 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 20/169 (11%)
Query: 218 SLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATL 277
SL+ L++W+C + L E + + S L+ + I YC +L +ELP +
Sbjct: 229 SLEKLSLWFCHVVDALNELEDVSETLQS-------LQEIEIDYCYNL------DELPYWI 275
Query: 278 ESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQL 337
+ SLK L V C+KL + E + + LET+ + +C +L LP + +L L
Sbjct: 276 SQV------VSLKKLSVTNCNKLCRVIEAIGDLRDLETLRLSSCASLLELPETIDRLDNL 329
Query: 338 REISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQ 386
R + + L + P KL + + DC R + LP + NL L+
Sbjct: 330 RFLDVSGGFQLKNLPLEIGKLKKLEKISMKDCYRCE-LPDSVKNLENLE 377
|
Possible disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | ||||||
| 224132254 | 552 | predicted protein [Populus trichocarpa] | 0.921 | 0.920 | 0.403 | 2e-81 | |
| 356554923 | 1399 | PREDICTED: putative disease resistance R | 0.872 | 0.343 | 0.374 | 6e-70 | |
| 284026888 | 1424 | CC-NBS-LRR protein [Quercus suber] | 0.860 | 0.332 | 0.357 | 2e-65 | |
| 45826061 | 739 | resistance protein [Quercus suber] | 0.740 | 0.552 | 0.392 | 2e-61 | |
| 400131587 | 1388 | FB_MR5 [Malus x robusta] | 0.847 | 0.336 | 0.361 | 5e-58 | |
| 225449649 | 1418 | PREDICTED: putative disease resistance p | 0.896 | 0.348 | 0.355 | 9e-58 | |
| 224059584 | 1418 | cc-nbs-lrr resistance protein [Populus t | 0.796 | 0.309 | 0.365 | 1e-52 | |
| 225450023 | 1396 | PREDICTED: putative disease resistance p | 0.820 | 0.323 | 0.316 | 2e-50 | |
| 359495054 | 1347 | PREDICTED: putative disease resistance R | 0.773 | 0.316 | 0.353 | 2e-49 | |
| 359495085 | 1345 | PREDICTED: putative disease resistance p | 0.789 | 0.323 | 0.350 | 2e-49 |
| >gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 228/565 (40%), Positives = 309/565 (54%), Gaps = 57/565 (10%)
Query: 17 MEIGGCKKVVWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCI 76
M I GCK+VV+ +L S NS+ + S +LA + +++EL+I N T +
Sbjct: 1 MVINGCKEVVYEGGV-YLRSLNSMTISNISKLTYLAEGFIQPLAEVQELEIANCMELTSL 59
Query: 77 WKSHNELLQDICSLKRLTITSCPKLQSLV-AEEEKDQQQQLCQLSCRLEYLILSYCEGLV 135
+++ L + + SL +L + +CP++ SL+ E QQQL +C+LE L S CE L
Sbjct: 60 YENGVALAKQLTSLLKLEVRNCPQVVSLMEGEVPVYMQQQLA--NCKLESLTFSTCESLK 117
Query: 136 KLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEA----WMCD 191
KLPQ SL SL+E++I C L+SFPE LPS L+ I+I C+AL LP A MC
Sbjct: 118 KLPQWVHSLVSLKELKIQYCPRLLSFPEAGLPSTLRIIEIVGCNALTPLPAAVTYNMMC- 176
Query: 192 TNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTL----------TVEEGIQC 241
LE L I C SL +QLP +LK L I YC+N+ L +E C
Sbjct: 177 ----LEQLRIENCESLISFGRIQLPPTLKKLEIRYCENLLCLLDDGEGSSSKKSDENTSC 232
Query: 242 SSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEV------------GNLPPSL 289
S ++ S LLE+L + C SLT I ELP+ L+ L+V LP L
Sbjct: 233 SGNN----SSLLEYLYVGICNSLTSI---GELPSALKYLQVCSCSKLKSLSSRDKLPAGL 285
Query: 290 KSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLV 349
K L + C LES+ +R +N SLE + I+ C NL+ LP GLHKL LREISI C LV
Sbjct: 286 KHLAIDSCENLESMPDRFQDNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPALV 345
Query: 350 SFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGA--LLSLEEDGLPTNLH 407
SF GLP L L I C LKA+P +HNL +L++L+I ++S E+G PT+L
Sbjct: 346 SFAAEGLP-INLRRLFIIKCDGLKAIPDHMHNLMSLEELSIYYCPDIVSFPEEGFPTSLT 404
Query: 408 SLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTT 467
L +++I + + W G H+ S+LR L I G +SFP D +G +RLP+
Sbjct: 405 YLATV-DLKICELLFNW--GMHKLSALRTLIIQG---GFSHISFPSVD--MG--VRLPSA 454
Query: 468 LTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPLI 526
L L IEDFPNLE LS S +L +L L + CPKL FP KGLPSSLLEL I CPL+
Sbjct: 455 LNRLSIEDFPNLEYLSYSGFQNLSSLERLSISDCPKLTSFPGKGLPSSLLELRIRACPLL 514
Query: 527 EEKCRKDGGQYWDLLTHIPLVAIYG 551
++ K + W + HIP + I G
Sbjct: 515 VQQI-KGRVKEWLKIRHIPYINIDG 538
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 213/569 (37%), Positives = 305/569 (53%), Gaps = 88/569 (15%)
Query: 55 LKPRIPKLEELKINNIQN-ETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEE----- 108
L+P P LE L +++ E +NE SL++L I CPKL + E
Sbjct: 837 LRP-FPSLERLYFMDMEKWENWFLSDNNEQNDMFSSLQQLFIVKCPKLLGKLPENLPSLK 895
Query: 109 ---EKDQQQQLCQLSC--RLEYLILSYCEGLV----------------KLPQSSF----- 142
K+ +Q L +S L L + C+GLV ++ + +F
Sbjct: 896 HVIVKECEQLLVTISSLPVLYKLEIEGCKGLVLNCANEFNSLNSMSVSRILEFTFLMERL 955
Query: 143 --SLSSLREIEIFKCS------SLVSFPEV-------ALPSKLKKIQIGECDALKSLPEA 187
+ ++ E++I C+ + + EV L S L+ I+I C+ +KS+P+
Sbjct: 956 VQAFKTVEELKIVSCALDETVLNDLWVNEVWLEKNPHGLSSILRLIEIRNCNIMKSIPKV 1015
Query: 188 WMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSS-- 245
M +++ LE L I C S+ ++ QLP SLK L I C N+R L ++ G C+SSS
Sbjct: 1016 LMVNSHF-LERLYICHCDSIVFVTMDQLPHSLKSLEISNCKNLRCL-LDNGT-CTSSSII 1072
Query: 246 -----RRYTSYLLEHLG---IRYCPSLTCIFSKNELPATLESLEV------------GNL 285
++ S ++ HL I +CPSLTCI ELP +++ L + G L
Sbjct: 1073 MHDDNVQHGSTIISHLEYVYIGWCPSLTCISRSGELPESVKHLFIWNCSELSCLSMKGQL 1132
Query: 286 PPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSC 345
P S++ L ++ C KLESIA RL NTSLE+I I+NCENLK LP GLH L L+EI I C
Sbjct: 1133 PKSIERLEIQSCPKLESIANRLHRNTSLESIQIWNCENLKSLPEGLHFLVNLKEIKIIGC 1192
Query: 346 GNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIG--GALLSLEEDGLP 403
NLVSFP GLP + L+ L I C++L ALP ++NL +L++L IG ++ E P
Sbjct: 1193 PNLVSFPEEGLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEIGYCPSIQYFPEINFP 1252
Query: 404 TNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLR 463
NL SL I + ++M W G ++ S LR LTI G + + PLE +LGT+
Sbjct: 1253 DNLTSLWI-NDHNACEAMFNW--GLYKLSFLRDLTIIGGN-----LFMPLE--KLGTM-- 1300
Query: 464 LPTTLTSLRIEDFPNLERLSS-SIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISG 522
LP+TLTSL ++ FP+LE LSS L +L++L + CPKL PEKGLPSSLLEL+I
Sbjct: 1301 LPSTLTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGLPSSLLELYIQD 1360
Query: 523 CPLIEEKCRKDGGQYWDLLTHIPLVAIYG 551
CP ++E+CRKD G+ W + +P V I G
Sbjct: 1361 CPFLKEQCRKDKGRDWLKIADVPYVEIDG 1389
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 206/576 (35%), Positives = 284/576 (49%), Gaps = 102/576 (17%)
Query: 4 IVISITSLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLE 63
+V+S+++LP LC + I GCK+V S+ GS S+
Sbjct: 901 MVVSVSNLPMLCVLVIEGCKRVECESSVG-FGSPYSMAFS-------------------- 939
Query: 64 ELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRL 123
KI+ N T L+ + ++ L I KL +L
Sbjct: 940 --KISEFGNATA------GLMHGVSKVEYLKIVDSEKLTTLWE----------------- 974
Query: 124 EYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKS 183
K+P+ L LRE+ I C +LVSFP PS LK IQI C LKS
Sbjct: 975 ------------KIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKSCSGLKS 1022
Query: 184 L-PEAWM-CDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTL-------- 233
L PE + N+ LE L + C S+ IA QLP++LK L I +C N++ +
Sbjct: 1023 LLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEGEGSS 1082
Query: 234 ----TVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESL--------- 280
+E I S + L++L I+ CPSLT + S +LPATL L
Sbjct: 1083 SSSGMHDEDINNRSKTH------LQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLM 1136
Query: 281 ---EVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQL 337
G LP +L+ L ++ SKL+ IAERL NTSLE I I+NC LK LP LH L +L
Sbjct: 1137 CLSSTGKLPAALQYLEIQSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKL 1196
Query: 338 REISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSL 397
R+ I C + SFP GLP + L L I +CK LKALP G+ NL++LQ L I L SL
Sbjct: 1197 RQFLIFWCQSFSSFPAAGLP-SNLRVLGIKNCKNLKALPNGMRNLTSLQKLDISHRLDSL 1255
Query: 398 --EEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG-CDDDTMMVSFPLE 454
++GLPTNL L + +++ +K M EW G + +SL L+I G C D + S+P E
Sbjct: 1256 PSPQEGLPTNLIELNMH-DLKFYKPMFEW--GLQQPTSLIKLSIHGECLD---VDSYPGE 1309
Query: 455 DKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFPEKGLPS 513
+ G ++ LP +L+ L I F NLE LS +L +L +L + C KL P++GLP
Sbjct: 1310 REN-GVMMLLPNSLSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPP 1368
Query: 514 SLLELWISGCPLIEEKCRKDGGQYWDLLTHIPLVAI 549
SL +L I CPL+ + C + GQ W + HIP V I
Sbjct: 1369 SLTQLEIRNCPLLSQHCNNEKGQEWSKIAHIPCVLI 1404
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 179/456 (39%), Positives = 245/456 (53%), Gaps = 48/456 (10%)
Query: 122 RLEYLILSYCEGLV----KLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGE 177
++EYL + E L K+P+ L LRE+ I C +LVSFP PS LK IQI
Sbjct: 298 KVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKS 357
Query: 178 CDALKSL-PEAWM-CDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIR---- 231
C LKSL PE + N+ L L + C S+ IA QLP++LK L I +C N++
Sbjct: 358 CSGLKSLLPEGTLHSRENACLVRLCVVRCDSMKSIARGQLPTTLKRLEISHCMNLQCALD 417
Query: 232 --------TLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESL--- 280
++ +E I S + L++L I+ CPSLT + S +LPATL L
Sbjct: 418 EGEGSSSSSVMHDEDINNRSKTH------LQYLDIKSCPSLTTLTSSGKLPATLTHLLLR 471
Query: 281 ---------EVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGL 331
G LP +L+ L ++ KL+ IAERL NT LE I I+NC LK LP L
Sbjct: 472 ECPKLMCLSSTGKLPAALQYLEIQSIPKLQKIAERLHQNTFLECIKIWNCHGLKSLPEDL 531
Query: 332 HKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIG 391
H L +LR+ I C + SFP GLP + L I +CK LKALP G+ NL++LQ L I
Sbjct: 532 HNLSKLRQFQIVWCTSFSSFPAAGLP-SNPRVLGIKNCKNLKALPNGMRNLTSLQKLDIS 590
Query: 392 GALLSL--EEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG-CDDDTMM 448
L SL ++GLPTNL L + +++ +K M EW G + +SL L+I G C D +
Sbjct: 591 NRLDSLPSPQEGLPTNLIELNMI-DLKFYKPMFEW--GLQQLTSLIKLSIHGECLD---V 644
Query: 449 VSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFP 507
SFP E + G ++ LP +L+ L I F NLE LS +L +L +L + C KL P
Sbjct: 645 DSFPGEREN-GAMMLLPNSLSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLP 703
Query: 508 EKGLPSSLLELWISGCPLIEEKCRKDGGQYWDLLTH 543
++GLP SL +L I CPL+ + C + GQ W + H
Sbjct: 704 KEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIAH 739
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta] | Back alignment and taxonomy information |
|---|
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 204/565 (36%), Positives = 283/565 (50%), Gaps = 98/565 (17%)
Query: 2 QRIVISITSLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDASNQVFL-AGPL-KPRI 59
+ +++SI + L ++ I GCK VV +A S+ + S L G L + +
Sbjct: 900 EELLVSIANYKQLRQLNIDGCKGVVHTAAKVEFELLESLYLSNISELTSLQTGELCRNGL 959
Query: 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEE---EKDQQQQL 116
+ +LKIN + T K+ LLQ + SL RL I SL+ EE E D+ QL
Sbjct: 960 NMVRDLKINGCEELTSSLKNEAILLQQLISLGRLEIED----NSLLVEELGKEADELLQL 1015
Query: 117 CQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIG 176
L C+LE+L L C+ L+KLP+ LSSL+E+ I +CSSLVSFP+V LP LK I+I
Sbjct: 1016 QILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELRIHECSSLVSFPDVGLPPSLKDIEIT 1075
Query: 177 ECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVE 236
EC SL Y A Q+P +L+ + I C ++R+L
Sbjct: 1076 EC--------------------------HSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDN 1109
Query: 237 EGI-QCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295
E + CSSSS LE+L I C SLT + SL VR
Sbjct: 1110 EAVGSCSSSSHN----CLEYLNIERCQSLTLL--------------------SLSDQLVR 1145
Query: 296 YCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGL---HKLHQLREISIGSCGNLVSF 351
+L + IY+CE L+ L P GL + + L I C NL S
Sbjct: 1146 ----------------ALRELDIYDCEQLEFLAPDGLFCNNTNYFLENFRIRRCQNLKSL 1189
Query: 352 P--GGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGL----PTN 405
P GG+ + L + I DC RL+ALP+ +HN ++L+ L I +GL P N
Sbjct: 1190 PRLSGGIRGSNLREIRITDCDRLEALPEDMHNFNSLEKLIID------YREGLTCSFPAN 1243
Query: 406 LHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLP 465
L SL+I ++ KS+ E G HR +SLR+L I G D D MVSFP + R+ T+L P
Sbjct: 1244 LTSLMI-WKVKSCKSLWELEWGLHRLTSLRYLWIGGEDPD--MVSFPPDMVRMETLL--P 1298
Query: 466 TTLTSLRIEDFPNLERLSSSIID-LRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCP 524
+LT L I FPNL++LSS L +L L L CPKL P++GLP SL EL I GCP
Sbjct: 1299 KSLTELSIGGFPNLKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCP 1358
Query: 525 LIEEKCRKDGGQYWDLLTHIPLVAI 549
+++E+C+ G+YW ++HIP + I
Sbjct: 1359 VLKERCQPGKGRYWHKISHIPYIDI 1383
|
Source: Malus x robusta Species: Malus x robusta Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 200/562 (35%), Positives = 285/562 (50%), Gaps = 68/562 (12%)
Query: 3 RIVISITSLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKL 62
++V + SLP L + + C + + RS D L S ++ + SN FL L + L
Sbjct: 909 KLVAPLPSLPFLRDLIVAECNEAMLRSGGD-LTSLITLRLENISNLTFLNEGLVRFLGAL 967
Query: 63 EELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCR 122
E L+I N + +S +++ ++ L I CPKL L+AE++ L C
Sbjct: 968 EVLEICNCSELKFLLQS-GVGFENLSCIRHLVIVMCPKL-VLLAEDQP--------LPCN 1017
Query: 123 LEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALK 182
LEYL ++ C L KLP SL+SLRE+ I KC L S E+ P L +++ +C+ L+
Sbjct: 1018 LEYLEINKCASLEKLPIGLQSLTSLRELSIQKCPKLCSLAEMDFPPMLISLELYDCEGLE 1077
Query: 183 SLPEAWMCDTNSS----LEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEG 238
SLP+ M + + LE L I C SL +LPS LK L I C +++L EG
Sbjct: 1078 SLPDGMMINGENRNFCLLECLKIVHCPSLICFPRGELPSKLKELEIIDCAKLQSLP--EG 1135
Query: 239 IQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCS 298
+ + LE L I CP L+ S G LP ++K L +R C
Sbjct: 1136 LILGDHTCH-----LEFLRIHRCPLLS-------------SFPRGLLPSTMKRLEIRNCK 1177
Query: 299 KLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCGNLVSFPGGGLP 357
+LESI+ L ++T+LE + I + LKI SG LH L L E+ I SC L SFP G
Sbjct: 1178 QLESIS-LLSHSTTLEYLRI---DRLKINFSGCLHSLKHLIELHIYSCSGLESFPERGFS 1233
Query: 358 CAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGA--LLSLEEDGLPTNLHSLVIRGNM 415
L L I DCK LK+LP + + ++L+DL I L+S E+GL NL S IR
Sbjct: 1234 SPNLKMLHIDDCKNLKSLPLQMQSFTSLRDLRIYDCPNLVSFAEEGLSLNLTSFWIRNCK 1293
Query: 416 EIWKSMIEWGRGFHRFSSLRHLTIDG----CDDDTMMVSFPLEDKRLGTVLRLPTTLTSL 471
+ + +W G H +SL+ I+ CD D S PL LP TLT L
Sbjct: 1294 NLKMPLYQW--GLHGLTSLQTFVINNVAPFCDHD----SLPL----------LPRTLTYL 1337
Query: 472 RIEDFPNLERLSSSIIDLRNLTE---LVLRGCPKLKYF-PEKGLPSSLLELWISGCPLIE 527
I F NLE LSS + L+NLT L + CPKL+ F P++GL ++L L I CP+IE
Sbjct: 1338 SISKFHNLESLSS--MGLQNLTSLEILEIYSCPKLQTFLPKEGLSATLSNLRIKFCPIIE 1395
Query: 528 EKCRKDGGQYWDLLTHIPLVAI 549
+CRK+ G+ W +++HIP + +
Sbjct: 1396 ARCRKNKGEDWPMISHIPRIDM 1417
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 245/481 (50%), Gaps = 42/481 (8%)
Query: 82 ELLQDICSLKRLTITSCPKLQSLVAEE---EKDQQQQLCQLS-----CRLEYLILSYCEG 133
+LLQ + +LK L I+ PKL SL + E + Q L+ + LS C+
Sbjct: 961 QLLQSLGALKVLMISDFPKLTSLWQKGTGLENFEHPQFVSLTEIGMPSTHKSSKLSGCDK 1020
Query: 134 LVKLP-QSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDT 192
L LP + L SL ++ I C +LVS PE L S L+ + + +C AL+SLP+ +
Sbjct: 1021 LDLLPIHTVHMLLSLEDLCIESCPNLVSIPEAGLLSSLRHLVLRDCKALRSLPDGM---S 1077
Query: 193 NSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYL 252
N LE L I C SL LP++LK L I YC +++L E+ + + +
Sbjct: 1078 NCPLEDLEIEECPSLECFPGRMLPATLKGLKIRYCTELKSLP-EDLMHNKNGPGTLCHF- 1135
Query: 253 LEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAER-LDNNT 311
EHL I CPSL +S G LP LK+L++ CS+L+ ++E L ++
Sbjct: 1136 -EHLEIIGCPSL-------------KSFPDGKLPTRLKTLKIWDCSQLKPLSEMMLHDDM 1181
Query: 312 SLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKR 371
SLE ++I +CE L P L L E+++ +C L FPG G P A L L IY+CK
Sbjct: 1182 SLEYLAISDCEALSSFPECLSSFKHLSELNLSNCSALKLFPGVGFPPANLRTLTIYNCKN 1241
Query: 372 LKALPKGLHNLSTLQDLTIGG--ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFH 429
LK+LP + L++LQ+LTI AL S +P +L SL I + + EW
Sbjct: 1242 LKSLPNEMRKLTSLQELTICSCPALKSFPNGDMPPHLTSLEIWDCDNLDGCLSEWN--LQ 1299
Query: 430 RFSSLRHLTI-DGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIID 488
+ LR +I GC T VSFP ++K L LPT LTS+ I PNLE LS +
Sbjct: 1300 SLTCLRDFSIAGGCFSHT--VSFP-DEKCL-----LPTNLTSVWIGRLPNLESLSMQLQS 1351
Query: 489 LRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPLIEEKCRKDGGQYWDLLTHIPLVA 548
L L EL + CPKLK P LP +L I CPL+ ++C K G YW L++HIP V
Sbjct: 1352 LAYLEELEIVDCPKLKSLPRGCLPHALGRFSIRDCPLMTQRCSKLKGVYWPLISHIPCVE 1411
Query: 549 I 549
I
Sbjct: 1412 I 1412
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450023|ref|XP_002272823.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] gi|451798994|gb|AGF69195.1| disease resistance protein At3g14460-like protein 2 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 183/579 (31%), Positives = 276/579 (47%), Gaps = 127/579 (21%)
Query: 9 TSLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKL------ 62
T+LP+L IG C ++V S + L S + + +D + V +G P + +L
Sbjct: 899 TNLPSLVHFSIGTCPQLV--SPLERLPSLSKLRVQDCNEAVLRSGLELPSLTELGIDRMV 956
Query: 63 ----------------EELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVA 106
+ L I+ TC+W++ + +Q +L +SCP+L SL
Sbjct: 957 GLTRLHEGCMQLLSGLQVLDIDRCDKLTCLWENGFDGIQ------QLQTSSCPELVSL-G 1009
Query: 107 EEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVAL 166
E+EK + L +L+ L + +C L KLP + L+ L E+EI+ C LVSFPE+
Sbjct: 1010 EKEKHE------LPSKLQSLKIRWCNNLEKLPNGLYRLTCLGELEIYDCPKLVSFPELGF 1063
Query: 167 PSKLKKIQIGECDALKSLPEAWMCDTNSS--------LEILSIHGCRSLTYIAAVQLPSS 218
P L+++ I C+ L+ LP+ M + S LE L IH C SL +LP++
Sbjct: 1064 PPMLRRLVIHSCEGLRCLPDWMMVMKDGSNNGSDVCLLEYLHIHTCPSLIGFPEGELPTT 1123
Query: 219 LKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLE 278
LK L IW C+ + +L + S++ TS L L I CPSLT F + P+TL+
Sbjct: 1124 LKELKIWRCEKLESLP-GGMMHHDSNTTTATSGGLHVLDIWKCPSLT-FFPTGKFPSTLK 1181
Query: 279 SLEVGNLPPSLKSLRVRYCSKLESIAERL--DNNTSLETISIYNCENLKILPSGLHKLHQ 336
LE+ + C++LESI++ NN+SLE +SI + LKI+P L+KL
Sbjct: 1182 KLEIWD------------CAQLESISKETFHSNNSSLEYLSIRSYPCLKIVPDCLYKL-- 1227
Query: 337 LREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLS 396
RE+ I +C N+ P LT+L IY C+ +K +P L+TL
Sbjct: 1228 -RELEINNCENVELLPHQLQNLTALTSLGIYRCENIK-MPLSRWGLATL----------- 1274
Query: 397 LEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFP---- 452
+SL+ LTI G FP
Sbjct: 1275 -----------------------------------TSLKELTIGGI--------FPRVAS 1291
Query: 453 LEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS-SIIDLRNLTELVLRGCPKLKYF-PEKG 510
D + +L PTTLT L I+DF NL+ LSS ++ L +L +L ++ CPKL+ F P +G
Sbjct: 1292 FSDGQRPPIL--PTTLTFLSIQDFQNLKSLSSLALQTLTSLEDLWIQRCPKLQSFCPREG 1349
Query: 511 LPSSLLELWISGCPLIEEKCRKDGGQYWDLLTHIPLVAI 549
LP +L L+I+ CPL++++C K GQ W + HIP V I
Sbjct: 1350 LPDTLSRLYITDCPLLKQRCSKGKGQDWPNIAHIPYVEI 1388
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495054|ref|XP_002267622.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 182/515 (35%), Positives = 255/515 (49%), Gaps = 89/515 (17%)
Query: 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSC----------PKLQSLVAEE 108
P+L EL+I E+C K +L + + L L I C P +Q L +E
Sbjct: 896 FPRLNELRI-----ESCP-KLKGDLPKHLPVLTSLVILECGQLVCQLPEAPSIQKLNLKE 949
Query: 109 -EKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALP 167
++ + + L E + + C V+LP L+SLR + I +C SL S PE+ LP
Sbjct: 950 CDEVVLRSVVHLPSINELEVSNICSIQVELPAILLKLTSLRNLVIKECQSLSSLPEMGLP 1009
Query: 168 SKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYC 227
L+ ++I +C L++LPE M N SL+ L I C SLT + + SSLK L I C
Sbjct: 1010 PMLETLRIEKCHILETLPEG-MTQNNISLQRLYIEDCDSLTSLPII---SSLKSLEIKQC 1065
Query: 228 DNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPP 287
+ ELP E+ + N P
Sbjct: 1066 RKV-----------------------------------------ELPIPEETTQ--NYYP 1082
Query: 288 SLKSLRVRY-CSKLESIAERLDNNTSLETISIYNCENLK--ILPSGLHK--LHQLREISI 342
L R+R C L S L T LET+ I +C NL+ +P GLH L L+ I I
Sbjct: 1083 WLTYFRIRRSCDSLTSFP--LAFFTKLETLYIGDCTNLESFYIPDGLHNMDLTSLQRIHI 1140
Query: 343 GSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNL-STLQDLTIG--GALLSLEE 399
+C NLVSFP GGLP + L L I +CK+LK+LP+ +H L ++L+DL I ++S E
Sbjct: 1141 WNCPNLVSFPQGGLPASNLRDLCIDNCKKLKSLPQRMHTLLTSLEDLDIYDCSEIVSFPE 1200
Query: 400 DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLG 459
GLPTNL SL I ++ +S EWG SLR L IDG + SF E
Sbjct: 1201 GGLPTNLSSLDIGSCYKLMESRKEWG--LQTLPSLRGLVIDGGTGG--LESFSEE----- 1251
Query: 460 TVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELV---LRGCPKLKYFPEKGLPSSLL 516
L LP+TL S I DFP+L+ L + + L+NLT L +R C KLK FP++GLPSSL
Sbjct: 1252 -WLLLPSTLFSFSIFDFPDLKYLDN--LGLQNLTSLEILEMRNCVKLKSFPKQGLPSSLT 1308
Query: 517 ELWISGCPLIEEKCRKDGGQYWDLLTHIPLVAIYG 551
L I GCP+++++C++D G+ W + HI + + G
Sbjct: 1309 ALQIYGCPVLKKRCQRDKGKEWRKIAHIHWIDMDG 1343
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495085|ref|XP_003634909.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 179/511 (35%), Positives = 256/511 (50%), Gaps = 76/511 (14%)
Query: 51 LAGPLKPRIPKLEELKINNIQNETC---IWKSHNELLQDICSLKRLTITSCPKLQSLVAE 107
L L +PKL L+I Q C + S L+ + + + S L SL
Sbjct: 886 LKKDLPEHLPKLTTLQIRECQQLVCCLPMAPSIRVLMLE--EYDDVMVRSAGSLTSLAYL 943
Query: 108 EEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALP 167
+ +L QL +E L +S C L ++P +L+SL+ + I C SL SFPE+ALP
Sbjct: 944 HIRKIPDELGQLHSLVE-LYVSSCPELKEIPPILHNLTSLKNLNIRYCESLASFPEMALP 1002
Query: 168 SKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP---SSLKMLTI 224
L++++I C L+SLPE M N++L+ L I C SL LP SLK L+I
Sbjct: 1003 PMLERLRIWSCPILESLPEG-MMQNNTTLQCLEICCCGSLR-----SLPRDIDSLKTLSI 1056
Query: 225 WYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGN 284
C + E +Q + Y A+L E+
Sbjct: 1057 SGCKKL-----ELALQEDMTHNHY--------------------------ASLTEFEING 1085
Query: 285 LPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHK--LHQLREISI 342
+ SL S + +KLE + L N T+LE++SI + GLH L LR + I
Sbjct: 1086 IWDSLTSFPLASFTKLEKL--HLWNCTNLESLSIRD---------GLHHVDLTSLRSLEI 1134
Query: 343 GSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNL-STLQDLTIGG--ALLSLEE 399
+C NLVSFP GGLP L L+I +CK+LK+LP+G+H L ++LQDL I + S E
Sbjct: 1135 RNCPNLVSFPRGGLPTPNLRMLDIRNCKKLKSLPQGMHTLLTSLQDLYISNCPEIDSFPE 1194
Query: 400 DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLG 459
GLPTNL SL I ++ +EWG LR L I G + + FP ++R
Sbjct: 1195 GGLPTNLSSLYIMNCNKLLACRMEWG--LQTLPFLRTLQIAGYEKE----RFP--EERF- 1245
Query: 460 TVLRLPTTLTSLRIEDFPNLERLSS-SIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLEL 518
LP+TLTSL I FPNL+ L + + L +L L + C KLK FP++GLPSSL L
Sbjct: 1246 ----LPSTLTSLGIRGFPNLKSLDNKGLQHLTSLETLEIWKCEKLKSFPKQGLPSSLSRL 1301
Query: 519 WISGCPLIEEKCRKDGGQYWDLLTHIPLVAI 549
+I CPL++++C++D G+ W ++HIP +A
Sbjct: 1302 YIERCPLLKKRCQRDKGKEWPNVSHIPCIAF 1332
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 551 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.615 | 0.238 | 0.294 | 6.3e-21 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.509 | 0.236 | 0.273 | 3e-16 | |
| TAIR|locus:2053405 | 1215 | AT2G14080 [Arabidopsis thalian | 0.509 | 0.231 | 0.254 | 1.4e-14 | |
| TAIR|locus:2094498 | 1981 | AT3G25510 [Arabidopsis thalian | 0.644 | 0.179 | 0.249 | 5.4e-14 | |
| TAIR|locus:2147992 | 1189 | AT5G11250 [Arabidopsis thalian | 0.488 | 0.226 | 0.258 | 1.6e-12 | |
| TAIR|locus:2129236 | 1301 | SNC1 "SUPPRESSOR OF NPR1-1, CO | 0.658 | 0.279 | 0.266 | 7.9e-12 | |
| TAIR|locus:2098145 | 1240 | AT3G44630 [Arabidopsis thalian | 0.402 | 0.179 | 0.273 | 3e-09 | |
| TAIR|locus:2028681 | 1161 | AT1G31540 [Arabidopsis thalian | 0.453 | 0.215 | 0.278 | 1.9e-11 | |
| TAIR|locus:2098110 | 1219 | AT3G44670 [Arabidopsis thalian | 0.368 | 0.166 | 0.303 | 2e-11 | |
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.736 | 0.313 | 0.248 | 2.2e-11 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 268 (99.4 bits), Expect = 6.3e-21, Sum P(3) = 6.3e-21
Identities = 110/373 (29%), Positives = 182/373 (48%)
Query: 191 DTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTL--TVEEGIQCXXXXXXX 248
D + +E L + ++++ ++LP +L+ L I CD + +L + E
Sbjct: 1070 DDETDMEYLKV---TDISHL--MELPQNLQSLHIDSCDGLTSLPENLTESYPNLHELLII 1124
Query: 249 XXXXXEHLGIRYCPS-LTCIFSKN--ELPATLESLEVGNLPPSLKSLRV-RYCSKLESIA 304
E + P+ L ++ ++ +L T ESL+ L+ L + CS L +
Sbjct: 1125 ACHSLESFPGSHPPTTLKTLYIRDCKKLNFT-ESLQPTRSYSQLEYLFIGSSCSNLVNFP 1183
Query: 305 ERLDNNTSLETISIYNCENLKI--LPSGLHKLH-QLREISIGSCGNLVSFPGGGLPCAKL 361
L L ++SI +CE+ K + +GL L + I C NL +FP GGLP KL
Sbjct: 1184 --LSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKL 1241
Query: 362 TALEIYDCKRLKALPKGLHNLSTLQDLTIGGA--LLSLEEDGLPTNLHSLVIRGNMEIWK 419
+++ + +CK+L+ALP+ L L++L L I + ++ G P+NL +L I +
Sbjct: 1242 SSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCI-SLCDKLT 1300
Query: 420 SMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNL 479
IEWG +LR+L IDG ++D + SFP E G LP ++ SLRI F NL
Sbjct: 1301 PRIEWG--LRDLENLRNLEIDGGNED--IESFPEE----GL---LPKSVFSLRISRFENL 1349
Query: 480 ERLS-SSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPLIEEKCRKDGGQYW 538
+ L+ D + + + + GC KL+ ++ LP L L IS C L+ E + +++
Sbjct: 1350 KTLNRKGFHDTKAIETMEISGCDKLQISIDEDLPP-LSCLRISSCSLLTETFAEVETEFF 1408
Query: 539 DLLTHIPLVAIYG 551
+L +IP V I G
Sbjct: 1409 KVL-NIPYVEIDG 1420
|
|
| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 237 (88.5 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 85/311 (27%), Positives = 145/311 (46%)
Query: 123 LEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDAL 181
L+ L L C LV+LP S + ++L E+++ CSSLV P + + LKK+ + C +L
Sbjct: 682 LQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSL 741
Query: 182 KSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSL-KMLTIW--YCDNIRTLTVEEG 238
LP ++ +SL+ L++ GC SL +++PSS+ ++ + Y D +L
Sbjct: 742 VKLPSSF--GNVTSLKELNLSGCSSL-----LEIPSSIGNIVNLKKVYADGCSSL----- 789
Query: 239 IQCXXXXXXXXXXXXEHL----GIRYCPSLTCIFSKNE---LPATLESLE---VGNLPPS 288
+Q HL + CPS ++ E L L ++ +GN+ +
Sbjct: 790 VQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVI-N 848
Query: 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNL 348
L+SL + CS L + ++N T+L+T+ + C NL LPS + + L+ + + C +L
Sbjct: 849 LQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSL 908
Query: 349 VSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG--ALLSLEEDGLPTNL 406
P L +L + C L LP + +S L L + +LL L P
Sbjct: 909 KELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVP 968
Query: 407 HSLVI-RGNME 416
SL++ G+ E
Sbjct: 969 DSLILDAGDCE 979
|
|
| TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 78/307 (25%), Positives = 138/307 (44%)
Query: 134 LVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTN 193
L KL + L +L+ +++F +L P+++ + L+ + + C +L LP +
Sbjct: 663 LEKLWEEIQPLRNLKRMDLFSSKNLKELPDLSSATNLEVLNLNGCSSLVELP--FSIGNA 720
Query: 194 SSLEILSIHGCRSLTYI-AAVQLPSSLKMLTIWYCDNIRTLTVEEG---------IQCXX 243
+ L L + GC SL + +++ +L+ + +C+N+ L G + C
Sbjct: 721 TKLLKLELSGCSSLLELPSSIGNAINLQTIDFSHCENLVELPSSIGNATNLKELDLSCCS 780
Query: 244 XXXXXXXXXXEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESI 303
++ L C S ELP++ +GN +LK L + CS L +
Sbjct: 781 SLKELPSSIGNCTNLKKL-HLICCSSLKELPSS-----IGNCT-NLKELHLTCCSSLIKL 833
Query: 304 AERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG--GGLPCAKL 361
+ N +LE + + CE+L LPS + K L+ +++G LV P G L KL
Sbjct: 834 PSSIGNAINLEKLILAGCESLVELPSFIGKATNLKILNLGYLSCLVELPSFIGNLH--KL 891
Query: 362 TALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNM--EIWK 419
+ L + CK+L+ LP + NL L +L + +L + TN+ L +RG E+
Sbjct: 892 SELRLRGCKKLQVLPTNI-NLEFLNELDLTDCILLKTFPVISTNIKRLHLRGTQIEEVPS 950
Query: 420 SMIEWGR 426
S+ W R
Sbjct: 951 SLRSWPR 957
|
|
| TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 99/397 (24%), Positives = 164/397 (41%)
Query: 123 LEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALP-SKLKKIQIGECDAL 181
LE LIL YC LVK+P L L+ + + C+S++ P + L+ + + EC +L
Sbjct: 689 LEELILKYCVSLVKVPSCVGKLGKLQVLCLHGCTSILELPSFTKNVTGLQSLDLNECSSL 748
Query: 182 KSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQC 241
LP + +L+ L + GC L ++LP S+ T N++ +
Sbjct: 749 VELPSS--IGNAINLQNLDL-GCLRL-----LKLPLSIVKFT-----NLKKFILNGCSSL 795
Query: 242 XXXXXXXXXXXXEHLGIRYCPSLTCIFSKNELPATLESLEVGN------LPP------SL 289
++L + C SL + S L++L++ N LP +L
Sbjct: 796 VELPFMGNATNLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLVKLPSFIGNATNL 855
Query: 290 KSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLV 349
+ L +R CS L I + + T+L + + C +L LPS + + +L+ +++ +C NLV
Sbjct: 856 EILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVELPSSVGNISELQVLNLHNCSNLV 915
Query: 350 SFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSL 409
P L L++ C L LP + N++ LQ+L + ++ NLH L
Sbjct: 916 KLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSNLVKLPSSIGNLHLL 975
Query: 410 VIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLT 469
K +E SL L + C + SFP + T +
Sbjct: 976 FTLSLARCQK--LEALPSNINLKSLERLDLTDC---SQFKSFP----------EISTNIE 1020
Query: 470 SLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYF 506
L + D +E + SSI LT L + KLK F
Sbjct: 1021 CLYL-DGTAVEEVPSSIKSWSRLTVLHMSYFEKLKEF 1056
|
|
| TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 77/298 (25%), Positives = 133/298 (44%)
Query: 144 LSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNS-SLEILSIH 202
L +LR++++ +L P+++ L+K+ + C +L LP C N+ +LE L ++
Sbjct: 675 LHNLRQMDLSYSVNLKELPDLSTAINLRKLILSNCSSLIKLPS---CIGNAINLEDLDLN 731
Query: 203 GCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCXXXXXXXXXXXXEHLGIRYCP 262
GC SL + + +L+ L + YC N+ L G L + YC
Sbjct: 732 GCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIG----------NAINLRELDLYYCS 781
Query: 263 SLTCIFSK--NELPATLESLE-VGNL---PPS------LKSLRVRYCSKLESIAERLDNN 310
SL + S N + + L NL P S L+ L +R C+KL + + N
Sbjct: 782 SLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELPSSIGNA 841
Query: 311 TSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCK 370
+L+ + + +C +L LPS + L +++ +C NLV P KL L + C
Sbjct: 842 INLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCS 901
Query: 371 RLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNM--EIWKSMIEWGR 426
+L+ LP + NL +L L + + + TN+ +L + G E+ S+ W R
Sbjct: 902 KLEDLPINI-NLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPR 958
|
|
| TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 116/436 (26%), Positives = 190/436 (43%)
Query: 126 LILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLP 185
LI+ Y + L KL + + L SL+E+ + ++L P+++L L+++ + C +L +LP
Sbjct: 595 LIMKYSK-LEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVTLP 653
Query: 186 EAWMCDTNSSLEILSIHGCRSL-TYIAAVQLPSSLKMLTIWYCDNIRTL-TVEEGIQCXX 243
+ + L L + C+ L ++ + L SL+ L + C N+R ++ G
Sbjct: 654 SS--IQNATKLIYLDMSDCKKLESFPTDLNL-ESLEYLNLTGCPNLRNFPAIKMGCSDVD 710
Query: 244 XXXXXXXXXXEHLGIRYCPSLTCIFSKNELPATLESLEVGNL-------PPSLKSLRVR- 295
E C ++KN LPA L+ L+ P L L VR
Sbjct: 711 FPEGRNEIVVED----------CFWNKN-LPAGLDYLDCLTRCMPCEFRPEQLAFLNVRG 759
Query: 296 YCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG-- 353
Y K E + E + + SLE + + ENL +P L K +L + + +C +LV+ P
Sbjct: 760 Y--KHEKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTI 816
Query: 354 GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGA-------LLS-------LEE 399
G L +L LE+ +C L+ LP + NLS+L+ L + G L+S LE
Sbjct: 817 GNLH--RLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISTNIVWLYLEN 873
Query: 400 ---DGLPT---NLHSLVIRGNMEIWKSM-IEWGRGFHRFSSLRHLTIDGCDDDTMMVSFP 452
+ +P+ NLH LV +E+ K +E SSL L + GC + SFP
Sbjct: 874 TAIEEIPSTIGNLHRLV---RLEMKKCTGLEVLPTDVNLSSLETLDLSGCSS---LRSFP 927
Query: 453 LEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-GL 511
L + + + L + IE+ P+L + + NL L L C L P G
Sbjct: 928 LISESIKWLY-----LENTAIEEIPDLSKAT-------NLKNLKLNNCKSLVTLPTTIGN 975
Query: 512 PSSLLELWISGCPLIE 527
L+ + C +E
Sbjct: 976 LQKLVSFEMKECTGLE 991
|
|
| TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 67/245 (27%), Positives = 113/245 (46%)
Query: 286 PPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSC 345
P L L +R CSKL + E +L+ + + + +LK LPS + KL L+ + + C
Sbjct: 715 PEFLVELDMR-CSKLRKLWEGTKQLRNLKWMDLSDSRDLKELPSSIEKLTSLQILDLRDC 773
Query: 346 GNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG--ALLSLEED-GL 402
+LV P + L L + +C R+ LP + N++ L L + +L+ L G
Sbjct: 774 SSLVKLPPS-INANNLQGLSLTNCSRVVKLP-AIENVTNLHQLKLQNCSSLIELPLSIGT 831
Query: 403 PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVL 462
NL L IRG S+++ ++L+ + C + +V P +G +
Sbjct: 832 ANNLWKLDIRG----CSSLVKLPSSIGDMTNLKEFDLSNCSN---LVELP---SSIGNLQ 881
Query: 463 RLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISG 522
+L LR+ LE L ++I +L +L L L C +LK FPE + + + EL + G
Sbjct: 882 KL----FMLRMRGCSKLETLPTNI-NLISLRILDLTDCSQLKSFPE--ISTHISELRLKG 934
Query: 523 CPLIE 527
+ E
Sbjct: 935 TAIKE 939
|
|
| TAIR|locus:2028681 AT1G31540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 74/266 (27%), Positives = 119/266 (44%)
Query: 260 YCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIY 319
Y P + ++ P + + G P +L L ++Y SKL + E + T L+ + ++
Sbjct: 580 YLPRTLKLLCWSKFP--MRCMPFGFRPENLVKLEMQY-SKLHKLWEGVAPLTCLKEMDLH 636
Query: 320 NCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGL 379
NLK++P L + L +++ C +LV P KL L++ +CK LK LP G
Sbjct: 637 GSSNLKVIPD-LSEATNLEILNLKFCESLVELPSSIRNLNKLLNLDMLNCKSLKILPTGF 695
Query: 380 HNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTI 439
NL +L L + TN+ L N+ + ++ ++ H +L I
Sbjct: 696 -NLKSLDRLNLYHCSKLKTFPKFSTNISVL----NLNL-TNIEDFPSNLH-LENLVEFRI 748
Query: 440 DGCDDDTMMVSFPLEDKRLGTVLR--LPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVL 497
+ D E+K L L L TLTSL +E+ P+L L+SS +L L +L++
Sbjct: 749 SKEESDEKQWE---EEKPLTPFLAMMLSPTLTSLHLENLPSLVELTSSFQNLNQLKDLII 805
Query: 498 RGCPKLKYFPEKGLPSSLLELWISGC 523
C L+ P SL L SGC
Sbjct: 806 INCINLETLPTGINLQSLDYLCFSGC 831
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| TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 68/224 (30%), Positives = 105/224 (46%)
Query: 289 LKSLRVRYCSKLESIAE--RLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCG 346
L++L+ S E + E L T+LE + + +C +L LPS + KL L+ + + C
Sbjct: 715 LRNLKWMDLSNSEDLKELPNLSTATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCS 774
Query: 347 NLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLP--T 404
+LV P G KL L + +C L+ LP + N + LQ L++ +E + T
Sbjct: 775 SLVELPSFG-NATKLEELYLENCSSLEKLPPSI-NANNLQQLSLINCSRVVELPAIENAT 832
Query: 405 NLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRL 464
NL L + GN S+IE ++L+ L I GC +V P +G +
Sbjct: 833 NLQKLDL-GNCS---SLIELPLSIGTATNLKELNISGCSS---LVKLP---SSIGDI--- 879
Query: 465 PTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE 508
T L + + NL L +I +L+ L L L GC +LK FPE
Sbjct: 880 -TNLKEFDLSNCSNLVELPINI-NLKFLDTLNLAGCSQLKSFPE 921
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| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 111/446 (24%), Positives = 179/446 (40%)
Query: 73 ETCIWKSHNELLQD-ICSLKRLTITSCPKLQSLVAEEEKDXXXXXXXXXXRLEYLILSYC 131
E C+ S+ E L D I L+ L + + LV E D LE L LSYC
Sbjct: 606 ELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLV--EVPDLSKAT-----NLEELNLSYC 658
Query: 132 EGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPE-AWMC 190
+ LV++ S +L L + C L P + L+ + + C +LK PE +W
Sbjct: 659 QSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISW-- 716
Query: 191 DTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEG-IQCXXXXXXXX 249
N+ LS L +++ S L L + C +RTL G +
Sbjct: 717 --NTRRLYLSSTKIEELP--SSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDG 772
Query: 250 XXXXEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDN 309
E+L +LT + + E+ L E + S++ LR+ S +E I R+ N
Sbjct: 773 CRRLENLPDTL-QNLTSLETL-EVSGCLNVNEFPRVSTSIEVLRISETS-IEEIPARICN 829
Query: 310 NTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLP-CAKLTALEIYD 368
+ L ++ I + L LP + +L L ++ + C L SFP L C ++ L +D
Sbjct: 830 LSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLESFP---LEICQTMSCLRWFD 886
Query: 369 CKR--LKALPKGLHNLSTLQDLTIGGALLSLEEDGLP--TNLHSLVIRGNMEIWKSMIE- 423
R +K LP+ + NL L+ L ++ + T L L I + + ++
Sbjct: 887 LDRTSIKELPENIGNLVALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFFTPEGLLHS 946
Query: 424 WGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS 483
RF LR L++ + M P L +L L + N E +
Sbjct: 947 LCPPLSRFDDLRALSLSNMN----MTEIPNSIGNLWNLLELDLSGN--------NFEFIP 994
Query: 484 SSIIDLRNLTELVLRGCPKLKYFPEK 509
+SI L L L L C +L+ P++
Sbjct: 995 ASIKRLTRLNRLNLNNCQRLQALPDE 1020
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00660113 | hypothetical protein (552 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 551 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 5e-11 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-09 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-06 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 2e-05 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 6e-04 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 5e-11
Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 39/237 (16%)
Query: 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNL 348
L+++ +R L+ I + L T+LET+ + +C +L LPS + L++L ++ + C NL
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694
Query: 349 VSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLH- 407
P G+ L L + C RLK+ P N+S L + ++EE P+NL
Sbjct: 695 EILP-TGINLKSLYRLNLSGCSRLKSFPDISTNISW---LDLDET--AIEE--FPSNLRL 746
Query: 408 -SLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPT 466
+L E+ KS W R ++ LT PL + L
Sbjct: 747 ENLDELILCEM-KSEKLWER-------VQPLT-------------PL-------MTMLSP 778
Query: 467 TLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGC 523
+LT L + D P+L L SSI +L L L + C L+ P SL L +SGC
Sbjct: 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 66/278 (23%), Positives = 112/278 (40%), Gaps = 61/278 (21%)
Query: 132 EGLVKL--PQSSF--------SLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDAL 181
E LVKL S SL+ LR I++ +L P++++ + L+ +++ +C +L
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670
Query: 182 KSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQC 241
LP +++Q + L+ L + C+N+ L GI
Sbjct: 671 VELP-------------------------SSIQYLNKLEDLDMSRCENLEILPT--GINL 703
Query: 242 SSSSRRYTSYLLEHLGIRYCPSLTCI--FSKNELPATLESLEVGNLPPSLKS---LRVRY 296
S L L + C L S N L+ + P +L+ +
Sbjct: 704 KS---------LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELIL 754
Query: 297 CS-KLESIAERLDNNT--------SLETISIYNCENLKILPSGLHKLHQLREISIGSCGN 347
C K E + ER+ T SL + + + +L LPS + LH+L + I +C N
Sbjct: 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814
Query: 348 LVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTL 385
L + P G+ L +L++ C RL+ P N+S L
Sbjct: 815 LETLP-TGINLESLESLDLSGCSRLRTFPDISTNISDL 851
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 69/304 (22%)
Query: 76 IWKSHNELLQDI------CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILS 129
+ S N L++I +L+ L ++ C L L + Q +LE L +S
Sbjct: 641 LRGSKN--LKEIPDLSMATNLETLKLSDCSSLVELPSS---------IQYLNKLEDLDMS 689
Query: 130 YCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWM 189
CE L LP + +L SL + + CS L SFP++ + + + + E A++ P
Sbjct: 690 RCENLEILP-TGINLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDET-AIEEFPSNLR 745
Query: 190 CDTNSSLEILSIHGCRSLTYIAAVQLPSSL-KM----LTIWYCDNIRTLTVEEGIQCSSS 244
+ +L+ L + +S VQ + L M LT + +I +L ++ SS
Sbjct: 746 LE---NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL-----VELPSS 797
Query: 245 SRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKL---- 300
+ LEHL I C LE+L G SL+SL + CS+L
Sbjct: 798 IQNLHK--LEHLEIENC-------------INLETLPTGINLESLESLDLSGCSRLRTFP 842
Query: 301 ----------------ESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGS 344
E + ++ ++L + + C NL+ + + KL L +
Sbjct: 843 DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902
Query: 345 CGNL 348
CG L
Sbjct: 903 CGAL 906
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 40/166 (24%)
Query: 198 ILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLG 257
L I C + + LP+ L +TI C+N+ TL LE L
Sbjct: 56 RLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLP------------GSIPEGLEKLT 100
Query: 258 IRYCPSLTCIFSKNELPATLESLEVG--------NLPPSLKSLRVRYCSKLESIAERLDN 309
+ +CP ++ LP ++ SLE+ N+P L SL + + R+DN
Sbjct: 101 VCHCPEIS------GLPESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQA--RIDN 152
Query: 310 --NTSLETISIYNCENLKI---LPSGLH--KLHQLREI--SIGSCG 346
+ SL+T+S+ C N+ + LP L LH ++ +I G
Sbjct: 153 LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTWNISFEG 198
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Length = 426 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 38/239 (15%)
Query: 273 LPATLESLEVGNLPPSLKSLRVRYCSKL--------ESIAERLD--NNTSLETISIYNCE 322
L E + L S +CS I +++ + I + E
Sbjct: 6 LSTENEKNKEAMLSTSQLEPDGTFCSNSTETSAEIRSEITPQIEEARASGRLYIKDCDIE 65
Query: 323 NLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNL 382
+L +LP ++L EI+I +C NL + P G +P L L + C + LP+ + +L
Sbjct: 66 SLPVLP------NELTEITIENCNNLTTLP-GSIP-EGLEKLTVCHCPEISGLPESVRSL 117
Query: 383 STLQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442
G A S++ +P L SL I ++ I+ SL+ L++ GC
Sbjct: 118 EIK-----GSATDSIK--NVPNGLTSLSINSYNPENQARIDNLIS----PSLKTLSLTGC 166
Query: 443 DDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFP--------NLERLSSSIIDLRNLT 493
+ + P + + + TT ++ E FP N LS + +N+T
Sbjct: 167 SNIILPEKLPESLQSITLHIEQKTTW-NISFEGFPDGLDIDLQNSVLLSPDVFKDKNIT 224
|
Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.9 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.88 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.87 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.84 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.84 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.83 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.83 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.83 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.57 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.53 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.43 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.41 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.4 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.34 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.33 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.19 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.1 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.04 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.04 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.01 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.0 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.99 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.72 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.67 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.62 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.57 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.53 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.51 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.49 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.45 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.43 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.37 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.3 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.26 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.19 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.14 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.06 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.04 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.01 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.92 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.88 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.86 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.86 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.82 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.68 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.51 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.38 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.31 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.27 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.19 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.12 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.12 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.81 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.13 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.01 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.87 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.71 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 95.7 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.45 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.21 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 95.09 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.05 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.87 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.82 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.08 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 93.91 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 92.22 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 91.62 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 91.07 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 80.85 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=305.00 Aligned_cols=462 Identities=17% Similarity=0.120 Sum_probs=257.4
Q ss_pred hhhccCCCCcceEEeCCCCCc-cccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhccc
Q 008856 5 VISITSLPALCKMEIGGCKKV-VWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKS 79 (551)
Q Consensus 5 ~~~~~~~~~L~~L~l~~~~~~-~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 79 (551)
..+|..+++|++|++++|... .++. .+.+|++|++.++.... .+|. ..+++|++|+++++ .+...
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~---~~p~---~~l~~L~~L~Ls~n-~~~~~--- 155 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG---SIPR---GSIPNLETLDLSNN-MLSGE--- 155 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc---ccCc---cccCCCCEEECcCC-ccccc---
Confidence 456888999999999998754 2433 36779999998876543 2332 24788888888884 44422
Q ss_pred CcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCc
Q 008856 80 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLV 159 (551)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 159 (551)
....+..+++|++|++++|.-...+|.. +..+ ++|++|++++|.....+|..+..+++|++|+++++....
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~-----~~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNS-----LTNL----TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChh-----hhhC----cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 3344678888888888886422334432 6666 888888888876555677778888888888888764333
Q ss_pred ccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc-cCCCCccEEEEecCCCcccccccc
Q 008856 160 SFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPSSLKMLTIWYCDNIRTLTVEE 237 (551)
Q Consensus 160 ~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~ 237 (551)
.+|. ++.+++|++|++++|.....++..+ ..+++|+.|++++|.....++.. ..+++|+.|++++|.-...+ |.
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~ 302 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI--PE 302 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhH--hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC--Ch
Confidence 4444 5667888888888765443444432 22367778877775433233322 33567777777765333233 44
Q ss_pred cccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEE
Q 008856 238 GIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETIS 317 (551)
Q Consensus 238 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 317 (551)
.+.. +++|+.|+++++..... .|..+..+. +|+.|++++|.....++..++.+++|+.|+
T Consensus 303 ~~~~--------l~~L~~L~l~~n~~~~~------~~~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 303 LVIQ--------LQNLEILHLFSNNFTGK------IPVALTSLP------RLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred hHcC--------CCCCcEEECCCCccCCc------CChhHhcCC------CCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 4444 45566666665332111 111111111 244444444443333333444444444444
Q ss_pred EecC------------------------CCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccc
Q 008856 318 IYNC------------------------ENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLK 373 (551)
Q Consensus 318 l~~~------------------------~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 373 (551)
++++ .....+|..+..+++|+.|++++|.....+|.....+++|+.|++++|....
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 4442 2222233334444455555555443222333333333455555555543333
Q ss_pred ccccccccCCcccceeccc-ccc-ccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccc
Q 008856 374 ALPKGLHNLSTLQDLTIGG-ALL-SLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSF 451 (551)
Q Consensus 374 ~~~~~~~~l~~L~~L~l~~-~l~-~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 451 (551)
.++..+..+++|+.|++++ .+. .+|.....++|+.|++++|+... ..+.. +..+++|+.|++++|. . ...+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~-~~~~~---~~~l~~L~~L~Ls~N~-l--~~~~ 515 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG-AVPRK---LGSLSELMQLKLSENK-L--SGEI 515 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCC-ccChh---hhhhhccCEEECcCCc-c--eeeC
Confidence 3333444555555555555 221 23333334566666666665332 22222 4566677777777762 2 2244
Q ss_pred ccccccccccccccccccccccccCCChh-hhhhhccCCCCcCEEEEcCCCCccccCCC-CCccccceEeecCCc
Q 008856 452 PLEDKRLGTVLRLPTTLTSLRIEDFPNLE-RLSSSIIDLRNLTELVLRGCPKLKYFPEK-GLPSSLLELWISGCP 524 (551)
Q Consensus 452 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 524 (551)
|+.. ..+++|++|++++ +.+. .+|..+..+++|++|++++|+....+|.. ..+++|+.+++++|+
T Consensus 516 p~~~-------~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 516 PDEL-------SSCKKLVSLDLSH-NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred ChHH-------cCccCCCEEECCC-CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 4433 2456777777777 3443 45566667777777777776544455542 224567777777775
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=304.46 Aligned_cols=456 Identities=15% Similarity=0.111 Sum_probs=299.9
Q ss_pred CCcceEEeCCCCCcc-cc---ccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVV-WR---SATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~-~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
..++.|+++++.... ++ ..+++|+.|++.++.... .+|..+...+++|++|++++++-...+ + ...+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~---~ip~~~~~~l~~L~~L~Ls~n~l~~~~---p---~~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG---PIPDDIFTTSSSLRYLNLSNNNFTGSI---P---RGSI 139 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC---cCChHHhccCCCCCEEECcCCcccccc---C---cccc
Confidence 478999999876433 22 237889999999886432 466666667899999999995432222 3 2568
Q ss_pred CCccEEeecCCcccc-ccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-CC
Q 008856 88 CSLKRLTITSCPKLQ-SLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE-VA 165 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~-~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~ 165 (551)
++|++|++++|. +. .++.. +..+ ++|++|++++|.....+|..+.++++|++|++++|.....+|. ++
T Consensus 140 ~~L~~L~Ls~n~-~~~~~p~~-----~~~l----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 140 PNLETLDLSNNM-LSGEIPND-----IGSF----SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred CCCCEEECcCCc-ccccCChH-----HhcC----CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence 999999999975 54 34433 6667 9999999999866668888999999999999999754445554 67
Q ss_pred CCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc-cCCCCccEEEEecCCCcccccccccccccCC
Q 008856 166 LPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSS 244 (551)
Q Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 244 (551)
.+++|++|++++|.....++..+ ..+++|++|++++|.....++.. ..+++|+.|+++++.-...+ |..+..
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~--- 282 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEI--GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFS--- 282 (968)
T ss_pred CcCCccEEECcCCccCCcCChhH--hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC--chhHhh---
Confidence 79999999999987555566542 23489999999997543344433 55689999999986443344 666666
Q ss_pred CcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCc
Q 008856 245 SRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENL 324 (551)
Q Consensus 245 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 324 (551)
+++|++|++++|..... +|.++.++. +|+.|++++|......+..+..+++|+.|++++|...
T Consensus 283 -----l~~L~~L~Ls~n~l~~~------~p~~~~~l~------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 283 -----LQKLISLDLSDNSLSGE------IPELVIQLQ------NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred -----ccCcCEEECcCCeeccC------CChhHcCCC------CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 67899999998642222 333333333 6999999999877778888999999999999996544
Q ss_pred ccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-ccc-ccccC-C
Q 008856 325 KILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALL-SLEED-G 401 (551)
Q Consensus 325 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~-~l~~~-~ 401 (551)
..+|..+..+++|+.|++++|.....+|......++|+.|++++|.....+|..+..+++|+.|++++ .+. .+|.. .
T Consensus 346 ~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 56788888899999999998654334444333334555555555443334444455555555555544 222 12211 2
Q ss_pred ------------------------cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccc
Q 008856 402 ------------------------LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKR 457 (551)
Q Consensus 402 ------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 457 (551)
.+++|++|++++|...... +. ....++|+.|++++|. . ...+|...
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-p~----~~~~~~L~~L~ls~n~-l--~~~~~~~~-- 495 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL-PD----SFGSKRLENLDLSRNQ-F--SGAVPRKL-- 495 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec-Cc----ccccccceEEECcCCc-c--CCccChhh--
Confidence 2445555555555432211 11 1123455666666552 1 11223222
Q ss_pred ccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC-CCccccceEeecCCch
Q 008856 458 LGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-GLPSSLLELWISGCPL 525 (551)
Q Consensus 458 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~ 525 (551)
..+++|+.|+++++.-...+|..+.++++|++|++++|.....+|.. .-+++|+.|++++|..
T Consensus 496 -----~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 496 -----GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred -----hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 24567777777774333356666777788888888875543344432 2256788888888764
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=237.87 Aligned_cols=312 Identities=22% Similarity=0.365 Sum_probs=157.4
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCC
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPS 168 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 168 (551)
+|+.|.+.++ .++.+|.. + .+.+|+.|++.++ .+..++.++..+++|+.|+++++..++.+|.+..++
T Consensus 590 ~Lr~L~~~~~-~l~~lP~~-----f-----~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~ 657 (1153)
T PLN03210 590 KLRLLRWDKY-PLRCMPSN-----F-----RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT 657 (1153)
T ss_pred ccEEEEecCC-CCCCCCCc-----C-----CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCC
Confidence 4666666664 35555543 1 1256666666663 455566666666666666666666666666666666
Q ss_pred CCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCccc
Q 008856 169 KLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRY 248 (551)
Q Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 248 (551)
+|+.|++++|..+..++..+ ..+++|+.|++++|..++.+|....+++|+.|++++|..+..+ |....
T Consensus 658 ~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~--p~~~~-------- 725 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSF--PDIST-------- 725 (1153)
T ss_pred cccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccc--ccccC--------
Confidence 66666666666666655542 1225566666666666666555444556666666665555444 33211
Q ss_pred ccCCccEEEEecCCCCcccccCC-CchhhhhhccccCCCCCccEEEeccCcchhh-------hHhhhcCCCCCcEEEEec
Q 008856 249 TSYLLEHLGIRYCPSLTCIFSKN-ELPATLESLEVGNLPPSLKSLRVRYCSKLES-------IAERLDNNTSLETISIYN 320 (551)
Q Consensus 249 ~~~~L~~L~l~~c~~l~~~~~~~-~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~l~~L~~L~l~~ 320 (551)
+|+.|+++++ .+.. +|.. .++ +|++|++.++..... .+.....+++|+.|++++
T Consensus 726 ---nL~~L~L~~n-~i~~-lP~~~~l~-------------~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 726 ---NISWLDLDET-AIEE-FPSNLRLE-------------NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred ---CcCeeecCCC-cccc-cccccccc-------------ccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 3555555552 2333 2211 111 244444443221000 000111223444555544
Q ss_pred CCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccccccccccC
Q 008856 321 CENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEED 400 (551)
Q Consensus 321 ~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~l~~l~~~ 400 (551)
|+.+..+|..+..+++|+.|++++|..++.+|... .+++|+.|++++|..+..+|.
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----------------------- 843 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----------------------- 843 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----------------------
Confidence 44444444444444455555555444444444322 223444444444444333322
Q ss_pred CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChh
Q 008856 401 GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLE 480 (551)
Q Consensus 401 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 480 (551)
.+++|++|++++|... . .|.+ +..+++|+.|++++| .. +..+|... ..+++|+.+++++|.+++
T Consensus 844 -~~~nL~~L~Ls~n~i~-~-iP~s---i~~l~~L~~L~L~~C-~~--L~~l~~~~-------~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 844 -ISTNISDLNLSRTGIE-E-VPWW---IEKFSNLSFLDMNGC-NN--LQRVSLNI-------SKLKHLETVDFSDCGALT 907 (1153)
T ss_pred -cccccCEeECCCCCCc-c-ChHH---HhcCCCCCEEECCCC-CC--cCccCccc-------ccccCCCeeecCCCcccc
Confidence 1235555555555422 1 1222 456667777777776 34 55555533 234667777777777666
Q ss_pred hh
Q 008856 481 RL 482 (551)
Q Consensus 481 ~~ 482 (551)
.+
T Consensus 908 ~~ 909 (1153)
T PLN03210 908 EA 909 (1153)
T ss_pred cc
Confidence 54
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=234.94 Aligned_cols=342 Identities=20% Similarity=0.318 Sum_probs=210.3
Q ss_pred hhccCCCCcceEEeCCCCC-------cccccc---c-cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCch
Q 008856 6 ISITSLPALCKMEIGGCKK-------VVWRSA---T-DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNET 74 (551)
Q Consensus 6 ~~~~~~~~L~~L~l~~~~~-------~~~~~~---~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 74 (551)
.+|..+++|+.|.+..... ..++.+ + .+|+.|.+.+++... +|..+ .+.+|++|++.+ +.++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~----lP~~f--~~~~L~~L~L~~-s~l~ 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC----MPSNF--RPENLVKLQMQG-SKLE 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC----CCCcC--CccCCcEEECcC-cccc
Confidence 3677888888888765321 113332 2 347777777665432 44433 246777777777 4567
Q ss_pred hhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEcc
Q 008856 75 CIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFK 154 (551)
Q Consensus 75 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~ 154 (551)
.+|.+ +..+++|+.|+++++..+..+|. +..+ ++|++|++++|..+..+|..+..+++|+.|++++
T Consensus 625 ~L~~~----~~~l~~Lk~L~Ls~~~~l~~ip~------ls~l----~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 625 KLWDG----VHSLTGLRNIDLRGSKNLKEIPD------LSMA----TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred ccccc----cccCCCCCEEECCCCCCcCcCCc------cccC----CcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 66432 35677778888777666666654 3333 7777888877777777777777777777888777
Q ss_pred CCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCccccc
Q 008856 155 CSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLT 234 (551)
Q Consensus 155 c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 234 (551)
|+.++.+|....+++|+.|++++|..+..++.. ..+|+.|+++++ .++.+|....+++|+.|.+.++... .+
T Consensus 691 c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n-~i~~lP~~~~l~~L~~L~l~~~~~~-~l- 762 (1153)
T PLN03210 691 CENLEILPTGINLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDET-AIEEFPSNLRLENLDELILCEMKSE-KL- 762 (1153)
T ss_pred CCCcCccCCcCCCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCC-ccccccccccccccccccccccchh-hc-
Confidence 777777776556777777777777666555432 145667776663 3445554333455555555443211 11
Q ss_pred ccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCc
Q 008856 235 VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLE 314 (551)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 314 (551)
+..+.. ++. .....+++|+.|++++|.....++..++++++|+
T Consensus 763 -~~~~~~-------------------------------l~~-----~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 763 -WERVQP-------------------------------LTP-----LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805 (1153)
T ss_pred -cccccc-------------------------------cch-----hhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence 111111 000 0001122577777777766666666777777777
Q ss_pred EEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc--
Q 008856 315 TISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-- 392 (551)
Q Consensus 315 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-- 392 (551)
.|++++|+.++.+|..+ .+++|++|++++|..+..+|... ++|+.|++++ +.++.+|..+..+++|+.|++++
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS---TNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred EEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---cccCEeECCC-CCCccChHHHhcCCCCCEEECCCCC
Confidence 77777777777776554 56777777777777776665432 3677777776 45666777677777777777766
Q ss_pred cccccccC-CcCCCcceeEecCCchhh
Q 008856 393 ALLSLEED-GLPTNLHSLVIRGNMEIW 418 (551)
Q Consensus 393 ~l~~l~~~-~~~~~L~~L~l~~~~~~~ 418 (551)
.+..++.. ..+++|+.+++++|..+.
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCcccc
Confidence 55555543 445667777777776554
|
syringae 6; Provisional |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-25 Score=213.08 Aligned_cols=380 Identities=16% Similarity=0.206 Sum_probs=209.7
Q ss_pred CCCc-cEEEecCCCCchhhcccCcchhcc-c-CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc
Q 008856 59 IPKL-EELKINNIQNETCIWKSHNELLQD-I-CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV 135 (551)
Q Consensus 59 ~~~L-~~L~l~~~~~l~~~~~~~~~~~~~-l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~ 135 (551)
|+.. +.|+.++ +.++.+ ....+.. + +.-+.|+++++ .+..+..+ .+.++ ++|+.+++.+ +.++
T Consensus 50 c~c~~~lldcs~-~~lea~---~~~~l~g~lp~~t~~LdlsnN-kl~~id~~----~f~nl----~nLq~v~l~~-N~Lt 115 (873)
T KOG4194|consen 50 CPCNTRLLDCSD-RELEAI---DKSRLKGFLPSQTQTLDLSNN-KLSHIDFE----FFYNL----PNLQEVNLNK-NELT 115 (873)
T ss_pred CCCCceeeecCc-cccccc---cccccCCcCccceeeeecccc-ccccCcHH----HHhcC----Ccceeeeecc-chhh
Confidence 4433 4456665 566655 2222222 2 34567999984 57777664 36677 8999999988 5678
Q ss_pred ccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc
Q 008856 136 KLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV 213 (551)
Q Consensus 136 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 213 (551)
.+|.......+|+.|++.+ +.+.++.. ++..+.|++|+++.|. +..++...+.. ..++++|++++ +.++.+..+
T Consensus 116 ~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~-~~ni~~L~La~-N~It~l~~~ 191 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPA-KVNIKKLNLAS-NRITTLETG 191 (873)
T ss_pred hcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCC-CCCceEEeecc-ccccccccc
Confidence 8887777778899999987 56666554 4557888888888843 55554332211 16788888887 455555544
Q ss_pred c--CCCCccEEEEecCCCccccccccc-ccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCcc
Q 008856 214 Q--LPSSLKMLTIWYCDNIRTLTVEEG-IQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLK 290 (551)
Q Consensus 214 ~--~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~ 290 (551)
. .+.+|-.|.+++ +.++.+ |.. |.+ +++| +
T Consensus 192 ~F~~lnsL~tlkLsr-NrittL--p~r~Fk~--------L~~L------------------------------------~ 224 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSR-NRITTL--PQRSFKR--------LPKL------------------------------------E 224 (873)
T ss_pred cccccchheeeeccc-Cccccc--CHHHhhh--------cchh------------------------------------h
Confidence 2 234666666665 345544 332 211 3334 4
Q ss_pred EEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEcc
Q 008856 291 SLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYD 368 (551)
Q Consensus 291 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 368 (551)
.|++..|.+-..-...|.++++|+.|.+.. +++..+. ..+-.+.++++|+++. +.+..+.. ....+++|+.|++++
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccch
Confidence 444444432222233344455555555544 3343331 2223344555555554 23333332 112233455555554
Q ss_pred Ccccccc-ccccccCCcccceeccc-cccccccCC--cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCC
Q 008856 369 CKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEEDG--LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDD 444 (551)
Q Consensus 369 c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 444 (551)
+.+.++ +++++..++|+.|+++. .+.++++.+ .+..|++|+|+.|. ++.+.... +.++.+|++|++++|.
T Consensus 303 -NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a---f~~lssL~~LdLr~N~- 376 (873)
T KOG4194|consen 303 -NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA---FVGLSSLHKLDLRSNE- 376 (873)
T ss_pred -hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhH---HHHhhhhhhhcCcCCe-
Confidence 233332 34455555555555555 555555542 24666777777666 44333332 6667777777777662
Q ss_pred CCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCCCccccCCCCC-ccccceEe
Q 008856 445 DTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFPEKGL-PSSLLELW 519 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~ 519 (551)
+...-++. ...|..+++|+.|++.+ |+++.+| ..+..|+.|++|++.+ +-+.++-...+ +-.|++|.
T Consensus 377 ---ls~~IEDa---a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv 445 (873)
T KOG4194|consen 377 ---LSWCIEDA---AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELV 445 (873)
T ss_pred ---EEEEEecc---hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhh
Confidence 33222211 12344567777777777 7777777 5567777788888877 44555533222 22455553
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-24 Score=208.32 Aligned_cols=335 Identities=17% Similarity=0.243 Sum_probs=197.7
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-c
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL-P 138 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~-~ 138 (551)
+.-+.|++++ +++.++ ....|..+++|+.+++.++ .++.||..+ +.. .+|+.|+|.+| .+..+ .
T Consensus 78 ~~t~~Ldlsn-Nkl~~i---d~~~f~nl~nLq~v~l~~N-~Lt~IP~f~-----~~s----ghl~~L~L~~N-~I~sv~s 142 (873)
T KOG4194|consen 78 SQTQTLDLSN-NKLSHI---DFEFFYNLPNLQEVNLNKN-ELTRIPRFG-----HES----GHLEKLDLRHN-LISSVTS 142 (873)
T ss_pred cceeeeeccc-cccccC---cHHHHhcCCcceeeeeccc-hhhhccccc-----ccc----cceeEEeeecc-ccccccH
Confidence 4567899998 788876 5566788999999999984 688887642 222 67999999985 44444 3
Q ss_pred cccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC-
Q 008856 139 QSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL- 215 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 215 (551)
+.+..++.|+.||++. +.++.++. +..-.++++|++++|. ++.+....+ .++.+|..|.++. +.++.+|...+
T Consensus 143 e~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~Fk 218 (873)
T KOG4194|consen 143 EELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSR-NRITTLPQRSFK 218 (873)
T ss_pred HHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeeccc-CcccccCHHHhh
Confidence 5677788999999998 57777664 3345679999999854 666554322 3447899999987 56777776633
Q ss_pred -CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEe
Q 008856 216 -PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRV 294 (551)
Q Consensus 216 -~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l 294 (551)
+++|+.|++.+ +.++.+. .-.|.. +++|+.|.+.. +++.. ...+.|-. + .++++|++
T Consensus 219 ~L~~L~~LdLnr-N~irive-~ltFqg--------L~Sl~nlklqr-N~I~k-L~DG~Fy~-l---------~kme~l~L 276 (873)
T KOG4194|consen 219 RLPKLESLDLNR-NRIRIVE-GLTFQG--------LPSLQNLKLQR-NDISK-LDDGAFYG-L---------EKMEHLNL 276 (873)
T ss_pred hcchhhhhhccc-cceeeeh-hhhhcC--------chhhhhhhhhh-cCccc-ccCcceee-e---------cccceeec
Confidence 68899998877 3343220 111222 33455555544 33333 22222211 0 13566666
Q ss_pred ccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCC-CCCCCccEEEEccCccc
Q 008856 295 RYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGG-LPCAKLTALEIYDCKRL 372 (551)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l 372 (551)
..|.....-.+.+.+++.|++|++++ +.+..+ +.+...+++|++|++++ +.++.++... ..+..|++|.++. +.+
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi 353 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSI 353 (873)
T ss_pred ccchhhhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cch
Confidence 66644333334455566666666666 555544 44444556666666666 4555554421 1233566666665 445
Q ss_pred ccccc-ccccCCcccceeccc-cccc-ccc----CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 373 KALPK-GLHNLSTLQDLTIGG-ALLS-LEE----DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 373 ~~~~~-~~~~l~~L~~L~l~~-~l~~-l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
..+.+ .+..+.+|+.|+++. .+.. ++. ...++.|+.|++.||+ ++.+.... +.++++||+|++.+|
T Consensus 354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krA---fsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRA---FSGLEALEHLDLGDN 426 (873)
T ss_pred HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhh---hccCcccceecCCCC
Confidence 55443 244556666666655 2211 111 1225666666666665 33332222 556666666666665
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-24 Score=220.75 Aligned_cols=399 Identities=19% Similarity=0.248 Sum_probs=210.4
Q ss_pred CCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc
Q 008856 56 KPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV 135 (551)
Q Consensus 56 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~ 135 (551)
.+...+|+.|++++ +.+... |.. +..+++|+.|+++.+ .+..+|.+ ...+ .+|++|.|.+ +.++
T Consensus 41 ~~~~v~L~~l~lsn-n~~~~f---p~~-it~l~~L~~ln~s~n-~i~~vp~s-----~~~~----~~l~~lnL~~-n~l~ 104 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSN-NQISSF---PIQ-ITLLSHLRQLNLSRN-YIRSVPSS-----CSNM----RNLQYLNLKN-NRLQ 104 (1081)
T ss_pred hhheeeeEEeeccc-cccccC---Cch-hhhHHHHhhcccchh-hHhhCchh-----hhhh----hcchhheecc-chhh
Confidence 33345577888877 444443 333 566777888887763 46666643 4444 7778888775 5667
Q ss_pred ccccccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhh--------------hhccCCCccE-E
Q 008856 136 KLPQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAW--------------MCDTNSSLEI-L 199 (551)
Q Consensus 136 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~--------------~~~~~~~L~~-L 199 (551)
..|.++..+++|+.|+++. +.+..+|. +..+..+..+..++|..+..++... +......+++ |
T Consensus 105 ~lP~~~~~lknl~~LdlS~-N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~l 183 (1081)
T KOG0618|consen 105 SLPASISELKNLQYLDLSF-NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQL 183 (1081)
T ss_pred cCchhHHhhhcccccccch-hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheee
Confidence 7777777777888888877 45555554 3445555555555542222222110 0000022333 4
Q ss_pred EEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhh
Q 008856 200 SIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLES 279 (551)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 279 (551)
++.++... ......+++|+.+...+ +.+..+. ..-++++.|...+|.-. . ......|.
T Consensus 184 dLr~N~~~--~~dls~~~~l~~l~c~r-n~ls~l~-------------~~g~~l~~L~a~~n~l~-~-~~~~p~p~---- 241 (1081)
T KOG0618|consen 184 DLRYNEME--VLDLSNLANLEVLHCER-NQLSELE-------------ISGPSLTALYADHNPLT-T-LDVHPVPL---- 241 (1081)
T ss_pred ecccchhh--hhhhhhccchhhhhhhh-cccceEE-------------ecCcchheeeeccCcce-e-eccccccc----
Confidence 44443221 11112233344443332 2222220 11224555555553322 1 22222333
Q ss_pred ccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCC
Q 008856 280 LEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCA 359 (551)
Q Consensus 280 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 359 (551)
+|++++++++. ...++..++.+++|+.+...+ +.+..+|..+....+|+.|.+.. +.++.+|.......
T Consensus 242 --------nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~ 310 (1081)
T KOG0618|consen 242 --------NLQYLDISHNN-LSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLK 310 (1081)
T ss_pred --------cceeeecchhh-hhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccc
Confidence 78888888873 555667778888888888887 66777777777777888887777 46777776555556
Q ss_pred CccEEEEccCcccccccccccc-CC-cccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCc
Q 008856 360 KLTALEIYDCKRLKALPKGLHN-LS-TLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSL 434 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~-l~-~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 434 (551)
+|++|++.. +++.++|+.+-. +. +|..|+.+. .+...+.. ...+.|+.|.+.+|+.-+..++. +.+++.|
T Consensus 311 sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~----l~~~~hL 385 (1081)
T KOG0618|consen 311 SLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV----LVNFKHL 385 (1081)
T ss_pred eeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh----hccccce
Confidence 788888877 556666653211 11 133333333 33333322 22345555555555544444333 4455555
Q ss_pred cEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccc
Q 008856 435 RHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSS 514 (551)
Q Consensus 435 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 514 (551)
+.|++++|. +..||... ++.+..|++|++++ |+|+.+|..+.+++.|++|...+ +.+..+|+...+++
T Consensus 386 KVLhLsyNr----L~~fpas~------~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~q 453 (1081)
T KOG0618|consen 386 KVLHLSYNR----LNSFPASK------LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQ 453 (1081)
T ss_pred eeeeecccc----cccCCHHH------HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCc
Confidence 555555553 55555533 23344555555555 55555554444444444444444 33444443333334
Q ss_pred cceEeec
Q 008856 515 LLELWIS 521 (551)
Q Consensus 515 L~~L~i~ 521 (551)
|+.+|++
T Consensus 454 L~~lDlS 460 (1081)
T KOG0618|consen 454 LKVLDLS 460 (1081)
T ss_pred ceEEecc
Confidence 4444443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-24 Score=202.99 Aligned_cols=376 Identities=19% Similarity=0.212 Sum_probs=204.8
Q ss_pred ccCCCCcceEEeCCCCCcccccc---ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchh
Q 008856 8 ITSLPALCKMEIGGCKKVVWRSA---TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELL 84 (551)
Q Consensus 8 ~~~~~~L~~L~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 84 (551)
+..++.+.+|++++++..+.++. +..++.+++++....+ +|.. ....++++.++.+. +.+..+ +.+ +
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~----lp~~-i~s~~~l~~l~~s~-n~~~el---~~~-i 133 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE----LPEQ-IGSLISLVKLDCSS-NELKEL---PDS-I 133 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh----ccHH-Hhhhhhhhhhhccc-cceeec---Cch-H
Confidence 34456667777777776665554 4445555555544332 3332 22356677777776 455544 444 4
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE- 163 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~- 163 (551)
+.+..|+.++..++ ++.++|+. +..+ .+|..+++.++ .++.+|...-+|..|++|+... +.++.+|+
T Consensus 134 ~~~~~l~dl~~~~N-~i~slp~~-----~~~~----~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~ 201 (565)
T KOG0472|consen 134 GRLLDLEDLDATNN-QISSLPED-----MVNL----SKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS-NLLETLPPE 201 (565)
T ss_pred HHHhhhhhhhcccc-ccccCchH-----HHHH----HHHHHhhcccc-chhhCCHHHHHHHHHHhcccch-hhhhcCChh
Confidence 56667777776663 46666665 3333 56666677663 4455555544577777777655 45666666
Q ss_pred CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc--cCCCCccEEEEecCCCcccccccccccc
Q 008856 164 VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDNIRTLTVEEGIQC 241 (551)
Q Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 241 (551)
.+.+.+|+.|++.. +++..+|+. .++..|+.|.+.. +.++.++.+ ..++++..||+.. ++++++ |+++.-
T Consensus 202 lg~l~~L~~LyL~~-Nki~~lPef---~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~--Pde~cl 273 (565)
T KOG0472|consen 202 LGGLESLELLYLRR-NKIRFLPEF---PGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEV--PDEICL 273 (565)
T ss_pred hcchhhhHHHHhhh-cccccCCCC---CccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccC--chHHHH
Confidence 66677777777766 335566644 4456666666665 445555554 3456777777776 567777 776665
Q ss_pred cCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcC-----CCCCcE-
Q 008856 242 SSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDN-----NTSLET- 315 (551)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~- 315 (551)
+.+|++|++++ +.++. +|..+.+++ |+.|.+.+|+.-+.-.+.+.. +..|++
T Consensus 274 --------LrsL~rLDlSN-N~is~------Lp~sLgnlh-------L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 274 --------LRSLERLDLSN-NDISS------LPYSLGNLH-------LKFLALEGNPLRTIRREIISKGTQEVLKYLRSK 331 (565)
T ss_pred --------hhhhhhhcccC-Ccccc------CCcccccce-------eeehhhcCCchHHHHHHHHcccHHHHHHHHHHh
Confidence 55677777777 44444 555455554 777777777643322111110 001111
Q ss_pred ---EEEecC--CCcc--cccc----cccCCCCcceEEecCCCCCccCCCCCCCCC---CccEEEEccCcccccccccccc
Q 008856 316 ---ISIYNC--ENLK--ILPS----GLHKLHQLREISIGSCGNLVSFPGGGLPCA---KLTALEIYDCKRLKALPKGLHN 381 (551)
Q Consensus 316 ---L~l~~~--~~l~--~~~~----~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~---~L~~L~l~~c~~l~~~~~~~~~ 381 (551)
=.++.. .... +.+. ....+.+.+.|++++ ..++.+|....... -...++++. +++.++|..+..
T Consensus 332 ~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~ 409 (565)
T KOG0472|consen 332 IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVE 409 (565)
T ss_pred hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHH
Confidence 000000 0000 0011 112245677777777 56666665222111 255666666 556667766555
Q ss_pred CCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 382 LSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 382 l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++.+.+.-+.. +..++++. ..+++|..|++++|. +.+.+.+ +.++..|+.|+++.|
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e----~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEE----MGSLVRLQTLNLSFN 468 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchh----hhhhhhhheeccccc
Confidence 55543332222 33333332 345666677776665 4444444 345566777777666
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-23 Score=203.97 Aligned_cols=337 Identities=21% Similarity=0.333 Sum_probs=184.4
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc--
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-- 135 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-- 135 (551)
.+.+++.|.+.+ +++..+ |.. ++.+.+|++|.+.++ ++..+-.+ +..+ |.|+.+.+..| +++
T Consensus 30 qMt~~~WLkLnr-t~L~~v---PeE-L~~lqkLEHLs~~HN-~L~~vhGE-----Ls~L----p~LRsv~~R~N-~LKns 93 (1255)
T KOG0444|consen 30 QMTQMTWLKLNR-TKLEQV---PEE-LSRLQKLEHLSMAHN-QLISVHGE-----LSDL----PRLRSVIVRDN-NLKNS 93 (1255)
T ss_pred HhhheeEEEech-hhhhhC---hHH-HHHHhhhhhhhhhhh-hhHhhhhh-----hccc----hhhHHHhhhcc-ccccC
Confidence 356666677666 566665 554 466667777777764 35444332 5555 66677766663 333
Q ss_pred ccccccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc-
Q 008856 136 KLPQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV- 213 (551)
Q Consensus 136 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~- 213 (551)
.+|..+..+..|..|++++ +.++..|. +....++-.|+++.|. ++.+|...+ ..+..|-.||+++ +.++.+|..
T Consensus 94 GiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~-NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSN-NRLEMLPPQI 169 (1255)
T ss_pred CCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhcccc-chhhhcCHHH
Confidence 4566666677777777766 46666665 4445666666666633 555554322 2335555666665 334444433
Q ss_pred cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEE
Q 008856 214 QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLR 293 (551)
Q Consensus 214 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 293 (551)
.-+.+|++|++++++-.. +....+|+ + .+|+.|.
T Consensus 170 RRL~~LqtL~Ls~NPL~h------------------------------------fQLrQLPs-m---------tsL~vLh 203 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNH------------------------------------FQLRQLPS-M---------TSLSVLH 203 (1255)
T ss_pred HHHhhhhhhhcCCChhhH------------------------------------HHHhcCcc-c---------hhhhhhh
Confidence 223445555555432110 11111111 0 1245555
Q ss_pred eccCcc-hhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccc
Q 008856 294 VRYCSK-LESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRL 372 (551)
Q Consensus 294 l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 372 (551)
+++... ...+|..+..+.+|..++++. +++..+|..+.++++|+.|.+++ ++++.+......+.+|++|+++. +++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQL 280 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQL 280 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chh
Confidence 544432 234455555666666666665 55666666666666666666666 45555554444444666666666 556
Q ss_pred cccccccccCCcccceeccc---cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcc
Q 008856 373 KALPKGLHNLSTLQDLTIGG---ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMM 448 (551)
Q Consensus 373 ~~~~~~~~~l~~L~~L~l~~---~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 448 (551)
+.+|..+..+++|+.|.+.+ ..+.+|.+ +.+.+|+++...+|. +.- .|+. +..++.|+.|.+++|. +
T Consensus 281 t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LEl-VPEg---lcRC~kL~kL~L~~Nr----L 351 (1255)
T KOG0444|consen 281 TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LEL-VPEG---LCRCVKLQKLKLDHNR----L 351 (1255)
T ss_pred ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-ccc-Cchh---hhhhHHHHHhcccccc----e
Confidence 66666666666666666655 44455554 445566666655554 221 2222 5566666666666652 5
Q ss_pred cccccccccccccccccccccccccccCCCh
Q 008856 449 VSFPLEDKRLGTVLRLPTTLTSLRIEDFPNL 479 (551)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 479 (551)
..+|+.+ -+++.|+.|++++.+++
T Consensus 352 iTLPeaI-------HlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 352 ITLPEAI-------HLLPDLKVLDLRENPNL 375 (1255)
T ss_pred eechhhh-------hhcCCcceeeccCCcCc
Confidence 5566544 24556666666665554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-23 Score=201.07 Aligned_cols=364 Identities=20% Similarity=0.279 Sum_probs=180.1
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
+|-.+-.++++ +..+ ....+.....+..++-|.+.. ..+..+|++ ++.+ ++|++|.++. +.+..+.
T Consensus 6 LpFVrGvDfsg-NDFs--g~~FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~H-N~L~~vh 71 (1255)
T KOG0444|consen 6 LPFVRGVDFSG-NDFS--GDRFPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAH-NQLISVH 71 (1255)
T ss_pred cceeecccccC-CcCC--CCcCchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhh-hhhHhhh
Confidence 45555566666 3322 011222345566666666666 446666655 5555 6666666666 3445555
Q ss_pred cccCCCCCCceEEEccCCCCc--ccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 139 QSSFSLSSLREIEIFKCSSLV--SFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
..+..++.|+.+.+.+ ++++ .+|+ +..+..|..|+++.|. +...|.. . ..
T Consensus 72 GELs~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~---L----------------------E~ 124 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN---L----------------------EY 124 (1255)
T ss_pred hhhccchhhHHHhhhc-cccccCCCCchhcccccceeeecchhh-hhhcchh---h----------------------hh
Confidence 5566666666666655 2222 2333 3334444444444422 3333322 0 12
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
..+.-.|.+++ +++..+ |..++- .+..|-.|++++ +++.. +|+.+..|. .|+.|.++
T Consensus 125 AKn~iVLNLS~-N~IetI--Pn~lfi-------nLtDLLfLDLS~-NrLe~------LPPQ~RRL~------~LqtL~Ls 181 (1255)
T KOG0444|consen 125 AKNSIVLNLSY-NNIETI--PNSLFI-------NLTDLLFLDLSN-NRLEM------LPPQIRRLS------MLQTLKLS 181 (1255)
T ss_pred hcCcEEEEccc-CccccC--CchHHH-------hhHhHhhhcccc-chhhh------cCHHHHHHh------hhhhhhcC
Confidence 22333444444 344444 433221 011233344444 33322 333333333 35555555
Q ss_pred cCcchhhhHhhhcCCCCCcEEEEecCCC-cccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc
Q 008856 296 YCSKLESIAERLDNNTSLETISIYNCEN-LKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA 374 (551)
Q Consensus 296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 374 (551)
+|+..-.-...+..+.+|++|.+++... +..+|.++..+.+|+.+|++. +.+..
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-------------------------N~Lp~ 236 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-------------------------NNLPI 236 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-------------------------cCCCc
Confidence 5543222222233344444444444221 223344444555555555544 33444
Q ss_pred cccccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccc
Q 008856 375 LPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFP 452 (551)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 452 (551)
+|+.+.++++|+.|++++ .+..+... +...+|++|+++.|+ +...+.. +..+++|++|.+.+|.-. ...+|
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a----vcKL~kL~kLy~n~NkL~--FeGiP 309 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDA----VCKLTKLTKLYANNNKLT--FEGIP 309 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHH----HhhhHHHHHHHhccCccc--ccCCc
Confidence 444445555555555555 44433322 233466666666665 3322222 556667777776666333 55666
Q ss_pred cccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC-CccccceEeecCCchHH
Q 008856 453 LEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG-LPSSLLELWISGCPLIE 527 (551)
Q Consensus 453 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~i~~c~~l~ 527 (551)
..++ -+..|+.+..++ |+++-+|.++..+++|+.|.+.. +++-.+|+.. +++-|+.|++..+|++.
T Consensus 310 SGIG-------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 310 SGIG-------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cchh-------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 6552 455677777776 67777777777777777777766 5566666643 35677777777776553
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-23 Score=209.39 Aligned_cols=433 Identities=20% Similarity=0.202 Sum_probs=276.4
Q ss_pred cceEEeCCCCCcc-----ccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccC
Q 008856 14 LCKMEIGGCKKVV-----WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 88 (551)
Q Consensus 14 L~~L~l~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 88 (551)
+..|++..+-.+. +...+. |+.|++++..... ||..+ ..+.+|+.|+++. +.+..+ +.. ...+.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~-L~~l~lsnn~~~~----fp~~i-t~l~~L~~ln~s~-n~i~~v---p~s-~~~~~ 91 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVK-LKSLDLSNNQISS----FPIQI-TLLSHLRQLNLSR-NYIRSV---PSS-CSNMR 91 (1081)
T ss_pred HHhhhccccccccCchHHhhheee-eEEeecccccccc----CCchh-hhHHHHhhcccch-hhHhhC---chh-hhhhh
Confidence 5555655554444 122233 7777777665442 33332 2356777777776 566665 533 46677
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-----
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE----- 163 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~----- 163 (551)
+|++|.|.+ +.+..+|.+ +..+ .+|+.|+++++ ....+|..+..+..++.+..+++-++..++.
T Consensus 92 ~l~~lnL~~-n~l~~lP~~-----~~~l----knl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~ 160 (1081)
T KOG0618|consen 92 NLQYLNLKN-NRLQSLPAS-----ISEL----KNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKK 160 (1081)
T ss_pred cchhheecc-chhhcCchh-----HHhh----hcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchh
Confidence 788888776 456666655 6666 77788888774 3345555555555555555554322222221
Q ss_pred ---------------CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCC
Q 008856 164 ---------------VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCD 228 (551)
Q Consensus 164 ---------------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 228 (551)
...+.+ .|++..+... ... . ..+++|+.+.... ..+..+. ..-++++.|+..+|.
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d-l---s~~~~l~~l~c~r-n~ls~l~--~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD-L---SNLANLEVLHCER-NQLSELE--ISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccchhh-hhh-h---hhccchhhhhhhh-cccceEE--ecCcchheeeeccCc
Confidence 111222 2444443311 100 0 0112233332221 1111111 222567777777754
Q ss_pred CcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhc
Q 008856 229 NIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLD 308 (551)
Q Consensus 229 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 308 (551)
-.+.. .. ....+|++++++. ++++. +|.|+.... +|+.++..+|.. ..++..+.
T Consensus 231 l~~~~--~~----------p~p~nl~~~dis~-n~l~~------lp~wi~~~~------nle~l~~n~N~l-~~lp~ri~ 284 (1081)
T KOG0618|consen 231 LTTLD--VH----------PVPLNLQYLDISH-NNLSN------LPEWIGACA------NLEALNANHNRL-VALPLRIS 284 (1081)
T ss_pred ceeec--cc----------cccccceeeecch-hhhhc------chHHHHhcc------cceEecccchhH-HhhHHHHh
Confidence 33211 11 1134799999988 55554 556555554 799999998865 77778888
Q ss_pred CCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCC--CCCccEEEEccCccccccccc-cccCCcc
Q 008856 309 NNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLP--CAKLTALEIYDCKRLKALPKG-LHNLSTL 385 (551)
Q Consensus 309 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~-~~~l~~L 385 (551)
...+|+.|.+.+ +.++.+|.....+++|++|++.. +++..+|..... ..+|+.++.+. +.+...|.. -..+..|
T Consensus 285 ~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 285 RITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAAL 361 (1081)
T ss_pred hhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHH
Confidence 889999999988 67888888888899999999999 678888763222 11355666654 555555532 2356789
Q ss_pred cceeccc---cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccc
Q 008856 386 QDLTIGG---ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVL 462 (551)
Q Consensus 386 ~~L~l~~---~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
+.|++.+ +-+.+|....+++|+.|++++|+.-. ++... +.++..|++|+++|| . ++.+|+..
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~--~~kle~LeeL~LSGN--k--L~~Lp~tv------- 426 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASK--LRKLEELEELNLSGN--K--LTTLPDTV------- 426 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHH--HhchHHhHHHhcccc--h--hhhhhHHH-------
Confidence 9999988 66678888888999999999997332 22222 788999999999999 4 88998765
Q ss_pred cccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCC-CCCc-cccceEeecCCch
Q 008856 463 RLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE-KGLP-SSLLELWISGCPL 525 (551)
Q Consensus 463 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~i~~c~~ 525 (551)
...+.|++|.... |.+-.+| .+..++.|+.+|++. ++++.+.- +..+ ++||+|+++|++.
T Consensus 427 a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 3567999999998 8999999 778899999999998 67776533 3445 8999999999974
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-23 Score=196.82 Aligned_cols=398 Identities=24% Similarity=0.313 Sum_probs=225.7
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
++..+..|++++ +++..+ |+. ++.+..++.++.+++ ++..+|+. +..+ .+|+.++.++ +.+.++
T Consensus 66 nL~~l~vl~~~~-n~l~~l---p~a-ig~l~~l~~l~vs~n-~ls~lp~~-----i~s~----~~l~~l~~s~-n~~~el 129 (565)
T KOG0472|consen 66 NLACLTVLNVHD-NKLSQL---PAA-IGELEALKSLNVSHN-KLSELPEQ-----IGSL----ISLVKLDCSS-NELKEL 129 (565)
T ss_pred cccceeEEEecc-chhhhC---CHH-HHHHHHHHHhhcccc-hHhhccHH-----Hhhh----hhhhhhhccc-cceeec
Confidence 345555566665 444444 433 455556666666653 35555554 3444 5566666665 344555
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc-cC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QL 215 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~ 215 (551)
+.+++.+-.|+.++-.+ +++.++|. +..+.+|..+.+.++. ++..++.... ...|++||... +.++.+|.. +.
T Consensus 130 ~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~--m~~L~~ld~~~-N~L~tlP~~lg~ 204 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA--MKRLKHLDCNS-NLLETLPPELGG 204 (565)
T ss_pred CchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH--HHHHHhcccch-hhhhcCChhhcc
Confidence 55666666666666555 34555554 4445555666665533 4444443222 24566665544 334455444 44
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
+.+|+.|++.+ +++..+ | .|.. |..|+.++++. +.++. +|.... +++. ++..||++
T Consensus 205 l~~L~~LyL~~-Nki~~l--P-ef~g--------cs~L~Elh~g~-N~i~~-lpae~~----~~L~------~l~vLDLR 260 (565)
T KOG0472|consen 205 LESLELLYLRR-NKIRFL--P-EFPG--------CSLLKELHVGE-NQIEM-LPAEHL----KHLN------SLLVLDLR 260 (565)
T ss_pred hhhhHHHHhhh-cccccC--C-CCCc--------cHHHHHHHhcc-cHHHh-hHHHHh----cccc------cceeeecc
Confidence 45555566555 344444 4 3333 44455555544 33332 221110 0111 46677777
Q ss_pred cCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccC------------------------
Q 008856 296 YCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSF------------------------ 351 (551)
Q Consensus 296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l------------------------ 351 (551)
.| .++..|..+.-+++|..|++++ +.+..+|..++++ .|+.|.+.|++ +..+
T Consensus 261 dN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 261 DN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 66 4566666666667777777776 5566667666666 66666666542 1000
Q ss_pred -------------------CCCCCCCCCccEEEEccCccccccccccccCCc---ccceeccc-cccccccC-CcCCCcc
Q 008856 352 -------------------PGGGLPCAKLTALEIYDCKRLKALPKGLHNLST---LQDLTIGG-ALLSLEED-GLPTNLH 407 (551)
Q Consensus 352 -------------------~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~---L~~L~l~~-~l~~l~~~-~~~~~L~ 407 (551)
|.... ..+.+.|++++ .+++.+|..+..... ....+++. .+..+|.. ..+..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~-~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelv 414 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYA-IITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELV 414 (565)
T ss_pred CCCCcccccccCCCCCCcccchhh-hhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHH
Confidence 00000 12566677766 567777754332222 45566666 66666653 1122222
Q ss_pred -eeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh---
Q 008856 408 -SLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS--- 483 (551)
Q Consensus 408 -~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--- 483 (551)
.+.++.|. +..+... +..+++|..|++++|. +..+|.+.+ .+..|+.|++++ |+++.+|
T Consensus 415 T~l~lsnn~-isfv~~~----l~~l~kLt~L~L~NN~----Ln~LP~e~~-------~lv~Lq~LnlS~-NrFr~lP~~~ 477 (565)
T KOG0472|consen 415 TDLVLSNNK-ISFVPLE----LSQLQKLTFLDLSNNL----LNDLPEEMG-------SLVRLQTLNLSF-NRFRMLPECL 477 (565)
T ss_pred HHHHhhcCc-cccchHH----HHhhhcceeeecccch----hhhcchhhh-------hhhhhheecccc-cccccchHHH
Confidence 34445554 3322222 7789999999999995 889998773 455688888888 6665544
Q ss_pred ---------------------hhccCCCCcCEEEEcCCCCccccCC-CCCccccceEeecCCc
Q 008856 484 ---------------------SSIIDLRNLTELVLRGCPKLKYFPE-KGLPSSLLELWISGCP 524 (551)
Q Consensus 484 ---------------------~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~i~~c~ 524 (551)
.++.++++|++|++.. +.+..+|. .+.+.+|+.|.+.|+|
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 2466788899999988 66777776 4668899999999986
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=151.06 Aligned_cols=173 Identities=30% Similarity=0.366 Sum_probs=108.4
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|+.|++++|. ++.++. ..++|+.|++++ +.+..+|.. ..+|+.|++++ +.+..+|.. +++|+.|+++
T Consensus 283 ~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~-N~L~~Lp~l---p~~L~~L~Ls~-N~L~~LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQ-LTSLPV---LPPGLQELSVSD-NQLASLPAL---PSELCKLWAYN-NQLTSLPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCc-cccccc---cccccceeECCC-CccccCCCC---ccccccccccc-Ccccccccc---ccccceEecC
Confidence 35566665553 222322 235566666666 455555432 23466666666 345555531 1367777777
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+ ++++.+|... .+|+.|++++ .+..+|. .+++|+.|++++|.. ... +. ..++|+.|++++|.
T Consensus 351 ~-N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~--l~~~L~~LdLs~N~L-t~L-P~------l~s~L~~LdLS~N~--- 413 (788)
T PRK15387 351 D-NQLASLPTLP---SELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRL-TSL-PV------LPSELKELMVSGNR--- 413 (788)
T ss_pred C-CccCCCCCCC---cccceehhhccccccCcc--cccccceEEecCCcc-cCC-CC------cccCCCEEEccCCc---
Confidence 6 4566665432 3556666666 5555654 245788888888873 221 11 23578889999884
Q ss_pred cccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
+..+|. .+.+|+.|++++ |.++.+|..+..+++|+.|++++++
T Consensus 414 -LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 414 -LTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -CCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 777775 346788899988 7888898888888999999999855
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-14 Score=148.18 Aligned_cols=254 Identities=27% Similarity=0.335 Sum_probs=189.4
Q ss_pred CCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCc
Q 008856 194 SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNEL 273 (551)
Q Consensus 194 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 273 (551)
..-..|+++++ .++.+|. ..+++++.|.+.+ ++++.+ |... ++|++|++++ ++++. +|. +
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~-N~Lt~L--P~lp-----------~~Lk~LdLs~-N~Lts-LP~--l 260 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPD-NNLTSL--PALP-----------PELRTLEVSG-NQLTS-LPV--L 260 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccC-CcCCCC--CCCC-----------CCCcEEEecC-CccCc-ccC--c
Confidence 45667888875 6667765 3446899999988 577776 6543 3599999998 57776 442 2
Q ss_pred hhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC
Q 008856 274 PATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG 353 (551)
Q Consensus 274 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 353 (551)
|. +|+.|++++|. +..++. ...+|+.|++++ +.+..+|.. .++|+.|++++| .+..+|.
T Consensus 261 p~------------sL~~L~Ls~N~-L~~Lp~---lp~~L~~L~Ls~-N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~ 319 (788)
T PRK15387 261 PP------------GLLELSIFSNP-LTHLPA---LPSGLCKLWIFG-NQLTSLPVL---PPGLQELSVSDN-QLASLPA 319 (788)
T ss_pred cc------------ccceeeccCCc-hhhhhh---chhhcCEEECcC-Ccccccccc---ccccceeECCCC-ccccCCC
Confidence 33 69999999985 445544 236788999999 678887653 478999999994 7777765
Q ss_pred CCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCC
Q 008856 354 GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFS 432 (551)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 432 (551)
. +++|+.|++++ +.++.+|.. ..+|+.|++++ .+..+|. .+++|+.|++++|... . .+. ...
T Consensus 320 l---p~~L~~L~Ls~-N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L~-~-LP~------l~~ 382 (788)
T PRK15387 320 L---PSELCKLWAYN-NQLTSLPTL---PSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLT-S-LPA------LPS 382 (788)
T ss_pred C---ccccccccccc-Ccccccccc---ccccceEecCCCccCCCCC--CCcccceehhhccccc-c-Ccc------ccc
Confidence 2 23789999998 557777752 24799999999 8888876 3578999999988733 2 221 235
Q ss_pred CccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC-CC
Q 008856 433 SLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-GL 511 (551)
Q Consensus 433 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~ 511 (551)
+|+.|++++|. +..+|. .+++|+.|++++ +.+..+|.. ..+|+.|++++ ++++.+|.. ..
T Consensus 383 ~L~~LdLs~N~----Lt~LP~----------l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~ 443 (788)
T PRK15387 383 GLKELIVSGNR----LTSLPV----------LPSELKELMVSG-NRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIH 443 (788)
T ss_pred ccceEEecCCc----ccCCCC----------cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhcc-CcccccChHHhh
Confidence 89999999984 777775 457899999999 789888843 35788999999 679999874 23
Q ss_pred ccccceEeecCCc
Q 008856 512 PSSLLELWISGCP 524 (551)
Q Consensus 512 ~~~L~~L~i~~c~ 524 (551)
+++|+.|++++++
T Consensus 444 L~~L~~LdLs~N~ 456 (788)
T PRK15387 444 LSSETTVNLEGNP 456 (788)
T ss_pred ccCCCeEECCCCC
Confidence 6799999999996
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-13 Score=143.90 Aligned_cols=244 Identities=23% Similarity=0.348 Sum_probs=163.7
Q ss_pred CCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCc
Q 008856 194 SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNEL 273 (551)
Q Consensus 194 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 273 (551)
.+...|++++ ..++.+|.. .++.++.|+++++ +++.+ |..+.. +|+.|++++ +.++. +|.. +
T Consensus 178 ~~~~~L~L~~-~~LtsLP~~-Ip~~L~~L~Ls~N-~LtsL--P~~l~~----------nL~~L~Ls~-N~Lts-LP~~-l 239 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIPAC-IPEQITTLILDNN-ELKSL--PENLQG----------NIKTLYANS-NQLTS-IPAT-L 239 (754)
T ss_pred cCceEEEeCC-CCcCcCCcc-cccCCcEEEecCC-CCCcC--Chhhcc----------CCCEEECCC-Ccccc-CChh-h
Confidence 4567777776 355666542 3567888888774 67666 665433 688888887 44555 3332 2
Q ss_pred hhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC
Q 008856 274 PATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG 353 (551)
Q Consensus 274 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 353 (551)
+. +|+.|++++|.. ..++..+. .+|+.|++++ +.+..+|..+. ++|+.|++++| .++.+|.
T Consensus 240 ~~------------~L~~L~Ls~N~L-~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~ 300 (754)
T PRK15370 240 PD------------TIQEMELSINRI-TELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPA 300 (754)
T ss_pred hc------------cccEEECcCCcc-CcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCcc
Confidence 22 588888888854 34444432 4788888886 66777776553 57888888884 6766664
Q ss_pred CCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCC
Q 008856 354 GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFS 432 (551)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 432 (551)
... ++|+.|++++ +.++.+|..+. ++|+.|++++ .+..+|.. .+++|+.|++++|.. ... +.. + .+
T Consensus 301 ~lp--~sL~~L~Ls~-N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L-~~L-P~~---l--p~ 367 (754)
T PRK15370 301 HLP--SGITHLNVQS-NSLTALPETLP--PGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQI-TVL-PET---L--PP 367 (754)
T ss_pred cch--hhHHHHHhcC-CccccCCcccc--ccceeccccCCccccCChh-hcCcccEEECCCCCC-CcC-Chh---h--cC
Confidence 322 3788888887 45666665432 5788888888 77767653 347899999998873 322 221 1 25
Q ss_pred CccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhc----cCCCCcCEEEEcCCC
Q 008856 433 SLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSI----IDLRNLTELVLRGCP 501 (551)
Q Consensus 433 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~l~~L~~L~l~~c~ 501 (551)
+|+.|++++|. +..+|... +.+|+.|++++ +++..+|..+ ..++++..+++.+++
T Consensus 368 ~L~~LdLs~N~----Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 368 TITTLDVSRNA----LTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CcCEEECCCCc----CCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 88999999884 77777643 45789999998 7888776443 335788889998855
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-13 Score=141.94 Aligned_cols=244 Identities=20% Similarity=0.294 Sum_probs=180.8
Q ss_pred CCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEecc
Q 008856 217 SSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRY 296 (551)
Q Consensus 217 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~ 296 (551)
.+...|++++. +++.+ |..+.. +++.|++++ ++++. +|...++ +|++|++++
T Consensus 178 ~~~~~L~L~~~-~LtsL--P~~Ip~----------~L~~L~Ls~-N~Lts-LP~~l~~-------------nL~~L~Ls~ 229 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI--PACIPE----------QITTLILDN-NELKS-LPENLQG-------------NIKTLYANS 229 (754)
T ss_pred cCceEEEeCCC-CcCcC--Cccccc----------CCcEEEecC-CCCCc-CChhhcc-------------CCCEEECCC
Confidence 56778888874 67766 765544 699999988 56776 5543332 599999999
Q ss_pred CcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccc
Q 008856 297 CSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALP 376 (551)
Q Consensus 297 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 376 (551)
|. ++.++..+ .++|+.|++++ +.+..+|..+. .+|+.|++++ +.+..+|.... ++|+.|++++| +++.+|
T Consensus 230 N~-LtsLP~~l--~~~L~~L~Ls~-N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 230 NQ-LTSIPATL--PDTIQEMELSI-NRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLP 299 (754)
T ss_pred Cc-cccCChhh--hccccEEECcC-CccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCc
Confidence 85 45555443 35799999999 56778877654 5899999997 57777776432 48999999985 677787
Q ss_pred cccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccc
Q 008856 377 KGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLED 455 (551)
Q Consensus 377 ~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 455 (551)
..+. .+|+.|++++ .+..+|.. .+++|+.|++++|. +..+ +.. + .++|+.|++++|. +..+|..
T Consensus 300 ~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~-Lt~L-P~~---l--~~sL~~L~Ls~N~----L~~LP~~- 364 (754)
T PRK15370 300 AHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENA-LTSL-PAS---L--PPELQVLDVSKNQ----ITVLPET- 364 (754)
T ss_pred ccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCc-cccC-Chh---h--cCcccEEECCCCC----CCcCChh-
Confidence 6543 4789999998 77777653 35799999999997 3322 221 2 2699999999994 7778764
Q ss_pred ccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC-----CCccccceEeecCCch
Q 008856 456 KRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-----GLPSSLLELWISGCPL 525 (551)
Q Consensus 456 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~~ 525 (551)
.+++|+.|++++ +.+..+|..+. ..|+.|++++ +++..+|.. +..+++..+++.+++-
T Consensus 365 --------lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 365 --------LPPTITTLDVSR-NALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --------hcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 357999999999 68888886553 4799999999 568888762 1236789999999874
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-14 Score=137.08 Aligned_cols=302 Identities=18% Similarity=0.263 Sum_probs=147.3
Q ss_pred cceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhh
Q 008856 34 LGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQ 113 (551)
Q Consensus 34 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 113 (551)
|+.|++.||....+ .--..+...+|+++.|.+.+|.++++. .....-..+++|++|++..|..+++ ..+
T Consensus 140 lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd~--s~~sla~~C~~l~~l~L~~c~~iT~-------~~L 208 (483)
T KOG4341|consen 140 LKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITDS--SLLSLARYCRKLRHLNLHSCSSITD-------VSL 208 (483)
T ss_pred cccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccHH--HHHHHHHhcchhhhhhhcccchhHH-------HHH
Confidence 56777777765433 111223345777777777777766654 1112223567777777777776665 335
Q ss_pred hhhhccCCCccEEecccCccccc--cccccCCCCCCceEEEccCCCCcc--cCC-CCCCCCCcEEEccCCCCccccchhh
Q 008856 114 QQLCQLSCRLEYLILSYCEGLVK--LPQSSFSLSSLREIEIFKCSSLVS--FPE-VALPSKLKKIQIGECDALKSLPEAW 188 (551)
Q Consensus 114 ~~l~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~--~~~-~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (551)
..++..|++|++|++++|+.+.. +......+..++.+...+|..... +-- .+.++-+..+++..|..+++.....
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 55666777777777777766553 112233344455555555543221 110 1223444445555555555544332
Q ss_pred hhccCCCccEEEEecCCCcceeccc---cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCc
Q 008856 189 MCDTNSSLEILSIHGCRSLTYIAAV---QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLT 265 (551)
Q Consensus 189 ~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 265 (551)
...+...|+.|+.++|..+++.... ...++|+.+.++.|..+++. ++.. -...++.
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~----~ft~----l~rn~~~------------- 347 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR----GFTM----LGRNCPH------------- 347 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh----hhhh----hhcCChh-------------
Confidence 2233355566666655554444322 22345555555555444322 1111 0011233
Q ss_pred ccccCCCchhhhhhccccCCCCCccEEEeccCcchhh--hHhhhcCCCCCcEEEEecCCCcccc-----cccccCCCCcc
Q 008856 266 CIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLES--IAERLDNNTSLETISIYNCENLKIL-----PSGLHKLHQLR 338 (551)
Q Consensus 266 ~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~ 338 (551)
|+.+++..+....+ +...-.+++.|+.+.++.|..+++- ...-..+..|+
T Consensus 348 -----------------------Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~ 404 (483)
T KOG4341|consen 348 -----------------------LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE 404 (483)
T ss_pred -----------------------hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccc
Confidence 55555544443222 2222234566666666655444332 11223345566
Q ss_pred eEEecCCCCCccCCC-CCCCCCCccEEEEccCccccccc--cccccCCcccceec
Q 008856 339 EISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALP--KGLHNLSTLQDLTI 390 (551)
Q Consensus 339 ~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~--~~~~~l~~L~~L~l 390 (551)
.+.+++|+.++.-.. ....+++||.+++.+|..+++-+ ..-.++++++...+
T Consensus 405 ~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 405 VLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred eeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 666666655543211 22234466666666666554322 22345566555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-14 Score=134.36 Aligned_cols=300 Identities=15% Similarity=0.155 Sum_probs=154.9
Q ss_pred CccEEEecCCCCchhhcccCcc-hhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-
Q 008856 61 KLEELKINNIQNETCIWKSHNE-LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP- 138 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~- 138 (551)
.|++|.+.||..+.+- +.. +...+|++++|.+.+|.++++ ..+..++..|++|++|++..|..++...
T Consensus 139 ~lk~LSlrG~r~v~~s---slrt~~~~CpnIehL~l~gc~~iTd-------~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS---SLRTFASNCPNIEHLALYGCKKITD-------SSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred ccccccccccccCCcc---hhhHHhhhCCchhhhhhhcceeccH-------HHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 4566666665544432 211 223456666666666654444 2344445555666666666655554221
Q ss_pred -cccCCCCCCceEEEccCCCCccc--CC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceecccc
Q 008856 139 -QSSFSLSSLREIEIFKCSSLVSF--PE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQ 214 (551)
Q Consensus 139 -~~~~~l~~L~~L~l~~c~~l~~~--~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 214 (551)
.-...|++|++|++++|+.++.- .. ...+..++.+...||.....-...... .
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~-----------------------~ 265 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA-----------------------A 265 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh-----------------------c
Confidence 12334555555555555544431 11 111233333433344332221111111 2
Q ss_pred CCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEe
Q 008856 215 LPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRV 294 (551)
Q Consensus 215 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l 294 (551)
..+-+.++++.+|..+++.+++..... +..|+.|..++|..+++ ...+.+.. -..+|+.+.+
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~--------c~~lq~l~~s~~t~~~d-~~l~aLg~---------~~~~L~~l~l 327 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACG--------CHALQVLCYSSCTDITD-EVLWALGQ---------HCHNLQVLEL 327 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhh--------hhHhhhhcccCCCCCch-HHHHHHhc---------CCCceEEEec
Confidence 223344444445544443321111111 33466666666665554 22221111 0125777777
Q ss_pred ccCcchhhh-Hhhh-cCCCCCcEEEEecCCCcccc--cccccCCCCcceEEecCCCCCccC-----CCCCCCCCCccEEE
Q 008856 295 RYCSKLESI-AERL-DNNTSLETISIYNCENLKIL--PSGLHKLHQLREISIGSCGNLVSF-----PGGGLPCAKLTALE 365 (551)
Q Consensus 295 ~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~ 365 (551)
..|..+... ...+ .+++.|+.+++..|..+.+- ...-.+++.|+.+.+++|..+++- .........|+.+.
T Consensus 328 ~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 328 SGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred cccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee
Confidence 777654432 2222 36789999999997655432 233356899999999998766543 33333445899999
Q ss_pred EccCcccccc-ccccccCCcccceeccc--ccccccc---CCcCCCcceeEe
Q 008856 366 IYDCKRLKAL-PKGLHNLSTLQDLTIGG--ALLSLEE---DGLPTNLHSLVI 411 (551)
Q Consensus 366 l~~c~~l~~~-~~~~~~l~~L~~L~l~~--~l~~l~~---~~~~~~L~~L~l 411 (551)
+++|+.++.- -+.+..+++|+.+++.+ ++..-+. ...+|++++..+
T Consensus 408 L~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 408 LDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 9999987653 35567788999988876 3322211 134566666544
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-14 Score=132.06 Aligned_cols=257 Identities=15% Similarity=0.192 Sum_probs=131.2
Q ss_pred ccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEeccc
Q 008856 51 LAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSY 130 (551)
Q Consensus 51 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 130 (551)
+|+..++.+++||+|++++ ++++.+ .+.+|..++.|..|.+.+.+++++++.. .+..+ ..|+.|.+.-
T Consensus 82 iP~~aF~~l~~LRrLdLS~-N~Is~I---~p~AF~GL~~l~~Lvlyg~NkI~~l~k~----~F~gL----~slqrLllNa 149 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSK-NNISFI---APDAFKGLASLLSLVLYGNNKITDLPKG----AFGGL----SSLQRLLLNA 149 (498)
T ss_pred CChhhccchhhhceecccc-cchhhc---ChHhhhhhHhhhHHHhhcCCchhhhhhh----HhhhH----HHHHHHhcCh
Confidence 4555555566666666666 556655 5555566666666666555556666553 34444 5555555554
Q ss_pred Ccccccc-ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhc----------cCCCcc
Q 008856 131 CEGLVKL-PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCD----------TNSSLE 197 (551)
Q Consensus 131 ~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~----------~~~~L~ 197 (551)
| .+..+ ...+..+++|..|.+.+ +.+..++. +..+..++.++++.++.+.+=...|... +.....
T Consensus 150 n-~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 150 N-HINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred h-hhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 3 22322 23455666777777666 34555543 3345666666666554221100000000 000000
Q ss_pred EEEEecCCCcceeccccCCCCccEEE---EecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCch
Q 008856 198 ILSIHGCRSLTYIAAVQLPSSLKMLT---IWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELP 274 (551)
Q Consensus 198 ~L~l~~~~~~~~~~~~~~~~~L~~L~---l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 274 (551)
...+.+ ..+..+....+...++.+- .+.|. ++......-|+. +++|+.|++++ ++++. +..+.|-
T Consensus 228 p~rl~~-~Ri~q~~a~kf~c~~esl~s~~~~~d~-------~d~~cP~~cf~~--L~~L~~lnlsn-N~i~~-i~~~aFe 295 (498)
T KOG4237|consen 228 PYRLYY-KRINQEDARKFLCSLESLPSRLSSEDF-------PDSICPAKCFKK--LPNLRKLNLSN-NKITR-IEDGAFE 295 (498)
T ss_pred hHHHHH-HHhcccchhhhhhhHHhHHHhhccccC-------cCCcChHHHHhh--cccceEeccCC-Cccch-hhhhhhc
Confidence 000000 1111111111211222220 01110 111111111111 55788888888 67766 3333222
Q ss_pred hhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecC
Q 008856 275 ATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGS 344 (551)
Q Consensus 275 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~ 344 (551)
. + ..+++|.+..|..-..-...|.++.+|+.|++++ +.++.+ |..+....+|.+|.+-.
T Consensus 296 ~----~------a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 296 G----A------AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred c----h------hhhhhhhcCcchHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehcc
Confidence 2 1 1488888988865555566788899999999999 777776 77777788888888764
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-13 Score=112.84 Aligned_cols=157 Identities=24% Similarity=0.333 Sum_probs=90.9
Q ss_pred CCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccC-CcCCCcceeEe
Q 008856 334 LHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVI 411 (551)
Q Consensus 334 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l 411 (551)
+.....|.+++ ++++.+|.....+.+|+.|++.+ ++++.+|..++.+++|+.|+++. .+..+|.+ +.+|.|+.||+
T Consensus 32 ~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 34444444444 34444444333333455555544 44555555555555555555555 44444443 44566666666
Q ss_pred cCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCC
Q 008856 412 RGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRN 491 (551)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 491 (551)
.+|..-....+.- |..+..|+-|++++|. ++.+|.+.+ .+++|+.|.+++ +.+-.+|..+..+.+
T Consensus 110 tynnl~e~~lpgn---ff~m~tlralyl~dnd----fe~lp~dvg-------~lt~lqil~lrd-ndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 110 TYNNLNENSLPGN---FFYMTTLRALYLGDND----FEILPPDVG-------KLTNLQILSLRD-NDLLSLPKEIGDLTR 174 (264)
T ss_pred cccccccccCCcc---hhHHHHHHHHHhcCCC----cccCChhhh-------hhcceeEEeecc-CchhhCcHHHHHHHH
Confidence 5555333333322 4456677777777763 667777663 567777777777 677777777777788
Q ss_pred cCEEEEcCCCCccccCC
Q 008856 492 LTELVLRGCPKLKYFPE 508 (551)
Q Consensus 492 L~~L~l~~c~~l~~l~~ 508 (551)
|++|+|.+ ++++-+|.
T Consensus 175 lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 175 LRELHIQG-NRLTVLPP 190 (264)
T ss_pred HHHHhccc-ceeeecCh
Confidence 88888887 56776655
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-12 Score=117.77 Aligned_cols=220 Identities=17% Similarity=0.220 Sum_probs=125.2
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 366 (551)
|+.|++++|.+....+++|.++++|.+|-+.+.++++++|. .+..+.+|+.|.+.- +.+..++. ....++++..|.+
T Consensus 93 LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 93 LRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred hceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcc
Confidence 55555555554444555555555555555555555555543 233455555555443 22222222 1222346677777
Q ss_pred ccCcccccccc-ccccCCcccceeccc-c------cccc-------c-----------------------cCCcCCCcce
Q 008856 367 YDCKRLKALPK-GLHNLSTLQDLTIGG-A------LLSL-------E-----------------------EDGLPTNLHS 408 (551)
Q Consensus 367 ~~c~~l~~~~~-~~~~l~~L~~L~l~~-~------l~~l-------~-----------------------~~~~~~~L~~ 408 (551)
.+ +.+..++. .+..+..++.+.+.. . +... + ...+.-.++.
T Consensus 172 yD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es 250 (498)
T KOG4237|consen 172 YD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES 250 (498)
T ss_pred cc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence 66 55666665 455666666665543 1 1000 0 0000001222
Q ss_pred e--EecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hh
Q 008856 409 L--VIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SS 485 (551)
Q Consensus 409 L--~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~ 485 (551)
+ .+......+...|..- +..+++|++|++++|. +..+.+.. |.....+++|.+.. |+++.+. .-
T Consensus 251 l~s~~~~~d~~d~~cP~~c--f~~L~~L~~lnlsnN~----i~~i~~~a------Fe~~a~l~eL~L~~-N~l~~v~~~~ 317 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPAKC--FKKLPNLRKLNLSNNK----ITRIEDGA------FEGAAELQELYLTR-NKLEFVSSGM 317 (498)
T ss_pred HHHhhccccCcCCcChHHH--HhhcccceEeccCCCc----cchhhhhh------hcchhhhhhhhcCc-chHHHHHHHh
Confidence 2 1112222222333332 7789999999999983 66666644 34678999999999 8999887 45
Q ss_pred ccCCCCcCEEEEcCCCCccccCCCCC--ccccceEeecCCc
Q 008856 486 IIDLRNLTELVLRGCPKLKYFPEKGL--PSSLLELWISGCP 524 (551)
Q Consensus 486 ~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 524 (551)
+.++..|++|++++ ++++.+....+ ..+|.+|.+-.+|
T Consensus 318 f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 78899999999999 77888755333 4567777766554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-11 Score=119.66 Aligned_cols=130 Identities=21% Similarity=0.219 Sum_probs=63.0
Q ss_pred CccEEEEccCccc----cccccccccCCcccceeccc-cccc-----ccc-CCcCCCcceeEecCCchhhhhhhhhcccc
Q 008856 360 KLTALEIYDCKRL----KALPKGLHNLSTLQDLTIGG-ALLS-----LEE-DGLPTNLHSLVIRGNMEIWKSMIEWGRGF 428 (551)
Q Consensus 360 ~L~~L~l~~c~~l----~~~~~~~~~l~~L~~L~l~~-~l~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 428 (551)
+|+.|++++|... ..++..+..+++|+.|++++ .+.. ++. ....++|++|++++|..-..........+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 5666666654321 12233344555666666655 3321 111 11235777777777763322221111124
Q ss_pred ccCCCccEEEEeccCCCCcccc-----cccccccccccccccccccccccccCCChh-----hhhhhccCCCCcCEEEEc
Q 008856 429 HRFSSLRHLTIDGCDDDTMMVS-----FPLEDKRLGTVLRLPTTLTSLRIEDFPNLE-----RLSSSIIDLRNLTELVLR 498 (551)
Q Consensus 429 ~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L~l~ 498 (551)
..+++|++|++++|. +.. +.... ....+.|++|++++| .++ .+...+..+++|++++++
T Consensus 218 ~~~~~L~~L~ls~n~----l~~~~~~~l~~~~------~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 218 ASLKSLEVLNLGDNN----LTDAGAAALASAL------LSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred cccCCCCEEecCCCc----CchHHHHHHHHHH------hccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECC
Confidence 556777777777762 221 11110 001256777777764 442 223344555677777777
Q ss_pred CC
Q 008856 499 GC 500 (551)
Q Consensus 499 ~c 500 (551)
+|
T Consensus 287 ~N 288 (319)
T cd00116 287 GN 288 (319)
T ss_pred CC
Confidence 73
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-10 Score=125.87 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=63.3
Q ss_pred CCCccEEEecCCCC-chhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 59 IPKLEELKINNIQN-ETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
+++|++|-+.+... +..+ ...+|..+|.|++|++++|..+..+|.. ++.+ -+|++|++++ +.+..+
T Consensus 544 ~~~L~tLll~~n~~~l~~i---s~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~-t~I~~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI---SGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSD-TGISHL 610 (889)
T ss_pred CCccceEEEeecchhhhhc---CHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccC-CCcccc
Confidence 45666666666321 3433 4444566666777777666666666654 5555 6666666666 455666
Q ss_pred ccccCCCCCCceEEEccCCCCcccCCCC-CCCCCcEEEccC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPEVA-LPSKLKKIQIGE 177 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~L~~L~l~~ 177 (551)
|.++.++..|.+|++..+..+..++.+. .+++|++|.+..
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 6666666667777666655555554432 266666666644
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-10 Score=115.30 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=34.5
Q ss_pred CccEEEeccCcch----hhhHhhhcCCCCCcEEEEecCCCcccc-----cccccCC-CCcceEEecCC
Q 008856 288 SLKSLRVRYCSKL----ESIAERLDNNTSLETISIYNCENLKIL-----PSGLHKL-HQLREISIGSC 345 (551)
Q Consensus 288 ~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~-~~L~~L~l~~~ 345 (551)
.|++|++++|... ..+...+..+++|+.+++++ +.+..- ...+... +.|+++++.++
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 4778888777543 23344555667888888888 444422 2233334 67787777663
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.2e-10 Score=122.82 Aligned_cols=128 Identities=22% Similarity=0.235 Sum_probs=92.0
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCcc-ccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPK-LQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
....++..+.+ +.+..+ +.. ..+++|++|-+.++.. +..++.+ .+..+ |.|+.||+++|..+.++
T Consensus 522 ~~~~rr~s~~~-~~~~~~---~~~--~~~~~L~tLll~~n~~~l~~is~~----ff~~m----~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 522 WNSVRRMSLMN-NKIEHI---AGS--SENPKLRTLLLQRNSDWLLEISGE----FFRSL----PLLRVLDLSGNSSLSKL 587 (889)
T ss_pred hhheeEEEEec-cchhhc---cCC--CCCCccceEEEeecchhhhhcCHH----HHhhC----cceEEEECCCCCccCcC
Confidence 45667777776 455544 322 3466888888887542 5555543 25656 89999999988888889
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEec
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHG 203 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 203 (551)
|..++.+-+||+|+++++ .++.+|. +.++.+|.+|++..+..+..++... ..+++|++|.+..
T Consensus 588 P~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPR 651 (889)
T ss_pred ChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchh--hhcccccEEEeec
Confidence 988999999999999884 6778887 6778889999988877666664431 2247888888876
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-11 Score=102.84 Aligned_cols=146 Identities=26% Similarity=0.377 Sum_probs=88.8
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
+..|.+++| .++.++..+..+.+|+.|++++ +.++++|..+.+++.|+.|.+.- +.+..+|.++..+|.|+.|++.+
T Consensus 35 ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccc
Confidence 666667776 3455556666777777777777 66777777777777777777765 56666677666677777777777
Q ss_pred Ccc-ccccccccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 369 CKR-LKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 369 c~~-l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++- -..+|..|..++.|+.|++++ +.+.+|.. +.+.+|+-|.+.+|..+. ...+ +..+.+|++|.|.+|
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpke----ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKE----IGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHH----HHHHHHHHHHhcccc
Confidence 431 234566666677777777766 55555543 444555555555554322 1111 334445555555544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.5e-08 Score=94.64 Aligned_cols=94 Identities=30% Similarity=0.588 Sum_probs=63.5
Q ss_pred hhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcc
Q 008856 306 RLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTL 385 (551)
Q Consensus 306 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L 385 (551)
.+..+.++++|++++| .+..+|. -.++|++|.+++|..++.+|... +++|+.|++++|..+..+|. +|
T Consensus 47 r~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 47 QIEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 3455688999999987 6777762 23469999999998888887533 24899999999877777765 35
Q ss_pred cceeccc-cccccccCCcCCCcceeEecC
Q 008856 386 QDLTIGG-ALLSLEEDGLPTNLHSLVIRG 413 (551)
Q Consensus 386 ~~L~l~~-~l~~l~~~~~~~~L~~L~l~~ 413 (551)
+.|++.. ....++ ..+++|++|.+.+
T Consensus 115 e~L~L~~n~~~~L~--~LPssLk~L~I~~ 141 (426)
T PRK15386 115 RSLEIKGSATDSIK--NVPNGLTSLSINS 141 (426)
T ss_pred ceEEeCCCCCcccc--cCcchHhheeccc
Confidence 5555644 222222 2345677777644
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-09 Score=101.82 Aligned_cols=210 Identities=17% Similarity=0.227 Sum_probs=119.1
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+.+|+...+.+|+-..-. .....+.|++++.|++++ ++-.-|.....+...+|+|+.|+++.+ ++.....+..
T Consensus 120 ~kkL~~IsLdn~~V~~~~---~~~~~k~~~~v~~LdLS~--NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~- 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAG---IEEYSKILPNVRDLDLSR--NLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNT- 192 (505)
T ss_pred HHhhhheeecCccccccc---hhhhhhhCCcceeecchh--hhHHhHHHHHHHHHhcccchhcccccc-cccCCccccc-
Confidence 777888888877644311 113556788888888887 344346666666777888888888874 4554433311
Q ss_pred hhhhhhhccCCCccEEecccCccc-cccccccCCCCCCceEEEccCCCCc-ccCCCCCCCCCcEEEccCCCCccccchhh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGL-VKLPQSSFSLSSLREIEIFKCSSLV-SFPEVALPSKLKKIQIGECDALKSLPEAW 188 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (551)
....++|+.|.+++|..- ..+......||+|+.|++..+..+. ...+...+..|++|+++++..+ +++...
T Consensus 193 ------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~ 265 (505)
T KOG3207|consen 193 ------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGY 265 (505)
T ss_pred ------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccc
Confidence 112378888888887421 2333344567788888887753221 2222344677888888876533 333222
Q ss_pred hhccCCCccEEEEecCCCcceec--c------ccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEec
Q 008856 189 MCDTNSSLEILSIHGCRSLTYIA--A------VQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRY 260 (551)
Q Consensus 189 ~~~~~~~L~~L~l~~~~~~~~~~--~------~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 260 (551)
....++.|..|+++.|. +.++. . ...+++|+.|.+.++ ++..+ ..+.+ ..+.++|++|.+..
T Consensus 266 ~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w---~sl~~-----l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDW---RSLNH-----LRTLENLKHLRITL 335 (505)
T ss_pred ccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccC-ccccc---cccch-----hhccchhhhhhccc
Confidence 22444777777777642 22221 1 145678888888774 44332 22221 12245677776554
Q ss_pred CCCCc
Q 008856 261 CPSLT 265 (551)
Q Consensus 261 c~~l~ 265 (551)
+.+.
T Consensus 336 -n~ln 339 (505)
T KOG3207|consen 336 -NYLN 339 (505)
T ss_pred -cccc
Confidence 4443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-09 Score=100.64 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=97.0
Q ss_pred CCCCccEEEecCCCCchhhcccCc-chhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHN-ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK 136 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~ 136 (551)
++.+|+++.+.++ .+... +. +....|++++.|+++.+ -+..+.+ +..+++.+|+|+.|+++.|. +..
T Consensus 119 n~kkL~~IsLdn~-~V~~~---~~~~~~k~~~~v~~LdLS~N-L~~nw~~------v~~i~eqLp~Le~LNls~Nr-l~~ 186 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDA---GIEEYSKILPNVRDLDLSRN-LFHNWFP------VLKIAEQLPSLENLNLSSNR-LSN 186 (505)
T ss_pred hHHhhhheeecCc-ccccc---chhhhhhhCCcceeecchhh-hHHhHHH------HHHHHHhcccchhccccccc-ccC
Confidence 4667777777773 34433 11 23456777777777763 3444422 45555555777777777643 221
Q ss_pred ccc--ccCCCCCCceEEEccCCCCc--ccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcc--e
Q 008856 137 LPQ--SSFSLSSLREIEIFKCSSLV--SFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLT--Y 209 (551)
Q Consensus 137 ~~~--~~~~l~~L~~L~l~~c~~l~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~--~ 209 (551)
... .-..+++|+.|.++.|. ++ ++.. ...+|+|+.|.+++|..+..... .......|+.|+++++..+. .
T Consensus 187 ~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 187 FISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred CccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCccccccc
Confidence 111 11246677777777773 22 1111 33467777777777642211110 00122557777777754332 1
Q ss_pred eccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcc
Q 008856 210 IAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTC 266 (551)
Q Consensus 210 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 266 (551)
++..+.+++|+.|.++.+ .+.++.+|+.-.. ...-++++|++|.+.. +.+.+
T Consensus 264 ~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~---~kt~~f~kL~~L~i~~-N~I~~ 315 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSST-GIASIAEPDVESL---DKTHTFPKLEYLNISE-NNIRD 315 (505)
T ss_pred ccccccccchhhhhcccc-CcchhcCCCccch---hhhcccccceeeeccc-Ccccc
Confidence 233355677777777664 4555544443000 0011255677777776 44433
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-09 Score=98.10 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=92.5
Q ss_pred CccEEEeccCcch-hhhHhhhcCCCCCcEEEEecCCCcc-cccccccCCCCcceEEecCCCCCccCCC--CCCCCCCccE
Q 008856 288 SLKSLRVRYCSKL-ESIAERLDNNTSLETISIYNCENLK-ILPSGLHKLHQLREISIGSCGNLVSFPG--GGLPCAKLTA 363 (551)
Q Consensus 288 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~ 363 (551)
.|++||+++..+. ..+...+..|.+|+.|.+.+ ..+. .+...+.+-.+|+.|+++.|.++++... ....+..|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4777777765432 23445566777777777777 3343 3345566667777777777777765433 3334557777
Q ss_pred EEEccCccccccccc-ccc-CCcccceeccc-----cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCcc
Q 008856 364 LEIYDCKRLKALPKG-LHN-LSTLQDLTIGG-----ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLR 435 (551)
Q Consensus 364 L~l~~c~~l~~~~~~-~~~-l~~L~~L~l~~-----~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 435 (551)
|++++|...+..... +.+ -++|+.|++++ ....+... ..+|+|.+|||++|..+..-.... +..++.|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~---~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---FFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH---HHhcchhe
Confidence 777777543332111 111 25677777777 11222221 357888888888888776432221 66788888
Q ss_pred EEEEeccC
Q 008856 436 HLTIDGCD 443 (551)
Q Consensus 436 ~L~l~~~~ 443 (551)
+|.++.|+
T Consensus 342 ~lSlsRCY 349 (419)
T KOG2120|consen 342 HLSLSRCY 349 (419)
T ss_pred eeehhhhc
Confidence 88888885
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-09 Score=95.31 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=28.1
Q ss_pred ccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC---CCCCCCCcEEEccCCC
Q 008856 118 QLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE---VALPSKLKKIQIGECD 179 (551)
Q Consensus 118 ~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~ 179 (551)
..|.+|+.|++.|+.--..+...+..-..|+.|+++.|+.++.... +..++.|.+|++++|.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 3445555555555322222223333344555555555544443332 2335555555555554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.2e-08 Score=84.93 Aligned_cols=126 Identities=20% Similarity=0.294 Sum_probs=39.5
Q ss_pred CCCcEEEEecCCCccccccccc-CCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccccccc-ccCCcccce
Q 008856 311 TSLETISIYNCENLKILPSGLH-KLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGL-HNLSTLQDL 388 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~l~~L~~L 388 (551)
..++.|++++ +.++.+ ..++ .+.+|+.|++++ +.++.+... ..++.|++|++++ +.++++.+.+ ..+++|+.|
T Consensus 19 ~~~~~L~L~~-n~I~~I-e~L~~~l~~L~~L~Ls~-N~I~~l~~l-~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRG-NQISTI-ENLGATLDKLEVLDLSN-NQITKLEGL-PGLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TT-S--S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred cccccccccc-cccccc-cchhhhhcCCCEEECCC-CCCccccCc-cChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence 3455555555 444444 2233 345556666655 344444321 1233566666665 4455554333 246666666
Q ss_pred eccc-cccc---cccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 389 TIGG-ALLS---LEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 389 ~l~~-~l~~---l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++++ .+.. +.....+++|++|++.+|+.-.. ......++..+|+|+.||-...
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 6666 3333 33334578888888888885432 2222223567888888875544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.7e-08 Score=87.90 Aligned_cols=128 Identities=18% Similarity=0.276 Sum_probs=70.2
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEE
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLT 438 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 438 (551)
.|+++++++ +.++.+.++..-.+.++.|+++. .+..+.....+++|+.||+++|.... ...| -..+.|.+.|.
T Consensus 285 ~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~--~~Gw---h~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE--CVGW---HLKLGNIKTLK 358 (490)
T ss_pred hhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh--hhhh---HhhhcCEeeee
Confidence 444455544 33444444444444555555555 44444444445666666666665222 2222 23566777777
Q ss_pred EeccCCCCcccccccccccccccccccccccccccccCCChhhhh--hhccCCCCcCEEEEcCCCCccccC
Q 008856 439 IDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS--SSIIDLRNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 439 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~l~ 507 (551)
+++|- ++.++.-. -+-+|..|++++ |+++.+. ..+.++|.|+++.+.++| ++.++
T Consensus 359 La~N~----iE~LSGL~--------KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 359 LAQNK----IETLSGLR--------KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhhhh----HhhhhhhH--------hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 77662 44444433 345677777777 6666654 456777888888887755 44433
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-08 Score=89.87 Aligned_cols=134 Identities=18% Similarity=0.159 Sum_probs=79.2
Q ss_pred ccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccC-CcCCCcce
Q 008856 331 LHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHS 408 (551)
Q Consensus 331 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~ 408 (551)
+.....|+++|+++ +.++.+.......|.++.|++++ +.++.+.. ++.+++|+.|++++ .+..+... ..+.|.+.
T Consensus 280 ~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccc-cchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 34456677777777 56666666656666777777777 44555533 66777777777777 55555443 23567777
Q ss_pred eEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh
Q 008856 409 LVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS 483 (551)
Q Consensus 409 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 483 (551)
|.+.+|..-+- ++ ++.+-+|+.|++++|. .+++.....-. .+|-|+.+.+.+ |-+..++
T Consensus 357 L~La~N~iE~L----SG--L~KLYSLvnLDl~~N~-Ie~ldeV~~IG--------~LPCLE~l~L~~-NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIETL----SG--LRKLYSLVNLDLSSNQ-IEELDEVNHIG--------NLPCLETLRLTG-NPLAGSV 415 (490)
T ss_pred eehhhhhHhhh----hh--hHhhhhheeccccccc-hhhHHHhcccc--------cccHHHHHhhcC-CCccccc
Confidence 77777763221 11 4556677777777762 22222222222 456777777777 4444443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-07 Score=83.04 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=32.4
Q ss_pred CCCccEEEecCCCCchhhcccCcchhc-ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQ-DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
..++++|++++ +.++.+ +.++ .+.+|+.|++++| .++.+.. +..+ ++|+.|++++| .+..+
T Consensus 18 ~~~~~~L~L~~-n~I~~I-----e~L~~~l~~L~~L~Ls~N-~I~~l~~------l~~L----~~L~~L~L~~N-~I~~i 79 (175)
T PF14580_consen 18 PVKLRELNLRG-NQISTI-----ENLGATLDKLEVLDLSNN-QITKLEG------LPGL----PRLKTLDLSNN-RISSI 79 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS---S--TT--------------TT--EEE--SS----S-
T ss_pred ccccccccccc-cccccc-----cchhhhhcCCCEEECCCC-CCccccC------ccCh----hhhhhcccCCC-CCCcc
Confidence 45677888887 456655 1233 4677888888875 4776633 5555 78888888874 55556
Q ss_pred cccc-CCCCCCceEEEccCCCCcccCC---CCCCCCCcEEEccCCC
Q 008856 138 PQSS-FSLSSLREIEIFKCSSLVSFPE---VALPSKLKKIQIGECD 179 (551)
Q Consensus 138 ~~~~-~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~ 179 (551)
+..+ ..+++|++|++++ +++..+.. ++.+++|++|++.+|+
T Consensus 80 ~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 5444 3577888888876 45544433 4557888888888766
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-08 Score=101.15 Aligned_cols=167 Identities=22% Similarity=0.340 Sum_probs=103.4
Q ss_pred cEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccC
Q 008856 290 KSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDC 369 (551)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 369 (551)
...+++.|. ...++..+..+..|+.+.++. +.+..+|..+..+..|.+++++. +.+..+|.....+ -|+.|-+++
T Consensus 78 ~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sN- 152 (722)
T KOG0532|consen 78 VFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSN- 152 (722)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEec-
Confidence 344566553 345556666667777777777 66778888888888888888888 5677777655545 578888887
Q ss_pred ccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcc
Q 008856 370 KRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMM 448 (551)
Q Consensus 370 ~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 448 (551)
++++.+|+.++.+.+|..|+.+. .+.+++.. +.++.+|+.|.+..|. +
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsq---------------------------l~~l~slr~l~vrRn~----l 201 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ---------------------------LGYLTSLRDLNVRRNH----L 201 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHH---------------------------hhhHHHHHHHHHhhhh----h
Confidence 77888888777777777776665 55555442 3344444444444442 4
Q ss_pred cccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 449 VSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
..+|++. .--.|..||+++ |++..+|..+.+++.|++|.+..+|
T Consensus 202 ~~lp~El--------~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 202 EDLPEEL--------CSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhCCHHH--------hCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC
Confidence 4444433 112355555554 5555555555555555555555533
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-06 Score=83.36 Aligned_cols=71 Identities=24% Similarity=0.525 Sum_probs=39.1
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCC
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVA 165 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 165 (551)
.+.+++.|++++| .++.+|. .+++|++|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~------------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV------------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC------------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc---
Confidence 3566666666666 4555442 12456666666666665555433 2456666666665544333
Q ss_pred CCCCCcEEEcc
Q 008856 166 LPSKLKKIQIG 176 (551)
Q Consensus 166 ~~~~L~~L~l~ 176 (551)
++|+.|.+.
T Consensus 112 --~sLe~L~L~ 120 (426)
T PRK15386 112 --ESVRSLEIK 120 (426)
T ss_pred --cccceEEeC
Confidence 345555554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.1e-07 Score=91.03 Aligned_cols=170 Identities=25% Similarity=0.349 Sum_probs=107.3
Q ss_pred CCCCcEEEEecCCCcccccccccCCC-CcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccce
Q 008856 310 NTSLETISIYNCENLKILPSGLHKLH-QLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDL 388 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L 388 (551)
++.++.|.+.+ +.+.+++....... +|+.|++++ +.+..++.....+++|+.|++++ +.+.+++.....++.|+.|
T Consensus 115 ~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhhe
Confidence 35666777766 55666655555553 777777777 45656543334445777777777 4466666655567777777
Q ss_pred eccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccc
Q 008856 389 TIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPT 466 (551)
Q Consensus 389 ~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (551)
++++ .+..++.. +.+..|++|.+++|+....... +..+.++..+.+.++. +..++... ..++
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~-----~~~~~~l~~l~l~~n~----~~~~~~~~-------~~l~ 255 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS-----LSNLKNLSGLELSNNK----LEDLPESI-------GNLS 255 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchh-----hhhcccccccccCCce----eeeccchh-------cccc
Confidence 7777 77777765 3455688888877753332211 4566667777666652 33323322 2456
Q ss_pred cccccccccCCChhhhhhhccCCCCcCEEEEcCC
Q 008856 467 TLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 467 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 500 (551)
++++|++++ +.+.+++. +..+.+|+.+++++.
T Consensus 256 ~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 256 NLETLDLSN-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccceecccc-cccccccc-ccccCccCEEeccCc
Confidence 788888887 67777765 677788888888873
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.9e-07 Score=82.95 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=34.4
Q ss_pred CccEEEeccCcchhh----hHhhhcCCCCCcEEEEecCCC---ccccc-------ccccCCCCcceEEecCC
Q 008856 288 SLKSLRVRYCSKLES----IAERLDNNTSLETISIYNCEN---LKILP-------SGLHKLHQLREISIGSC 345 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---l~~~~-------~~~~~~~~L~~L~l~~~ 345 (551)
+++++++++|..-.. +...+...++|+..++++.-. ...+| ..+..++.|++|++|+|
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 478888888865432 344556667777777766310 11222 23345667888888774
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.3e-06 Score=87.31 Aligned_cols=189 Identities=24% Similarity=0.276 Sum_probs=137.6
Q ss_pred EEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCC-CccEEEEccCccccccccccccCCcccceeccc-
Q 008856 315 TISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCA-KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG- 392 (551)
Q Consensus 315 ~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~- 392 (551)
.+.... +.+..-...+..++.++.|++.+ +.+..++....... +|+.|++++ +.+..+|..+..+++|+.|+++.
T Consensus 97 ~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNL-NRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccc-cccccCchhhhcccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc
Confidence 455555 33322223344557889999988 67777777666663 899999998 77888877789999999999999
Q ss_pred cccccccCC-cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccccccc
Q 008856 393 ALLSLEEDG-LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSL 471 (551)
Q Consensus 393 ~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 471 (551)
.+..++... ..++|+.|++++|.... +... ......|+++.++++. . +.....-. ...++..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~----~~~~~~L~~l~~~~N~-~--~~~~~~~~--------~~~~l~~l 237 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISD-LPPE----IELLSALEELDLSNNS-I--IELLSSLS--------NLKNLSGL 237 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCcccc-Cchh----hhhhhhhhhhhhcCCc-c--eecchhhh--------hccccccc
Confidence 888888875 78999999999998433 2221 1234459999999982 2 22232221 45677777
Q ss_pred ccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCc
Q 008856 472 RIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 472 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
.+.+ +.+..++..+..+++++.|++++ +.++.++..+...+++.|++++..
T Consensus 238 ~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 238 ELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCcc
Confidence 7666 77777677788899999999999 678888775556899999998854
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.9e-06 Score=59.19 Aligned_cols=59 Identities=29% Similarity=0.408 Sum_probs=35.1
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccC
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYC 131 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~ 131 (551)
|+|++|++++ +.++.+ +...|..+++|++|+++++ .++.+++. .+..+ ++|++|++++|
T Consensus 1 p~L~~L~l~~-n~l~~i---~~~~f~~l~~L~~L~l~~N-~l~~i~~~----~f~~l----~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEI---PPDSFSNLPNLETLDLSNN-NLTSIPPD----AFSNL----PNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETS-STESEE---CTTTTTTGTTESEEEETSS-SESEEETT----TTTTS----TTESEEEETSS
T ss_pred CcCcEEECCC-CCCCcc---CHHHHcCCCCCCEeEccCC-ccCccCHH----HHcCC----CCCCEEeCcCC
Confidence 4566666666 356655 5555666666666666653 46666553 24444 66666666664
|
... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.2e-07 Score=94.69 Aligned_cols=66 Identities=29% Similarity=0.360 Sum_probs=30.0
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc--ccccccCCCCCCceEEEccCCCC
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV--KLPQSSFSLSSLREIEIFKCSSL 158 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l 158 (551)
.+++|+.|++.+|..+++ .++..++..+++|++|.+.+|..++ .+......+++|++|++++|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd-------~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTD-------IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCc-------hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 345555555555443333 2233333344555555555554322 12222334555555555555443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-07 Score=91.63 Aligned_cols=187 Identities=21% Similarity=0.306 Sum_probs=137.4
Q ss_pred EEecCCCcccccccccC--CCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-c
Q 008856 317 SIYNCENLKILPSGLHK--LHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-A 393 (551)
Q Consensus 317 ~l~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~ 393 (551)
.|++ ..++.+|..-.+ +.--...+++. +.+..+|.....+-.|+.+.+.. +.++.+|+.+.++..|..++++. .
T Consensus 56 ~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsr-NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 56 LLSG-RRLKEFPRGAASYDLTDTVFADLSR-NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccc-chhhcCCCccccccccchhhhhccc-cccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccch
Confidence 3444 445555433222 23334455666 56666776555555777777765 55778888899999999999988 8
Q ss_pred ccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccccccccc
Q 008856 394 LLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRI 473 (551)
Q Consensus 394 l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 473 (551)
+..+|...+.--|+.|.+++|. +....++ +...+.|..|+++.|. +..+|.+.+ .+.+|+.|.+
T Consensus 133 lS~lp~~lC~lpLkvli~sNNk-l~~lp~~----ig~~~tl~~ld~s~ne----i~slpsql~-------~l~slr~l~v 196 (722)
T KOG0532|consen 133 LSHLPDGLCDLPLKVLIVSNNK-LTSLPEE----IGLLPTLAHLDVSKNE----IQSLPSQLG-------YLTSLRDLNV 196 (722)
T ss_pred hhcCChhhhcCcceeEEEecCc-cccCCcc----cccchhHHHhhhhhhh----hhhchHHhh-------hHHHHHHHHH
Confidence 8888887555579999999888 4434444 5577899999999994 888887663 6789999999
Q ss_pred ccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC-CccccceEeecCCch
Q 008856 474 EDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG-LPSSLLELWISGCPL 525 (551)
Q Consensus 474 ~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~i~~c~~ 525 (551)
+. +.+.++|..+.. -.|.+|+++. +++..+|... -+..|++|-+.++|-
T Consensus 197 rR-n~l~~lp~El~~-LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 197 RR-NHLEDLPEELCS-LPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hh-hhhhhCCHHHhC-Cceeeeeccc-CceeecchhhhhhhhheeeeeccCCC
Confidence 99 899999977764 4588999997 8999999853 367899999999863
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.3e-06 Score=78.16 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=77.7
Q ss_pred hhhccCCCCcceEEeCCCCCcc--------ccccccccceeeeccccCcccceec---------cCCcCCCCCCccEEEe
Q 008856 5 VISITSLPALCKMEIGGCKKVV--------WRSATDHLGSQNSVVCRDASNQVFL---------AGPLKPRIPKLEELKI 67 (551)
Q Consensus 5 ~~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~---------~~~~~~~~~~L~~L~l 67 (551)
..|+...|.|++|+|++|-.-. +......|+.|.+.+|......... ...-...-+.||.+..
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 4456666677777777653211 2233555677777776544331111 1111223456666666
Q ss_pred cCCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc----ccccccC
Q 008856 68 NNIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV----KLPQSSF 142 (551)
Q Consensus 68 ~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~----~~~~~~~ 142 (551)
.+ +.+.+- -...+..+...+.|+.+.+..+. +..=...-.+.++. .+++|+.|||+.|..-. .+...+.
T Consensus 165 ~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~----~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 165 GR-NRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALE----HCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred ec-cccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHH----hCCcceeeecccchhhhHHHHHHHHHhc
Confidence 65 333322 00011233455666666666532 32111111112222 33666666666643221 1233455
Q ss_pred CCCCCceEEEccCCCCcccC-----C--CCCCCCCcEEEccCCC
Q 008856 143 SLSSLREIEIFKCSSLVSFP-----E--VALPSKLKKIQIGECD 179 (551)
Q Consensus 143 ~l~~L~~L~l~~c~~l~~~~-----~--~~~~~~L~~L~l~~~~ 179 (551)
.+++|++|++++|. ++.-. . -...|.|+.+.+.+|.
T Consensus 239 s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 239 SWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred ccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 56666666666663 22111 0 1125566666666654
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.3e-06 Score=87.55 Aligned_cols=175 Identities=18% Similarity=0.245 Sum_probs=91.8
Q ss_pred hcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCccc
Q 008856 307 LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQ 386 (551)
Q Consensus 307 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 386 (551)
+..+.+|+.|++.+ +.+..+...+..+++|++|++++ +.++.+....... .|+.|++++ +.++.+. .+..++.|+
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~-~L~~L~l~~-N~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLT-LLKELNLSG-NLISDIS-GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheeccc-cccccccchhhcc-chhhheecc-Ccchhcc-CCccchhhh
Confidence 45566666666666 55655533356667777777776 4555544332222 466677766 3444442 344566666
Q ss_pred ceeccc-ccccccc--CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccc
Q 008856 387 DLTIGG-ALLSLEE--DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLR 463 (551)
Q Consensus 387 ~L~l~~-~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (551)
.+++++ .+..++. ...+.+++.+++.+|.....-. +..+..+..+++..+. +..+..-.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~------~~~~~~l~~~~l~~n~----i~~~~~l~-------- 227 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG------LDLLKKLVLLSLLDNK----ISKLEGLN-------- 227 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc------hHHHHHHHHhhccccc----ceeccCcc--------
Confidence 777766 5555544 2455677777777666433111 1222333333444431 22222211
Q ss_pred cccc--ccccccccCCChhhhhhhccCCCCcCEEEEcCCCCcccc
Q 008856 464 LPTT--LTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYF 506 (551)
Q Consensus 464 ~~~~--L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l 506 (551)
.... |+++++.+ +.+..++.++..+++++.+++.. +++..+
T Consensus 228 ~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~ 270 (414)
T KOG0531|consen 228 ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNL 270 (414)
T ss_pred cchhHHHHHHhccc-Cccccccccccccccccccchhh-cccccc
Confidence 1122 66666666 56665544555666666666665 444443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.3e-06 Score=89.84 Aligned_cols=115 Identities=22% Similarity=0.313 Sum_probs=56.1
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccC-ccccccc----cccCCCCCCceEEEccCCCCcc
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYC-EGLVKLP----QSSFSLSSLREIEIFKCSSLVS 160 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-~~l~~~~----~~~~~l~~L~~L~l~~c~~l~~ 160 (551)
.++.|+.|.+.+|..+... ++..+...+++|+.|+++++ ......+ .....+++|+.|+++.|..++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDD-------SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred hCchhhHhhhcccccCChh-------hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 3566666666665544431 12222233366666666552 1111111 1233445666666666554443
Q ss_pred cCC---CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCc
Q 008856 161 FPE---VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL 207 (551)
Q Consensus 161 ~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 207 (551)
... ...+++|+.|.+.+|..+++..........++|++|++++|..+
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 221 12256666666666665444443333334456667776666655
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=2e-05 Score=56.40 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=38.7
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCC
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSC 345 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~ 345 (551)
+|++|++++|.........|.++++|++|++++ +.+..+ +..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 477777777744333345667777788888876 566666 446677777777777775
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=9e-07 Score=90.67 Aligned_cols=123 Identities=24% Similarity=0.340 Sum_probs=92.2
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCC-CCCCCccEEEEc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGG-LPCAKLTALEIY 367 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~ 367 (551)
|...++++|. +..+-..+.-++.+++|+++. +++.++ ..+..++.|++||+++ +.+..+|... ..+ .|..|.++
T Consensus 166 L~~a~fsyN~-L~~mD~SLqll~ale~LnLsh-Nk~~~v-~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNR-LVLMDESLQLLPALESLNLSH-NKFTKV-DNLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred Hhhhhcchhh-HHhHHHHHHHHHHhhhhccch-hhhhhh-HHHHhccccccccccc-chhccccccchhhh-hheeeeec
Confidence 5555666663 344445566778999999999 778777 4788899999999999 6777777633 334 69999999
Q ss_pred cCccccccccccccCCcccceeccc----cccccccCCcCCCcceeEecCCchhh
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG----ALLSLEEDGLPTNLHSLVIRGNMEIW 418 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~----~l~~l~~~~~~~~L~~L~l~~~~~~~ 418 (551)
+ +.++.+ .++.++++|+.|++++ +-..+...+.+..|++|+|.||+...
T Consensus 241 n-N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 241 N-NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred c-cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8 567766 4588999999999998 33334444567899999999999543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.8e-05 Score=83.40 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=58.5
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
.+|++|+++|...+..-| +...-.-+|.|+.|.+.+- .+.. +.+..+...+|+|..||+++ .++..+ .
T Consensus 122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~-~~~~-------~dF~~lc~sFpNL~sLDIS~-TnI~nl-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGR-QFDN-------DDFSQLCASFPNLRSLDISG-TNISNL-S 189 (699)
T ss_pred HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCc-eecc-------hhHHHHhhccCccceeecCC-CCccCc-H
Confidence 466677776644444334 2222234677777777662 2322 22444455557777777776 344444 4
Q ss_pred ccCCCCCCceEEEccCCCCc--ccCCCCCCCCCcEEEccCCC
Q 008856 140 SSFSLSSLREIEIFKCSSLV--SFPEVALPSKLKKIQIGECD 179 (551)
Q Consensus 140 ~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~L~~L~l~~~~ 179 (551)
++.++++|+.|.+.+.+... .+-.+..+++|+.|++|+..
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 66667777777666543221 12224456677777776543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=1.5e-05 Score=81.50 Aligned_cols=192 Identities=20% Similarity=0.228 Sum_probs=119.6
Q ss_pred CCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccce
Q 008856 309 NNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDL 388 (551)
Q Consensus 309 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L 388 (551)
.+..++.+.++. +.+..+-..+..+++|+.+++.+ +.++.+......+++|++|++++ +.++.+ .++..++.|+.|
T Consensus 70 ~l~~l~~l~l~~-n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQ-NLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccch-hhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccc-cccccc-cchhhccchhhh
Confidence 445556666666 55555434467788999999998 56666555334455899999998 667776 347778889999
Q ss_pred eccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccc
Q 008856 389 TIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTT 467 (551)
Q Consensus 389 ~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (551)
++.+ .++.+.....+++|+.+++++|+.-..-. . . ...+.+++.++++++. +..+.... ....
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~-~--~-~~~~~~l~~l~l~~n~----i~~i~~~~--------~~~~ 209 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIEN-D--E-LSELISLEELDLGGNS----IREIEGLD--------LLKK 209 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhhhhh-h--h-hhhccchHHHhccCCc----hhcccchH--------HHHH
Confidence 9988 77777777668899999999988443221 0 0 1467788888888883 33333221 2233
Q ss_pred ccccccccCCChhhhhhhccCCCC--cCEEEEcCCCCcccc-CCCCCccccceEeecCC
Q 008856 468 LTSLRIEDFPNLERLSSSIIDLRN--LTELVLRGCPKLKYF-PEKGLPSSLLELWISGC 523 (551)
Q Consensus 468 L~~L~l~~~~~l~~~~~~~~~l~~--L~~L~l~~c~~l~~l-~~~~~~~~L~~L~i~~c 523 (551)
+..+.+.. +.+..+ .++..+.. |+++++.+ +.+..+ .......++..+++.+.
T Consensus 210 l~~~~l~~-n~i~~~-~~l~~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 210 LVLLSLLD-NKISKL-EGLNELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHhhccc-ccceec-cCcccchhHHHHHHhccc-Cccccccccccccccccccchhhc
Confidence 44444444 444433 23333333 88899988 445554 22223345555555543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0001 Score=79.11 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=88.2
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccc-cccccccCCCCCCceEEEccCCCCcccCCC
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGL-VKLPQSSFSLSSLREIEIFKCSSLVSFPEV 164 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 164 (551)
+-.+|++|++++...+.. +|....+..+|+|++|.+++-... ..+..-..+|++|..||++++ +++.+..+
T Consensus 120 sr~nL~~LdI~G~~~~s~-------~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GI 191 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSN-------GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGI 191 (699)
T ss_pred HHHhhhhcCccccchhhc-------cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHH
Confidence 346899999998554433 567777778899999999983221 134455678999999999995 67777667
Q ss_pred CCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCccee--c-----cccCCCCccEEEEec
Q 008856 165 ALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI--A-----AVQLPSSLKMLTIWY 226 (551)
Q Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-----~~~~~~~L~~L~l~~ 226 (551)
+.+++|+.|.+.+-. +...........+++|+.||++.-.....- . -...+|+|+.||.++
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 889999999886532 222221111133488999999874332221 0 114468888888876
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=9.1e-06 Score=83.56 Aligned_cols=102 Identities=26% Similarity=0.299 Sum_probs=50.8
Q ss_pred CCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhh
Q 008856 403 PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL 482 (551)
Q Consensus 403 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 482 (551)
++.|+.|+|+.|..-+.- . +..++.|++||+++|- +..+|.-.+ ---.|+.|.+++ |-++.+
T Consensus 186 l~ale~LnLshNk~~~v~--~----Lr~l~~LkhLDlsyN~----L~~vp~l~~-------~gc~L~~L~lrn-N~l~tL 247 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--N----LRRLPKLKHLDLSYNC----LRHVPQLSM-------VGCKLQLLNLRN-NALTTL 247 (1096)
T ss_pred HHHhhhhccchhhhhhhH--H----HHhcccccccccccch----hccccccch-------hhhhheeeeecc-cHHHhh
Confidence 455555666665532211 1 4455666666666552 444443110 111366666666 555555
Q ss_pred hhhccCCCCcCEEEEcCCCCccccCCC---CCccccceEeecCCc
Q 008856 483 SSSIIDLRNLTELVLRGCPKLKYFPEK---GLPSSLLELWISGCP 524 (551)
Q Consensus 483 ~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~ 524 (551)
- ++.++.+|+.|++++ |-+....+. ..+..|++|++.|+|
T Consensus 248 ~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 248 R-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 3 555666666666666 444443331 123456666666654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00065 Score=73.10 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=70.4
Q ss_pred CccEEeecCCcccc-ccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-CCC
Q 008856 89 SLKRLTITSCPKLQ-SLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE-VAL 166 (551)
Q Consensus 89 ~L~~L~l~~~~~l~-~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~ 166 (551)
.++.|+|+++. +. .+++. +..+ ++|+.|+|++|.....+|..+..+++|+.|+++++..-..+|. ++.
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~-----i~~L----~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPND-----ISKL----RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEEECCCCC-ccccCCHH-----HhCC----CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 36778888754 54 33332 6666 8888888888654447777788888888888888533334554 667
Q ss_pred CCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCc
Q 008856 167 PSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL 207 (551)
Q Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 207 (551)
+++|+.|++++|.-...+|.... ....++..+++.++..+
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCCEEECcCCcccccCChHHh-hccccCceEEecCCccc
Confidence 88888888888764445555422 11144567777776543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00067 Score=62.92 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=56.1
Q ss_pred CCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh
Q 008856 404 TNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS 483 (551)
Q Consensus 404 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 483 (551)
+.++.|..-+|......... +.-+-+|++..+.+..|+ ++....+- .+..++.+-.|.+.. +++.+..
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~P----lK~~s~ek-----~se~~p~~~~LnL~~-~~idswa 240 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEGP----LKTESSEK-----GSEPFPSLSCLNLGA-NNIDSWA 240 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecCc----ccchhhcc-----cCCCCCcchhhhhcc-cccccHH
Confidence 46666666677633211111 113467899999999884 44433211 011345666777776 5666543
Q ss_pred --hhccCCCCcCEEEEcCCCCccccCC
Q 008856 484 --SSIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 484 --~~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
+.+..|++|..|.+...|....+..
T Consensus 241 svD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred HHHHHcCCchhheeeccCCcccccccC
Confidence 5677899999999998886666543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00037 Score=45.75 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=30.7
Q ss_pred ccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccC
Q 008856 466 TTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 466 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 507 (551)
++|++|++++ ++++++|..+.++++|++|++++| .++.++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888 788888876889999999999995 576654
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00059 Score=44.76 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=14.9
Q ss_pred CccEEecccCccccccccccCCCCCCceEEEcc
Q 008856 122 RLEYLILSYCEGLVKLPQSSFSLSSLREIEIFK 154 (551)
Q Consensus 122 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~ 154 (551)
+|++|++++| .+..+|..+.++++|++|++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecC
Confidence 4455555552 3344444455555555555555
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00069 Score=72.92 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=61.0
Q ss_pred CcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc
Q 008856 313 LETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 313 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~ 392 (551)
++.|+++++.--..+|..+..+++|+.|++++|.-...+|.....+++|+.|++++|.-...+|+.+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666332234466666677777777776533335555444555777777776544445666677777777777766
Q ss_pred -ccc-ccccC--CcCCCcceeEecCCchh
Q 008856 393 -ALL-SLEED--GLPTNLHSLVIRGNMEI 417 (551)
Q Consensus 393 -~l~-~l~~~--~~~~~L~~L~l~~~~~~ 417 (551)
.+. .+|.. ....++..+++.+|+.+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 333 33332 12245567777777643
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00038 Score=64.48 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=88.6
Q ss_pred CCcceEEeCCCCCcc------ccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhc
Q 008856 12 PALCKMEIGGCKKVV------WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQ 85 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 85 (551)
..++++++.++.... +...+|+|+.|+++..+........|. +..+|+.|.+.| +.+. |......+.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~----p~~nl~~lVLNg-T~L~--w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL----PLKNLRVLVLNG-TGLS--WTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc----cccceEEEEEcC-CCCC--hhhhhhhhh
Confidence 456677777766555 222366677777766555544333331 356777777777 5666 666666666
Q ss_pred ccCCccEEeecCCcccccc--chhhhhhhhhhhhccCCCccEEecccCcccc--ccccccCCCCCCceEEEccCCCCccc
Q 008856 86 DICSLKRLTITSCPKLQSL--VAEEEKDQQQQLCQLSCRLEYLILSYCEGLV--KLPQSSFSLSSLREIEIFKCSSLVSF 161 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l--~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~~ 161 (551)
.+|+++.|.++.++ +..+ .+.. ... .-+.+++|.+.+|.... ..-.-..-||++..+-+..|+--+.-
T Consensus 144 ~lP~vtelHmS~N~-~rq~n~Dd~c----~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s 215 (418)
T KOG2982|consen 144 DLPKVTELHMSDNS-LRQLNLDDNC----IED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTES 215 (418)
T ss_pred cchhhhhhhhccch-hhhhcccccc----ccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchh
Confidence 67777777666642 2211 1110 000 01344555555543211 11112234566666666665422111
Q ss_pred CC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCC
Q 008856 162 PE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRS 206 (551)
Q Consensus 162 ~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 206 (551)
.. ...+|.+--|+++.+ ++.+....-...++++|..|.+.+.+-
T Consensus 216 ~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 216 SEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcc
Confidence 11 223455555566552 243333222224456677777666543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0026 Score=55.89 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=74.4
Q ss_pred CCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhh
Q 008856 403 PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL 482 (551)
Q Consensus 403 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 482 (551)
.-+...+|+.+|....... +..+++|..|.+..|. |..+....+ .++++|..|.+.+ |+++++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNr----It~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l 103 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNR----ITRIDPDLD------TFLPNLKTLILTN-NSIQEL 103 (233)
T ss_pred ccccceecccccchhhccc------CCCccccceEEecCCc----ceeeccchh------hhccccceEEecC-cchhhh
Confidence 3466778888887443211 5677889999998883 777766442 3677899999999 888887
Q ss_pred h--hhccCCCCcCEEEEcCCCCccccCCCC-----CccccceEeecCCc
Q 008856 483 S--SSIIDLRNLTELVLRGCPKLKYFPEKG-----LPSSLLELWISGCP 524 (551)
Q Consensus 483 ~--~~~~~l~~L~~L~l~~c~~l~~l~~~~-----~~~~L~~L~i~~c~ 524 (551)
. ..+..+|+|+.|.+-+++ ++....+. ..|+|+.||..+=.
T Consensus 104 ~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 104 GDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 5 567788999999999844 65554432 15788888888653
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0012 Score=58.02 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=60.2
Q ss_pred CccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-c
Q 008856 61 KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP-Q 139 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~ 139 (551)
.++.++-+++ .+... ....+..++.++.|.+.+|..+.+ ..+..+....++|+.|+|++|+.+++-. .
T Consensus 102 ~IeaVDAsds-~I~~e---Gle~L~~l~~i~~l~l~~ck~~dD-------~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYE---GLEHLRDLRSIKSLSLANCKYFDD-------WCLERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred eEEEEecCCc-hHHHH---HHHHHhccchhhhheeccccchhh-------HHHHHhcccccchheeeccCCCeechhHHH
Confidence 4667777773 44433 444566788888888888887776 3456666677888888888888777543 4
Q ss_pred ccCCCCCCceEEEccCCCC
Q 008856 140 SSFSLSSLREIEIFKCSSL 158 (551)
Q Consensus 140 ~~~~l~~L~~L~l~~c~~l 158 (551)
.+..+++|+.|.+.+.+.+
T Consensus 171 ~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHHhhhhHHHHhcCchhh
Confidence 5677788888888765433
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0088 Score=52.65 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=50.0
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccE
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRH 436 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 436 (551)
+...+++++ +.+..+ ..+.+++.|.+|.+.+ .+..+.+. ..+|+|+.|.+.+|..-. ...--+ +..+++|++
T Consensus 43 ~~d~iDLtd-Ndl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~p--La~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTD-NDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDP--LASCPKLEY 117 (233)
T ss_pred ccceecccc-cchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcch--hccCCccce
Confidence 667777777 344444 2366777888888877 77766654 456778888887777332 111111 556777777
Q ss_pred EEEecc
Q 008856 437 LTIDGC 442 (551)
Q Consensus 437 L~l~~~ 442 (551)
|.+-+|
T Consensus 118 Ltll~N 123 (233)
T KOG1644|consen 118 LTLLGN 123 (233)
T ss_pred eeecCC
Confidence 777777
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.0025 Score=58.45 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=19.0
Q ss_pred CCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 403 PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 403 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
||.|+..++++|.......+..+..+++...|++|.+++|
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 4555555555555433222222222445555556655555
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.006 Score=56.08 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=81.5
Q ss_pred CccEEEeccCcchhh----hHhhhcCCCCCcEEEEecCCC----------cccccccccCCCCcceEEecCCCCCccCCC
Q 008856 288 SLKSLRVRYCSKLES----IAERLDNNTSLETISIYNCEN----------LKILPSGLHKLHQLREISIGSCGNLVSFPG 353 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~----------l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 353 (551)
.+.++++++|.+-+. +...+.+-.+|+..+++..-- +..+...+.+||.|+.++++++---..+|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 488889999876554 344455567777777765310 111123455788999999988533333332
Q ss_pred ----CCCCCCCccEEEEccCccccccc-----cc---------cccCCcccceeccc-cccccccC------CcCCCcce
Q 008856 354 ----GGLPCAKLTALEIYDCKRLKALP-----KG---------LHNLSTLQDLTIGG-ALLSLEED------GLPTNLHS 408 (551)
Q Consensus 354 ----~~~~~~~L~~L~l~~c~~l~~~~-----~~---------~~~l~~L~~L~l~~-~l~~l~~~------~~~~~L~~ 408 (551)
.....+.|++|.+++|. +..+. .. ..+-|.|+...... .+...+.. .+-.+|++
T Consensus 111 ~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred HHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 11223478888888753 32221 11 12345666666555 33332211 01136777
Q ss_pred eEecCCchhhhh---hhhhccccccCCCccEEEEecc
Q 008856 409 LVIRGNMEIWKS---MIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 409 L~l~~~~~~~~~---~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+.+.+|..-... ....+ +..+.+|+.|++.+|
T Consensus 190 vki~qNgIrpegv~~L~~~g--l~y~~~LevLDlqDN 224 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLG--LFYSHSLEVLDLQDN 224 (388)
T ss_pred EEeeecCcCcchhHHHHHHH--HHHhCcceeeecccc
Confidence 777766643221 11111 455677777777766
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.0015 Score=53.63 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=61.0
Q ss_pred CcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhh
Q 008856 405 NLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS 484 (551)
Q Consensus 405 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 484 (551)
.+..++|+.|+.......... +..-..|..+++++| + +..||+.+ .+.++.++.|.+++ +.+.++|.
T Consensus 28 E~h~ldLssc~lm~i~davy~--l~~~~el~~i~ls~N--~--fk~fp~kf------t~kf~t~t~lNl~~-neisdvPe 94 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYM--LSKGYELTKISLSDN--G--FKKFPKKF------TIKFPTATTLNLAN-NEISDVPE 94 (177)
T ss_pred HhhhcccccchhhHHHHHHHH--HhCCceEEEEecccc--h--hhhCCHHH------hhccchhhhhhcch-hhhhhchH
Confidence 455677788874421111111 445567777888887 4 88888865 23566888888888 88888887
Q ss_pred hccCCCCcCEEEEcCCCCccccCC
Q 008856 485 SIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 485 ~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
.+...|.|+.|+++.++ +...|.
T Consensus 95 E~Aam~aLr~lNl~~N~-l~~~p~ 117 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNP-LNAEPR 117 (177)
T ss_pred HHhhhHHhhhcccccCc-cccchH
Confidence 78888899999998854 444443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.001 Score=61.11 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=41.8
Q ss_pred ccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhh
Q 008856 33 HLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQ 112 (551)
Q Consensus 33 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 112 (551)
+.+.|+..||...+. ++...++.|+.|.++- ++++.+ ..+..|.+|+.|.|..+ .+.++.+- ..
T Consensus 20 ~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSv-NkIssL-----~pl~rCtrLkElYLRkN-~I~sldEL---~Y 83 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI------SICEKMPLLEVLSLSV-NKISSL-----APLQRCTRLKELYLRKN-CIESLDEL---EY 83 (388)
T ss_pred HhhhhcccCCCccHH------HHHHhcccceeEEeec-cccccc-----hhHHHHHHHHHHHHHhc-ccccHHHH---HH
Confidence 344555555543321 1223456666666665 455544 33456666666666653 35555443 33
Q ss_pred hhhhhccCCCccEEecccCc
Q 008856 113 QQQLCQLSCRLEYLILSYCE 132 (551)
Q Consensus 113 ~~~l~~~~~~L~~L~L~~~~ 132 (551)
+.++ |+|+.|.|..|+
T Consensus 84 Lknl----psLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNL----PSLRTLWLDENP 99 (388)
T ss_pred HhcC----chhhhHhhccCC
Confidence 4444 666666666554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.012 Score=54.03 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=26.1
Q ss_pred cccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 384 TLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 384 ~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
.|+.|++.+ .+.++.....+|+|+.|.++.|........... ...+++|++|++++|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGN 101 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCC
Confidence 344444444 333333333456666666666632111111111 334466666666666
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.0021 Score=52.82 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=67.7
Q ss_pred ccEEEeccCcch--hhhHhhhcCCCCCcEEEEecCCCccccccccc-CCCCcceEEecCCCCCccCCCCCCCCCCccEEE
Q 008856 289 LKSLRVRYCSKL--ESIAERLDNNTSLETISIYNCENLKILPSGLH-KLHQLREISIGSCGNLVSFPGGGLPCAKLTALE 365 (551)
Q Consensus 289 L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 365 (551)
+..++++.|... ...+..+.....|+..++++ +.++++|..+. .++.++.+.+++ +.+.++|...-.+|.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 556677776432 22333444556677777777 67777765543 456777777777 57777776655666777777
Q ss_pred EccCccccccccccccCCcccceeccc-ccccccc
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEE 399 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~ 399 (551)
++. +.+...|..+..+.+|-.|+..+ .+..++.
T Consensus 107 l~~-N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 107 LRF-NPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccc-CccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 777 44555666666676766666655 4444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.13 Score=42.78 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=52.0
Q ss_pred cCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccC
Q 008856 52 AGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYC 131 (551)
Q Consensus 52 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~ 131 (551)
+...+..+.+|+.+.+.+ .++.+ ....|..+++|+.+.+.+ .+..++.. .+... ++++.+.+..
T Consensus 4 ~~~~F~~~~~l~~i~~~~--~~~~I---~~~~F~~~~~l~~i~~~~--~~~~i~~~----~F~~~----~~l~~i~~~~- 67 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN--TIKKI---GENAFSNCTSLKSINFPN--NLTSIGDN----AFSNC----KSLESITFPN- 67 (129)
T ss_dssp -TTTTTT-TT--EEEETS--T--EE----TTTTTT-TT-SEEEESS--TTSCE-TT----TTTT-----TT-EEEEETS-
T ss_pred CHHHHhCCCCCCEEEECC--CeeEe---Chhhcccccccccccccc--ccccccee----eeecc----cccccccccc-
Confidence 334455677888888775 56666 666677777888888876 36666553 24433 6778888754
Q ss_pred cccccccc-ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccC
Q 008856 132 EGLVKLPQ-SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGE 177 (551)
Q Consensus 132 ~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~ 177 (551)
.+..++. .+..+++|+.+++.. .+..++. +..+ +|+.+.+.+
T Consensus 68 -~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 68 -NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred -cccccccccccccccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 3333433 345577788777754 2444443 3344 666666643
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.011 Score=54.27 Aligned_cols=84 Identities=21% Similarity=0.309 Sum_probs=41.3
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
.+.+|+.|++.++ .++.+ ..+-.+++|++|.++.+. ..-. .++.-++..+|+|++|++++|. +..+
T Consensus 41 ~~~~le~ls~~n~-gltt~-----~~~P~Lp~LkkL~lsdn~-~~~~------~~l~vl~e~~P~l~~l~ls~Nk-i~~l 106 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTL-----TNFPKLPKLKKLELSDNY-RRVS------GGLEVLAEKAPNLKVLNLSGNK-IKDL 106 (260)
T ss_pred cccchhhhhhhcc-ceeec-----ccCCCcchhhhhcccCCc-cccc------ccceehhhhCCceeEEeecCCc-cccc
Confidence 3566666666663 23322 223456677777777642 1111 1244445555777777777643 2211
Q ss_pred c--cccCCCCCCceEEEccC
Q 008856 138 P--QSSFSLSSLREIEIFKC 155 (551)
Q Consensus 138 ~--~~~~~l~~L~~L~l~~c 155 (551)
. ..+..+.+|..|++.+|
T Consensus 107 stl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cccchhhhhcchhhhhcccC
Confidence 1 12334445555555554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.0024 Score=58.86 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=26.5
Q ss_pred CCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCC
Q 008856 143 SLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCR 205 (551)
Q Consensus 143 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 205 (551)
.|+.|+.|.|+- ++++++.++..|++|++|.+.. +.+.++.+.....++++|+.|.+..++
T Consensus 39 kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeec-cccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCC
Confidence 344444444443 3444444444444444444444 223444333333334555555554433
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.01 Score=52.26 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=38.9
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-------cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCC
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-------ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFS 432 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-------~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 432 (551)
.++.++-+++.....-.+.+..++.++.|.+.+ .++.+.. ..++|+.|+|++|+.+++....+ +..++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~---L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLAC---LLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHH---HHHhh
Confidence 566666666443322223334444444444433 2222222 34566666666666666555444 45555
Q ss_pred CccEEEEec
Q 008856 433 SLRHLTIDG 441 (551)
Q Consensus 433 ~L~~L~l~~ 441 (551)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 666555544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.27 Score=40.80 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=44.5
Q ss_pred CCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCc
Q 008856 53 GPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCE 132 (551)
Q Consensus 53 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 132 (551)
...+..+++|+.+++.+ .++.+ +...+..++.|+.+.+.+ .+..++.. .+... ++|+.+++...
T Consensus 28 ~~~F~~~~~l~~i~~~~--~~~~i---~~~~F~~~~~l~~i~~~~--~~~~i~~~----~F~~~----~~l~~i~~~~~- 91 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPN--NLTSI---GDNAFSNCKSLESITFPN--NLKSIGDN----AFSNC----TNLKNIDIPSN- 91 (129)
T ss_dssp TTTTTT-TT-SEEEESS--TTSCE----TTTTTT-TT-EEEEETS--TT-EE-TT----TTTT-----TTECEEEETTT-
T ss_pred hhhcccccccccccccc--ccccc---ceeeeecccccccccccc--cccccccc----ccccc----ccccccccCcc-
Confidence 33344577888888876 36666 556677777888888865 35555543 24434 78888888652
Q ss_pred ccccccc-ccCCCCCCceEEEcc
Q 008856 133 GLVKLPQ-SSFSLSSLREIEIFK 154 (551)
Q Consensus 133 ~l~~~~~-~~~~l~~L~~L~l~~ 154 (551)
+..++. .+.++ +|+.+.+.+
T Consensus 92 -~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 92 -ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp --BEEHTTTTTT--T--EEE-TT
T ss_pred -ccEEchhhhcCC-CceEEEECC
Confidence 344443 45555 777777653
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.1 Score=28.26 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=13.3
Q ss_pred CccEEEEccCcccccccccccc
Q 008856 360 KLTALEIYDCKRLKALPKGLHN 381 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~ 381 (551)
+|++|++++| .++.+|+.+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677777776 56667665543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.15 Score=25.65 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=7.6
Q ss_pred CCcCEEEEcCCCCccccC
Q 008856 490 RNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 490 ~~L~~L~l~~c~~l~~l~ 507 (551)
++|++|++++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 356666666654 55543
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.14 Score=27.66 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.7
Q ss_pred ccEEeecCC
Q 008856 90 LKRLTITSC 98 (551)
Q Consensus 90 L~~L~l~~~ 98 (551)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=80.85 E-value=1 Score=25.43 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=7.8
Q ss_pred CCccEEeecCCccccc
Q 008856 88 CSLKRLTITSCPKLQS 103 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~ 103 (551)
++|++|++++|.++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4455555555544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-19
Identities = 62/326 (19%), Positives = 102/326 (31%), Gaps = 58/326 (17%)
Query: 123 LEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALK 182
E L L + + S S +I+ ALK
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69
Query: 183 SLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLT------------------I 224
+ + T L + L Q P L+ +
Sbjct: 70 ATADLLEDATQPGRVALELRSV-PLP-----QFPDQAFRLSHLQHMTIDAAGLMELPDTM 123
Query: 225 WYCDNIRTLTV---------EEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPA 275
+ TLT+ + L L IR CP LT ELP
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNR---------LRELSIRACPELT------ELPE 168
Query: 276 TLESLEVGNLPPSLKSLRVRY--CSKLESIAERLDNNTSLETISIYNCENLKILPSGLHK 333
L S + L +L+ + + S+ + N +L+++ I N L L +H
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHH 227
Query: 334 LHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG- 392
L +L E+ + C L ++P A L L + DC L LP +H L+ L+ L + G
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Query: 393 -ALLSL-EEDGLPTNLHSLVIRGNME 416
L L +++ +++
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 62/362 (17%), Positives = 115/362 (31%), Gaps = 73/362 (20%)
Query: 54 PLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQ 113
P + + + + W+ N + ++ + L++ E Q
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQANS------NNPQIETRTGRALKATADLLEDATQ 80
Query: 114 QQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFP-EVALPSKLKK 172
L L L + P +F LS L+ + I + L+ P + + L+
Sbjct: 81 PGR-------VALELRSVP-LPQFPDQAFRLSHLQHMTI-DAAGLMELPDTMQQFAGLET 131
Query: 173 IQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI-------AAVQLPSSLKMLTIW 225
+ + L++LP + + + L LSI C LT + A L L
Sbjct: 132 LTLARNP-LRALPAS-IASL-NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 226 YCDNIRTLTVEEGI-QCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGN 284
+ ++ I + L+ L IR L+ L + L
Sbjct: 189 RLEWTGIRSLPASIANLQN---------LKSLKIRNS-PLS------ALGPAIHHLP--- 229
Query: 285 LPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGS 344
L+ L +R C+ L + L+ + + +C NL LP +H+L QL +
Sbjct: 230 ---KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK----- 281
Query: 345 CGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPT 404
L++ C L LP + L + + L + + P
Sbjct: 282 -------------------LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322
Query: 405 NL 406
Sbjct: 323 AR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 9e-15
Identities = 59/336 (17%), Positives = 96/336 (28%), Gaps = 80/336 (23%)
Query: 194 SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLL 253
S E L G +L L + + + S+ R+ S
Sbjct: 12 SGRENLYFQGSTALR-----PYHDVLSQW--------QRHYNADRNRWHSAWRQANSNNP 58
Query: 254 EHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSL 313
+ + L AT + LE P +L +R L ++ + L
Sbjct: 59 QIE----------TRTGRALKATADLLEDATQP-GRVALELRSV-PLPQFPDQAFRLSHL 106
Query: 314 ETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLK 373
+ ++I L LP + + L +++ L + P +L L I C L
Sbjct: 107 QHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELT 164
Query: 374 ALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSS 433
LP+ L + + E NL SL + + +
Sbjct: 165 ELPEPL------------ASTDASGEHQGLVNLQSLRLEWT-----GIRSLPASIANLQN 207
Query: 434 LRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLT 493
L+ L I L L +I L L
Sbjct: 208 LKSLKIRNS-----------------------------------PLSALGPAIHHLPKLE 232
Query: 494 ELVLRGCPKLKYFPEK-GLPSSLLELWISGCPLIEE 528
EL LRGC L+ +P G + L L + C +
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 7e-11
Identities = 46/261 (17%), Positives = 75/261 (28%), Gaps = 49/261 (18%)
Query: 300 LESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG------ 353
+ S +++ E + L+ L + + +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60
Query: 354 ---------------GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSL 397
ALE+ L P LS LQ +TI L+ L
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMEL 119
Query: 398 -EEDGLPTNLHSLVIRGNM------EIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVS 450
+ L +L + N I + LR L+I C +
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIAS-----------LNRLRELSIRAC---PELTE 165
Query: 451 FP--LEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE 508
P L + L SLR+ ++ + L +SI +L+NL L +R L
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNS-PLSALGP 223
Query: 509 K-GLPSSLLELWISGCPLIEE 528
L EL + GC +
Sbjct: 224 AIHHLPKLEELDLRGCTALRN 244
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 2e-10
Identities = 58/351 (16%), Positives = 111/351 (31%), Gaps = 76/351 (21%)
Query: 26 VWRSAT----DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHN 81
V + + L + + R FL+ I L+ + +E
Sbjct: 253 VQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEV------K 304
Query: 82 ELL-----QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK 136
LL L R +T+ P+ S++AE +D + C+ L
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-------LATWDNWKHVNCDKLTT 357
Query: 137 LPQSSFSLSSLREIEIFKC-SSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCD-TN 193
+ +S SL+ L E K L FP +P+ L + + D +KS +
Sbjct: 358 IIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLHK 413
Query: 194 SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTL--TVEEGIQCSSSSRRYTS- 250
SL + S I ++ L +K +N L ++ + + + + S
Sbjct: 414 YSL--VEKQPKESTISIPSIYLELKVK------LENEYALHRSI---VDHYNIPKTFDSD 462
Query: 251 ---------YLLEHLG--------IRYCPSLTCI-----FSKNELPATLESLE-VGNLPP 287
Y H+G + F + ++ + G++
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 288 SLKSLRV--RYCSKLESIAERL-----DNNTSLETISIYNCENLKILPSGL 331
+L+ L+ Y + ERL D +E ++ + +L L
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-NLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 58/428 (13%), Positives = 120/428 (28%), Gaps = 89/428 (20%)
Query: 150 IEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTY 209
++ F C + P+ L + E D + + + +L +
Sbjct: 30 VDNFDCKDVQDMPKSILSKE-------EIDHIIMSKD----AVSGTLRLFWTL-LSKQEE 77
Query: 210 IAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYL--LEHLGIRYCPSLTCI 267
+ + L++ + I+T E Q S +R Y L + +
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKT----EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 268 FSK-NELPATLESLEVGN------LPPSLKS----------------------LRVRYCS 298
+L L L + S K+ L ++ C+
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 299 KLESIAERLDN-NTSLETISIYNCENLKILPSGLHKL-HQLREISIGSCGNLVSFPGGGL 356
E++ E L ++ ++ + +H + +LR +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----------LKSKPY 243
Query: 357 PCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHS--LVIRGN 414
L L + + K A L T + + L + + + HS L
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 415 MEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIE 474
+ ++ R L + P + +R +
Sbjct: 304 KSLLLKYLD-----CRPQDLPREVLTT---------NPRRLSIIAESIRDGLA----TWD 345
Query: 475 DFP--NLERLSSSI-IDLRNLTELVLRGC-PKLKYFPEK-GLPSSLLE-LWISG----CP 524
++ N ++L++ I L L R +L FP +P+ LL +W
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 525 LIEEKCRK 532
++ K K
Sbjct: 406 VVVNKLHK 413
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 63/415 (15%), Positives = 138/415 (33%), Gaps = 64/415 (15%)
Query: 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL 119
L+ L+I N++ + I + SL L I + L++ ++ K +
Sbjct: 123 TNLQTLRIGNVETFSEI---RRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRD----- 173
Query: 120 SCRLEYLILSYCEGLVKLPQSSFS-LSSLREIEIFKCS----SLVSFPEVALPSKLKK-- 172
+ +L L E L + LSS+R +E+ + P + S +KK
Sbjct: 174 ---IHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229
Query: 173 -----IQIGECDALKSLPEAWMCDTNSSLEILSIHG--CRSLTYIAAVQLPSSLKMLTIW 225
+ + L L + + + +++G + + V ++ +TI
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289
Query: 226 YCD--NIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYC-------------PSLTCI-FS 269
+ ++ + + SL + S
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEK-------VKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342
Query: 270 KNELPA-TLESLEVGNLPPSLKSLRVRYC--SKLESIAERLDNNTSLETISIYNCENLKI 326
+N + L++ PSL++L + ++ E L +L ++ I
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHP 401
Query: 327 LPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQ 386
+P ++R +++ S + L L++ + L + L L L
Sbjct: 402 MPDSCQWPEKMRFLNLSST-GIRVVKTCIPQ--TLEVLDVSNN-NLDSFSLFLPRLQEL- 456
Query: 387 DLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441
++ L +L + L L + I N ++ + G F R +SL+ + +
Sbjct: 457 YIS-RNKLKTLPDASLFPVLLVMKISRN-QL--KSVPDGI-FDRLTSLQKIWLHT 506
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 64/419 (15%), Positives = 129/419 (30%), Gaps = 41/419 (9%)
Query: 122 RLEYLILSYCEGLVKLPQSSF-SLSSLREIEIFKCSSLVSFPEVALP--SKLKKIQIGEC 178
L+ LIL + + +F SL SL +++ L S S LK + +
Sbjct: 51 NLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN 108
Query: 179 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEG 238
++L + ++L+ L I + + I + + L L + +
Sbjct: 109 P-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQ 166
Query: 239 IQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCS 298
S + + L + + + + LE+ + +L +
Sbjct: 167 SLKSIRDIHHLT--LHLSESAFLLEIFADILSS-----VRYLELRDT--NLARFQFSPLP 217
Query: 299 KLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFP------ 352
E + ++ + L L + +L ++ E + L F
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV-EFDDCTLNGLGDFNPSESDV 276
Query: 353 ---GGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSL 409
G + + L I L L ++ +T+ + + L +L SL
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336
Query: 410 VI---RGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPT 466
N + + ++ + SL+ L + +M K +L L
Sbjct: 337 EFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-------QKTGEILLTL-K 387
Query: 467 TLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525
LTSL I + S + L L ++ +P +L L +S L
Sbjct: 388 NLTSLDI-SRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNNNL 443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 81/448 (18%), Positives = 137/448 (30%), Gaps = 55/448 (12%)
Query: 122 RLEYLILSYCEGLVKLPQSSFS-LSSLREIEIFKCSSLVSFPEVALPSK---LKKIQIGE 177
LE+L LS L L S F LSSL+ + + + +L L+ ++IG
Sbjct: 75 SLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGN 132
Query: 178 CDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEE 237
+ + +SL L I L + Q S++ + + + E
Sbjct: 133 VETFSEIRRI-DFAGLTSLNELEIKALS-LRNYQS-QSLKSIRDIHHLTLHLSESAFLLE 189
Query: 238 GIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPP-SLKSLRVRY 296
SS RY L + + P + L S L
Sbjct: 190 IFADILSSVRYLE--LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247
Query: 297 CSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGL 356
LE D+ T E+ + G + +R + I
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307
Query: 357 PCAKLTALEIYDCKRLKALPKG-LHNLSTLQDLTIGG------ALLSLEEDGLPTNLHSL 409
K+ + + + K + +P +L +L+ L + L + G +L +L
Sbjct: 308 LLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366
Query: 410 VIRGNMEIWKSMIEWGRGFHRFSSLRHLTI---------DGCDDDTMMVSFPLEDKRLGT 460
V+ N + +SM + G +L L I D C M L +
Sbjct: 367 VLSQN-HL-RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424
Query: 461 VLR-LPTTLTSLRI---------EDFPNLERLS---------SSIIDLRNLTELVLRGCP 501
V +P TL L + P L+ L L + +
Sbjct: 425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN- 483
Query: 502 KLKYFPE---KGLPSSLLELWISGCPLI 526
+LK P+ L S L ++W+ P
Sbjct: 484 QLKSVPDGIFDRLTS-LQKIWLHTNPWD 510
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 78/500 (15%), Positives = 158/500 (31%), Gaps = 63/500 (12%)
Query: 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK--DQQQQ 115
R PK+ +++ + + + +S L+ + + D +
Sbjct: 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123
Query: 116 LCQLSC-RLEYLILSYCEGL--VKLPQSSFSLSSLREIEIFKCS----SLVSFPEVA-LP 167
L S + L+LS CEG L + + +L+E+++ + S
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183
Query: 168 SKLKKIQIGEC------DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPSSLK 220
+ L + I AL+ L +L+ L ++ L +A + Q L+
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRC-----PNLKSLKLNRAVPLEKLATLLQRAPQLE 238
Query: 221 MLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI-FSKNELPATLES 279
L V G+ + S C L C+ + +PA L +
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSG---------------CKELRCLSGFWDAVPAYLPA 283
Query: 280 LEVGNLPPSLKSLRVRYCSKL-ESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLR 338
+ ++ L +L + Y + + + L L+ + + + L LR
Sbjct: 284 V--YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341
Query: 339 EISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLE 398
E+ + V P L L ++ C +L+++ ++ +TI ++
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400
Query: 399 EDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRL 458
L +E G LR L++ G L DK
Sbjct: 401 RFRLCIIEPKAPDYLTLEPLDIGF--GAIVEHCKDLRRLSLSGL----------LTDKVF 448
Query: 459 GTVLRLPTTLTSLRIEDFPN----LERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPS- 513
+ + L + + + + S +L +L +R CP
Sbjct: 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG---CDSLRKLEIRDCPFGDKALLANASKL 505
Query: 514 -SLLELWISGCPLIEEKCRK 532
++ LW+S C + C+
Sbjct: 506 ETMRSLWMSSCSVSFGACKL 525
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 8e-09
Identities = 64/375 (17%), Positives = 123/375 (32%), Gaps = 48/375 (12%)
Query: 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQ--QQLC 117
L ++++ N N T + + L D+ L+ L I + S + +
Sbjct: 491 KDLTDVELYNCPNMTQL----PDFLYDLPELQSLNIACN-RGISAAQLKADWTRLADDED 545
Query: 118 QLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSS--LVSFPEVALPSKLKKIQI 175
++ + Y L + P S+ SL + ++ + C + KL +++
Sbjct: 546 TGPK-IQIFYMGYNN-LEEFPASA-SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL 602
Query: 176 GECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTV 235
++ +PE C +E L + L YI + S+ ++ + +
Sbjct: 603 DYN-QIEEIPE-DFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659
Query: 236 EEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295
I CS + + + + S NE+ + + ++ +
Sbjct: 660 GRNISCSMDDYKGIN--ASTVTL----------SYNEI-QKFPTELFATGS-PISTIILS 705
Query: 296 YCSKLESIAER--------LDNNTSLETISIYNCENLKILPSGLH--KLHQLREISIGSC 345
+ SI E N L TI + L L L L + +
Sbjct: 706 NN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN 763
Query: 346 GNLVSFPGGGLPCAKLTALEI------YDCKRLKALPKGLHNLSTLQDLTIGGALLSLEE 399
SFP L ++L A I + L+ P G+ +L L IG + +
Sbjct: 764 -CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822
Query: 400 DGLPTNLHSLVIRGN 414
+ L L+ L I N
Sbjct: 823 EKLTPQLYILDIADN 837
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 13/148 (8%)
Query: 279 SLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLR 338
N+ + Y + E+ N L + +YNC N+ LP L+ L +L+
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518
Query: 339 EISIGS---------CGNLVSFPGGGLPCAKLTALEIYDCKRLKALPK--GLHNLSTLQD 387
++I + K+ + L+ P L + L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGL 577
Query: 388 LTIGG-ALLSLEEDGLPTNLHSLVIRGN 414
L + LE G L L + N
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYN 605
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 62/398 (15%), Positives = 116/398 (29%), Gaps = 54/398 (13%)
Query: 143 SLSSLREIEI-FKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSI 201
+ L+ +++ +K S K I + CD+ LP + S
Sbjct: 169 VTTELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSAVWLPAGTY--QVVAYTTYSQ 226
Query: 202 HGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYC 261
G + S++ + DN T IQ ++ Y
Sbjct: 227 SGIKRSELETQ-----SVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYK--------- 272
Query: 262 PSLTCIFSKNELPATLESLEVGNLPPSLKS--LRVRYCSKLESIAERLDNNTSLETISIY 319
+L I+ + N + + LDNN + +S+
Sbjct: 273 -ALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLA 331
Query: 320 NCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGL 379
+P + +L +L+ +S G+ + + G +LT + K +
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGT--HSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389
Query: 380 HNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWG----------RGFH 429
L Q L L L +D + N I+ + I + G +
Sbjct: 390 MFLDYDQRLN----LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ 445
Query: 430 RFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDL 489
R + L+ + T + + E S +L
Sbjct: 446 RLTKLQIIYFANS--------------PF-TYDNIAVDWEDANSDYAKQYENEELSWSNL 490
Query: 490 RNLTELVLRGCPKLKYFPE--KGLPSSLLELWISGCPL 525
++LT++ L CP + P+ LP L L I+
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRG 527
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 69/511 (13%), Positives = 136/511 (26%), Gaps = 93/511 (18%)
Query: 55 LKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK---D 111
L R P L LK+ + + +L+S+
Sbjct: 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL 127
Query: 112 QQQQLCQLSC-RLEYLILSYCEGL--VKLPQSSFSLSSLREIEIFKCS-------SLVSF 161
+L + LE L L C G L ++ + + + S L
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187
Query: 162 PEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKM 221
+ ++ + E + + SL + + L + + ++L+
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEE 247
Query: 222 LTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLE 281
C S +++ + + L + P + L
Sbjct: 248 F------------------CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL- 288
Query: 282 VGNLPPSLKSLRVRYCSKL-ESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREI 340
++ L + Y E + +LE + N + L QL+ +
Sbjct: 289 -FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347
Query: 341 SIGSCGNLVSFPGGGLP------------CAKLTALEIYDCK----RLKALPKGLHNLST 384
I + C +L + +Y L+++ L NL
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407
Query: 385 LQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDD 444
+ + + + + L + SL+I LR
Sbjct: 408 FRLVLLDR-EERITDLPLDNGVRSLLI------------------GCKKLRRFAFYLR-- 446
Query: 445 DTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPN----LERLSSSIIDLRNLTELVLRGC 500
L D L + + + + + L S NL +L +RGC
Sbjct: 447 -----QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG---CPNLQKLEMRGC 498
Query: 501 PKLKYFPEKGLPS------SLLELWISGCPL 525
F E+ + + SL LW+ G
Sbjct: 499 C----FSERAIAAAVTKLPSLRYLWVQGYRA 525
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 66/271 (24%), Positives = 95/271 (35%), Gaps = 72/271 (26%)
Query: 271 NELPATLESLEVGN-----LPPSLKSLRVRYCS--KLESIAERLDNNTSLETISIYNCEN 323
+ LPA + +L + + LP LR S +L S+ L S +
Sbjct: 57 DCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSN-PLTH 115
Query: 324 LKILPSGLHKLH--------------QLREISIGSCGNLVSFPGGGLPCAKLTALEIYDC 369
L LPSGL KL L+E+S+ L S P ++L L Y+
Sbjct: 116 LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN 171
Query: 370 KRLKALPKGLHNLSTL-------QDLTIG-GALLSLEEDG--------LPTNLHSLVIRG 413
+L +LP L L L L L LP+ L L++ G
Sbjct: 172 -QLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG 230
Query: 414 NM--EIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSL 471
N + S L+ L + G RL ++ LP+ L SL
Sbjct: 231 NRLTSLPVLP----------SELKELMVSGN--------------RLTSLPMLPSGLLSL 266
Query: 472 RIEDFPN-LERLSSSIIDLRNLTELVLRGCP 501
+ N L RL S+I L + T + L G P
Sbjct: 267 SVYR--NQLTRLPESLIHLSSETTVNLEGNP 295
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 68/326 (20%), Positives = 112/326 (34%), Gaps = 49/326 (15%)
Query: 115 QLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQ 174
+ C + L + GL LP + + + I + L S P LP +L+ ++
Sbjct: 35 RACLNN-GNAVLNVGES-GLTTLPDCLPA--HITTLVIPDNN-LTSLPA--LPPELRTLE 87
Query: 175 IGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLT 234
+ L SLP L I S LT++ A LPS L L I+ + +L
Sbjct: 88 VSGNQ-LTSLPVLPPGLLE--LSIFSN----PLTHLPA--LPSGLCKLWIFGN-QLTSLP 137
Query: 235 VE----EGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSK-NELPATLESLEV----GN- 284
V + + S + L L L ++ LP L+ N
Sbjct: 138 VLPPGLQELSVSDNQLASLPALPSEL-----CKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192
Query: 285 ---LPPSLKSLRVRYCS--KLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLRE 339
LP L + +L S+ + L+ + + L LP +L+E
Sbjct: 193 LASLPTLPSELYKLWAYNNRLTSLPALP---SGLKELIVSGNR-LTSLPVLPS---ELKE 245
Query: 340 ISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEE 399
+ + L S P + L +L +Y +L LP+ L +LS+ + + G LS
Sbjct: 246 LMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERT 300
Query: 400 DGLPTNLHSLVIRGNMEIWKSMIEWG 425
+ S I M
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGAS 326
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 6e-08
Identities = 81/515 (15%), Positives = 157/515 (30%), Gaps = 79/515 (15%)
Query: 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL 119
+L+ L++ + I E +++ +L+ L + S K+ L L
Sbjct: 48 EQLQLLELGSQYTPLTI---DKEAFRNLPNLRILDLGSS-KIYFL-------HPDAFQGL 96
Query: 120 SCRLEYLILSYCE-GLVKLPQSSFS-LSSLREIEIF--KCSSLVSFPEVALPSKLKKIQI 175
L L L +C L F L +L +++ + SL P + LK I
Sbjct: 97 F-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155
Query: 176 GECDALKSLPEAWMCDTNSSLEILSIHGCR--SLTYIAAVQLPSSLKMLTIWYCD----N 229
+L S+ S + + + + + + D
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215
Query: 230 IRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSL 289
S S+ ++ L H+ + F + + ++ G S+
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHI-------MGAGFGFHNIKDPDQNTFAGLARSSV 268
Query: 290 KSLRVRYCSKLESIAER-LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNL 348
+ L + + + S+ R + L+ +++ + KI + L L+ +++ L
Sbjct: 269 RHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LL 326
Query: 349 VSFPGG---GLPCAKLTALEIYDCKRLKALPKG-LHNLSTLQDLTIGGALLSLEEDGLP- 403
GLP K+ +++ + + L LQ L + L+ +P
Sbjct: 327 GELYSSNFYGLP--KVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPS 382
Query: 404 -----------TNLHSLVIRGN----MEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTM- 447
L + + N E ++ R L+ L ++ +
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442
Query: 448 MVSFPLEDKRLGTVLRL---------PTTLTSLRIEDFPNLERL-----------SSSII 487
P E+ L L L T L E +L+ L
Sbjct: 443 GDQTPSENPSL-EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501
Query: 488 DLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISG 522
L L L L +L LP++L L IS
Sbjct: 502 HLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR 535
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 56/426 (13%), Positives = 136/426 (31%), Gaps = 58/426 (13%)
Query: 122 RLEYLILSYCEGLVKLPQSSFS-LSSLREIEIFKCS-SLVSFPEVALP--SKLKKIQIGE 177
L L L + + L +F L L E+ ++ C S + L ++ + +
Sbjct: 74 NLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132
Query: 178 CDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCD-NIRTLTVE 236
++SL +SL+ + + + + +L L+ T+ + +L
Sbjct: 133 NQ-IRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHEL-EPLQGKTLSFFSLAANSLYSR 189
Query: 237 EGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNL--PPSLKSLRV 294
+ + + +LE L + T + N + + +L +
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGN-FSNAISKSQAFSLILAHHIMGAGF 247
Query: 295 RYCSKLESIAERL---DNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSF 351
+ ++ + +S+ + + + + L L+ +++ +
Sbjct: 248 GF-HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKI 305
Query: 352 PGG---GLPCAKLTALEIYDCKRLKALPKG-LHNLSTLQDLTIGGALLSLEEDGL---PT 404
GL L L + L L + L + + + +++ +D
Sbjct: 306 ADEAFYGLD--NLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362
Query: 405 NLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRL 464
L +L +R N ++ H S+ + L +L T+ ++
Sbjct: 363 KLQTLDLRDN-----ALTT----IHFIPSIPDIF--------------LSGNKLVTLPKI 399
Query: 465 PTTLTSLRIEDFPNLERLS--SSIIDLRNLTELVLRGCPKLKYFPEKGL---PSSLLELW 519
T + + + LE L ++ + +L L+L + SL +L+
Sbjct: 400 NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLF 457
Query: 520 ISGCPL 525
+ L
Sbjct: 458 LGENML 463
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 55/369 (14%), Positives = 113/369 (30%), Gaps = 57/369 (15%)
Query: 65 LKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSL------VAEEEKDQQQQLCQ 118
L+I ++ I + ++ + + + +++ L +
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265
Query: 119 LSCRLEYLILSYCEGLVKLPQSSFS-LSSLREIEIFKCSSLVSFPEVALP--SKLKKIQI 175
S + +L LS+ + L F L L+ + + + + A L+ + +
Sbjct: 266 SS--VRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNL 321
Query: 176 GECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTV 235
L L + + + + + I + K L ++TL +
Sbjct: 322 SYNL-LGELYSSNFYG-LPKVAYIDLQKNH-IAIIQ----DQTFKFLE-----KLQTLDL 369
Query: 236 EE-GIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNEL---PATLESLEVGNLPPSLKS 291
+ + L + P + + N + LE+L++ +
Sbjct: 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKIN--LTANLIHLSENRLENLDILYFLLRVPH 427
Query: 292 LRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLR----EISIGSCGN 347
L++ + + S PS L QL + +
Sbjct: 428 LQILILN-----------QNRFSSCSG------DQTPSENPSLEQLFLGENMLQLAWETE 470
Query: 348 LVSFPGGGLPCAKLTALEIYDCKRLKALPKG-LHNLSTLQDLTIGG-ALLSLEEDGLPTN 405
L GL L L + L +LP G +L+ L+ L++ L L + LP N
Sbjct: 471 LCWDVFEGLS--HLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN 527
Query: 406 LHSLVIRGN 414
L L I N
Sbjct: 528 LEILDISRN 536
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 47/261 (18%), Positives = 77/261 (29%), Gaps = 59/261 (22%)
Query: 295 RYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCG-------- 346
R+ S L + +N S E + P G + ++ + C
Sbjct: 18 RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77
Query: 347 ----NLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGL 402
L S P L +L C L LP+ +L +L LS L
Sbjct: 78 LNNLGLSSLPEL---PPHLESLVA-SCNSLTELPELPQSLKSLLVDNNNLKALS----DL 129
Query: 403 PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVL 462
P L L + N +E S L+ + +D L +
Sbjct: 130 PPLLEYLGVSNN------QLEKLPELQNSSFLKIIDVDNN--------------SLKKLP 169
Query: 463 RLPTTLTSL-----RIEDFPNLERLSS------------SIID-LRNLTELVLRGCPKLK 504
LP +L + ++E+ P L+ L + D +L +V L+
Sbjct: 170 DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN-ILE 228
Query: 505 YFPEKGLPSSLLELWISGCPL 525
PE L ++ L
Sbjct: 229 ELPELQNLPFLTTIYADNNLL 249
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 78/428 (18%), Positives = 134/428 (31%), Gaps = 101/428 (23%)
Query: 128 LSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALP-SKLKKIQIGECDALKSLPE 186
L + L ++P + ++ S E + P ++ ++ +C
Sbjct: 17 LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-------- 68
Query: 187 AWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSR 246
+ L ++ L+ LP L + E Q
Sbjct: 69 -----LDRQAHELELNNL-GLS-----SLPELPPHLESLVASCNSLTELPELPQS----- 112
Query: 247 RYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAER 306
L+ L + + L +LPP L+ L V +LE + E
Sbjct: 113 ------LKSLLVDN-------NNLKALS---------DLPPLLEYLGVSNN-QLEKLPE- 148
Query: 307 LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEI 366
L N++ L+ I + N +LK LP L + L P LTA+
Sbjct: 149 LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAA----GNNQLEELPELQ-NLPFLTAIYA 202
Query: 367 YDCKRLKALPKGLHNLSTL-------QDLTIGGALLSLEE-----------DGLPTNLHS 408
+ LK LP +L ++ ++L L L LP +L +
Sbjct: 203 DNNS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261
Query: 409 LVIRGN--MEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFP------LEDKRLGT 460
L +R N ++ + SL L + + P + +
Sbjct: 262 LNVRDNYLTDLPEL----------PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 311
Query: 461 VLRLPTTLTSLRIEDFPN-LERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELW 519
+ LP +L L + + N L L + L L+ L PE LP +L +L
Sbjct: 312 LCDLPPSLEELNVSN--NKLIELPALP---PRLERLIASFN-HLAEVPE--LPQNLKQLH 363
Query: 520 ISGCPLIE 527
+ PL E
Sbjct: 364 VEYNPLRE 371
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 89/475 (18%), Positives = 147/475 (30%), Gaps = 122/475 (25%)
Query: 61 KLEELKINNIQNETCIWKSHNELL---QDICSLKRLTI---------TSCPKLQSLVAEE 108
+ L+ + + ++ L + L+ L L+SL
Sbjct: 61 AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSL--LV 118
Query: 109 EKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPS 168
+ + + L L LEYL +S + L KLP + S L+ I++ S L P+ LP
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNS-LKKLPD--LPP 173
Query: 169 KLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCD 228
L+ I G L+ LPE L + L +LP L
Sbjct: 174 SLEFIAAGNNQ-LEELPELQNL---PFLTAIYADNNS-LK-----KLPDLPLSLESIVAG 223
Query: 229 NIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRY---------CPSLTCIFSKN-------E 272
N + E L + PSL + ++ E
Sbjct: 224 NNILEELPELQNLPF---------LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE 274
Query: 273 LPATLESLEVGN--------LPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENL 324
LP +L L+V LPP+L L ++ S+ + SLE +++ N L
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIRSLCDLP---PSLEELNVSNN-KL 329
Query: 325 KILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLST 384
LP+ +L +L I S +L P L L + L+ P ++
Sbjct: 330 IELPALPPRLERL----IASFNHLAEVPEL---PQNLKQLHVEYN-PLREFPDIPESV-- 379
Query: 385 LQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDD 444
+DL + L + E LP NL L + N
Sbjct: 380 -EDLRMNSHLAEVPE--LPQNLKQLHVETN------------------------------ 406
Query: 445 DTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRG 499
L +P ++ LR+ ++ + L + V
Sbjct: 407 ------------PLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 81/479 (16%), Positives = 150/479 (31%), Gaps = 85/479 (17%)
Query: 60 PKLEELKI--NNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLC 117
L+EL + N IQ+ E ++ +L+ L ++S K+QS+ + L
Sbjct: 124 KTLKELNVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSN-KIQSI----YCTDLRVLH 173
Query: 118 QLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGE 177
Q+ L LS + + +F L ++ + ++ +
Sbjct: 174 QMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMK------------TC 220
Query: 178 CDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEE 237
L L L + +L L + + +++
Sbjct: 221 IQGLAGL-------EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273
Query: 238 GIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPP-SLKSLRVRY 296
I + +S+ L + I + F L L + + G P LKSL+
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL--ELVNCKFGQFPTLKLKSLKRLT 331
Query: 297 CSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLH--QLREISIGSCGNLVSFPGG 354
+N S + +L+ L L L S
Sbjct: 332 ----------FTSNKGGNAFSEVDLPSLEFL-----DLSRNGLSFKGCCSQ------SDF 370
Query: 355 GLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLV--- 410
G L L++ + + L L+ L L + E + +L +L+
Sbjct: 371 GTT--SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 411 IRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTS 470
I + G F+ SSL L + G ++ L + LT
Sbjct: 428 ISHT---HTRVAFNGI-FNGLSSLEVLKMAGN---------SFQENFLPDIFTELRNLTF 474
Query: 471 LRIEDFPN-LERLSSSIID-LRNLTELVLRGCPKLKYFPEKGLP--SSLLELWISGCPL 525
L + LE+LS + + L +L L + +LK P+ +SL ++W+ P
Sbjct: 475 LDLSQ--CQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 55/336 (16%), Positives = 107/336 (31%), Gaps = 51/336 (15%)
Query: 205 RSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSL 264
+ I LP S K L + + +R L S S + L+ L +
Sbjct: 17 LNFYKIPD-NLPFSTKNLDLSFN-PLRHLG-------SYSFFSFPE--LQVLDL------ 59
Query: 265 TCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAER-LDNNTSLETISIYNCEN 323
S+ E+ T+E +L L +L + + ++S+A +SL+ + N
Sbjct: 60 ----SRCEI-QTIEDGAYQSLS-HLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET-N 111
Query: 324 LKILPSG-LHKLHQLREISIGSCGNLVSFPGGGL--PCAKLTALEIYDCKRLKALPKGLH 380
L L + + L L+E+++ + + SF L L++ K ++++
Sbjct: 112 LASLENFPIGHLKTLKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT-- 167
Query: 381 NLSTLQDLTIGGALLSLEEDGL---------PTNLHSLVIRGNMEIWKSMIEWGRGFHRF 431
+L L + + L L + + LH L +R N
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN------FDSLNVMKTCI 221
Query: 432 SSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPT-TLTSLRIEDFPNLERLSSSIID-L 489
L L + LE + L T+ R+ + + L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281
Query: 490 RNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525
N++ L ++ + L + C
Sbjct: 282 TNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCKF 316
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 42/279 (15%), Positives = 80/279 (28%), Gaps = 38/279 (13%)
Query: 257 GIRYCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLET 315
GI LT + + N + +L++ +L L KL ++ + T L
Sbjct: 59 GIEKLTGLTKLICTSNNI----TTLDLSQNT-NLTYLACDSN-KLTNLD--VTPLTKLTY 110
Query: 316 ISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKAL 375
++ L L + + L ++ L +LT L+ + K++ L
Sbjct: 111 LNCDTN-KLTKLD--VSQNPLLTYLNCARN-TLTEIDVSHNT--QLTELDCHLNKKITKL 164
Query: 376 PKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLR 435
+ + L L ++ + L+ L N I + ++ ++ L
Sbjct: 165 D--VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN-NI--TKLD----LNQNIQLT 215
Query: 436 HLTIDGCDDDTMMVSFPLEDKRLGTVLRLP-TTLTSLRIEDFPNLERLSSS--------I 486
L + + T LT L + L L +
Sbjct: 216 FLDCSSN----KLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDL 271
Query: 487 IDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525
L GC K+K L L +
Sbjct: 272 THNTQLIYFQAEGCRKIKELDVTHNT-QLYLLDCQAAGI 309
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 60/392 (15%), Positives = 128/392 (32%), Gaps = 73/392 (18%)
Query: 58 RIPKLEELKI--NNIQNETCIWKSHNELLQDICS---LKRLTITSCPKLQSLVAEEEKDQ 112
++ L L ++I + T I K L + IC+ + L ++ L L + K
Sbjct: 40 QLATLTSLDCHNSSITDMTGIEKLTG-LTKLICTSNNITTLDLSQNTNLTYLACDSNKLT 98
Query: 113 QQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKK 172
+ L+ +L YL + + +S + C+ + L +
Sbjct: 99 NLDVTPLT-KLTYLNCDTNK------LTKLDVSQNPLLTYLNCAR----------NTLTE 141
Query: 173 IQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA-----VQLP-SSLKMLTIWY 226
I + L L C N + L + LT + +L S K+L
Sbjct: 142 IDVSHNTQLTEL----DCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN 197
Query: 227 CDN--IRTLTVE-----EGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIF-SKNEL----- 273
CD I L + + CSS+ L + + LT S N L
Sbjct: 198 CDTNNITKLDLNQNIQLTFLDCSSNK-------LTEIDVTPLTQLTYFDCSVNPLTELDV 250
Query: 274 --PATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG- 330
+ L +L L + + + ++L + + ++ + + + L +L
Sbjct: 251 STLSKLTTLHCIQTD--LLEIDLTHNTQLIYF--QAEGCRKIKELDVTHNTQLYLLDCQA 306
Query: 331 -------LHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLS 383
L + +L + + + L KL +L + ++ + +
Sbjct: 307 AGITELDLSQNPKLVYLYLNNT-ELTELDVSHNT--KLKSLSCVNAH-IQDFS-SVGKIP 361
Query: 384 TLQDLTIGGA-LLSLEEDGLPTNLHSLVIRGN 414
L + +++ ++ L N ++ + +
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 47/260 (18%), Positives = 75/260 (28%), Gaps = 33/260 (12%)
Query: 277 LESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQ 336
+++ L +L SL + + ++ T L + + N+ L L +
Sbjct: 33 TDTISEEQLA-TLTSLDCHNS-SITDMTG-IEKLTGLTKLICTSN-NITTLD--LSQNTN 86
Query: 337 LREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLS 396
L ++ S L + L KLT L K L L + L L L+
Sbjct: 87 LTYLACDSN-KLTNLDVTPLT--KLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLT 140
Query: 397 LEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDK 456
+ T L L N +I K + + L L + +
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTP------QTQLTTLDCSFNK----ITELDVSQN 190
Query: 457 RLGTVLRLPTT-LTSLRIEDFPNLERL--------SSSIIDLRNLTELVLRGCPKLKYFP 507
+L L T +T L + L L + L LT L
Sbjct: 191 KLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVN-PLTELD 249
Query: 508 EKGLPSSLLELWISGCPLIE 527
L L L L+E
Sbjct: 250 VSTLS-KLTTLHCIQTDLLE 268
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 56/387 (14%), Positives = 110/387 (28%), Gaps = 86/387 (22%)
Query: 123 LEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSS--LVSFPEVALPSKLKKIQIGECDA 180
+ + E + S L + C + + + + L K+ +
Sbjct: 20 FASEVAAAFE---MQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN- 75
Query: 181 LKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQ 240
+ +L + N++L L+ + LT + L L L
Sbjct: 76 ITTLDLS----QNTNLTYLACDSNK-LTNLDVTPLTK-LTYLNCDTNK------------ 117
Query: 241 CSSSSRRYTSYLLEHLGIRYCPSLTCIF-SKNELPATLESLEVGNLPPSLKSLRVRYCSK 299
L L + P LT + ++N L ++V + L L K
Sbjct: 118 ------------LTKLDVSQNPLLTYLNCARNTL----TEIDVSHNT-QLTELDCHLNKK 160
Query: 300 LESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCA 359
+ + + T L T+ + L + + L ++ + N+
Sbjct: 161 ITKLD--VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NITKLDLNQNI-- 212
Query: 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWK 419
+LT L+ K L + + L+ L L+ + + L +L
Sbjct: 213 QLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD---L 266
Query: 420 SMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNL 479
I+ + L + +GC ++ D +
Sbjct: 267 LEID----LTHNTQLIYFQAEGC--------------------------RKIKELDVTHN 296
Query: 480 ERLSSSIIDLRNLTELVLRGCPKLKYF 506
+L +TEL L PKL Y
Sbjct: 297 TQLYLLDCQAAGITELDLSQNPKLVYL 323
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 88/506 (17%), Positives = 157/506 (31%), Gaps = 94/506 (18%)
Query: 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL 119
L EL + + I K N +L L ++ L S QL
Sbjct: 97 TNLTELHLMS----NSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGT-------QVQL 144
Query: 120 SCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSS--LVSFPEVALPS--KLKKIQI 175
L+ L+LS + + L + + ++ + SS + F + +L + +
Sbjct: 145 E-NLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202
Query: 176 GECDALKSLPEAW-MCDTNSSLEILSIHGCRSLTYIAAVQL----PSSLKMLTIWYCDNI 230
SL E + N+S+ LS+ L+ + ++L ML + Y N+
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYN-NL 260
Query: 231 RTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLK 290
+ + LE+ + Y ++ +FS + L ++ NL S
Sbjct: 261 NVVGNDSFAWLPQ---------LEYFFLEYN-NIQHLFSHS--LHGLFNVRYLNLKRSFT 308
Query: 291 SLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIG----SCG 346
+ S + LE +++ + + I + L L+ +S+ S
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 347 NLVSFPGGGLPCAKLTALEIYDCKRLKALPKG-LHNLSTLQDL-----TIGGALLSLEED 400
L + L + L L + ++ + L L+ L IG L E
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427
Query: 401 GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGT 460
GL N+ + + N + F SL+ L + L
Sbjct: 428 GLE-NIFEIYLSYNK---YLQLTRN-SFALVPSLQRLMLRRV--------------ALKN 468
Query: 461 VLRLPTTLTSLRIEDFPNLERLS------SSIID-----LRNLTELVLRGCPKLKYFPEK 509
V P+ L NL L ++I D L L L L+ L +
Sbjct: 469 VDSSPSPFQPL-----RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKH 522
Query: 510 GLP----------SSLLELWISGCPL 525
P S L L +
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGF 548
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 69/507 (13%), Positives = 152/507 (29%), Gaps = 97/507 (19%)
Query: 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL 119
L++L++++ I + I L L + + +L + E+ +
Sbjct: 171 SSLKKLELSS----NQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANT--- 222
Query: 120 SCRLEYLILSYCEGLVKLPQSSFS---LSSLREIEIFKCSSLVSFPEVALP--SKLKKIQ 174
+ L LS + L ++F ++L +++ + L + +L+
Sbjct: 223 --SIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFF 278
Query: 175 IGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLT 234
+ + ++ L + ++ L++ + I+ L + + + + L
Sbjct: 279 LEYNN-IQHLFSHSLHGL-FNVRYLNLKRSFTKQSISLASL-PKIDDFSFQWLKCLEHLN 335
Query: 235 VE----EGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI-FSKNEL-PATLESLEVGNLP-P 287
+E GI+ + +L + S + TL + +L
Sbjct: 336 MEDNDIPGIKSNM--------------FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCG 346
L L + + ++ LE + + E + L L + EI +
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441
Query: 347 NLVSFPG--GGLPCAKLTALEIYDCK--RLKALPKGLHNLSTLQDLTIGG-ALLSLEEDG 401
L +P L L + + + P L L L + + ++ +D
Sbjct: 442 YLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499
Query: 402 LP--TNLHSLVIRGNM--EIWKSMIEWG--RGFHRFSSLRHLTIDGCDDDTMMVSFPLED 455
L L L ++ N +WK G S L L ++
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG------------ 547
Query: 456 KRLGTVLRLPTTLTSLRIEDFPNLERL--------------SSSIIDLRNLTELVLRGCP 501
+ +E F +L L +S + +L L L+
Sbjct: 548 ------------FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN- 594
Query: 502 KLKYFPE---KGLPSSLLELWISGCPL 525
+ + +L EL + P
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPF 621
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
Query: 284 NLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIG 343
+LP ++ L + + A + L ++ + K+ P KL L+ +++
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 344 SCGNLVSFPGGGL-PCAKLTALEIYDCKRLKALPKG-LHNLSTLQDLTIGGALLSLEEDG 401
L C LT L + ++ + L L + LS + G
Sbjct: 82 HN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 402 LPTNLHSL 409
L +L
Sbjct: 140 TQVQLENL 147
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 54/271 (19%), Positives = 88/271 (32%), Gaps = 74/271 (27%)
Query: 122 RLEYLILSYCEGLVKLPQSSFS-LSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDA 180
LE + +S + L + FS L L EI I K ++L+ +A
Sbjct: 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP---------------EA 99
Query: 181 LKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQ 240
++LP +L+ L I + ++ V SL+ + + DNI T+E
Sbjct: 100 FQNLP---------NLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-- 147
Query: 241 CSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKL 300
F L L + +
Sbjct: 148 --------------------------SFV--------------GLSFESVILWLNKN-GI 166
Query: 301 ESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCGNLVSFPGGGLPCA 359
+ I N T L+ +++ + NL+ LP+ H + I S + S P GL
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI-SRTRIHSLPSYGL--E 223
Query: 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTI 390
L L LK LP L L L + ++
Sbjct: 224 NLKKLRARSTYNLKKLPT-LEKLVALMEASL 253
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 59/441 (13%), Positives = 133/441 (30%), Gaps = 86/441 (19%)
Query: 122 RLEYLILSYCEGLVKLPQSSFSLSSLREIEI----FKCSSLVSFP-EVALPSKLKKIQIG 176
R+ L L ++P + L+ L + + K + + P ++ ++ Q
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 177 ECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI-AAVQLPSSLKMLTIWYCDNIRTLTV 235
K+ + + S L I+ I + ++ + +NI ++
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNITFVSK 200
Query: 236 EEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295
+ + L + N+ + ++
Sbjct: 201 AVM-RLTK---------LRQFYMGNS-----------------PFVAENICEAWENENSE 233
Query: 296 YCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGG 355
Y + ++ + DN L + +YNC NL LP+ L L +++ I++ +S
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLK 292
Query: 356 LPCAKLTALEIYDCKRLKAL------------PKGLHNLSTLQDLTIGGALLSLEEDGLP 403
L + ++++ + L + L L L G
Sbjct: 293 DDWQALA--DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE----GKL 346
Query: 404 ------TNLHSLVIRGNM--EIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLED 455
L SL + N EI + + +L+ L+
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANF------CGFTEQVENLSFAHNK---------LKY 391
Query: 456 KRLGTVLRLPTTLTSLRIE-------DFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE 508
+ + ++++ D N + L + N++ + L ++ FP+
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPK 450
Query: 509 K--GLPSSLLELWISGCPLIE 527
+ S L + + G L E
Sbjct: 451 ELFSTGSPLSSINLMGNMLTE 471
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 54/431 (12%), Positives = 129/431 (29%), Gaps = 67/431 (15%)
Query: 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLR 148
L + I S P+ +S+ ++ +++ + + + + ++ L+ LR
Sbjct: 160 DLIKDCINSDPQQKSI---------KKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLR 209
Query: 149 EIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTN-SSLEILSIHGCRSL 207
+ + F + + K+ W N L + ++ C +L
Sbjct: 210 QFYMGNSP----FVAENICEAWENENSEYAQQYKTEDLKW---DNLKDLTDVEVYNCPNL 262
Query: 208 TYIAAV--QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLT 265
T + LP ++++ + + + + + +
Sbjct: 263 TKLPTFLKALPE-MQLINVACN-RGISGEQLKDDWQALAD------------APVGEKIQ 308
Query: 266 CI-FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENL 324
I N L + + L L Y +LE + L ++++ +
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMK-KLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYN-QI 365
Query: 325 KILPSGL-HKLHQLREISIGSCGNLVSFP--GGGLPCAKLTALEIY-------DCKRLKA 374
+P+ Q+ +S L P + ++A++ D K
Sbjct: 366 TEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424
Query: 375 LPKGLHNLSTLQDLTIGGALLS---LEEDGLPTNLHSLVIRGNM--EIWKSMIEWG-RGF 428
L + + + +S E + L S+ + GNM EI K+ ++ F
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484
Query: 429 HRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPN-LERLSSSII 487
L + + + + LP L + + N + + +
Sbjct: 485 KNTYLLTSIDLRFN----KLTKLSDD----FRATTLPY-LVGIDLSY--NSFSKFPTQPL 533
Query: 488 DLRNLTELVLR 498
+ L +R
Sbjct: 534 NSSTLKGFGIR 544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 28/232 (12%), Positives = 63/232 (27%), Gaps = 34/232 (14%)
Query: 307 LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGS----CGNLVSFPGGGLPCAKLT 362
L++N + +S+ +P + +L +L +++GS + P G
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 363 ALEIYDCKRLKALPKGLH--NLSTLQDLTIGGALLSL---EEDGLPTNLHSLVIRGNM-- 415
+ K + S L I + + + N
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196
Query: 416 EIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475
+ K+ R + LR + + + E
Sbjct: 197 FVSKA-------VMRLTKLRQFYMGNSPF---------------VAENICEAWENENSEY 234
Query: 476 FPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-GLPSSLLELWISGCPLI 526
+ +L++LT++ + CP L P + + ++ I
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 51/321 (15%), Positives = 95/321 (29%), Gaps = 69/321 (21%)
Query: 122 RLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKC---------SSLVSFPEVALPSKLKK 172
L + + C L KLP +L ++ I + + + + K++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309
Query: 173 IQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPS-----SLKMLTIWYC 227
I IG + LK+ P L +L + L LP+ L L + Y
Sbjct: 310 IYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGK----LPAFGSEIKLASLNLAYN 363
Query: 228 DNIRTLTVEEGIQCSSSSRRYTSYLLEHL--------------GIRYCPSLTCI-FSKNE 272
I + +E+L + ++ I FS NE
Sbjct: 364 -QITEIPANFCGFTEQ---------VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Query: 273 LPATLESLEVGNLPP------SLKSLRVRYCSKLES-IAERLDNNTSLETISIYNC---- 321
+ +++ L P ++ S+ + ++ E + L +I++
Sbjct: 414 I-GSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTE 471
Query: 322 ---ENLKILPSGLHKLHQLREISIGSCGNLVSFP----GGGLPCAKLTALEIYDCKRLKA 374
+LK + L I + L LP L +++
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLP--YLVGIDLSYN-SFSK 527
Query: 375 LPKGLHNLSTLQDLTIGGALL 395
P N STL+ I
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRD 548
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 77/429 (17%), Positives = 138/429 (32%), Gaps = 76/429 (17%)
Query: 123 LEYLILSYCEGLVKLPQSSF-SLSSLREIEIFKCSSLVSFPEVAL--PSKLKKIQIGECD 179
L +L L+ C+ + + + +F S L + + L+ E AL P LK + +
Sbjct: 59 LTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQT- 115
Query: 180 ALKSLPEAWMCDTNSSLEILSIHGCR--SLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEE 237
+ S+ + + +LE L + S+ LK+L I L+ E
Sbjct: 116 GISSIDFIPLHN-QKTLESLYLGSNHISSIKLPKGFPTEK-LKVLDFQNN-AIHYLSKE- 171
Query: 238 GIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYC 297
+ L + +L+ + N++ + +SL
Sbjct: 172 --------------DMSSL--QQATNLSLNLNGNDI--AGIEPGAFDSA-VFQSLNFGGT 212
Query: 298 SKLESIAERLDNNT--SLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGG 355
L I + L N+T SL + + ++ I P+ L ++ SI +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 356 L--PCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSLV--- 410
+ L L++ L LP GL LSTL+ L + +N SL
Sbjct: 273 TFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 411 IRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTS 470
I+GN + + +LR L + + T L +
Sbjct: 332 IKGNTKRLELGTG---CLENLENLRELDLSHD--------------DIETSDCCNLQLRN 374
Query: 471 LRIEDFPNLERL-----------SSSIIDLRNLTELVLRGCPKLKYFPEKGL---PSSLL 516
L +L+ L + + + L L L +LK + L
Sbjct: 375 L-----SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLK 428
Query: 517 ELWISGCPL 525
L +S L
Sbjct: 429 VLNLSHSLL 437
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 38/257 (14%), Positives = 78/257 (30%), Gaps = 33/257 (12%)
Query: 283 GNLPPSLKSLRVRYCSKLESIAER-LDNNTSLETISIYNCENLKILPSGLHKLHQLREIS 341
G LP S + L + L +I +L + + C+ I H+L +
Sbjct: 29 GTLPNSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87
Query: 342 IGSCGNLVSFPGGGL-PCAKLTALEIYDCKRLKALPKG-LHNLSTLQDLTIGG-ALLSLE 398
+ + L+ L L L + ++ LHN TL+ L +G + S++
Sbjct: 88 LTAN-PLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIK 145
Query: 399 EDGLP--TNLHSLVIRGN--MEIWKSMIEWGRGFHRFSSLRHLTID------GCDDDTMM 448
L L + N + K +L+++ +
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKED------MSSLQQATNLSLNLNGNDIAGIEPGAF 199
Query: 449 VSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE 508
S + G L L+ +L + +D +++ V G ++
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM----- 254
Query: 509 KGLPSSLLELWISGCPL 525
S+ + +
Sbjct: 255 -----SVESINLQKHYF 266
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 66/437 (15%), Positives = 140/437 (32%), Gaps = 86/437 (19%)
Query: 120 SCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECD 179
L L+ + + + +F + + + +L+ + S ++ + +G +
Sbjct: 178 QATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236
Query: 180 --ALKSLPEAWMCD-TNSSLEILSIHGCRSLTYIAAVQLP--SSLKMLTIWYCDNIRTLT 234
+ + A S+E +++ I++ S L+ L + ++ L
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTAT-HLSEL- 293
Query: 235 VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLR 293
G+ +L + S N+ L + N P SL L
Sbjct: 294 --------------------PSGLVGLSTLKKLVLSANKF-ENLCQISASNFP-SLTHLS 331
Query: 294 VRYCSKLESIAER-LDNNTSLETISIYNC--ENLKILPSGLHKLHQLREISIGSCGNLVS 350
++ +K + L+N +L + + + E L L L+ +++ +S
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLS 390
Query: 351 FPGGGL-PCAKLTALEIYDCKRLKALPKG--LHNLSTLQDLTIGGALLSLEEDGLPTNLH 407
C +L L++ RLK NL L+ L + +LL + + L L
Sbjct: 391 LKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449
Query: 408 SLV---IRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRL 464
+L ++GN ++ + L L + CD
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTN-SLQTLGRLEILVLSFCD--------------------- 487
Query: 465 PTTLTSLRIEDFPNLERLSSSIIDLRN-----LTELVLRGCPKL---------KYFPEKG 510
L+S+ F +L+ ++ +DL + + L +
Sbjct: 488 ---LSSIDQHAFTSLKMMNH--VDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL 542
Query: 511 LP--SSLLELWISGCPL 525
LP S + + PL
Sbjct: 543 LPILSQQRTINLRQNPL 559
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 67/513 (13%), Positives = 136/513 (26%), Gaps = 106/513 (20%)
Query: 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRL--------------TITSCPKLQSL- 104
LE L + + + + + +LK+L ++ L +
Sbjct: 104 TSLENLVAVETK----LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159
Query: 105 -----VAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLV 159
+ + Q L + L +S + + +F L E+ + +
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSS 218
Query: 160 SFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL---- 215
+ + L L + + + +LEI L + +
Sbjct: 219 NIMKTCL-QNLAGLHVHRLILGEFK-------DERNLEIFEPSIMEGLCDVTIDEFRLTY 270
Query: 216 --PSSLKMLTIWYCDNIRTL--------TVEEGIQCSSSSRRYTSYL-LEHLGIRYCPSL 264
S ++ N+ + +E+ + L+ P L
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL 330
Query: 265 TCI-FSKNELPATLESLEVGNLPPSLKSLRVRYC--SKLESIAERLDNNTSLETISIYNC 321
+ + N+ S + LP SL L + S + SL + +
Sbjct: 331 KSLTLTMNKG---SISFKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
Query: 322 ENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGL--PCAKLTALEIYDCKRLKALPKG- 378
I+ + L +L+ + L KL L+I K G
Sbjct: 387 -GAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGI 443
Query: 379 LHNLSTLQDLTIGG-ALLSLEEDGL---PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSL 434
L++L L + G + + TNL L + + I WG F L
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-L--EQISWGV-FDTLHRL 499
Query: 435 RHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTE 494
+ L + + + S L +L+
Sbjct: 500 QLLNMSHN-----------------------------NLLFLDS-----SHYNQLYSLST 525
Query: 495 LVLRGCPKLKYFPEK--GLPSSLLELWISGCPL 525
L +++ P SL ++ +
Sbjct: 526 LDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 51/346 (14%), Positives = 99/346 (28%), Gaps = 43/346 (12%)
Query: 190 CDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYT 249
C + L+ + +PSS K + + + ++ L S S ++
Sbjct: 7 CIEVVPNITYQCMD-QKLSKVPD-DIPSSTKNIDLSFN-PLKILK-------SYSFSNFS 56
Query: 250 SYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDN 309
L+ L + C + I L L +L +
Sbjct: 57 E--LQWLDLSRC-EIETIE-----DKAWHGL------HHLSNLILTGNPIQSFSPGSFSG 102
Query: 310 NTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGL--PCAKLTALEIY 367
TSLE + + + + +L L+++++ + S L +++
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLS 161
Query: 368 DCKRLKALPK----GLHNLS-TLQDLTIGGALLSLEEDGL--PTNLHSLVIRGNMEIWKS 420
++ + L L + + +D LH L +RGN
Sbjct: 162 YNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220
Query: 421 MIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLP-TTLTSLRIEDFPNL 479
M +L L + LE + L T+ R+ +
Sbjct: 221 MKT------CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274
Query: 480 ERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525
L N++ + L G +KY + L I C L
Sbjct: 275 SDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQL 319
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 65/409 (15%), Positives = 126/409 (30%), Gaps = 86/409 (21%)
Query: 123 LEYLILSYCEGLVKLPQSSFS-LSSLREIEIFKCSSLVSFPEVALP--SKLKKIQIGECD 179
+ + LS+ L L SFS S L+ +++ +C + + + A L + +
Sbjct: 34 TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91
Query: 180 ALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--SSLKMLTIWYCDNIRTLTVEE 237
++S +SLE L L + + + +LK L + + I + +
Sbjct: 92 -IQSFSPGSFSG-LTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN-FIHSCKLPA 147
Query: 238 GIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYC 297
++ L H+ + Y + I L+ L P SL +
Sbjct: 148 YFSNLTN--------LVHVDLSYN-YIQTI-----TVNDLQFLR--ENPQVNLSLDMSLN 191
Query: 298 SKLESIAERLDNNTSLETISI-YNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGL 356
++ I ++ L +++ N + I+ + L L L + G
Sbjct: 192 -PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL-ILGEFKDER---- 245
Query: 357 PCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNME 416
L E + L + L+ D + L N+ ++ + G
Sbjct: 246 ---NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH----CLA-NVSAMSLAGVS- 296
Query: 417 IWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDF 476
I++ + + L+ + +++ F
Sbjct: 297 -----IKYLEDVPKHFKWQSLS-----------------------------IIRCQLKQF 322
Query: 477 PNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525
P L DL L L L F + LP SL L +S L
Sbjct: 323 PTL--------DLPFLKSLTLTMNKGSISFKKVALP-SLSYLDLSRNAL 362
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 64/310 (20%), Positives = 118/310 (38%), Gaps = 53/310 (17%)
Query: 122 RLEYLILSYCEGLVKLPQSSFS-LSSLREIEIFKCSSLVSFPEVAL--PSKLKKIQIGEC 178
LE L L+ + + +F+ L +LR + + L P S L K+ I E
Sbjct: 57 HLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN 114
Query: 179 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA---VQLPSSLKMLTIWYCDNIRTLTV 235
+ L + D +L+ L + L YI+ L S L+ LT+ C N+ ++
Sbjct: 115 K-IVILLDYMFQD-LYNLKSLEVGDND-LVYISHRAFSGLNS-LEQLTLEKC-NLTSIP- 168
Query: 236 EEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI-FSKNEL----PATLESLEVGNLPPSLK 290
+ L HL L + + + + L LK
Sbjct: 169 --------------TEALSHL-----HGLIVLRLRHLNINAIRDYSFKRL------YRLK 203
Query: 291 SLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCGNLV 349
L + + L+++ +L ++SI +C NL +P + L LR +++ +
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN-PIS 261
Query: 350 SFPGGGL-PCAKLTALEIYDCKRLKALPKG-LHNLSTLQDLTIGG-ALLSLEEDGL--PT 404
+ G L +L +++ + L + L+ L+ L + G L +LEE
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 405 NLHSLVIRGN 414
NL +L++ N
Sbjct: 321 NLETLILDSN 330
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 48/270 (17%), Positives = 92/270 (34%), Gaps = 45/270 (16%)
Query: 261 CPSL-TCIFSKNELPATLESLEV--GNLPPSLKSLRVRYCSKLESIAER-LDNNTSLETI 316
CP C + + +P + L + +++++ + + LE +
Sbjct: 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKN-RIKTLNQDEFASFPHLEEL 61
Query: 317 SIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGG---GLPCAKLTALEIYDCKRLK 373
+ + P + L LR + + S L P G GL LT L+I + ++
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLS--NLTKLDISEN-KIV 117
Query: 374 ALPKGL-HNLSTLQDLTIGG-ALLSLEED---GLPTNLHSLVIRGNMEIWKSMIEWGRGF 428
L + +L L+ L +G L+ + GL +L L + + + I
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKC-NL--TSIPTE-AL 172
Query: 429 HRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIID 488
L L + + R + RL L L I +P L+ ++ + +
Sbjct: 173 SHLHGLIVLRLRHL---------NINAIRDYSFKRLYR-LKVLEISHWPYLDTMTPNCLY 222
Query: 489 LRNLTELVL-------------RGCPKLKY 505
NLT L + R L++
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 10/138 (7%)
Query: 257 GIRYCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLET 315
GI Y ++ + + + L +L+ LR+ L TSL
Sbjct: 61 GIEYAHNIKDLTINNIHA-TNYNPIS--GLS-NLERLRIMGKDVTSDKIPNLSGLTSLTL 116
Query: 316 ISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKA 374
+ I + + + + ++ L ++ I + G + LP +L +L I +
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP--ELKSLNIQFDG-VHD 173
Query: 375 LPKGLHNLSTLQDLTIGG 392
+G+ + L L
Sbjct: 174 Y-RGIEDFPKLNQLYAFS 190
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 40/251 (15%), Positives = 72/251 (28%), Gaps = 54/251 (21%)
Query: 287 PSLKSLRVRYC--SKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGS 344
L L + S ++ TSL+ + + + + S L QL +
Sbjct: 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQH 110
Query: 345 CGNLVSFPGGGL--PCAKLTALEIYDCKRLKALPKG-LHNLSTLQDLTIGG--ALLSLEE 399
NL + L L+I + G + LS+L+ L + G +
Sbjct: 111 S-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
Query: 400 DGLP--TNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKR 457
D NL L + ++ + F+ SSL+ L + +
Sbjct: 169 DIFTELRNLTFLDLSQC-QL--EQLSPT-AFNSLSSLQVLNMSHNN-------------- 210
Query: 458 LGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE---KGLPSS 514
SL + L +L L + + + PSS
Sbjct: 211 ----------FFSLDTFPYKC----------LNSLQVLDYSLN-HIMTSKKQELQHFPSS 249
Query: 515 LLELWISGCPL 525
L L ++
Sbjct: 250 LAFLNLTQNDF 260
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 287 PSLKSLRVRYCSKLESIAERL-DNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGS 344
P++ + V L+ + N + + I I N NL + L +L L+ + I +
Sbjct: 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114
Query: 345 CGNLVSFPGGGL--PCAKLTALEIYDCKRLKALP----KGLHNLSTLQDLTIGG-ALLSL 397
G L FP LEI D + ++P +GL N L + S+
Sbjct: 115 TG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGFTSV 171
Query: 398 EEDGL-PTNLHSLVIRGNMEI 417
+ T L ++ + N +
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYL 192
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 40/267 (14%), Positives = 86/267 (32%), Gaps = 76/267 (28%)
Query: 121 CRLEYLILSYCEGLVKLPQSSFSLSSLREIEI------------FKCSSL--VSFP---- 162
++ ++L+ EGL + +F S+++EI + C +L
Sbjct: 135 SQIAKVVLN--EGLKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKI 192
Query: 163 --------------EVALPSKLKKIQIG---ECDALKS--LPEAWMCDTNSSLEILSIHG 203
EV LP LK+I + LK+ +P + S++ +
Sbjct: 193 TKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIP-----ENVSTIGQEAFRE 247
Query: 204 CRSLTYIAAVQLPSSLKMLTIW---YCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRY 260
+T + +LP+ + + YC + +T Y LE
Sbjct: 248 S-GITTV---KLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-----G 298
Query: 261 CPSLTCIFSKNELPATLESLEVG-----------NLPPSLKSLRVR--YCSKLESIAERL 307
CP L E+P ++ L G +P ++ + + ++ +
Sbjct: 299 CPKLARF----EIPESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNTGIKEVKVEG 354
Query: 308 DNNTSLETISIYNC-ENLKI--LPSGL 331
+ Y +++ + +P+
Sbjct: 355 TTPPQVFEKVWYGFPDDITVIRVPAES 381
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 47/291 (16%), Positives = 83/291 (28%), Gaps = 62/291 (21%)
Query: 288 SLKSLRVRYCS----KLESIAERLDNNTSLETISIYNC----ENLKILPSGLHKLHQLRE 339
S++ ++ + +S+ L + S++ I + E + L + L
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 340 ISIGSC--GNLVSFPGGGLP--------CAKLTALEIYDC----KRLKALPKGLHNLSTL 385
G + L C KL + + D + L L + L
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 386 QDL-------------TIGGALLSL---EEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFH 429
+ L I AL L ++ L S++ N SM EW + F
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 430 RFSSLRHLTIDGCD--DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNL------ER 481
L + + + + L L L L ++D N
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIE-------HLLLEGLAYCQELKVLDLQD--NTFTHLGSSA 235
Query: 482 LSSSIIDLRNLTELVLR-------GCPKLKYFPEKGLPSSLLELWISGCPL 525
L+ ++ NL EL L G + K L L + +
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 54/443 (12%), Positives = 114/443 (25%), Gaps = 94/443 (21%)
Query: 114 QQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKI 173
+ L Q+ L LS + + +F L ++ + ++ +
Sbjct: 170 RVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-------- 220
Query: 174 QIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTL 233
L L L + +L S+L+ L + R
Sbjct: 221 ----IQGLAGL-------EVHRLVLGEFRNEGNLEKFD----KSALEGLCNLTIEEFRLA 265
Query: 234 TVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLR 293
++ + + + + ++ + + + LE+ N
Sbjct: 266 YLDYYLDDIIDLFNCLTNV-SSFSLVSV-TIERVKDFSYNFG-WQHLELVNC--KFGQFP 320
Query: 294 VRYCSKLESIAERLDNNTSLETISIYNCENLKIL-------------PSGLHKLHQLREI 340
L+ + +N S + +L+ L L+ +
Sbjct: 321 TLKLKSLKRL--TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 341 SIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKG-LHNLSTLQDLTIGGALLSLEE 399
+ +++ L +L L+ + +L L L I +
Sbjct: 379 DLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 400 DGLPTNLHSLV---IRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDK 456
+G+ L SL + GN ++ F +L L + C
Sbjct: 438 NGIFNGLSSLEVLKMAGNS--FQENFLPD-IFTELRNLTFLDLSQCQ------------- 481
Query: 457 RLGTVLRLPTTLTSLRIEDFPNLERL--------------SSSIIDLRNLTELVLRGCPK 502
L L F +L L + L +L L
Sbjct: 482 -----------LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-H 529
Query: 503 LKYFPE---KGLPSSLLELWISG 522
+ + + PSSL L ++
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQ 552
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 284 NLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIG 343
NLP S K+L + + + + L+ + + CE I L L + +
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 344 SCGNLVSFPGGGL-PCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED- 400
+ S G + L L + + +L TL++L + + S +
Sbjct: 85 GN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 401 --GLPTNLHSLVIRGN 414
TNL L + N
Sbjct: 144 YFSNLTNLEHLDLSSN 159
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 70/411 (17%), Positives = 148/411 (36%), Gaps = 82/411 (19%)
Query: 123 LEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKI-----QIGE 177
+L + Q+ L + ++ + + S V + L +I Q+ +
Sbjct: 26 KMKTVLGKTNVTDTVSQTD--LDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQLTD 82
Query: 178 CDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYC-----DNIRT 232
LK+L L + ++ + + I + ++L LT++ D ++
Sbjct: 83 ITPLKNLT---------KLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITDIDPLKN 132
Query: 233 LTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 292
LT ++ SS++ + + + SL + N++ + + NL +L+ L
Sbjct: 133 LTNLNRLELSSNT------ISDISALSGLTSLQQLSFGNQV---TDLKPLANLT-TLERL 182
Query: 293 RVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFP 352
+ K+ I+ L T+LE++ N + + L L L E+S+ L
Sbjct: 183 DISSN-KVSDISV-LAKLTNLESLIATNN-QISDIT-PLGILTNLDELSLNGN-QLKDIG 237
Query: 353 G-GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLV 410
L LT L++ + + + L L L+ L +L +G + ++ T L +L
Sbjct: 238 TLASLT--NLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLE 293
Query: 411 IRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTS 470
+ N +E +L +LT+ + D + + T L
Sbjct: 294 LNENQ------LEDISPISNLKNLTYLTLYFN---------NISDI---SPVSSLTKLQR 335
Query: 471 L-----RIEDFPNLERLS---------------SSIIDLRNLTELVLRGCP 501
L ++ D +L L+ + + +L +T+L L
Sbjct: 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 50/260 (19%), Positives = 90/260 (34%), Gaps = 51/260 (19%)
Query: 277 LESLE-VGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLH 335
++S++ V L +L + +L I L N T L I + N + I + L L
Sbjct: 58 IKSIDGVEYLN-NLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADI--TPLANLT 112
Query: 336 QLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALL 395
L +++ + P L L LE+ + + L L++LQ L+ G +
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQVT 168
Query: 396 SLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLED 455
L+ T L L I N ++ S I + ++L L
Sbjct: 169 DLKPLANLTTLERLDISSN-KV--SDIS---VLAKLTNLESLIATNNQ------------ 210
Query: 456 KRLGTVLRLPTTLTSLR-IEDFPNLERLS---------SSIIDLRNLTELVLRGCPKLKY 505
++ + + NL+ LS ++ L NLT+L L ++
Sbjct: 211 ------------ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISN 257
Query: 506 FPEKGLPSSLLELWISGCPL 525
+ L EL + +
Sbjct: 258 LAPLSGLTKLTELKLGANQI 277
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 16/162 (9%)
Query: 287 PSLKSLRVRYCSKLESIAER-LDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGS 344
SL +L + L I + + L + + N ++ +PS +++ L + +G
Sbjct: 123 ASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGE 180
Query: 345 CGNLVSFPGG---GLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDG 401
L G GL L L + C +K +P L L L++L + G G
Sbjct: 181 LKKLEYISEGAFEGLF--NLKYLNLGMC-NIKDMPN-LTPLVGLEELEMSGNHFPEIRPG 236
Query: 402 LPTNLHSLVIRG--NMEIWKSMIEWGRGFHRFSSLRHLTIDG 441
L SL N ++ S+IE F +SL L +
Sbjct: 237 SFHGLSSLKKLWVMNSQV--SLIERN-AFDGLASLVELNLAH 275
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 40/286 (13%), Positives = 78/286 (27%), Gaps = 58/286 (20%)
Query: 302 SIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGL-PCAK 360
+I E N + + + + L S ++E+ + L L P K
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59
Query: 361 LTALEIYDCKRLKALP--KGLHNLSTL-------QDLTIGGALLSLE---------EDGL 402
L L + L + L L TL Q+L +G ++ +L
Sbjct: 60 LELLNLSSNV-LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118
Query: 403 PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVL 462
++ + N +I +M+ S +++L + ++ +
Sbjct: 119 GQGKKNIYLANN-KI--TMLRDL-DEGCRSRVQYLDLKLN---------EIDTVNFAELA 165
Query: 463 RLPTTLTSL-----RIEDFP----------------NLERLSSSIIDLRNLTELVLRGCP 501
TL L I D L + +T + LR
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN- 224
Query: 502 KLKYFPEK-GLPSSLLELWISGCPLIEEKCRKDGGQYWDLLTHIPL 546
KL + +L + G +D + +
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAK 269
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 35/219 (15%), Positives = 77/219 (35%), Gaps = 28/219 (12%)
Query: 287 PSLKSLRVRYCSKLESIAER-LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSC 345
+L +L + K+ I+ LE + + LK LP + L+E+ +
Sbjct: 76 KNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--PKTLQELRVHEN 131
Query: 346 GNLVSFPGG---GLPCAKLTALEIYDCK-RLKALPKG-LHNLSTLQDLTIGGALLSLEED 400
+ GL ++ +E+ + + G + L + I ++
Sbjct: 132 -EITKVRKSVFNGLN--QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188
Query: 401 GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGT 460
GLP +L L + GN +I + ++ ++L L + + G+
Sbjct: 189 GLPPSLTELHLDGN-KI--TKVD-AASLKGLNNLAKLGLSFN---------SISAVDNGS 235
Query: 461 VLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRG 499
+ P L L + + L ++ + D + + + L
Sbjct: 236 LANTP-HLRELHL-NNNKLVKVPGGLADHKYIQVVYLHN 272
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 18/163 (11%)
Query: 287 PSLKSLRVRYCSKLESIAER-LDNNTSLETISIYNCENLKILPSGL-HKLHQLREISIGS 344
+L +L + +L +I + L+ + + N ++ +PS +++ LR + +G
Sbjct: 112 ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGE 169
Query: 345 CGNLVSFPGG---GLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED 400
L G GL L L + C L+ +P L L L +L + G L ++
Sbjct: 170 LKRLSYISEGAFEGLS--NLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGNHLSAIRPG 225
Query: 401 GLP--TNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441
+L L + + +I +IE F SL + +
Sbjct: 226 SFQGLMHLQKLWMIQS-QI--QVIERN-AFDNLQSLVEINLAH 264
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 52/356 (14%), Positives = 104/356 (29%), Gaps = 78/356 (21%)
Query: 194 SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLL 253
S+ L + G + + I ++ ++L+ L + +T + L
Sbjct: 44 ESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGNQ----ITDISPLSNLVK--------L 90
Query: 254 EHLGIRYCPSLTCIFSKNELPATLESLEVGN-----LPP-----SLKSLRVRYCSKLESI 303
+L I +T I + L L L + + P + SL + L +
Sbjct: 91 TNLYIGTN-KITDISALQNLT-NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDL 148
Query: 304 AERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLT 362
+ L N T L +++ + + + + L L +S+ + L L
Sbjct: 149 SP-LSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYN-QIEDISPLASLT--SLH 202
Query: 363 ALEIYDCKRLKALPKGLHNLSTLQDLTIGGALLS-LEEDGLPTNLHSLVIRGNMEIWKSM 421
Y + + + + N++ L L IG ++ L + L L I N
Sbjct: 203 YFTAYVNQ-ITDIT-PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ------ 254
Query: 422 IEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLR-IEDFPNLE 480
I + L+ L + ++ + + + L
Sbjct: 255 ISDINAVKDLTKLKMLNVGS------------------------NQISDISVLNNLSQLN 290
Query: 481 RLS-----------SSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525
L I L NLT L L + S + + +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQVI 345
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 42/254 (16%), Positives = 78/254 (30%), Gaps = 42/254 (16%)
Query: 117 CQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIG 176
+ + ILS C L L SL LR S +A S L ++ +
Sbjct: 103 SVIEVSTLHGILSQCSKLQNL-----SLEGLR-------LSDPIVNTLAKNSNLVRLNLS 150
Query: 177 ECDALKSLPEAWMCDTNSSLEILSIHGCRSLT----YIAAVQLPSSLKMLTIWYCDNIRT 232
C + + S L+ L++ C T +A + ++ L + +
Sbjct: 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY--RKN 208
Query: 233 LTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 292
L + + L HL + L + + L+ L
Sbjct: 209 LQ-KSDLSTLVRRCP----NLVHLDLSDSVMLKN-----------DCFQEFFQLNYLQHL 252
Query: 293 RVRYCSKLESIA-ERLDNNTSLETISIYNC---ENLKILPSGLHKL----HQLREISIGS 344
+ C + L +L+T+ ++ L++L L L I+ +
Sbjct: 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPT 312
Query: 345 CGNLVSFPGGGLPC 358
GN + G+ C
Sbjct: 313 IGNKKNQEIWGIKC 326
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 9e-04
Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 23/175 (13%)
Query: 287 PSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENL--KILPSGLHKLHQLREISIGS 344
L++L + + I L N++L +++ C L + L +L E+++
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177
Query: 345 CGNLVSFPGGGL---PCAKLTALEIYDCKR------LKALPKGLHNLSTLQDLT----IG 391
C + +T L + ++ L L + NL L DL+ +
Sbjct: 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL-DLSDSVMLK 236
Query: 392 GALLSLEEDGLPTNLHSLVIRGNMEI-WKSMIEWGRGFHRFSSLRHLTIDGCDDD 445
+E L L + +I ++++E G +L+ L + G D
Sbjct: 237 ND--CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI----PTLKTLQVFGIVPD 285
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 31/245 (12%), Positives = 59/245 (24%), Gaps = 62/245 (25%)
Query: 129 SYCEGL--VKLPQSSFSLSSLREIEIF---KCSSLVSFPEVALPSKLKKIQIGE--CDAL 181
+ L V L ++ IE C +L + K + E D++
Sbjct: 98 KGKQTLEKVILS------EKIKNIEDAAFKGCDNLKI---CQIRKKTAPNLLPEALADSV 148
Query: 182 KS----LPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKML---TIWYCDNIRTLT 234
+ L + + E + L ++ L + R +
Sbjct: 149 TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT---IQVGAMGKLEDEIMKAGLQPRDIN 205
Query: 235 VEEGI---------QCSSSSRRYTSYLLEHLGI--------RYCPSLTCIFSKNELPATL 277
S + L I +LP L
Sbjct: 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI----KLPHNL 261
Query: 278 ESLEVG------------NLPPSLKSLRVR---YCSKLESIAERLDNNTSLETISIYNCE 322
+++ LP S+ ++ C L + D T+L N
Sbjct: 262 KTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321
Query: 323 NLKIL 327
K++
Sbjct: 322 PSKLI 326
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 27/176 (15%)
Query: 287 PSLKSLRVRYCSKLESIAER-LDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGS 344
L+ LRV I + T LE + I +L+ L + + + +
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHM 207
Query: 345 CGNLVSFPGG---GLPCAKLTALEIYD----CKRLKALPKG----LHNLSTLQDLTIGGA 393
+ + LE+ D L G L T +++ I
Sbjct: 208 K-QHILLLEIFVDVTS--SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264
Query: 394 LLSLEEDGL--PTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG----CD 443
L L + L L N + + G F R +SL+ + + C
Sbjct: 265 SLFQVMKLLNQISGLLELEFSRNQ-L--KSVPDGI-FDRLTSLQKIWLHTNPWDCS 316
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 60/391 (15%), Positives = 128/391 (32%), Gaps = 58/391 (14%)
Query: 76 IWKSHNEL----LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYC 131
+ S L + I L + ++ +E+ + Q S + +
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLL-VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178
Query: 132 EGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCD 191
++ + + + L I+ + S+ +++ +KL+ L ++ W
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYF-LSILAKLQTNPKLSNLTLNNIETTWNSF 237
Query: 192 T-------NSSLEILSIHGCRSLTYIAAVQLP---SSLKMLTIWYCDNIRTLTVEEGIQC 241
++++ SI + + +SLK L+I + + I
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
Query: 242 SSSSRRYTS------YLLEHLGIRYCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLRV 294
S+ + ++ L + FS N L G+L L++L +
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLT-ELETLIL 355
Query: 295 RYC--SKLESIAERLDNNTSLETISIYNCENLKILPSGL-HKLHQLREISIGSCGNLVSF 351
+ +L IAE SL+ + I G L +++ S L
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDT 414
Query: 352 PGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLV 410
LP ++ L+++ K +K++PK + L LQ+L + L S+ +
Sbjct: 415 IFRCLP-PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGI--------- 463
Query: 411 IRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441
F R +SL+ + +
Sbjct: 464 -----------------FDRLTSLQKIWLHT 477
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.98 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.97 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.97 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.97 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.95 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.95 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.95 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.93 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.93 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.93 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.92 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.91 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.9 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.89 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.89 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.89 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.87 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.87 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.87 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.86 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.84 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.84 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.83 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.83 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.82 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.82 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.81 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.8 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.78 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.78 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.77 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.77 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.76 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.76 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.75 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.75 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.74 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.74 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.72 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.72 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.72 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.71 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.7 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.69 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.69 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.67 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.66 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.65 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.65 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.62 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.61 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.6 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.6 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.6 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.58 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.58 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.57 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.57 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.56 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.56 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.54 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.53 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.52 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.5 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.45 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.44 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.43 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.43 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.42 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.39 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.39 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.39 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.37 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.37 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.33 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.32 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.3 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.3 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.27 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.27 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.24 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.21 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.19 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.19 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.19 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.18 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.17 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.15 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.15 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.14 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.14 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.14 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.07 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.06 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.05 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.03 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.02 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.02 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.96 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.96 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.95 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.88 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.88 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.86 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.86 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.84 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.8 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.8 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.79 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.78 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.74 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.72 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.71 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.68 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.67 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.67 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.62 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.6 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.57 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.39 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.38 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.38 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.3 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.28 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.24 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.23 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.21 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.17 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.08 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.06 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.0 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.89 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.5 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.17 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.67 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.62 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 91.46 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 90.53 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 90.49 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 89.91 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=323.97 Aligned_cols=246 Identities=18% Similarity=0.103 Sum_probs=160.3
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|++|++++|.....++..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|.....+++|+.|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 57777777776655666677777777777777744333556777777778888887765444566555556678888888
Q ss_pred cCccccccccccccCCcccceeccc-ccc-cccc----------------------------------------------
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALL-SLEE---------------------------------------------- 399 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~-~l~~---------------------------------------------- 399 (551)
+|.....+|..+.++++|+.|++++ .+. .+|.
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 7665556777777788888887776 222 1211
Q ss_pred -------------------------CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccc
Q 008856 400 -------------------------DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLE 454 (551)
Q Consensus 400 -------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 454 (551)
...+++|++|++++|..... .+.. +..+++|+.|++++|. - ...+|..
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~---l~~l~~L~~L~Ls~N~-l--~g~ip~~ 675 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKE---IGSMPYLFILNLGHND-I--SGSIPDE 675 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC-CCGG---GGGCTTCCEEECCSSC-C--CSCCCGG
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCccccc-CCHH---HhccccCCEEeCcCCc-c--CCCCChH
Confidence 11246788888888874432 2332 6788889999999883 2 2366665
Q ss_pred cccccccccccccccccccccCCChh-hhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCchH----HHH
Q 008856 455 DKRLGTVLRLPTTLTSLRIEDFPNLE-RLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPLI----EEK 529 (551)
Q Consensus 455 ~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l----~~~ 529 (551)
. ..+++|+.|++++ |++. .+|..+..+++|++|++++|+.-..+|..+...++....+.+|+.+ -..
T Consensus 676 l-------~~L~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~ 747 (768)
T 3rgz_A 676 V-------GDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747 (768)
T ss_dssp G-------GGCTTCCEEECCS-SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCC
T ss_pred H-------hCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcC
Confidence 5 3678899999999 5665 6788888999999999999765567777666667777777776532 227
Q ss_pred hhccCcccccccCccccee
Q 008856 530 CRKDGGQYWDLLTHIPLVA 548 (551)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~ 548 (551)
|...++++|++++|+|++.
T Consensus 748 C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 748 CDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCSCC--------------
T ss_pred CCCCccCCCCCCCCccccC
Confidence 8889999999999999864
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=296.99 Aligned_cols=446 Identities=16% Similarity=0.131 Sum_probs=299.2
Q ss_pred CCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
++|++|+++++....++. .+++|+.|++.++... .+++..+..+++|++|++++ +.++.+ ++..+..+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~-n~l~~~---~p~~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTG-NPIQSF---SPGSFSGL 103 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTT-CCCCCC---CTTSSTTC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCC-Cccccc---ChhhcCCc
Confidence 578888888887666544 3667888888877543 34444456688888888888 456655 55667788
Q ss_pred CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-ccccccCCCCCCceEEEccCCCCcccCC--C
Q 008856 88 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-KLPQSSFSLSSLREIEIFKCSSLVSFPE--V 164 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~ 164 (551)
++|++|++++| .+..+++. .++.+ ++|++|++++|.... .+|..+.++++|++|+++++ .++.+++ +
T Consensus 104 ~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 173 (606)
T 3vq2_A 104 TSLENLVAVET-KLASLESF----PIGQL----ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDL 173 (606)
T ss_dssp TTCCEEECTTS-CCCCSSSS----CCTTC----TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTT
T ss_pred ccCCEEEccCC-cccccccc----ccCCC----CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhh
Confidence 88888888886 47666643 25555 888888888864332 46777888888888888874 4555443 2
Q ss_pred CCCCC----CcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcc--------------------------------
Q 008856 165 ALPSK----LKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLT-------------------------------- 208 (551)
Q Consensus 165 ~~~~~----L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------------------- 208 (551)
+.+++ +.++++++|. +..++...+. ..+|+.|+++++....
T Consensus 174 ~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNP-IDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp HHHHHCTTCCCEEECTTCC-CCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhccccccceeeccCCC-cceeCccccc--CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 22333 3467777754 4444433221 1467777777653210
Q ss_pred --------------------------eeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCC
Q 008856 209 --------------------------YIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCP 262 (551)
Q Consensus 209 --------------------------~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 262 (551)
.++....+++|+.++++++ .++.+ | .+.. +++|++|++++|.
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~l--~-~l~~--------~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYL--E-DVPK--------HFKWQSLSIIRCQ 318 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC-CCCCC--C-CCCT--------TCCCSEEEEESCC
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc-cchhh--h-hccc--------cccCCEEEccccc
Confidence 0000122356666666653 33444 3 3333 5567777777754
Q ss_pred CCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc---cccccCCCCcce
Q 008856 263 SLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL---PSGLHKLHQLRE 339 (551)
Q Consensus 263 ~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~ 339 (551)
. .. +|...++ +|++|++++|...... .+..+++|+.|++++ +.+... +..+..+++|++
T Consensus 319 l-~~-lp~~~l~-------------~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 319 L-KQ-FPTLDLP-------------FLKSLTLTMNKGSISF--KKVALPSLSYLDLSR-NALSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp C-SS-CCCCCCS-------------SCCEEEEESCSSCEEC--CCCCCTTCCEEECCS-SCEEEEEECCHHHHCCSCCCE
T ss_pred C-cc-cccCCCC-------------ccceeeccCCcCccch--hhccCCCCCEEECcC-CccCCCcchhhhhccCCcccE
Confidence 3 44 3322222 4888888888554433 566888999999988 445544 566778899999
Q ss_pred EEecCCCCCccCCCCCCCCCCccEEEEccCccccccc-cccccCCcccceeccc-ccccccc--CCcCCCcceeEecCCc
Q 008856 340 ISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEE--DGLPTNLHSLVIRGNM 415 (551)
Q Consensus 340 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~--~~~~~~L~~L~l~~~~ 415 (551)
|++++| .+..++.....+++|+.|++++|......+ ..+.++++|+.|++++ .+..... ...+++|++|++++|.
T Consensus 381 L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 381 LDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred eECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 999985 466677666667799999999865444344 4688899999999998 5555333 2567899999999998
Q ss_pred hhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhh-hhhccCCCCcCE
Q 008856 416 EIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL-SSSIIDLRNLTE 494 (551)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~ 494 (551)
......+.. +..+++|++|++++|. +..++... +..+++|++|++++ +.+..+ |..+..+++|++
T Consensus 460 l~~~~~~~~---~~~l~~L~~L~Ls~n~----l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 460 FKDNTLSNV---FANTTNLTFLDLSKCQ----LEQISWGV------FDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp EGGGEECSC---CTTCTTCCEEECTTSC----CCEECTTT------TTTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCE
T ss_pred CCCcchHHh---hccCCCCCEEECCCCc----CCccChhh------hcccccCCEEECCC-CcCCCcCHHHccCCCcCCE
Confidence 544333333 7788999999999983 55554432 23578999999999 577665 678888999999
Q ss_pred EEEcCCCCccccCCC--CCccccceEeecCCc
Q 008856 495 LVLRGCPKLKYFPEK--GLPSSLLELWISGCP 524 (551)
Q Consensus 495 L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 524 (551)
|++++| +++.+|.. .++.+|++|++++++
T Consensus 526 L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 526 LDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred EECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 999995 58888875 223469999998875
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=306.12 Aligned_cols=467 Identities=17% Similarity=0.072 Sum_probs=333.3
Q ss_pred hhhhccCCCCcceEEeCCCCCcccccc---ccccceeeeccccCcccceeccC-CcCCCCCCccEEEecCCCCchhhccc
Q 008856 4 IVISITSLPALCKMEIGGCKKVVWRSA---TDHLGSQNSVVCRDASNQVFLAG-PLKPRIPKLEELKINNIQNETCIWKS 79 (551)
Q Consensus 4 ~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~ 79 (551)
+..+|+.+++|+.++++++....++.. +.+|++|++.+|.... .+|. .....+++|++|+++++.-....
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--- 142 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG---PVTTLTSLGSCSGLKFLNVSSNTLDFPG--- 142 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEE---EGGGGGGGGGCTTCCEEECCSSEEECCS---
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCC---cCCChHHHhCCCCCCEEECcCCccCCcC---
Confidence 566788888999999888766554333 6778999998886442 2332 12456899999999995332222
Q ss_pred CcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCc
Q 008856 80 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLV 159 (551)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 159 (551)
+...+..+++|++|++++|. ++...+..+ ..+..+ ++|++|++++|......+ ...+++|++|++++|....
T Consensus 143 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~~~l----~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~ 214 (768)
T 3rgz_A 143 KVSGGLKLNSLEVLDLSANS-ISGANVVGW-VLSDGC----GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST 214 (768)
T ss_dssp SCCSCCCCTTCSEEECCSSC-CEEETHHHH-HHTTCC----TTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCS
T ss_pred CHHHhccCCCCCEEECCCCc-cCCcCChhh-hhhccC----CCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCC
Confidence 44444688999999999964 666544311 113444 899999999975433333 4789999999999975544
Q ss_pred ccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccc
Q 008856 160 SFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGI 239 (551)
Q Consensus 160 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 239 (551)
.++.++.+++|++|++++|.-...++..+ ..+++|++|++++|.....++.. .+++|++|+++++.-...+ |..+
T Consensus 215 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~i--p~~~ 289 (768)
T 3rgz_A 215 GIPFLGDCSALQHLDISGNKLSGDFSRAI--STCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEI--PDFL 289 (768)
T ss_dssp CCCBCTTCCSCCEEECCSSCCCSCHHHHT--TTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESC--CCCS
T ss_pred CCcccccCCCCCEEECcCCcCCCcccHHH--hcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCcc--CHHH
Confidence 56667889999999999977443444442 33489999999997644444433 6789999999986433344 6655
Q ss_pred cccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhh-hcCCCCCcEEEE
Q 008856 240 QCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAER-LDNNTSLETISI 318 (551)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l 318 (551)
.. .+++|++|+++++. ++. ..|..+.++. +|++|++++|.....++.. +..+++|++|++
T Consensus 290 ~~-------~~~~L~~L~Ls~n~-l~~-----~~p~~~~~l~------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 290 SG-------ACDTLTGLDLSGNH-FYG-----AVPPFFGSCS------LLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CT-------TCTTCSEEECCSSE-EEE-----CCCGGGGGCT------TCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred Hh-------hcCcCCEEECcCCc-CCC-----ccchHHhcCC------CccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 44 13679999999853 332 1333333333 5999999999766455544 889999999999
Q ss_pred ecCCCcccccccccCCC-CcceEEecCCCCCccCCCCCCC--CCCccEEEEccCccccccccccccCCcccceeccc-cc
Q 008856 319 YNCENLKILPSGLHKLH-QLREISIGSCGNLVSFPGGGLP--CAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-AL 394 (551)
Q Consensus 319 ~~~~~l~~~~~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l 394 (551)
++|.....+|..+..++ +|++|++++|.-...++..... +++|+.|++++|.....+|..+.++++|+.|++++ .+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 99543336788888777 9999999997544445543322 56899999999765557888899999999999999 55
Q ss_pred c-ccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccc-cccccccccccccccccccccc
Q 008856 395 L-SLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMV-SFPLEDKRLGTVLRLPTTLTSL 471 (551)
Q Consensus 395 ~-~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L 471 (551)
. .+|.. +.+++|++|++++|..... .+.. +..+++|++|++++|. +. .+|... ..+++|++|
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~---~~~l~~L~~L~L~~N~----l~~~~p~~l-------~~l~~L~~L 495 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQE---LMYVKTLETLILDFND----LTGEIPSGL-------SNCTNLNWI 495 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSC-CCGG---GGGCTTCCEEECCSSC----CCSCCCGGG-------GGCTTCCEE
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCc-CCHH---HcCCCCceEEEecCCc----ccCcCCHHH-------hcCCCCCEE
Confidence 5 33432 5678999999999985432 2222 6788999999999993 44 455543 367899999
Q ss_pred ccccCCChh-hhhhhccCCCCcCEEEEcCCCCccccCCC-CCccccceEeecCCc
Q 008856 472 RIEDFPNLE-RLSSSIIDLRNLTELVLRGCPKLKYFPEK-GLPSSLLELWISGCP 524 (551)
Q Consensus 472 ~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 524 (551)
+++++ .+. .+|.++..+++|++|++++|.....+|.. ..+++|++|++++|+
T Consensus 496 ~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 496 SLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 99994 555 67888999999999999997654466653 236789999999885
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=291.60 Aligned_cols=454 Identities=15% Similarity=0.143 Sum_probs=266.2
Q ss_pred CcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccC
Q 008856 13 ALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 88 (551)
Q Consensus 13 ~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 88 (551)
++++|++++|....+.. .+++|++|++.+|.... +++..+..+++|++|++++ +.+..+ .+..+..++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~-n~l~~~---~~~~~~~l~ 105 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTA-NPLIFM---AETALSGPK 105 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTT-CCCSEE---CTTTTSSCT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCC-Cccccc---Chhhhcccc
Confidence 46666666655444322 24455666665554321 2222234456666666665 344433 334455566
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-cccCCCCCCceEEEccCCCCcccCC--CC
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP-QSSFSLSSLREIEIFKCSSLVSFPE--VA 165 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~--~~ 165 (551)
+|++|+++++ .++.+++. .+..+ ++|++|++++|. +..++ ..+..+++|++|+++++ .++.+++ ++
T Consensus 106 ~L~~L~L~~n-~i~~l~~~----~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 174 (606)
T 3t6q_A 106 ALKHLFFIQT-GISSIDFI----PLHNQ----KTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMS 174 (606)
T ss_dssp TCCEEECTTS-CCSCGGGS----CCTTC----TTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHH
T ss_pred cccEeecccc-CcccCCcc----hhccC----CcccEEECCCCc-ccccCcccccCCcccCEEEcccC-cccccChhhhh
Confidence 6666666654 35444332 13333 556666665542 23221 12233555666666553 3333322 33
Q ss_pred CCCCCc--EEEccCCCCccccchhhhh-------------------------------------------------ccCC
Q 008856 166 LPSKLK--KIQIGECDALKSLPEAWMC-------------------------------------------------DTNS 194 (551)
Q Consensus 166 ~~~~L~--~L~l~~~~~l~~~~~~~~~-------------------------------------------------~~~~ 194 (551)
.+++|+ .|++++|......+..+.. ....
T Consensus 175 ~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 445555 4555544321111111000 0001
Q ss_pred CccEEEEecCCCcceeccc--cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCC
Q 008856 195 SLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNE 272 (551)
Q Consensus 195 ~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 272 (551)
+++.|+++++ .++.++.. ..+++|+.|+++++ .++.+ |.++.. +++|++|+++++ .++. .+.
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~l--p~~l~~--------l~~L~~L~l~~n-~l~~-~~~-- 318 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT-HLSEL--PSGLVG--------LSTLKKLVLSAN-KFEN-LCQ-- 318 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTS-CCSCC--CSSCCS--------CTTCCEEECTTC-CCSB-GGG--
T ss_pred ceeEEEeecC-ccCccCHHHhccccCCCEEeccCC-ccCCC--Chhhcc--------cccCCEEECccC-CcCc-Cch--
Confidence 4666666653 33444432 33577888888774 56655 666665 667888888774 3433 211
Q ss_pred chhhhhhccccCCCCCccEEEeccCcchhhh-HhhhcCCCCCcEEEEecCCCcccc---cccccCCCCcceEEecCCCCC
Q 008856 273 LPATLESLEVGNLPPSLKSLRVRYCSKLESI-AERLDNNTSLETISIYNCENLKIL---PSGLHKLHQLREISIGSCGNL 348 (551)
Q Consensus 273 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~l 348 (551)
..+..+ ++|++|++++|.....+ ...+..+++|+.|++++ +.+..+ +..+..+++|++|++++|...
T Consensus 319 --~~~~~l------~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 319 --ISASNF------PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp --GCGGGC------TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred --hhhhcc------CcCCEEECCCCCcccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCC
Confidence 111111 15888888888655333 33477888888888888 445544 456778889999999886443
Q ss_pred ccCCCCCCCCCCccEEEEccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhh
Q 008856 349 VSFPGGGLPCAKLTALEIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEW 424 (551)
Q Consensus 349 ~~l~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~ 424 (551)
...+.....+++|+.|++++|......+ ..+.++++|+.|++++ .+...+.. ..+++|++|++++|+......+.
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~- 468 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK- 468 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS-
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc-
Confidence 3334455556789999998865333333 3478889999999988 66554432 45789999999999854322111
Q ss_pred ccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhh-hhhccCCCCcCEEEEcCCCCc
Q 008856 425 GRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL-SSSIIDLRNLTELVLRGCPKL 503 (551)
Q Consensus 425 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l 503 (551)
...+..+++|++|++++|. +..++... +..+++|++|++++ +.+..+ |..+.++++| +|++++| ++
T Consensus 469 ~~~~~~l~~L~~L~Ls~n~----l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~l 535 (606)
T 3t6q_A 469 TNSLQTLGRLEILVLSFCD----LSSIDQHA------FTSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-HI 535 (606)
T ss_dssp SCGGGGCTTCCEEECTTSC----CCEECTTT------TTTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-CC
T ss_pred chhhccCCCccEEECCCCc----cCccChhh------hccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-cc
Confidence 1126788999999999983 55554322 23578999999999 566654 5788889999 9999995 56
Q ss_pred cccCCCCC--ccccceEeecCCc
Q 008856 504 KYFPEKGL--PSSLLELWISGCP 524 (551)
Q Consensus 504 ~~l~~~~~--~~~L~~L~i~~c~ 524 (551)
+.++...+ +++|+.|++++||
T Consensus 536 ~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 536 SIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCCGGGHHHHHTSSEEECTTCC
T ss_pred cccCHhhcccCCCCCEEeCCCCC
Confidence 66655432 5789999999986
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=288.61 Aligned_cols=429 Identities=15% Similarity=0.117 Sum_probs=317.9
Q ss_pred hccCCCCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcc
Q 008856 7 SITSLPALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNE 82 (551)
Q Consensus 7 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 82 (551)
+|+.+++|++|++++|....+.. .+.+|++|++.++.... .++..+..+++|++|++++ +.++.+ +..
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~-n~l~~~---~~~ 122 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS----FSPGSFSGLTSLENLVAVE-TKLASL---ESF 122 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC----CCTTSSTTCTTCCEEECTT-SCCCCS---SSS
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc----cChhhcCCcccCCEEEccC-Cccccc---ccc
Confidence 68899999999999997766533 36779999999887543 4334456799999999999 466666 555
Q ss_pred hhcccCCccEEeecCCccccc--cchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCc----eEEEccCC
Q 008856 83 LLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLR----EIEIFKCS 156 (551)
Q Consensus 83 ~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~----~L~l~~c~ 156 (551)
.++.+++|++|++++|. +.. +|. ++..+ ++|++|++++|......+..+..+.+|+ +|+++++
T Consensus 123 ~~~~l~~L~~L~L~~n~-l~~~~lp~-----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n- 191 (606)
T 3vq2_A 123 PIGQLITLKKLNVAHNF-IHSCKLPA-----YFSNL----TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN- 191 (606)
T ss_dssp CCTTCTTCCEEECCSSC-CCCCCCCG-----GGGTC----TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC-
T ss_pred ccCCCCCCCEEeCCCCc-ccceechH-----hHhhc----CCCCEEEccCCcceecChhhhhhhhccccccceeeccCC-
Confidence 58899999999999964 654 343 36666 9999999998643333344455555444 7888874
Q ss_pred CCcccCC-CCCCCCCcEEEccCCCCc------------------------------------------------------
Q 008856 157 SLVSFPE-VALPSKLKKIQIGECDAL------------------------------------------------------ 181 (551)
Q Consensus 157 ~l~~~~~-~~~~~~L~~L~l~~~~~l------------------------------------------------------ 181 (551)
.++.+++ .....+|++|++++|...
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 5566554 333447888887776321
Q ss_pred ---cccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEE
Q 008856 182 ---KSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGI 258 (551)
Q Consensus 182 ---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l 258 (551)
...... ....++|+.|+++++. ++.++....+++|+.|++++|.. ..+ |. + . +++|++|++
T Consensus 272 ~~~~~~~~~--~~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~l--p~-~-~--------l~~L~~L~l 335 (606)
T 3vq2_A 272 NDFSDDIVK--FHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQF--PT-L-D--------LPFLKSLTL 335 (606)
T ss_dssp TTCCGGGGS--CGGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSC--CC-C-C--------CSSCCEEEE
T ss_pred ccccccccc--cccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccc--cc-C-C--------CCccceeec
Confidence 000011 1223789999999854 56666556678999999999754 666 53 3 4 778999999
Q ss_pred ecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhh--hHhhhcCCCCCcEEEEecCCCcccccccccCCCC
Q 008856 259 RYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLES--IAERLDNNTSLETISIYNCENLKILPSGLHKLHQ 336 (551)
Q Consensus 259 ~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 336 (551)
+++..+.. ++...++. |++|++++|..... .+..+..+++|++|++++ +.+..+|..+..+++
T Consensus 336 ~~n~~~~~-~~~~~l~~-------------L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 336 TMNKGSIS-FKKVALPS-------------LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF-NGAIIMSANFMGLEE 400 (606)
T ss_dssp ESCSSCEE-CCCCCCTT-------------CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS-CSEEEECCCCTTCTT
T ss_pred cCCcCccc-hhhccCCC-------------CCEEECcCCccCCCcchhhhhccCCcccEeECCC-CccccchhhccCCCC
Confidence 99876666 55555665 99999999975433 366788999999999999 557778888889999
Q ss_pred cceEEecCCCCCccCC-CCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccc--cccC-CcCCCcceeEe
Q 008856 337 LREISIGSCGNLVSFP-GGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLS--LEED-GLPTNLHSLVI 411 (551)
Q Consensus 337 L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~--l~~~-~~~~~L~~L~l 411 (551)
|++|++++|......+ .....+++|+.|++++|......|..+.++++|+.|++++ .+.. ++.. ..+++|++|++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 9999999964443334 3455677999999999876666778899999999999999 6654 4443 56899999999
Q ss_pred cCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccc-ccccccccccccccccccccccccCCChhhhhhhccCCC
Q 008856 412 RGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSF-PLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLR 490 (551)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 490 (551)
++|.... ..+.+ +..+++|++|++++|. +..+ |... ..+++|++|++++ ++++.+|..+..++
T Consensus 481 s~n~l~~-~~~~~---~~~l~~L~~L~Ls~N~----l~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~p~~~~~l~ 544 (606)
T 3vq2_A 481 SKCQLEQ-ISWGV---FDTLHRLQLLNMSHNN----LLFLDSSHY-------NQLYSLSTLDCSF-NRIETSKGILQHFP 544 (606)
T ss_dssp TTSCCCE-ECTTT---TTTCTTCCEEECCSSC----CSCEEGGGT-------TTCTTCCEEECTT-SCCCCEESCGGGSC
T ss_pred CCCcCCc-cChhh---hcccccCCEEECCCCc----CCCcCHHHc-------cCCCcCCEEECCC-CcCcccCHhHhhhc
Confidence 9997443 33333 7789999999999993 5555 3333 4578999999999 68999998788887
Q ss_pred -CcCEEEEcCCC
Q 008856 491 -NLTELVLRGCP 501 (551)
Q Consensus 491 -~L~~L~l~~c~ 501 (551)
+|++|++++|+
T Consensus 545 ~~L~~l~l~~N~ 556 (606)
T 3vq2_A 545 KSLAFFNLTNNS 556 (606)
T ss_dssp TTCCEEECCSCC
T ss_pred ccCcEEEccCCC
Confidence 59999999966
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=287.51 Aligned_cols=223 Identities=17% Similarity=0.105 Sum_probs=146.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~ 365 (551)
+|+.|++++|......+..+..+++|+.|+++++.....++ ..+..+++|++|++++|. +..+ +.....+++|+.|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccch
Confidence 45566666655444445566667777777777733222343 455667777777777754 3333 23344456788888
Q ss_pred EccCcc--ccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhh-----ccccccCCCcc
Q 008856 366 IYDCKR--LKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEW-----GRGFHRFSSLR 435 (551)
Q Consensus 366 l~~c~~--l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~l~~L~ 435 (551)
++++.. +..+|..+.++++|+.|++++ .+..++.. ..+++|++|++++|.... ..... ...+..+++|+
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR-LWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG-GGSTTSTTSCCCTTTTCTTCC
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc-cchhhccCCcchhhcCCCCCC
Confidence 877532 245677788888888888888 77776654 456888888888887432 21110 00156778888
Q ss_pred EEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhh-ccCCCCcCEEEEcCCCCccccCCCC---C
Q 008856 436 HLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSS-IIDLRNLTELVLRGCPKLKYFPEKG---L 511 (551)
Q Consensus 436 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~---~ 511 (551)
+|++++|. +..+|... +..+++|+.|++++ ++++.+|.. +..+++|++|++++ ++++.++... .
T Consensus 540 ~L~L~~N~----l~~i~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~ 607 (680)
T 1ziw_A 540 ILNLESNG----FDEIPVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPA 607 (680)
T ss_dssp EEECCSSC----CCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHH
T ss_pred EEECCCCC----CCCCCHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhccc
Confidence 88888883 66777643 34567888889888 788888743 56788899999988 4677766532 3
Q ss_pred ccccceEeecCCc
Q 008856 512 PSSLLELWISGCP 524 (551)
Q Consensus 512 ~~~L~~L~i~~c~ 524 (551)
+++|+.+++++||
T Consensus 608 ~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 608 FRNLTELDMRFNP 620 (680)
T ss_dssp HTTCSEEECTTCC
T ss_pred ccccCEEEccCCC
Confidence 4788889888875
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-31 Score=281.62 Aligned_cols=192 Identities=13% Similarity=0.057 Sum_probs=137.7
Q ss_pred ceEEeCCCCCccccccc-cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSAT-DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
+.++.++.....++..+ ..++.|++.++.... +++..+..+++|++|++++ +.++.+ .+..|..+++|++|
T Consensus 15 ~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~-n~i~~~---~~~~~~~l~~L~~L 86 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTR-CQIYWI---HEDTFQSQHRLDTL 86 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTT-CCCCEE---CTTTTTTCTTCCEE
T ss_pred ceEECCCCCcccCcCCCCCcCcEEEccCCccCc----CChhHhccCccceEEECCC-Ccccee---ChhhccCccccCee
Confidence 45666665555577664 459999999987653 4445567799999999999 466666 66778999999999
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-ccccCCCCCCceEEEccCCCCccc--CCCCCCCCC
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL-PQSSFSLSSLREIEIFKCSSLVSF--PEVALPSKL 170 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~L 170 (551)
++++| .+..+++. ++..+ ++|++|++++|. +..+ +..+..+++|++|+++++ .++.+ +....+++|
T Consensus 87 ~Ls~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 155 (606)
T 3t6q_A 87 VLTAN-PLIFMAET----ALSGP----KALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKL 155 (606)
T ss_dssp ECTTC-CCSEECTT----TTSSC----TTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTC
T ss_pred eCCCC-cccccChh----hhccc----ccccEeeccccC-cccCCcchhccCCcccEEECCCC-cccccCcccccCCccc
Confidence 99996 47776553 36666 999999999964 4554 567899999999999995 56654 555558999
Q ss_pred cEEEccCCCCccccchhhhhccCCCcc--EEEEecCCCcceeccc-cCCCCccEEEEecCC
Q 008856 171 KKIQIGECDALKSLPEAWMCDTNSSLE--ILSIHGCRSLTYIAAV-QLPSSLKMLTIWYCD 228 (551)
Q Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 228 (551)
++|++++|. +..++...+ ..+++|+ .|++++|. ++.++.. ....+|+.++++++.
T Consensus 156 ~~L~L~~n~-l~~~~~~~~-~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 156 KVLDFQNNA-IHYLSKEDM-SSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp CEEECCSSC-CCEECHHHH-HTTTTCCSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCS
T ss_pred CEEEcccCc-ccccChhhh-hhhcccceeEEecCCCc-cCccChhHhhhccccccccCCch
Confidence 999999975 555433222 2347788 78888864 4444433 223567777776654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=283.11 Aligned_cols=469 Identities=16% Similarity=0.120 Sum_probs=228.8
Q ss_pred hccCCCCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcc
Q 008856 7 SITSLPALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNE 82 (551)
Q Consensus 7 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 82 (551)
+|+.+++|++|++++|....+.. .+++|+.|++.++... .++...+..+++|++|++++ +.++.+ +..
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~-n~l~~~---~~~ 115 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS----QLSDKTFAFCTNLTELHLMS-NSIQKI---KNN 115 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCS-SCCCCC---CSC
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC----ccChhhhccCCCCCEEECCC-CccCcc---Chh
Confidence 46667777777777765544322 2556666666665433 23433344456666666665 244444 444
Q ss_pred hhcccCCccEEeecCCccccccchhhhhhhhhhh----------------------hccCCCccEEecccCccccccccc
Q 008856 83 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQL----------------------CQLSCRLEYLILSYCEGLVKLPQS 140 (551)
Q Consensus 83 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l----------------------~~~~~~L~~L~L~~~~~l~~~~~~ 140 (551)
.+..+++|++|++++|. +..+++.. +..+ ....++|++|++++|..-...+..
T Consensus 116 ~~~~l~~L~~L~Ls~n~-l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNG-LSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCCCS----SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred HccccCCCCEEECCCCc-ccccCchh----hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 45555556666655542 33332211 2222 001144555555443211111111
Q ss_pred cCCC---------------------------CCCceEEEccCCCCcccCC--CCCC--CCCcEEEccCCCCccccchhhh
Q 008856 141 SFSL---------------------------SSLREIEIFKCSSLVSFPE--VALP--SKLKKIQIGECDALKSLPEAWM 189 (551)
Q Consensus 141 ~~~l---------------------------~~L~~L~l~~c~~l~~~~~--~~~~--~~L~~L~l~~~~~l~~~~~~~~ 189 (551)
+..+ ++|++|+++++ .++...+ +..+ ++|++|++++|. +..++...+
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~ 268 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSF 268 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS-CCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTT
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC-cccccChhHhhccCcCCCCEEECCCCC-cCccCcccc
Confidence 2222 23344444432 2222221 2222 347777777754 333332211
Q ss_pred hccCCCccEEEEecCCCcceeccc--cCCCCccEEEEecCCCcccc---cccc----cccccCCCcccccCCccEEEEec
Q 008856 190 CDTNSSLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDNIRTL---TVEE----GIQCSSSSRRYTSYLLEHLGIRY 260 (551)
Q Consensus 190 ~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l---~~~~----~~~~~~~~~~~~~~~L~~L~l~~ 260 (551)
..+++|+.|++++|. ++.+... ..+++|+.|+++++..-..+ .+|. .+.. +++|++|++++
T Consensus 269 -~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~--------l~~L~~L~l~~ 338 (680)
T 1ziw_A 269 -AWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW--------LKCLEHLNMED 338 (680)
T ss_dssp -TTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT--------CTTCCEEECCS
T ss_pred -cCcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc--------CCCCCEEECCC
Confidence 234778888888753 3333322 34567777777653211100 0011 2222 45677777766
Q ss_pred CCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc-hhhhH-hhhc--CCCCCcEEEEecCCCcccc-cccccCCC
Q 008856 261 CPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK-LESIA-ERLD--NNTSLETISIYNCENLKIL-PSGLHKLH 335 (551)
Q Consensus 261 c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~-~~~~~-~~~~--~l~~L~~L~l~~~~~l~~~-~~~~~~~~ 335 (551)
+ .+.. .+...+. .+ ++|++|++++|.. ...++ ..+. ..++|+.|+++++ .+..+ +..+..++
T Consensus 339 n-~l~~-~~~~~~~----~l------~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 339 N-DIPG-IKSNMFT----GL------INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLG 405 (680)
T ss_dssp C-CBCC-CCTTTTT----TC------TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTTTTCT
T ss_pred C-ccCC-CChhHhc----cc------cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhhhCCC
Confidence 3 3333 2211111 11 1367777766642 11111 1111 1246677777663 34443 55566667
Q ss_pred CcceEEecCCCCCccCCC-CCCCCCCccEEEEccCccccccccccccCCcccceeccc-ccc---ccccC-CcCCCccee
Q 008856 336 QLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALL---SLEED-GLPTNLHSL 409 (551)
Q Consensus 336 ~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~---~l~~~-~~~~~L~~L 409 (551)
+|++|++++|.....++. ....+++|+.|++++|......+..+..+++|+.|++++ .+. .+|.. ..+++|++|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 777777776533333432 233345677777776543222344566667777777766 332 22322 345667777
Q ss_pred EecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccc--ccccccccccccccccccCCChhhhhh-hc
Q 008856 410 VIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKR--LGTVLRLPTTLTSLRIEDFPNLERLSS-SI 486 (551)
Q Consensus 410 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~ 486 (551)
++++|... ...+.. +..+++|++|++++|. +..++..... ....+..+++|++|++++ +.++.+|. .+
T Consensus 486 ~Ls~N~l~-~i~~~~---~~~l~~L~~L~Ls~N~----l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~ 556 (680)
T 1ziw_A 486 DLSNNNIA-NINDDM---LEGLEKLEILDLQHNN----LARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVF 556 (680)
T ss_dssp ECCSSCCC-CCCTTT---TTTCTTCCEEECCSSC----CGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred ECCCCCCC-cCChhh---hccccccCEEeCCCCC----ccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHc
Confidence 77766622 222222 5566677777777662 4443221100 001123456677777776 56666663 35
Q ss_pred cCCCCcCEEEEcCCCCccccCCCCC--ccccceEeecCC
Q 008856 487 IDLRNLTELVLRGCPKLKYFPEKGL--PSSLLELWISGC 523 (551)
Q Consensus 487 ~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c 523 (551)
..+++|++|++++ ++++.++...+ +++|+.|++++|
T Consensus 557 ~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 557 KDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC
Confidence 6667777777766 45666665432 466777777766
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=276.27 Aligned_cols=445 Identities=15% Similarity=0.126 Sum_probs=295.3
Q ss_pred CCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
+++++|++++|....+.. .+++|+.|++.+|... .++...+..+++|++|++++ +.++.+ +...+..+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~-n~l~~~---~~~~~~~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTG-NPIQSL---ALGAFSGL 99 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTT-CCCCEE---CTTTTTTC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC----ccCcccccCchhCCEEeCcC-CcCCcc---CHhhhcCc
Confidence 468888888887655432 3677888888887533 34445556688888888888 456666 66667888
Q ss_pred CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-ccccccCCCCCCceEEEccCCCCcccCC--C
Q 008856 88 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-KLPQSSFSLSSLREIEIFKCSSLVSFPE--V 164 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~ 164 (551)
++|++|+++++ .++.+++. .+..+ ++|++|++++|.... .+|..+..+++|++|+++++ .++.+++ +
T Consensus 100 ~~L~~L~L~~n-~l~~l~~~----~~~~l----~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 169 (570)
T 2z63_A 100 SSLQKLVAVET-NLASLENF----PIGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 169 (570)
T ss_dssp TTCCEEECTTS-CCCCSTTC----SCTTC----TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGG
T ss_pred ccccccccccc-ccccCCCc----ccccc----ccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHc
Confidence 88888888885 47776653 25555 888888888864322 36777888888888888885 4555543 3
Q ss_pred CCCCCC----cEEEccCCCCccccchhhhhccCCCccEEEEecCCCc------------------------------cee
Q 008856 165 ALPSKL----KKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL------------------------------TYI 210 (551)
Q Consensus 165 ~~~~~L----~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------------~~~ 210 (551)
+.+++| +.+++++|. +..++...+ ...+|+.|+++++..- ..+
T Consensus 170 ~~l~~L~~~~~~L~l~~n~-l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNP-MNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp HHHHTCTTCCCEEECTTCC-CCEECTTTT--TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred cchhccchhhhhcccCCCC-ceecCHHHh--ccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 445556 778888765 444333221 1246888888765210 011
Q ss_pred cccc--CC--CCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCC
Q 008856 211 AAVQ--LP--SSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLP 286 (551)
Q Consensus 211 ~~~~--~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 286 (551)
+... .+ ..++.+.+.++..+... ++..+.. +++|++|+++++ .++. + |.++.. .
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~-~~~~~~~--------l~~L~~L~l~~~-~l~~-l-----~~~~~~-----~- 304 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDD-IIDLFNC--------LTNVSSFSLVSV-TIER-V-----KDFSYN-----F- 304 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESC-STTTTGG--------GTTCSEEEEESC-EECS-C-----CBCCSC-----C-
T ss_pred chhhhccccccchhhhhhhcchhhhhh-chhhhcC--------cCcccEEEecCc-cchh-h-----hhhhcc-----C-
Confidence 1000 00 12344444443222211 1334444 668999999985 3433 2 221111 1
Q ss_pred CCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccC---CCCCCCCCCccE
Q 008856 287 PSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSF---PGGGLPCAKLTA 363 (551)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~~~~L~~ 363 (551)
+|++|++++|... .++. ..+++|+.|+++++......+. ..+++|++|++++| .+... +.....+++|+.
T Consensus 305 -~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 305 -GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp -CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCE
T ss_pred -CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCC-ccCccccccccccccCccCE
Confidence 4999999998654 3333 5788999999999553333332 67899999999985 34333 223334568999
Q ss_pred EEEccCccccccccccccCCcccceeccc-ccccccc---CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEE
Q 008856 364 LEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEE---DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTI 439 (551)
Q Consensus 364 L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 439 (551)
|++++|. ++.++..+.++++|+.|++++ .+...+. ...+++|++|++++|.... ..+.. +..+++|++|++
T Consensus 378 L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~---~~~l~~L~~L~l 452 (570)
T 2z63_A 378 LDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGI---FNGLSSLEVLKM 452 (570)
T ss_dssp EECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-CCTTT---TTTCTTCCEEEC
T ss_pred EECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-cchhh---hhcCCcCcEEEC
Confidence 9999854 666666688999999999998 6655433 3567899999999997443 22332 678899999999
Q ss_pred eccCCCCccc--ccccccccccccccccccccccccccCCChhhh-hhhccCCCCcCEEEEcCCCCccccCCCC--Cccc
Q 008856 440 DGCDDDTMMV--SFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL-SSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSS 514 (551)
Q Consensus 440 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~ 514 (551)
++|. +. .+|... ..+++|++|++++ +.++.+ |..+..+++|++|++++| +++.++... .+++
T Consensus 453 ~~n~----l~~~~~p~~~-------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 453 AGNS----FQENFLPDIF-------TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTS 519 (570)
T ss_dssp TTCE----EGGGEECSCC-------TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred cCCc----Cccccchhhh-------hcccCCCEEECCC-CccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccC
Confidence 9983 43 455433 4678999999999 577776 677888999999999995 677776543 3679
Q ss_pred cceEeecCCc
Q 008856 515 LLELWISGCP 524 (551)
Q Consensus 515 L~~L~i~~c~ 524 (551)
|++|++++|+
T Consensus 520 L~~L~l~~N~ 529 (570)
T 2z63_A 520 LQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSSC
T ss_pred CcEEEecCCc
Confidence 9999999865
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=277.84 Aligned_cols=220 Identities=19% Similarity=0.156 Sum_probs=131.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|+.|++++|......+..+..+++|++|++++ +.+..+ +..+..+++|++|++++| .+..++. ....+++|+.|+
T Consensus 291 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCEEEEESCCCCEECTTTTTTCSSCCEEEEES-CCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEE
T ss_pred CCCEEECCCCcCCCCChHHhcCCCCCCEEECCC-CCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEE
Confidence 467777776655444455666667777777776 344444 555666677777777764 4444443 233345666666
Q ss_pred EccCccccccccccccCCcccceeccc-cccccccC-----------------------CcCCCcceeEecCCchhhhhh
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-----------------------GLPTNLHSLVIRGNMEIWKSM 421 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-----------------------~~~~~L~~L~l~~~~~~~~~~ 421 (551)
+++| .++.++ .+++|+.|++++ .+..++.. ..+++|++|++++|.... ..
T Consensus 369 Ls~N-~l~~i~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~ 442 (844)
T 3j0a_A 369 LRDN-ALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS-CS 442 (844)
T ss_dssp EETC-CSCCCS----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC-CC
T ss_pred CCCC-CCCccc----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc-cc
Confidence 6663 333332 244444555444 33333221 245677777777776322 11
Q ss_pred hhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCC
Q 008856 422 IEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGC 500 (551)
Q Consensus 422 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c 500 (551)
.... +..+++|+.|++++|. +...+... .....+..+++|++|++++ +.++.++ ..+..+++|++|++++
T Consensus 443 ~~~~--~~~~~~L~~L~Ls~N~----l~~~~~~~-~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~- 513 (844)
T 3j0a_A 443 GDQT--PSENPSLEQLFLGENM----LQLAWETE-LCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNS- 513 (844)
T ss_dssp SSSS--SCSCTTCCBCEEESCC----CSSSCCSC-CCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEES-
T ss_pred cccc--cccCCccccccCCCCc----cccccccc-cchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCC-
Confidence 1111 3456777777777773 33322210 1112344668999999999 6888876 4578899999999999
Q ss_pred CCccccCCCCCccccceEeecCCc
Q 008856 501 PKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 501 ~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
++++.++...+.++|+.|+++++.
T Consensus 514 N~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 514 NRLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp CCCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CCCCccChhhhhccccEEECCCCc
Confidence 578888776666778887777653
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=269.19 Aligned_cols=450 Identities=17% Similarity=0.195 Sum_probs=273.6
Q ss_pred CCcceEEeCCCCCcccc----ccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWR----SATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
++|++|++++|....+. ..+++|++|++.++... .++...+..+++|++|++++ +.++.+ +...+..+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~-n~l~~~---~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSD-NHLSSL---SSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTT-SCCCSC---CHHHHTTC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCC-CccCcc---CHHHhccC
Confidence 57788888877654432 22566777777776543 23433345677788888877 455655 55556777
Q ss_pred CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-cccCCCCCCceEEEccCCCCcc-cCC-C
Q 008856 88 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP-QSSFSLSSLREIEIFKCSSLVS-FPE-V 164 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~-~~~-~ 164 (551)
++|++|++++|. ++.++.. ..+..+ ++|++|++++|..+..++ ..+..+++|++|+++++. ++. .+. +
T Consensus 98 ~~L~~L~Ls~n~-l~~~~~~---~~~~~l----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l 168 (549)
T 2z81_A 98 SSLKYLNLMGNP-YQTLGVT---SLFPNL----TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSL 168 (549)
T ss_dssp TTCCEEECTTCC-CSSSCSS---CSCTTC----TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTT
T ss_pred CCCcEEECCCCc-ccccchh---hhhhcc----CCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhh
Confidence 778888877753 5543211 124555 777788877765455554 457777777888877753 433 332 5
Q ss_pred CCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCccee-----ccccCCCCccEEEEecCCCccccc---cc
Q 008856 165 ALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI-----AAVQLPSSLKMLTIWYCDNIRTLT---VE 236 (551)
Q Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~l~---~~ 236 (551)
..+++|++|+++++. ...++..+ ....++|++|+++++. ++.+ +.....++|+.|+++++ .+.... ++
T Consensus 169 ~~l~~L~~L~l~~n~-~~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~ 244 (549)
T 2z81_A 169 KSIRDIHHLTLHLSE-SAFLLEIF-ADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELL 244 (549)
T ss_dssp TTCSEEEEEEEECSB-STTHHHHH-HHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHH
T ss_pred hccccCceEecccCc-ccccchhh-HhhcccccEEEccCCc-cccccccccchhhhhhcccceecccc-ccchhHHHHHH
Confidence 557777777777654 33333332 1234778888888753 3322 11234567888887774 222110 01
Q ss_pred ccccccCCCcccccCCccEEEEecCCCC--cccccCCCchhhhhhccccCCCCCccEEEeccCcchhh-----hHhhhcC
Q 008856 237 EGIQCSSSSRRYTSYLLEHLGIRYCPSL--TCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLES-----IAERLDN 309 (551)
Q Consensus 237 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~ 309 (551)
..+.. +++|+.+++++|..- .. ++..... .+. ...+|+.|++.++..... +...+..
T Consensus 245 ~~~~~--------~~~L~~l~l~~~~~~~~~~-~~~~~~~-~~~------~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 245 KLLRY--------ILELSEVEFDDCTLNGLGD-FNPSESD-VVS------ELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp GGGGG--------CTTCCEEEEESCEEECCSC-CCCCTTT-CCC------CCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred HHhhh--------hcccccccccccccccccc-ccccchh-hhh------hhcccccccccccccchhhhcccchhhhhh
Confidence 11222 456888888886421 11 1100000 000 012477777776643221 1112234
Q ss_pred CCCCcEEEEecCCCcccccccc-cCCCCcceEEecCCCCCccCC---CCCCCCCCccEEEEccCccccccc---cccccC
Q 008856 310 NTSLETISIYNCENLKILPSGL-HKLHQLREISIGSCGNLVSFP---GGGLPCAKLTALEIYDCKRLKALP---KGLHNL 382 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~l 382 (551)
.++|+.|++++ +.+..+|..+ ..+++|++|++++|.....++ .....+++|+.|++++| .++.++ ..+..+
T Consensus 309 ~~~L~~L~l~~-n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 309 LEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTL 386 (549)
T ss_dssp STTCCEEEEES-SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGC
T ss_pred cccceEEEecc-CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcC
Confidence 56788888888 5577777665 368888888888864433332 22334568888888885 455554 346778
Q ss_pred Ccccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccc
Q 008856 383 STLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGT 460 (551)
Q Consensus 383 ~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 460 (551)
++|+.|++++ .+..+|.. ..+++|++|++++|... .... .-.++|++|++++|. +..++.
T Consensus 387 ~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~------~~~~~L~~L~Ls~N~----l~~~~~------- 448 (549)
T 2z81_A 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKT------CIPQTLEVLDVSNNN----LDSFSL------- 448 (549)
T ss_dssp TTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCT------TSCTTCSEEECCSSC----CSCCCC-------
T ss_pred CCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccc------hhcCCceEEECCCCC----hhhhcc-------
Confidence 8888888888 77777764 45678888888888732 1111 112588888888883 555543
Q ss_pred cccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC--CccccceEeecCCc
Q 008856 461 VLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSSLLELWISGCP 524 (551)
Q Consensus 461 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 524 (551)
.+++|++|++++ ++++.+|. ...+++|++|++++| +++.++... .+++|+.|++++|+
T Consensus 449 ---~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 449 ---FLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp ---CCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ---cCChhcEEECCC-CccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 457888888888 67888875 356788888888884 576666542 35788888887765
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=281.68 Aligned_cols=455 Identities=17% Similarity=0.115 Sum_probs=248.3
Q ss_pred CCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
++|++|++++|....+.. .+.+|+.|++.+|.... .++...+..+++|++|++++ +.+..+ .+..+..+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~---~i~~~~f~~L~~L~~L~Ls~-N~l~~~---~p~~~~~l 96 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL---TIDKEAFRNLPNLRILDLGS-SKIYFL---HPDAFQGL 96 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC---EECTTTTSSCTTCCEEECTT-CCCCEE---CTTSSCSC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc---ccCHHHhcCCCCCCEEECCC-CcCccc---CHhHccCC
Confidence 567777777776554322 25667777777764322 34444456677777777777 455554 55556777
Q ss_pred CCccEEeecCCccccc-cchhhhhhhhhhhhccCCCccEEecccCcccccc-ccccCCCCCCceEEEccCCCCcccCC--
Q 008856 88 CSLKRLTITSCPKLQS-LVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL-PQSSFSLSSLREIEIFKCSSLVSFPE-- 163 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~-l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~-- 163 (551)
++|++|++++|. +.. ++.. .++..+ ++|++|++++|...... +..+.++++|++|+++++ .++.+.+
T Consensus 97 ~~L~~L~Ls~n~-l~~~~~~~---~~~~~L----~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~ 167 (844)
T 3j0a_A 97 FHLFELRLYFCG-LSDAVLKD---GYFRNL----KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHE 167 (844)
T ss_dssp SSCCCEECTTCC-CSSCCSTT---CCCSSC----SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGG
T ss_pred cccCEeeCcCCC-CCcccccC---cccccc----CCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHH
Confidence 777777777753 543 2322 224555 77777777775432222 245677777777777764 3333221
Q ss_pred CCCC--CCCcEEEccCCCCccccchhhhh----ccCCCccEEEEecCCCcce----------------------------
Q 008856 164 VALP--SKLKKIQIGECDALKSLPEAWMC----DTNSSLEILSIHGCRSLTY---------------------------- 209 (551)
Q Consensus 164 ~~~~--~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~~~~~~~---------------------------- 209 (551)
+..+ ++|+.|++++|......+..+.. .....|+.|++++|..-..
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 1112 44555555444322211111000 0001244444444310000
Q ss_pred -------eccc----cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhh
Q 008856 210 -------IAAV----QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLE 278 (551)
Q Consensus 210 -------~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 278 (551)
.... ...++++.|+++++ .+..+ .+..+.. +++|+.|++++ +.++. .+...+ .
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~-~~~~~~~--------l~~L~~L~L~~-n~i~~-~~~~~~----~ 311 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSL-NSRVFET--------LKDLKVLNLAY-NKINK-IADEAF----Y 311 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEE-CSCCSSS--------CCCCCEEEEES-CCCCE-ECTTTT----T
T ss_pred cccccCCCChhhhhccccCCccEEECCCC-ccccc-Chhhhhc--------CCCCCEEECCC-CcCCC-CChHHh----c
Confidence 0000 00245555555553 22222 0222333 44566666665 33333 111111 1
Q ss_pred hccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCC
Q 008856 279 SLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLP 357 (551)
Q Consensus 279 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 357 (551)
.+ ++|++|++++|......+..+..+++|+.|++++ +.+..+ +..+..+++|++|++++| .++.++.
T Consensus 312 ~l------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---- 379 (844)
T 3j0a_A 312 GL------DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF---- 379 (844)
T ss_dssp TC------SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS----
T ss_pred CC------CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCCC-CCCcccC----
Confidence 11 1366666666654333344555666666666666 344444 233455566666666653 3333322
Q ss_pred CCCccEEEEccC-------------------cccccccc--ccccCCcccceeccc-cccccccC---CcCCCcceeEec
Q 008856 358 CAKLTALEIYDC-------------------KRLKALPK--GLHNLSTLQDLTIGG-ALLSLEED---GLPTNLHSLVIR 412 (551)
Q Consensus 358 ~~~L~~L~l~~c-------------------~~l~~~~~--~~~~l~~L~~L~l~~-~l~~l~~~---~~~~~L~~L~l~ 412 (551)
+++|+.|+++++ +.++.++. .+.++++|+.|++++ .+..++.. ..+++|++|+++
T Consensus 380 ~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 224444444442 22333221 244788999999998 66654432 346899999999
Q ss_pred CCchhhhhh-hhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCC
Q 008856 413 GNMEIWKSM-IEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRN 491 (551)
Q Consensus 413 ~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 491 (551)
+|....... ......+..+++|+.|++++|. +..++... +..+++|++|++++ |+++.+|..... ++
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~ 527 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNY----LNSLPPGV------FSHLTALRGLSLNS-NRLTVLSHNDLP-AN 527 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH----HTTCCTTS------SSSCCSCSEEEEES-CCCSSCCCCCCC-SC
T ss_pred CCccccccccccchhhhcCcccccEEECCCCc----ccccChhH------ccchhhhheeECCC-CCCCccChhhhh-cc
Confidence 998431110 0000126788999999999994 77777643 34678999999999 789888744333 89
Q ss_pred cCEEEEcCCCCccccCCCCCccccceEeecCCc
Q 008856 492 LTELVLRGCPKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 492 L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
|+.|++++ ++++.++... ..+|+.++++++|
T Consensus 528 L~~L~Ls~-N~l~~~~~~~-~~~L~~l~l~~Np 558 (844)
T 3j0a_A 528 LEILDISR-NQLLAPNPDV-FVSLSVLDITHNK 558 (844)
T ss_dssp CCEEEEEE-ECCCCCCSCC-CSSCCEEEEEEEC
T ss_pred ccEEECCC-CcCCCCChhH-hCCcCEEEecCCC
Confidence 99999999 5677665544 4589999998754
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=268.92 Aligned_cols=446 Identities=14% Similarity=0.106 Sum_probs=298.1
Q ss_pred ceEEeCCCCCcccccc-ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSA-TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
++|+++++....++.. .++|+.|++.++.... ++...+..+++|++|++++ +.++.+ .+..+..+++|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~-n~l~~~---~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISE----LWTSDILSLSKLRILIISH-NRIQYL---DISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCS-SCCCEE---EGGGGTTCTTCCEE
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccc----cChhhccccccccEEecCC-CccCCc---ChHHhhcccCCCEE
Confidence 5788888877667665 4678888888887543 2222234588899999998 466665 55667888899999
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-ccccccCCCCCCceEEEccCCCCcccCCCCCCCCC--
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-KLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKL-- 170 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L-- 170 (551)
+++++ .++.++.. .+ ++|++|++++|.... .+|..+..+++|++|+++++ .++. ..+..+++|
T Consensus 75 ~Ls~N-~l~~lp~~-------~l----~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~~~~l~~L~L 140 (520)
T 2z7x_B 75 DLSHN-KLVKISCH-------PT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK-SSVLPIAHLNI 140 (520)
T ss_dssp ECCSS-CCCEEECC-------CC----CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG-GGGGGGTTSCE
T ss_pred ecCCC-ceeecCcc-------cc----CCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch-hhcccccccee
Confidence 99985 57777653 33 889999998864433 35678888889999999885 4444 234556777
Q ss_pred cEEEccCCCC--ccccchhhhhccCCCccEEEEecCCCcceeccc--cCCCCccEEEEecCCC------ccccccccccc
Q 008856 171 KKIQIGECDA--LKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDN------IRTLTVEEGIQ 240 (551)
Q Consensus 171 ~~L~l~~~~~--l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~------l~~l~~~~~~~ 240 (551)
++|++++|.. ....+..+.... .....+++.++.....++.. ..+++|+.++++++.. +... ...+.
T Consensus 141 ~~L~l~~n~l~~~~~~~~~l~~l~-~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~~~l~ 217 (520)
T 2z7x_B 141 SKVLLVLGETYGEKEDPEGLQDFN-TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI--LAKLQ 217 (520)
T ss_dssp EEEEEEECTTTTSSCCTTTTTTCC-EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH--HHGGG
T ss_pred eEEEeecccccccccccccccccc-cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc--hhhhc
Confidence 8888888764 233333211110 12234455554433333322 3357888888887531 1111 11333
Q ss_pred ccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhh-----cCCCCCcE
Q 008856 241 CSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERL-----DNNTSLET 315 (551)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~ 315 (551)
. +++|+.|+++++. +.. .....++.... .++|++|++++|.....++..+ ..+++|+.
T Consensus 218 ~--------l~~L~~L~l~~~~-l~~-~~~~~~~~~~~-------~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 218 T--------NPKLSNLTLNNIE-TTW-NSFIRILQLVW-------HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp G--------CTTCCEEEEEEEE-EEH-HHHHHHHHHHH-------TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred c--------ccchhhccccccc-cCH-HHHHHHHHHhh-------hCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 3 5678888887743 211 00000111000 1258999999886655666666 78888999
Q ss_pred EEEecCCCccccc-ccccCC---CCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceecc
Q 008856 316 ISIYNCENLKILP-SGLHKL---HQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIG 391 (551)
Q Consensus 316 L~l~~~~~l~~~~-~~~~~~---~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~ 391 (551)
++++++ .+ .+| ..+..+ ++|++|++++|. +...+. ...+++|+.|++++|.....+|..+.++++|+.|+++
T Consensus 281 l~l~~n-~~-~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 281 HQVVSD-VF-GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEEC-CC-CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred cccccc-ce-ecchhhhhcccccCceeEEEcCCCc-cccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 999884 44 555 334333 679999999964 333331 1345699999999965444478888999999999999
Q ss_pred c-ccccccc----CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcc-ccccccccccccccccc
Q 008856 392 G-ALLSLEE----DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMM-VSFPLEDKRLGTVLRLP 465 (551)
Q Consensus 392 ~-~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 465 (551)
+ .+..++. ...+++|++|++++|.......... +..+++|++|++++|. + ..++.. .+
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~---~~~l~~L~~L~Ls~N~----l~~~~~~~---------l~ 420 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD---CSWTKSLLSLNMSSNI----LTDTIFRC---------LP 420 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS---CCCCTTCCEEECCSSC----CCGGGGGS---------CC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccch---hccCccCCEEECcCCC----CCcchhhh---------hc
Confidence 8 6665432 3567999999999998543233222 6678999999999993 4 333332 34
Q ss_pred ccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC--CccccceEeecCCc
Q 008856 466 TTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSSLLELWISGCP 524 (551)
Q Consensus 466 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 524 (551)
++|++|++++ ++++.+|..+..+++|++|++++| +++.+|... .+++|++|++++++
T Consensus 421 ~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 421 PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 7999999999 689999987789999999999995 688888752 36799999999976
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=264.80 Aligned_cols=440 Identities=14% Similarity=0.127 Sum_probs=312.1
Q ss_pred hhccCCCCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCc
Q 008856 6 ISITSLPALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHN 81 (551)
Q Consensus 6 ~~~~~~~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 81 (551)
.+|+.+++|++|++++|....++. .+++|++|++.++.... .+...+..+++|++|+++++ .++.+ ...
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n-~l~~~--~~~ 116 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS----LSSSWFGPLSSLKYLNLMGN-PYQTL--GVT 116 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS----CCHHHHTTCTTCCEEECTTC-CCSSS--CSS
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc----cCHHHhccCCCCcEEECCCC-ccccc--chh
Confidence 468999999999999997766543 36789999999987554 33333456899999999994 55543 122
Q ss_pred chhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCccc
Q 008856 82 ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSF 161 (551)
Q Consensus 82 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~ 161 (551)
..+..+++|++|++++|..+..+++. .+..+ ++|++|++++|..-...|..+..+++|++|+++++ ....+
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~ 187 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRI----DFAGL----TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFL 187 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTT----TTTTC----CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTH
T ss_pred hhhhccCCccEEECCCCccccccCHh----hhhcc----cccCeeeccCCcccccChhhhhccccCceEecccC-ccccc
Confidence 45788999999999998657777653 36666 99999999997655567888999999999999985 44444
Q ss_pred CC--CCCCCCCcEEEccCCCCccccc--hhhhhccCCCccEEEEecCCCcceecc------ccCCCCccEEEEecCCCcc
Q 008856 162 PE--VALPSKLKKIQIGECDALKSLP--EAWMCDTNSSLEILSIHGCRSLTYIAA------VQLPSSLKMLTIWYCDNIR 231 (551)
Q Consensus 162 ~~--~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~L~~L~l~~~~~l~ 231 (551)
+. ...+++|++|++++|. +...+ ........++|+.|+++++. +++... ...+++++.+++++|. +.
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~ 264 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCT-LN 264 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCE-EE
T ss_pred chhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccc-cchhHHHHHHHHhhhhcccccccccccc-cc
Confidence 44 2458999999999975 33321 11111234789999999863 222111 1345789999999874 22
Q ss_pred cc-cccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhh-cC
Q 008856 232 TL-TVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERL-DN 309 (551)
Q Consensus 232 ~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~ 309 (551)
.+ .++..... ....+.+++.|.+.++. +........++... ....+|++|++++|.. ..++..+ ..
T Consensus 265 ~~~~~~~~~~~----~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~------~~~~~L~~L~l~~n~l-~~ip~~~~~~ 332 (549)
T 2z81_A 265 GLGDFNPSESD----VVSELGKVETVTIRRLH-IPQFYLFYDLSTVY------SLLEKVKRITVENSKV-FLVPCSFSQH 332 (549)
T ss_dssp CCSCCCCCTTT----CCCCCTTCCEEEEESCB-CSCGGGSCCCCHHH------HHSTTCCEEEEESSCC-CCCCHHHHHH
T ss_pred ccccccccchh----hhhhhcccccccccccc-cchhhhcccchhhh------hhcccceEEEeccCcc-ccCCHHHHhc
Confidence 21 00100000 01124579999998853 22201111121100 1123699999999864 4555544 57
Q ss_pred CCCCcEEEEecCCCccc-cc---ccccCCCCcceEEecCCCCCccCCC---CCCCCCCccEEEEccCccccccccccccC
Q 008856 310 NTSLETISIYNCENLKI-LP---SGLHKLHQLREISIGSCGNLVSFPG---GGLPCAKLTALEIYDCKRLKALPKGLHNL 382 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~~-~~---~~~~~~~~L~~L~l~~~~~l~~l~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~l 382 (551)
+++|+.|+++++. +.. +| ..+..+++|++|++++| .++.++. ....+++|++|++++| +++.+|..+..+
T Consensus 333 l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~ 409 (549)
T 2z81_A 333 LKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWP 409 (549)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCC
T ss_pred CccccEEEccCCc-cccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhccc
Confidence 9999999999954 543 33 34678899999999995 5555432 2344569999999995 677899989999
Q ss_pred Ccccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccc
Q 008856 383 STLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTV 461 (551)
Q Consensus 383 ~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
++|+.|++++ .+..++.. .+++|++|++++|.... . ...+++|++|++++|. +..+|...
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~Ls~N~l~~-~-------~~~l~~L~~L~Ls~N~----l~~ip~~~------ 470 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTC-IPQTLEVLDVSNNNLDS-F-------SLFLPRLQELYISRNK----LKTLPDAS------ 470 (549)
T ss_dssp TTCCEEECTTSCCSCCCTT-SCTTCSEEECCSSCCSC-C-------CCCCTTCCEEECCSSC----CSSCCCGG------
T ss_pred ccccEEECCCCCcccccch-hcCCceEEECCCCChhh-h-------cccCChhcEEECCCCc----cCcCCCcc------
Confidence 9999999999 77777654 34799999999997322 1 3578999999999994 77888754
Q ss_pred ccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 462 LRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 462 ~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
.+++|++|++++ +.++.++ ..+..+++|++|++++|+
T Consensus 471 --~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 471 --LFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp --GCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred --cCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCC
Confidence 678999999999 7888876 558899999999999977
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-29 Score=263.81 Aligned_cols=473 Identities=16% Similarity=0.143 Sum_probs=319.2
Q ss_pred ceEEeCCCCCccccccc-cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSAT-DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
+.++-++.....++..+ ++++.|++.++.... ++...+..+++|++|+++++ .++.+ +...+..+++|++|
T Consensus 10 ~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n-~i~~i---~~~~~~~l~~L~~L 81 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRC-EIQTI---EDGAYQSLSHLSTL 81 (570)
T ss_dssp TEEECCSSCCSSCCSSSCSSCCEEECCSCCCCE----ECTTTTTTCSSCCEEECTTC-CCCEE---CTTTTTTCTTCCEE
T ss_pred cEEEeCCCCccccCCCccccccEEEccCCccCc----cChhHhhCCCCceEEECCCC-cCCcc---CcccccCchhCCEE
Confidence 34444444444466654 469999999887543 44445567999999999995 67776 77778899999999
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc-ccCCCCCCceEEEccCCCCcc--cCC-CCCCCC
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ-SSFSLSSLREIEIFKCSSLVS--FPE-VALPSK 169 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~--~~~-~~~~~~ 169 (551)
+++++ .++.+++. ++..+ ++|++|++++| .+..++. .+..+++|++|+++++ .++. +|. ++.+++
T Consensus 82 ~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~ 150 (570)
T 2z63_A 82 ILTGN-PIQSLALG----AFSGL----SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTN 150 (570)
T ss_dssp ECTTC-CCCEECTT----TTTTC----TTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTT
T ss_pred eCcCC-cCCccCHh----hhcCc----ccccccccccc-ccccCCCccccccccccEEecCCC-ccceecChhhhcccCC
Confidence 99996 48877763 36666 99999999996 5566654 5889999999999985 4554 444 677999
Q ss_pred CcEEEccCCCCccccchhhhhccCCCc----cEEEEecCCCcceeccccC-CCCccEEEEecCCCc-ccccccccccc--
Q 008856 170 LKKIQIGECDALKSLPEAWMCDTNSSL----EILSIHGCRSLTYIAAVQL-PSSLKMLTIWYCDNI-RTLTVEEGIQC-- 241 (551)
Q Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~l-~~l~~~~~~~~-- 241 (551)
|++|++++|. +..++...+ ..+.+| +.|+++++. ++.++...+ ..+|+.++++++..- ..+ +..+..
T Consensus 151 L~~L~l~~n~-l~~~~~~~~-~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~l~ 225 (570)
T 2z63_A 151 LEHLDLSSNK-IQSIYCTDL-RVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVM--KTCIQGLA 225 (570)
T ss_dssp CCEEECTTSC-CCEECGGGG-HHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCTTHH--HHHHHTTT
T ss_pred CCEEeCcCCc-cceecHHHc-cchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccccccch--hhhhcCcc
Confidence 9999999975 444432211 112445 789998854 555544322 247889988874210 000 000000
Q ss_pred --------------------c--CCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc
Q 008856 242 --------------------S--SSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK 299 (551)
Q Consensus 242 --------------------~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 299 (551)
. ..+.....-.++.+++.++..+.. . .+..+..+. +|++|++++|..
T Consensus 226 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~-~----~~~~~~~l~------~L~~L~l~~~~l 294 (570)
T 2z63_A 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD-D----IIDLFNCLT------NVSSFSLVSVTI 294 (570)
T ss_dssp TCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEES-C----STTTTGGGT------TCSEEEEESCEE
T ss_pred ccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhh-h----chhhhcCcC------cccEEEecCccc
Confidence 0 000111111356667766533332 1 122222222 599999999854
Q ss_pred hhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccc---c
Q 008856 300 LESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKAL---P 376 (551)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~---~ 376 (551)
..++..+..+ +|++|++++ +.+..+|. ..+++|++|++++|.....++. ..+++|+.|++++|. ++.. +
T Consensus 295 -~~l~~~~~~~-~L~~L~l~~-n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~ 366 (570)
T 2z63_A 295 -ERVKDFSYNF-GWQHLELVN-CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSFKGCCS 366 (570)
T ss_dssp -CSCCBCCSCC-CCSEEEEES-CBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBEEEEEE
T ss_pred -hhhhhhhccC-CccEEeecc-CcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCcccccc
Confidence 4567777777 999999999 45667765 4789999999999765544444 455699999999964 4433 5
Q ss_pred cccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccc
Q 008856 377 KGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLE 454 (551)
Q Consensus 377 ~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 454 (551)
..+.++++|+.|++++ .+..++.. ..+++|++|++++|.......... +..+++|++|++++|. +......
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~----l~~~~~~ 439 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTH----TRVAFNG 439 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT---TTTCTTCCEEECTTSC----CEECCTT
T ss_pred ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh---hhcCCCCCEEeCcCCc----ccccchh
Confidence 6678899999999999 66666553 567999999999998543222122 6789999999999993 4443332
Q ss_pred cccccccccccccccccccccCCChh--hhhhhccCCCCcCEEEEcCCCCccccCCC--CCccccceEeecCCchHHHHh
Q 008856 455 DKRLGTVLRLPTTLTSLRIEDFPNLE--RLSSSIIDLRNLTELVLRGCPKLKYFPEK--GLPSSLLELWISGCPLIEEKC 530 (551)
Q Consensus 455 ~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~ 530 (551)
. +..+++|++|++++ +.+. .+|..+..+++|++|++++| +++.++.. ..+++|++|++++|. ++..
T Consensus 440 ~------~~~l~~L~~L~l~~-n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~- 509 (570)
T 2z63_A 440 I------FNGLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQ-LKSV- 509 (570)
T ss_dssp T------TTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCC-
T ss_pred h------hhcCCcCcEEECcC-CcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCc-CCCC-
Confidence 2 23578999999999 4665 47888899999999999996 56666332 236899999999984 2221
Q ss_pred hccCcccccccCcccceeec
Q 008856 531 RKDGGQYWDLLTHIPLVAIY 550 (551)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~ 550 (551)
..+.+...+.+..+.++
T Consensus 510 ---~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 510 ---PDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp ---CTTTTTTCTTCCEEECC
T ss_pred ---CHHHhhcccCCcEEEec
Confidence 11234455556555554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=266.58 Aligned_cols=373 Identities=17% Similarity=0.226 Sum_probs=215.2
Q ss_pred cccccchhhhhhhhhhhhccCCCccEEecccCccccc------------------cccccC--CCCCCceEEEccCCCCc
Q 008856 100 KLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK------------------LPQSSF--SLSSLREIEIFKCSSLV 159 (551)
Q Consensus 100 ~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~------------------~~~~~~--~l~~L~~L~l~~c~~l~ 159 (551)
+++.+|+. ++.+ ++|++|++++|. +.. +|..+. ++++|++|++++|....
T Consensus 194 ~l~~ip~~-----l~~l----~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 194 NITFVSKA-----VMRL----TKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp EEEEECGG-----GGGC----TTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred CCccCCHH-----Hhcc----cCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 45555443 5555 677777777654 444 666666 67777777777665455
Q ss_pred ccCC-CCCCCCCcEEEccCCCCcc--ccchhhhhc----cCCCccEEEEecCCCcceecc---ccCCCCccEEEEecCCC
Q 008856 160 SFPE-VALPSKLKKIQIGECDALK--SLPEAWMCD----TNSSLEILSIHGCRSLTYIAA---VQLPSSLKMLTIWYCDN 229 (551)
Q Consensus 160 ~~~~-~~~~~~L~~L~l~~~~~l~--~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 229 (551)
.+|. ++.+++|++|++++|..++ .+|..+... .+++|+.|++++|. ++.++. ...+++|+.|+++++ .
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N-~ 341 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYN-Q 341 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSC-C
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCC-c
Confidence 5554 5556777777777665343 244432211 12567777777643 335554 245567777777764 3
Q ss_pred cc-cccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCC-ccEEEeccCcchhhhHhhh
Q 008856 230 IR-TLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPS-LKSLRVRYCSKLESIAERL 307 (551)
Q Consensus 230 l~-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~ 307 (551)
++ .+ | .+.. +++|++|+++++ .++. +|.++..+. + |++|++++|... .++..+
T Consensus 342 l~g~i--p-~~~~--------l~~L~~L~L~~N-~l~~------lp~~l~~l~------~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 342 LEGKL--P-AFGS--------EIKLASLNLAYN-QITE------IPANFCGFT------EQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp CEEEC--C-CCEE--------EEEESEEECCSS-EEEE------CCTTSEEEC------TTCCEEECCSSCCS-SCCSCC
T ss_pred Cccch--h-hhCC--------CCCCCEEECCCC-cccc------ccHhhhhhc------ccCcEEEccCCcCc-ccchhh
Confidence 43 44 4 4444 445777777663 3333 222222222 4 777777777543 555545
Q ss_pred cCCC--CCcEEEEecCCCccccccccc-------CCCCcceEEecCCCCCccCCCCC-CCCCCccEEEEccCcccccccc
Q 008856 308 DNNT--SLETISIYNCENLKILPSGLH-------KLHQLREISIGSCGNLVSFPGGG-LPCAKLTALEIYDCKRLKALPK 377 (551)
Q Consensus 308 ~~l~--~L~~L~l~~~~~l~~~~~~~~-------~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~ 377 (551)
...+ +|+.|+++++.....+|..+. .+++|++|++++| .+..+|... ..+++|+.|++++| .++.+|.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~ 474 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPK 474 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCH
Confidence 4433 677777777433333354454 5567777777773 444555422 22457777777774 3456655
Q ss_pred cccc--------CCcccceeccc-cccccccC-C--cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC--
Q 008856 378 GLHN--------LSTLQDLTIGG-ALLSLEED-G--LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD-- 443 (551)
Q Consensus 378 ~~~~--------l~~L~~L~l~~-~l~~l~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-- 443 (551)
.+.. +++|+.|++++ .+..+|.. . .+++|++|++++|.... .+.. +..+++|+.|++++|.
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~---~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQ---PLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS--CCCG---GGGCSSCCEEECCSCBCT
T ss_pred HHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC--cChh---hhcCCCCCEEECCCCccc
Confidence 4322 22777777777 66666654 2 56788888888877433 2222 5677888888886541
Q ss_pred CCCc-ccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCC----------c
Q 008856 444 DDTM-MVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGL----------P 512 (551)
Q Consensus 444 ~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~----------~ 512 (551)
.+.. ...+|... ..+++|++|++++ +.++.+|..+. ++|++|++++|+ +..+..... .
T Consensus 550 s~N~l~~~~p~~l-------~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l 618 (636)
T 4eco_A 550 QGNRTLREWPEGI-------TLCPSLTQLQIGS-NDIRKVNEKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYML 618 (636)
T ss_dssp TCCBCCCCCCTTG-------GGCSSCCEEECCS-SCCCBCCSCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEE
T ss_pred ccCcccccChHHH-------hcCCCCCEEECCC-CcCCccCHhHh--CcCCEEECcCCC-CccccHHhcchhhhccccee
Confidence 0100 23445433 3567888888888 57788875543 788888888854 444432222 1
Q ss_pred cccceEeecCCchHH
Q 008856 513 SSLLELWISGCPLIE 527 (551)
Q Consensus 513 ~~L~~L~i~~c~~l~ 527 (551)
...+..++.+|+.++
T Consensus 619 ~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 619 FYDKTQDIRGCDALD 633 (636)
T ss_dssp ECCTTSEEESCGGGC
T ss_pred ecCCccccCCCcccc
Confidence 233455788888764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=258.54 Aligned_cols=345 Identities=19% Similarity=0.231 Sum_probs=263.9
Q ss_pred ccccccccccCCCCCCceEEEccCCCCcc------------------cCC-CC--CCCCCcEEEccCCCCccccchhhhh
Q 008856 132 EGLVKLPQSSFSLSSLREIEIFKCSSLVS------------------FPE-VA--LPSKLKKIQIGECDALKSLPEAWMC 190 (551)
Q Consensus 132 ~~l~~~~~~~~~l~~L~~L~l~~c~~l~~------------------~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (551)
+.+..+|..+.++++|++|+++++ .++. +|. ++ .+++|++|++++|.....+|..+
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-- 269 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-- 269 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT--
T ss_pred CCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH--
Confidence 455668999999999999999996 4776 776 66 79999999999988777777652
Q ss_pred ccCCCccEEEEecCCCcce--eccc-cC------CCCccEEEEecCCCcccccccc--cccccCCCcccccCCccEEEEe
Q 008856 191 DTNSSLEILSIHGCRSLTY--IAAV-QL------PSSLKMLTIWYCDNIRTLTVEE--GIQCSSSSRRYTSYLLEHLGIR 259 (551)
Q Consensus 191 ~~~~~L~~L~l~~~~~~~~--~~~~-~~------~~~L~~L~l~~~~~l~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~ 259 (551)
..+++|++|++++|..++. +|.. .. +++|+.|+++++ .++.+ |. .+.. +++|++|+++
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~i--p~~~~l~~--------l~~L~~L~L~ 338 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTF--PVETSLQK--------MKKLGMLECL 338 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSC--CCHHHHTT--------CTTCCEEECC
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCcc--Cchhhhcc--------CCCCCEEeCc
Confidence 2348999999999764543 5543 22 389999999996 56666 87 6776 7789999999
Q ss_pred cCCCCc-ccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCC-CcEEEEecCCCcccccccccCC--C
Q 008856 260 YCPSLT-CIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTS-LETISIYNCENLKILPSGLHKL--H 335 (551)
Q Consensus 260 ~c~~l~-~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~--~ 335 (551)
++ .++ . +| .+..+. +|++|++++|... .++..+..+++ |++|++++ +.+..+|..+... +
T Consensus 339 ~N-~l~g~-ip------~~~~l~------~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 339 YN-QLEGK-LP------AFGSEI------KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVS 402 (636)
T ss_dssp SC-CCEEE-CC------CCEEEE------EESEEECCSSEEE-ECCTTSEEECTTCCEEECCS-SCCSSCCSCCCTTCSS
T ss_pred CC-cCccc-hh------hhCCCC------CCCEEECCCCccc-cccHhhhhhcccCcEEEccC-CcCcccchhhhhcccC
Confidence 94 444 4 43 122222 5999999999654 77777889999 99999999 5677888777664 4
Q ss_pred CcceEEecCCCCCccCCCCCC-------CCCCccEEEEccCcccccccccc-ccCCcccceeccc-cccccccCCc--C-
Q 008856 336 QLREISIGSCGNLVSFPGGGL-------PCAKLTALEIYDCKRLKALPKGL-HNLSTLQDLTIGG-ALLSLEEDGL--P- 403 (551)
Q Consensus 336 ~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~c~~l~~~~~~~-~~l~~L~~L~l~~-~l~~l~~~~~--~- 403 (551)
+|++|++++|......|.... ..++|+.|++++| .++.+|..+ ..+++|+.|++++ .+..++.... .
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 899999999755444444333 4569999999995 566787654 4689999999999 7777776522 1
Q ss_pred ------CCcceeEecCCchhhhhhhhhccccc--cCCCccEEEEeccCCCCccccccccccccccccccccccccccccc
Q 008856 404 ------TNLHSLVIRGNMEIWKSMIEWGRGFH--RFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 404 ------~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
++|++|++++|... .+... +. .+++|++|++++|. +..+|... ..+++|++|++++
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~~~l~~L~~L~Ls~N~----l~~ip~~~-------~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDD----FRATTLPYLVGIDLSYNS----FSKFPTQP-------LNSSTLKGFGIRN 545 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGG----GSTTTCTTCCEEECCSSC----CSSCCCGG-------GGCSSCCEEECCS
T ss_pred ccccccCCccEEECcCCcCC-ccChh----hhhccCCCcCEEECCCCC----CCCcChhh-------hcCCCCCEEECCC
Confidence 29999999999854 33322 44 89999999999994 67787765 3578999999964
Q ss_pred ------CCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCch
Q 008856 476 ------FPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525 (551)
Q Consensus 476 ------~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 525 (551)
+.-...+|..+..+++|++|++++| +++.+|.. +.++|++|++++|+.
T Consensus 546 N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCTT
T ss_pred CcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCCC
Confidence 2224567888999999999999995 56888875 448999999999963
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-28 Score=255.27 Aligned_cols=448 Identities=15% Similarity=0.121 Sum_probs=240.2
Q ss_pred cceEEeCCCCCcccccc-ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccE
Q 008856 14 LCKMEIGGCKKVVWRSA-TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKR 92 (551)
Q Consensus 14 L~~L~l~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 92 (551)
.++++++++....++.. .++|+.|++.++.... ++...+..+++|++|++++ +.++.+ +...+..+++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~-N~l~~~---~~~~~~~l~~L~~ 104 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISE----LRMPDISFLSELRVLRLSH-NRIRSL---DFHVFLFNQDLEY 104 (562)
T ss_dssp CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCS-CCCCEE---CTTTTTTCTTCCE
T ss_pred CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccc----cChhhhccCCCccEEECCC-CCCCcC---CHHHhCCCCCCCE
Confidence 35666666655555544 3456666666655332 2222334466666666666 345544 4445566666666
Q ss_pred EeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc--ccccCCCCCCceEEEccCCCCcccCCCCCCCCC
Q 008856 93 LTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL--PQSSFSLSSLREIEIFKCSSLVSFPEVALPSKL 170 (551)
Q Consensus 93 L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L 170 (551)
|+++++ .++.++.. .+ ++|++|++++|. +..+ |..+..+++|++|+++++ .++.. .+..+++|
T Consensus 105 L~Ls~N-~l~~lp~~-------~l----~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~L 169 (562)
T 3a79_B 105 LDVSHN-RLQNISCC-------PM----ASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA-KFRQL-DLLPVAHL 169 (562)
T ss_dssp EECTTS-CCCEECSC-------CC----TTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS-BCCTT-TTGGGTTS
T ss_pred EECCCC-cCCccCcc-------cc----ccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC-ccccC-chhhhhhc
Confidence 666664 35555442 22 666666666643 3332 345666666666666653 33321 12333444
Q ss_pred --cEEEccCCCC--ccccchhhhhccCCCccEEEEecCCCcceeccc--cCCCCccEEEEecCCC-cccc-ccccccccc
Q 008856 171 --KKIQIGECDA--LKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPSSLKMLTIWYCDN-IRTL-TVEEGIQCS 242 (551)
Q Consensus 171 --~~L~l~~~~~--l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~-l~~l-~~~~~~~~~ 242 (551)
++|++++|.. ....+..+.... ...-.++++++.....++.. ..+++|+.++++++.. ...+ .....+..
T Consensus 170 ~L~~L~L~~n~l~~~~~~~~~l~~l~-~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~- 247 (562)
T 3a79_B 170 HLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR- 247 (562)
T ss_dssp CEEEEEEEESSCCCCSSSCCEEEECC-EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS-
T ss_pred eeeEEEeecccccccccCcccccccC-cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhc-
Confidence 6666665442 111111100000 00112233333222211111 2234566666655320 0000 00111222
Q ss_pred CCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhh-----cCCCCCcEEE
Q 008856 243 SSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERL-----DNNTSLETIS 317 (551)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~ 317 (551)
.++++.+++.++. +.. -.....+..+. ..+|++|++++|.....++..+ ..++.|+.++
T Consensus 248 -------l~~L~~L~L~~~~-l~~-~~~~~~~~~~~-------~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 248 -------GPTLLNVTLQHIE-TTW-KCSVKLFQFFW-------PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp -------CSSCEEEEEEEEE-ECH-HHHHHHHHHHT-------TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred -------cCcceEEEecCCc-CcH-HHHHHHHHhhh-------cccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 3345555555421 110 00000111000 1147777777775443444433 3344444444
Q ss_pred EecCCCccccc-cccc---CCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-
Q 008856 318 IYNCENLKILP-SGLH---KLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG- 392 (551)
Q Consensus 318 l~~~~~l~~~~-~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~- 392 (551)
+.. +.+ .+| ..+. ...+|++|++++|. +..++. ...+++|+.|+++++.....+|..+.++++|+.|++++
T Consensus 312 ~~~-~~~-~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 312 VKN-QVF-LFSKEALYSVFAEMNIKMLSISDTP-FIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEE-CCC-SSCHHHHHHHHHTCCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred ccc-cee-ecChhhhhhhhccCcceEEEccCCC-cccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 444 222 333 1111 12568888888853 332221 13455899999998654444677788899999999988
Q ss_pred ccccccc----CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccc-cccccccccccccccccc
Q 008856 393 ALLSLEE----DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMV-SFPLEDKRLGTVLRLPTT 467 (551)
Q Consensus 393 ~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 467 (551)
.+..++. ...+++|++|++++|.......... +..+++|++|++++|. +. .++.. .+++
T Consensus 388 ~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~~l~~L~~L~l~~n~----l~~~~~~~---------l~~~ 451 (562)
T 3a79_B 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT---CAWAESILVLNLSSNM----LTGSVFRC---------LPPK 451 (562)
T ss_dssp CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC---CCCCTTCCEEECCSSC----CCGGGGSS---------CCTT
T ss_pred CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh---hcCcccCCEEECCCCC----CCcchhhh---------hcCc
Confidence 6665442 3567899999999988443232222 6678899999999983 42 23321 3368
Q ss_pred ccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC--CCccccceEeecCCc
Q 008856 468 LTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK--GLPSSLLELWISGCP 524 (551)
Q Consensus 468 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 524 (551)
|++|++++ +.++.+|.++..+++|++|++++ ++++.+|.. ..+++|+.|++++++
T Consensus 452 L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 452 VKVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CSEEECCS-SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCEEECCC-CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 99999998 68888887777899999999999 568888874 336789999998875
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=259.84 Aligned_cols=344 Identities=16% Similarity=0.195 Sum_probs=247.8
Q ss_pred cccccccccCCCCCCceEEEccCCCCcc------------------cCC-CC--CCCCCcEEEccCCCCccccchhhhhc
Q 008856 133 GLVKLPQSSFSLSSLREIEIFKCSSLVS------------------FPE-VA--LPSKLKKIQIGECDALKSLPEAWMCD 191 (551)
Q Consensus 133 ~l~~~~~~~~~l~~L~~L~l~~c~~l~~------------------~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (551)
.+..+|..+.++++|++|+++++ .++. +|. ++ .+++|++|++++|.....+|..+ .
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~ 512 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL--Y 512 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--G
T ss_pred cccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH--h
Confidence 44457888888888999999885 4665 666 44 78889999998887666666543 2
Q ss_pred cCCCccEEEEecCCCcce--eccc--------cCCCCccEEEEecCCCcccccccc--cccccCCCcccccCCccEEEEe
Q 008856 192 TNSSLEILSIHGCRSLTY--IAAV--------QLPSSLKMLTIWYCDNIRTLTVEE--GIQCSSSSRRYTSYLLEHLGIR 259 (551)
Q Consensus 192 ~~~~L~~L~l~~~~~~~~--~~~~--------~~~~~L~~L~l~~~~~l~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~ 259 (551)
.+++|+.|++++|..++. +|.. ..+++|+.|+++++ .++.+ |. .+.. +++|+.|+++
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~i--p~~~~l~~--------L~~L~~L~Ls 581 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEF--PASASLQK--------MVKLGLLDCV 581 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBC--CCHHHHTT--------CTTCCEEECT
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCcc--CChhhhhc--------CCCCCEEECC
Confidence 347889999888653442 4432 23458999999885 56555 77 6766 7789999998
Q ss_pred cCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCC-CcEEEEecCCCcccccccccCCC--C
Q 008856 260 YCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTS-LETISIYNCENLKILPSGLHKLH--Q 336 (551)
Q Consensus 260 ~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~--~ 336 (551)
++ .++. +|. +..+. +|+.|++++|... .++..+..+++ |+.|++++ +.+..+|..+...+ +
T Consensus 582 ~N-~l~~-lp~------~~~L~------~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 582 HN-KVRH-LEA------FGTNV------KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYV 645 (876)
T ss_dssp TS-CCCB-CCC------CCTTS------EESEEECCSSCCS-CCCTTSCEECTTCCEEECCS-SCCCSCCSCCCTTCSSC
T ss_pred CC-Cccc-chh------hcCCC------cceEEECcCCccc-cchHHHhhccccCCEEECcC-CCCCcCchhhhccccCC
Confidence 84 4444 431 11111 5999999998755 77777888888 99999999 55778887766654 4
Q ss_pred cceEEecCCCCCccCCC-----CCCCCCCccEEEEccCcccccccccc-ccCCcccceeccc-cccccccCCc-------
Q 008856 337 LREISIGSCGNLVSFPG-----GGLPCAKLTALEIYDCKRLKALPKGL-HNLSTLQDLTIGG-ALLSLEEDGL------- 402 (551)
Q Consensus 337 L~~L~l~~~~~l~~l~~-----~~~~~~~L~~L~l~~c~~l~~~~~~~-~~l~~L~~L~l~~-~l~~l~~~~~------- 402 (551)
|+.|++++|.-...+|. .....++|+.|++++| .++.+|..+ ..+++|+.|++++ .+..+|....
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 99999999654333332 1123458999999985 466777655 4789999999998 7777776422
Q ss_pred --CCCcceeEecCCchhhhhhhhhccccc--cCCCccEEEEeccCCCCccccccccccccccccccccccccccccc---
Q 008856 403 --PTNLHSLVIRGNMEIWKSMIEWGRGFH--RFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED--- 475 (551)
Q Consensus 403 --~~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--- 475 (551)
+++|++|++++|... .+... +. .+++|+.|++++|. +..+|... ..+++|+.|++++
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~----l~~~~l~~L~~L~Ls~N~----L~~lp~~l-------~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDD----FRATTLPYLSNMDVSYNC----FSSFPTQP-------LNSSQLKAFGIRHQRD 788 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGG----GSTTTCTTCCEEECCSSC----CSSCCCGG-------GGCTTCCEEECCCCBC
T ss_pred cccCCccEEECCCCCCc-cchHH----hhhccCCCcCEEEeCCCC----CCccchhh-------hcCCCCCEEECCCCCC
Confidence 138999999999744 33222 44 88999999999984 66777655 3678999999976
Q ss_pred ---CCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCch
Q 008856 476 ---FPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCPL 525 (551)
Q Consensus 476 ---~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 525 (551)
+.-...+|..+.++++|++|++++| .+..+|.. +.++|+.|++++|+.
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred cccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 2224567788889999999999996 46888875 457999999999974
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=255.41 Aligned_cols=364 Identities=15% Similarity=0.185 Sum_probs=261.5
Q ss_pred hhhhhccCCCccEEecccCccccc------------------cccccC--CCCCCceEEEccCCCCcccCC-CCCCCCCc
Q 008856 113 QQQLCQLSCRLEYLILSYCEGLVK------------------LPQSSF--SLSSLREIEIFKCSSLVSFPE-VALPSKLK 171 (551)
Q Consensus 113 ~~~l~~~~~~L~~L~L~~~~~l~~------------------~~~~~~--~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~ 171 (551)
+..+ ++|++|+|++|. +.. +|..+. .+++|++|++++|.....+|. ++.+++|+
T Consensus 444 l~~L----~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 444 IQRL----TKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp GGGC----TTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred HhcC----CCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 6666 999999999975 555 888887 999999999999876777776 77899999
Q ss_pred EEEccCCCCccc--cchhhhh-----ccCCCccEEEEecCCCcceecc---ccCCCCccEEEEecCCCcccccccccccc
Q 008856 172 KIQIGECDALKS--LPEAWMC-----DTNSSLEILSIHGCRSLTYIAA---VQLPSSLKMLTIWYCDNIRTLTVEEGIQC 241 (551)
Q Consensus 172 ~L~l~~~~~l~~--~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 241 (551)
+|++++|..+.. +|..+.. ..+++|+.|++++|. ++.+|. ...+++|+.|+++++ .++.+ | .+..
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~l--p-~~~~ 593 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHL--E-AFGT 593 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTS-CCCBC--C-CCCT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCC-Ccccc--h-hhcC
Confidence 999999874553 5554322 223689999999965 557776 366789999999985 56665 6 6665
Q ss_pred cCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCC--CCcEEEEe
Q 008856 242 SSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNT--SLETISIY 319 (551)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~ 319 (551)
+++|+.|+++++. +.. +|..+..+. .+|++|++++|... .++..+..++ +|+.|+++
T Consensus 594 --------L~~L~~L~Ls~N~-l~~------lp~~l~~l~-----~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 594 --------NVKLTDLKLDYNQ-IEE------IPEDFCAFT-----DQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp --------TSEESEEECCSSC-CSC------CCTTSCEEC-----TTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred --------CCcceEEECcCCc-ccc------chHHHhhcc-----ccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 6789999999944 444 333222222 13999999999754 6666666654 49999999
Q ss_pred cCCCccccc---cccc--CCCCcceEEecCCCCCccCCCCCC-CCCCccEEEEccCcccccccccccc--------CCcc
Q 008856 320 NCENLKILP---SGLH--KLHQLREISIGSCGNLVSFPGGGL-PCAKLTALEIYDCKRLKALPKGLHN--------LSTL 385 (551)
Q Consensus 320 ~~~~l~~~~---~~~~--~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~--------l~~L 385 (551)
+|.....+| ..+. .+++|++|++++| .+..+|.... .+++|+.|++++| .++.+|..+.. +++|
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCc
Confidence 954322222 2233 3458999999995 5667776332 4569999999995 57788775543 3399
Q ss_pred cceeccc-cccccccC-C--cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC-----CCCcccccccccc
Q 008856 386 QDLTIGG-ALLSLEED-G--LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD-----DDTMMVSFPLEDK 456 (551)
Q Consensus 386 ~~L~l~~-~l~~l~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~~~~~~ 456 (551)
+.|++++ .+..+|.. . .+++|+.|++++|.... + +.. +..+++|+.|++++|. .. ...+|...
T Consensus 731 ~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-l-p~~---l~~L~~L~~L~Ls~N~~ls~N~l--~~~ip~~l- 802 (876)
T 4ecn_A 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-F-PTQ---PLNSSQLKAFGIRHQRDAEGNRI--LRQWPTGI- 802 (876)
T ss_dssp CEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-C-CCG---GGGCTTCCEEECCCCBCTTCCBC--CCCCCTTG-
T ss_pred cEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-c-chh---hhcCCCCCEEECCCCCCcccccc--cccChHHH-
Confidence 9999999 77788765 3 68999999999998443 2 332 6789999999998742 11 33455443
Q ss_pred cccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCC----------ccccceEeecCCchH
Q 008856 457 RLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGL----------PSSLLELWISGCPLI 526 (551)
Q Consensus 457 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~----------~~~L~~L~i~~c~~l 526 (551)
..+++|+.|++++ +.+..+|..+. ++|+.|++++|+ +..+....+ +..-+..+|.+|+.+
T Consensus 803 ------~~L~~L~~L~Ls~-N~L~~Ip~~l~--~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L 872 (876)
T 4ecn_A 803 ------TTCPSLIQLQIGS-NDIRKVDEKLT--PQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDAL 872 (876)
T ss_dssp ------GGCSSCCEEECCS-SCCCBCCSCCC--SSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred ------hcCCCCCEEECCC-CCCCccCHhhc--CCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCc
Confidence 3678999999999 67788986653 799999999965 554433222 112233467888876
Q ss_pred H
Q 008856 527 E 527 (551)
Q Consensus 527 ~ 527 (551)
.
T Consensus 873 ~ 873 (876)
T 4ecn_A 873 G 873 (876)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=244.83 Aligned_cols=428 Identities=15% Similarity=0.090 Sum_probs=289.7
Q ss_pred CCcceEEeCCCCCcccc----ccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc
Q 008856 12 PALCKMEIGGCKKVVWR----SATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI 87 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 87 (551)
++|++|++++|....++ ..+++|++|++.++.... +++..+..+++|++|++++ +.++.+ +.. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~-N~l~~l---p~~---~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSH-NKLVKI---SCH---PT 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCS-SCCCEE---ECC---CC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCC-Cceeec---Ccc---cc
Confidence 78999999999876654 337889999999987553 3333356689999999999 577777 544 78
Q ss_pred CCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCC--ceEEEccCCC--CcccCC
Q 008856 88 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSL--REIEIFKCSS--LVSFPE 163 (551)
Q Consensus 88 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~ 163 (551)
++|++|++++|. ++.++.. ..++.+ ++|++|++++|. +.. ..+..+++| ++|+++++.. ....+.
T Consensus 90 ~~L~~L~L~~N~-l~~~~~p---~~~~~l----~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 90 VNLKHLDLSFNA-FDALPIC---KEFGNM----SQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp CCCSEEECCSSC-CSSCCCC---GGGGGC----TTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred CCccEEeccCCc-cccccch---hhhccC----CcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccc
Confidence 999999999964 7664321 237777 999999999964 333 346677788 9999998643 222222
Q ss_pred -CCCCC-CCcEEEccCCCCccccchhhhhccCCCccEEEEecCC-------CcceeccccCCCCccEEEEecCCCccccc
Q 008856 164 -VALPS-KLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCR-------SLTYIAAVQLPSSLKMLTIWYCDNIRTLT 234 (551)
Q Consensus 164 -~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 234 (551)
+..+. +...++++++.....++.... ..+++|+.|++++|. ....++....+++|+.|+++++. +....
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~ 236 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE-TTWNS 236 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE-EEHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecchhhhccccchhhccccccc-cCHHH
Confidence 22222 223556666654444433211 234789999998864 22222323556789999988752 22110
Q ss_pred ccccccccCCCcccccCCccEEEEecCCCCc-ccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhH-hhhcCC--
Q 008856 235 VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLT-CIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIA-ERLDNN-- 310 (551)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l-- 310 (551)
+.++.. ....++|++|++++|. +. . +|...+.....++. +|+.+++++|.. .++ ..+..+
T Consensus 237 -~~~~~~-----~~~~~~L~~L~l~~n~-l~~~-~p~~~~~~~~~~l~------~L~~l~l~~n~~--~~p~~~~~~~~~ 300 (520)
T 2z7x_B 237 -FIRILQ-----LVWHTTVWYFSISNVK-LQGQ-LDFRDFDYSGTSLK------ALSIHQVVSDVF--GFPQSYIYEIFS 300 (520)
T ss_dssp -HHHHHH-----HHHTSSCSEEEEEEEE-EESC-CCCCCCCCCSCCCC------EEEEEEEEECCC--CSCTHHHHHHHH
T ss_pred -HHHHHH-----HhhhCcccEEEeeccc-ccCc-cccchhhcccccCc------eeEeccccccce--ecchhhhhcccc
Confidence 111110 0113369999999854 22 2 33221110002222 488999988865 222 222222
Q ss_pred -CCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccc---ccccccccCCccc
Q 008856 311 -TSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLK---ALPKGLHNLSTLQ 386 (551)
Q Consensus 311 -~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~---~~~~~~~~l~~L~ 386 (551)
.+|+.|+++++ .+..++ ....+++|++|++++|.-...++.....+++|+.|++++|. ++ .+|..+..+++|+
T Consensus 301 ~~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~ 377 (520)
T 2z7x_B 301 NMNIKNFTVSGT-RMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQ 377 (520)
T ss_dssp TCCCSEEEEESS-CCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCC
T ss_pred cCceeEEEcCCC-cccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCC
Confidence 67999999995 454442 12578999999999965444466666667799999999964 44 4556788999999
Q ss_pred ceeccc-cccc-cccC--CcCCCcceeEecCCchhhhhhhhhccccccC-CCccEEEEeccCCCCccccccccccccccc
Q 008856 387 DLTIGG-ALLS-LEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRF-SSLRHLTIDGCDDDTMMVSFPLEDKRLGTV 461 (551)
Q Consensus 387 ~L~l~~-~l~~-l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 461 (551)
.|++++ .+.. ++.. ..+++|++|++++|...... + ..+ ++|+.|++++|. +..+|...
T Consensus 378 ~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~------~~l~~~L~~L~Ls~N~----l~~ip~~~------ 440 (520)
T 2z7x_B 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-F------RCLPPRIKVLDLHSNK----IKSIPKQV------ 440 (520)
T ss_dssp EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG-G------GSCCTTCCEEECCSSC----CCCCCGGG------
T ss_pred EEECCCCcCCcccccchhccCccCCEEECcCCCCCcch-h------hhhcccCCEEECCCCc----ccccchhh------
Confidence 999999 7776 7754 45789999999999844322 2 223 799999999994 77888755
Q ss_pred ccccccccccccccCCChhhhhhh-ccCCCCcCEEEEcCCC
Q 008856 462 LRLPTTLTSLRIEDFPNLERLSSS-IIDLRNLTELVLRGCP 501 (551)
Q Consensus 462 ~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 501 (551)
..+++|++|++++ +.++.+|.. +..+++|++|++++|+
T Consensus 441 -~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 441 -VKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 2678999999999 689999865 8889999999999965
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=241.82 Aligned_cols=217 Identities=16% Similarity=0.120 Sum_probs=155.1
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc---cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL---PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALE 365 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 365 (551)
|+.+++..+..... .....+++|+.+++++ +.+... +.....+.+|+++++..+ .....+.....+++|+.++
T Consensus 351 L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~l~ 426 (635)
T 4g8a_A 351 LKRLTFTSNKGGNA--FSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQLEHLD 426 (635)
T ss_dssp CCEEEEESCCSCCB--CCCCBCTTCCEEECCS-SCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTCCEEE
T ss_pred hhhcccccccCCCC--cccccccccccchhhc-cccccccccccchhhhhhhhhhhcccc-ccccccccccccccccchh
Confidence 66666666543221 1234577888888877 434322 334456778888888874 3334444555567899999
Q ss_pred EccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
+.+++.....+ ..+..+++++.++++. .+...... ..++.|++|++++|.......+.. +..+++|++|++++
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQ 503 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTT
T ss_pred hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCC
Confidence 98876554443 4567889999999988 55555443 457899999999998666555444 78899999999999
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCCCccccCCCC---Cccccce
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFPEKG---LPSSLLE 517 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~ 517 (551)
|. +..++... +..+++|++|++++ |+++.++ ..+.++++|++|++++ ++++.++... ++++|+.
T Consensus 504 N~----L~~l~~~~------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 504 CQ----LEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp SC----CCEECTTT------TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCE
T ss_pred Cc----cCCcChHH------HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCE
Confidence 94 77765533 34678999999999 7898886 5688899999999999 5677776643 3478999
Q ss_pred EeecCCc
Q 008856 518 LWISGCP 524 (551)
Q Consensus 518 L~i~~c~ 524 (551)
|+++++|
T Consensus 572 L~L~~Np 578 (635)
T 4g8a_A 572 LNLTQND 578 (635)
T ss_dssp EECTTCC
T ss_pred EEeeCCC
Confidence 9998754
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=228.66 Aligned_cols=346 Identities=15% Similarity=0.201 Sum_probs=182.1
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
++++++|+++++ .++.+ + .+..+++|++|++++| .++.+++ +..+ ++|++|++++| .+..++
T Consensus 45 l~~l~~L~l~~~-~i~~l---~--~~~~l~~L~~L~Ls~n-~l~~~~~------~~~l----~~L~~L~l~~n-~l~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSI---D--GVEYLNNLTQINFSNN-QLTDITP------LKNL----TKLVDILMNNN-QIADIT 106 (466)
T ss_dssp HHTCCEEECCSS-CCCCC---T--TGGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSS-CCCCCG
T ss_pred hccccEEecCCC-CCccC---c--chhhhcCCCEEECCCC-ccCCchh------hhcc----ccCCEEECCCC-ccccCh
Confidence 456666666663 34433 2 2455666666666664 3555433 3333 66666666664 334444
Q ss_pred cccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCC
Q 008856 139 QSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSS 218 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 218 (551)
. +..+++|++|++++| .++.++++..+++|++|++++|. +..++.. ..+++|+.|++.+ .+..++....+++
T Consensus 107 ~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~l~~--~~~~~~~~~~l~~ 178 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISAL---SGLTSLQQLSFGN--QVTDLKPLANLTT 178 (466)
T ss_dssp G-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGGG---TTCTTCSEEEEEE--SCCCCGGGTTCTT
T ss_pred h-hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChhh---ccCCcccEeecCC--cccCchhhccCCC
Confidence 3 556666666666664 45555555556666666666543 3333322 2335555555543 1222222233344
Q ss_pred ccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCc
Q 008856 219 LKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCS 298 (551)
Q Consensus 219 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~ 298 (551)
|+.|+++++ .++.+ + .+.. +++ |++|++++|.
T Consensus 179 L~~L~l~~n-~l~~~--~-~l~~--------l~~------------------------------------L~~L~l~~n~ 210 (466)
T 1o6v_A 179 LERLDISSN-KVSDI--S-VLAK--------LTN------------------------------------LESLIATNNQ 210 (466)
T ss_dssp CCEEECCSS-CCCCC--G-GGGG--------CTT------------------------------------CSEEECCSSC
T ss_pred CCEEECcCC-cCCCC--h-hhcc--------CCC------------------------------------CCEEEecCCc
Confidence 444444443 12222 1 1111 223 5555555554
Q ss_pred chhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccc
Q 008856 299 KLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKG 378 (551)
Q Consensus 299 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 378 (551)
.....+ ++.+++|+.|++++ +.+..+ ..+..+++|++|++++| .+..++. ...+++|+.|++++| .++.++.
T Consensus 211 l~~~~~--~~~l~~L~~L~l~~-n~l~~~-~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~- 282 (466)
T 1o6v_A 211 ISDITP--LGILTNLDELSLNG-NQLKDI-GTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGAN-QISNISP- 282 (466)
T ss_dssp CCCCGG--GGGCTTCCEEECCS-SCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-
T ss_pred cccccc--ccccCCCCEEECCC-CCcccc-hhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCC-ccCcccc-
Confidence 322221 44456666666665 334444 23455666666666664 3333322 223346666666663 3444443
Q ss_pred cccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccc
Q 008856 379 LHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKR 457 (551)
Q Consensus 379 ~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 457 (551)
+..+++|+.|++++ .+..++....+++|++|++++|.... ..+ +..+++|++|++++|. +..++.-
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~-~~~-----~~~l~~L~~L~l~~n~----l~~~~~l--- 349 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-ISP-----VSSLTKLQRLFFYNNK----VSDVSSL--- 349 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CGG-----GGGCTTCCEEECCSSC----CCCCGGG---
T ss_pred ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCC-chh-----hccCccCCEeECCCCc----cCCchhh---
Confidence 55666677777766 55555555556777777777776332 221 4567777788877773 4444321
Q ss_pred ccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccC
Q 008856 458 LGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 458 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 507 (551)
..+++|+.|++++ +.+..++. +..+++|++|++++| .++.+|
T Consensus 350 -----~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p 391 (466)
T 1o6v_A 350 -----ANLTNINWLSAGH-NQISDLTP-LANLTRITQLGLNDQ-AWTNAP 391 (466)
T ss_dssp -----TTCTTCCEEECCS-SCCCBCGG-GTTCTTCCEEECCCE-EEECCC
T ss_pred -----ccCCCCCEEeCCC-CccCccch-hhcCCCCCEEeccCC-cccCCc
Confidence 2556778888877 45555543 667788888888874 354444
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=229.83 Aligned_cols=195 Identities=26% Similarity=0.307 Sum_probs=81.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|++|++++|... .++ .++.+++|++|++++ +.+..+|.. +++|++|++++| .+..+|.. +++|+.|+++
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~-N~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADN-NLLKTLPDL---PPSLEALNVRDN-YLTDLPEL---PQSLTFLDVS 285 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS-SCCSSCCSC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCC-CcCCccccc---ccccCEEECCCC-cccccCcc---cCcCCEEECc
Confidence 3666666666432 333 255666666666666 344444432 356666666663 34444432 1356666666
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+| .++.++.. .++|+.|++++ .+..++. .+++|++|++++|.... .+ ..+++|++|++++|.
T Consensus 286 ~N-~l~~l~~~---~~~L~~L~l~~N~l~~i~~--~~~~L~~L~Ls~N~l~~--lp------~~~~~L~~L~L~~N~--- 348 (454)
T 1jl5_A 286 EN-IFSGLSEL---PPNLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIE--LP------ALPPRLERLIASFNH--- 348 (454)
T ss_dssp SS-CCSEESCC---CTTCCEEECCSSCCSEECC--CCTTCCEEECCSSCCSC--CC------CCCTTCCEEECCSSC---
T ss_pred CC-ccCcccCc---CCcCCEEECcCCcCCcccC--CcCcCCEEECCCCcccc--cc------ccCCcCCEEECCCCc---
Confidence 63 24333321 14566666665 4444432 22466666666665221 11 124566666666662
Q ss_pred cccccccccccccccccccccccccccccCCChhh---hhhhccCC-------------CCcCEEEEcCCCCccccCCCC
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLER---LSSSIIDL-------------RNLTELVLRGCPKLKYFPEKG 510 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~~~~~~l-------------~~L~~L~l~~c~~l~~l~~~~ 510 (551)
+..+|. .+++|++|++++ +.+.. +|.++..+ ++|++|++++ +.++.++.
T Consensus 349 -l~~lp~----------~l~~L~~L~L~~-N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~-N~l~~~~~-- 413 (454)
T 1jl5_A 349 -LAEVPE----------LPQNLKQLHVEY-NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET-NPLREFPD-- 413 (454)
T ss_dssp -CSCCCC----------CCTTCCEEECCS-SCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred -cccccc----------hhhhccEEECCC-CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC-CcCCcccc--
Confidence 445554 235666666666 44444 33444444 8899999999 45665533
Q ss_pred CccccceEeecCCc
Q 008856 511 LPSSLLELWISGCP 524 (551)
Q Consensus 511 ~~~~L~~L~i~~c~ 524 (551)
++++++.|.+.+|.
T Consensus 414 iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 414 IPESVEDLRMNSER 427 (454)
T ss_dssp --------------
T ss_pred chhhHhheeCcCcc
Confidence 56788888888874
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=224.96 Aligned_cols=348 Identities=16% Similarity=0.189 Sum_probs=213.3
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+.+++.|++.++.... +++ ...+++|++|+++++ .++.+ +. +..+++|++|++++| .+..+++
T Consensus 45 l~~l~~L~l~~~~i~~----l~~--~~~l~~L~~L~Ls~n-~l~~~---~~--~~~l~~L~~L~l~~n-~l~~~~~---- 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS----IDG--VEYLNNLTQINFSNN-QLTDI---TP--LKNLTKLVDILMNNN-QIADITP---- 107 (466)
T ss_dssp HHTCCEEECCSSCCCC----CTT--GGGCTTCCEEECCSS-CCCCC---GG--GTTCTTCCEEECCSS-CCCCCGG----
T ss_pred hccccEEecCCCCCcc----Ccc--hhhhcCCCEEECCCC-ccCCc---hh--hhccccCCEEECCCC-ccccChh----
Confidence 5566666666654332 221 234677777777773 45544 32 566777777777775 3555433
Q ss_pred hhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMC 190 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (551)
+..+ ++|++|++++| .+..++. +..+++|++|++++| .+..++.+..+++|++|++++ .+...+..
T Consensus 108 --~~~l----~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~--~~~~~~~~--- 173 (466)
T 1o6v_A 108 --LANL----TNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGN--QVTDLKPL--- 173 (466)
T ss_dssp --GTTC----TTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEE--SCCCCGGG---
T ss_pred --hcCC----CCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCC-ccCCChhhccCCcccEeecCC--cccCchhh---
Confidence 3444 77777777765 3444543 667777777777764 455555566677777777753 23333322
Q ss_pred ccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccC
Q 008856 191 DTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSK 270 (551)
Q Consensus 191 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 270 (551)
..+++|+.|++++|. ++.++....+++|+.|+++++ .+..+ +. +.. +++|+.|+++++ .++. ++.
T Consensus 174 ~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~--~~-~~~--------l~~L~~L~l~~n-~l~~-~~~ 238 (466)
T 1o6v_A 174 ANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNN-QISDI--TP-LGI--------LTNLDELSLNGN-QLKD-IGT 238 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS-CCCCC--GG-GGG--------CTTCCEEECCSS-CCCC-CGG
T ss_pred ccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCC-ccccc--cc-ccc--------cCCCCEEECCCC-Cccc-chh
Confidence 344677777777653 444444455677777777775 33333 21 222 456778877774 3443 111
Q ss_pred CCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCcc
Q 008856 271 NELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVS 350 (551)
Q Consensus 271 ~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~ 350 (551)
+..+ ++|++|++++|......+ +..+++|+.|++++ +.+..++. +..+++|++|++++| .+..
T Consensus 239 ------l~~l------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~L~~n-~l~~ 301 (466)
T 1o6v_A 239 ------LASL------TNLTDLDLANNQISNLAP--LSGLTKLTELKLGA-NQISNISP-LAGLTALTNLELNEN-QLED 301 (466)
T ss_dssp ------GGGC------TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS-SCCCCCGG-GTTCTTCSEEECCSS-CCSC
T ss_pred ------hhcC------CCCCEEECCCCccccchh--hhcCCCCCEEECCC-CccCcccc-ccCCCccCeEEcCCC-cccC
Confidence 1111 148888888875433322 67788888888888 45665544 667888888888885 4444
Q ss_pred CCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccc
Q 008856 351 FPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFH 429 (551)
Q Consensus 351 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 429 (551)
++. ...+++|+.|++++|. ++.++. +..+++|+.|++++ .+..++....+++|++|++++|+... ..+ +.
T Consensus 302 ~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-----~~ 372 (466)
T 1o6v_A 302 ISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD-LTP-----LA 372 (466)
T ss_dssp CGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CGG-----GT
T ss_pred chh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCc-cch-----hh
Confidence 443 2345588888888854 444443 67788888888887 66666655667888888888887433 222 56
Q ss_pred cCCCccEEEEeccCCCCcccccccc
Q 008856 430 RFSSLRHLTIDGCDDDTMMVSFPLE 454 (551)
Q Consensus 430 ~l~~L~~L~l~~~~~~~~~~~~~~~ 454 (551)
.+++|+.|++++|. +..+|..
T Consensus 373 ~l~~L~~L~l~~n~----~~~~p~~ 393 (466)
T 1o6v_A 373 NLTRITQLGLNDQA----WTNAPVN 393 (466)
T ss_dssp TCTTCCEEECCCEE----EECCCBC
T ss_pred cCCCCCEEeccCCc----ccCCchh
Confidence 77888888888883 5555543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=231.86 Aligned_cols=439 Identities=15% Similarity=0.101 Sum_probs=271.8
Q ss_pred CcceEEeCCCCCcccccc----ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccC
Q 008856 13 ALCKMEIGGCKKVVWRSA----TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 88 (551)
Q Consensus 13 ~L~~L~l~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 88 (551)
++++|+|+++....++.. +++|+.|++.+|... .++...+..+++|++|++++ +.++.+ +...|..++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~-N~l~~l---~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTG-NPIQSL---ALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTT-CCCCEE---CGGGGTTCT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccC-CcCCCC---CHHHhcCCC
Confidence 799999999987766542 677999999998644 46666677899999999999 578888 878889999
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-ccccccCCCCCCceEEEccCCCCcccCC--CC
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-KLPQSSFSLSSLREIEIFKCSSLVSFPE--VA 165 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~ 165 (551)
+|++|++++| +++.+++. .++.+ ++|++|++++|..-. ..|..+..+++|++|+++++ .++.+++ +.
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~----~~~~L----~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~ 194 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENF----PIGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLR 194 (635)
T ss_dssp TCCEEECTTS-CCCCSTTC----CCTTC----TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGH
T ss_pred CCCEEECCCC-cCCCCChh----hhhcC----cccCeeccccCccccCCCchhhccchhhhhhcccCc-ccccccccccc
Confidence 9999999996 58888763 36666 999999999964322 45677888999999999985 5554432 11
Q ss_pred CCC----CCcEEEccCCCCccccchhh-----------------------hhccCCCccEEEEe--cCCCcce-------
Q 008856 166 LPS----KLKKIQIGECDALKSLPEAW-----------------------MCDTNSSLEILSIH--GCRSLTY------- 209 (551)
Q Consensus 166 ~~~----~L~~L~l~~~~~l~~~~~~~-----------------------~~~~~~~L~~L~l~--~~~~~~~------- 209 (551)
.++ .+..++++.+. +..++... ...+...++...+. .......
T Consensus 195 ~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp HHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred chhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence 111 12233333321 11111100 00011222222111 0000000
Q ss_pred ------------------------ec-cccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCC
Q 008856 210 ------------------------IA-AVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSL 264 (551)
Q Consensus 210 ------------------------~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 264 (551)
.. ......+++.+.+.++. +..+ + .+.. ...++.|++.++. +
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~--~-~~~~--------~~~L~~L~l~~~~-~ 340 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERV--K-DFSY--------NFGWQHLELVNCK-F 340 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEEC--G-GGGS--------CCCCSEEEEESCE-E
T ss_pred ccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccc--c-cccc--------chhhhhhhccccc-c
Confidence 00 00112344444444321 1111 0 0111 1234444444421 1
Q ss_pred cccccCCCchhhhhhcccc----------CCCCCccEEEeccCcchh--hhHhhhcCCCCCcEEEEecCCCccccccccc
Q 008856 265 TCIFSKNELPATLESLEVG----------NLPPSLKSLRVRYCSKLE--SIAERLDNNTSLETISIYNCENLKILPSGLH 332 (551)
Q Consensus 265 ~~~~~~~~~~~~l~~l~~~----------~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 332 (551)
.. ++...++. +..+.+. .-.++|+.++++.|.... ..+..+..+.+|+.+++.. +.....+..+.
T Consensus 341 ~~-~~~~~l~~-L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~-~~~~~~~~~~~ 417 (635)
T 4g8a_A 341 GQ-FPTLKLKS-LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF-NGVITMSSNFL 417 (635)
T ss_dssp SS-CCCCBCTT-CCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS-CSEEEECSCCT
T ss_pred cC-cCcccchh-hhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccc-ccccccccccc
Confidence 11 11111100 1111100 001259999999886532 2344566788999999988 44555566677
Q ss_pred CCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEccCccccccccccccCCcccceeccc-c-ccccc-cC-CcCCCcc
Q 008856 333 KLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-A-LLSLE-ED-GLPTNLH 407 (551)
Q Consensus 333 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~-l~~l~-~~-~~~~~L~ 407 (551)
.+++|+.+++.+++.....+. ....+++++.++++++..-...+..+..+++|+.|++++ . ...+. .. ..+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 889999999988655544433 344556899999998654444556678889999999988 3 33333 22 4578999
Q ss_pred eeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhc
Q 008856 408 SLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSI 486 (551)
Q Consensus 408 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~ 486 (551)
+|++++|. +....+.. +.++++|++|++++|. +..++... +..+++|++|++++ |.+..++ ..+
T Consensus 498 ~L~Ls~N~-L~~l~~~~---f~~l~~L~~L~Ls~N~----l~~l~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l 562 (635)
T 4g8a_A 498 FLDLSQCQ-LEQLSPTA---FNSLSSLQVLNMSHNN----FFSLDTFP------YKCLNSLQVLDYSL-NHIMTSKKQEL 562 (635)
T ss_dssp EEECTTSC-CCEECTTT---TTTCTTCCEEECTTSC----CCBCCCGG------GTTCTTCCEEECTT-SCCCBCCSSCT
T ss_pred EEECCCCc-cCCcChHH---HcCCCCCCEEECCCCc----CCCCChhH------HhCCCCCCEEECCC-CcCCCCCHHHH
Confidence 99999997 44344443 7889999999999984 77776543 34678999999999 7888775 566
Q ss_pred cCC-CCcCEEEEcCCC
Q 008856 487 IDL-RNLTELVLRGCP 501 (551)
Q Consensus 487 ~~l-~~L~~L~l~~c~ 501 (551)
.++ ++|++|+++++|
T Consensus 563 ~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCCCTTCCEEECTTCC
T ss_pred HhhhCcCCEEEeeCCC
Confidence 677 689999998855
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=224.47 Aligned_cols=360 Identities=14% Similarity=0.119 Sum_probs=165.6
Q ss_pred ccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccch
Q 008856 27 WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVA 106 (551)
Q Consensus 27 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 106 (551)
++...++|++|++.++.... ++...+..+++|++|+++++.....+ +...+..+++|++|++++|. ++.+.+
T Consensus 25 lp~l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 96 (455)
T 3v47_A 25 VPELPAHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYNQ-FLQLET 96 (455)
T ss_dssp CCCCCTTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTCT-TCEECT
T ss_pred CCCCCCccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCCc-cCccCh
Confidence 44423456666666654332 22333445667777777764332233 44455666777777777643 555433
Q ss_pred hhhhhhhhhhhccCCCccEEecccCccccccccc--cCCCCCCceEEEccCCCCcccCC---CCCCCCCcEEEccCCCCc
Q 008856 107 EEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS--SFSLSSLREIEIFKCSSLVSFPE---VALPSKLKKIQIGECDAL 181 (551)
Q Consensus 107 ~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~--~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l 181 (551)
. ++..+ ++|++|++++|..-...+.. +..+++|++|+++++ .++.+.+ +..+++|++|++++|...
T Consensus 97 ~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 97 G----AFNGL----ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp T----TTTTC----TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred h----hccCc----ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCccc
Confidence 2 24545 67777777765332222322 566667777777664 3444422 345667777777665422
Q ss_pred cccchhhhhccCCCccEEEEecCCCcceeccc----------cCCCCccEEEEecCCCcccccccccccccCCCcccccC
Q 008856 182 KSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV----------QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSY 251 (551)
Q Consensus 182 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 251 (551)
...+..+......+++.|+++++. +..++.. ...++|+.|+++++.--... +..+.. .....
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~-----~~~~~ 239 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM--AKRFFD-----AIAGT 239 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH--HHHHHH-----HTTTC
T ss_pred ccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccc--hhhhhc-----ccccc
Confidence 222222211222456666666532 2222211 11245666666664322222 332222 01123
Q ss_pred CccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-ccc
Q 008856 252 LLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSG 330 (551)
Q Consensus 252 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~ 330 (551)
+|+.|+++++......+....++. .....+. -...++|+.|+++++ .+..+ +..
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~-----------------------~~~~~~L~~L~l~~n-~l~~~~~~~ 294 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKD-PDNFTFK-----------------------GLEASGVKTCDLSKS-KIFALLKSV 294 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCC-CCTTTTG-----------------------GGTTSCCCEEECCSS-CCCEECTTT
T ss_pred ceeeEeeccccccccccchhhhcc-Ccccccc-----------------------cccccCceEEEecCc-cccccchhh
Confidence 466666655432221111111110 0000000 001234555555552 22222 444
Q ss_pred ccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEEEccCcccccc-ccccccCCcccceeccc-cccccccC--CcCCC
Q 008856 331 LHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALEIYDCKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTN 405 (551)
Q Consensus 331 ~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~ 405 (551)
+..+++|++|++++|. +..+ +.....+++|+.|++++|. ++.+ +..+.++++|+.|++++ .+..++.. ..+++
T Consensus 295 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 4445555555555532 2222 2233333455555555532 3333 34455555555555555 44444221 33556
Q ss_pred cceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 406 LHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 406 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
|++|++++|... ...+.. +..+++|++|++++|
T Consensus 373 L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 373 LKELALDTNQLK-SVPDGI---FDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCEEECCSSCCS-CCCTTT---TTTCTTCCEEECCSS
T ss_pred ccEEECCCCccc-cCCHhH---hccCCcccEEEccCC
Confidence 666666666522 222221 456667777777766
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-24 Score=226.05 Aligned_cols=429 Identities=14% Similarity=0.086 Sum_probs=274.4
Q ss_pred CCCcceEEeCCCCCccccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcc
Q 008856 11 LPALCKMEIGGCKKVVWRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD 86 (551)
Q Consensus 11 ~~~L~~L~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 86 (551)
.++|++|++++|....++. .+++|+.|++.++... .++...+..+++|++|++++ +.++.+ +.. .
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~-N~l~~l---p~~---~ 119 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSH-NRLQNI---SCC---P 119 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC----EECTTTTTTCTTCCEEECTT-SCCCEE---CSC---C
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC----cCCHHHhCCCCCCCEEECCC-CcCCcc---Ccc---c
Confidence 3789999999998776553 3678999999998654 34444466799999999999 577877 654 7
Q ss_pred cCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCC--ceEEEccCCCC-cccCC
Q 008856 87 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSL--REIEIFKCSSL-VSFPE 163 (551)
Q Consensus 87 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L--~~L~l~~c~~l-~~~~~ 163 (551)
+++|++|++++| .++.++.. ..+..+ ++|++|+++++. +.. ..+..+++| ++|+++++... +...+
T Consensus 120 l~~L~~L~Ls~N-~l~~l~~p---~~~~~l----~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 120 MASLRHLDLSFN-DFDVLPVC---KEFGNL----TKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp CTTCSEEECCSS-CCSBCCCC---GGGGGC----TTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred cccCCEEECCCC-CccccCch---Hhhccc----CcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCc
Confidence 999999999996 48776532 237777 999999999964 333 245555666 99999986430 22221
Q ss_pred --CCCCC-CCcEEEccCCCCccccchhhhhccCCCccEEEEecCCC-ccee----ccccCCCCccEEEEecCCCccccc-
Q 008856 164 --VALPS-KLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRS-LTYI----AAVQLPSSLKMLTIWYCDNIRTLT- 234 (551)
Q Consensus 164 --~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~----~~~~~~~~L~~L~l~~~~~l~~l~- 234 (551)
+..++ ..-.++++++.....++.. .....++|+.++++++.. ...+ +.....++++.+++.++. +..-.
T Consensus 189 ~~l~~l~~~~l~l~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~ 266 (562)
T 3a79_B 189 ESLQIPNTTVLHLVFHPNSLFSVQVNM-SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCS 266 (562)
T ss_dssp CEEEECCEEEEEEEECSSSCCCCCCEE-EESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHH
T ss_pred ccccccCcceEEEEecCccchhhhhhh-cccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc-CcHHHH
Confidence 11111 1113455555433322221 112236788888887531 1111 111344677778777642 21100
Q ss_pred --ccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc--hhhhHhhhcCC
Q 008856 235 --VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK--LESIAERLDNN 310 (551)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~l 310 (551)
++... ...+|++|++++|.--.. +|...+.....+++ +|+.+++..+.. .......+...
T Consensus 267 ~~~~~~~---------~~~~L~~L~l~~n~l~~~-ip~~~~~~~~~~L~------~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 267 VKLFQFF---------WPRPVEYLNIYNLTITER-IDREEFTYSETALK------SLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp HHHHHHH---------TTSSEEEEEEEEEEECSC-CCCCCCCCCSCSCC------EEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred HHHHHhh---------hcccccEEEEeccEeecc-ccchhhhcccccch------heehhhcccceeecChhhhhhhhcc
Confidence 01111 123688999888542212 33322111001111 244444444432 00111111123
Q ss_pred CCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccc---ccccccCCcccc
Q 008856 311 TSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKAL---PKGLHNLSTLQD 387 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~---~~~~~~l~~L~~ 387 (551)
.+|++|+++++ .+..++ ....+++|++|++++|.-....+.....+++|+.|+++++ .++.+ |..+.++++|+.
T Consensus 331 ~~L~~L~l~~n-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDT-PFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESS-CCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCC-Cccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCE
Confidence 67999999994 444332 1257889999999996544445655566779999999985 45544 456889999999
Q ss_pred eeccc-cccc-cccC--CcCCCcceeEecCCchhhhhhhhhccccccC-CCccEEEEeccCCCCcccccccccccccccc
Q 008856 388 LTIGG-ALLS-LEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRF-SSLRHLTIDGCDDDTMMVSFPLEDKRLGTVL 462 (551)
Q Consensus 388 L~l~~-~l~~-l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 462 (551)
|++++ .+.. ++.. ..+++|++|++++|...... +..+ ++|++|++++|. +..+|...
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~l~~~L~~L~L~~N~----l~~ip~~~------- 469 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-------FRCLPPKVKVLDLHNNR----IMSIPKDV------- 469 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-------GSSCCTTCSEEECCSSC----CCCCCTTT-------
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-------hhhhcCcCCEEECCCCc----CcccChhh-------
Confidence 99998 6665 6653 45789999999999843322 2344 699999999994 77888755
Q ss_pred cccccccccccccCCChhhhhhh-ccCCCCcCEEEEcCCC
Q 008856 463 RLPTTLTSLRIEDFPNLERLSSS-IIDLRNLTELVLRGCP 501 (551)
Q Consensus 463 ~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~ 501 (551)
..+++|++|++++ +.++.+|.. +..+++|++|++++++
T Consensus 470 ~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 470 THLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred cCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 2578999999999 789999866 8889999999999965
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=221.84 Aligned_cols=369 Identities=25% Similarity=0.273 Sum_probs=227.8
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhc---------cCCCccEEecc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQ---------LSCRLEYLILS 129 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~---------~~~~L~~L~L~ 129 (551)
..+|++|++++ +.+..+ |.. ++.+++|++|++++|.-...+|.. ++.+.. ...++++|+++
T Consensus 10 ~~~L~~L~l~~-n~l~~i---P~~-i~~L~~L~~L~l~~n~~~~~~p~~-----~~~l~~L~~l~l~~c~~~~l~~L~l~ 79 (454)
T 1jl5_A 10 NTFLQEPLRHS-SNLTEM---PVE-AENVKSKTEYYNAWSEWERNAPPG-----NGEQREMAVSRLRDCLDRQAHELELN 79 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTT-----SCCCHHHHHHHHHHHHHHTCSEEECT
T ss_pred cccchhhhccc-CchhhC---Chh-HhcccchhhhhccCCcccccCCcc-----cccchhcchhhhhhhhccCCCEEEec
Confidence 35666666666 345555 443 466666666666664322233332 222200 01356888888
Q ss_pred cCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcce
Q 008856 130 YCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTY 209 (551)
Q Consensus 130 ~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 209 (551)
+| .+..+|.. .++|++|++++ +.++.++. .+++|++|++++|. +..++.. .++|++|++++| .++.
T Consensus 80 ~~-~l~~lp~~---~~~L~~L~l~~-n~l~~lp~--~~~~L~~L~l~~n~-l~~l~~~-----~~~L~~L~L~~n-~l~~ 145 (454)
T 1jl5_A 80 NL-GLSSLPEL---PPHLESLVASC-NSLTELPE--LPQSLKSLLVDNNN-LKALSDL-----PPLLEYLGVSNN-QLEK 145 (454)
T ss_dssp TS-CCSCCCSC---CTTCSEEECCS-SCCSSCCC--CCTTCCEEECCSSC-CSCCCSC-----CTTCCEEECCSS-CCSS
T ss_pred CC-ccccCCCC---cCCCCEEEccC-CcCCcccc--ccCCCcEEECCCCc-cCcccCC-----CCCCCEEECcCC-CCCC
Confidence 85 45666642 46788888887 45666664 34788888888854 4444332 157888888885 4555
Q ss_pred eccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccC-CCchhhhhhccccCCCCC
Q 008856 210 IAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSK-NELPATLESLEVGNLPPS 288 (551)
Q Consensus 210 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~l~~l~~~~~~~~ 288 (551)
++....+++|++|+++++ .++.+ |.... +|++|+++++ .++. ++. ..++ +
T Consensus 146 lp~~~~l~~L~~L~l~~N-~l~~l--p~~~~-----------~L~~L~L~~n-~l~~-l~~~~~l~-------------~ 196 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNN-SLKKL--PDLPP-----------SLEFIAAGNN-QLEE-LPELQNLP-------------F 196 (454)
T ss_dssp CCCCTTCTTCCEEECCSS-CCSCC--CCCCT-----------TCCEEECCSS-CCSS-CCCCTTCT-------------T
T ss_pred CcccCCCCCCCEEECCCC-cCccc--CCCcc-----------cccEEECcCC-cCCc-CccccCCC-------------C
Confidence 665566788999999885 56655 55443 4999999884 4554 321 2222 5
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
|++|++++|.... ++. ..++|++|++++ +.+..+| .+..+++|++|++++| .++.++.. +++|+.|++++
T Consensus 197 L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~-n~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~ 266 (454)
T 1jl5_A 197 LTAIYADNNSLKK-LPD---LPLSLESIVAGN-NILEELP-ELQNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRD 266 (454)
T ss_dssp CCEEECCSSCCSS-CCC---CCTTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCS
T ss_pred CCEEECCCCcCCc-CCC---CcCcccEEECcC-CcCCccc-ccCCCCCCCEEECCCC-cCCccccc---ccccCEEECCC
Confidence 9999999986432 322 236899999999 4677887 4888999999999994 66666653 35999999998
Q ss_pred CccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccC-CCccEEEEeccCCCC
Q 008856 369 CKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRF-SSLRHLTIDGCDDDT 446 (551)
Q Consensus 369 c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~ 446 (551)
| .++.+|.. .++|+.|++++ .+..++. .+++|++|++++|.... +..+ ++|++|++++|.
T Consensus 267 N-~l~~l~~~---~~~L~~L~ls~N~l~~l~~--~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~Ls~N~--- 328 (454)
T 1jl5_A 267 N-YLTDLPEL---PQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRS---------LCDLPPSLEELNVSNNK--- 328 (454)
T ss_dssp S-CCSCCCCC---CTTCCEEECCSSCCSEESC--CCTTCCEEECCSSCCSE---------ECCCCTTCCEEECCSSC---
T ss_pred C-cccccCcc---cCcCCEEECcCCccCcccC--cCCcCCEEECcCCcCCc---------ccCCcCcCCEEECCCCc---
Confidence 5 46667654 37899999998 7766654 34799999999997332 2334 599999999984
Q ss_pred cccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCcccc---CCCC-C-----------
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYF---PEKG-L----------- 511 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l---~~~~-~----------- 511 (551)
+..+|. .+++|++|++++ +.++.+|. .+++|++|++++| .++.+ |... -
T Consensus 329 -l~~lp~----------~~~~L~~L~L~~-N~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 329 -LIELPA----------LPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVP 392 (454)
T ss_dssp -CSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC------
T ss_pred -cccccc----------cCCcCCEEECCC-Cccccccc---hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccc
Confidence 677776 358999999999 68888886 5799999999995 56553 3311 1
Q ss_pred --ccccceEeecCCc
Q 008856 512 --PSSLLELWISGCP 524 (551)
Q Consensus 512 --~~~L~~L~i~~c~ 524 (551)
+++|+.|++++++
T Consensus 393 ~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 393 ELPQNLKQLHVETNP 407 (454)
T ss_dssp ---------------
T ss_pred cccCcCCEEECCCCc
Confidence 2678999998875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=210.88 Aligned_cols=311 Identities=17% Similarity=0.230 Sum_probs=229.1
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL- 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~- 137 (551)
++++++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|++++|. +..+
T Consensus 44 l~~l~~l~l~~-~~l~~l---~~~~~~~l~~L~~L~L~~n-~i~~~~~~----~~~~l----~~L~~L~L~~n~-l~~~~ 109 (390)
T 3o6n_A 44 LNNQKIVTFKN-STMRKL---PAALLDSFRQVELLNLNDL-QIEEIDTY----AFAYA----HTIQKLYMGFNA-IRYLP 109 (390)
T ss_dssp GCCCSEEEEES-CEESEE---CTHHHHHCCCCSEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSC-CCCCC
T ss_pred cCCceEEEecC-CchhhC---ChhHhcccccCcEEECCCC-cccccChh----hccCC----CCcCEEECCCCC-CCcCC
Confidence 68889999988 567777 7777788899999999986 47777663 35656 889999998864 4444
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
+..+..+++|++|+++++ .++.++. +..+++|++|++++|. +..++...+ ..+++|+.|+++++. ++.++ ...
T Consensus 110 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~ 184 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 184 (390)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCC-GGG
T ss_pred HHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCccc-ccc
Confidence 455788899999999885 6777776 4668899999998865 444443211 334789999998853 44443 345
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
+++|+.++++++ .++.+.. .++|++|++++ +.+.. ++....+ +|++|+++
T Consensus 185 l~~L~~L~l~~n-~l~~~~~--------------~~~L~~L~l~~-n~l~~-~~~~~~~-------------~L~~L~l~ 234 (390)
T 3o6n_A 185 IPSLFHANVSYN-LLSTLAI--------------PIAVEELDASH-NSINV-VRGPVNV-------------ELTILKLQ 234 (390)
T ss_dssp CTTCSEEECCSS-CCSEEEC--------------CSSCSEEECCS-SCCCE-EECCCCS-------------SCCEEECC
T ss_pred ccccceeecccc-cccccCC--------------CCcceEEECCC-Ceeee-ccccccc-------------cccEEECC
Confidence 678899988874 4544411 23589999988 45555 4443333 59999999
Q ss_pred cCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc
Q 008856 296 YCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA 374 (551)
Q Consensus 296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 374 (551)
+|..... ..+..+++|++|++++ +.+..+ |..+..+++|++|++++ +.++.++.....+++|+.|++++| .++.
T Consensus 235 ~n~l~~~--~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 235 HNNLTDT--AWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCC
T ss_pred CCCCccc--HHHcCCCCccEEECCC-CcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-ccee
Confidence 9865442 4678899999999999 556655 77888899999999999 467777766666779999999995 5778
Q ss_pred cccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhh
Q 008856 375 LPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEW 424 (551)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 424 (551)
+|..+..+++|+.|++++ .+..++ ...+++|++|++++|+.-.+....+
T Consensus 310 ~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred cCccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCCCccchhHHHH
Confidence 888888899999999988 777665 4457889999999988555444333
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=207.56 Aligned_cols=145 Identities=14% Similarity=0.282 Sum_probs=78.6
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
+++|++|++++ +.+..+ + .+..+++|++|++++| .++.+++ +..+ ++|++|++++| .+..++
T Consensus 43 l~~L~~L~l~~-~~i~~~---~--~~~~~~~L~~L~l~~n-~i~~~~~------~~~l----~~L~~L~L~~n-~i~~~~ 104 (347)
T 4fmz_A 43 LESITKLVVAG-EKVASI---Q--GIEYLTNLEYLNLNGN-QITDISP------LSNL----VKLTNLYIGTN-KITDIS 104 (347)
T ss_dssp HTTCSEEECCS-SCCCCC---T--TGGGCTTCCEEECCSS-CCCCCGG------GTTC----TTCCEEECCSS-CCCCCG
T ss_pred cccccEEEEeC-Cccccc---h--hhhhcCCccEEEccCC-ccccchh------hhcC----CcCCEEEccCC-cccCch
Confidence 56666666666 344433 2 2456666666666664 3555433 3333 66666666664 334443
Q ss_pred cccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCC
Q 008856 139 QSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSS 218 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 218 (551)
.+..+++|++|+++++ .++.++.+..+++|++|++++|.....++.. ..+++|++|++++|. +..++....+++
T Consensus 105 -~~~~l~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~l~~L~~L~l~~~~-~~~~~~~~~l~~ 178 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLSDLSPL---SNMTGLNYLTVTESK-VKDVTPIANLTD 178 (347)
T ss_dssp -GGTTCTTCSEEECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGGG---TTCTTCCEEECCSSC-CCCCGGGGGCTT
T ss_pred -HHcCCCcCCEEECcCC-cccCchhhccCCceeEEECCCCCCcccccch---hhCCCCcEEEecCCC-cCCchhhccCCC
Confidence 4566666666666663 4555555555666666666666555444432 333556666666542 333333334455
Q ss_pred ccEEEEecC
Q 008856 219 LKMLTIWYC 227 (551)
Q Consensus 219 L~~L~l~~~ 227 (551)
|+.|+++++
T Consensus 179 L~~L~l~~n 187 (347)
T 4fmz_A 179 LYSLSLNYN 187 (347)
T ss_dssp CSEEECTTS
T ss_pred CCEEEccCC
Confidence 555555553
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=214.75 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=40.2
Q ss_pred CCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEE
Q 008856 121 CRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILS 200 (551)
Q Consensus 121 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 200 (551)
++|++|++++| .+..++ +..+++|++|+++++ .++.++ ++.+++|++|++++|..+..++. ..+++|+.|+
T Consensus 106 ~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~----~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLDV----TPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCCC----TTCTTCCEEE
T ss_pred CcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccccccc----ccCCcCCEEE
Confidence 44555555443 223332 444445555555442 333332 34444555555554433333311 1224455555
Q ss_pred EecCCCcceeccccCCCCccEEEEec
Q 008856 201 IHGCRSLTYIAAVQLPSSLKMLTIWY 226 (551)
Q Consensus 201 l~~~~~~~~~~~~~~~~~L~~L~l~~ 226 (551)
+++| .++.++ ...+++|+.|++++
T Consensus 177 ls~n-~l~~l~-l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 177 CSFN-KITELD-VSQNKLLNRLNCDT 200 (457)
T ss_dssp CCSS-CCCCCC-CTTCTTCCEEECCS
T ss_pred CCCC-ccceec-cccCCCCCEEECcC
Confidence 5443 233333 23334555555554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=205.55 Aligned_cols=124 Identities=16% Similarity=0.243 Sum_probs=71.1
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCC
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEV 164 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 164 (551)
..+++|++|+++++ .+..++. +..+ ++|++|++++| .+..++. +..+++|++|++++| .++.++.+
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~------~~~~----~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG------IEYL----TNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT------GGGC----TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchh------hhhc----CCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 46677777777774 3655532 4444 77777777775 4455554 667777777777774 55556556
Q ss_pred CCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEec
Q 008856 165 ALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWY 226 (551)
Q Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 226 (551)
..+++|++|++++|. +..++.. ..+++|+.|++++|.....++....+++|+.|++++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGGG---TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS
T ss_pred cCCCcCCEEECcCCc-ccCchhh---ccCCceeEEECCCCCCcccccchhhCCCCcEEEecC
Confidence 667777777776644 4443332 233555555555554444433333334444444443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=216.05 Aligned_cols=366 Identities=15% Similarity=0.161 Sum_probs=197.6
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++.-...+++. .+..+ ++|++|++++|......|.
T Consensus 30 ~~l~~L~Ls~-n~i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSL-NSIAEL---NETSFSRLQDLQFLKVEQQTPGLVIRNN----TFRGL----SSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp TTCCEEECCS-SCCCEE---CTTTTSSCTTCCEEECCCCSTTCEECTT----TTTTC----TTCCEEECTTCTTCEECTT
T ss_pred CccCEEEecC-CccCcC---ChhHhccCccccEEECcCCcccceECcc----ccccc----ccCCEEeCCCCccCccChh
Confidence 6788888888 456655 5566778888888888886422344442 35555 7888888888654334466
Q ss_pred ccCCCCCCceEEEccCCCCcc--cCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 140 SSFSLSSLREIEIFKCSSLVS--FPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 140 ~~~~l~~L~~L~l~~c~~l~~--~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
.+..+++|++|++++| .++. ... +..+++|++|++++|. +..+........+++|++|++++|. ++.+.
T Consensus 98 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~---- 170 (455)
T 3v47_A 98 AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VKSIC---- 170 (455)
T ss_dssp TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BSCCC----
T ss_pred hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-ccccC----
Confidence 7778888888888875 3432 222 5567778888887765 3333221111234666666666643 22221
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
+..+.. +...+++.|+++++ .+.. ++...+..... -.+.. .++|++|+++
T Consensus 171 --------------------~~~l~~------l~~~~L~~L~l~~n-~l~~-~~~~~~~~~~~-~~~~~-~~~L~~L~Ls 220 (455)
T 3v47_A 171 --------------------EEDLLN------FQGKHFTLLRLSSI-TLQD-MNEYWLGWEKC-GNPFK-NTSITTLDLS 220 (455)
T ss_dssp --------------------TTTSGG------GTTCEEEEEECTTC-BCTT-CSTTCTTHHHH-CCTTT-TCEEEEEECT
T ss_pred --------------------hhhhhc------cccccccccccccC-cccc-cchhhcccccc-ccccc-cceeeeEecC
Confidence 111111 11123455555442 2222 11111000000 00000 0148888888
Q ss_pred cCcchhhhHhhhcC---CCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccc
Q 008856 296 YCSKLESIAERLDN---NTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRL 372 (551)
Q Consensus 296 ~~~~~~~~~~~~~~---l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 372 (551)
+|......+..+.. .++|+.|+++++...... .....++.+.. ........++|+.|++++|...
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-FGHTNFKDPDN-----------FTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-TTCCSSCCCCT-----------TTTGGGTTSCCCEEECCSSCCC
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccc-cchhhhccCcc-----------cccccccccCceEEEecCcccc
Confidence 88665555544432 367778877775332211 00111111110 0001111236667777665433
Q ss_pred cccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccc
Q 008856 373 KALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMV 449 (551)
Q Consensus 373 ~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 449 (551)
...|..+.++++|+.|++++ .+..++.. ..+++|++|++++|.. ....+.. +..+++|++|++++|. +.
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~Ls~N~----l~ 360 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRM---FENLDKLEVLDLSYNH----IR 360 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGG---GTTCTTCCEEECCSSC----CC
T ss_pred ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcChhH---hcCcccCCEEECCCCc----cc
Confidence 33455566677777777766 55554432 3456777777777763 2222222 5677788888888773 55
Q ss_pred ccccccccccccccccccccccccccCCChhhhhh-hccCCCCcCEEEEcCCC
Q 008856 450 SFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS-SIIDLRNLTELVLRGCP 501 (551)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~ 501 (551)
.++... +..+++|++|++++ +.++.+|. .+..+++|++|++++|+
T Consensus 361 ~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 361 ALGDQS------FLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccChhh------ccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 553321 23457788888887 67777763 45677888888888754
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=214.13 Aligned_cols=311 Identities=17% Similarity=0.229 Sum_probs=233.6
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL- 137 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~- 137 (551)
+++++.+++++ +.+..+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|+|++|. +..+
T Consensus 50 l~~l~~l~l~~-~~l~~l---p~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~L~~n~-l~~~~ 115 (597)
T 3oja_B 50 LNNQKIVTFKN-STMRKL---PAALLDSFRQVELLNLNDL-QIEEIDTY----AFAYA----HTIQKLYMGFNA-IRYLP 115 (597)
T ss_dssp GCCCSEEEESS-CEESEE---CTHHHHHCCCCSEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSSC-CCCCC
T ss_pred CCCceEEEeeC-CCCCCc---CHHHHccCCCCcEEECCCC-CCCCCChH----HhcCC----CCCCEEECCCCc-CCCCC
Confidence 57889999988 567777 7777888999999999986 47777663 35666 899999999865 4544
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
+..+..+++|++|+++++ .++.+++ ++.+++|++|++++|. +..++...+ ..+++|+.|++++|. ++.++ ...
T Consensus 116 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~ 190 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 190 (597)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCC-GGG
T ss_pred HHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcC-hhh
Confidence 445688999999999985 6777776 4678999999999875 444443222 234889999998853 44443 345
Q ss_pred CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEec
Q 008856 216 PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVR 295 (551)
Q Consensus 216 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~ 295 (551)
+++|+.|+++++ .+..+.+ ..+|+.|++++ +.+.. ++....+ +|+.|+++
T Consensus 191 l~~L~~L~l~~n-~l~~l~~--------------~~~L~~L~ls~-n~l~~-~~~~~~~-------------~L~~L~L~ 240 (597)
T 3oja_B 191 IPSLFHANVSYN-LLSTLAI--------------PIAVEELDASH-NSINV-VRGPVNV-------------ELTILKLQ 240 (597)
T ss_dssp CTTCSEEECCSS-CCSEEEC--------------CTTCSEEECCS-SCCCE-EECSCCS-------------CCCEEECC
T ss_pred hhhhhhhhcccC-ccccccC--------------CchhheeeccC-Ccccc-cccccCC-------------CCCEEECC
Confidence 678999998874 4544411 33599999988 44554 3333322 59999999
Q ss_pred cCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc
Q 008856 296 YCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA 374 (551)
Q Consensus 296 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 374 (551)
+|.... +..+..+++|+.|++++ +.+..+ |..+..+++|++|++++ +.+..++.....+++|+.|++++| .++.
T Consensus 241 ~n~l~~--~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~ 315 (597)
T 3oja_B 241 HNNLTD--TAWLLNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLH 315 (597)
T ss_dssp SSCCCC--CGGGGGCTTCSEEECCS-SCCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCC
T ss_pred CCCCCC--ChhhccCCCCCEEECCC-CccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCc
Confidence 996544 35678899999999999 556655 77888999999999999 467777776667789999999995 5778
Q ss_pred cccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhh
Q 008856 375 LPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEW 424 (551)
Q Consensus 375 ~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 424 (551)
+|..+..+++|+.|++++ .+..++ ...+++|++|++++|+........+
T Consensus 316 i~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred cCcccccCCCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCCCCChhHHHH
Confidence 888889999999999999 777665 4467899999999999655544444
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=206.07 Aligned_cols=256 Identities=19% Similarity=0.208 Sum_probs=165.3
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
.+++|++|++++ +.++.+ + .+..+++|++|++++| .++.++ +..+ ++|++|++++| .+..+
T Consensus 40 ~l~~L~~L~Ls~-n~l~~~---~--~l~~l~~L~~L~Ls~n-~l~~~~-------~~~l----~~L~~L~Ls~N-~l~~~ 100 (457)
T 3bz5_A 40 QLATLTSLDCHN-SSITDM---T--GIEKLTGLTKLICTSN-NITTLD-------LSQN----TNLTYLACDSN-KLTNL 100 (457)
T ss_dssp HHTTCCEEECCS-SCCCCC---T--TGGGCTTCSEEECCSS-CCSCCC-------CTTC----TTCSEEECCSS-CCSCC
T ss_pred HcCCCCEEEccC-CCcccC---h--hhcccCCCCEEEccCC-cCCeEc-------cccC----CCCCEEECcCC-CCcee
Confidence 478888888888 466654 4 3678888888888886 476653 3444 88888888885 45555
Q ss_pred ccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPS 217 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 217 (551)
+ +..+++|++|+++++ .++.++ ++.+++|++|++++|. ++.++ . ..+++|+.|++++|..+..++ ...++
T Consensus 101 ~--~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~-l~~l~-l---~~l~~L~~L~l~~n~~~~~~~-~~~l~ 170 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNT-LTEID-V---SHNTQLTELDCHLNKKITKLD-VTPQT 170 (457)
T ss_dssp C--CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTSC-CSCCC-C---TTCTTCCEEECTTCSCCCCCC-CTTCT
T ss_pred e--cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCCc-cceec-c---ccCCcCCEEECCCCCcccccc-cccCC
Confidence 4 778888888888884 566665 6778888888888764 44443 1 234778888888776555552 34456
Q ss_pred CccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccC
Q 008856 218 SLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYC 297 (551)
Q Consensus 218 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~ 297 (551)
+|+.|+++++ .++.+ | +.. +++|+.|++++ +.++. ++...++. |++|++++|
T Consensus 171 ~L~~L~ls~n-~l~~l--~--l~~--------l~~L~~L~l~~-N~l~~-~~l~~l~~-------------L~~L~Ls~N 222 (457)
T 3bz5_A 171 QLTTLDCSFN-KITEL--D--VSQ--------NKLLNRLNCDT-NNITK-LDLNQNIQ-------------LTFLDCSSN 222 (457)
T ss_dssp TCCEEECCSS-CCCCC--C--CTT--------CTTCCEEECCS-SCCSC-CCCTTCTT-------------CSEEECCSS
T ss_pred cCCEEECCCC-cccee--c--ccc--------CCCCCEEECcC-CcCCe-eccccCCC-------------CCEEECcCC
Confidence 7777777774 55554 3 333 45677777776 34444 33333333 777777777
Q ss_pred cchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccccc
Q 008856 298 SKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPK 377 (551)
Q Consensus 298 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~ 377 (551)
.... ++ +..+++|+.|++++ +.+..++ +..+++|+.|+++++ +|+.|++++|.....+|
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~-N~l~~~~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSV-NPLTELD--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCS-SCCSCCC--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-
T ss_pred cccc-cC--ccccCCCCEEEeeC-CcCCCcC--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-
Confidence 5433 33 56667777777777 4455553 345666666666553 45666666666555554
Q ss_pred ccccCCcccceeccc
Q 008856 378 GLHNLSTLQDLTIGG 392 (551)
Q Consensus 378 ~~~~l~~L~~L~l~~ 392 (551)
+..+++|+.|++++
T Consensus 282 -~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 282 -AEGCRKIKELDVTH 295 (457)
T ss_dssp -CTTCTTCCCCCCTT
T ss_pred -ccccccCCEEECCC
Confidence 35667777777766
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=204.84 Aligned_cols=302 Identities=16% Similarity=0.147 Sum_probs=209.0
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+.+++.|++.++... .+|..++..+++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+++.
T Consensus 44 l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~--- 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLND-LQIEEI---DTYAFAYAHTIQKLYMGFN-AIRYLPPH--- 111 (390)
T ss_dssp GCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTT-SCCCEE---CTTTTTTCTTCCEEECCSS-CCCCCCTT---
T ss_pred cCCceEEEecCCchh----hCChhHhcccccCcEEECCC-Cccccc---ChhhccCCCCcCEEECCCC-CCCcCCHH---
Confidence 566777777776533 34554445578888888888 456666 6556777888888888885 47766653
Q ss_pred hhhhhhhccCCCccEEecccCccccccccc-cCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGLVKLPQS-SFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEA 187 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~ 187 (551)
.+..+ ++|++|++++| .+..+|.. +..+++|++|+++++ .++.+++ +..+++|++|++++|. +..++.
T Consensus 112 -~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~- 182 (390)
T 3o6n_A 112 -VFQNV----PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVDL- 182 (390)
T ss_dssp -TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG-
T ss_pred -HhcCC----CCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc-CCcccc-
Confidence 25555 78888888875 45666655 477888888888874 4555544 5667888888888754 444432
Q ss_pred hhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCccc
Q 008856 188 WMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI 267 (551)
Q Consensus 188 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 267 (551)
..+++|+.|+++++ .++.+ ..+++|+.|+++++ .+..+ +... .++|+.|+++++ .++..
T Consensus 183 ---~~l~~L~~L~l~~n-~l~~~---~~~~~L~~L~l~~n-~l~~~--~~~~----------~~~L~~L~l~~n-~l~~~ 241 (390)
T 3o6n_A 183 ---SLIPSLFHANVSYN-LLSTL---AIPIAVEELDASHN-SINVV--RGPV----------NVELTILKLQHN-NLTDT 241 (390)
T ss_dssp ---GGCTTCSEEECCSS-CCSEE---ECCSSCSEEECCSS-CCCEE--ECCC----------CSSCCEEECCSS-CCCCC
T ss_pred ---ccccccceeecccc-ccccc---CCCCcceEEECCCC-eeeec--cccc----------cccccEEECCCC-CCccc
Confidence 23477888888874 33333 34567888888874 55555 4432 236888888884 44441
Q ss_pred ccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCC
Q 008856 268 FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGN 347 (551)
Q Consensus 268 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 347 (551)
-....++ +|++|++++|......+..+..+++|+.|++++ +.+..++.....+++|++|++++| .
T Consensus 242 ~~l~~l~-------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~ 306 (390)
T 3o6n_A 242 AWLLNYP-------------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-H 306 (390)
T ss_dssp GGGGGCT-------------TCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-C
T ss_pred HHHcCCC-------------CccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-c
Confidence 1111222 599999999876666677888899999999998 667777777778899999999995 5
Q ss_pred CccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc
Q 008856 348 LVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 348 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~ 392 (551)
+..++.....+++|+.|++++|. ++.++ +..+++|+.|++++
T Consensus 307 l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 307 LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCS
T ss_pred ceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCC
Confidence 66666544445689999999854 66664 67788999999988
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=222.64 Aligned_cols=300 Identities=12% Similarity=0.104 Sum_probs=156.1
Q ss_pred ccccceeeeccccCcccceeccCCc-----------CCCCCCccEEEecCCCCchhhcccCcchhcc-cCC-ccEEeecC
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPL-----------KPRIPKLEELKINNIQNETCIWKSHNELLQD-ICS-LKRLTITS 97 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-l~~-L~~L~l~~ 97 (551)
+++|+.|++.+|+...+....|... ...+++|++|++++| .+++. ....+.. +++ |++|++++
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~---~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDL---DLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHH---HHHHHHHHHGGGCCEEEEES
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHH---HHHHHHHhccccCcEEECcC
Confidence 5666666666665543222222111 125788888888886 44433 2222333 455 88888888
Q ss_pred CccccccchhhhhhhhhhhhccCCCccEEecccCccccc----cccccCCCCCCceEEEccCCCCc-----ccCC-CCCC
Q 008856 98 CPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK----LPQSSFSLSSLREIEIFKCSSLV-----SFPE-VALP 167 (551)
Q Consensus 98 ~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~----~~~~~~~l~~L~~L~l~~c~~l~-----~~~~-~~~~ 167 (551)
|..+.. .++..+...+++|++|++++|..... ++.....+++|++|+++++ .++ .++. +..+
T Consensus 148 ~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 148 CSGFTT-------DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNC 219 (592)
T ss_dssp CEEEEH-------HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHC
T ss_pred CCCcCH-------HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhC
Confidence 764332 22333333448888888888743221 2233456788888888774 333 2222 3457
Q ss_pred CCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcce----eccccCCCCccEEEEecCCCcccccccccccccC
Q 008856 168 SKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTY----IAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSS 243 (551)
Q Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 243 (551)
++|++|++++|. +..++..+ ...++|+.|+++++..... ......+++|+.+.++++ ....+ +..+..
T Consensus 220 ~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l--~~~~~~-- 291 (592)
T 3ogk_B 220 RSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEM--PILFPF-- 291 (592)
T ss_dssp TTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTG--GGGGGG--
T ss_pred CCCcEEeccCcc-HHHHHHHH--hhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHH--HHHHhh--
Confidence 888888888865 44444332 2347788888875332211 111144567777777653 22222 443333
Q ss_pred CCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEec---
Q 008856 244 SSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYN--- 320 (551)
Q Consensus 244 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--- 320 (551)
+++|++|++++|. ++. .. ++..+.+ .++|++|+++++.....+......+++|++|++++
T Consensus 292 ------~~~L~~L~Ls~~~-l~~-~~---~~~~~~~------~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 292 ------AAQIRKLDLLYAL-LET-ED---HCTLIQK------CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354 (592)
T ss_dssp ------GGGCCEEEETTCC-CCH-HH---HHHHHTT------CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCC
T ss_pred ------cCCCcEEecCCCc-CCH-HH---HHHHHHh------CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcc
Confidence 4567777777765 332 11 1110111 11477777764322233334445667777777773
Q ss_pred -------CCCcccc--cccccCCCCcceEEecCCCCCccC--CCCCCCCCCccEEEEcc
Q 008856 321 -------CENLKIL--PSGLHKLHQLREISIGSCGNLVSF--PGGGLPCAKLTALEIYD 368 (551)
Q Consensus 321 -------~~~l~~~--~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~ 368 (551)
|+.+... +.....+++|++|+++. +.++.- ......+++|+.|++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp SSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred ccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEee
Confidence 5555432 22233466777777733 333321 00111134666666663
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-21 Score=199.99 Aligned_cols=293 Identities=20% Similarity=0.238 Sum_probs=136.5
Q ss_pred cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhh
Q 008856 32 DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKD 111 (551)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 111 (551)
.+++.|++.++.... ++...+..+++|++|++++ +.++.+ ....+..+++|++|+++++ .++.++..
T Consensus 32 ~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~---- 98 (477)
T 2id5_A 32 TETRLLDLGKNRIKT----LNQDEFASFPHLEELELNE-NIVSAV---EPGAFNNLFNLRTLGLRSN-RLKLIPLG---- 98 (477)
T ss_dssp TTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTT-SCCCEE---CTTTTTTCTTCCEEECCSS-CCCSCCTT----
T ss_pred CCCcEEECCCCccce----ECHhHccCCCCCCEEECCC-CccCEe---ChhhhhCCccCCEEECCCC-cCCccCcc----
Confidence 345555555544322 2223334455666666655 344444 3444555566666666553 35555442
Q ss_pred hhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhh
Q 008856 112 QQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWM 189 (551)
Q Consensus 112 ~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (551)
.+..+ ++|++|++++|......+..+..+++|++|+++++ .+..+.+ +..+++|++|++++|. +..++...+
T Consensus 99 ~~~~l----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l 172 (477)
T 2id5_A 99 VFTGL----SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEAL 172 (477)
T ss_dssp SSTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHH
T ss_pred cccCC----CCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCc-CcccChhHh
Confidence 13333 55666666554332233444555556666666553 3333332 3445555555555543 333332211
Q ss_pred hccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCccccc
Q 008856 190 CDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFS 269 (551)
Q Consensus 190 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 269 (551)
..+++|+.|+++++. +..++.. .+.. +++|++|++++|+.+.. ++
T Consensus 173 -~~l~~L~~L~l~~n~-i~~~~~~------------------------~~~~--------l~~L~~L~l~~~~~~~~-~~ 217 (477)
T 2id5_A 173 -SHLHGLIVLRLRHLN-INAIRDY------------------------SFKR--------LYRLKVLEISHWPYLDT-MT 217 (477)
T ss_dssp -TTCTTCCEEEEESCC-CCEECTT------------------------CSCS--------CTTCCEEEEECCTTCCE-EC
T ss_pred -cccCCCcEEeCCCCc-CcEeChh------------------------hccc--------CcccceeeCCCCccccc-cC
Confidence 122455555555432 2222221 2222 33455555555444433 22
Q ss_pred CCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCC
Q 008856 270 KNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNL 348 (551)
Q Consensus 270 ~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l 348 (551)
...+.. .+|++|++++|.........+..+++|+.|++++ +.+..+ +..+..+++|++|++++| .+
T Consensus 218 ~~~~~~-----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l 284 (477)
T 2id5_A 218 PNCLYG-----------LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QL 284 (477)
T ss_dssp TTTTTT-----------CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSS-CC
T ss_pred cccccC-----------ccccEEECcCCcccccCHHHhcCccccCeeECCC-CcCCccChhhccccccCCEEECCCC-cc
Confidence 211111 1355555555543322233455566666666665 334444 334455566666666663 33
Q ss_pred ccC-CCCCCCCCCccEEEEccCcccccccc-ccccCCcccceeccc
Q 008856 349 VSF-PGGGLPCAKLTALEIYDCKRLKALPK-GLHNLSTLQDLTIGG 392 (551)
Q Consensus 349 ~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~l~~L~~L~l~~ 392 (551)
..+ +.....+++|+.|++++| .++.++. .+..+++|+.|++++
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred ceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence 332 333334456666666653 3444432 345566666666655
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=205.31 Aligned_cols=302 Identities=16% Similarity=0.147 Sum_probs=198.0
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+.+++.+++.++... .+|..++..+++|++|++++ +.++.+ +...+..+++|++|++++| .++.+++.
T Consensus 50 l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~-n~l~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~--- 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLND-LQIEEI---DTYAFAYAHTIQKLYMGFN-AIRYLPPH--- 117 (597)
T ss_dssp GCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTT-SCCCEE---CTTTTTTCTTCCEEECCSS-CCCCCCTT---
T ss_pred CCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCC-CCCCCC---ChHHhcCCCCCCEEECCCC-cCCCCCHH---
Confidence 455666666665433 34554445577888888887 456655 5556677788888888875 37666653
Q ss_pred hhhhhhhccCCCccEEecccCccccccccc-cCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGLVKLPQS-SFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEA 187 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~ 187 (551)
.+..+ ++|++|++++| .+..+|.. +..+++|++|+++++ .++.+++ +..+++|++|++++|. +..++.
T Consensus 118 -~~~~l----~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~- 188 (597)
T 3oja_B 118 -VFQNV----PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVDL- 188 (597)
T ss_dssp -TTTTC----TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG-
T ss_pred -HHcCC----CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC-CCCcCh-
Confidence 24555 78888888775 44566554 467788888888774 4555543 5567788888887754 444432
Q ss_pred hhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCccc
Q 008856 188 WMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI 267 (551)
Q Consensus 188 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 267 (551)
..+++|+.|+++++ .++.+ ..+++|+.|+++++ .+..+ +..+. ++|+.|+++++ .++..
T Consensus 189 ---~~l~~L~~L~l~~n-~l~~l---~~~~~L~~L~ls~n-~l~~~--~~~~~----------~~L~~L~L~~n-~l~~~ 247 (597)
T 3oja_B 189 ---SLIPSLFHANVSYN-LLSTL---AIPIAVEELDASHN-SINVV--RGPVN----------VELTILKLQHN-NLTDT 247 (597)
T ss_dssp ---GGCTTCSEEECCSS-CCSEE---ECCTTCSEEECCSS-CCCEE--ECSCC----------SCCCEEECCSS-CCCCC
T ss_pred ---hhhhhhhhhhcccC-ccccc---cCCchhheeeccCC-ccccc--ccccC----------CCCCEEECCCC-CCCCC
Confidence 22367888887774 33333 34567888888774 45544 33322 36888888874 34431
Q ss_pred ccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCC
Q 008856 268 FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGN 347 (551)
Q Consensus 268 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 347 (551)
.....++ +|++|++++|......+..+..+++|+.|++++ +.+..+|.....+++|++|++++| .
T Consensus 248 ~~l~~l~-------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 248 AWLLNYP-------------GLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp GGGGGCT-------------TCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-C
T ss_pred hhhccCC-------------CCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-C
Confidence 1111222 488888888876666677788888888888888 567777776777888888888885 5
Q ss_pred CccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc
Q 008856 348 LVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 348 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~ 392 (551)
+..+|.....+++|+.|++++|. ++.++ +..+++|+.|++++
T Consensus 313 l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 313 LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCS
T ss_pred CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeC
Confidence 55666544445688888888854 55553 66778888888877
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-22 Score=214.24 Aligned_cols=437 Identities=16% Similarity=0.142 Sum_probs=231.9
Q ss_pred ceEEeCCCCCcc---ccccccccceeeeccccCcccceeccC-----------CcCCCCCCccEEEecCCCCchhhcccC
Q 008856 15 CKMEIGGCKKVV---WRSATDHLGSQNSVVCRDASNQVFLAG-----------PLKPRIPKLEELKINNIQNETCIWKSH 80 (551)
Q Consensus 15 ~~L~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~-----------~~~~~~~~L~~L~l~~~~~l~~~~~~~ 80 (551)
+.+++.+|.... +...+++|+.|++.+|....+....+. .+...+++|++|++++|. +.+. .
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~---~ 121 (594)
T 2p1m_B 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDD---C 121 (594)
T ss_dssp CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHH---H
T ss_pred eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHH---H
Confidence 345555554433 223366677777777654432111111 112347888999998864 4433 2
Q ss_pred cchhc-ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc----ccccccCCCCCCceEEEccC
Q 008856 81 NELLQ-DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV----KLPQSSFSLSSLREIEIFKC 155 (551)
Q Consensus 81 ~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~----~~~~~~~~l~~L~~L~l~~c 155 (551)
...+. .+++|++|++.+|..++.. ++..+...+++|++|++++|..-. .++.....+++|++|++++|
T Consensus 122 ~~~l~~~~~~L~~L~L~~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 122 LELIAKSFKNFKVLVLSSCEGFSTD-------GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCEEEEHH-------HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred HHHHHHhCCCCcEEeCCCcCCCCHH-------HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 22333 6888999999888655541 122223334889999998875211 13333446778888888887
Q ss_pred C-CCc--ccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCC------cceec-cccCCCCccEE-E
Q 008856 156 S-SLV--SFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRS------LTYIA-AVQLPSSLKML-T 223 (551)
Q Consensus 156 ~-~l~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~-~~~~~~~L~~L-~ 223 (551)
. .+. .+.. ...+++|++|++++|..+..++... ...++|+.|++.++.. +..++ ....+++|+.+ .
T Consensus 195 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~ 272 (594)
T 2p1m_B 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL--QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272 (594)
T ss_dssp CSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH--HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH--hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccC
Confidence 5 111 1111 2336888888888886665544332 2337788888766532 01111 11334566666 2
Q ss_pred EecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhh
Q 008856 224 IWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESI 303 (551)
Q Consensus 224 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~ 303 (551)
+.+ ...-.++..+.. +++|++|++++|. ++. .. +...+.++ ++|++|++++|.....+
T Consensus 273 ~~~---~~~~~l~~~~~~--------~~~L~~L~L~~~~-l~~-~~---l~~~~~~~------~~L~~L~l~~~~~~~~l 330 (594)
T 2p1m_B 273 FWD---AVPAYLPAVYSV--------CSRLTTLNLSYAT-VQS-YD---LVKLLCQC------PKLQRLWVLDYIEDAGL 330 (594)
T ss_dssp CBT---CCGGGGGGGHHH--------HTTCCEEECTTCC-CCH-HH---HHHHHTTC------TTCCEEEEEGGGHHHHH
T ss_pred Ccc---cchhhHHHHHHh--------hCCCCEEEccCCC-CCH-HH---HHHHHhcC------CCcCEEeCcCccCHHHH
Confidence 222 111111222222 5578888888866 432 11 11111111 25888888887322233
Q ss_pred HhhhcCCCCCcEEEEec--------CCCcccc-cccc-cCCCCcceEEecCCCCCccCC--CCCCCCCCccEEEEc----
Q 008856 304 AERLDNNTSLETISIYN--------CENLKIL-PSGL-HKLHQLREISIGSCGNLVSFP--GGGLPCAKLTALEIY---- 367 (551)
Q Consensus 304 ~~~~~~l~~L~~L~l~~--------~~~l~~~-~~~~-~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~---- 367 (551)
......+++|++|++++ |+.+... ...+ ..+++|++|.+.+ +.++... .....+++|+.|+++
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 33444578888888844 3334322 1112 2478888886544 4443211 111124588888888
Q ss_pred -cCccccccc------cccccCCcccceecccccc--ccccCC-cCCCcceeEecCCchhhhhhhhhccccccCCCccEE
Q 008856 368 -DCKRLKALP------KGLHNLSTLQDLTIGGALL--SLEEDG-LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHL 437 (551)
Q Consensus 368 -~c~~l~~~~------~~~~~l~~L~~L~l~~~l~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 437 (551)
+|+.++..| ..+.++++|+.|++++.+. .++..+ .+++|++|++++|.......... ...+++|++|
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l---~~~~~~L~~L 486 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKL 486 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH---HHHCTTCCEE
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH---HhcCCCcCEE
Confidence 566666433 1245677888888866111 111111 25778888888877433322221 3567888888
Q ss_pred EEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhc-cCCCCcCEEEEcC
Q 008856 438 TIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSI-IDLRNLTELVLRG 499 (551)
Q Consensus 438 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~ 499 (551)
++++|. +...... .....+++|+.|++++|+.-..-...+ ..+|+|+...+..
T Consensus 487 ~L~~n~----~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 487 EIRDCP----FGDKALL-----ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp EEESCS----CCHHHHH-----HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred ECcCCC----CcHHHHH-----HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 888873 2111100 011234678888888765422211222 4567766655554
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-20 Score=193.64 Aligned_cols=297 Identities=21% Similarity=0.281 Sum_probs=183.3
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
+++++|++++ +.++.+ +...+..+++|++|+++++ .++.+.+. ++..+ ++|++|+|++| .+..++.
T Consensus 32 ~~l~~L~L~~-n~l~~~---~~~~~~~l~~L~~L~L~~n-~i~~~~~~----~~~~l----~~L~~L~L~~n-~l~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTL---NQDEFASFPHLEELELNEN-IVSAVEPG----AFNNL----FNLRTLGLRSN-RLKLIPL 97 (477)
T ss_dssp TTCSEEECCS-SCCCEE---CTTTTTTCTTCCEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSS-CCCSCCT
T ss_pred CCCcEEECCC-CccceE---CHhHccCCCCCCEEECCCC-ccCEeChh----hhhCC----ccCCEEECCCC-cCCccCc
Confidence 4556666665 345544 4444555666666666654 35444332 24444 56666666553 3344443
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc--c
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--Q 214 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~ 214 (551)
.+..+++|++|+++++ .+..+.+ +..+++|++|++++|. ++.+... .
T Consensus 98 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~---------------------------l~~~~~~~~~ 149 (477)
T 2id5_A 98 GVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDND---------------------------LVYISHRAFS 149 (477)
T ss_dssp TSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTT---------------------------CCEECTTSST
T ss_pred ccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCc---------------------------cceeChhhcc
Confidence 2445555555555553 3333322 3344555555555432 2222221 2
Q ss_pred CCCCccEEEEecCCCcccccccc-cccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEE
Q 008856 215 LPSSLKMLTIWYCDNIRTLTVEE-GIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLR 293 (551)
Q Consensus 215 ~~~~L~~L~l~~~~~l~~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 293 (551)
.+++|+.|+++++ .++.+ +. .+.. +++|+.|+++++ .+.. ++...+.. + ++|++|+
T Consensus 150 ~l~~L~~L~l~~n-~l~~~--~~~~l~~--------l~~L~~L~l~~n-~i~~-~~~~~~~~----l------~~L~~L~ 206 (477)
T 2id5_A 150 GLNSLEQLTLEKC-NLTSI--PTEALSH--------LHGLIVLRLRHL-NINA-IRDYSFKR----L------YRLKVLE 206 (477)
T ss_dssp TCTTCCEEEEESC-CCSSC--CHHHHTT--------CTTCCEEEEESC-CCCE-ECTTCSCS----C------TTCCEEE
T ss_pred CCCCCCEEECCCC-cCccc--ChhHhcc--------cCCCcEEeCCCC-cCcE-eChhhccc----C------cccceee
Confidence 2356666666664 34433 32 2333 556888888873 4444 22222111 1 2599999
Q ss_pred eccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEccCcc
Q 008856 294 VRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKR 371 (551)
Q Consensus 294 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~ 371 (551)
+++|.....++.......+|++|++++ +.+..+| ..+..+++|++|++++| .+..++. ....+++|+.|+++++.
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~- 283 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITH-CNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ- 283 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEES-SCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-
T ss_pred CCCCccccccCcccccCccccEEECcC-CcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCc-
Confidence 999987777766666667999999999 5677775 46788999999999995 4555554 44556799999999965
Q ss_pred cccc-ccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhh
Q 008856 372 LKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEW 424 (551)
Q Consensus 372 l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~ 424 (551)
++.+ +..+.++++|+.|++++ .+..++.. ..+++|++|++++|+...+....|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 5444 67789999999999999 88877764 457899999999998554443334
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-23 Score=218.72 Aligned_cols=399 Identities=17% Similarity=0.146 Sum_probs=229.6
Q ss_pred hccCCCCcceEEeCCCCCcc-------------------ccccccccceeeeccccCcccceeccCCcCCCCCC-ccEEE
Q 008856 7 SITSLPALCKMEIGGCKKVV-------------------WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPK-LEELK 66 (551)
Q Consensus 7 ~~~~~~~L~~L~l~~~~~~~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~ 66 (551)
.+.++++|++|++++|.... +...+++|+.|++.+|....... ..+...+++ |++|+
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~---~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL---DRLAKARADDLETLK 144 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH---HHHHHHHGGGCCEEE
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHH---HHHHHhccccCcEEE
Confidence 46678999999998876532 11147889999999885433211 111112445 99999
Q ss_pred ecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccc----cccccccC
Q 008856 67 INNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGL----VKLPQSSF 142 (551)
Q Consensus 67 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l----~~~~~~~~ 142 (551)
+++|..+... +.......+++|++|++++|. +...... ++..+...+++|++|+++++..- ..++..+.
T Consensus 145 L~~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~-~~~~~~~----~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 145 LDKCSGFTTD--GLLSIVTHCRKIKTLLMEESS-FSEKDGK----WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp EESCEEEEHH--HHHHHHHHCTTCSEEECTTCE-EECCCSH----HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred CcCCCCcCHH--HHHHHHhhCCCCCEEECcccc-ccCcchh----HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 9998754432 112233578999999999974 5443321 23333334499999999886432 23444566
Q ss_pred CCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhh-ccCCCccEEEEecCCCcceeccc-cCCCCc
Q 008856 143 SLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMC-DTNSSLEILSIHGCRSLTYIAAV-QLPSSL 219 (551)
Q Consensus 143 ~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L 219 (551)
.+++|++|++++| .+..++. +..+++|++|+++++.........+.. ...++|+.|+++++. ...++.. ..+++|
T Consensus 218 ~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGC
T ss_pred hCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCC
Confidence 7899999999986 4444544 456889999999864332211111111 223789999888742 2233322 456789
Q ss_pred cEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEecc---
Q 008856 220 KMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRY--- 296 (551)
Q Consensus 220 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~--- 296 (551)
++|++++|. ++...+...+.. +++|++|+++++ +. ...++.....+ ++|++|++++
T Consensus 296 ~~L~Ls~~~-l~~~~~~~~~~~--------~~~L~~L~L~~~--~~----~~~l~~~~~~~------~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 296 RKLDLLYAL-LETEDHCTLIQK--------CPNLEVLETRNV--IG----DRGLEVLAQYC------KQLKRLRIERGAD 354 (592)
T ss_dssp CEEEETTCC-CCHHHHHHHHTT--------CTTCCEEEEEGG--GH----HHHHHHHHHHC------TTCCEEEEECCCC
T ss_pred cEEecCCCc-CCHHHHHHHHHh--------CcCCCEEeccCc--cC----HHHHHHHHHhC------CCCCEEEeecCcc
Confidence 999999876 543322222233 667999999842 21 11222211221 2599999994
Q ss_pred -------Ccchh--hhHhhhcCCCCCcEEEEecCCCcccc-cccccC-CCCcceEEecC---CCCCccCCC------CCC
Q 008856 297 -------CSKLE--SIAERLDNNTSLETISIYNCENLKIL-PSGLHK-LHQLREISIGS---CGNLVSFPG------GGL 356 (551)
Q Consensus 297 -------~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~-~~~L~~L~l~~---~~~l~~l~~------~~~ 356 (551)
|..+. .+......+++|++|+++. +.+... +..+.. +++|++|++++ |+.++..|. ...
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~ 433 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433 (592)
T ss_dssp SSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH
T ss_pred ccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH
Confidence 43333 2334456789999999955 666543 344444 88999999984 455554332 122
Q ss_pred CCCCccEEEEccCcc-ccc-ccccc-ccCCcccceeccc-cccc--cccC-CcCCCcceeEecCCchhhhhhhhhccccc
Q 008856 357 PCAKLTALEIYDCKR-LKA-LPKGL-HNLSTLQDLTIGG-ALLS--LEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFH 429 (551)
Q Consensus 357 ~~~~L~~L~l~~c~~-l~~-~~~~~-~~l~~L~~L~l~~-~l~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 429 (551)
.+++|+.|++++|.. ++. .+..+ ..+++|+.|++++ .+.. ++.. ..+++|++|++++|+......+.. ..
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~ 510 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA---VT 510 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH---HH
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH---HH
Confidence 255788888876653 221 11112 2355566666655 3321 1111 234566666666665221112211 34
Q ss_pred cCCCccEEEEecc
Q 008856 430 RFSSLRHLTIDGC 442 (551)
Q Consensus 430 ~l~~L~~L~l~~~ 442 (551)
.+++|++|++++|
T Consensus 511 ~l~~L~~L~ls~n 523 (592)
T 3ogk_B 511 KLPSLRYLWVQGY 523 (592)
T ss_dssp HCSSCCEEEEESC
T ss_pred hcCccCeeECcCC
Confidence 5566666666666
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-21 Score=210.07 Aligned_cols=400 Identities=15% Similarity=0.172 Sum_probs=234.1
Q ss_pred CCCCCCccEEEecCCCCchhhcccC-----------cchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCcc
Q 008856 56 KPRIPKLEELKINNIQNETCIWKSH-----------NELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLE 124 (551)
Q Consensus 56 ~~~~~~L~~L~l~~~~~l~~~~~~~-----------~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~ 124 (551)
...+++|++|+++++..+.+....+ ......+++|++|++++|. ++... +..+...+++|+
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~-------~~~l~~~~~~L~ 133 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDC-------LELIAKSFKNFK 133 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHH-------HHHHHHHCTTCC
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHH-------HHHHHHhCCCCc
Confidence 3457999999999987655431000 1223568899999999974 54321 223332348999
Q ss_pred EEecccCccccc--cccccCCCCCCceEEEccCCCCcc-----cCC-CCCCCCCcEEEccCCC-CccccchhhhhccCCC
Q 008856 125 YLILSYCEGLVK--LPQSSFSLSSLREIEIFKCSSLVS-----FPE-VALPSKLKKIQIGECD-ALKSLPEAWMCDTNSS 195 (551)
Q Consensus 125 ~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~-----~~~-~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~ 195 (551)
+|++++|..+.. ++.....+++|++|++++|. ++. ++. ...+++|++|++++|. .+............++
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~ 212 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC
Confidence 999999866553 44455578999999999875 332 222 2357899999999876 2221111111123488
Q ss_pred ccEEEEecCCCcceeccc-cCCCCccEEEEecCCC------cccccccccccccCCCcccccCCccEEE-EecCCCCccc
Q 008856 196 LEILSIHGCRSLTYIAAV-QLPSSLKMLTIWYCDN------IRTLTVEEGIQCSSSSRRYTSYLLEHLG-IRYCPSLTCI 267 (551)
Q Consensus 196 L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~------l~~l~~~~~~~~~~~~~~~~~~~L~~L~-l~~c~~l~~~ 267 (551)
|++|++++|..++.++.. ..+++|+.|.+..+.. +..+ +..+.. +++|+.+. +.+
T Consensus 213 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l--~~~l~~--------~~~L~~Ls~~~~------- 275 (594)
T 2p1m_B 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL--SVALSG--------CKELRCLSGFWD------- 275 (594)
T ss_dssp CCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH--HHHHHT--------CTTCCEEECCBT-------
T ss_pred CcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH--HHHHhc--------CCCcccccCCcc-------
Confidence 999999998666654433 4467899998776532 1122 223333 55677762 222
Q ss_pred ccCCCchhhhhhccccCCCCCccEEEeccCcchhh-hHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCC-
Q 008856 268 FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLES-IAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSC- 345 (551)
Q Consensus 268 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~- 345 (551)
.....++..+..+ ++|++|++++|..... +...+..+++|++|++++|-.-..++.....+++|++|++++|
T Consensus 276 ~~~~~l~~~~~~~------~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 349 (594)
T 2p1m_B 276 AVPAYLPAVYSVC------SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE 349 (594)
T ss_dssp CCGGGGGGGHHHH------TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSC
T ss_pred cchhhHHHHHHhh------CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCc
Confidence 1222233322222 2699999999974332 3444678999999999986211122333345899999999543
Q ss_pred -------CCCccC--CCCCCCCCCccEEEEccCcccccc-cccc-ccCCcccceecc-----c--ccccccc-------C
Q 008856 346 -------GNLVSF--PGGGLPCAKLTALEIYDCKRLKAL-PKGL-HNLSTLQDLTIG-----G--ALLSLEE-------D 400 (551)
Q Consensus 346 -------~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~-~~~~-~~l~~L~~L~l~-----~--~l~~l~~-------~ 400 (551)
+.+... ......+++|+.|.+. |+.++.. +..+ .++++|+.|+++ + .+...+. .
T Consensus 350 ~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~ 428 (594)
T 2p1m_B 350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428 (594)
T ss_dssp TTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence 333211 0011124588999554 4555432 2223 357888888887 1 3322111 1
Q ss_pred CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChh
Q 008856 401 GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLE 480 (551)
Q Consensus 401 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 480 (551)
..+++|++|++++ . +.+...... ...+++|+.|++++|. +....... ....+++|++|++++|+. .
T Consensus 429 ~~~~~L~~L~L~~-~-l~~~~~~~l--~~~~~~L~~L~L~~~~----i~~~~~~~-----l~~~~~~L~~L~L~~n~~-~ 494 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-L-LTDKVFEYI--GTYAKKMEMLSVAFAG----DSDLGMHH-----VLSGCDSLRKLEIRDCPF-G 494 (594)
T ss_dssp HHCTTCCEEECCS-S-CCHHHHHHH--HHHCTTCCEEEEESCC----SSHHHHHH-----HHHHCTTCCEEEEESCSC-C
T ss_pred hhCCCccEEeecC-c-ccHHHHHHH--HHhchhccEeeccCCC----CcHHHHHH-----HHhcCCCcCEEECcCCCC-c
Confidence 2357888888866 2 322222221 2347788888888873 32111100 011357888888888654 3
Q ss_pred hhh--hhccCCCCcCEEEEcCCCC
Q 008856 481 RLS--SSIIDLRNLTELVLRGCPK 502 (551)
Q Consensus 481 ~~~--~~~~~l~~L~~L~l~~c~~ 502 (551)
... ..+..+++|++|++++|+.
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhCCCCCEEeeeCCCC
Confidence 322 3445678888888888764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=176.64 Aligned_cols=295 Identities=14% Similarity=0.152 Sum_probs=148.3
Q ss_pred CccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccc
Q 008856 61 KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS 140 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~ 140 (551)
+++.+++++ ..++.+ |.. -.++|++|+++++ .++.+++. .+..+ ++|++|++++|......|..
T Consensus 32 ~l~~l~~~~-~~l~~l---p~~---~~~~l~~L~L~~n-~i~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSD-LGLEKV---PKD---LPPDTALLDLQNN-KITEIKDG----DFKNL----KNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTT-SCCCSC---CCS---CCTTCCEEECCSS-CCCCBCTT----TTTTC----TTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecC-CCcccc---Ccc---CCCCCeEEECCCC-cCCEeChh----hhccC----CCCCEEECCCCcCCeeCHHH
Confidence 555555555 334444 322 1245566666654 35555442 23444 56666666554322222445
Q ss_pred cCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCcc
Q 008856 141 SFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLK 220 (551)
Q Consensus 141 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 220 (551)
+..+++|++|+++++ .++.++.. .+++|++|++++|. +..++...+ ..+++|+
T Consensus 96 ~~~l~~L~~L~Ls~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~------------------------~~l~~L~ 148 (330)
T 1xku_A 96 FAPLVKLERLYLSKN-QLKELPEK-MPKTLQELRVHENE-ITKVRKSVF------------------------NGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSS-CCSBCCSS-CCTTCCEEECCSSC-CCBBCHHHH------------------------TTCTTCC
T ss_pred hcCCCCCCEEECCCC-cCCccChh-hcccccEEECCCCc-ccccCHhHh------------------------cCCcccc
Confidence 555556666666553 34444431 12455555555533 222222111 2234455
Q ss_pred EEEEecCCCccccc-ccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc
Q 008856 221 MLTIWYCDNIRTLT-VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK 299 (551)
Q Consensus 221 ~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 299 (551)
.|+++++ .++..+ .+..+.. +++|++|++++ +.++. ++....+ +|++|++++|..
T Consensus 149 ~L~l~~n-~l~~~~~~~~~~~~--------l~~L~~L~l~~-n~l~~-l~~~~~~-------------~L~~L~l~~n~l 204 (330)
T 1xku_A 149 VVELGTN-PLKSSGIENGAFQG--------MKKLSYIRIAD-TNITT-IPQGLPP-------------SLTELHLDGNKI 204 (330)
T ss_dssp EEECCSS-CCCGGGBCTTGGGG--------CTTCCEEECCS-SCCCS-CCSSCCT-------------TCSEEECTTSCC
T ss_pred EEECCCC-cCCccCcChhhccC--------CCCcCEEECCC-Ccccc-CCccccc-------------cCCEEECCCCcC
Confidence 5555543 222110 0233333 55677777777 33444 3333222 488888888765
Q ss_pred hhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccc
Q 008856 300 LESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKG 378 (551)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 378 (551)
....+..+..+++|+.|++++ +.+..+ +..+..+++|++|++++| .+..+|.....+++|+.|++++| .++.++..
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred CccCHHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChh
Confidence 554556677778888888877 445555 335666777777777774 55556554445556666666663 34443321
Q ss_pred -cccCCcccceeccccccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 379 -LHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 379 -~~~l~~L~~L~l~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+.... .....+.|+.|++++|+.......... +..+++++.+++++|
T Consensus 282 ~f~~~~---------------~~~~~~~l~~l~l~~N~~~~~~i~~~~--f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 282 DFCPPG---------------YNTKKASYSGVSLFSNPVQYWEIQPST--FRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCSS---------------CCTTSCCCSEEECCSSSSCGGGSCGGG--GTTCCCGGGEEC---
T ss_pred hcCCcc---------------cccccccccceEeecCcccccccCccc--cccccceeEEEeccc
Confidence 11100 001235677777777774321111111 566777777777665
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=179.45 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=40.4
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccCC--------cCCCcceeEecCCchhhhhhhhhcccccc
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDG--------LPTNLHSLVIRGNMEIWKSMIEWGRGFHR 430 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 430 (551)
+|+.|++++| .++.+|..+..+++|+.|++++ .+..++... ..++|+.|++.+|+.......... +..
T Consensus 242 ~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~--~~~ 318 (332)
T 2ft3_A 242 TLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT--FRC 318 (332)
T ss_dssp TCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG--GTT
T ss_pred CCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc--ccc
Confidence 4444444442 3444554455555555555555 444443221 135677888888874322122111 667
Q ss_pred CCCccEEEEecc
Q 008856 431 FSSLRHLTIDGC 442 (551)
Q Consensus 431 l~~L~~L~l~~~ 442 (551)
+++|+.+++++|
T Consensus 319 l~~L~~l~l~~n 330 (332)
T 2ft3_A 319 VTDRLAIQFGNY 330 (332)
T ss_dssp BCCSTTEEC---
T ss_pred cchhhhhhcccc
Confidence 777777777766
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-19 Score=174.20 Aligned_cols=284 Identities=18% Similarity=0.230 Sum_probs=176.4
Q ss_pred cccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhh
Q 008856 32 DHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKD 111 (551)
Q Consensus 32 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 111 (551)
.+++.+++.++... .+|..+ .+++++|++++ +.++.+ +...+..+++|++|+++++ .++.+.+.
T Consensus 31 c~l~~l~~~~~~l~----~lp~~~---~~~l~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~---- 94 (330)
T 1xku_A 31 CHLRVVQCSDLGLE----KVPKDL---PPDTALLDLQN-NKITEI---KDGDFKNLKNLHTLILINN-KISKISPG---- 94 (330)
T ss_dssp EETTEEECTTSCCC----SCCCSC---CTTCCEEECCS-SCCCCB---CTTTTTTCTTCCEEECCSS-CCCCBCTT----
T ss_pred CCCeEEEecCCCcc----ccCccC---CCCCeEEECCC-CcCCEe---ChhhhccCCCCCEEECCCC-cCCeeCHH----
Confidence 35677776665433 244332 36889999998 567776 6666788999999999986 47777543
Q ss_pred hhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCcc--ccchh
Q 008856 112 QQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALK--SLPEA 187 (551)
Q Consensus 112 ~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~--~~~~~ 187 (551)
++..+ ++|++|++++| .+..+|..+. ++|++|+++++ .++.++. +..+++|++|++++|.... ..+..
T Consensus 95 ~~~~l----~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 95 AFAPL----VKLERLYLSKN-QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp TTTTC----TTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred HhcCC----CCCCEEECCCC-cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhh
Confidence 36666 89999999985 4567776554 78999999985 5666665 5678999999998865321 11111
Q ss_pred hhhccCCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCccc
Q 008856 188 WMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCI 267 (551)
Q Consensus 188 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 267 (551)
+ ..+++|+.|+++++. ++.++.. ..++|+ +|+++++ .++.
T Consensus 167 ~--~~l~~L~~L~l~~n~-l~~l~~~-~~~~L~----------------------------------~L~l~~n-~l~~- 206 (330)
T 1xku_A 167 F--QGMKKLSYIRIADTN-ITTIPQG-LPPSLT----------------------------------ELHLDGN-KITK- 206 (330)
T ss_dssp G--GGCTTCCEEECCSSC-CCSCCSS-CCTTCS----------------------------------EEECTTS-CCCE-
T ss_pred c--cCCCCcCEEECCCCc-cccCCcc-ccccCC----------------------------------EEECCCC-cCCc-
Confidence 1 223666666666632 3333321 123444 4444442 2222
Q ss_pred ccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCC
Q 008856 268 FSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGN 347 (551)
Q Consensus 268 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 347 (551)
.+.. .+..+ ++|++|++++|......+..+..+++|+.|++++ +.+..+|..+..+++|++|++++| .
T Consensus 207 ~~~~----~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~ 274 (330)
T 1xku_A 207 VDAA----SLKGL------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN-N 274 (330)
T ss_dssp ECTG----GGTTC------TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS-C
T ss_pred cCHH----HhcCC------CCCCEEECCCCcCceeChhhccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCC-c
Confidence 1111 11111 1477888877765444455677888999999998 567788888888999999999984 5
Q ss_pred CccCCCCCC-------CCCCccEEEEccCcccc--ccccccccCCcccceecc
Q 008856 348 LVSFPGGGL-------PCAKLTALEIYDCKRLK--ALPKGLHNLSTLQDLTIG 391 (551)
Q Consensus 348 l~~l~~~~~-------~~~~L~~L~l~~c~~l~--~~~~~~~~l~~L~~L~l~ 391 (551)
++.++.... ..++++.+++.+++... ..|..+..+.+++.++++
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 666554222 12467777777654211 122344445555555543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-21 Score=200.90 Aligned_cols=385 Identities=18% Similarity=0.204 Sum_probs=189.8
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP- 138 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~- 138 (551)
++|++|++++ +.+.+. .....+..+++|++|++++|. ++......+...+..+ ++|++|++++|..-...+
T Consensus 3 ~~l~~L~Ls~-~~l~~~--~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~----~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQC-EELSDA--RWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVN----PALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEEEES-CCCCHH--HHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHHHH
T ss_pred ccceehhhhh-cccCch--hHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhC----CCcCEEeCCCCcCChHHHH
Confidence 5778888877 445443 122335678888888888875 6543332333344444 888888888864222111
Q ss_pred cccCCCC----CCceEEEccCCCCcc-----cCC-CCCCCCCcEEEccCCCCccccchhhhhc----cCCCccEEEEecC
Q 008856 139 QSSFSLS----SLREIEIFKCSSLVS-----FPE-VALPSKLKKIQIGECDALKSLPEAWMCD----TNSSLEILSIHGC 204 (551)
Q Consensus 139 ~~~~~l~----~L~~L~l~~c~~l~~-----~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~L~~L~l~~~ 204 (551)
.....++ +|++|++++| .++. ++. +..+++|++|++++|. +.......... ..++|++|++++|
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 1122233 5888888775 3442 222 4556777777777755 33221111100 1133444444443
Q ss_pred CCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccC
Q 008856 205 RSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGN 284 (551)
Q Consensus 205 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~ 284 (551)
. ++... ...+ +..+.. +++|++|+++++. +.+ .+...+...+. .
T Consensus 153 ~-l~~~~------------------~~~l--~~~l~~--------~~~L~~L~L~~n~-i~~-~~~~~l~~~l~-----~ 196 (461)
T 1z7x_W 153 S-LSAAS------------------CEPL--ASVLRA--------KPDFKELTVSNND-INE-AGVRVLCQGLK-----D 196 (461)
T ss_dssp C-CBGGG------------------HHHH--HHHHHH--------CTTCCEEECCSSB-CHH-HHHHHHHHHHH-----H
T ss_pred C-CCHHH------------------HHHH--HHHHhh--------CCCCCEEECcCCC-cch-HHHHHHHHHHh-----c
Confidence 1 11100 0000 111111 2234444444321 111 00000000000 0
Q ss_pred CCCCccEEEeccCcchh----hhHhhhcCCCCCcEEEEecCCCcccc------cccccCCCCcceEEecCCCCCccCCCC
Q 008856 285 LPPSLKSLRVRYCSKLE----SIAERLDNNTSLETISIYNCENLKIL------PSGLHKLHQLREISIGSCGNLVSFPGG 354 (551)
Q Consensus 285 ~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~l~~~~~l~~l~~~ 354 (551)
..++|++|++++|.... .++..+..+++|++|++++| .+... +.....++
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~------------------- 256 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSS------------------- 256 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTC-------------------
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCC-------------------
Confidence 00135555555554322 13334444555555555553 22221 01111234
Q ss_pred CCCCCCccEEEEccCccccc-----cccccccCCcccceeccc-cccc-----cccC--CcCCCcceeEecCCchhhhhh
Q 008856 355 GLPCAKLTALEIYDCKRLKA-----LPKGLHNLSTLQDLTIGG-ALLS-----LEED--GLPTNLHSLVIRGNMEIWKSM 421 (551)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~-----~~~~~~~l~~L~~L~l~~-~l~~-----l~~~--~~~~~L~~L~l~~~~~~~~~~ 421 (551)
+|++|++++| .++. ++..+.++++|+.|++++ .+.. +... ...++|++|++++|.......
T Consensus 257 -----~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 257 -----RLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp -----CCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred -----CceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 5555555554 2332 444555566677777766 3321 1111 123689999999888544322
Q ss_pred hhhccccccCCCccEEEEeccCCCCcccccccccccccccc-cccccccccccccCCChh-----hhhhhccCCCCcCEE
Q 008856 422 IEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVL-RLPTTLTSLRIEDFPNLE-----RLSSSIIDLRNLTEL 495 (551)
Q Consensus 422 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L 495 (551)
......+..+++|++|++++|. +....... ....+ ...++|++|++++| .++ .++..+..+++|++|
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~----i~~~~~~~--l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNR----LEDAGVRE--LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSB----CHHHHHHH--HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHhhCCCccEEEccCCc----cccccHHH--HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEE
Confidence 2222226678999999999883 43332111 00000 01468999999994 666 577778889999999
Q ss_pred EEcCCCCccccCC-------CCCccccceEeecCCc
Q 008856 496 VLRGCPKLKYFPE-------KGLPSSLLELWISGCP 524 (551)
Q Consensus 496 ~l~~c~~l~~l~~-------~~~~~~L~~L~i~~c~ 524 (551)
++++|+ +..... .....+|+.|.+.++.
T Consensus 404 ~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 404 DLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp ECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred ECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 999964 543210 0112367778777663
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-19 Score=175.54 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=65.7
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCC-------CCCC
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGL-------PCAK 360 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-------~~~~ 360 (551)
+|++|++++|......+..+..+++|+.|++++ +.+..+|..+..+++|++|++++| .++.++.... ..++
T Consensus 218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCEEECCCCcCCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCC-CCCccChhHcccccccccccc
Confidence 488888888765554455677888888888888 567778777888888888888884 5555543211 1246
Q ss_pred ccEEEEccCccc--cccccccccCCcccceecc
Q 008856 361 LTALEIYDCKRL--KALPKGLHNLSTLQDLTIG 391 (551)
Q Consensus 361 L~~L~l~~c~~l--~~~~~~~~~l~~L~~L~l~ 391 (551)
|+.|++.+++.. ...+..+..+++|+.++++
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred ccceEeecCcccccccCcccccccchhhhhhcc
Confidence 777777775432 2223445555555555553
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=178.70 Aligned_cols=194 Identities=24% Similarity=0.407 Sum_probs=101.8
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCC---------CC
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLP---------CA 359 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~---------~~ 359 (551)
|++|++++|... .++..++.+++|++|++++ +.+..+|..+..+++|++|++++|+....+|..... ++
T Consensus 106 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~ 183 (328)
T 4fcg_A 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183 (328)
T ss_dssp CSEEEEESSCCC-CCCSCGGGGTTCSEEEEES-CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred CCEEECCCCCcc-chhHHHhccCCCCEEECCC-CccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence 566666555433 4455556666666666666 445566666666666666666666655555543221 44
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEE
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHL 437 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 437 (551)
+|++|++++| .++.+|..+.++++|+.|++++ .+..++.. +.+++|++|++++|...... +.+ +..+++|++|
T Consensus 184 ~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~---~~~l~~L~~L 258 (328)
T 4fcg_A 184 NLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPI---FGGRAPLKRL 258 (328)
T ss_dssp TCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC-CCC---TTCCCCCCEE
T ss_pred CCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh-HHH---hcCCCCCCEE
Confidence 6666666663 4445555556666666666655 44444332 33455555555555533321 111 3445555555
Q ss_pred EEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcC
Q 008856 438 TIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRG 499 (551)
Q Consensus 438 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 499 (551)
++++| .. ...+|... ..+++|++|++++|+.++.+|.++.++++|+.+++..
T Consensus 259 ~L~~n-~~--~~~~p~~~-------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 259 ILKDC-SN--LLTLPLDI-------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ECTTC-TT--CCBCCTTG-------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ECCCC-Cc--hhhcchhh-------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 55554 22 33344322 2344555555555555555555555555555555543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-22 Score=204.83 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=72.6
Q ss_pred CCcceEEeCCCCCcc-----ccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcc
Q 008856 12 PALCKMEIGGCKKVV-----WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQD 86 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 86 (551)
++|++|++++++... +...+++|+.|++.+|.........-+.....+++|++|+++++ .+.+. +.......
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~--~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDV--GVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHH--HHHHHHHT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChH--HHHHHHHH
Confidence 567788887775433 12235666666666665432211111111223566666666663 34332 01111222
Q ss_pred cC----CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccc----cccc-cCCCCCCceEEEccCCC
Q 008856 87 IC----SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK----LPQS-SFSLSSLREIEIFKCSS 157 (551)
Q Consensus 87 l~----~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~----~~~~-~~~l~~L~~L~l~~c~~ 157 (551)
++ +|++|++++|. ++......+...+..+ ++|++|++++|..-.. +... ....++|++|++++| .
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~----~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~ 153 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTL----PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-S 153 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSC----TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-C
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccC----CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-C
Confidence 33 46666666653 4432222222233433 6666666666532111 1111 112345666666664 3
Q ss_pred CcccC-----C-CCCCCCCcEEEccCCC
Q 008856 158 LVSFP-----E-VALPSKLKKIQIGECD 179 (551)
Q Consensus 158 l~~~~-----~-~~~~~~L~~L~l~~~~ 179 (551)
++... . +..+++|++|++++|.
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 33211 1 2234566666666644
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=176.85 Aligned_cols=217 Identities=24% Similarity=0.325 Sum_probs=177.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+++.|++++|.. ..++..+..+++|++|++++ +.+..+|..+..+++|++|++++| .+..+|.....+++|++|+++
T Consensus 82 ~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPL-PQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCC-SSCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCc-hhcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 589999998864 46777788899999999999 567788988999999999999995 666888766677799999999
Q ss_pred cCcccccccccccc---------CCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccE
Q 008856 368 DCKRLKALPKGLHN---------LSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRH 436 (551)
Q Consensus 368 ~c~~l~~~~~~~~~---------l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 436 (551)
+|+....+|..+.. +++|+.|++++ .+..+|.. +.+++|++|++++|.... ..+. +..+++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~----l~~l~~L~~ 233 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPA----IHHLPKLEE 233 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGG----GGGCTTCCE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchh----hccCCCCCE
Confidence 99988888877654 99999999999 77777764 567899999999998442 2222 678999999
Q ss_pred EEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC-CCcccc
Q 008856 437 LTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK-GLPSSL 515 (551)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L 515 (551)
|++++| .. ...+|... ..+++|++|++++|+....+|..+..+++|++|++++|+.+..+|.. +-+++|
T Consensus 234 L~Ls~n-~~--~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 234 LDLRGC-TA--LRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp EECTTC-TT--CCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred EECcCC-cc--hhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 999998 34 55566544 36789999999998888889988999999999999999999988874 235678
Q ss_pred ceEeecC
Q 008856 516 LELWISG 522 (551)
Q Consensus 516 ~~L~i~~ 522 (551)
+.+.+..
T Consensus 304 ~~l~l~~ 310 (328)
T 4fcg_A 304 CIILVPP 310 (328)
T ss_dssp CEEECCG
T ss_pred eEEeCCH
Confidence 8887763
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=171.45 Aligned_cols=223 Identities=17% Similarity=0.208 Sum_probs=151.9
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccccc-ccCCCCcceEEecCCCCCccCCC--CCCCCCCccEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCGNLVSFPG--GGLPCAKLTAL 364 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L 364 (551)
+|++|++++|......+..+..+++|++|++++ +.+..++.. +..+++|++|++++| .++.++. ....+++|+.|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEE
Confidence 488888887755444455677788888888888 556666544 677888888888884 5556665 34456688888
Q ss_pred EEccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEe
Q 008856 365 EIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTID 440 (551)
Q Consensus 365 ~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 440 (551)
++++|..++.++ ..+.++++|+.|++++ .+..+... ..+++|++|++++|.. ....... +..+++|++|+++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~---~~~~~~L~~L~L~ 230 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIF---VDVTSSVECLELR 230 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHH---HHHTTTEEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhh---hhhcccccEEECC
Confidence 888876666663 5677888888888887 66555322 4578899999998884 3333222 4568899999999
Q ss_pred ccCCCCcccccccccccccccccccccccccccccC----CChhhhhhhccCCCCcCEEEEcCCCCccccCCCC--Cccc
Q 008856 441 GCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDF----PNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSS 514 (551)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~ 514 (551)
+|. +..++..... .....+.++.++++++ +.+..+|.++..+++|++|++++ ++++.+|... .+++
T Consensus 231 ~n~----l~~~~~~~l~---~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~ 302 (353)
T 2z80_A 231 DTD----LDTFHFSELS---TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIFDRLTS 302 (353)
T ss_dssp SCB----CTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred CCc----cccccccccc---cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHHhcCCC
Confidence 984 5544332100 0012334455555442 34456777888999999999999 4688888753 3689
Q ss_pred cceEeecCCc
Q 008856 515 LLELWISGCP 524 (551)
Q Consensus 515 L~~L~i~~c~ 524 (551)
|++|++++|+
T Consensus 303 L~~L~L~~N~ 312 (353)
T 2z80_A 303 LQKIWLHTNP 312 (353)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeeCCC
Confidence 9999999885
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-19 Score=172.27 Aligned_cols=221 Identities=14% Similarity=0.102 Sum_probs=142.5
Q ss_pred CccEEEecc-CcchhhhHhhhcCCCCCcEEEEecCCCcc-cccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEE
Q 008856 288 SLKSLRVRY-CSKLESIAERLDNNTSLETISIYNCENLK-ILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 365 (551)
+|++|++++ |.....++..+..+++|++|++++ +.+. .+|..+..+++|++|++++|.-...+|.....+++|++|+
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcC-CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 366666663 444445555566666777777766 3343 4566666667777777766432224444444455677777
Q ss_pred EccCccccccccccccCC-cccceeccc-ccc-ccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKALPKGLHNLS-TLQDLTIGG-ALL-SLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~-~L~~L~l~~-~l~-~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
+++|.....+|..+..++ +|+.|++++ .+. .++.. ..++ |++|++++|.... ..+.. +..+++|++|++++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DASVL---FGSDKNTQKIHLAK 230 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-CCGGG---CCTTSCCSEEECCS
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-cCCHH---HhcCCCCCEEECCC
Confidence 776443335666666666 777777776 444 23332 2233 8888888887433 22222 67888999999998
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChh-hhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEee
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLE-RLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWI 520 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i 520 (551)
|. +...+... ..+++|++|++++ +.+. .+|..+..+++|++|++++|+--..+|.....++|+.+++
T Consensus 231 N~----l~~~~~~~-------~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l 298 (313)
T 1ogq_A 231 NS----LAFDLGKV-------GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp SE----ECCBGGGC-------CCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred Cc----eeeecCcc-------cccCCCCEEECcC-CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence 83 44333222 2568899999998 5666 6778888899999999999654347777666788999999
Q ss_pred cCCchH
Q 008856 521 SGCPLI 526 (551)
Q Consensus 521 ~~c~~l 526 (551)
.+++.+
T Consensus 299 ~~N~~l 304 (313)
T 1ogq_A 299 ANNKCL 304 (313)
T ss_dssp CSSSEE
T ss_pred cCCCCc
Confidence 988754
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=174.29 Aligned_cols=197 Identities=18% Similarity=0.231 Sum_probs=133.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+.++++|++|++++ +.+..++. .+..+++|++|++++| .+..++. ....+++|+.|+
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeC
Confidence 477777777765444456677777788888777 45666643 4667777888888774 4555544 344556788888
Q ss_pred EccCcccccccc-ccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
+++|+.+..++. .+.++++|+.|++++ .+..++....+++|++|++++|.. ....+.. +..+++|++|++++|.
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL-SAIRPGS---FQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC-CEECTTT---TTTCTTCCEEECTTCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc-CccChhh---hccCccCCEEECCCCc
Confidence 877777776654 467777888888877 777777666677888888888763 3232332 6677888888888773
Q ss_pred CCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 444 DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
+..++... +..+++|+.|++++ +.++.++ ..+..+++|++|++++++
T Consensus 243 ----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 243 ----IQVIERNA------FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ----CCEECTTS------STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ----eeEEChhh------hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 55554432 23567788888887 6777776 445667888888887754
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=173.79 Aligned_cols=197 Identities=23% Similarity=0.283 Sum_probs=132.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+.++++|++|++++ +.+..++. .+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEe
Confidence 377777777755444455677777777777777 45666633 3566777777777774 4555544 344556777788
Q ss_pred EccCcccccccc-ccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
+++|+.++.++. .+.++++|+.|++++ .+..++....+++|++|++++|.... ..+.. +..+++|+.|++++|.
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE-IRPGS---FHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE-ECGGG---GTTCTTCCEEECTTSC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc-cCccc---ccCccCCCEEEeCCCc
Confidence 877777776654 466777888888877 66677666667788888888877333 32332 6677888888888773
Q ss_pred CCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 444 DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
+..++... +..+++|+.|++++ ++++.+| ..+..+++|++|++++++
T Consensus 254 ----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 254 ----VSLIERNA------FDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ----CCEECTTT------TTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ----CceECHHH------hcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 55554422 23457788888887 5777776 445667888888887754
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=163.64 Aligned_cols=249 Identities=23% Similarity=0.264 Sum_probs=123.7
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. ++..+ ++|++|++++| .+..++.
T Consensus 52 ~~L~~L~l~~-n~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSN-NRITYI---SNSDLQRCVNLQALVLTSN-GINTIEED----SFSSL----GSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp TTCCEEECTT-SCCCEE---CTTTTTTCTTCCEEECTTS-CCCEECTT----TTTTC----TTCCEEECCSS-CCSSCCH
T ss_pred ccCcEEECCC-CcCccc---CHHHhccCCCCCEEECCCC-ccCccCHh----hcCCC----CCCCEEECCCC-cCCcCCH
Confidence 4667777776 455555 5545666677777777764 36555442 24444 66777777664 3444443
Q ss_pred c-cCCCCCCceEEEccCCCCcccCC---CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccc--
Q 008856 140 S-SFSLSSLREIEIFKCSSLVSFPE---VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-- 213 (551)
Q Consensus 140 ~-~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-- 213 (551)
. +..+++|++|+++++ .++.++. +..+++|++|++++|..+..++...+ ..+++|+.|++++|. ++.+...
T Consensus 118 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~l 194 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASD-LQSYEPKSL 194 (353)
T ss_dssp HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETT-CCEECTTTT
T ss_pred hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCC-cCccCHHHH
Confidence 3 566667777777663 4555544 44566677777766654444433211 223566666666643 3333211
Q ss_pred cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEE
Q 008856 214 QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLR 293 (551)
Q Consensus 214 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 293 (551)
..+++|+.|+++++ .+..+ +..+.. .+++|++|+++++ .++. ++...++. ......++.++
T Consensus 195 ~~l~~L~~L~l~~n-~l~~~--~~~~~~-------~~~~L~~L~L~~n-~l~~-~~~~~l~~-------~~~~~~l~~l~ 255 (353)
T 2z80_A 195 KSIQNVSHLILHMK-QHILL--LEIFVD-------VTSSVECLELRDT-DLDT-FHFSELST-------GETNSLIKKFT 255 (353)
T ss_dssp TTCSEEEEEEEECS-CSTTH--HHHHHH-------HTTTEEEEEEESC-BCTT-CCCC-------------CCCCCCEEE
T ss_pred hccccCCeecCCCC-ccccc--hhhhhh-------hcccccEEECCCC-cccc-cccccccc-------ccccchhhccc
Confidence 33456666666664 33433 332211 1345666666663 3333 22111111 00011344555
Q ss_pred eccCcch----hhhHhhhcCCCCCcEEEEecCCCcccccccc-cCCCCcceEEecCC
Q 008856 294 VRYCSKL----ESIAERLDNNTSLETISIYNCENLKILPSGL-HKLHQLREISIGSC 345 (551)
Q Consensus 294 l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~~ 345 (551)
++++... ..++..+..+++|+.|++++ +.+..+|..+ ..+++|++|++++|
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCC
Confidence 5444322 12344445555555555555 3444444432 44555555555553
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-17 Score=172.29 Aligned_cols=131 Identities=27% Similarity=0.284 Sum_probs=65.5
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
|+.|++++|... .++ ..+++|+.|++++ +.+..+|.. +++|+.|++++| .++.++.. +++|+.|++++
T Consensus 163 L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~-N~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~ 230 (622)
T 3g06_A 163 LCKLWAYNNQLT-SLP---MLPSGLQELSVSD-NQLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSG 230 (622)
T ss_dssp CCEEECCSSCCS-CCC---CCCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTTCCEEECCS
T ss_pred CCEEECCCCCCC-CCc---ccCCCCcEEECCC-CCCCCCCCc---cchhhEEECcCC-cccccCCC---CCCCCEEEccC
Confidence 555555555322 222 3345555555555 344444322 345566666553 44444432 23566666665
Q ss_pred CccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 369 CKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 369 c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
| .++.+| ..+++|+.|++++ .+..+|. .+++|++|++++|... .+ +.. +..+++|+.|++++|
T Consensus 231 N-~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~l-p~~---l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 231 N-RLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RL-PES---LIHLSSETTVNLEGN 294 (622)
T ss_dssp S-CCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SC-CGG---GGGSCTTCEEECCSC
T ss_pred C-ccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cC-CHH---HhhccccCEEEecCC
Confidence 3 344444 2345555666655 5555554 4456666666666522 22 221 455666666666666
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-18 Score=164.81 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=97.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcc-cccccccCCC-CcceEEecCCCCCccCCCCCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLK-ILPSGLHKLH-QLREISIGSCGNLVSFPGGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 365 (551)
+|++|++++|.....++..+..+++|++|++++ +.+. .+|..+..++ +|++|++++|.....+|.....+ +|+.|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEE
Confidence 477777777655445566666677777777777 3344 5566666665 67777777643322344433333 367777
Q ss_pred EccCccccccccccccCCcccceeccc-cccc-cccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGG-ALLS-LEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
+++|......|..+..+++|+.|++++ .+.. ++....+++|++|++++|.... ..+.+ +..+++|++|++++|.
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~---l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-TLPQG---LTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-CCCGG---GGGCTTCCEEECCSSE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC-cCChH---HhcCcCCCEEECcCCc
Confidence 766543334455566666677666666 4432 2333445666666666666322 12222 5566666666666662
Q ss_pred CCCccc-ccccccccccccccccccccccccccCCCh
Q 008856 444 DDTMMV-SFPLEDKRLGTVLRLPTTLTSLRIEDFPNL 479 (551)
Q Consensus 444 ~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 479 (551)
+. .+|... .+++|+.+++++.+.+
T Consensus 280 ----l~~~ip~~~--------~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 280 ----LCGEIPQGG--------NLQRFDVSAYANNKCL 304 (313)
T ss_dssp ----EEEECCCST--------TGGGSCGGGTCSSSEE
T ss_pred ----ccccCCCCc--------cccccChHHhcCCCCc
Confidence 33 344322 3456666666664333
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-17 Score=171.02 Aligned_cols=253 Identities=26% Similarity=0.306 Sum_probs=137.3
Q ss_pred CccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccc
Q 008856 61 KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS 140 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~ 140 (551)
++++|++++ +.++.+ |... .++|++|++++| .++.++. .+++|++|++++| .+..+|.
T Consensus 41 ~l~~L~ls~-n~L~~l---p~~l---~~~L~~L~L~~N-~l~~lp~------------~l~~L~~L~Ls~N-~l~~lp~- 98 (622)
T 3g06_A 41 GNAVLNVGE-SGLTTL---PDCL---PAHITTLVIPDN-NLTSLPA------------LPPELRTLEVSGN-QLTSLPV- 98 (622)
T ss_dssp CCCEEECCS-SCCSCC---CSCC---CTTCSEEEECSC-CCSCCCC------------CCTTCCEEEECSC-CCSCCCC-
T ss_pred CCcEEEecC-CCcCcc---Chhh---CCCCcEEEecCC-CCCCCCC------------cCCCCCEEEcCCC-cCCcCCC-
Confidence 577777777 456665 5432 267777777775 3666544 1267777777775 3556664
Q ss_pred cCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCcc
Q 008856 141 SFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLK 220 (551)
Q Consensus 141 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 220 (551)
.+++|++|+++++ .++.++. .+++|+.|++++|. +..++.. .++|++|++++| .++.++ ..+++|+
T Consensus 99 --~l~~L~~L~Ls~N-~l~~l~~--~l~~L~~L~L~~N~-l~~lp~~-----l~~L~~L~Ls~N-~l~~l~--~~~~~L~ 164 (622)
T 3g06_A 99 --LPPGLLELSIFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLPVL-----PPGLQELSVSDN-QLASLP--ALPSELC 164 (622)
T ss_dssp --CCTTCCEEEECSC-CCCCCCC--CCTTCCEEECCSSC-CSCCCCC-----CTTCCEEECCSS-CCSCCC--CCCTTCC
T ss_pred --CCCCCCEEECcCC-cCCCCCC--CCCCcCEEECCCCC-CCcCCCC-----CCCCCEEECcCC-cCCCcC--CccCCCC
Confidence 5677777777763 5666655 56677777777654 4444432 256777777664 344443 2345666
Q ss_pred EEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcch
Q 008856 221 MLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKL 300 (551)
Q Consensus 221 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~ 300 (551)
.|+++++ .++.+ |.. +++|+.|++++ +.++. ++.. . ++|+.|++++|...
T Consensus 165 ~L~L~~N-~l~~l--~~~-----------~~~L~~L~Ls~-N~l~~-l~~~-~-------------~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 165 KLWAYNN-QLTSL--PML-----------PSGLQELSVSD-NQLAS-LPTL-P-------------SELYKLWAYNNRLT 214 (622)
T ss_dssp EEECCSS-CCSCC--CCC-----------CTTCCEEECCS-SCCSC-CCCC-C-------------TTCCEEECCSSCCS
T ss_pred EEECCCC-CCCCC--ccc-----------CCCCcEEECCC-CCCCC-CCCc-c-------------chhhEEECcCCccc
Confidence 6666653 44444 422 22466666665 33333 2211 1 13666666655322
Q ss_pred hhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccc
Q 008856 301 ESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLH 380 (551)
Q Consensus 301 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 380 (551)
.++. .+++|+.|++++ +.+..+| ..+++|++|++++| .++.+|. .+++|+.|++++| .++.+|..+.
T Consensus 215 -~l~~---~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~ 281 (622)
T 3g06_A 215 -SLPA---LPSGLKELIVSG-NRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLI 281 (622)
T ss_dssp -SCCC---CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGG
T ss_pred -ccCC---CCCCCCEEEccC-CccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHh
Confidence 2221 235566666655 3454444 23455666666653 4444444 2335566666553 3445555555
Q ss_pred cCCcccceeccc
Q 008856 381 NLSTLQDLTIGG 392 (551)
Q Consensus 381 ~l~~L~~L~l~~ 392 (551)
++++|+.|++++
T Consensus 282 ~l~~L~~L~L~~ 293 (622)
T 3g06_A 282 HLSSETTVNLEG 293 (622)
T ss_dssp GSCTTCEEECCS
T ss_pred hccccCEEEecC
Confidence 555555554444
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-18 Score=165.43 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=101.9
Q ss_pred CCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCc
Q 008856 194 SSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNEL 273 (551)
Q Consensus 194 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 273 (551)
++|+.|++++| .++.++.. .+++|+.|+++++ .++.+. +..+.. +++|++|+++++ .++. .+...+
T Consensus 99 ~~L~~L~l~~n-~l~~~~~~-~~~~L~~L~l~~N-~l~~~~-~~~~~~--------l~~L~~L~Ls~N-~l~~-~~~~~~ 164 (317)
T 3o53_A 99 PSIETLHAANN-NISRVSCS-RGQGKKNIYLANN-KITMLR-DLDEGC--------RSRVQYLDLKLN-EIDT-VNFAEL 164 (317)
T ss_dssp TTCCEEECCSS-CCSEEEEC-CCSSCEEEECCSS-CCCSGG-GBCTGG--------GSSEEEEECTTS-CCCE-EEGGGG
T ss_pred CCcCEEECCCC-ccCCcCcc-ccCCCCEEECCCC-CCCCcc-chhhhc--------cCCCCEEECCCC-CCCc-ccHHHH
Confidence 34555555443 22333222 2345666666663 333330 223333 456777777763 3443 222111
Q ss_pred hhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC
Q 008856 274 PATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG 353 (551)
Q Consensus 274 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 353 (551)
.. .+ ++|++|++++|.... ++ ....+++|++|++++ +.+..++..+..+++|++|++++| .++.+|.
T Consensus 165 ~~---~l------~~L~~L~L~~N~l~~-~~-~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 165 AA---SS------DTLEHLNLQYNFIYD-VK-GQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp GG---GT------TTCCEEECTTSCCCE-EE-CCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred hh---cc------CcCCEEECCCCcCcc-cc-cccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhh
Confidence 10 00 147888888775432 22 233478888888888 567777666777888888888884 6667776
Q ss_pred CCCCCCCccEEEEccCccc-cccccccccCCcccceeccc
Q 008856 354 GGLPCAKLTALEIYDCKRL-KALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l-~~~~~~~~~l~~L~~L~l~~ 392 (551)
....+++|+.|++++++.. ..++..+..+++|+.+++.+
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 6666678888888886543 35666777788888888875
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=162.49 Aligned_cols=125 Identities=20% Similarity=0.157 Sum_probs=62.9
Q ss_pred ccEEEeccCcchhh--hHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC--CCCCCCCccEE
Q 008856 289 LKSLRVRYCSKLES--IAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG--GGLPCAKLTAL 364 (551)
Q Consensus 289 L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L 364 (551)
|++|++++|..... .+..+..+++|++|++++ +.+..++..+..+++|++|++++| .+..++. ....+++|+.|
T Consensus 54 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp CSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEE
T ss_pred CCEEECCCCccCcccCcccccccccccCEEECCC-CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEE
Confidence 66666666643211 133444566666666666 445555555666666666666663 3333332 23334466666
Q ss_pred EEccCccccccccccccCCcccceeccc-cccc--cccC-CcCCCcceeEecCCc
Q 008856 365 EIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLS--LEED-GLPTNLHSLVIRGNM 415 (551)
Q Consensus 365 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~--l~~~-~~~~~L~~L~l~~~~ 415 (551)
++++|......+..+..+++|+.|++++ .+.. ++.. ..+++|++|++++|.
T Consensus 132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 6665433223334445555555555555 3322 2221 234445555554444
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=163.82 Aligned_cols=111 Identities=20% Similarity=0.251 Sum_probs=59.7
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
+++++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|+|++| .+..++.
T Consensus 75 ~~l~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~Ls~n-~i~~~~~~----~~~~l----~~L~~L~L~~n-~l~~~~~ 140 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMI---QADTFRHLHHLEVLQLGRN-SIRQIEVG----AFNGL----ASLNTLELFDN-WLTVIPS 140 (452)
T ss_dssp TTCSEEECCS-SCCCEE---CTTTTTTCTTCCEEECCSS-CCCEECTT----TTTTC----TTCCEEECCSS-CCSBCCT
T ss_pred CCccEEECcC-CcCceE---CHHHcCCCCCCCEEECCCC-ccCCcChh----hccCc----ccCCEEECCCC-cCCccCh
Confidence 4566666666 345544 4445566666666666664 35555442 24444 66666666664 3344432
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccc
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLP 185 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~ 185 (551)
.+..+++|++|+++++ .++.++. +..+++|++|++++|..+..++
T Consensus 141 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp TTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred hhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 3555666666666653 4444443 3445556666665555444443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=162.61 Aligned_cols=128 Identities=19% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++++.|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|+|++| .+..++.
T Consensus 64 ~~l~~L~L~~-n~i~~~---~~~~~~~l~~L~~L~Ls~n-~i~~i~~~----~~~~l----~~L~~L~L~~n-~l~~~~~ 129 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQII---KVNSFKHLRHLEILQLSRN-HIRTIEIG----AFNGL----ANLNTLELFDN-RLTTIPN 129 (440)
T ss_dssp TTCSEEECCS-CCCCEE---CTTTTSSCSSCCEEECCSS-CCCEECGG----GGTTC----SSCCEEECCSS-CCSSCCT
T ss_pred CCCcEEEccC-CcCCee---CHHHhhCCCCCCEEECCCC-cCCccChh----hccCC----ccCCEEECCCC-cCCeeCH
Confidence 5667777776 455655 5555666777777777764 36665542 34545 67777777764 4444443
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEec
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHG 203 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 203 (551)
.+..+++|++|+++++ .++.++. +..+++|++|++++|..+..++...+ ..+++|+.|++++
T Consensus 130 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-EGLSNLRYLNLAM 194 (440)
T ss_dssp TTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTCSSCCEEECTT
T ss_pred hHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchh-hcccccCeecCCC
Confidence 4666677777777663 4555554 44566666666666555554443211 1224444444444
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-17 Score=155.09 Aligned_cols=197 Identities=22% Similarity=0.237 Sum_probs=128.3
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|++++ +.+..+ +..+..+++|++|++++|..+..+ +.....+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 477777777755444445567777777777777 455555 556677777888887776545555 33444456777777
Q ss_pred EccCcccccc-ccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
+++|. ++.+ +..+.++++|++|++++ .+..++.. ..+++|++|++++|.. ....+.+ +..+++|++|++++
T Consensus 112 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~---~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 112 LDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERA---FRGLHSLDRLLLHQ 186 (285)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTT---TTTCTTCCEEECCS
T ss_pred CCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHH---hcCccccCEEECCC
Confidence 77754 4333 45567777788888777 66666543 3467788888877763 2222222 56677888888888
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
|. +..+.... +..+++|++|++++ +.++.++ ..+..+++|++|++++++
T Consensus 187 n~----l~~~~~~~------~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 187 NR----VAHVHPHA------FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SC----CCEECTTT------TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred Cc----ccccCHhH------ccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 73 44442221 23456788888888 5777766 446778888888888754
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-17 Score=157.28 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=41.0
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc--ccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP--SGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 366 (551)
|++|++++|.. ..++..+..+++|++|++++ +.+..++ ..+..+++|++|++++|......+.....+++|++|++
T Consensus 80 L~~L~Ls~n~i-~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 80 LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCEEECCSCSE-EEEEEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCcc-ccChhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 44444444432 22333344444455554444 2333332 23344444555554443222222222223334455554
Q ss_pred ccCcccc-ccccccccCCcccceeccc
Q 008856 367 YDCKRLK-ALPKGLHNLSTLQDLTIGG 392 (551)
Q Consensus 367 ~~c~~l~-~~~~~~~~l~~L~~L~l~~ 392 (551)
+++.... .+|..+..+++|+.|++++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred CCCccccccchhHHhhCcCCCEEECCC
Confidence 4432111 1344444444455554444
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-17 Score=159.67 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=83.5
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
|++|++++|......+ +..+++|++|++++ +.+..++ ..++|++|++++| .+..++... +++|+.|++++
T Consensus 60 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~-n~l~~l~----~~~~L~~L~l~~n-~l~~~~~~~--~~~L~~L~l~~ 129 (317)
T 3o53_A 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNN-NYVQELL----VGPSIETLHAANN-NISRVSCSR--GQGKKNIYLAN 129 (317)
T ss_dssp CCEEECTTSCCEEEEE--ETTCTTCCEEECCS-SEEEEEE----ECTTCCEEECCSS-CCSEEEECC--CSSCEEEECCS
T ss_pred CCEEECCCCcCCcchh--hhhcCCCCEEECcC-Ccccccc----CCCCcCEEECCCC-ccCCcCccc--cCCCCEEECCC
Confidence 5555555554322221 45555555555555 3343332 2255555555553 333332222 23555555555
Q ss_pred Ccccccc-ccccccCCcccceeccc-cccccccC---CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 369 CKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED---GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 369 c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
+ .++.+ +..+..+++|+.|++++ .+..++.. ..+++|++|++++|.... . +. ...+++|++|++++|.
T Consensus 130 N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~-~~----~~~l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 130 N-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-V-KG----QVVFAKLKTLDLSSNK 202 (317)
T ss_dssp S-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-E-EC----CCCCTTCCEEECCSSC
T ss_pred C-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-c-cc----ccccccCCEEECCCCc
Confidence 3 23333 22444555555555555 44333221 123555555555555221 1 11 2234555555555552
Q ss_pred CCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCC
Q 008856 444 DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 500 (551)
+..++... ..+++|++|++++ +.++.+|..+..+++|++|++++|
T Consensus 203 ----l~~l~~~~-------~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 203 ----LAFMGPEF-------QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp ----CCEECGGG-------GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTC
T ss_pred ----CCcchhhh-------cccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCC
Confidence 44444322 2344555555555 455555544555555555555553
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=165.83 Aligned_cols=244 Identities=14% Similarity=0.106 Sum_probs=147.7
Q ss_pred hhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhcc
Q 008856 113 QQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDT 192 (551)
Q Consensus 113 ~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (551)
+..+...+++|++|+|++|..-...|..+..+++|++|++++| .++..+++..+++|++|++++|. +..++..
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~----- 98 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG----- 98 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEEC-----
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCCC-----
Confidence 3333333357777777775332233456667777777777764 45544446667777777777753 4444432
Q ss_pred CCCccEEEEecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCC
Q 008856 193 NSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNE 272 (551)
Q Consensus 193 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 272 (551)
++|+.|++++|. ++.++.. .+++|+.|+++++ .++.+ .|..+.. +++|++|++++ +.++. .+...
T Consensus 99 -~~L~~L~L~~N~-l~~~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~--------l~~L~~L~Ls~-N~l~~-~~~~~ 163 (487)
T 3oja_A 99 -PSIETLHAANNN-ISRVSCS-RGQGKKNIYLANN-KITML-RDLDEGC--------RSRVQYLDLKL-NEIDT-VNFAE 163 (487)
T ss_dssp -TTCCEEECCSSC-CCCEEEC-CCSSCEEEECCSS-CCCSG-GGBCGGG--------GSSEEEEECTT-SCCCE-EEGGG
T ss_pred -CCcCEEECcCCc-CCCCCcc-ccCCCCEEECCCC-CCCCC-CchhhcC--------CCCCCEEECCC-CCCCC-cChHH
Confidence 567777777643 3343332 3467788887774 34433 0334444 55688888777 34443 22111
Q ss_pred chhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCC
Q 008856 273 LPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFP 352 (551)
Q Consensus 273 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 352 (551)
+.. .+ ++|++|++++|..... + ....+++|+.|++++ +.+..+|..+..+++|+.|++++ +.+..+|
T Consensus 164 l~~---~l------~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp 230 (487)
T 3oja_A 164 LAA---SS------DTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIE 230 (487)
T ss_dssp GGG---GT------TTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEEC
T ss_pred Hhh---hC------CcccEEecCCCccccc-c-ccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccc
Confidence 110 11 1488888888864332 2 234578888888888 56777766677788888888888 4566677
Q ss_pred CCCCCCCCccEEEEccCccc-cccccccccCCcccceecc
Q 008856 353 GGGLPCAKLTALEIYDCKRL-KALPKGLHNLSTLQDLTIG 391 (551)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~l~~L~~L~l~ 391 (551)
.....+++|+.|++++|+.. ..+|.++..+++|+.+++.
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66556668888888885533 2556666777777777765
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.6e-17 Score=150.49 Aligned_cols=200 Identities=16% Similarity=0.090 Sum_probs=127.3
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|+++++..++.++. .+..+++|++|++++|+.++.++. ....+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 577777777654333334566667777777776333555532 455566666666666445554443 222334555555
Q ss_pred EccCccccccccccccCCcccceeccccccccccCCcCCCcc---eeEecCCchhhhhhhhhccccccCCCcc-EEEEec
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGGALLSLEEDGLPTNLH---SLVIRGNMEIWKSMIEWGRGFHRFSSLR-HLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~~l~~l~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~ 441 (551)
++++ .+..+|....+++|+ +|++++|+.+....+.. +..+++|+ +|++++
T Consensus 112 l~~n-----------------------~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 112 IFNT-----------------------GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA---FQGLCNETLTLKLYN 165 (239)
T ss_dssp EEEE-----------------------CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTT---TTTTBSSEEEEECCS
T ss_pred CCCC-----------------------CCccccccccccccccccEEECCCCcchhhcCccc---ccchhcceeEEEcCC
Confidence 5552 333333333334444 88888884454443333 67888999 999998
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCC-CCcCEEEEcCCCCccccCCCCCccccceEe
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDL-RNLTELVLRGCPKLKYFPEKGLPSSLLELW 519 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 519 (551)
|. +..+|... +.. ++|++|+++++..++.++ ..+..+ ++|++|++++ ++++.+|.. .+++|+.|.
T Consensus 166 n~----l~~i~~~~------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~ 232 (239)
T 2xwt_C 166 NG----FTSVQGYA------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELI 232 (239)
T ss_dssp CC----CCEECTTT------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEE
T ss_pred CC----CcccCHhh------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceee
Confidence 83 77777644 223 689999999943588886 557778 9999999999 678888876 567999999
Q ss_pred ecCCchH
Q 008856 520 ISGCPLI 526 (551)
Q Consensus 520 i~~c~~l 526 (551)
+.+++.+
T Consensus 233 l~~~~~l 239 (239)
T 2xwt_C 233 ARNTWTL 239 (239)
T ss_dssp CTTC---
T ss_pred ccCccCC
Confidence 9988753
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=152.76 Aligned_cols=171 Identities=24% Similarity=0.308 Sum_probs=76.0
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l 366 (551)
|++|++++|......+..+..+++|++|+++++..+..+ +..+..+++|++|++++| .+..+ +.....+++|++|++
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 136 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYL 136 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEEC
Confidence 444444444332222334444555555555553224443 334444555555555553 22222 222223345555555
Q ss_pred ccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 367 YDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 367 ~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+++ .++.++ ..+.++++|+.|++++ .+..++.. ..+++|++|++++|.... ..+.+ +..+++|+.|++++|
T Consensus 137 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~---~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 137 QDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHA---FRDLGRLMTLYLFAN 211 (285)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTT---TTTCTTCCEEECCSS
T ss_pred CCC-cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc-cCHhH---ccCcccccEeeCCCC
Confidence 542 233333 2244555555555555 44444432 234555555555555221 21221 445555666666555
Q ss_pred CCCCccccccccccccccccccccccccccccc
Q 008856 443 DDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
. +..++... +..+++|+.|++++
T Consensus 212 ~----l~~~~~~~------~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 212 N----LSALPTEA------LAPLRALQYLRLND 234 (285)
T ss_dssp C----CSCCCHHH------HTTCTTCCEEECCS
T ss_pred c----CCcCCHHH------cccCcccCEEeccC
Confidence 2 44444321 12345555666555
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=163.68 Aligned_cols=184 Identities=15% Similarity=0.106 Sum_probs=83.9
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
|++|++++|......+ +..+++|++|++++ +.+..++. .++|++|++++| .+..++... +++|+.|++++
T Consensus 60 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~-N~l~~l~~----~~~L~~L~L~~N-~l~~~~~~~--l~~L~~L~L~~ 129 (487)
T 3oja_A 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNN-NYVQELLV----GPSIETLHAANN-NISRVSCSR--GQGKKNIYLAN 129 (487)
T ss_dssp CCEEECTTSCCEEEEE--CTTCTTCCEEECCS-SEEEEEEE----CTTCCEEECCSS-CCCCEEECC--CSSCEEEECCS
T ss_pred CCEEEeeCCCCCCCcc--cccCCCCCEEEecC-CcCCCCCC----CCCcCEEECcCC-cCCCCCccc--cCCCCEEECCC
Confidence 5556665554322222 55555555555555 33443321 255555555553 333332221 23555555555
Q ss_pred CccccccccccccCCcccceeccc-cccccccC---CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCC
Q 008856 369 CKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED---GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDD 444 (551)
Q Consensus 369 c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 444 (551)
|..-...|..+.++++|+.|++++ .+..++.. ..+++|++|++++|.... . +. ...+++|+.|++++|.
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~-~~----~~~l~~L~~L~Ls~N~- 202 (487)
T 3oja_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-V-KG----QVVFAKLKTLDLSSNK- 202 (487)
T ss_dssp SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-E-EC----CCCCTTCCEEECCSSC-
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-c-cc----cccCCCCCEEECCCCC-
Confidence 332222233445555555555555 33332211 124555555555555221 1 11 2234555555555552
Q ss_pred CCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCC
Q 008856 445 DTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 500 (551)
+..+|... ..+++|+.|++++ +.+..+|..+..+++|+.|++++|
T Consensus 203 ---l~~~~~~~-------~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 203 ---LAFMGPEF-------QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp ---CCEECGGG-------GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTC
T ss_pred ---CCCCCHhH-------cCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCC
Confidence 44444322 1344555555555 455555544455555555555553
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-17 Score=163.64 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=113.9
Q ss_pred CCCCCcEEEEecCCCcc-cccccc--cCCCCcceEEecCCCCCccCCCCCCC-----CCCccEEEEccCccccccc-ccc
Q 008856 309 NNTSLETISIYNCENLK-ILPSGL--HKLHQLREISIGSCGNLVSFPGGGLP-----CAKLTALEIYDCKRLKALP-KGL 379 (551)
Q Consensus 309 ~l~~L~~L~l~~~~~l~-~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~-----~~~L~~L~l~~c~~l~~~~-~~~ 379 (551)
.+++|++|+++++ .+. .+|..+ ..+++|++|++++| .+..+|..... +++|++|+++++. ++.++ ..+
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence 4566666666663 333 345444 55666666666663 33333321111 1467777776643 44443 556
Q ss_pred ccCCcccceeccc-cccc----cccC--CcCCCcceeEecCCchhh--hhhhhhccccccCCCccEEEEeccCCCCcccc
Q 008856 380 HNLSTLQDLTIGG-ALLS----LEED--GLPTNLHSLVIRGNMEIW--KSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVS 450 (551)
Q Consensus 380 ~~l~~L~~L~l~~-~l~~----l~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 450 (551)
.++++|+.|++++ .+.. .+.. ..+++|++|++++|.... ...... +..+++|++|++++|. +..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~N~----l~~ 242 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL---AAARVQLQGLDLSHNS----LRD 242 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH---HHTTCCCSEEECTTSC----CCS
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH---HhcCCCCCEEECCCCc----CCc
Confidence 6777777777766 3221 1122 346777777777776331 111111 4566788888888773 444
Q ss_pred cc-cccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeecCCc
Q 008856 451 FP-LEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 451 ~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
.+ ... +..+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|.-..+++|++|++++++
T Consensus 243 ~~~~~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 243 AAGAPS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCSC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred ccchhh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 33 111 12457788888887 67777775554 7788888887 467776654446778888887764
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=142.94 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=97.5
Q ss_pred CccEEEeccCcchhhh-HhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCCCCCCCCCcc---
Q 008856 288 SLKSLRVRYCSKLESI-AERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLT--- 362 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~--- 362 (551)
+|++|++++|..++.+ +..+..+++|++|++++|+.++.++ ..+..+++|++|++++| .++.+|. ...+++|+
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~ 133 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFF 133 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEE
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-ccccccccccc
Confidence 3777788777533333 3467788889999998867777774 45677888999999884 5666765 44455777
Q ss_pred EEEEccCcccccccc-ccccCCccc-ceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccC-CCccEE
Q 008856 363 ALEIYDCKRLKALPK-GLHNLSTLQ-DLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRF-SSLRHL 437 (551)
Q Consensus 363 ~L~l~~c~~l~~~~~-~~~~l~~L~-~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L 437 (551)
.|++++++.++.++. .+.++++|+ .|++++ .+..++.. ...++|++|++++|+.+....+.. +..+ ++|+.|
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~---~~~l~~~L~~L 210 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA---FGGVYSGPSLL 210 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTT---TTTCSBCCSEE
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHH---hhccccCCcEE
Confidence 899988657777764 367788888 888877 66666553 122466666666664333222222 3444 555555
Q ss_pred EEecc
Q 008856 438 TIDGC 442 (551)
Q Consensus 438 ~l~~~ 442 (551)
++++|
T Consensus 211 ~l~~N 215 (239)
T 2xwt_C 211 DVSQT 215 (239)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 55554
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.2e-15 Score=146.38 Aligned_cols=218 Identities=20% Similarity=0.233 Sum_probs=152.5
Q ss_pred CccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhH-hhhcCCCCCcEEEEecCCCcccc-cc
Q 008856 252 LLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIA-ERLDNNTSLETISIYNCENLKIL-PS 329 (551)
Q Consensus 252 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~-~~ 329 (551)
++++|++++ +.++. ++.+.|.. + ++|++|++++|...+.++ ..|.+++++..+.+.+++.+..+ +.
T Consensus 31 ~l~~L~Ls~-N~i~~-i~~~~f~~----l------~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 31 NAIELRFVL-TKLRV-IQKGAFSG----F------GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCSEEEEES-CCCSE-ECTTSSTT----C------TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCEEEccC-CcCCC-cCHHHHcC----C------CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 566666666 45555 43322211 1 137888888776655443 35677888777666665778777 55
Q ss_pred cccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEccCcccccccc-ccccC-Ccccceeccc-cccccccC-CcCC
Q 008856 330 GLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALPK-GLHNL-STLQDLTIGG-ALLSLEED-GLPT 404 (551)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~-~~~~l-~~L~~L~l~~-~l~~l~~~-~~~~ 404 (551)
.+..+++|++|++++| .+..++. ......++..+++.+++.++.++. .+..+ ..++.|++++ .++.++.. ....
T Consensus 99 ~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177 (350)
T ss_dssp SBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred hhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence 6777888999988884 5555554 233334677888888777877764 34444 4578888888 78877765 3456
Q ss_pred CcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhh
Q 008856 405 NLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS 484 (551)
Q Consensus 405 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 484 (551)
+|+++++.++..+..+.... +..+++|++|++++|. +..+|... +.+|+.|++.++++++.+|
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~---f~~l~~L~~LdLs~N~----l~~lp~~~---------~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDV---FHGASGPVILDISRTR----IHSLPSYG---------LENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTT---TTTEECCSEEECTTSC----CCCCCSSS---------CTTCCEEECTTCTTCCCCC-
T ss_pred chhHHhhccCCcccCCCHHH---hccCcccchhhcCCCC----cCccChhh---------hccchHhhhccCCCcCcCC-
Confidence 88899998777676555443 6788999999999984 88888743 4678888888888888888
Q ss_pred hccCCCCcCEEEEcC
Q 008856 485 SIIDLRNLTELVLRG 499 (551)
Q Consensus 485 ~~~~l~~L~~L~l~~ 499 (551)
.+.+|++|+.+++.+
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 577899999999865
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-16 Score=152.02 Aligned_cols=247 Identities=18% Similarity=0.164 Sum_probs=173.4
Q ss_pred CCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhh--hccccCCCCCccEEEe
Q 008856 217 SSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLE--SLEVGNLPPSLKSLRV 294 (551)
Q Consensus 217 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~--~l~~~~~~~~L~~L~l 294 (551)
++|+.++++++. + .+ |..+.. .++.|++++ +.++. . .+|..+. .+...+ .++|++|++
T Consensus 43 ~~L~~l~l~~n~-l-~~--p~~~~~----------~L~~L~L~~-n~l~~-~---~~~~~~~~~~~~~~~-l~~L~~L~L 102 (312)
T 1wwl_A 43 RSLEYLLKRVDT-E-AD--LGQFTD----------IIKSLSLKR-LTVRA-A---RIPSRILFGALRVLG-ISGLQELTL 102 (312)
T ss_dssp EECTTHHHHCCT-T-CC--CHHHHH----------HHHHCCCCE-EEEEE-E---ECBHHHHHHHHHHHT-TSCCCEEEE
T ss_pred CCceeEeecccc-c-cc--HHHHHH----------HHhhccccc-ccccC-C---CcCHHHHHHHHHhcC-cCCccEEEc
Confidence 456777777643 3 44 776665 489998888 33332 1 1222111 000001 126999999
Q ss_pred ccCcchhhhHhhh--cCCCCCcEEEEecCCCcccccccccCC-----CCcceEEecCCCCCccCC-CCCCCCCCccEEEE
Q 008856 295 RYCSKLESIAERL--DNNTSLETISIYNCENLKILPSGLHKL-----HQLREISIGSCGNLVSFP-GGGLPCAKLTALEI 366 (551)
Q Consensus 295 ~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l 366 (551)
++|.....++..+ ..+++|++|++++ +.+..+|..+..+ ++|++|++++| .+..++ .....+++|++|++
T Consensus 103 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 103 ENLEVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp EEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEEC
T ss_pred cCCcccchhHHHHHHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEEC
Confidence 9997666666655 8899999999999 5676666666655 89999999995 455555 45556779999999
Q ss_pred ccCccccc--ccccc--ccCCcccceeccc-ccccccc---C--CcCCCcceeEecCCchhhhhhhhhccccccCCCccE
Q 008856 367 YDCKRLKA--LPKGL--HNLSTLQDLTIGG-ALLSLEE---D--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRH 436 (551)
Q Consensus 367 ~~c~~l~~--~~~~~--~~l~~L~~L~l~~-~l~~l~~---~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 436 (551)
++|..... ++..+ .++++|+.|++++ .+..++. . ..+++|++|++++|.......... +..+++|++
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~ 257 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS---CDWPSQLNS 257 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC---CCCCTTCCE
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh---hhhcCCCCE
Confidence 99754333 23334 7899999999999 6664432 1 245899999999998443221111 456789999
Q ss_pred EEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCcc
Q 008856 437 LTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLK 504 (551)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~ 504 (551)
|++++|. +..+|... . ++|++|++++ +.++.+|. +..+++|++|+++++ .++
T Consensus 258 L~Ls~N~----l~~ip~~~--------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 258 LNLSFTG----LKQVPKGL--------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN-PFL 309 (312)
T ss_dssp EECTTSC----CSSCCSSC--------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTC-TTT
T ss_pred EECCCCc----cChhhhhc--------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCC-CCC
Confidence 9999994 77888755 3 7999999999 79998876 788999999999995 444
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=140.47 Aligned_cols=192 Identities=19% Similarity=0.160 Sum_probs=136.8
Q ss_pred cCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc
Q 008856 250 SYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS 329 (551)
Q Consensus 250 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 329 (551)
+++++++++++ +.++. +|....+ +++.|++++|......+..+..+++|+.|++++ +.+..++.
T Consensus 9 l~~l~~l~~~~-~~l~~-ip~~~~~-------------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~ 72 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTA-LPPDLPK-------------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV 72 (290)
T ss_dssp STTCCEEECTT-SCCSS-CCSCCCT-------------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC
T ss_pred cCCccEEECCC-CCCCc-CCCCCCC-------------CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccC
Confidence 34577777766 45555 4433222 588999998876555567788899999999998 66777754
Q ss_pred cccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccc-cccccCCcccceeccc-cccccccC--CcCCC
Q 008856 330 GLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTN 405 (551)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~ 405 (551)
. ..+++|++|++++ +.+..+|.....+++|+.|++++ ++++.++ ..+.++++|+.|++++ .+..++.. ..+++
T Consensus 73 ~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp C-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred C-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC
Confidence 3 6788999999998 46777777666677899999988 4566665 5578888888888888 77777664 34678
Q ss_pred cceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccccccccccc
Q 008856 406 LHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 406 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
|++|++++|+. ....+.. +..+++|+.|++++|. +..+|... ...++|+.+++++
T Consensus 150 L~~L~L~~N~l-~~l~~~~---~~~l~~L~~L~L~~N~----l~~ip~~~-------~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 150 LEKLSLANNNL-TELPAGL---LNGLENLDTLLLQENS----LYTIPKGF-------FGSHLLPFAFLHG 204 (290)
T ss_dssp CCEEECTTSCC-SCCCTTT---TTTCTTCCEEECCSSC----CCCCCTTT-------TTTCCCSEEECCS
T ss_pred CCEEECCCCcC-CccCHHH---hcCcCCCCEEECCCCc----CCccChhh-------cccccCCeEEeCC
Confidence 88888888873 3333222 5677888888888873 66777654 1345778888876
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-15 Score=143.26 Aligned_cols=192 Identities=17% Similarity=0.191 Sum_probs=141.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEI 366 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 366 (551)
++++++++++. ++.++..+ .++++.|++++ +.+..+ +..+..+++|++|++++| .++.++.. ..+++|+.|++
T Consensus 11 ~l~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCDKRN-LTALPPDL--PKDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTTSC-CSSCCSCC--CTTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred CccEEECCCCC-CCcCCCCC--CCCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence 58899998874 44454433 36899999998 556666 567888999999999984 56666554 45568999999
Q ss_pred ccCccccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 367 YDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 367 ~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
++ +.++.+|..+..+++|+.|++++ .+..++.. ..+++|++|++++|... ...+.. +..+++|+.|++++|.
T Consensus 85 s~-N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 85 SH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGL---LTPTPKLEKLSLANNN 159 (290)
T ss_dssp CS-SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTT---TTTCTTCCEEECTTSC
T ss_pred CC-CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhh---cccccCCCEEECCCCc
Confidence 98 56778888888888999999988 77777653 45678888888888733 232222 5677888888888873
Q ss_pred CCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 444 DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
+..++... +..+++|+.|++++ +.++.+|.++...++|+++++++++
T Consensus 160 ----l~~l~~~~------~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 ----LTELPAGL------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ----CSCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ----CCccCHHH------hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 66776643 23467888888888 6788888777777788888888755
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=142.73 Aligned_cols=195 Identities=17% Similarity=0.176 Sum_probs=132.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCC-CCCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFP-GGGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|++++ +.+..+ +..+..+++|++|++++| .+..++ .....+++|+.|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCC-CcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 689999988865554455788889999999988 456666 346778889999999885 444444 3445567888888
Q ss_pred EccCcccccccc-ccccCCcccceeccc-cccc--cccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCcc----E
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG-ALLS--LEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLR----H 436 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~----~ 436 (551)
++++. ++.++. .+.++++|+.|++++ .+.. ++.. ..+++|++|++++|.... ..+.. +..+++|+ .
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~---~~~l~~L~~l~l~ 181 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTD---LRVLHQMPLLNLS 181 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGG---GHHHHTCTTCCEE
T ss_pred CCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHH---hhhhhhcccccee
Confidence 88854 444443 577888888888887 5555 3332 456788888888887332 22222 33444444 7
Q ss_pred EEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhh-hccCCCCcCEEEEcCCC
Q 008856 437 LTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS-SIIDLRNLTELVLRGCP 501 (551)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~ 501 (551)
|++++|. +..++... + ...+|++|++++ +.++.+|. .+..+++|++|++++++
T Consensus 182 L~ls~n~----l~~~~~~~------~-~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLNP----MNFIQPGA------F-KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSC----CCEECTTS------S-CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCCCc----ccccCccc------c-CCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 8888873 66665533 1 233788888888 57777764 35678888888888744
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=137.03 Aligned_cols=193 Identities=23% Similarity=0.334 Sum_probs=122.5
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCCCC-CCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPGGG-LPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~ 365 (551)
+.+.++++++. ++.++..+ .+++++|++++ +.+..++ ..+..+++|++|++++| .++.++... ..+++|++|+
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNI--PADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCC--CTTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCC-CCccCCCC--CCCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEE
Confidence 36778877764 33444323 25788888888 5566664 36777888888888884 555665533 4456888888
Q ss_pred EccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
++++ .++.++ ..+..+++|+.|++++ .+..++.. ..+++|++|++++|... ...+.. +..+++|++|++++
T Consensus 92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~---~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV---FDKLTSLKELRLYN 166 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT---TTTCTTCCEEECCS
T ss_pred CCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhH---ccCCcccceeEecC
Confidence 8874 455554 3456777888888877 66666543 34677777777777632 222221 55677777777777
Q ss_pred cCCCCcccccccccccccccccccccccccccccCCChhhhhh-hccCCCCcCEEEEcCCC
Q 008856 442 CDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS-SIIDLRNLTELVLRGCP 501 (551)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~ 501 (551)
|. +..++... +..+++|++|++++ +.++.+|. .+..+++|++|++++++
T Consensus 167 n~----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 NQ----LKRVPEGA------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SC----CSCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc----CcEeChhH------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 63 55555432 22456777777777 56666653 35567777777777654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=137.80 Aligned_cols=194 Identities=22% Similarity=0.310 Sum_probs=149.1
Q ss_pred CCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEEccCccccccc-cccccCCcccc
Q 008856 311 TSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEIYDCKRLKALP-KGLHNLSTLQD 387 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~ 387 (551)
++|++|++++ +.+..++ ..+..+++|++|++++| .+..++. ....+++|+.|+++++. ++.++ ..+.++++|+.
T Consensus 28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCC-CcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence 5799999999 6677774 47888999999999996 5666554 45556799999999954 55554 67899999999
Q ss_pred eeccc-ccccccc--CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccc
Q 008856 388 LTIGG-ALLSLEE--DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRL 464 (551)
Q Consensus 388 L~l~~-~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (551)
|++++ .+..++. ...+++|++|++++|.......+.+ +..+++|++|++++|. +..++... +..
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~---~~~l~~L~~L~Ls~N~----l~~~~~~~------~~~ 171 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSSNK----IQSIYCTD------LRV 171 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG---GGGCTTCCEEECCSSC----CCEECGGG------GHH
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchh---hccCCCCCEEECCCCC----CCcCCHHH------hhh
Confidence 99999 7776665 3567999999999998443222333 7789999999999994 66665432 123
Q ss_pred ccccc----ccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCC--CccccceEeecC
Q 008856 465 PTTLT----SLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKG--LPSSLLELWISG 522 (551)
Q Consensus 465 ~~~L~----~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~ 522 (551)
+++|+ +|++++ +.++.++.......+|++|++++| +++.++... ..++|++|++++
T Consensus 172 l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 172 LHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp HHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred hhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence 45666 788998 788888866666679999999995 588887753 368999999994
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-15 Score=142.77 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=151.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|++|++++|.. ..++ .+..+++|+.|++++ +.+..++. +..+++|++|++++| .++.++. ...+++|++|+++
T Consensus 42 ~L~~L~l~~~~i-~~l~-~~~~l~~L~~L~L~~-n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGV-TTIE-GVQYLNNLIGLELKD-NQITDLAP-LKNLTKITELELSGN-PLKNVSA-IAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCC-CCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG-GTTCTTCCEEECT
T ss_pred CcCEEEeeCCCc-cCch-hhhccCCCCEEEccC-CcCCCChh-HccCCCCCEEEccCC-cCCCchh-hcCCCCCCEEECC
Confidence 499999999854 3343 578899999999999 56777765 888999999999995 4666653 3445699999999
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+| .++.++. +..+++|+.|++++ .+..++....+++|++|++++|.... ..+ +..+++|++|++++|.
T Consensus 116 ~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~l~~n~--- 184 (308)
T 1h6u_A 116 ST-QITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTP-----LANLSKLTTLKADDNK--- 184 (308)
T ss_dssp TS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSC---
T ss_pred CC-CCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC-Chh-----hcCCCCCCEEECCCCc---
Confidence 95 4666654 88999999999999 77777776678999999999997432 221 6688999999999984
Q ss_pred cccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCC
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
+..++.- ..+++|++|++++ +.+..++ .+..+++|++|++++| .++..|.
T Consensus 185 -l~~~~~l--------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 185 -ISDISPL--------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp -CCCCGGG--------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred -cCcChhh--------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCC-eeecCCe
Confidence 6666542 2678999999999 6888887 4788999999999995 4666544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-14 Score=140.66 Aligned_cols=218 Identities=20% Similarity=0.166 Sum_probs=165.1
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
++++|++++|.........|.++++|++|+++++...+.++ ..+..+++++++...+++.+..++. ....+++|+.|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 69999999996544334578999999999999955456664 4567789988877777788888865 445677999999
Q ss_pred EccCcccccccc-ccccCCcccceeccc--cccccccCC---cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEE
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG--ALLSLEEDG---LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTI 439 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~--~l~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 439 (551)
+++ ++++.++. .+.+..++..|++.+ .+..++... ....++.|++++|.. ..+... .....+|+++++
T Consensus 111 l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~~~----~f~~~~L~~l~l 184 (350)
T 4ay9_X 111 ISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNS----AFNGTQLDELNL 184 (350)
T ss_dssp EEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTT----SSTTEEEEEEEC
T ss_pred ccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCChh----hccccchhHHhh
Confidence 998 45666654 345666777888866 677776542 235789999999984 323222 234568999999
Q ss_pred eccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEe
Q 008856 440 DGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELW 519 (551)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 519 (551)
.++ .. +..+|.+. |..+++|++|++++ ++++.+|. ..+.+|++|.+.+|++++.+|....+++|+.++
T Consensus 185 ~~~-n~--l~~i~~~~------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~ 252 (350)
T 4ay9_X 185 SDN-NN--LEELPNDV------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252 (350)
T ss_dssp TTC-TT--CCCCCTTT------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEE
T ss_pred ccC-Cc--ccCCCHHH------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCc
Confidence 875 25 78888754 45788999999999 79999984 348899999999999999999866678999999
Q ss_pred ecCC
Q 008856 520 ISGC 523 (551)
Q Consensus 520 i~~c 523 (551)
+...
T Consensus 253 l~~~ 256 (350)
T 4ay9_X 253 LTYP 256 (350)
T ss_dssp CSCH
T ss_pred CCCC
Confidence 8753
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=141.90 Aligned_cols=193 Identities=15% Similarity=0.155 Sum_probs=142.8
Q ss_pred cCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc
Q 008856 250 SYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS 329 (551)
Q Consensus 250 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 329 (551)
+++|++|++++| .++. ++. +..+. +|++|++++|.. ..++. +..+++|++|++++ +.+..++
T Consensus 40 l~~L~~L~l~~~-~i~~-l~~------~~~l~------~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~-n~l~~~~- 101 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTT-IEG------VQYLN------NLIGLELKDNQI-TDLAP-LKNLTKITELELSG-NPLKNVS- 101 (308)
T ss_dssp HHTCCEEECTTS-CCCC-CTT------GGGCT------TCCEEECCSSCC-CCCGG-GTTCCSCCEEECCS-CCCSCCG-
T ss_pred cCCcCEEEeeCC-CccC-chh------hhccC------CCCEEEccCCcC-CCChh-HccCCCCCEEEccC-CcCCCch-
Confidence 446999999885 4554 221 12211 599999999854 34444 88899999999999 5577764
Q ss_pred cccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcce
Q 008856 330 GLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHS 408 (551)
Q Consensus 330 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~ 408 (551)
.+..+++|++|++++| .++.++. ...+++|++|++++| .++.++. +..+++|+.|++++ .+..++....+++|++
T Consensus 102 ~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 177 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177 (308)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCE
Confidence 5788999999999995 5666654 445569999999985 5666655 78899999999998 7777776667889999
Q ss_pred eEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh
Q 008856 409 LVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS 483 (551)
Q Consensus 409 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 483 (551)
|++++|.... ..+ +..+++|++|++++|. +..++.- ..+++|+.|++++ +.+...|
T Consensus 178 L~l~~n~l~~-~~~-----l~~l~~L~~L~L~~N~----l~~~~~l--------~~l~~L~~L~l~~-N~i~~~~ 233 (308)
T 1h6u_A 178 LKADDNKISD-ISP-----LASLPNLIEVHLKNNQ----ISDVSPL--------ANTSNLFIVTLTN-QTITNQP 233 (308)
T ss_dssp EECCSSCCCC-CGG-----GGGCTTCCEEECTTSC----CCBCGGG--------TTCTTCCEEEEEE-EEEECCC
T ss_pred EECCCCccCc-Chh-----hcCCCCCCEEEccCCc----cCccccc--------cCCCCCCEEEccC-CeeecCC
Confidence 9999998432 221 5688999999999983 6666532 3678999999998 6776665
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=140.99 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=138.4
Q ss_pred ccEEEeccCcchhhh-Hh--hhcCCCCCcEEEEecCCCcccccccc--cCCCCcceEEecCCCCCccCCC----CCCCCC
Q 008856 289 LKSLRVRYCSKLESI-AE--RLDNNTSLETISIYNCENLKILPSGL--HKLHQLREISIGSCGNLVSFPG----GGLPCA 359 (551)
Q Consensus 289 L~~L~l~~~~~~~~~-~~--~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~----~~~~~~ 359 (551)
++.+.+.++...... .. .+..+++|++|++++|......|..+ ..+++|++|++++|..-...+. ....++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 566666655432211 11 12234668888888854333445555 6778888888888543322221 112355
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccc---cccC---CcCCCcceeEecCCchhhhhhhhhccccccCC
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLS---LEED---GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFS 432 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~---l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 432 (551)
+|++|++++|......+..+.++++|++|++++ .+.. ++.. ..+++|++|++++|..- .........+..++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCC
Confidence 888888887543333345677888888888887 4332 2221 35678889999888742 11111000145778
Q ss_pred CccEEEEeccCCCCccccc-ccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCC
Q 008856 433 SLRHLTIDGCDDDTMMVSF-PLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGL 511 (551)
Q Consensus 433 ~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 511 (551)
+|++|++++|. +... |.... ....+++|++|++++ +.++.+|..+ +++|++|++++ ++++.+|....
T Consensus 225 ~L~~L~Ls~N~----l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~-N~l~~~~~~~~ 292 (310)
T 4glp_A 225 QPHSLDLSHNS----LRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSS-NRLNRAPQPDE 292 (310)
T ss_dssp CCSSEECTTSC----CCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCS-CCCCSCCCTTS
T ss_pred CCCEEECCCCC----CCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCC-CcCCCCchhhh
Confidence 99999999883 5554 43321 111247899999988 7888888655 37899999998 56777766555
Q ss_pred ccccceEeecCCc
Q 008856 512 PSSLLELWISGCP 524 (551)
Q Consensus 512 ~~~L~~L~i~~c~ 524 (551)
+++|+.|++++++
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 6889999998875
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-14 Score=132.95 Aligned_cols=170 Identities=21% Similarity=0.284 Sum_probs=83.0
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccccc-ccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 366 (551)
+++|++++|......+..+..+++|++|++++ +.+..++.. +..+++|++|++++| .+..++. ....+++|++|++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEEC
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEEC
Confidence 55555555543332233455555555555555 344444332 244555555555553 3334433 2233445555655
Q ss_pred ccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 367 YDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 367 ~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+++ .++.++ ..+.++++|+.|++++ .+..++.. ..+++|++|++++|.... ..+.. +..+++|++|++++|
T Consensus 117 ~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~---~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 117 DRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGA---FDKLTELKTLKLDNN 191 (270)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTT---TTTCTTCCEEECCSS
T ss_pred CCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-eChhH---hccCCCcCEEECCCC
Confidence 553 233333 2345556666666655 55554442 334566666666665222 22211 445566666666666
Q ss_pred CCCCccccccccccccccccccccccccccccc
Q 008856 443 DDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
. +..++... +..+++|+.|++++
T Consensus 192 ~----l~~~~~~~------~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 192 Q----LKRVPEGA------FDSLEKLKMLQLQE 214 (270)
T ss_dssp C----CSCCCTTT------TTTCTTCCEEECCS
T ss_pred c----CCcCCHHH------hccccCCCEEEecC
Confidence 2 44554432 12345666666665
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-16 Score=151.44 Aligned_cols=57 Identities=21% Similarity=0.390 Sum_probs=27.1
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccc--ccccccCCCCcceEEecCC
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKI--LPSGLHKLHQLREISIGSC 345 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~~ 345 (551)
|++|++++|......+..+..+++|++|++++|..++. ++..+..+++|++|++++|
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 55555555543334444444555555555555433332 2333444555555555554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-14 Score=140.75 Aligned_cols=195 Identities=18% Similarity=0.168 Sum_probs=104.9
Q ss_pred ccEEEeccCcchhhhHhhh--cCCCCCcEEEEecCCCcccc-c----ccccCCCCcceEEecCCCCCccCC-CCCCCCCC
Q 008856 289 LKSLRVRYCSKLESIAERL--DNNTSLETISIYNCENLKIL-P----SGLHKLHQLREISIGSCGNLVSFP-GGGLPCAK 360 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~-~----~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~ 360 (551)
|++|++++|......+..+ ..+++|++|+++++ .+... + ..+..+++|++|++++|. +..++ .....+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTT
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCC
Confidence 4444444444333333333 44455555555552 22221 1 112234555555555532 22222 22233445
Q ss_pred ccEEEEccCccccc--cc--cccccCCcccceeccc-cccccccC-----CcCCCcceeEecCCchhhhhhhhhcccccc
Q 008856 361 LTALEIYDCKRLKA--LP--KGLHNLSTLQDLTIGG-ALLSLEED-----GLPTNLHSLVIRGNMEIWKSMIEWGRGFHR 430 (551)
Q Consensus 361 L~~L~l~~c~~l~~--~~--~~~~~l~~L~~L~l~~-~l~~l~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 430 (551)
|++|++++|..... ++ ..+.++++|++|++++ .+..++.. ..+++|++|++++|.... ..+.....+..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccC
Confidence 55555555432211 11 1234566666666666 44444331 235677777777777333 22221101223
Q ss_pred CCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 431 FSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 431 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
+++|++|++++|. +..+|... +++|++|++++ |.++.+|. +..+++|++|++++++
T Consensus 250 ~~~L~~L~Ls~N~----l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAG----LEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSC----CCSCCSCC---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCC----CCchhhhh---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 4799999999884 77777644 37999999999 78888764 5778999999999954
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-14 Score=144.01 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=26.9
Q ss_pred ccEEEeccCcc-hhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCC
Q 008856 289 LKSLRVRYCSK-LESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSC 345 (551)
Q Consensus 289 L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~ 345 (551)
|++|++++|.. ....+..+..+++|++|++++|..+... ...+..+++|++|++++|
T Consensus 224 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 55555555542 2233334455555555555554322211 123444555555555554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-14 Score=143.50 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=39.1
Q ss_pred ccEEEeccCcch----hhhHhhhcCCCCCcEEEEecCCCccc-----cccccc--CCCCcceEEecCCCCCcc-----CC
Q 008856 289 LKSLRVRYCSKL----ESIAERLDNNTSLETISIYNCENLKI-----LPSGLH--KLHQLREISIGSCGNLVS-----FP 352 (551)
Q Consensus 289 L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~--~~~~L~~L~l~~~~~l~~-----l~ 352 (551)
|++|++++|... ..++..+..+++|++|++++|. +.. ++..+. .+++|++|++++|. +.. ++
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~ 295 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLK 295 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHH
Confidence 556666555442 3344455556666666666632 332 133332 25666666666642 222 33
Q ss_pred CCC-CCCCCccEEEEccCc
Q 008856 353 GGG-LPCAKLTALEIYDCK 370 (551)
Q Consensus 353 ~~~-~~~~~L~~L~l~~c~ 370 (551)
... ..+++|+.|++++|.
T Consensus 296 ~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHCTTCCEEECTTSB
T ss_pred HHHHhcCCCceEEEccCCc
Confidence 222 223466666666643
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-13 Score=127.24 Aligned_cols=145 Identities=26% Similarity=0.308 Sum_probs=71.4
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l 366 (551)
|++|++++|.... + ..+..+++|++|++++ +.+..++ ..+..+++|++|++++| .++.++.. ...+++|+.|++
T Consensus 65 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 65 VRYLALGGNKLHD-I-SALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CCEEECTTSCCCC-C-GGGTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEECCCCCCCC-c-hhhcCCCCCCEEECCC-CccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEEC
Confidence 5555555553222 1 2345555666666655 3344442 23455566666666653 33333332 233445666666
Q ss_pred ccCcccccccc-ccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 367 YDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 367 ~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++| .++.++. .+.++++|+.|++++ .+..++.. ..+++|++|++++|... ...+.. +..+++|+.|++++|
T Consensus 141 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 141 AHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGV---FDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTT---TTTCTTCCEEECCSS
T ss_pred CCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-ccCHHH---HhCCcCCCEEEccCC
Confidence 553 3444432 235555666666655 44444432 23456666666666522 222221 455666666666665
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-14 Score=146.64 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=80.1
Q ss_pred CccEEEEccCccc-cccc---cccccCCcccceeccc-ccc------ccc-cCCcCCCcceeEecCCchhhhhhhhhccc
Q 008856 360 KLTALEIYDCKRL-KALP---KGLHNLSTLQDLTIGG-ALL------SLE-EDGLPTNLHSLVIRGNMEIWKSMIEWGRG 427 (551)
Q Consensus 360 ~L~~L~l~~c~~l-~~~~---~~~~~l~~L~~L~l~~-~l~------~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 427 (551)
+|++|++++|..- ..++ ..+..+++|+.|++++ .+. .++ ....+++|++|++++|.............
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 6666666664321 1222 3455667777777776 443 122 22456788888888888432111111111
Q ss_pred cccCCCccEEEEeccCCCCccccc-----ccccccccccccccccccccccccCCChhh-----hhhhc-cCCCCcCEEE
Q 008856 428 FHRFSSLRHLTIDGCDDDTMMVSF-----PLEDKRLGTVLRLPTTLTSLRIEDFPNLER-----LSSSI-IDLRNLTELV 496 (551)
Q Consensus 428 ~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~-~~l~~L~~L~ 496 (551)
+..+++|++|++++|. +... +.... ....++|++|++++ +.+.. +|..+ .++++|++|+
T Consensus 240 l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCL----LSARGAAAVVDAFS-----KLENIGLQTLRLQY-NEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp GGGCTTCCEEECTTCC----CCHHHHHHHHHHHH-----TCSSCCCCEEECCS-SCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HccCCCcCEEECCCCC----CchhhHHHHHHHHh-----hccCCCeEEEECcC-CcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 6778888889888883 3332 22110 01257888889888 56665 77665 5689999999
Q ss_pred EcCCCCccc
Q 008856 497 LRGCPKLKY 505 (551)
Q Consensus 497 l~~c~~l~~ 505 (551)
+++|+ +..
T Consensus 310 l~~N~-l~~ 317 (386)
T 2ca6_A 310 LNGNR-FSE 317 (386)
T ss_dssp CTTSB-SCT
T ss_pred ccCCc-CCc
Confidence 99854 443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-13 Score=126.71 Aligned_cols=169 Identities=20% Similarity=0.288 Sum_probs=77.9
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEEEc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALEIY 367 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~ 367 (551)
|+.|+++++... .+ ..+..+++|++|++++ +.+..+ ..+..+++|++|++++| .++.++.. ...+++|++|+++
T Consensus 43 L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~-n~l~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 43 IDQIIANNSDIK-SV-QGIQYLPNVRYLALGG-NKLHDI-SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp CCEEECTTSCCC-CC-TTGGGCTTCCEEECTT-SCCCCC-GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred eeeeeeCCCCcc-cc-cccccCCCCcEEECCC-CCCCCc-hhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECC
Confidence 566666555322 21 1244555666666655 334443 24455555666666553 33333331 2333455555555
Q ss_pred cCcccccccc-ccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCC
Q 008856 368 DCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDD 445 (551)
Q Consensus 368 ~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 445 (551)
+|. ++.++. .+..+++|+.|++++ .+..++.. + +..+++|++|++++|.
T Consensus 118 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------------------~---~~~l~~L~~L~l~~n~-- 168 (272)
T 3rfs_A 118 ENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-----------------------V---FDKLTNLTELDLSYNQ-- 168 (272)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------------------T---TTTCTTCCEEECCSSC--
T ss_pred CCc-CCccCHHHhccCCCCCEEECCCCccCccCHH-----------------------H---hccCccCCEEECCCCC--
Confidence 532 333322 234445555555544 33333331 1 3344555555555552
Q ss_pred CcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCC
Q 008856 446 TMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGC 500 (551)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c 500 (551)
+..++... +..+++|++|++++ +.++.++ ..+..+++|++|++++|
T Consensus 169 --l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 169 --LQSLPEGV------FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp --CCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --cCccCHHH------hcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCC
Confidence 33333321 12344555555555 3444443 22445555666666554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=123.83 Aligned_cols=61 Identities=21% Similarity=0.367 Sum_probs=28.4
Q ss_pred ccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCC
Q 008856 429 HRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGC 500 (551)
Q Consensus 429 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c 500 (551)
..+++|++|++++|. +..++... +..+++|++|++++ +.++.++ ..+..+++|++|+++++
T Consensus 128 ~~l~~L~~L~Ls~N~----l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 128 DRLTKLKELRLNTNQ----LQSIPAGA------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTCTTCCEEECCSSC----CCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCCcccEEECcCCc----CCccCHHH------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 344555555555542 44444321 12334555555555 4444444 23444555555555553
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-13 Score=136.24 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=18.9
Q ss_pred CCccEEEecCCCCchhhcccCc----chhcccC-CccEEeecCCcccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHN----ELLQDIC-SLKRLTITSCPKLQSL 104 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~----~~~~~l~-~L~~L~l~~~~~l~~l 104 (551)
++|++|+++++ .++.. +. ..+..++ +|++|++++| .++..
T Consensus 22 ~~L~~L~Ls~n-~l~~~---~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 66 (362)
T 3goz_A 22 HGVTSLDLSLN-NLYSI---STVELIQAFANTPASVTSLNLSGN-SLGFK 66 (362)
T ss_dssp TTCCEEECTTS-CGGGS---CHHHHHHHHHTCCTTCCEEECCSS-CGGGS
T ss_pred CCceEEEccCC-CCChH---HHHHHHHHHHhCCCceeEEECcCC-CCCHH
Confidence 34555555552 34433 32 3334454 5555555554 34443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-13 Score=127.85 Aligned_cols=164 Identities=19% Similarity=0.229 Sum_probs=86.5
Q ss_pred CCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceec
Q 008856 311 TSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTI 390 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l 390 (551)
++|+.|++++ +.+..++ .+..+++|++|++++| .++.++. ...+++|+.|++++| .++.++. +.++++|+.|++
T Consensus 46 ~~L~~L~l~~-~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred CcccEEEccC-CCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 3444444444 2333332 2344445555555442 3333322 222334555555542 2333332 555556666666
Q ss_pred cc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccccc
Q 008856 391 GG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLT 469 (551)
Q Consensus 391 ~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 469 (551)
++ .+..++....+++|++|++++|.... . +. +..+++|++|++++|. +..++. . ..+++|+
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~----l~~l~~L~~L~L~~N~----l~~~~~-l-------~~l~~L~ 181 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITD-I-TV----LSRLTKLDTLSLEDNQ----ISDIVP-L-------AGLTKLQ 181 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCC-C-GG----GGGCTTCSEEECCSSC----CCCCGG-G-------TTCTTCC
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCc-c-hh----hccCCCCCEEEccCCc----cccchh-h-------cCCCccC
Confidence 55 44444444455666666666665322 1 11 5567777777777763 444443 1 2456777
Q ss_pred ccccccCCChhhhhhhccCCCCcCEEEEcCC
Q 008856 470 SLRIEDFPNLERLSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 470 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c 500 (551)
.|++++ +.++.++ .+..+++|+.|++++|
T Consensus 182 ~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 182 NLYLSK-NHISDLR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCS-SCCCBCG-GGTTCTTCSEEEEEEE
T ss_pred EEECCC-CcCCCCh-hhccCCCCCEEECcCC
Confidence 777777 5666665 3667777777777774
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-12 Score=120.83 Aligned_cols=148 Identities=22% Similarity=0.260 Sum_probs=89.5
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+++.|++++|......+..+..+++|++|++++ +.+..+ +..+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCC-CcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence 477777777765444455566777777777777 445555 344566777777777773 4445443 233455777777
Q ss_pred EccCccccccccc-cccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEec
Q 008856 366 IYDCKRLKALPKG-LHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDG 441 (551)
Q Consensus 366 l~~c~~l~~~~~~-~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 441 (551)
++++ .++.++.. +.++++|+.|++++ .+..++.. ..+++|++|++++|... ...+.. +..+++|+.|++++
T Consensus 114 L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 114 LGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA---FDRLGKLQTITLFG 188 (251)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTT---TTTCTTCCEEECCS
T ss_pred cCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHH---HhCCCCCCEEEeeC
Confidence 7763 45555543 46667777777766 66655542 34566777777766632 222222 55667777777776
Q ss_pred c
Q 008856 442 C 442 (551)
Q Consensus 442 ~ 442 (551)
|
T Consensus 189 N 189 (251)
T 3m19_A 189 N 189 (251)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=125.42 Aligned_cols=169 Identities=18% Similarity=0.148 Sum_probs=136.7
Q ss_pred ccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCccee
Q 008856 331 LHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSL 409 (551)
Q Consensus 331 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L 409 (551)
...+++|++|++++| .+..++. ...+++|+.|++++| .++.++. +.++++|+.|++++ .+..++....+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 356789999999995 6666654 344569999999995 5777766 89999999999999 88888877788999999
Q ss_pred EecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCC
Q 008856 410 VIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDL 489 (551)
Q Consensus 410 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l 489 (551)
++++|.... . +. +..+++|+.|++++|. +..++.- ..+++|++|++++ +.++.++. +..+
T Consensus 118 ~L~~n~i~~-~-~~----l~~l~~L~~L~l~~n~----l~~~~~l--------~~l~~L~~L~L~~-N~l~~~~~-l~~l 177 (291)
T 1h6t_A 118 SLEHNGISD-I-NG----LVHLPQLESLYLGNNK----ITDITVL--------SRLTKLDTLSLED-NQISDIVP-LAGL 177 (291)
T ss_dssp ECTTSCCCC-C-GG----GGGCTTCCEEECCSSC----CCCCGGG--------GGCTTCSEEECCS-SCCCCCGG-GTTC
T ss_pred ECCCCcCCC-C-hh----hcCCCCCCEEEccCCc----CCcchhh--------ccCCCCCEEEccC-Cccccchh-hcCC
Confidence 999998433 2 22 6789999999999994 6665432 3678999999999 68888875 8899
Q ss_pred CCcCEEEEcCCCCccccCCCCCccccceEeecCCc
Q 008856 490 RNLTELVLRGCPKLKYFPEKGLPSSLLELWISGCP 524 (551)
Q Consensus 490 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 524 (551)
++|++|++++| .++.++....+++|+.|++++|+
T Consensus 178 ~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 178 TKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 99999999995 68887665557899999999885
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-13 Score=136.84 Aligned_cols=225 Identities=15% Similarity=0.111 Sum_probs=147.6
Q ss_pred CCCccEEEeccCcchhhhH----hhhcCCC-CCcEEEEecCCCcccc-cccccCC-----CCcceEEecCCCCCccCCCC
Q 008856 286 PPSLKSLRVRYCSKLESIA----ERLDNNT-SLETISIYNCENLKIL-PSGLHKL-----HQLREISIGSCGNLVSFPGG 354 (551)
Q Consensus 286 ~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~l~~~-~~~~~~~-----~~L~~L~l~~~~~l~~l~~~ 354 (551)
+.+|++|++++|......+ ..+..++ +|++|++++| .+... +..+..+ ++|++|++++|. +......
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 3469999999997554433 6778888 8999999995 56554 4444443 899999999964 4433211
Q ss_pred -----CCCC-CCccEEEEccCccccccc-cc----ccc-CCcccceeccc-cccc-----cccC-CcC-CCcceeEecCC
Q 008856 355 -----GLPC-AKLTALEIYDCKRLKALP-KG----LHN-LSTLQDLTIGG-ALLS-----LEED-GLP-TNLHSLVIRGN 414 (551)
Q Consensus 355 -----~~~~-~~L~~L~l~~c~~l~~~~-~~----~~~-l~~L~~L~l~~-~l~~-----l~~~-~~~-~~L~~L~l~~~ 414 (551)
.... ++|++|++++|. ++..+ .. +.. .++|++|++++ .+.. ++.. ... ++|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 1111 589999999965 44433 22 334 36999999998 5542 2221 123 49999999999
Q ss_pred chhhhhhhhhccccccC-CCccEEEEeccCCCCcccc-----cccccccccccccccccccccccccCCChhhh-----h
Q 008856 415 MEIWKSMIEWGRGFHRF-SSLRHLTIDGCDDDTMMVS-----FPLEDKRLGTVLRLPTTLTSLRIEDFPNLERL-----S 483 (551)
Q Consensus 415 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~ 483 (551)
.............+..+ ++|++|++++|. +.. ++... ...+++|++|++++ +.+... .
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----i~~~~~~~l~~~l------~~~~~~L~~L~Ls~-N~l~~~~~~~l~ 246 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANL----LGLKSYAELAYIF------SSIPNHVVSLNLCL-NCLHGPSLENLK 246 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHH------HHSCTTCCEEECCS-SCCCCCCHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCC----CChhHHHHHHHHH------hcCCCCceEEECcC-CCCCcHHHHHHH
Confidence 85443322222224556 599999999994 554 33322 11246899999999 677654 3
Q ss_pred hhccCCCCcCEEEEcCCC-------CccccCC-CCCccccceEeecCCc
Q 008856 484 SSIIDLRNLTELVLRGCP-------KLKYFPE-KGLPSSLLELWISGCP 524 (551)
Q Consensus 484 ~~~~~l~~L~~L~l~~c~-------~l~~l~~-~~~~~~L~~L~i~~c~ 524 (551)
..+..+++|++|++++|. .+..++. ....++|++|++++++
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 445778999999999964 0222222 1235689999999986
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.1e-12 Score=131.22 Aligned_cols=131 Identities=24% Similarity=0.376 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccc
Q 008856 252 LLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGL 331 (551)
Q Consensus 252 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 331 (551)
+++.|++++ +.++. +|...++ +|++|++++|... .++ ..+++|++|++++ +.+..+|. +
T Consensus 60 ~L~~L~Ls~-n~L~~-lp~~l~~-------------~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~-N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNR-LNLSS-LPDNLPP-------------QITVLEITQNALI-SLP---ELPASLEYLDACD-NRLSTLPE-L 118 (571)
T ss_dssp TCSEEECCS-SCCSC-CCSCCCT-------------TCSEEECCSSCCS-CCC---CCCTTCCEEECCS-SCCSCCCC-C
T ss_pred CccEEEeCC-CCCCc-cCHhHcC-------------CCCEEECcCCCCc-ccc---cccCCCCEEEccC-CCCCCcch-h
Confidence 566666666 33444 3332222 3666666666432 333 3456666666666 44555544 3
Q ss_pred cCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeE
Q 008856 332 HKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLV 410 (551)
Q Consensus 332 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~ 410 (551)
.. +|++|++++| .++.+|. .+++|+.|++++ +.++.+|. .+++|+.|++++ .+..+|. ..++|++|+
T Consensus 119 ~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~~~L~~L~ 186 (571)
T 3cvr_A 119 PA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN-NQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LPESLEALD 186 (571)
T ss_dssp CT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEE
T ss_pred hc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC-CccCcCCC---cCCCcCEEECCCCCCCCcch--hhCCCCEEE
Confidence 32 6666666663 4444554 234666666665 33444544 345555555555 4444444 225555555
Q ss_pred ecCCc
Q 008856 411 IRGNM 415 (551)
Q Consensus 411 l~~~~ 415 (551)
+++|.
T Consensus 187 Ls~N~ 191 (571)
T 3cvr_A 187 VSTNL 191 (571)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 55554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.7e-12 Score=130.55 Aligned_cols=181 Identities=21% Similarity=0.290 Sum_probs=129.2
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+++.|++++|.. ..++..+ +++|+.|++++ +.+..+| ..+++|++|++++| .++.+|. ... +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~-N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNL-SSLPDNL--PPQITVLEITQ-NALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCC-SCCCSCC--CTTCSEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCC-CccCHhH--cCCCCEEECcC-CCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 588999988854 3355433 37899999988 6677777 45788999999985 6666776 222 89999998
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+ +.++.+|. .+++|+.|++++ .+..+|. .+++|++|++++|.... + +. +. ++|+.|++++|.
T Consensus 129 ~-N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~-l-p~----l~--~~L~~L~Ls~N~--- 191 (571)
T 3cvr_A 129 N-NQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF-L-PE----LP--ESLEALDVSTNL--- 191 (571)
T ss_dssp S-SCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-C-CC----CC--TTCCEEECCSSC---
T ss_pred C-CcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC-c-ch----hh--CCCCEEECcCCC---
Confidence 8 45666776 678899999988 7777776 56889999999887322 2 11 22 789999999883
Q ss_pred cccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
+..+|. ... ..+..++.|+.|++++ |.++.+|..+..+++|++|++++|+
T Consensus 192 -L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 192 -LESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred -CCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 777776 310 0011112228899988 7888888777778999999999865
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=112.22 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=82.7
Q ss_pred ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 110 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 110 (551)
+++|+.|++.++.... ++ ....+++|++|+++++ .++.+ ..+..+++|++|++++|. ++.....
T Consensus 43 l~~L~~L~l~~n~i~~----l~--~l~~l~~L~~L~l~~n-~~~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~--- 106 (197)
T 4ezg_A 43 MNSLTYITLANINVTD----LT--GIEYAHNIKDLTINNI-HATNY-----NPISGLSNLERLRIMGKD-VTSDKIP--- 106 (197)
T ss_dssp HHTCCEEEEESSCCSC----CT--TGGGCTTCSEEEEESC-CCSCC-----GGGTTCTTCCEEEEECTT-CBGGGSC---
T ss_pred cCCccEEeccCCCccC----hH--HHhcCCCCCEEEccCC-CCCcc-----hhhhcCCCCCEEEeECCc-cCcccCh---
Confidence 4555555555554331 22 1234566777777664 44432 235566677777777643 4432121
Q ss_pred hhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhh
Q 008856 111 DQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMC 190 (551)
Q Consensus 111 ~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (551)
.+..+ ++|++|++++|......+..+..+++|++|++++|..++.++.+..+++|++|++++|. +..++..
T Consensus 107 -~l~~l----~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l--- 177 (197)
T 4ezg_A 107 -NLSGL----TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGI--- 177 (197)
T ss_dssp -CCTTC----TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTG---
T ss_pred -hhcCC----CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHh---
Confidence 14444 66777777665433334555666677777777765445666656666777777776654 4444322
Q ss_pred ccCCCccEEEEecC
Q 008856 191 DTNSSLEILSIHGC 204 (551)
Q Consensus 191 ~~~~~L~~L~l~~~ 204 (551)
..+++|+.|+++++
T Consensus 178 ~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGCSSCCEEEECBC
T ss_pred ccCCCCCEEEeeCc
Confidence 33466777777664
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-12 Score=112.85 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=56.0
Q ss_pred hcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCccc
Q 008856 307 LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQ 386 (551)
Q Consensus 307 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 386 (551)
+..+++|++|++++| .+..+ ..+..+++|++|++++|.--...+.....+++|+.|++++|......+..+.++++|+
T Consensus 62 l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 333444444444442 23222 2333444444444444221111222222333444444444322222333444555555
Q ss_pred ceeccc-c-ccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 387 DLTIGG-A-LLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 387 ~L~l~~-~-l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
.|++++ . +..++....+++|++|++++|+... .. . +..+++|++|++++|
T Consensus 140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~----l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-G----IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-T----GGGCSSCCEEEECBC
T ss_pred EEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-H----hccCCCCCEEEeeCc
Confidence 555555 2 4444433445556666666655222 11 1 456666666666665
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.27 E-value=9.4e-12 Score=131.72 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=138.4
Q ss_pred hcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCccc
Q 008856 307 LDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQ 386 (551)
Q Consensus 307 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 386 (551)
...+++|+.|++++ +.+..++ .+..+++|+.|++++| .+..++. ...+++|+.|++++| .++.++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCC
Confidence 34578899999998 5577775 5788999999999995 5655554 445669999999995 566665 688999999
Q ss_pred ceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccc
Q 008856 387 DLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLP 465 (551)
Q Consensus 387 ~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (551)
.|++++ .+..++....+++|+.|+|++|.... . + .+..+++|+.|++++|. +..++.- ..+
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~----~l~~l~~L~~L~Ls~N~----l~~~~~l--------~~l 174 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITD-I-T----VLSRLTKLDTLSLEDNQ----ISDIVPL--------AGL 174 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCC-C-G----GGGSCTTCSEEECCSSC----CCCCGGG--------TTC
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCccCC-c-h----hhcccCCCCEEECcCCc----CCCchhh--------ccC
Confidence 999999 77777777778999999999998443 2 2 17789999999999993 5555542 267
Q ss_pred ccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCC
Q 008856 466 TTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 466 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
++|+.|++++ +.+..++ .+..+++|+.|++++|+ +...|.
T Consensus 175 ~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p~ 214 (605)
T 1m9s_A 175 TKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKPI 214 (605)
T ss_dssp TTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSEE-EECCCC
T ss_pred CCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCCc-CcCCcc
Confidence 8999999999 6888886 57889999999999954 555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6.5e-12 Score=132.96 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=133.0
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|+.|++++|.. ..++ .+..+++|+.|++++ +.+..++. +..+++|+.|++++| .+..++. ...+++|+.|+++
T Consensus 44 ~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~-l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNG-NKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSS-LKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTT-SCCCCCGG-GGGCTTCCEEECCSS-CCCCCTT-STTCTTCCEEECT
T ss_pred CCCEEECcCCCC-CCCh-HHccCCCCCEEEeeC-CCCCCChh-hccCCCCCEEECcCC-CCCCChh-hccCCCCCEEEec
Confidence 499999998864 3333 578899999999999 56777754 888999999999995 6666663 4456699999999
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+| .+..++ .+..+++|+.|++++ .+..++....+++|++|+|++|.... ..+ +..+++|+.|++++|.
T Consensus 118 ~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-----l~~l~~L~~L~Ls~N~--- 186 (605)
T 1m9s_A 118 HN-GISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVP-----LAGLTKLQNLYLSKNH--- 186 (605)
T ss_dssp TS-CCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSC---
T ss_pred CC-CCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC-chh-----hccCCCCCEEECcCCC---
Confidence 95 466664 588999999999999 77777666778999999999998433 222 6689999999999994
Q ss_pred cccccccccccccccccccccccccccccCCChhhhh
Q 008856 447 MMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS 483 (551)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 483 (551)
+..++.- ..+++|+.|++++ +.+...|
T Consensus 187 -i~~l~~l--------~~l~~L~~L~L~~-N~l~~~p 213 (605)
T 1m9s_A 187 -ISDLRAL--------AGLKNLDVLELFS-QECLNKP 213 (605)
T ss_dssp -CCBCGGG--------TTCTTCSEEECCS-EEEECCC
T ss_pred -CCCChHH--------ccCCCCCEEEccC-CcCcCCc
Confidence 6666542 2678999999999 5666554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-12 Score=119.94 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=60.4
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEcc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYD 368 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 368 (551)
+..++++++.. +.++ .+..+++|+.|++++ +.+..++ .+..+++|++|++++| .+..++. ...+++|+.|++++
T Consensus 21 l~~l~l~~~~i-~~~~-~~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSV-TDLV-SQKELSGVQNFNGDN-SNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCT-TSEE-CHHHHTTCSEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCc-cccc-chhhcCcCcEEECcC-CCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 55555555532 2222 345566777777777 4566654 4566677777777663 4444443 33344566666665
Q ss_pred CccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCc
Q 008856 369 CKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNM 415 (551)
Q Consensus 369 c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~ 415 (551)
| .++.++... . ++|+.|++++ .+..++....+++|++|++++|.
T Consensus 95 N-~l~~l~~~~-~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 95 N-RLKNLNGIP-S-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp S-CCSCCTTCC-C-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC
T ss_pred C-ccCCcCccc-c-CcccEEEccCCccCCChhhcCcccccEEECCCCc
Confidence 3 344443321 1 4555555554 44444333334444444444444
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-10 Score=107.67 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=69.8
Q ss_pred ceEEeCCCCCcccccc-ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSA-TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
+.++.+++....++.. .++|+.|++.++.... ++...+..+++|++|++++ +.++.+ +...+..+++|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~-N~l~~i---~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGS-NQLGAL---PVGVFDSLTQLTVL 93 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCS-SCCCCC---CTTTTTTCTTCCEE
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCC-CCCCCc---ChhhcccCCCcCEE
Confidence 3444444433334433 3445555555544332 2222233455555555555 344444 44444555555555
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCc
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLK 171 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~ 171 (551)
+++++ .++.+++. .+..+ ++|++|++++| .+..+|..+..+++|++|++++ +.++.++. +..+++|+
T Consensus 94 ~Ls~N-~l~~l~~~----~~~~l----~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 94 DLGTN-QLTVLPSA----VFDRL----VHLKELFMCCN-KLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp ECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred ECCCC-cCCccChh----HhCcc----hhhCeEeccCC-cccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCC
Confidence 55553 35554442 12333 55555555553 3445555555555555555555 24444443 33455555
Q ss_pred EEEccCCC
Q 008856 172 KIQIGECD 179 (551)
Q Consensus 172 ~L~l~~~~ 179 (551)
.|++++|+
T Consensus 163 ~L~l~~N~ 170 (229)
T 3e6j_A 163 HAYLFGNP 170 (229)
T ss_dssp EEECTTSC
T ss_pred EEEeeCCC
Confidence 55555543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=108.14 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=97.4
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|++++ +.+..++ ..+..+++|++|++++| .++.++.. ...+++|+.|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence 599999999876666677788899999999998 6677775 44578899999999984 66666653 34567899999
Q ss_pred EccCccccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCch
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNME 416 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~ 416 (551)
+++ +.++.+|..+.++++|+.|++++ .+..++.. ..+++|++|++++|+.
T Consensus 119 Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 119 MCC-NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCS-SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccC-CcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 988 56778888888888888888888 77766653 3467788888877773
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=105.62 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=69.4
Q ss_pred ceEEeCCCCCcccccc-ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEE
Q 008856 15 CKMEIGGCKKVVWRSA-TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRL 93 (551)
Q Consensus 15 ~~L~l~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L 93 (551)
+.++++++....++.. ...++.|++.++..... .+...+..+++|++|++++ +.++.+ +...+..+++|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~---~~~~~~~~l~~L~~L~L~~-N~i~~i---~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVL---EATGIFKKLPQLRKINFSN-NKITDI---EEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEE---CCCCCGGGCTTCCEEECCS-SCCCEE---CTTTTTTCTTCCEE
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCcc---CchhhhccCCCCCEEECCC-CcCCEE---CHHHhCCCCCCCEE
Confidence 3555555544444444 22345555555443221 1222233455555555555 344444 44445555555555
Q ss_pred eecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCc
Q 008856 94 TITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLK 171 (551)
Q Consensus 94 ~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~ 171 (551)
+++++ .++.+++. .+..+ ++|++|++++|..-...+..+..+++|++|++++ +.++.+++ +..+++|+
T Consensus 87 ~Ls~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 87 LLTSN-RLENVQHK----MFKGL----ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp ECCSS-CCCCCCGG----GGTTC----SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCC
T ss_pred ECCCC-ccCccCHh----HhcCC----cCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCC
Confidence 55553 35544442 23333 5555555555432222234455555555555555 23444422 33455555
Q ss_pred EEEccCCC
Q 008856 172 KIQIGECD 179 (551)
Q Consensus 172 ~L~l~~~~ 179 (551)
+|++++|.
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 55555543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=105.03 Aligned_cols=128 Identities=14% Similarity=0.206 Sum_probs=59.2
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+.+. ++..+ ++|++|+|++| .+..+|.
T Consensus 32 ~~l~~L~l~~-n~i~~i---~~~~~~~l~~L~~L~Ls~N-~i~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~l~~ 97 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKVI---PPGAFSPYKKLRRIDLSNN-QISELAPD----AFQGL----RSLNSLVLYGN-KITELPK 97 (220)
T ss_dssp TTCCEEECCS-SCCCEE---CTTSSTTCTTCCEEECCSS-CCCEECTT----TTTTC----SSCCEEECCSS-CCCCCCT
T ss_pred cCCCEEECCC-CcCCCc---CHhHhhCCCCCCEEECCCC-cCCCcCHH----HhhCC----cCCCEEECCCC-cCCccCH
Confidence 3455555555 344444 4444455555555555553 34444332 23434 55555555553 3344443
Q ss_pred c-cCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecC
Q 008856 140 S-SFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGC 204 (551)
Q Consensus 140 ~-~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 204 (551)
. +..+++|++|+++++ .++.+++ +..+++|++|++++|. +..++...+ ..+++|+.|+++++
T Consensus 98 ~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTF-SPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCSS
T ss_pred hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHH-hCCCCCCEEEeCCC
Confidence 2 344555555555552 3444432 3345555555555533 333332211 12245555555553
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=110.27 Aligned_cols=147 Identities=22% Similarity=0.307 Sum_probs=113.5
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+|++|++++|.. ..++ .+..+++|+.|++++ +.+..++. +..+++|++|++++| .++.++.... ++|+.|+++
T Consensus 42 ~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCC-CCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEECC
T ss_pred cCcEEECcCCCc-ccch-HHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEcc
Confidence 488888888853 3444 577889999999988 56777755 788999999999994 6666765444 589999999
Q ss_pred cCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDT 446 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 446 (551)
+| .++.++ .+.++++|+.|++++ .+..++....+++|++|++++|+... . . .+..+++|+.|++++|.
T Consensus 115 ~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~-~--~---~l~~l~~L~~L~l~~N~--- 183 (263)
T 1xeu_A 115 NN-ELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN-T--G---GLTRLKKVNWIDLTGQK--- 183 (263)
T ss_dssp SS-CCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB-C--T---TSTTCCCCCEEEEEEEE---
T ss_pred CC-ccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc-h--H---HhccCCCCCEEeCCCCc---
Confidence 85 566665 588899999999999 77777766778999999999998443 2 1 27789999999999984
Q ss_pred ccccccc
Q 008856 447 MMVSFPL 453 (551)
Q Consensus 447 ~~~~~~~ 453 (551)
+...|.
T Consensus 184 -~~~~~~ 189 (263)
T 1xeu_A 184 -CVNEPV 189 (263)
T ss_dssp -EECCCE
T ss_pred -ccCCcc
Confidence 555443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.6e-11 Score=118.28 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=81.0
Q ss_pred cEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-ccc-CCCCcceEEecCCCCCccCCC-CCCCCCCccEEEE
Q 008856 290 KSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLH-KLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEI 366 (551)
Q Consensus 290 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~-~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 366 (551)
+.++.+++. ++.++..+ .+.++.|++++ +.+..++. .+. .+++|++|++++| .+..++. ....+++|+.|++
T Consensus 21 ~~l~c~~~~-l~~iP~~~--~~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSL--PSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSC-CSSCCSSC--CTTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCC-cCccCccC--CCCCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 456665553 33343322 23567777777 55665533 333 6677777777773 4554443 3444556777777
Q ss_pred ccCcccccccc-ccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 367 YDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 367 ~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
+++ .++.++. .+.++++|+.|++++ .+..++.. ..+++|++|++++|.... ........+..+++|+.|++++|
T Consensus 96 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 96 SSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSS
T ss_pred CCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCC
Confidence 763 3555543 456667777777766 55555432 335666666666665322 22211000134666666666666
Q ss_pred CCCCccccccc
Q 008856 443 DDDTMMVSFPL 453 (551)
Q Consensus 443 ~~~~~~~~~~~ 453 (551)
. +..++.
T Consensus 174 ~----l~~l~~ 180 (361)
T 2xot_A 174 K----LKKLPL 180 (361)
T ss_dssp C----CCCCCH
T ss_pred C----CCccCH
Confidence 3 555553
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=104.98 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=87.6
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
++++|++++|......+..+..+++|+.|++++ +.+..+ |..+..+++|++|++++ +.++.++.. ...+++|+.|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEE
Confidence 578888888765444445677788888888888 556665 66777888888888888 466666653 34456888888
Q ss_pred EccCcccccc-ccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCch
Q 008856 366 IYDCKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNME 416 (551)
Q Consensus 366 l~~c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~ 416 (551)
++++ .++.+ +..+..+++|+.|++++ .+..++.. ..+++|++|++++|+.
T Consensus 111 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8874 45544 45677778888888877 66666553 3456777777777763
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.7e-10 Score=101.65 Aligned_cols=145 Identities=26% Similarity=0.353 Sum_probs=82.6
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|++++| .+..++.
T Consensus 28 ~~l~~L~l~~-n~l~~~---~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n-~l~~~~~ 93 (208)
T 2o6s_A 28 AQTTYLDLET-NSLKSL---PNGVFDELTSLTQLYLGGN-KLQSLPNG----VFNKL----TSLTYLNLSTN-QLQSLPN 93 (208)
T ss_dssp TTCSEEECCS-SCCCCC---CTTTTTTCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCT
T ss_pred CCCcEEEcCC-CccCcC---ChhhhcccccCcEEECCCC-ccCccChh----hcCCC----CCcCEEECCCC-cCCccCH
Confidence 4666777766 355555 5555566677777777764 46655543 23444 67777777664 3344443
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCC
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP 216 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 216 (551)
.+..+++|++|+++++ .++.+++ +..+++|++|++++|. +..++...+ ..+++|+.|++++++.. ..+
T Consensus 94 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~~~------~~~ 164 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVF-DRLTSLQYIWLHDNPWD------CTC 164 (208)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCSCCBC------CCT
T ss_pred hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHh-ccCCCccEEEecCCCee------cCC
Confidence 3456677777777663 4555554 3456677777776653 444443211 22366777777765322 223
Q ss_pred CCccEEEEecC
Q 008856 217 SSLKMLTIWYC 227 (551)
Q Consensus 217 ~~L~~L~l~~~ 227 (551)
++++.|+++.+
T Consensus 165 ~~l~~L~~~~n 175 (208)
T 2o6s_A 165 PGIRYLSEWIN 175 (208)
T ss_dssp TTTHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 46677766654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=105.84 Aligned_cols=125 Identities=24% Similarity=0.292 Sum_probs=71.2
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
+|++|++++|.........+..+++|++|++++ +.+..++. .+..+++|++|++++| .++.++.. ...+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEE
Confidence 477777777754433344566777777777777 45666543 3456777777777774 45555442 23455677777
Q ss_pred EccCcccccccc-ccccCCcccceeccc-cccccccC--CcCCCcceeEecCCc
Q 008856 366 IYDCKRLKALPK-GLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNM 415 (551)
Q Consensus 366 l~~c~~l~~~~~-~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~ 415 (551)
++++ .++.++. .+.++++|+.|++++ .+..++.. ..+++|++|++++|+
T Consensus 107 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 7663 3444443 245556666666655 44444432 224455555555543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-10 Score=111.36 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=37.5
Q ss_pred CCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcC-EEEEcCCCCccccCC
Q 008856 431 FSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLT-ELVLRGCPKLKYFPE 508 (551)
Q Consensus 431 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~-~L~l~~c~~l~~l~~ 508 (551)
+++|+.+++.+|. +..++... |..+++|+++++.+ +++.++ ..+.++++|+ .+++.+ .++.++.
T Consensus 225 ~~~L~~l~L~~n~----i~~I~~~a------F~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTN----ATTIPDFT------FAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTTBC----CCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred cCCCeEEECCCCC----cceecHhh------hhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEch
Confidence 4555555555542 44454432 33445555555554 244444 3345555555 555554 4555544
Q ss_pred CCC--ccccceEeec
Q 008856 509 KGL--PSSLLELWIS 521 (551)
Q Consensus 509 ~~~--~~~L~~L~i~ 521 (551)
..+ +++|+.+++.
T Consensus 291 ~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 291 GAFMGCDNLRYVLAT 305 (329)
T ss_dssp TTTTTCTTEEEEEEC
T ss_pred hhhhCCccCCEEEeC
Confidence 322 3455555553
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=116.30 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=86.0
Q ss_pred cEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcc
Q 008856 220 KMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSK 299 (551)
Q Consensus 220 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 299 (551)
+.++.++ ..++.+ |..+.. .++.|++++ +.++. ++...+.. . .++|++|++++|..
T Consensus 21 ~~l~c~~-~~l~~i--P~~~~~----------~l~~L~Ls~-N~l~~-l~~~~~~~---~------l~~L~~L~L~~N~i 76 (361)
T 2xot_A 21 NILSCSK-QQLPNV--PQSLPS----------YTALLDLSH-NNLSR-LRAEWTPT---R------LTNLHSLLLSHNHL 76 (361)
T ss_dssp TEEECCS-SCCSSC--CSSCCT----------TCSEEECCS-SCCCE-ECTTSSSS---C------CTTCCEEECCSSCC
T ss_pred CEEEeCC-CCcCcc--CccCCC----------CCCEEECCC-CCCCc-cChhhhhh---c------ccccCEEECCCCcC
Confidence 4555555 355555 555443 466677666 44554 33222110 0 01366666666654
Q ss_pred hhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccC-CCCCCCCCCccEEEEccCcccccccc
Q 008856 300 LESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSF-PGGGLPCAKLTALEIYDCKRLKALPK 377 (551)
Q Consensus 300 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~ 377 (551)
....+..+..+++|++|++++ +.+..++ ..+..+++|++|++++| .+..+ +.....+++|+.|++++ +.++.+|.
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~ 153 (361)
T 2xot_A 77 NFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPV 153 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCSCCG
T ss_pred CccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCC-CcCCeeCH
Confidence 433344566666666666666 4455553 34555666666666663 33333 22333445666666666 34555544
Q ss_pred cc----ccCCcccceeccc-cccccccC--CcCCC--cceeEecCCc
Q 008856 378 GL----HNLSTLQDLTIGG-ALLSLEED--GLPTN--LHSLVIRGNM 415 (551)
Q Consensus 378 ~~----~~l~~L~~L~l~~-~l~~l~~~--~~~~~--L~~L~l~~~~ 415 (551)
.+ ..+++|+.|++++ .+..++.. ..++. ++.|++.+|+
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 32 3456666666665 44444422 12233 3555665555
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-10 Score=100.45 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=71.6
Q ss_pred CccEEEEccCcccc--ccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccE
Q 008856 360 KLTALEIYDCKRLK--ALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRH 436 (551)
Q Consensus 360 ~L~~L~l~~c~~l~--~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 436 (551)
+|++|++++|. ++ .+|..+..+++|+.|++++ .+..++....+++|++|++++|..... .+.. +..+++|++
T Consensus 25 ~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~---~~~l~~L~~ 99 (168)
T 2ell_A 25 AVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDML---AEKLPNLTH 99 (168)
T ss_dssp SCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHH---HHHCTTCCE
T ss_pred cCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHH---HhhCCCCCE
Confidence 55555555543 33 4555555556666666655 444443334456666666666663321 2221 345677777
Q ss_pred EEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhh----hccCCCCcCEEEEcCCCCccccC
Q 008856 437 LTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS----SIIDLRNLTELVLRGCPKLKYFP 507 (551)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~c~~l~~l~ 507 (551)
|++++|. +..++.-. .+..+++|++|++++ +.+..+|. .+..+++|++|++++|. ++.+|
T Consensus 100 L~Ls~N~----l~~~~~~~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 100 LNLSGNK----LKDISTLE-----PLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp EECBSSS----CCSSGGGG-----GGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EeccCCc----cCcchhHH-----HHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 7777763 45544200 112456677777776 46666553 56667777777777743 44444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-09 Score=104.04 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=60.5
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCcc-EE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLT-AL 364 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L 364 (551)
++..+.+.+.-...........+++|+.+++.+ +.+..++ ..+..+++|+++++.++ ++.++. ....+++|+ .+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 356666655432222222223467777777776 4566663 34566777777777763 555554 334455666 67
Q ss_pred EEccCccccccc-cccccCCcccceeccc-ccccccc
Q 008856 365 EIYDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEE 399 (551)
Q Consensus 365 ~l~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~ 399 (551)
++.+ .++.++ ..|.++++|+.+++.+ .+..++.
T Consensus 280 ~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 280 ELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp EECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred EEcc--cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 7665 455553 3456666666666644 5555544
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.7e-10 Score=101.68 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=61.4
Q ss_pred ccEEEeccCcchhhhH-hhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 289 LKSLRVRYCSKLESIA-ERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+++|++++|......+ ..+..+++|++|++++ +.+..++ ..+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEE
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEE
Confidence 5555555554322211 2345556666666665 4455442 34555666666666663 3333333 223344566666
Q ss_pred EccCcccccc-ccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCc
Q 008856 366 IYDCKRLKAL-PKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNM 415 (551)
Q Consensus 366 l~~c~~l~~~-~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~ 415 (551)
++++ .++.+ |..+..+++|+.|++++ .+..++.. ..+++|++|++++|+
T Consensus 112 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 6553 23333 34455555566665555 44444221 234555566665555
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-12 Score=135.58 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=71.2
Q ss_pred CccEEEEccCccccccccccccCCcccceeccc-cccccccC-CcCCCcceeEecCCchhhhhhhhhccccccCCCccEE
Q 008856 360 KLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHL 437 (551)
Q Consensus 360 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 437 (551)
.|+.|++++ +.++.+|. +.++++|+.|++++ .+..+|.. +.+++|++|++++|.... + +. +..+++|+.|
T Consensus 442 ~L~~L~Ls~-n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-l-p~----l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAH-KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-V-DG----VANLPRLQEL 513 (567)
T ss_dssp TCSEEECTT-SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-C-GG----GTTCSSCCEE
T ss_pred CceEEEecC-CCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-C-cc----cCCCCCCcEE
Confidence 466666666 34555655 66666666666666 55555543 445677777777766332 2 21 5667777777
Q ss_pred EEeccCCCCccccc--ccccccccccccccccccccccccCCChhhhhh----hccCCCCcCEEE
Q 008856 438 TIDGCDDDTMMVSF--PLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSS----SIIDLRNLTELV 496 (551)
Q Consensus 438 ~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~ 496 (551)
++++|. +..+ |... ..+++|+.|++++ |.++.+|. ....+|+|+.|+
T Consensus 514 ~Ls~N~----l~~~~~p~~l-------~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 514 LLCNNR----LQQSAAIQPL-------VSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ECCSSC----CCSSSTTGGG-------GGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ECCCCC----CCCCCCcHHH-------hcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 777773 5555 4433 2456777777777 56666652 233478888775
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-10 Score=99.93 Aligned_cols=135 Identities=18% Similarity=0.118 Sum_probs=81.6
Q ss_pred CCCCcEEEEecCCCcc--cccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc-cccccccCCccc
Q 008856 310 NTSLETISIYNCENLK--ILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA-LPKGLHNLSTLQ 386 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~l~~L~ 386 (551)
.++|++|++++| .+. .+|..+..+++|++|++++|. ++.+ .....+++|+.|++++|. ++. +|..+.++++|+
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCC
Confidence 355666666663 344 455555666666666666643 4444 333344567777777643 333 555555677777
Q ss_pred ceeccc-cccccc---cCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccc
Q 008856 387 DLTIGG-ALLSLE---EDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPL 453 (551)
Q Consensus 387 ~L~l~~-~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 453 (551)
.|++++ .+..++ ....+++|++|++++|+... ..+.....+..+++|++|++++|. +..+|+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~----~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRE----DQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETT----SCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCC----hhhccc
Confidence 777777 555543 23457888888888887433 222100126789999999999984 555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-12 Score=137.42 Aligned_cols=105 Identities=14% Similarity=0.021 Sum_probs=55.2
Q ss_pred ccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccc
Q 008856 385 LQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLR 463 (551)
Q Consensus 385 L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (551)
|+.|++++ .+..+|..+.+++|++|++++|... .+ |.. +..+++|+.|++++|. +..+|. . .
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~l-p~~---~~~l~~L~~L~Ls~N~----l~~lp~-l-------~ 505 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-AL-PPA---LAALRCLEVLQASDNA----LENVDG-V-------A 505 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CC-CGG---GGGCTTCCEEECCSSC----CCCCGG-G-------T
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCccccc-cc-chh---hhcCCCCCEEECCCCC----CCCCcc-c-------C
Confidence 55566655 5555554444556666666665522 11 111 4555666666666652 444442 2 2
Q ss_pred ccccccccccccCCChhhh--hhhccCCCCcCEEEEcCCCCccccCC
Q 008856 464 LPTTLTSLRIEDFPNLERL--SSSIIDLRNLTELVLRGCPKLKYFPE 508 (551)
Q Consensus 464 ~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~c~~l~~l~~ 508 (551)
.+++|+.|++++ |.++.+ |..+..+++|++|++++ +.++.++.
T Consensus 506 ~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~ 550 (567)
T 1dce_A 506 NLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEG 550 (567)
T ss_dssp TCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSS
T ss_pred CCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCcc
Confidence 445666666665 455555 55555566666666666 33544443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.96 E-value=5.3e-10 Score=95.90 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=6.7
Q ss_pred cCCCccEEEEecc
Q 008856 430 RFSSLRHLTIDGC 442 (551)
Q Consensus 430 ~l~~L~~L~l~~~ 442 (551)
.+++|++|++++|
T Consensus 86 ~l~~L~~L~ls~N 98 (149)
T 2je0_A 86 KCPNLTHLNLSGN 98 (149)
T ss_dssp HCTTCCEEECTTS
T ss_pred hCCCCCEEECCCC
Confidence 3455555555554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-08 Score=101.66 Aligned_cols=212 Identities=12% Similarity=0.152 Sum_probs=140.4
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALEI 366 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 366 (551)
+|+.+.+... ........|.+|++|+.+++.. +.+..++.....+.+|+.+.+.+ .++.+.. ....+++|+.+++
T Consensus 158 ~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCTT-CCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCCC-ccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence 3666666542 1122234677788888888876 56777755555567888888864 3555554 3445667888888
Q ss_pred ccCcccccccc-ccccCCcccceeccccccccccC--CcCCCcceeEecCCchh----hhhhhhhccccccCCCccEEEE
Q 008856 367 YDCKRLKALPK-GLHNLSTLQDLTIGGALLSLEED--GLPTNLHSLVIRGNMEI----WKSMIEWGRGFHRFSSLRHLTI 439 (551)
Q Consensus 367 ~~c~~l~~~~~-~~~~l~~L~~L~l~~~l~~l~~~--~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~l~~L~~L~l 439 (551)
.. .++.++. .|.+ .+|+.+.+...+..++.. ..+++|+++++.++... ..+.... +.++++|+.+++
T Consensus 234 ~~--~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a---F~~c~~L~~l~l 307 (401)
T 4fdw_A 234 PE--NVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC---LEGCPKLARFEI 307 (401)
T ss_dssp CT--TCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT---TTTCTTCCEECC
T ss_pred CC--CccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH---hhCCccCCeEEe
Confidence 65 3555553 3444 678888886666666655 34678888888776532 0112222 778899999998
Q ss_pred eccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCCCccccCCC---CCcccc
Q 008856 440 DGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCPKLKYFPEK---GLPSSL 515 (551)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L 515 (551)
... +..++... |...++|+.+.+.. +++.+. ..+.++ +|+++.+.+ +.+..++.. +++.++
T Consensus 308 ~~~-----i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 308 PES-----IRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp CTT-----CCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTC
T ss_pred CCc-----eEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCc
Confidence 854 77777644 45668899999965 677776 557778 999999998 456666653 334678
Q ss_pred ceEeecCCc
Q 008856 516 LELWISGCP 524 (551)
Q Consensus 516 ~~L~i~~c~ 524 (551)
+.+.+-...
T Consensus 373 ~~l~vp~~~ 381 (401)
T 4fdw_A 373 TVIRVPAES 381 (401)
T ss_dssp CEEEECGGG
T ss_pred cEEEeCHHH
Confidence 888887643
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-10 Score=97.40 Aligned_cols=125 Identities=18% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCCcEEEEecCCCcc--cccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccc-cccccccCCcccc
Q 008856 311 TSLETISIYNCENLK--ILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKA-LPKGLHNLSTLQD 387 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~l~~L~~ 387 (551)
++|+.|++++| .+. .+|..+..+++|++|++++| .++.+ .....+++|+.|++++|. ++. +|..+.++++|+.
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCE
Confidence 34444455442 233 34444445555555555553 33333 222233455555555533 333 4444455666666
Q ss_pred eeccc-cccccc---cCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEe
Q 008856 388 LTIGG-ALLSLE---EDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTID 440 (551)
Q Consensus 388 L~l~~-~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 440 (551)
|++++ .+..++ ....+++|++|++++|+.. ...+.....+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 66666 444432 2245677777777777633 2222000115677888887754
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-07 Score=94.82 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=34.9
Q ss_pred cCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecc
Q 008856 52 AGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILS 129 (551)
Q Consensus 52 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 129 (551)
....+..|.+|+++.+.. .++.+ ...+|..+.+|+.+++.+ +++.++.. ++... .+|+.+.+.
T Consensus 63 g~~AF~~c~~L~~i~lp~--~i~~I---~~~aF~~c~~L~~i~lp~--~l~~I~~~----aF~~c----~~L~~i~~p 125 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS--TVREI---GEFAFENCSKLEIINIPD--SVKMIGRC----TFSGC----YALKSILLP 125 (394)
T ss_dssp CTTTTTTCTTEEEEECCT--TCCEE---CTTTTTTCTTCCEECCCT--TCCEECTT----TTTTC----TTCCCCCCC
T ss_pred HHHHhhCCCCceEEEeCC--CccCc---chhHhhCCCCCcEEEeCC--CceEccch----hhccc----ccchhhccc
Confidence 333345566777777654 45555 555666667777777654 25555442 23333 555555554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=95.88 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=25.7
Q ss_pred ccccccccccCCChhhhhh--hccCCCCcCEEEEcCCCCccccCCC-----CCccccceEeecCCc
Q 008856 466 TTLTSLRIEDFPNLERLSS--SIIDLRNLTELVLRGCPKLKYFPEK-----GLPSSLLELWISGCP 524 (551)
Q Consensus 466 ~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~ 524 (551)
++|++|++++ +.++.+|. .+..+++|++|++++| .+..++.. ..+++|+.|+++++.
T Consensus 88 ~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 4444444444 34444442 3444555555555552 23443331 113455555555554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-09 Score=92.25 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=58.8
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ ..+..+++|++|++++| .++.+++. .+..+ ++|++|++++| .+..+|.
T Consensus 42 ~~L~~L~Ls~-N~l~~~-----~~l~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l----~~L~~L~L~~N-~i~~~~~ 105 (176)
T 1a9n_A 42 DQFDAIDFSD-NEIRKL-----DGFPLLRRLKTLLVNNN-RICRIGEG----LDQAL----PDLTELILTNN-SLVELGD 105 (176)
T ss_dssp TCCSEEECCS-SCCCEE-----CCCCCCSSCCEEECCSS-CCCEECSC----HHHHC----TTCCEEECCSC-CCCCGGG
T ss_pred CCCCEEECCC-CCCCcc-----cccccCCCCCEEECCCC-cccccCcc----hhhcC----CCCCEEECCCC-cCCcchh
Confidence 4666666666 344433 23456666666666664 36655543 12444 66666666664 3455554
Q ss_pred --ccCCCCCCceEEEccCCCCcccCC-----CCCCCCCcEEEccCCC
Q 008856 140 --SSFSLSSLREIEIFKCSSLVSFPE-----VALPSKLKKIQIGECD 179 (551)
Q Consensus 140 --~~~~l~~L~~L~l~~c~~l~~~~~-----~~~~~~L~~L~l~~~~ 179 (551)
.+..+++|++|+++++ .+..++. +..+++|++|+++++.
T Consensus 106 ~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 106 LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5566666677766663 3444443 3456777777776654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-08 Score=90.07 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=59.5
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP- 138 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~- 138 (551)
++|++|++++ +.++.+ + ..+..+++|++|+++++ .++.+++. .+..+ ++|++|++++|. +..++
T Consensus 31 ~~l~~L~L~~-n~i~~i---p-~~~~~l~~L~~L~Ls~N-~i~~i~~~----~f~~l----~~L~~L~Ls~N~-l~~i~~ 95 (193)
T 2wfh_A 31 RDVTELYLDG-NQFTLV---P-KELSNYKHLTLIDLSNN-RISTLSNQ----SFSNM----TQLLTLILSYNR-LRCIPP 95 (193)
T ss_dssp TTCCEEECCS-SCCCSC---C-GGGGGCTTCCEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSSC-CCBCCT
T ss_pred CCCCEEECCC-CcCchh---H-HHhhcccCCCEEECCCC-cCCEeCHh----HccCC----CCCCEEECCCCc-cCEeCH
Confidence 4566666666 455554 4 34566666666666664 36655542 24444 666666666643 34333
Q ss_pred cccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 139 QSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
..+..+++|++|++++ +.++.++. +..+++|+.|++++|+
T Consensus 96 ~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 3456666666666666 34555554 3445666666666544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-09 Score=113.45 Aligned_cols=158 Identities=21% Similarity=0.133 Sum_probs=92.2
Q ss_pred CCcceEEeCCCCCcccccc---ccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccC
Q 008856 12 PALCKMEIGGCKKVVWRSA---TDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDIC 88 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 88 (551)
+.++.|++.++..-..... ..+|+.+++.+..........+...+..+++|++|++++ +.+..+ +... ..++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~-n~l~~l---~~~~-~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSN-LQIFNI---SANI-FKYD 247 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTT-SCCSCC---CGGG-GGCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCC-CCCCCC---Chhh-cCCC
Confidence 5677888877655443332 233445554443333333345555667789999999999 456666 6554 5899
Q ss_pred CccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCC-CCCC
Q 008856 89 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE-VALP 167 (551)
Q Consensus 89 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~ 167 (551)
+|++|+|++| .++.+|.. +..+ ++|++|+|++| .+..+|..+..+++|++|+|+++ .++.+|. ++.+
T Consensus 248 ~L~~L~Ls~N-~l~~lp~~-----~~~l----~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l 315 (727)
T 4b8c_D 248 FLTRLYLNGN-SLTELPAE-----IKNL----SNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNL 315 (727)
T ss_dssp SCSCCBCTTS-CCSCCCGG-----GGGG----TTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSC
T ss_pred CCCEEEeeCC-cCcccChh-----hhCC----CCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC-CCCccChhhhcC
Confidence 9999999996 58888765 6777 99999999996 46789999999999999999995 6788886 7789
Q ss_pred CCCcEEEccCCCCccccch
Q 008856 168 SKLKKIQIGECDALKSLPE 186 (551)
Q Consensus 168 ~~L~~L~l~~~~~l~~~~~ 186 (551)
++|++|++++|.-...++.
T Consensus 316 ~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 316 CNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TTCCCEECTTSCCCSHHHH
T ss_pred CCccEEeCCCCccCCCChH
Confidence 9999999999764333433
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.3e-07 Score=90.40 Aligned_cols=166 Identities=11% Similarity=0.182 Sum_probs=96.7
Q ss_pred CCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc
Q 008856 58 RIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL 137 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~ 137 (551)
.+..++++.+-+ .++.+ +..+|..+ +|+.+.+.. +++.+.... +.. .+|+.+.+.. .++.+
T Consensus 111 ~~~~l~~i~ip~--~i~~I---~~~aF~~~-~L~~i~l~~--~i~~I~~~a----F~~-----~~L~~i~lp~--~l~~I 171 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSI---PKDAFRNS-QIAKVVLNE--GLKSIGDMA----FFN-----STVQEIVFPS--TLEQL 171 (401)
T ss_dssp ECSSCSEEECCT--TCCEE---CTTTTTTC-CCSEEECCT--TCCEECTTT----TTT-----CCCCEEECCT--TCCEE
T ss_pred ecCCccEEEECC--ccCEe---hHhhcccC-CccEEEeCC--CccEECHHh----cCC-----CCceEEEeCC--CccEe
Confidence 356777777765 56666 66666654 688888775 377766642 322 3678888765 44555
Q ss_pred c-cccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccC
Q 008856 138 P-QSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 215 (551)
Q Consensus 138 ~-~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 215 (551)
+ ..+..|.+|+.+++.+ +.++.++. ...+.+|+.+.+.. .+..++...+ .++++|+.+++.. +++.++...+
T Consensus 172 ~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF-~~~~~L~~l~l~~--~l~~I~~~aF 245 (401)
T 4fdw_A 172 KEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAF-LKTSQLKTIEIPE--NVSTIGQEAF 245 (401)
T ss_dssp CSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTT-TTCTTCCCEECCT--TCCEECTTTT
T ss_pred hHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHh-hCCCCCCEEecCC--CccCcccccc
Confidence 4 4566778888888876 45666665 23367788887763 3555554322 2336677777654 3445544422
Q ss_pred C-CCccEEEEecCCCccccccccc-ccccCCCcccccCCccEEEEec
Q 008856 216 P-SSLKMLTIWYCDNIRTLTVEEG-IQCSSSSRRYTSYLLEHLGIRY 260 (551)
Q Consensus 216 ~-~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~ 260 (551)
. .+|+.+.+.. +++.+ +.+ |.. +++|+.+.+.+
T Consensus 246 ~~~~L~~i~lp~--~i~~I--~~~aF~~--------c~~L~~l~l~~ 280 (401)
T 4fdw_A 246 RESGITTVKLPN--GVTNI--ASRAFYY--------CPELAEVTTYG 280 (401)
T ss_dssp TTCCCSEEEEET--TCCEE--CTTTTTT--------CTTCCEEEEES
T ss_pred ccCCccEEEeCC--CccEE--ChhHhhC--------CCCCCEEEeCC
Confidence 1 4566666642 44444 332 222 44566666554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.8e-08 Score=86.88 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=66.9
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ 139 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~ 139 (551)
++|++|++++ +.++.+ +...+..+++|++|+++++ .++.+++. .+..+ ++|++|++++| .+..++.
T Consensus 28 ~~l~~L~l~~-n~l~~~---~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l----~~L~~L~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 28 SSATRLELES-NKLQSL---PHGVFDKLTQLTKLSLSQN-QIQSLPDG----VFDKL----TKLTILYLHEN-KLQSLPN 93 (177)
T ss_dssp TTCSEEECCS-SCCCCC---CTTTTTTCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCT
T ss_pred CCCcEEEeCC-CcccEe---CHHHhcCcccccEEECCCC-cceEeChh----HccCC----CccCEEECCCC-CccccCH
Confidence 5677777777 455655 5555667777777777774 46666553 23444 77777777774 3444443
Q ss_pred -ccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 140 -SSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 140 -~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
.+..+++|++|+++++ .++.++. +..+++|++|++++|.
T Consensus 94 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 3566777777777763 5566655 3456777777777755
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-08 Score=89.72 Aligned_cols=105 Identities=12% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCccEEEecCCCCchhhcccCc-chhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccc-
Q 008856 60 PKLEELKINNIQNETCIWKSHN-ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKL- 137 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~- 137 (551)
++|++|++++ +.++.+ +. ..+..+++|++|+++++ .++.+.+. ++..+ ++|++|++++|. +..+
T Consensus 29 ~~l~~L~l~~-n~i~~~---~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N~-l~~~~ 94 (192)
T 1w8a_A 29 LHTTELLLND-NELGRI---SSDGLFGRLPHLVKLELKRN-QLTGIEPN----AFEGA----SHIQELQLGENK-IKEIS 94 (192)
T ss_dssp TTCSEEECCS-CCCCSB---CCSCSGGGCTTCCEEECCSS-CCCCBCTT----TTTTC----TTCCEEECCSCC-CCEEC
T ss_pred CCCCEEECCC-CcCCcc---CCccccccCCCCCEEECCCC-CCCCcCHh----HcCCc----ccCCEEECCCCc-CCccC
Confidence 4888999988 566665 44 34788999999999985 57777553 36666 899999999864 4544
Q ss_pred ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 138 PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 138 ~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
+..+..+++|++|+++++ .++.+.+ +..+++|++|++++|.
T Consensus 95 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 95 NKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 445788899999999984 6666543 5668899999998876
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-09 Score=117.90 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=83.6
Q ss_pred hhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCcccccccccccc
Q 008856 302 SIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHN 381 (551)
Q Consensus 302 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 381 (551)
..+..+..++.|+.|++++ +.+..+|..+..+++|++|++++| .++.+|.....+++|+.|++++| .++.+|..+.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSN-LQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTT-SCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCC-CCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcC
Confidence 4455677888888888888 557777777778888888888884 56677765566678888888884 46688888888
Q ss_pred CCcccceeccc-cccccccC-CcCCCcceeEecCCchh
Q 008856 382 LSTLQDLTIGG-ALLSLEED-GLPTNLHSLVIRGNMEI 417 (551)
Q Consensus 382 l~~L~~L~l~~-~l~~l~~~-~~~~~L~~L~l~~~~~~ 417 (551)
+++|+.|++++ .+..+|.. +.+++|++|+|++|+..
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 88888888888 77777764 55788888888888843
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.8e-07 Score=88.61 Aligned_cols=300 Identities=15% Similarity=0.156 Sum_probs=139.8
Q ss_pred ccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEeccc
Q 008856 51 LAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSY 130 (551)
Q Consensus 51 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 130 (551)
+....+..|++|+.+++.+ .++.+ +..++..+.+|+.+.+.. .+..+.... +... . +....+..
T Consensus 85 I~~~aF~~c~~L~~i~lp~--~l~~I---~~~aF~~c~~L~~i~~p~--~l~~i~~~a----F~~~----~-~~~~~~~~ 148 (394)
T 4fs7_A 85 IGEFAFENCSKLEIINIPD--SVKMI---GRCTFSGCYALKSILLPL--MLKSIGVEA----FKGC----D-FKEITIPE 148 (394)
T ss_dssp ECTTTTTTCTTCCEECCCT--TCCEE---CTTTTTTCTTCCCCCCCT--TCCEECTTT----TTTC----C-CSEEECCT
T ss_pred cchhHhhCCCCCcEEEeCC--CceEc---cchhhcccccchhhcccC--ceeeeccee----eecc----c-ccccccCc
Confidence 3334445577777777754 45555 555666777777766654 244444321 2221 1 22222211
Q ss_pred Ccccccc-ccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCc
Q 008856 131 CEGLVKL-PQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL 207 (551)
Q Consensus 131 ~~~l~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 207 (551)
....+ ...+..+.+|+.+.+.+ .+..++. +..+++|+.+.+.. +++.+....+ ..+..|+.+.+.. ..
T Consensus 149 --~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F-~~~~~L~~i~~~~--~~ 219 (394)
T 4fs7_A 149 --GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR--NLKIIRDYCF-AECILLENMEFPN--SL 219 (394)
T ss_dssp --TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT--TCCEECTTTT-TTCTTCCBCCCCT--TC
T ss_pred --cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC--CceEeCchhh-ccccccceeecCC--Cc
Confidence 11222 22355566666666643 2333333 34456666665543 2333332211 1223444443332 11
Q ss_pred ceeccc-cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCC
Q 008856 208 TYIAAV-QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLP 286 (551)
Q Consensus 208 ~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 286 (551)
..+... ....+|+.+.+.. .++.+ ..... ..+..++.+.+... +.. ++...+.. .
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~--~~~~i--~~~~f-------~~~~~l~~~~~~~~--~~~-i~~~~F~~----------~ 275 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPD--SFTEL--GKSVF-------YGCTDLESISIQNN--KLR-IGGSLFYN----------C 275 (394)
T ss_dssp CEECTTTTTTCCCCEEEECT--TCCEE--CSSTT-------TTCSSCCEEEECCT--TCE-ECSCTTTT----------C
T ss_pred eEeehhhcccCCCceEEECC--Cceec--ccccc-------cccccceeEEcCCC--cce-eecccccc----------c
Confidence 112111 1123455555432 22222 22111 11445666665431 111 12111111 0
Q ss_pred CCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEE
Q 008856 287 PSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTAL 364 (551)
Q Consensus 287 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 364 (551)
..++.+...... .....+..+.+|+.+.+.. .+..+ ..++..+.+|+.+++.+ .++.+.. ....+++|+.+
T Consensus 276 ~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 276 SGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp TTCCEEEECSSE---ECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEE
T ss_pred cccceeccCcee---ecccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEE
Confidence 125555444331 1123456677777777754 35555 34556677788777754 2555544 33445677777
Q ss_pred EEccCccccccc-cccccCCcccceeccccccccccC-CcCCCcce
Q 008856 365 EIYDCKRLKALP-KGLHNLSTLQDLTIGGALLSLEED-GLPTNLHS 408 (551)
Q Consensus 365 ~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~l~~l~~~-~~~~~L~~ 408 (551)
.+.. .++.+. ..|.++++|+.+++...++.+... ..+++|+.
T Consensus 349 ~lp~--~l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 349 NFPL--SLRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CCCT--TCCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEE
T ss_pred EECc--cccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcE
Confidence 7754 255554 356777888888776644333321 23455554
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-06 Score=84.00 Aligned_cols=321 Identities=13% Similarity=0.187 Sum_probs=156.7
Q ss_pred cCCcCCCCC-CccEEEecCCCCchhhcccCcchhcccCCccEEeecCC--ccccccchhhhhhhhhhhhccCCCccEEec
Q 008856 52 AGPLKPRIP-KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSC--PKLQSLVAEEEKDQQQQLCQLSCRLEYLIL 128 (551)
Q Consensus 52 ~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~--~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L 128 (551)
....+..+. .|+++.+-+ .++.+ ...+|..+.+|+.+.+..+ ..++.+... ++... .+|+.+.+
T Consensus 55 g~~aF~~~~~~L~sI~iP~--svt~I---g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~----aF~~c----~~L~~i~~ 121 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPD--TVTEI---GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQ----AFMFC----SELTDIPI 121 (394)
T ss_dssp CTTTTTTCCSCCCEEEECT--TCCEE---CTTTTTTCTTCCEEEEGGGCCCCCCEECTT----TTTTC----TTCCBCGG
T ss_pred CHhhccCCCCcCEEEEECC--CeeEE---hHHHhhCCccCceEeecCCCCCeeeEechh----hchhc----ccceeecc
Confidence 333344453 588888865 57777 7777888888888888753 235666553 34333 67777776
Q ss_pred ccCccccccc-cccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCC
Q 008856 129 SYCEGLVKLP-QSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCR 205 (551)
Q Consensus 129 ~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 205 (551)
.. .+..++ ..+..+.+|+.+.+.. .+..+.. +..+.+|+.+.+.. .+..+....+. ...|+.+.+-.
T Consensus 122 ~~--~~~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~--~~~l~~i~ip~-- 191 (394)
T 4gt6_A 122 LD--SVTEIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT--GTALTQIHIPA-- 191 (394)
T ss_dssp GT--TCSEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT--TCCCSEEEECT--
T ss_pred CC--ccceehhhhhhhhcccccccccc--eeeeecccceecccccccccccc--eeeEecccccc--ccceeEEEECC--
Confidence 54 344444 3456778888888854 3444444 45577888877754 34444443221 25566666643
Q ss_pred CcceeccccC--CCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhcccc
Q 008856 206 SLTYIAAVQL--PSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVG 283 (551)
Q Consensus 206 ~~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 283 (551)
.++.+....+ ...++...... .....+ ...+.. ........+.. ++.
T Consensus 192 ~~~~i~~~af~~c~~l~~~~~~~-~~~~~~--~~~~~~--------~~~~~~~~~~~------------~~~-------- 240 (394)
T 4gt6_A 192 KVTRIGTNAFSECFALSTITSDS-ESYPAI--DNVLYE--------KSANGDYALIR------------YPS-------- 240 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEEECC-SSSCBS--SSCEEE--------ECTTSCEEEEE------------CCT--------
T ss_pred cccccccchhhhccccceecccc-cccccc--cceeec--------ccccccccccc------------ccc--------
Confidence 2233332211 23333333222 111111 111110 00000000000 000
Q ss_pred CCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCc
Q 008856 284 NLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKL 361 (551)
Q Consensus 284 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L 361 (551)
...+..+.+... ........|.++..|+.+.+.. . +..+ ...+..+++|+.+.+.. .++.++. ....+++|
T Consensus 241 --~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L 313 (394)
T 4gt6_A 241 --QREDPAFKIPNG-VARIETHAFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISL 313 (394)
T ss_dssp --TCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred --ccccceEEcCCc-ceEcccceeeecccccEEeccc-c-cceecCcccccccccccccCCC--cccccCceeecCCCCc
Confidence 001222222111 0111123566777777777654 2 3333 34455677777777753 3444544 33345577
Q ss_pred cEEEEccCccccccc-cccccCCcccceeccccccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEE
Q 008856 362 TALEIYDCKRLKALP-KGLHNLSTLQDLTIGGALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLT 438 (551)
Q Consensus 362 ~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 438 (551)
+.+.+.. .++.+. ..|.++.+|+.+.+...+..++.. ..+++|+.+++.++..... . +....+|+.+.
T Consensus 314 ~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~---~----~~~~~~L~~i~ 384 (394)
T 4gt6_A 314 KSIDIPE--GITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWN---A----ISTDSGLQNLP 384 (394)
T ss_dssp CEEECCT--TCCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHH---T----CBCCCCC----
T ss_pred CEEEeCC--cccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeehh---h----hhccCCCCEEE
Confidence 7777753 355553 346667777777775555555544 2356677777666542221 1 34455666665
Q ss_pred Eecc
Q 008856 439 IDGC 442 (551)
Q Consensus 439 l~~~ 442 (551)
+..+
T Consensus 385 i~~~ 388 (394)
T 4gt6_A 385 VAPG 388 (394)
T ss_dssp ----
T ss_pred eCCC
Confidence 5543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-08 Score=86.81 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=39.7
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|++|++++|.. +.++..+..+++|+.|++++ +.+..+ +..+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 32 ~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSCC-CSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcC-chhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 366666666543 34444555666666666666 445544 234555566666666653 3433332 222333455555
Q ss_pred Ecc
Q 008856 366 IYD 368 (551)
Q Consensus 366 l~~ 368 (551)
+++
T Consensus 109 L~~ 111 (193)
T 2wfh_A 109 LHG 111 (193)
T ss_dssp CCS
T ss_pred CCC
Confidence 544
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.68 E-value=6.2e-08 Score=86.78 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=37.0
Q ss_pred ccEEEeccCcchhhhHh-hhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 289 LKSLRVRYCSKLESIAE-RLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+++|++++|......+. .+..+++|++|++++ +.+..+ |..+..+++|++|++++| .++.++. ....+++|+.|+
T Consensus 31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 56666655533222111 245555666666655 344444 445555556666666553 3333332 122333455555
Q ss_pred Ecc
Q 008856 366 IYD 368 (551)
Q Consensus 366 l~~ 368 (551)
+++
T Consensus 109 L~~ 111 (192)
T 1w8a_A 109 LYD 111 (192)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.67 E-value=5e-10 Score=101.17 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=36.3
Q ss_pred cccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCC
Q 008856 326 ILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPT 404 (551)
Q Consensus 326 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~ 404 (551)
.+|..+..+++|++|++++| .++.++ ....+++|+.|++++| .++.+|..+..+++|+.|++++ .+..++....++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSGIEKLV 115 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence 33334444555555555552 333333 2222334555555542 2334444333444444444444 333333222234
Q ss_pred CcceeEecCCc
Q 008856 405 NLHSLVIRGNM 415 (551)
Q Consensus 405 ~L~~L~l~~~~ 415 (551)
+|++|++++|.
T Consensus 116 ~L~~L~l~~N~ 126 (198)
T 1ds9_A 116 NLRVLYMSNNK 126 (198)
T ss_dssp HSSEEEESEEE
T ss_pred CCCEEECCCCc
Confidence 44444444443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.9e-10 Score=99.49 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=100.9
Q ss_pred ccEEEeccCc-chhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 289 LKSLRVRYCS-KLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 289 L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
++...+.+.. .++.++..+..+++|++|++++ +.+..+| .+..+++|++|++++| .++.++.....+++|+.|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~-n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE-EEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCC-CCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 5555555442 2344555677788888888888 5576776 6777888999999884 566666544334589999998
Q ss_pred cCccccccccccccCCcccceeccc-ccccccc---CCcCCCcceeEecCCchhhhhhh------hhccccccCCCccEE
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEE---DGLPTNLHSLVIRGNMEIWKSMI------EWGRGFHRFSSLRHL 437 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~l~~L~~L 437 (551)
+| .++.+| .+..+++|+.|++++ .+..++. ...+++|++|++++|+....... .....+..+++|+.|
T Consensus 102 ~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CC-cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 85 566676 578889999999998 6666543 35678999999999985433211 001125678899988
Q ss_pred E
Q 008856 438 T 438 (551)
Q Consensus 438 ~ 438 (551)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=82.30 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=36.9
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccc-cccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|++|++++ +.+..++. .+..+++|++|++++| .++.++.. ...+++|+.|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 366666665543322233345555566666655 34444432 2345555555555552 33333332 12233444444
Q ss_pred Ecc
Q 008856 366 IYD 368 (551)
Q Consensus 366 l~~ 368 (551)
+++
T Consensus 107 l~~ 109 (177)
T 2o6r_A 107 LDT 109 (177)
T ss_dssp CCS
T ss_pred CcC
Confidence 444
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-05 Score=80.84 Aligned_cols=300 Identities=13% Similarity=0.151 Sum_probs=149.6
Q ss_pred ccCCcCCCCCCccEEEecCC--CCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEec
Q 008856 51 LAGPLKPRIPKLEELKINNI--QNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLIL 128 (551)
Q Consensus 51 ~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L 128 (551)
+....+..|.+|+++.+.+. ..++.+ ...+|..+.+|+.+.+.. .++.+... ++... .+|+.+.+
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~I---g~~aF~~c~~L~~i~~~~--~~~~I~~~----aF~~c----~~L~~i~l 144 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVKKI---GRQAFMFCSELTDIPILD--SVTEIDSE----AFHHC----EELDTVTI 144 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCCEE---CTTTTTTCTTCCBCGGGT--TCSEECTT----TTTTC----TTCCEEEC
T ss_pred EhHHHhhCCccCceEeecCCCCCeeeEe---chhhchhcccceeeccCC--ccceehhh----hhhhh----cccccccc
Confidence 33444566888888888762 346766 667778888888887765 46666553 24433 78888888
Q ss_pred ccCccccccc-cccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCC
Q 008856 129 SYCEGLVKLP-QSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRS 206 (551)
Q Consensus 129 ~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 206 (551)
.. .+..++ ..+..+.+|+.+.+.+ .++.+.. +....+|+.+.+.. .+..+....+ ..+..++....... .
T Consensus 145 p~--~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af-~~c~~l~~~~~~~~-~ 216 (394)
T 4gt6_A 145 PE--GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPA--KVTRIGTNAF-SECFALSTITSDSE-S 216 (394)
T ss_dssp CT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECT--TCCEECTTTT-TTCTTCCEEEECCS-S
T ss_pred cc--eeeeecccceecccccccccccc--eeeEeccccccccceeEEEECC--cccccccchh-hhccccceeccccc-c
Confidence 64 234443 3466778888888864 4555554 22345688877754 2223222211 12244555544331 1
Q ss_pred cceeccc----cCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccc
Q 008856 207 LTYIAAV----QLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEV 282 (551)
Q Consensus 207 ~~~~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~ 282 (551)
...+... .............+.....+.+|+++.. ++...|..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~--------------------------i~~~aF~~------- 263 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVAR--------------------------IETHAFDS------- 263 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEE--------------------------ECTTTTTT-------
T ss_pred cccccceeecccccccccccccccccccceEEcCCcceE--------------------------cccceeee-------
Confidence 1111100 0000000011111111111212222211 11111110
Q ss_pred cCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCC
Q 008856 283 GNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAK 360 (551)
Q Consensus 283 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~ 360 (551)
..+|+.+.+.... .......+.++++|+.+.+. +.+..+ ...+..+.+|+.+.+.+ .++.+.. ....|.+
T Consensus 264 ---c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 264 ---CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp ---CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred ---cccccEEeccccc-ceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 0124444443321 12223456677777777774 335555 34456677888888765 2555544 3444567
Q ss_pred ccEEEEccCccccccc-cccccCCcccceeccccccccccCCcCCCcceeEecCC
Q 008856 361 LTALEIYDCKRLKALP-KGLHNLSTLQDLTIGGALLSLEEDGLPTNLHSLVIRGN 414 (551)
Q Consensus 361 L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~l~~l~~~~~~~~L~~L~l~~~ 414 (551)
|+.+.+.. .++.+. ..|.++++|+.+++.+....+.....+.+|+.+.+..+
T Consensus 336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence 88888853 355564 35778888888888772222233344567777766543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.9e-08 Score=84.63 Aligned_cols=90 Identities=9% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhcc---CCCccEEecccCccccc
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL---SCRLEYLILSYCEGLVK 136 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~l~~ 136 (551)
.+|++|++++|. +++. ....+..+++|++|+|++|..+++ .++..++.. +++|++|+|++|+.++.
T Consensus 61 ~~L~~LDLs~~~-Itd~---GL~~L~~~~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI---GFDHMEGLQYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGG---GGGGGTTCSCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHH---HHHHhcCCCCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 468999999976 6665 445567889999999999887776 445555432 35788888888876653
Q ss_pred cc-cccCCCCCCceEEEccCCCCcc
Q 008856 137 LP-QSSFSLSSLREIEIFKCSSLVS 160 (551)
Q Consensus 137 ~~-~~~~~l~~L~~L~l~~c~~l~~ 160 (551)
-. ..+..+++|++|++++|+.++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 21 2345677777777777776664
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.8e-07 Score=77.43 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=65.7
Q ss_pred cEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccc-c
Q 008856 63 EELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS-S 141 (551)
Q Consensus 63 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~-~ 141 (551)
+.+++++ +.++.+ |... .++|++|+++++ .++.+++. .+..+ ++|++|+|++| .+..+|.. +
T Consensus 15 ~~l~~~~-n~l~~i---P~~~---~~~L~~L~Ls~N-~l~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~i~~~~~ 77 (174)
T 2r9u_A 15 TLVNCQN-IRLASV---PAGI---PTDKQRLWLNNN-QITKLEPG----VFDHL----VNLQQLYFNSN-KLTAIPTGVF 77 (174)
T ss_dssp SEEECCS-SCCSSC---CSCC---CTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCCTTTT
T ss_pred cEEEeCC-CCCCcc---CCCc---CCCCcEEEeCCC-CccccCHH----HhcCC----cCCCEEECCCC-CCCccChhHh
Confidence 5677776 556666 5442 267777887774 47666553 25555 77788888774 55666654 4
Q ss_pred CCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 142 FSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 142 ~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
..+++|++|++++ +.++.+++ +..+++|++|++++|.
T Consensus 78 ~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 78 DKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCCC
Confidence 6777888888877 46666665 5567788888887765
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=76.56 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=63.8
Q ss_pred ccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccc-
Q 008856 62 LEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQS- 140 (551)
Q Consensus 62 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~- 140 (551)
.+++++++ +.++.+ |... .++|++|+++++ .++.+++. .+..+ ++|++|++++| .+..++..
T Consensus 11 ~~~l~~s~-n~l~~i---p~~~---~~~l~~L~L~~N-~i~~~~~~----~~~~l----~~L~~L~Ls~N-~l~~l~~~~ 73 (170)
T 3g39_A 11 GTTVDCSG-KSLASV---PTGI---PTTTQVLYLYDN-QITKLEPG----VFDRL----TQLTRLDLDNN-QLTVLPAGV 73 (170)
T ss_dssp TTEEECTT-SCCSSC---CSCC---CTTCSEEECCSS-CCCCCCTT----TTTTC----TTCSEEECCSS-CCCCCCTTT
T ss_pred CCEEEeCC-CCcCcc---CccC---CCCCcEEEcCCC-cCCccChh----hhcCc----ccCCEEECCCC-CcCccChhh
Confidence 45677777 566666 5432 367777777774 47666553 24555 77777777774 44555543
Q ss_pred cCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 141 SFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 141 ~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
+..+++|++|++++ +.++.+++ +..+++|++|++++|.
T Consensus 74 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 74 FDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 46777777777777 45666655 4557777777777754
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=76.54 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=62.5
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
.++|++|++++ +.++.+ +...+..+++|++|+++++ +++.+++. .+..+ ++|++|+|++| .+..++
T Consensus 29 ~~~l~~L~L~~-N~i~~~---~~~~~~~l~~L~~L~Ls~N-~l~~l~~~----~f~~l----~~L~~L~L~~N-~l~~~~ 94 (170)
T 3g39_A 29 PTTTQVLYLYD-NQITKL---EPGVFDRLTQLTRLDLDNN-QLTVLPAG----VFDKL----TQLTQLSLNDN-QLKSIP 94 (170)
T ss_dssp CTTCSEEECCS-SCCCCC---CTTTTTTCTTCSEEECCSS-CCCCCCTT----TTTTC----TTCCEEECCSS-CCCCCC
T ss_pred CCCCcEEEcCC-CcCCcc---ChhhhcCcccCCEEECCCC-CcCccChh----hccCC----CCCCEEECCCC-ccCEeC
Confidence 37788888888 577766 6666788888888888885 58877764 24555 88888888885 556665
Q ss_pred c-ccCCCCCCceEEEccC
Q 008856 139 Q-SSFSLSSLREIEIFKC 155 (551)
Q Consensus 139 ~-~~~~l~~L~~L~l~~c 155 (551)
. .+..+++|++|+++++
T Consensus 95 ~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCCEEEeCCC
Confidence 4 4778888888888874
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=75.25 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=39.1
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccccc-ccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
+|++|++++|......+..+..+++|+.|++++ +.+..+|.. +..+++|++|++++ +.++.++.. ...+++|+.|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEE
Confidence 366666666544333344555555666666655 445555333 34455555555555 334444332 22333455555
Q ss_pred Ecc
Q 008856 366 IYD 368 (551)
Q Consensus 366 l~~ 368 (551)
+++
T Consensus 112 L~~ 114 (174)
T 2r9u_A 112 LYN 114 (174)
T ss_dssp CCS
T ss_pred eCC
Confidence 544
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.28 E-value=8.2e-07 Score=76.90 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=65.3
Q ss_pred ccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCcchhccc----CCccEEeecCCccccccchhh
Q 008856 33 HLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDI----CSLKRLTITSCPKLQSLVAEE 108 (551)
Q Consensus 33 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l----~~L~~L~l~~~~~l~~l~~~~ 108 (551)
+|+.|++++|......... ...|++|++|++++|..+++- .-..+..+ ++|++|+|++|.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~---gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----- 129 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDG---CLERLSQLENLQKSMLEMEIISCGNVTD----- 129 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHH---HHHHHHTCHHHHHHCCEEEEESCTTCCH-----
T ss_pred eEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHH---HHHHHHhcccccCCCCEEEcCCCCcCCH-----
Confidence 4788888888744433222 235899999999999988876 44445553 4799999999988877
Q ss_pred hhhhhhhhhccCCCccEEecccCccccc
Q 008856 109 EKDQQQQLCQLSCRLEYLILSYCEGLVK 136 (551)
Q Consensus 109 ~~~~~~~l~~~~~~L~~L~L~~~~~l~~ 136 (551)
.++..++ .+++|++|++++|+.++.
T Consensus 130 --~Gl~~L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 --KGIIALH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp --HHHHHGG-GCTTCCEEEEESCTTCCC
T ss_pred --HHHHHHh-cCCCCCEEECCCCCCCCc
Confidence 4455554 359999999999987764
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-07 Score=91.98 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=97.8
Q ss_pred ccccceeeeccccCccccee-ccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhh
Q 008856 31 TDHLGSQNSVVCRDASNQVF-LAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEE 109 (551)
Q Consensus 31 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 109 (551)
.+.|+.|++.+|........ +...+....++|++|++++| .+.+. +.......+++|++|++++| .++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~--~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPA--GLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHH--HHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHH--HHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 56677888877765433221 12222233578999999985 45432 02222345678899999986 4665443332
Q ss_pred hhhhhhhhccCCCccEEecccCcccc-----ccccccCCCCCCceEEEccCCCCcccC-----C-CCCCCCCcEEEccCC
Q 008856 110 KDQQQQLCQLSCRLEYLILSYCEGLV-----KLPQSSFSLSSLREIEIFKCSSLVSFP-----E-VALPSKLKKIQIGEC 178 (551)
Q Consensus 110 ~~~~~~l~~~~~~L~~L~L~~~~~l~-----~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~-~~~~~~L~~L~l~~~ 178 (551)
...+. ...++|++|+|++|. +. .++..+..+++|++|++++| .++... . +...++|++|++++|
T Consensus 147 ~~~L~---~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 147 RDLLL---HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHH---STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHH---hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 22221 123789999998874 33 23445567888999999885 454321 1 345678999999887
Q ss_pred CCccccchhhhh---ccCCCccEEEEecCC
Q 008856 179 DALKSLPEAWMC---DTNSSLEILSIHGCR 205 (551)
Q Consensus 179 ~~l~~~~~~~~~---~~~~~L~~L~l~~~~ 205 (551)
. +.+....... ..+++|++|++++|.
T Consensus 222 ~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 G-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp C-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred C-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 5 4443221111 133779999998864
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00024 Score=70.53 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=44.5
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
..+|+++.+.. .++.+ +..+|..+.+|+.+++.. .++.|...- +.. .+|+.+.+.. .++.++
T Consensus 45 ~~~i~~v~ip~--~vt~I---g~~aF~~C~~L~~I~lp~--~v~~Ig~~a----F~~-----c~l~~i~~~~--~l~~I~ 106 (379)
T 4h09_A 45 RDRISEVRVNS--GITSI---GEANFNSCYNMTKVTVAS--TVTSIGDGA----FAD-----TKLQSYTGME--RVKKFG 106 (379)
T ss_dssp GGGCSEEEECT--TEEEE---CTTTTTTCTTCCEEEECT--TCCEECTTT----TTT-----CCCCEEEECT--TCCEEC
T ss_pred ccCCEEEEeCC--CccCh---HHHHhhCCCCCCEEEeCC--cceEechhh----hcC-----CCCceEECCc--eeeEec
Confidence 45677777765 56666 666677777777777754 366665532 222 2455555542 344454
Q ss_pred cccCCCCCCceEEEcc
Q 008856 139 QSSFSLSSLREIEIFK 154 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~ 154 (551)
.......+|+++.+.+
T Consensus 107 ~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 107 DYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTTTCCCSEEECCT
T ss_pred cceeccCCcccccCCC
Confidence 4433344667666653
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-06 Score=85.26 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=21.0
Q ss_pred cccccccccccCCChhh-----hhhhccCCCCcCEEEEcCC
Q 008856 465 PTTLTSLRIEDFPNLER-----LSSSIIDLRNLTELVLRGC 500 (551)
Q Consensus 465 ~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~c 500 (551)
+++|++|+++. +.+.. ++..+.++++|+.|++++|
T Consensus 278 ~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 34666666655 44443 3334456777888888775
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00012 Score=72.70 Aligned_cols=287 Identities=15% Similarity=0.154 Sum_probs=146.0
Q ss_pred eccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecc
Q 008856 50 FLAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILS 129 (551)
Q Consensus 50 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 129 (551)
.++...+..|.+|+++++.. .++.+ ...+|..+ +|+.+.+.. +++.+.... +. ..+|+.+.+.
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~--~v~~I---g~~aF~~c-~l~~i~~~~--~l~~I~~~a----F~-----~~~L~~i~lp 121 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAS--TVTSI---GDGAFADT-KLQSYTGME--RVKKFGDYV----FQ-----GTDLDDFEFP 121 (379)
T ss_dssp EECTTTTTTCTTCCEEEECT--TCCEE---CTTTTTTC-CCCEEEECT--TCCEECTTT----TT-----TCCCSEEECC
T ss_pred ChHHHHhhCCCCCCEEEeCC--cceEe---chhhhcCC-CCceEECCc--eeeEeccce----ec-----cCCcccccCC
Confidence 45555677899999999975 57777 77777776 788888764 477766542 32 1579999997
Q ss_pred cCccccccccccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCc
Q 008856 130 YCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSL 207 (551)
Q Consensus 130 ~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 207 (551)
+ .+..+........+|+.+.+.. .++.+.. +..+.+++.+.+............ ...............|
T Consensus 122 ~--~~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 193 (379)
T 4h09_A 122 G--ATTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENY-VLYNKNKTILESYPAA--- 193 (379)
T ss_dssp T--TCCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETT-EEEETTSSEEEECCTT---
T ss_pred C--ccccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccc-eecccccceecccccc---
Confidence 5 3445554444444677776653 4555443 455777777777653322111110 0000000000001111
Q ss_pred ceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCC
Q 008856 208 TYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPP 287 (551)
Q Consensus 208 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~ 287 (551)
..+..+.+.. ....+. ...+.. +.+++.+.+.. .+.. ++...+.. ..
T Consensus 194 ---------~~~~~~~~~~--~~~~i~-~~~f~~--------~~~l~~i~~~~--~~~~-i~~~~f~~----------~~ 240 (379)
T 4h09_A 194 ---------KTGTEFTIPS--TVKTVT-AYGFSY--------GKNLKKITITS--GVTT-LGDGAFYG----------MK 240 (379)
T ss_dssp ---------CCCSEEECCT--TCCEEC-TTTTTT--------CSSCSEEECCT--TCCE-ECTTTTTT----------CS
T ss_pred ---------cccccccccc--ceeEEe-eccccc--------ccccceeeecc--ceeE-EccccccC----------Cc
Confidence 1122221111 111110 011111 23344444322 1222 11111111 01
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
+|+.+.+..+ ........+.++.+|+.+.+.. .+..+ ...+..+++|+.+.+.+ ..++.+.. ....+++|+.+.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEE
T ss_pred cceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCCCCEEE
Confidence 3555555443 1111233566677777777753 35554 33455677788887766 34555544 344556788877
Q ss_pred EccCccccccc-cccccCCcccceeccccccccccC
Q 008856 366 IYDCKRLKALP-KGLHNLSTLQDLTIGGALLSLEED 400 (551)
Q Consensus 366 l~~c~~l~~~~-~~~~~l~~L~~L~l~~~l~~l~~~ 400 (551)
+.. .++.+. ..|.++.+|+.+.+...++.++..
T Consensus 317 lp~--~l~~I~~~aF~~C~~L~~i~ip~~v~~I~~~ 350 (379)
T 4h09_A 317 LPT--ALKTIQVYAFKNCKALSTISYPKSITLIESG 350 (379)
T ss_dssp CCT--TCCEECTTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred cCc--cccEEHHHHhhCCCCCCEEEECCccCEEchh
Confidence 753 355554 357778888888876555555544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.08 E-value=9.3e-06 Score=79.84 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=60.1
Q ss_pred EEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-cccC
Q 008856 64 ELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP-QSSF 142 (551)
Q Consensus 64 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~-~~~~ 142 (551)
.++.++.++++.+ |. +..+++|+.|+|++++.++.+++. .+..+ ++|+.|+|++| .+..++ ..+.
T Consensus 12 ~v~~~~~n~l~~i---p~--l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l----~~L~~L~l~~N-~l~~~~~~~~~ 77 (347)
T 2ifg_A 12 GLRCTRDGALDSL---HH--LPGAENLTELYIENQQHLQHLELR----DLRGL----GELRNLTIVKS-GLRFVAPDAFH 77 (347)
T ss_dssp CEECCSSCCCTTT---TT--SCSCSCCSEEECCSCSSCCEECGG----GSCSC----CCCSEEECCSS-CCCEECTTGGG
T ss_pred EEEcCCCCCCCcc---CC--CCCCCCeeEEEccCCCCCCCcChh----Hhccc----cCCCEEECCCC-ccceeCHHHhc
Confidence 3455553356666 54 566677777777753456666653 25555 77777777775 344443 3456
Q ss_pred CCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCC
Q 008856 143 SLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECD 179 (551)
Q Consensus 143 ~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~ 179 (551)
.+++|++|+|++ +.++.+++ ......|+.|++.+|.
T Consensus 78 ~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 78 FTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCC
Confidence 677777777776 45666664 2222237777776654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-06 Score=86.65 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=108.2
Q ss_pred CCCcceEEeCCCCCcc-----ccc----cccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhhcccCc
Q 008856 11 LPALCKMEIGGCKKVV-----WRS----ATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCIWKSHN 81 (551)
Q Consensus 11 ~~~L~~L~l~~~~~~~-----~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 81 (551)
+++|++|++++|.... +.. ...+|+.|++.+|........ .+...+++|++|++++| .+.+. ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~---~l~~~L~~L~~L~Ls~n-~l~~~---~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR---TLLPVFLRARKLGLQLN-SLGPE---AC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHH---HTHHHHHTEEEEECCSS-CCCHH---HH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHH---HHHHHHHhccHhhcCCC-CCCHH---HH
Confidence 5689999999997544 111 236899999999975443221 11223578999999995 66544 32
Q ss_pred chh-----cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-----ccccccCCCCCCceEE
Q 008856 82 ELL-----QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV-----KLPQSSFSLSSLREIE 151 (551)
Q Consensus 82 ~~~-----~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-----~~~~~~~~l~~L~~L~ 151 (551)
..+ ...++|++|++++|. ++......++.++... ++|++|+|++|. +. .+...+...++|++|+
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~----~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGN----TSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTC----SSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEE
T ss_pred HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcC----CCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEE
Confidence 333 246889999999974 7765544444445545 899999999975 33 2345667788999999
Q ss_pred EccCCCCcccC-----C-CCCCCCCcEEEccCCCCccccc
Q 008856 152 IFKCSSLVSFP-----E-VALPSKLKKIQIGECDALKSLP 185 (551)
Q Consensus 152 l~~c~~l~~~~-----~-~~~~~~L~~L~l~~~~~l~~~~ 185 (551)
+++| .++... . +...++|++|++++|. +....
T Consensus 218 Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g 255 (372)
T 3un9_A 218 VAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSEG 255 (372)
T ss_dssp CCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHH
Confidence 9996 455322 1 2346889999999976 54433
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=78.87 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=22.0
Q ss_pred CccEEEeccCcchhh----hHhhhcCCCCCcEEEEecC
Q 008856 288 SLKSLRVRYCSKLES----IAERLDNNTSLETISIYNC 321 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~ 321 (551)
+|++|+++.|..... +...+..+++|+.|++++|
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 388888877754433 2333345678888888774
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.7e-05 Score=76.50 Aligned_cols=90 Identities=27% Similarity=0.252 Sum_probs=71.0
Q ss_pred ccCCcCCCCCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEeccc
Q 008856 51 LAGPLKPRIPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSY 130 (551)
Q Consensus 51 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 130 (551)
+|. ...+++|++|++++.+.++.+ +...|..+++|+.|+|+++ .++.+++. .+..+ ++|++|+|++
T Consensus 24 ip~--l~~~~~L~~L~l~~~n~l~~~---~~~~~~~l~~L~~L~l~~N-~l~~~~~~----~~~~l----~~L~~L~l~~ 89 (347)
T 2ifg_A 24 LHH--LPGAENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIVKS-GLRFVAPD----AFHFT----PRLSRLNLSF 89 (347)
T ss_dssp TTT--SCSCSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECCSS-CCCEECTT----GGGSC----SCCCEEECCS
T ss_pred cCC--CCCCCCeeEEEccCCCCCCCc---ChhHhccccCCCEEECCCC-ccceeCHH----HhcCC----cCCCEEeCCC
Confidence 454 556789999999976788888 7777889999999999996 58888774 36667 9999999998
Q ss_pred CccccccccccCCCCCCceEEEccC
Q 008856 131 CEGLVKLPQSSFSLSSLREIEIFKC 155 (551)
Q Consensus 131 ~~~l~~~~~~~~~l~~L~~L~l~~c 155 (551)
| .+..+|..+.....|++|++.++
T Consensus 90 N-~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp S-CCSCCCSTTTCSCCCCEEECCSS
T ss_pred C-ccceeCHHHcccCCceEEEeeCC
Confidence 5 66777765444444999999884
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=6e-05 Score=66.62 Aligned_cols=91 Identities=12% Similarity=-0.067 Sum_probs=49.9
Q ss_pred CCCccEEEecCCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEec--ccCcccc
Q 008856 59 IPKLEELKINNIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLIL--SYCEGLV 135 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L--~~~~~l~ 135 (551)
.++|++|+++++ .+.+- .......+...+.|++|+|++|. +..-....++.++... ++|++|+| ++|..-.
T Consensus 64 ~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n----~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 64 NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSN----TSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGC----SSCCEEECCCCSSCCCH
T ss_pred CCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhC----CCceEEEecCCCCCCCH
Confidence 567777888774 44432 00011223445778888888753 5553333233333333 67888888 5543211
Q ss_pred ----ccccccCCCCCCceEEEccC
Q 008856 136 ----KLPQSSFSLSSLREIEIFKC 155 (551)
Q Consensus 136 ----~~~~~~~~l~~L~~L~l~~c 155 (551)
.+...+...++|++|+++++
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHHhCCCcCEEeccCC
Confidence 13344555677888888764
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00013 Score=64.44 Aligned_cols=117 Identities=22% Similarity=0.119 Sum_probs=75.8
Q ss_pred CCCCCccEEEecCCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc
Q 008856 57 PRIPKLEELKINNIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV 135 (551)
Q Consensus 57 ~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~ 135 (551)
...++|++|+++++..+.+- .......+...+.|++|+|++|. +.+-....++..+... ++|++|+|++|..-.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n----~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVN----NTLKSLNVESNFISG 107 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHC----SSCCEEECCSSCCCH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhC----CCcCEEECcCCcCCH
Confidence 44789999999986355432 00012334567899999999974 6654333333344433 899999999974322
Q ss_pred ----ccccccCCCCCCceEEE--ccCCCCccc-----CC-CCCCCCCcEEEccCCC
Q 008856 136 ----KLPQSSFSLSSLREIEI--FKCSSLVSF-----PE-VALPSKLKKIQIGECD 179 (551)
Q Consensus 136 ----~~~~~~~~l~~L~~L~l--~~c~~l~~~-----~~-~~~~~~L~~L~l~~~~ 179 (551)
.+...+...++|++|++ ++ +.+..- .. +...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 24556777889999999 55 345432 11 2346789999998865
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=60.79 Aligned_cols=82 Identities=21% Similarity=0.099 Sum_probs=50.1
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCC--CCceEEEccCCCCcccC
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLS--SLREIEIFKCSSLVSFP 162 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~--~L~~L~l~~c~~l~~~~ 162 (551)
..+++|+.|+|+++ .++.++.-. ..+..+ ++|+.|+|++| .+..+. .+..+. +|++|++++++-...++
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~--~~~~~l----~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMS--SIVQKA----PNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGT--THHHHS----TTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCC-CCCCCccch--hHHhhC----CCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 45788888888885 477664310 123344 88888888875 444432 233333 88888888865433333
Q ss_pred C--------CCCCCCCcEEEc
Q 008856 163 E--------VALPSKLKKIQI 175 (551)
Q Consensus 163 ~--------~~~~~~L~~L~l 175 (551)
. +..+|+|+.|+-
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESS
T ss_pred cchhHHHHHHHHCcccCeECC
Confidence 1 345788887763
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0011 Score=61.82 Aligned_cols=59 Identities=19% Similarity=0.099 Sum_probs=40.7
Q ss_pred cCCCccEEecccCccccc---cccccCCCCCCceEEEccCCCCcccCCCCCCC--CCcEEEccCCC
Q 008856 119 LSCRLEYLILSYCEGLVK---LPQSSFSLSSLREIEIFKCSSLVSFPEVALPS--KLKKIQIGECD 179 (551)
Q Consensus 119 ~~~~L~~L~L~~~~~l~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--~L~~L~l~~~~ 179 (551)
.+++|++|+|++| .+.. ++..+..+++|+.|+|++ +.++.+..+..+. +|++|++++|+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCc
Confidence 4588999999885 3443 334556788888888887 5666654444444 78888888766
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=91.46 E-value=0.16 Score=44.51 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=46.2
Q ss_pred CCCccEEEecCCCCchhhcccCcc----hhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcc-
Q 008856 59 IPKLEELKINNIQNETCIWKSHNE----LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEG- 133 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~----~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~- 133 (551)
-..|++|+++++ .+.+. .+. .+..-..|++|+|+++ .+..-....++.++. ....|++|+|+++..
T Consensus 69 N~~L~~L~L~~n-~igd~---ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~----~N~tL~~L~L~n~~~~ 139 (197)
T 1pgv_A 69 SKHIEKFSLANT-AISDS---EARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTL----VTQSIVEFKADNQRQS 139 (197)
T ss_dssp CSCCCEEECTTS-CCBHH---HHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTT----TTCCCSEEECCCCSSC
T ss_pred CCCcCEEEccCC-CCChH---HHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHh----hCCceeEEECCCCcCc
Confidence 356777777773 44443 222 2334567888888875 355433322222222 236688888875321
Q ss_pred -cc-----ccccccCCCCCCceEEEcc
Q 008856 134 -LV-----KLPQSSFSLSSLREIEIFK 154 (551)
Q Consensus 134 -l~-----~~~~~~~~l~~L~~L~l~~ 154 (551)
+. .+...+..-+.|++|+++.
T Consensus 140 ~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 140 VLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 11 1223344456777777754
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=0.18 Score=41.05 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=24.9
Q ss_pred ccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 464 LPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 464 ~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
++++|+.|+|++ |+++.++ ..+..+++|++|++.+++
T Consensus 29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 355677777777 6777776 345667777777777644
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.33 Score=42.49 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=18.2
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccC
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYC 131 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~ 131 (551)
.-..|+.|+|++|. +.+-....++..+..= +.|++|+|++|
T Consensus 68 ~N~~L~~L~L~~n~-igd~ga~alA~aL~~N----~tL~~L~L~~N 108 (197)
T 1pgv_A 68 NSKHIEKFSLANTA-ISDSEARGLIELIETS----PSLRVLNVESN 108 (197)
T ss_dssp TCSCCCEEECTTSC-CBHHHHTTHHHHHHHC----SSCCEEECCSS
T ss_pred hCCCcCEEEccCCC-CChHHHHHHHHHHhcC----CccCeEecCCC
Confidence 34455555555542 4443332222222222 55555555553
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=89.91 E-value=0.47 Score=38.47 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=15.2
Q ss_pred CccEEEecCCCCchhhcccCcchhcccCCccEEeecC
Q 008856 61 KLEELKINNIQNETCIWKSHNELLQDICSLKRLTITS 97 (551)
Q Consensus 61 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 97 (551)
+|++|+|++ +.++.+ +...|..+++|+.|+|.+
T Consensus 32 ~l~~L~Ls~-N~l~~l---~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTG-NNLTAL---PPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTT-SCCSSC---CTTTGGGCTTCCEEECCS
T ss_pred CCCEEECCC-CcCCcc---ChhhhhhccccCEEEecC
Confidence 344444444 344444 444444444444444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 551 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.004 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.004
Identities = 29/225 (12%), Positives = 66/225 (29%), Gaps = 17/225 (7%)
Query: 117 CQLSCRLEYLILSYCEGLVKLPQSSFS-LSSLREIEIFKCSSLVSFPE-VALPSKLKKIQ 174
R++++ LS V S S L+ + + +A S L ++
Sbjct: 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
Query: 175 IGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLT 234
+ C + + S L+ L++ C T + + + T
Sbjct: 102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH--------VQVAVAHVSETITQL 153
Query: 235 VEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRV 294
G + + ++ + + + + KN+ L+ L +
Sbjct: 154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ------LNYLQHLSL 207
Query: 295 RYCSKL-ESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLR 338
C + L +L+T+ ++ L L L+
Sbjct: 208 SRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 551 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.83 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.83 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.7 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.65 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.65 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.62 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.61 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.58 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.54 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.53 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.52 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.45 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.44 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.42 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.38 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.38 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.37 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.32 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.32 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.3 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.28 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.25 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.23 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.21 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.92 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.92 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.9 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.9 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.87 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.8 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.67 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.67 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.61 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.42 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.4 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.3 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.98 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.72 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.61 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.46 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.41 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.26 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.83 E-value=5.6e-19 Score=175.71 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=43.2
Q ss_pred ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCC
Q 008856 86 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVA 165 (551)
Q Consensus 86 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 165 (551)
.+.+|++|+++++ +++.+. ++..+ ++|++|++++| .++.++ .+..+++|++|+++++ .+..+++++
T Consensus 42 ~l~~l~~L~l~~~-~I~~l~------gl~~L----~nL~~L~Ls~N-~l~~l~-~l~~L~~L~~L~L~~n-~i~~i~~l~ 107 (384)
T d2omza2 42 DLDQVTTLQADRL-GIKSID------GVEYL----NNLTQINFSNN-QLTDIT-PLKNLTKLVDILMNNN-QIADITPLA 107 (384)
T ss_dssp HHTTCCEEECCSS-CCCCCT------TGGGC----TTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred HhCCCCEEECCCC-CCCCcc------ccccC----CCCCEEeCcCC-cCCCCc-cccCCccccccccccc-ccccccccc
Confidence 3455666666654 355442 14444 66666666664 345454 2555666666666663 344555555
Q ss_pred CCCCCcEEEccCC
Q 008856 166 LPSKLKKIQIGEC 178 (551)
Q Consensus 166 ~~~~L~~L~l~~~ 178 (551)
.+++|+.++++++
T Consensus 108 ~l~~L~~L~~~~~ 120 (384)
T d2omza2 108 NLTNLTGLTLFNN 120 (384)
T ss_dssp TCTTCCEEECCSS
T ss_pred ccccccccccccc
Confidence 5666666666553
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.83 E-value=5.5e-19 Score=175.77 Aligned_cols=339 Identities=18% Similarity=0.174 Sum_probs=204.0
Q ss_pred CCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEE
Q 008856 121 CRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILS 200 (551)
Q Consensus 121 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 200 (551)
.+|++|+++++ .++.+ +++..+++|++|+++++ .++.+++++.+++|++|++++|. +..++.. ..+++|+.|+
T Consensus 44 ~~l~~L~l~~~-~I~~l-~gl~~L~nL~~L~Ls~N-~l~~l~~l~~L~~L~~L~L~~n~-i~~i~~l---~~l~~L~~L~ 116 (384)
T d2omza2 44 DQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITPL---ANLTNLTGLT 116 (384)
T ss_dssp TTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCCEEE
T ss_pred CCCCEEECCCC-CCCCc-cccccCCCCCEEeCcCC-cCCCCccccCCcccccccccccc-ccccccc---cccccccccc
Confidence 79999999985 55666 47889999999999995 78899888899999999999976 5555543 4558899999
Q ss_pred EecCCCcceeccccCCCCccEEEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhc
Q 008856 201 IHGCRSLTYIAAVQLPSSLKMLTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESL 280 (551)
Q Consensus 201 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l 280 (551)
+.++ .++.+........+.......+ .+..+ ...... ............ ..+.. + ...+
T Consensus 117 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~~~~~-------~~~~~~~~~~~~-~~~~~-~--~~~~------ 175 (384)
T d2omza2 117 LFNN-QITDIDPLKNLTNLNRLELSSN-TISDI--SALSGL-------TSLQQLSFGNQV-TDLKP-L--ANLT------ 175 (384)
T ss_dssp CCSS-CCCCCGGGTTCTTCSEEEEEEE-EECCC--GGGTTC-------TTCSEEEEEESC-CCCGG-G--TTCT------
T ss_pred cccc-cccccccccccccccccccccc-ccccc--cccccc-------cccccccccccc-chhhh-h--cccc------
Confidence 9874 4445544444445555554432 22211 000000 000111111111 11111 0 0011
Q ss_pred cccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCC
Q 008856 281 EVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAK 360 (551)
Q Consensus 281 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 360 (551)
.........+.. ........+++++.+.+++ +.+..++. ...+++|++|++++| .++.++. ...+++
T Consensus 176 -------~~~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~-n~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-l~~l~~ 242 (384)
T d2omza2 176 -------TLERLDISSNKV--SDISVLAKLTNLESLIATN-NQISDITP-LGILTNLDELSLNGN-QLKDIGT-LASLTN 242 (384)
T ss_dssp -------TCCEEECCSSCC--CCCGGGGGCTTCSEEECCS-SCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTT
T ss_pred -------cccccccccccc--ccccccccccccceeeccC-CccCCCCc-ccccCCCCEEECCCC-CCCCcch-hhcccc
Confidence 122222222221 1223345566777777776 44554422 344667777777774 4444432 223347
Q ss_pred ccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEE
Q 008856 361 LTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTI 439 (551)
Q Consensus 361 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 439 (551)
|+.+++++|. ++.++. +..+++|+.|++++ .+..++....++.++.+++.+|.... . .. +..++++++|++
T Consensus 243 L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~-~-~~----~~~~~~l~~L~l 314 (384)
T d2omza2 243 LTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED-I-SP----ISNLKNLTYLTL 314 (384)
T ss_dssp CSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC-C-GG----GGGCTTCSEEEC
T ss_pred cchhccccCc-cCCCCc-ccccccCCEeeccCcccCCCCcccccccccccccccccccc-c-cc----cchhcccCeEEC
Confidence 7777777743 454443 66677777777777 66666555566777777777776322 1 11 556778888888
Q ss_pred eccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEe
Q 008856 440 DGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELW 519 (551)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 519 (551)
++|. +..++.- ..+++|++|++++ +.++.++ .+.++++|++|++++| +++.++...-+++|+.|+
T Consensus 315 s~n~----l~~l~~l--------~~l~~L~~L~L~~-n~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~ 379 (384)
T d2omza2 315 YFNN----ISDISPV--------SSLTKLQRLFFAN-NKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLG 379 (384)
T ss_dssp CSSC----CSCCGGG--------GGCTTCCEEECCS-SCCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEE
T ss_pred CCCC----CCCCccc--------ccCCCCCEEECCC-CCCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEee
Confidence 8773 5555432 2567888888888 4777776 5677888888888874 577665444456888888
Q ss_pred ecCC
Q 008856 520 ISGC 523 (551)
Q Consensus 520 i~~c 523 (551)
++++
T Consensus 380 L~~N 383 (384)
T d2omza2 380 LNDQ 383 (384)
T ss_dssp CCCE
T ss_pred CCCC
Confidence 8754
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.70 E-value=1.3e-15 Score=145.99 Aligned_cols=246 Identities=16% Similarity=0.190 Sum_probs=132.9
Q ss_pred ccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccccc
Q 008856 62 LEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSS 141 (551)
Q Consensus 62 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~ 141 (551)
.+.++-++ .+++.+ |... .+++++|+++++ +++.+++. ++..+ ++|++|+++++......|..+
T Consensus 12 ~~~~~C~~-~~L~~l---P~~l---~~~l~~L~Ls~N-~i~~l~~~----~f~~l----~~L~~L~l~~n~~~~i~~~~f 75 (305)
T d1xkua_ 12 LRVVQCSD-LGLEKV---PKDL---PPDTALLDLQNN-KITEIKDG----DFKNL----KNLHTLILINNKISKISPGAF 75 (305)
T ss_dssp TTEEECTT-SCCCSC---CCSC---CTTCCEEECCSS-CCCCBCTT----TTTTC----TTCCEEECCSSCCCCBCTTTT
T ss_pred CCEEEecC-CCCCcc---CCCC---CCCCCEEECcCC-cCCCcChh----Hhhcc----ccccccccccccccccchhhh
Confidence 34444444 345555 5432 245666666664 46666552 24444 666666666654333334456
Q ss_pred CCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccE
Q 008856 142 FSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKM 221 (551)
Q Consensus 142 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 221 (551)
..+++|++|+++++ +++.++. ...+.++.|.+.++. +..++...+ .... ....
T Consensus 76 ~~l~~L~~L~l~~n-~l~~l~~-~~~~~l~~L~~~~n~-l~~l~~~~~-~~~~-----------------------~~~~ 128 (305)
T d1xkua_ 76 APLVKLERLYLSKN-QLKELPE-KMPKTLQELRVHENE-ITKVRKSVF-NGLN-----------------------QMIV 128 (305)
T ss_dssp TTCTTCCEEECCSS-CCSBCCS-SCCTTCCEEECCSSC-CCBBCHHHH-TTCT-----------------------TCCE
T ss_pred hCCCccCEecccCC-ccCcCcc-chhhhhhhhhccccc-hhhhhhhhh-hccc-----------------------cccc
Confidence 66666666666663 4555553 233455666655532 333222211 1112 2333
Q ss_pred EEEecCCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchh
Q 008856 222 LTIWYCDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLE 301 (551)
Q Consensus 222 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 301 (551)
+.+..+........+..+.. +++|+.+++.++ .+.. ++...++ +|++|++++|....
T Consensus 129 l~~~~n~~~~~~~~~~~~~~--------l~~L~~l~l~~n-~l~~-l~~~~~~-------------~L~~L~l~~n~~~~ 185 (305)
T d1xkua_ 129 VELGTNPLKSSGIENGAFQG--------MKKLSYIRIADT-NITT-IPQGLPP-------------SLTELHLDGNKITK 185 (305)
T ss_dssp EECCSSCCCGGGBCTTGGGG--------CTTCCEEECCSS-CCCS-CCSSCCT-------------TCSEEECTTSCCCE
T ss_pred cccccccccccCCCcccccc--------ccccCccccccC-Cccc-cCcccCC-------------ccCEEECCCCcCCC
Confidence 33332211111100222222 445777777663 3443 3333333 48888888877666
Q ss_pred hhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccc
Q 008856 302 SIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALP 376 (551)
Q Consensus 302 ~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 376 (551)
..+..+..++.+++|++++ +.+..+ +..+..+++|++|++++| +++.+|.....+++|++|+++++ +++.++
T Consensus 186 ~~~~~~~~~~~l~~L~~s~-n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~ 258 (305)
T d1xkua_ 186 VDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIG 258 (305)
T ss_dssp ECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CChhHhhcccccccccccc-ccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccC
Confidence 6666777788888888887 456655 555667778888888874 66666665555667777777763 455554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.65 E-value=1.9e-14 Score=140.44 Aligned_cols=71 Identities=27% Similarity=0.444 Sum_probs=51.9
Q ss_pred cCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCC
Q 008856 430 RFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEK 509 (551)
Q Consensus 430 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 509 (551)
.+++|++|++++|. +..+|. .+++|+.|++++ ++++.+|. .+++|++|++++|+ ++.+|.
T Consensus 282 ~~~~L~~L~Ls~N~----l~~lp~----------~~~~L~~L~L~~-N~L~~l~~---~~~~L~~L~L~~N~-L~~lp~- 341 (353)
T d1jl5a_ 282 LPPSLEELNVSNNK----LIELPA----------LPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYNP-LREFPD- 341 (353)
T ss_dssp CCTTCCEEECCSSC----CSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSC-CSSCCC-
T ss_pred cCCCCCEEECCCCc----cCcccc----------ccCCCCEEECCC-CcCCcccc---ccCCCCEEECcCCc-CCCCCc-
Confidence 45788888888873 677775 346888888887 57777763 24678888888864 888876
Q ss_pred CCccccceEeec
Q 008856 510 GLPSSLLELWIS 521 (551)
Q Consensus 510 ~~~~~L~~L~i~ 521 (551)
.+.+|+.|.+.
T Consensus 342 -~~~~L~~L~~~ 352 (353)
T d1jl5a_ 342 -IPESVEDLRMN 352 (353)
T ss_dssp -CCTTCCEEECC
T ss_pred -cccccCeeECc
Confidence 56678877764
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.65 E-value=5.3e-15 Score=141.70 Aligned_cols=243 Identities=15% Similarity=0.174 Sum_probs=137.0
Q ss_pred CceEEEccCCCCcccCCCCCCCCCcEEEccCCCCccccchhhhhccCCCccEEEEecCCCcceeccccCCCCccEEEEec
Q 008856 147 LREIEIFKCSSLVSFPEVALPSKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPSSLKMLTIWY 226 (551)
Q Consensus 147 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 226 (551)
.++++-++ ..++.+|. ..++++++|++++| .++.++...+ ..+++|++|+++++.. ..++
T Consensus 12 ~~~~~C~~-~~L~~lP~-~l~~~l~~L~Ls~N-~i~~l~~~~f-~~l~~L~~L~l~~n~~-~~i~--------------- 71 (305)
T d1xkua_ 12 LRVVQCSD-LGLEKVPK-DLPPDTALLDLQNN-KITEIKDGDF-KNLKNLHTLILINNKI-SKIS--------------- 71 (305)
T ss_dssp TTEEECTT-SCCCSCCC-SCCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSSCC-CCBC---------------
T ss_pred CCEEEecC-CCCCccCC-CCCCCCCEEECcCC-cCCCcChhHh-hccccccccccccccc-cccc---------------
Confidence 44554433 34666664 33567777777775 3555554211 2235556665555332 1221
Q ss_pred CCCcccccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhh
Q 008856 227 CDNIRTLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAER 306 (551)
Q Consensus 227 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~ 306 (551)
|..+.+ +++|++|+++++ .++. ++....+. ++.|.+..+.........
T Consensus 72 ---------~~~f~~--------l~~L~~L~l~~n-~l~~-l~~~~~~~-------------l~~L~~~~n~l~~l~~~~ 119 (305)
T d1xkua_ 72 ---------PGAFAP--------LVKLERLYLSKN-QLKE-LPEKMPKT-------------LQELRVHENEITKVRKSV 119 (305)
T ss_dssp ---------TTTTTT--------CTTCCEEECCSS-CCSB-CCSSCCTT-------------CCEEECCSSCCCBBCHHH
T ss_pred ---------hhhhhC--------CCccCEecccCC-ccCc-Cccchhhh-------------hhhhhccccchhhhhhhh
Confidence 222322 344555555552 3444 33333332 666666666544333444
Q ss_pred hcCCCCCcEEEEecCCCcc--cccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCc
Q 008856 307 LDNNTSLETISIYNCENLK--ILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLST 384 (551)
Q Consensus 307 ~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~ 384 (551)
+.....+..+....+.... ..+..+..+++|+.+++.+| .+..++... +++|+.|+++++......+..+.+++.
T Consensus 120 ~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~ 196 (305)
T d1xkua_ 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN 196 (305)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred hhccccccccccccccccccCCCccccccccccCccccccC-CccccCccc--CCccCEEECCCCcCCCCChhHhhcccc
Confidence 5566667777666532211 11345566788888888874 455565443 348888888886655555666777888
Q ss_pred ccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccc
Q 008856 385 LQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPL 453 (551)
Q Consensus 385 L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 453 (551)
++.|++++ .+..++.. ..+++|++|++++|. +..+ +.+ +..+++|++|++++|. +..++.
T Consensus 197 l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~l-p~~---l~~l~~L~~L~Ls~N~----i~~i~~ 259 (305)
T d1xkua_ 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKV-PGG---LADHKYIQVVYLHNNN----ISAIGS 259 (305)
T ss_dssp CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSC-CTT---TTTCSSCCEEECCSSC----CCCCCT
T ss_pred ccccccccccccccccccccccccceeeeccccc-cccc-ccc---cccccCCCEEECCCCc----cCccCh
Confidence 88888877 66666543 335677777777775 3322 222 5567777777777763 555554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.62 E-value=1e-15 Score=147.37 Aligned_cols=219 Identities=16% Similarity=0.099 Sum_probs=118.3
Q ss_pred ccEEEecc-CcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEE
Q 008856 289 LKSLRVRY-CSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 366 (551)
|++|++++ |.....+|..++++++|++|++++ +.+..+ +..+..+++|++++++++.....+|.....++.++.+++
T Consensus 78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~-N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l 156 (313)
T d1ogqa_ 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccccccccccccccccccchhhhcc-ccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence 44455443 222223444455555555555555 223322 333444555555555554433344433333445555555
Q ss_pred ccCccccccccccccCCcc-cceeccc-ccccccc-CCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccC
Q 008856 367 YDCKRLKALPKGLHNLSTL-QDLTIGG-ALLSLEE-DGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCD 443 (551)
Q Consensus 367 ~~c~~l~~~~~~~~~l~~L-~~L~l~~-~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 443 (551)
+++.....+|..+..+.++ +.++++. .+..... .........+++..+...... +.+ +..+++|+.+++++|.
T Consensus 157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~-~~~---~~~~~~l~~l~~~~~~ 232 (313)
T d1ogqa_ 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA-SVL---FGSDKNTQKIHLAKNS 232 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECC-GGG---CCTTSCCSEEECCSSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc---cccccccccccccccc
Confidence 5543333445545444443 4444444 3322211 111123335556555533322 222 4567788888888773
Q ss_pred CCCcccccccccccccccccccccccccccccCCChh-hhhhhccCCCCcCEEEEcCCCCcc-ccCCCCCccccceEeec
Q 008856 444 DDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLE-RLSSSIIDLRNLTELVLRGCPKLK-YFPEKGLPSSLLELWIS 521 (551)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~L~~L~i~ 521 (551)
+...+... ..+++|+.|++++ ++++ .+|.++.++++|++|++++ ++++ .+|..+.+++|+.+++.
T Consensus 233 ----l~~~~~~~-------~~~~~L~~L~Ls~-N~l~g~iP~~l~~L~~L~~L~Ls~-N~l~g~iP~~~~L~~L~~l~l~ 299 (313)
T d1ogqa_ 233 ----LAFDLGKV-------GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp ----ECCBGGGC-------CCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCS-SEEEEECCCSTTGGGSCGGGTC
T ss_pred ----cccccccc-------ccccccccccCcc-CeecccCChHHhCCCCCCEEECcC-CcccccCCCcccCCCCCHHHhC
Confidence 33222222 2567888888888 5666 6888888889999999998 4566 67775556788888888
Q ss_pred CCch
Q 008856 522 GCPL 525 (551)
Q Consensus 522 ~c~~ 525 (551)
+++.
T Consensus 300 ~N~~ 303 (313)
T d1ogqa_ 300 NNKC 303 (313)
T ss_dssp SSSE
T ss_pred CCcc
Confidence 7753
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.61 E-value=2.3e-15 Score=144.80 Aligned_cols=228 Identities=15% Similarity=0.113 Sum_probs=137.9
Q ss_pred cCCCCccEEEEecCCCcc-cccccccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEE
Q 008856 214 QLPSSLKMLTIWYCDNIR-TLTVEEGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 292 (551)
Q Consensus 214 ~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L 292 (551)
+.+++|++|++++++.+. .+ |..+.+ +++|++|+++++ ++.. .+...+ ..+ .+|+.+
T Consensus 73 ~~L~~L~~L~Ls~~N~l~g~i--P~~i~~--------L~~L~~L~Ls~N-~l~~-~~~~~~----~~~------~~L~~l 130 (313)
T d1ogqa_ 73 ANLPYLNFLYIGGINNLVGPI--PPAIAK--------LTQLHYLYITHT-NVSG-AIPDFL----SQI------KTLVTL 130 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCC--CGGGGG--------CTTCSEEEEEEE-CCEE-ECCGGG----GGC------TTCCEE
T ss_pred hcCcccccccccccccccccc--cccccc--------ccccchhhhccc-cccc-cccccc----cch------hhhccc
Confidence 445666666666655554 34 666666 667777777773 3332 111111 111 147888
Q ss_pred EeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCc-ceEEecCCCCCccC-CCCCCCCCCccEEEEccCc
Q 008856 293 RVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQL-REISIGSCGNLVSF-PGGGLPCAKLTALEIYDCK 370 (551)
Q Consensus 293 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L-~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~ 370 (551)
+++.|.....++..+..++.++.++++++.....+|..+..+..+ +.++++++ .+... +...... ....+++..+.
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l-~~~~l~l~~~~ 208 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANL-NLAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGC-CCSEEECCSSE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccc-ccccccccccccc-ccccccccccc
Confidence 888877666677777888888888888744333567767666665 66666663 44322 2222222 45567777766
Q ss_pred cccccccccccCCcccceeccc-ccc-ccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcc
Q 008856 371 RLKALPKGLHNLSTLQDLTIGG-ALL-SLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMM 448 (551)
Q Consensus 371 ~l~~~~~~~~~l~~L~~L~l~~-~l~-~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 448 (551)
....+|..+..+++++.+++.+ .+. .++..+.+++|++|++++|+... ..|.+ +..+++|++|++++|. +
T Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g-~iP~~---l~~L~~L~~L~Ls~N~----l 280 (313)
T d1ogqa_ 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-TLPQG---LTQLKFLHSLNVSFNN----L 280 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-CCCGG---GGGCTTCCEEECCSSE----E
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCccCeecc-cCChH---HhCCCCCCEEECcCCc----c
Confidence 5566677777778888888777 333 23444556788888888777432 23333 6677788888888773 5
Q ss_pred c-ccccccccccccccccccccccccccCCChhh
Q 008856 449 V-SFPLEDKRLGTVLRLPTTLTSLRIEDFPNLER 481 (551)
Q Consensus 449 ~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 481 (551)
. .+|... .+++|+.+++++.+.+..
T Consensus 281 ~g~iP~~~--------~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 281 CGEIPQGG--------NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCCST--------TGGGSCGGGTCSSSEEES
T ss_pred cccCCCcc--------cCCCCCHHHhCCCccccC
Confidence 4 455432 456777777777433443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.58 E-value=1.1e-13 Score=134.82 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=47.1
Q ss_pred cCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhh
Q 008856 402 LPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLER 481 (551)
Q Consensus 402 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 481 (551)
.+++|++|++++|.. ..+ -..+++|++|++++|. +..+|+ .+++|++|++++ +.++.
T Consensus 282 ~~~~L~~L~Ls~N~l-~~l-------p~~~~~L~~L~L~~N~----L~~l~~----------~~~~L~~L~L~~-N~L~~ 338 (353)
T d1jl5a_ 282 LPPSLEELNVSNNKL-IEL-------PALPPRLERLIASFNH----LAEVPE----------LPQNLKQLHVEY-NPLRE 338 (353)
T ss_dssp CCTTCCEEECCSSCC-SCC-------CCCCTTCCEEECCSSC----CSCCCC----------CCTTCCEEECCS-SCCSS
T ss_pred cCCCCCEEECCCCcc-Ccc-------ccccCCCCEEECCCCc----CCcccc----------ccCCCCEEECcC-CcCCC
Confidence 357888888888862 221 1245788888888873 677775 456888888888 46888
Q ss_pred hhhhccCCCCcCEEEEc
Q 008856 482 LSSSIIDLRNLTELVLR 498 (551)
Q Consensus 482 ~~~~~~~l~~L~~L~l~ 498 (551)
+|.. ...|++|.+.
T Consensus 339 lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 339 FPDI---PESVEDLRMN 352 (353)
T ss_dssp CCCC---CTTCCEEECC
T ss_pred CCcc---ccccCeeECc
Confidence 7743 2356666553
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.1e-14 Score=132.38 Aligned_cols=170 Identities=18% Similarity=0.130 Sum_probs=99.7
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
++++|++++|......+..|.++++|++|++++ +.++.++. +..+++|++|++++| .++..+.....+++|+.|+++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~-N~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~ 108 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCcCHHHhhcccccccccccc-cccccccc-ccccccccccccccc-ccccccccccccccccccccc
Confidence 588888888865444445677888888888888 56777643 456788888888884 566666655556678888887
Q ss_pred cCccccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDD 444 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 444 (551)
++......+..+..+.+++.|++++ .+..++.. ..+++|+.+++++|. +....+.. +..+++|++|++++|.
T Consensus 109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N~- 183 (266)
T d1p9ag_ 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGL---LNGLENLDTLLLQENS- 183 (266)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTT---TTTCTTCCEEECCSSC-
T ss_pred ccccceeeccccccccccccccccccccceeccccccccccchhccccccc-ccccCccc---cccccccceeecccCC-
Confidence 7543332334455666666666666 55555443 224555555555554 22222221 3445555555555552
Q ss_pred CCccccccccccccccccccccccccccccc
Q 008856 445 DTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
+..+|++. ..+++|+.|++++
T Consensus 184 ---L~~lp~~~-------~~~~~L~~L~L~~ 204 (266)
T d1p9ag_ 184 ---LYTIPKGF-------FGSHLLPFAFLHG 204 (266)
T ss_dssp ---CCCCCTTT-------TTTCCCSEEECCS
T ss_pred ---CcccChhH-------CCCCCCCEEEecC
Confidence 44554433 1234455555554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4e-14 Score=133.88 Aligned_cols=198 Identities=21% Similarity=0.200 Sum_probs=142.1
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCC-CCCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPG-GGLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 365 (551)
++++|++++|...+..+..+.++++|++|++++ +.+..+ +.....++.++++.+..++.+..++. ....+++|++|+
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~-n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECcCCcCCCCCHHHhhcccccccccccc-ccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 689999999865444445688899999999988 567666 44455678888888887777777755 344456899999
Q ss_pred EccCccccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 366 IYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 366 l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++++......+..+...++|+.+++++ .++.++.. ..+++|++|++++|. +....+.+ +.++++|+++++++|
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~---f~~l~~L~~l~l~~N 187 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERA---FRGLHSLDRLLLHQN 187 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS
T ss_pred cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhh---hccccccchhhhhhc
Confidence 988653332344566788888888888 77777654 346788889888887 33333333 677888999998888
Q ss_pred CCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 443 DDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
. +..++... +..+++|++|++++ +.+..++ ..+..+++|++|++++++
T Consensus 188 ~----l~~i~~~~------f~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 188 R----VAHVHPHA------FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp C----CCEECTTT------TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred c----ccccChhH------hhhhhhcccccccc-cccccccccccccccccCEEEecCCC
Confidence 3 44453322 24567888888888 6777765 567788888999888843
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.7e-14 Score=133.64 Aligned_cols=191 Identities=17% Similarity=0.189 Sum_probs=127.4
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCccccc-ccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEc
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIY 367 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 367 (551)
+.+++-+++. ++.+|..+. ++++.|++++ +.++.++ ..+..+++|++|++++| .++.++.. ..+++|++|+++
T Consensus 12 ~~~v~C~~~~-L~~iP~~lp--~~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~-~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 12 HLEVNCDKRN-LTALPPDLP--KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLS 85 (266)
T ss_dssp CCEEECTTSC-CSSCCSCCC--TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECC
T ss_pred CeEEEccCCC-CCeeCcCcC--cCCCEEECcC-CcCCCcCHHHhhccccccccccccc-cccccccc-cccccccccccc
Confidence 5556655543 444554332 5788999988 6777774 56778889999999885 66666653 345688888888
Q ss_pred cCccccccccccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCC
Q 008856 368 DCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDD 444 (551)
Q Consensus 368 ~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 444 (551)
++ +++..+..+.++++|+.|++++ .+..++.. ..++++++|++.+|... ...+.+ +..+++|+.+++++|.
T Consensus 86 ~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~---~~~l~~l~~l~l~~N~- 159 (266)
T d1p9ag_ 86 HN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGL---LTPTPKLEKLSLANNN- 159 (266)
T ss_dssp SS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTT---TTTCTTCCEEECTTSC-
T ss_pred cc-cccccccccccccccccccccccccceeeccccccccccccccccccccc-eecccc---ccccccchhccccccc-
Confidence 84 5777777778888888888877 55554443 34567777777777632 222222 4566777777777773
Q ss_pred CCcccccccccccccccccccccccccccccCCChhhhhhhccCCCCcCEEEEcCCC
Q 008856 445 DTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~ 501 (551)
+..++.+. +..+++|++|++++ |+++.+|.++..+++|+.|+++++|
T Consensus 160 ---l~~~~~~~------~~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 160 ---LTELPAGL------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp ---CSCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ---ccccCccc------cccccccceeeccc-CCCcccChhHCCCCCCCEEEecCCC
Confidence 55565432 23466777777777 6677777666667777777777644
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.45 E-value=1.7e-13 Score=124.93 Aligned_cols=185 Identities=18% Similarity=0.258 Sum_probs=106.7
Q ss_pred CCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCccccee
Q 008856 310 NTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLT 389 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~ 389 (551)
+.+|+.|++.+ +.++++ .++..+++|++|++++| .+..+.. ...+++++.+++++| .++.++ .+.++++|+.++
T Consensus 40 l~~L~~L~l~~-~~i~~l-~~l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~ 113 (227)
T d1h6ua2 40 LDGITTLSAFG-TGVTTI-EGVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (227)
T ss_dssp HHTCCEEECTT-SCCCCC-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEECCC-CCCCcc-hhHhcCCCCcEeecCCc-eeecccc-ccccccccccccccc-cccccc-cccccccccccc
Confidence 34555666655 334454 34555666666666663 3333322 122335666666653 233443 355666666666
Q ss_pred ccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccc
Q 008856 390 IGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTL 468 (551)
Q Consensus 390 l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 468 (551)
+++ ....++.....+.++.+.++++...... . +...++|++|++++|. +...+.- ..+++|
T Consensus 114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~----~~~~~~L~~L~l~~n~----~~~~~~l--------~~l~~L 175 (227)
T d1h6ua2 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--P----LAGLTNLQYLSIGNAQ----VSDLTPL--------ANLSKL 175 (227)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G----GGGCTTCCEEECCSSC----CCCCGGG--------TTCTTC
T ss_pred cccccccccchhccccchhhhhchhhhhchhh--h----hccccccccccccccc----cccchhh--------cccccc
Confidence 666 4444444444567777777666533211 1 4566778888887773 3333321 245678
Q ss_pred cccccccCCChhhhhhhccCCCCcCEEEEcCCCCccccCCCCCccccceEeec
Q 008856 469 TSLRIEDFPNLERLSSSIIDLRNLTELVLRGCPKLKYFPEKGLPSSLLELWIS 521 (551)
Q Consensus 469 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~ 521 (551)
++|++++ +++++++ .+.++++|++|++++| +++.++.-+.+++|++|+++
T Consensus 176 ~~L~Ls~-n~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 176 TTLKADD-NKISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT 225 (227)
T ss_dssp CEEECCS-SCCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred eecccCC-CccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence 8888877 4777765 3667788888888885 57777654456778877775
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.9e-13 Score=126.23 Aligned_cols=171 Identities=23% Similarity=0.294 Sum_probs=78.3
Q ss_pred ccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCC-CCCCCCCCccEEEE
Q 008856 289 LKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFP-GGGLPCAKLTALEI 366 (551)
Q Consensus 289 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l 366 (551)
|++|+++++.........+..+..+..+.+...+.+..+ +..+..+++|++|+++++.. ..++ ......++|+.+++
T Consensus 58 L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l 136 (284)
T d1ozna_ 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYL 136 (284)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCccc-ccccccccchhcccchhhh
Confidence 444444444333333333444455555544444444444 33444455555555555322 2222 22222335555555
Q ss_pred ccCccccccc-cccccCCcccceeccc-cccccccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 367 YDCKRLKALP-KGLHNLSTLQDLTIGG-ALLSLEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 367 ~~c~~l~~~~-~~~~~l~~L~~L~l~~-~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++ +.++.++ ..+..+++|+.|++++ .++.++.. ..+++|+++++++|.... ..+.+ +..+++|++|++++|
T Consensus 137 ~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~-i~~~~---f~~l~~L~~L~l~~N 211 (284)
T d1ozna_ 137 QD-NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHA---FRDLGRLMTLYLFAN 211 (284)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTT---TTTCTTCCEEECCSS
T ss_pred cc-ccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc-cChhH---hhhhhhccccccccc
Confidence 54 3344443 2344555555555555 44444432 224555555555555222 22222 455556666666655
Q ss_pred CCCCccccccccccccccccccccccccccccc
Q 008856 443 DDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIED 475 (551)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 475 (551)
. +..++... +...++|+.|++++
T Consensus 212 ~----i~~~~~~~------~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 212 N----LSALPTEA------LAPLRALQYLRLND 234 (284)
T ss_dssp C----CSCCCHHH------HTTCTTCCEEECCS
T ss_pred c----cccccccc------cccccccCEEEecC
Confidence 2 44444322 22345566666555
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.4e-13 Score=129.75 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=38.5
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccc--
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVK-- 136 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~-- 136 (551)
..+|++|++++|..-... ....+..+++|++|++++|. +++... .++... ++|++|++++|+.++.
T Consensus 45 ~~~L~~LdLs~~~i~~~~---l~~l~~~c~~L~~L~L~~~~-l~~~~~----~~l~~~----~~L~~L~Ls~c~~itd~~ 112 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLR-LSDPIV----NTLAKN----SNLVRLNLSGCSGFSEFA 112 (284)
T ss_dssp CBCCCEEECTTCEECHHH---HHHHHTTBCCCSEEECTTCB-CCHHHH----HHHTTC----TTCSEEECTTCBSCCHHH
T ss_pred CCCCCEEECCCCccCHHH---HHHHHHhCCCcccccccccC-CCcHHH----HHHhcC----CCCcCccccccccccccc
Confidence 345666666654321111 12234455666666666553 322111 112222 5566666655544431
Q ss_pred cccccCCCCCCceEEEccCCCC
Q 008856 137 LPQSSFSLSSLREIEIFKCSSL 158 (551)
Q Consensus 137 ~~~~~~~l~~L~~L~l~~c~~l 158 (551)
+...+..+++|++|++++|..+
T Consensus 113 l~~l~~~~~~L~~L~ls~c~~~ 134 (284)
T d2astb2 113 LQTLLSSCSRLDELNLSWCFDF 134 (284)
T ss_dssp HHHHHHHCTTCCEEECCCCTTC
T ss_pred cchhhHHHHhcccccccccccc
Confidence 1112233455555555555443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.2e-13 Score=130.28 Aligned_cols=211 Identities=15% Similarity=0.188 Sum_probs=134.8
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccCCCCCCceEEEccCCCCcccC--
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFP-- 162 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~-- 162 (551)
....+|++|++++|. ++. ..+..+...+++|++|++++|..-...+..+..+++|++|++++|..++...
T Consensus 43 ~~~~~L~~LdLs~~~-i~~-------~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~ 114 (284)
T d2astb2 43 FSPFRVQHMDLSNSV-IEV-------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114 (284)
T ss_dssp CCCBCCCEEECTTCE-ECH-------HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH
T ss_pred ccCCCCCEEECCCCc-cCH-------HHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccc
Confidence 345689999999864 432 2233444455899999999885433455567778899999999988776432
Q ss_pred C-CCCCCCCcEEEccCCCCccccchhh-hhccCCCccEEEEecCC-Ccceeccc---cCCCCccEEEEecCCCccccccc
Q 008856 163 E-VALPSKLKKIQIGECDALKSLPEAW-MCDTNSSLEILSIHGCR-SLTYIAAV---QLPSSLKMLTIWYCDNIRTLTVE 236 (551)
Q Consensus 163 ~-~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~ 236 (551)
. +..+++|++|++++|..+.+..... .....+.|+.|++++|. .+++.... ..+++|++|++++|..++.-. .
T Consensus 115 ~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-~ 193 (284)
T d2astb2 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-F 193 (284)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-G
T ss_pred hhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh-h
Confidence 2 3457899999999988776533221 11223679999998863 33332221 345789999999888776431 2
Q ss_pred ccccccCCCcccccCCccEEEEecCCCCcccccCCCchhhhhhccccCCCCCccEEEeccCcchhhhHhhhcCCCCCcEE
Q 008856 237 EGIQCSSSSRRYTSYLLEHLGIRYCPSLTCIFSKNELPATLESLEVGNLPPSLKSLRVRYCSKLESIAERLDNNTSLETI 316 (551)
Q Consensus 237 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 316 (551)
..+.. +++|++|++++|..+++ .....+. +. ++|++|++++|-....+......+|+|+
T Consensus 194 ~~l~~--------~~~L~~L~L~~C~~i~~-~~l~~L~---------~~-~~L~~L~l~~~~~d~~l~~l~~~lp~L~-- 252 (284)
T d2astb2 194 QEFFQ--------LNYLQHLSLSRCYDIIP-ETLLELG---------EI-PTLKTLQVFGIVPDGTLQLLKEALPHLQ-- 252 (284)
T ss_dssp GGGGG--------CTTCCEEECTTCTTCCG-GGGGGGG---------GC-TTCCEEECTTSSCTTCHHHHHHHSTTSE--
T ss_pred hhhcc--------cCcCCEEECCCCCCCCh-HHHHHHh---------cC-CCCCEEeeeCCCCHHHHHHHHHhCcccc--
Confidence 33333 67899999999988765 3222211 11 2599999998843333444445667765
Q ss_pred EEecCCCcccc
Q 008856 317 SIYNCENLKIL 327 (551)
Q Consensus 317 ~l~~~~~l~~~ 327 (551)
+ +|..+..+
T Consensus 253 -i-~~~~ls~~ 261 (284)
T d2astb2 253 -I-NCSHFTTI 261 (284)
T ss_dssp -E-SCCCSCCT
T ss_pred -c-cCccCCCC
Confidence 3 34556554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.38 E-value=3.3e-12 Score=116.12 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=24.3
Q ss_pred CCccEEecccCccccccccccCCCCCCceEEEccCCCCcccCCCCCCCCCcEEEccC
Q 008856 121 CRLEYLILSYCEGLVKLPQSSFSLSSLREIEIFKCSSLVSFPEVALPSKLKKIQIGE 177 (551)
Q Consensus 121 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 177 (551)
.+|+.|++.+| .++.++ ++..+++|++|+++++ .++.+.++..+++|+++++++
T Consensus 41 ~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~l~~l~~l~~l~~~~ 94 (227)
T d1h6ua2 41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSG 94 (227)
T ss_dssp HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCS
T ss_pred CCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCc-eeecccccccccccccccccc
Confidence 44455555443 233332 3444455555555442 333443344445555555544
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.37 E-value=1.2e-12 Score=117.44 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=87.1
Q ss_pred CCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceec
Q 008856 311 TSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTI 390 (551)
Q Consensus 311 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l 390 (551)
.+|+.|++++ +.++.++ ++..+++|++|++++| .++.++.. ..+++|+.|++++| +++.++ .+..+++|+.|++
T Consensus 46 ~~L~~L~l~~-~~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~~-~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l 119 (210)
T d1h6ta2 46 NSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPL-ANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL 119 (210)
T ss_dssp HTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGG-TTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred cCccEEECcC-CCCCCch-hHhhCCCCCEEeCCCc-cccCcccc-ccCccccccccccc-cccccc-ccccccccccccc
Confidence 3555666655 3344442 3555666666666663 44444432 22346666666653 355554 3555666666666
Q ss_pred cc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEeccCCCCccccccccccccccccccccccc
Q 008856 391 GG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLT 469 (551)
Q Consensus 391 ~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 469 (551)
++ ....++....+++++.+++++|.... .. . +..+++|+++++++|. +..++.-. .+++|+
T Consensus 120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~-~~-~----~~~l~~L~~l~l~~n~----l~~i~~l~--------~l~~L~ 181 (210)
T d1h6ta2 120 EHNGISDINGLVHLPQLESLYLGNNKITD-IT-V----LSRLTKLDTLSLEDNQ----ISDIVPLA--------GLTKLQ 181 (210)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCC-CG-G----GGGCTTCSEEECCSSC----CCCCGGGT--------TCTTCC
T ss_pred ccccccccccccccccccccccccccccc-cc-c----cccccccccccccccc----cccccccc--------CCCCCC
Confidence 55 44444444445566666666665322 11 1 3456667777766662 44443311 445666
Q ss_pred ccccccCCChhhhhhhccCCCCcCEEEEc
Q 008856 470 SLRIEDFPNLERLSSSIIDLRNLTELVLR 498 (551)
Q Consensus 470 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 498 (551)
+|++++ +.+++++ .+.++++|++|+++
T Consensus 182 ~L~Ls~-N~i~~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 182 NLYLSK-NHISDLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp EEECCS-SCCCBCG-GGTTCTTCSEEEEE
T ss_pred EEECCC-CCCCCCh-hhcCCCCCCEEEcc
Confidence 666666 4566665 45666666666665
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.32 E-value=2.7e-12 Score=115.09 Aligned_cols=165 Identities=18% Similarity=0.160 Sum_probs=128.8
Q ss_pred CCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeEe
Q 008856 333 KLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLVI 411 (551)
Q Consensus 333 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l 411 (551)
.+.+|++|++++| .++.++. ...+++|++|++++| +++.++. +..+++|+.|++++ .++.++....+++|+.|++
T Consensus 44 ~L~~L~~L~l~~~-~i~~l~~-l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l 119 (210)
T d1h6ta2 44 ELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (210)
T ss_dssp HHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred HhcCccEEECcCC-CCCCchh-HhhCCCCCEEeCCCc-cccCccc-cccCcccccccccccccccccccccccccccccc
Confidence 4678999999995 5556654 234669999999995 5777764 68899999999998 8888887777899999999
Q ss_pred cCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCCC
Q 008856 412 RGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLRN 491 (551)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 491 (551)
++|.... . +. +..+++++.+++++|. +...+... .+++|+.+++++ +.+..++ .+.++++
T Consensus 120 ~~~~~~~-~-~~----l~~l~~l~~l~~~~n~----l~~~~~~~--------~l~~L~~l~l~~-n~l~~i~-~l~~l~~ 179 (210)
T d1h6ta2 120 EHNGISD-I-NG----LVHLPQLESLYLGNNK----ITDITVLS--------RLTKLDTLSLED-NQISDIV-PLAGLTK 179 (210)
T ss_dssp TTSCCCC-C-GG----GGGCTTCCEEECCSSC----CCCCGGGG--------GCTTCSEEECCS-SCCCCCG-GGTTCTT
T ss_pred ccccccc-c-cc----cccccccccccccccc----cccccccc--------cccccccccccc-ccccccc-cccCCCC
Confidence 9988433 1 11 6688999999999883 55554433 568999999999 6888876 4788999
Q ss_pred cCEEEEcCCCCccccCCCCCccccceEeecC
Q 008856 492 LTELVLRGCPKLKYFPEKGLPSSLLELWISG 522 (551)
Q Consensus 492 L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 522 (551)
|++|++++| +++.++.-.-+++|++|++++
T Consensus 180 L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 180 LQNLYLSKN-HISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp CCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred CCEEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence 999999995 688886544468999999863
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.32 E-value=3.4e-12 Score=113.38 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=45.1
Q ss_pred CCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCccccee
Q 008856 310 NTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLT 389 (551)
Q Consensus 310 l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~ 389 (551)
++++++|++++ +.+.++ .++..+++|++|++++| .++.++. ...+++|+.|++++|. +..++ .+.++++|+.|+
T Consensus 39 l~~l~~L~l~~-~~i~~l-~~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~ 112 (199)
T d2omxa2 39 LDQVTTLQADR-LGIKSI-DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLT 112 (199)
T ss_dssp HTTCCEEECTT-SCCCCC-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred hcCCCEEECCC-CCCCCc-cccccCCCcCcCccccc-cccCccc-ccCCcccccccccccc-ccccc-cccccccccccc
Confidence 34556666665 334444 23455566666666663 3443332 2223355555555432 23332 244444555554
Q ss_pred ccc-cccccccCCcCCCcceeEecCCc
Q 008856 390 IGG-ALLSLEEDGLPTNLHSLVIRGNM 415 (551)
Q Consensus 390 l~~-~l~~l~~~~~~~~L~~L~l~~~~ 415 (551)
+++ ....++....+++|+.|++++|.
T Consensus 113 l~~~~~~~~~~~~~l~~L~~L~l~~n~ 139 (199)
T d2omxa2 113 LFNNQITDIDPLKNLTNLNRLELSSNT 139 (199)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred ccccccccccccchhhhhHHhhhhhhh
Confidence 444 22222222333444444444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.30 E-value=4e-12 Score=112.95 Aligned_cols=162 Identities=18% Similarity=0.217 Sum_probs=122.3
Q ss_pred cCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-cccccccCCcCCCcceeE
Q 008856 332 HKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEEDGLPTNLHSLV 410 (551)
Q Consensus 332 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~~~~~~~L~~L~ 410 (551)
..++++++|+++++ .+.++.. ...+++|++|++++| .++.++. +.++++|+.|++++ .+..++....+++|+.|+
T Consensus 37 ~~l~~l~~L~l~~~-~i~~l~~-l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~ 112 (199)
T d2omxa2 37 TDLDQVTTLQADRL-GIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 112 (199)
T ss_dssp HHHTTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred HHhcCCCEEECCCC-CCCCccc-cccCCCcCcCccccc-cccCccc-ccCCccccccccccccccccccccccccccccc
Confidence 45688999999995 5666643 234569999999995 6777764 88999999999998 777777667789999999
Q ss_pred ecCCchhhhhhhhhccccccCCCccEEEEeccCCCCcccccccccccccccccccccccccccccCCChhhhhhhccCCC
Q 008856 411 IRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLSSSIIDLR 490 (551)
Q Consensus 411 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 490 (551)
+++|...... . +..+++|+.|++++|. +..++.-. ..++|++|++.+ +.++.++ .+.+++
T Consensus 113 l~~~~~~~~~--~----~~~l~~L~~L~l~~n~----l~~~~~l~--------~~~~L~~L~l~~-n~l~~l~-~l~~l~ 172 (199)
T d2omxa2 113 LFNNQITDID--P----LKNLTNLNRLELSSNT----ISDISALS--------GLTSLQQLNFSS-NQVTDLK-PLANLT 172 (199)
T ss_dssp CCSSCCCCCG--G----GTTCTTCSEEECCSSC----CCCCGGGT--------TCTTCSEEECCS-SCCCCCG-GGTTCT
T ss_pred cccccccccc--c----cchhhhhHHhhhhhhh----hccccccc--------cccccccccccc-ccccCCc-cccCCC
Confidence 9988854321 1 6678999999999983 55555322 567999999998 6788876 477899
Q ss_pred CcCEEEEcCCCCccccCCCCCccccceE
Q 008856 491 NLTELVLRGCPKLKYFPEKGLPSSLLEL 518 (551)
Q Consensus 491 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L 518 (551)
+|++|++++| +++.++.-..+++|++|
T Consensus 173 ~L~~L~ls~N-~i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 173 TLERLDISSN-KVSDISVLAKLTNLESL 199 (199)
T ss_dssp TCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred CCCEEECCCC-CCCCCccccCCCCCCcC
Confidence 9999999996 58777543334566654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=2.4e-11 Score=111.48 Aligned_cols=81 Identities=21% Similarity=0.173 Sum_probs=38.9
Q ss_pred CccEEEeccCcchhhhHhhhcCCCCCcEEEEecCCCcccc-cccccCCCCcceEEecCCCCCccCCCC-CCCCCCccEEE
Q 008856 288 SLKSLRVRYCSKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREISIGSCGNLVSFPGG-GLPCAKLTALE 365 (551)
Q Consensus 288 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 365 (551)
++++|++++|.........|.++++|++|+++++.....+ +..+..+++++++.+..++.+..++.. ...+++|++++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 3556666555432222234555666666666663333333 223445556666655554444443332 22334555555
Q ss_pred Ecc
Q 008856 366 IYD 368 (551)
Q Consensus 366 l~~ 368 (551)
+.+
T Consensus 110 l~~ 112 (242)
T d1xwdc1 110 ISN 112 (242)
T ss_dssp EES
T ss_pred cch
Confidence 555
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.7e-10 Score=105.54 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=59.2
Q ss_pred cEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc-ccCCCCCCceEEEccCCCCcccCC--CCCC
Q 008856 91 KRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ-SSFSLSSLREIEIFKCSSLVSFPE--VALP 167 (551)
Q Consensus 91 ~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~--~~~~ 167 (551)
+.++.++ .+++++|+. .++++++|+++++ .++.++. .+.++++|++|+++++.....++. +..+
T Consensus 11 ~~i~c~~-~~l~~iP~~-----------l~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l 77 (242)
T d1xwdc1 11 RVFLCQE-SKVTEIPSD-----------LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 77 (242)
T ss_dssp SEEEEES-CSCSSCCSC-----------SCSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESC
T ss_pred CEEEEeC-CCCCCcCCC-----------CCCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccc
Confidence 6677776 357777654 2257888888874 4566664 367788888888877654444443 3446
Q ss_pred CCCcEEEccCCCCccccchhhhhccCCCccEEEEec
Q 008856 168 SKLKKIQIGECDALKSLPEAWMCDTNSSLEILSIHG 203 (551)
Q Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 203 (551)
++++++.+.++..+...+...+ .+.++|+++++.+
T Consensus 78 ~~l~~l~~~~~n~l~~~~~~~~-~~l~~L~~l~l~~ 112 (242)
T d1xwdc1 78 PKLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISN 112 (242)
T ss_dssp TTCCEEEEECCTTCCEECTTSE-ECCTTCCEEEEES
T ss_pred cccccccccccccccccccccc-cccccccccccch
Confidence 6677776665555544443311 2235555555555
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.1e-12 Score=132.45 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=63.6
Q ss_pred CCcceEEeCCCCCcc-----ccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhh-cccCcchhc
Q 008856 12 PALCKMEIGGCKKVV-----WRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCI-WKSHNELLQ 85 (551)
Q Consensus 12 ~~L~~L~l~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~ 85 (551)
++|++|++++++... +.+.+.+++.|++.+|.........-+.....+++|++|++++ +.+.+. |......+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~-N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTTC
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcC-CcCChHHHHHHHHHHh
Confidence 368889998776533 3444777888888888644322211111123467788888877 355432 000011111
Q ss_pred -ccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCc
Q 008856 86 -DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCE 132 (551)
Q Consensus 86 -~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 132 (551)
..++|++|++++|. +++.....++..+... ++|++|++++|.
T Consensus 81 ~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~----~~L~~L~L~~N~ 123 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTL----PTLQELHLSDNL 123 (460)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSC----TTCCEEECCSSB
T ss_pred cCCCCCCEEECCCCC-ccccccccccchhhcc----cccccccccccc
Confidence 23468888888764 6554333322333333 778888887753
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.6e-12 Score=128.57 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=66.8
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc----
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV---- 135 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~---- 135 (551)
++|++|++++ +++.+. +....+..++++++|+|.+|. ++......++.++... ++|++|+|++|. +.
T Consensus 2 ~~l~~ld~~~-~~i~~~--~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~----~~L~~LdLs~N~-i~~~~~ 72 (460)
T d1z7xw1 2 LDIQSLDIQC-EELSDA--RWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVN----PALAELNLRSNE-LGDVGV 72 (460)
T ss_dssp EEEEEEEEES-CCCCHH--HHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTC----TTCCEEECTTCC-CHHHHH
T ss_pred CCCCEEEeeC-CcCChH--HHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcC----CCCCEEECcCCc-CChHHH
Confidence 4678888876 566543 123445678888888888874 6543332222333433 888888888763 32
Q ss_pred -ccccccC-CCCCCceEEEccCCCCccc-----CC-CCCCCCCcEEEccCCC
Q 008856 136 -KLPQSSF-SLSSLREIEIFKCSSLVSF-----PE-VALPSKLKKIQIGECD 179 (551)
Q Consensus 136 -~~~~~~~-~l~~L~~L~l~~c~~l~~~-----~~-~~~~~~L~~L~l~~~~ 179 (551)
.+...+. ...+|++|++++| .++.. +. +..+++|++|++++|.
T Consensus 73 ~~l~~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~ 123 (460)
T d1z7xw1 73 HCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL 123 (460)
T ss_dssp HHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence 1222322 2346888888886 35432 22 4557888888888765
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=5.7e-10 Score=94.81 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=6.1
Q ss_pred cCCCCcCEEEEcC
Q 008856 487 IDLRNLTELVLRG 499 (551)
Q Consensus 487 ~~l~~L~~L~l~~ 499 (551)
..+++|+++++++
T Consensus 109 ~~l~~L~~L~l~~ 121 (162)
T d1a9na_ 109 ASLKSLTYLCILR 121 (162)
T ss_dssp GGCTTCCEEECCS
T ss_pred ccccccchhhcCC
Confidence 3444444444444
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=9e-10 Score=88.88 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=33.2
Q ss_pred ccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccccccCCcccceeccc-ccccccc---CCcCCCc
Q 008856 331 LHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEE---DGLPTNL 406 (551)
Q Consensus 331 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~---~~~~~~L 406 (551)
+..+++|++|++++ +.++.+|.....+++|+.|++++ +.++.++ .+.++++|+.|++++ .+..++. ...+++|
T Consensus 16 l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L 92 (124)
T d1dcea3 16 LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 92 (124)
T ss_dssp GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred cccCCCCCEEECCC-CccCcchhhhhhhhccccccccc-ccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence 33444444444444 23333333222233444444444 2333332 234444444444444 3333322 1234455
Q ss_pred ceeEecCCc
Q 008856 407 HSLVIRGNM 415 (551)
Q Consensus 407 ~~L~l~~~~ 415 (551)
++|++++|+
T Consensus 93 ~~L~l~~N~ 101 (124)
T d1dcea3 93 VLLNLQGNS 101 (124)
T ss_dssp CEEECTTSG
T ss_pred CEEECCCCc
Confidence 555555555
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=2.8e-09 Score=85.91 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=68.0
Q ss_pred cEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccccccC
Q 008856 63 EELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQSSF 142 (551)
Q Consensus 63 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~ 142 (551)
|.|++++ ++++.+ + .+..+++|++|+++++ .++.+|+. +..+ ++|++|++++| .++.++ ++.
T Consensus 1 R~L~Ls~-n~l~~l---~--~l~~l~~L~~L~ls~N-~l~~lp~~-----~~~l----~~L~~L~l~~N-~i~~l~-~~~ 62 (124)
T d1dcea3 1 RVLHLAH-KDLTVL---C--HLEQLLLVTHLDLSHN-RLRALPPA-----LAAL----RCLEVLQASDN-ALENVD-GVA 62 (124)
T ss_dssp SEEECTT-SCCSSC---C--CGGGGTTCCEEECCSS-CCCCCCGG-----GGGC----TTCCEEECCSS-CCCCCG-GGT
T ss_pred CEEEcCC-CCCCCC---c--ccccCCCCCEEECCCC-ccCcchhh-----hhhh----hcccccccccc-cccccC-ccc
Confidence 5678888 566665 3 3677888888888874 57777653 5555 78888888874 556665 477
Q ss_pred CCCCCceEEEccCCCCcccCC---CCCCCCCcEEEccCCC
Q 008856 143 SLSSLREIEIFKCSSLVSFPE---VALPSKLKKIQIGECD 179 (551)
Q Consensus 143 ~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~ 179 (551)
.+++|++|++++ +.++.++. +..+++|++|++++|.
T Consensus 63 ~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 63 NLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp TCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred cccccCeEECCC-CccCCCCCchhhcCCCCCCEEECCCCc
Confidence 788888888877 35555543 4557777777777754
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=9.7e-10 Score=93.33 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=50.0
Q ss_pred CCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEEccCccccccccc-cccCCcccc
Q 008856 309 NNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEIYDCKRLKALPKG-LHNLSTLQD 387 (551)
Q Consensus 309 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~l~~L~~ 387 (551)
++.++++|++++ ++++.++.....+++|++|++++| .++.++. ...+++|++|++++| .++.++.. +..+++|+.
T Consensus 16 n~~~lr~L~L~~-n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~-~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 16 NAVRDRELDLRG-YKIPVIENLGATLDQFDAIDFSDN-EIRKLDG-FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 91 (162)
T ss_dssp CTTSCEEEECTT-SCCCSCCCGGGGTTCCSEEECCSS-CCCEECC-CCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CcCcCcEEECCC-CCCCccCccccccccCCEEECCCC-CCCccCC-cccCcchhhhhcccc-cccCCCcccccccccccc
Confidence 344555555555 445555433344555566666553 4444432 223345555555553 34444433 234555555
Q ss_pred eeccc-ccccccc---CCcCCCcceeEecCCc
Q 008856 388 LTIGG-ALLSLEE---DGLPTNLHSLVIRGNM 415 (551)
Q Consensus 388 L~l~~-~l~~l~~---~~~~~~L~~L~l~~~~ 415 (551)
|++++ .+..++. ...+++|++|++++|+
T Consensus 92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~ 123 (162)
T d1a9na_ 92 LILTNNSLVELGDLDPLASLKSLTYLCILRNP 123 (162)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred ceeccccccccccccccccccccchhhcCCCc
Confidence 55555 3333322 2334566666666665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.87 E-value=1.6e-09 Score=95.12 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=73.5
Q ss_pred ccEEEEccCccccccccccccCCcccceeccc-cccc-cccC--CcCCCcceeEecCCchhhhhhhhhccccccCCCccE
Q 008856 361 LTALEIYDCKRLKALPKGLHNLSTLQDLTIGG-ALLS-LEED--GLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRH 436 (551)
Q Consensus 361 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~-l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 436 (551)
.++++.++ ++++++|..+. +++++|++++ .+.. ++.. ..+++|++|++++|.... ..+.. +..+++|++
T Consensus 10 ~~~v~Cs~-~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~-~~~~~---~~~~~~L~~ 82 (192)
T d1w8aa_ 10 GTTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNA---FEGASHIQE 82 (192)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTTT---TTTCTTCCE
T ss_pred CCEEEEeC-CCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc-ccccc---cccccccce
Confidence 44566655 56777776553 4677777777 5543 3222 235677777777766433 22222 556677777
Q ss_pred EEEeccCCCCcccccccccccccccccccccccccccccCCChhhhh-hhccCCCCcCEEEEcCCC
Q 008856 437 LTIDGCDDDTMMVSFPLEDKRLGTVLRLPTTLTSLRIEDFPNLERLS-SSIIDLRNLTELVLRGCP 501 (551)
Q Consensus 437 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~ 501 (551)
|++++|. +..++... |..+++|++|++++ +.++.++ ..+..+++|+++++++++
T Consensus 83 L~Ls~N~----l~~l~~~~------F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 83 LQLGENK----IKEISNKM------FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp EECCSCC----CCEECSSS------STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred eeecccc----ccccCHHH------HhCCCcccccccCC-ccccccCHHHhcCCcccccccccccc
Confidence 7777763 56665533 34566777777777 6676665 345666777777777643
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.80 E-value=1.4e-08 Score=88.82 Aligned_cols=105 Identities=11% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCccEEEecCCCCchh-hcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 60 PKLEELKINNIQNETC-IWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
+++++|++++ +.++. + +...|..+++|+.|+++++ .+..+++. .+..+ ++|++|++++| .+..++
T Consensus 29 ~~l~~L~Ls~-N~i~~~~---~~~~f~~l~~L~~L~L~~N-~i~~~~~~----~~~~~----~~L~~L~Ls~N-~l~~l~ 94 (192)
T d1w8aa_ 29 LHTTELLLND-NELGRIS---SDGLFGRLPHLVKLELKRN-QLTGIEPN----AFEGA----SHIQELQLGEN-KIKEIS 94 (192)
T ss_dssp TTCSEEECCS-CCCCSBC---CSCSGGGCTTCCEEECCSS-CCCCBCTT----TTTTC----TTCCEEECCSC-CCCEEC
T ss_pred CCCCEEEeCC-CCCcccc---cccccCCCceEeeeecccc-cccccccc----ccccc----cccceeeeccc-cccccC
Confidence 4677777777 45542 3 4455566777777777764 36555543 24444 67777777774 445544
Q ss_pred -cccCCCCCCceEEEccCCCCcccCC--CCCCCCCcEEEccCCC
Q 008856 139 -QSSFSLSSLREIEIFKCSSLVSFPE--VALPSKLKKIQIGECD 179 (551)
Q Consensus 139 -~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 179 (551)
..+.++++|++|+|++ +.++.+++ +..+++|++++++++.
T Consensus 95 ~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 95 NKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred HHHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccccc
Confidence 3456677777777776 45666655 4456677777776654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.67 E-value=4.7e-10 Score=98.84 Aligned_cols=57 Identities=25% Similarity=0.206 Sum_probs=24.8
Q ss_pred Ccccceeccc-cccccccCCcCCCcceeEecCCchhhhhhhhhccccccCCCccEEEEecc
Q 008856 383 STLQDLTIGG-ALLSLEEDGLPTNLHSLVIRGNMEIWKSMIEWGRGFHRFSSLRHLTIDGC 442 (551)
Q Consensus 383 ~~L~~L~l~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 442 (551)
++|+.|++++ .+..++....+++|++|++++|.........+ +..+++|+.|++++|
T Consensus 93 ~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~---l~~l~~L~~L~L~~N 150 (198)
T d1m9la_ 93 DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK---LAALDKLEDLLLAGN 150 (198)
T ss_dssp HHCCEEECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHH---HTTTTTCSEEEECSS
T ss_pred ccccccccccccccccccccccccccccccccchhcccccccc---ccCCCccceeecCCC
Confidence 3444444444 33333332334455555555554221111111 445566666666655
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.67 E-value=2.8e-10 Score=100.34 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=103.5
Q ss_pred CccEEEeccC-cchhhhHhhhcCCCCCcEEEEecCCCcccccccccCCCCcceEEecCCCCCccCCCCCCCCCCccEEEE
Q 008856 288 SLKSLRVRYC-SKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREISIGSCGNLVSFPGGGLPCAKLTALEI 366 (551)
Q Consensus 288 ~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 366 (551)
.++.+++.+. +.++.++..+..+++|++|++++ +.++.++ .+..+++|++|++++| .++.++.....+++|+.|++
T Consensus 24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~-n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l 100 (198)
T d1m9la_ 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSE-EEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEEC
T ss_pred ccceeeeecccCchhhhhhHHhcccccceeECcc-cCCCCcc-cccCCccccChhhccc-cccccccccccccccccccc
Confidence 3556666543 23455566778889999999998 6687774 5778899999999985 56677653333457999999
Q ss_pred ccCccccccccccccCCcccceeccc-ccccccc---CCcCCCcceeEecCCchhhhhhhhh------ccccccCCCccE
Q 008856 367 YDCKRLKALPKGLHNLSTLQDLTIGG-ALLSLEE---DGLPTNLHSLVIRGNMEIWKSMIEW------GRGFHRFSSLRH 436 (551)
Q Consensus 367 ~~c~~l~~~~~~~~~l~~L~~L~l~~-~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~~l~~L~~ 436 (551)
+++ .++.++ .+.++++|+.|++++ .+..++. ...+++|++|++++|+......... ...+..+|+|+.
T Consensus 101 ~~N-~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~ 178 (198)
T d1m9la_ 101 SYN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp SEE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCE
T ss_pred ccc-cccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCE
Confidence 984 677764 478899999999998 6666543 3568999999999998543221110 011456788888
Q ss_pred EE
Q 008856 437 LT 438 (551)
Q Consensus 437 L~ 438 (551)
||
T Consensus 179 LD 180 (198)
T d1m9la_ 179 LD 180 (198)
T ss_dssp ES
T ss_pred eC
Confidence 76
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.61 E-value=2.2e-08 Score=96.33 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=17.0
Q ss_pred ccEEEeccCcchh----hhHhhhcCCCCCcEEEEecC
Q 008856 289 LKSLRVRYCSKLE----SIAERLDNNTSLETISIYNC 321 (551)
Q Consensus 289 L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~ 321 (551)
|+.|++++|.... .+...+..+++|++|++++|
T Consensus 217 L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n 253 (344)
T d2ca6a1 217 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 253 (344)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred hcccccccccccccccccccccccccccchhhhhhcC
Confidence 5555555554322 23334455566666666664
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.42 E-value=8.5e-08 Score=92.14 Aligned_cols=246 Identities=13% Similarity=0.075 Sum_probs=147.2
Q ss_pred hhhhhccCCCCcceEEeCCCCCcc-----c---cccccccceeeeccccCcccceecc------CCcCCCCCCccEEEec
Q 008856 3 RIVISITSLPALCKMEIGGCKKVV-----W---RSATDHLGSQNSVVCRDASNQVFLA------GPLKPRIPKLEELKIN 68 (551)
Q Consensus 3 ~~~~~~~~~~~L~~L~l~~~~~~~-----~---~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~~L~~L~l~ 68 (551)
.+..++.....|++|++++|..-. + ....++|+.+++.++.........+ ......+++|++|+++
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 456678889999999999985422 2 2336778999998775432110100 1112457899999999
Q ss_pred CCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhh-----hccCCCccEEecccCccc----cccc
Q 008856 69 NIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQL-----CQLSCRLEYLILSYCEGL----VKLP 138 (551)
Q Consensus 69 ~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l-----~~~~~~L~~L~L~~~~~l----~~~~ 138 (551)
++ .+... +......+...++|++|++++|. +.......++.++..+ ....+.|+.+.++++..- ..+.
T Consensus 102 ~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~ 179 (344)
T d2ca6a1 102 DN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179 (344)
T ss_dssp SC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred cc-ccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence 85 33321 11112334578999999999974 5432222222222211 124578999999885321 1233
Q ss_pred cccCCCCCCceEEEccCCCCcc------cC-CCCCCCCCcEEEccCCCCccccchh---hhhccCCCccEEEEecCCCcc
Q 008856 139 QSSFSLSSLREIEIFKCSSLVS------FP-EVALPSKLKKIQIGECDALKSLPEA---WMCDTNSSLEILSIHGCRSLT 208 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~------~~-~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~ 208 (551)
..+..+++|++|++++|. +.. +. .+...++|+.|++++|. +...... -....+++|++|++++|. ++
T Consensus 180 ~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~ 256 (344)
T d2ca6a1 180 KTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LS 256 (344)
T ss_dssp HHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CC
T ss_pred chhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cC
Confidence 445677899999999863 432 11 24568899999999875 3332111 011234889999999975 33
Q ss_pred eeccc--------cCCCCccEEEEecCCCccccc---ccccccccCCCcccccCCccEEEEecC
Q 008856 209 YIAAV--------QLPSSLKMLTIWYCDNIRTLT---VEEGIQCSSSSRRYTSYLLEHLGIRYC 261 (551)
Q Consensus 209 ~~~~~--------~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~~~~~~~~~~~L~~L~l~~c 261 (551)
+.... ...+.|++|+++++ .++.-+ +...+.. ..++|++|++++.
T Consensus 257 ~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~-------~~~~L~~L~l~~N 312 (344)
T d2ca6a1 257 ARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDE-------KMPDLLFLELNGN 312 (344)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHH-------HCTTCCEEECTTS
T ss_pred chhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHc-------cCCCCCEEECCCC
Confidence 32211 12367999999985 455321 0222210 2457999999883
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=6.4e-07 Score=74.86 Aligned_cols=83 Identities=27% Similarity=0.255 Sum_probs=38.7
Q ss_pred CCCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc
Q 008856 59 IPKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP 138 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~ 138 (551)
+++|++|++++.+.++.+ +...|..+++|+.|+++++ +++.+++. ++..+ ++|++|+|++| .++.++
T Consensus 30 l~~l~~L~l~~n~~l~~i---~~~~f~~l~~L~~L~Ls~N-~l~~i~~~----~f~~l----~~L~~L~Ls~N-~l~~l~ 96 (156)
T d2ifga3 30 AENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIVKS-GLRFVAPD----AFHFT----PRLSRLNLSFN-ALESLS 96 (156)
T ss_dssp CSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECCSS-CCCEECTT----GGGSC----SCCCEEECCSS-CCSCCC
T ss_pred ccccCeeecCCCcccccc---CchhhccccccCcceeecc-ccCCcccc----ccccc----ccccceeccCC-CCcccC
Confidence 445555555543445544 4444455555555555553 35555442 23333 55555555552 334444
Q ss_pred cccCCCCCCceEEEcc
Q 008856 139 QSSFSLSSLREIEIFK 154 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~ 154 (551)
.+.....+|++|++++
T Consensus 97 ~~~~~~~~l~~L~L~~ 112 (156)
T d2ifga3 97 WKTVQGLSLQELVLSG 112 (156)
T ss_dssp STTTCSCCCCEEECCS
T ss_pred hhhhccccccccccCC
Confidence 3333333444444444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.4e-06 Score=72.71 Aligned_cols=105 Identities=16% Similarity=0.120 Sum_probs=73.3
Q ss_pred CCccEEEecCCCCchhhcccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCccccccc-
Q 008856 60 PKLEELKINNIQNETCIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLP- 138 (551)
Q Consensus 60 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~- 138 (551)
...+.++.++ +++.+. +.. +..+++|++|++.+++.++.++.. ++..+ ++|+.|++++| .+..++
T Consensus 8 ~~~~~l~c~~-~~~~~~---p~~-l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l----~~L~~L~Ls~N-~l~~i~~ 73 (156)
T d2ifga3 8 HGSSGLRCTR-DGALDS---LHH-LPGAENLTELYIENQQHLQHLELR----DLRGL----GELRNLTIVKS-GLRFVAP 73 (156)
T ss_dssp SSSSCEECCS-SCCCTT---TTT-SCSCSCCSEEECCSCSSCCEECGG----GSCSC----CCCSEEECCSS-CCCEECT
T ss_pred CCCCeEEecC-CCCccC---ccc-ccCccccCeeecCCCccccccCch----hhccc----cccCcceeecc-ccCCccc
Confidence 3445667776 444444 433 567788899998876668888764 36666 88999999885 556664
Q ss_pred cccCCCCCCceEEEccCCCCcccCC-CCCCCCCcEEEccCCC
Q 008856 139 QSSFSLSSLREIEIFKCSSLVSFPE-VALPSKLKKIQIGECD 179 (551)
Q Consensus 139 ~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~ 179 (551)
..+..+++|++|++++ +.++.++. .....+|+.|++++|+
T Consensus 74 ~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 74 DAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp TGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred ccccccccccceeccC-CCCcccChhhhccccccccccCCCc
Confidence 4577888899999988 56777776 3334568888888765
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.98 E-value=0.0002 Score=59.85 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=45.5
Q ss_pred CCCccEEEecCCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcc--c-
Q 008856 59 IPKLEELKINNIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEG--L- 134 (551)
Q Consensus 59 ~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~--l- 134 (551)
.++|++|++++| .+.+- ....+..+...+.|++|++++|. ++.-....++.++.. .+.|++|+++++.. +
T Consensus 43 n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~aL~~----n~sL~~L~l~~n~~~~~g 116 (167)
T d1pgva_ 43 SKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLV----TQSIVEFKADNQRQSVLG 116 (167)
T ss_dssp CSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTT----TCCCSEEECCCCSSCCCC
T ss_pred CCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHHHHHHHh----CCcCCEEECCCCcCCCcc
Confidence 456777777764 33322 00112233456677777777763 554333222233332 36677777776421 1
Q ss_pred ----cccccccCCCCCCceEEEcc
Q 008856 135 ----VKLPQSSFSLSSLREIEIFK 154 (551)
Q Consensus 135 ----~~~~~~~~~l~~L~~L~l~~ 154 (551)
..+...+...++|++|+++.
T Consensus 117 ~~~~~~l~~~L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 117 NQVEMDMMMAIEENESLLRVGISF 140 (167)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHHhCCCccEeeCcC
Confidence 11233444556777777654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.00032 Score=58.26 Aligned_cols=63 Identities=21% Similarity=0.101 Sum_probs=28.7
Q ss_pred cccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccccccc-ccCCCCCCceEEEccC
Q 008856 85 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLVKLPQ-SSFSLSSLREIEIFKC 155 (551)
Q Consensus 85 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~-~~~~l~~L~~L~l~~c 155 (551)
..++.|++|+++++ +++.+++.. ..+..+ ++|+.|++++| .+..++. ......+|++|+++++
T Consensus 62 ~~~~~L~~L~Ls~N-~i~~l~~~~--~~~~~l----~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~N 125 (162)
T d1koha1 62 ENIPELLSLNLSNN-RLYRLDDMS--SIVQKA----PNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGN 125 (162)
T ss_dssp HHCTTCCCCCCCSS-CCCCCSGGG--THHHHS----TTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred HhCCCCCEeeCCCc-cccCCchhH--HHHhhC----CcccccccccC-ccccchhhhhhhccccceeecCCC
Confidence 34556666666653 355543210 112223 56666666653 3333332 1112334566666553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.00026 Score=58.79 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=26.5
Q ss_pred CCccEEecccCcccccc---ccccCCCCCCceEEEccCCCCcccCCC--CCCCCCcEEEccCCC
Q 008856 121 CRLEYLILSYCEGLVKL---PQSSFSLSSLREIEIFKCSSLVSFPEV--ALPSKLKKIQIGECD 179 (551)
Q Consensus 121 ~~L~~L~L~~~~~l~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~ 179 (551)
++|++|++++| .++.+ +..+..+++|+.|++++ +.++.++.. ....+|+.+++++|+
T Consensus 65 ~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 65 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp TTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred CCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCC
Confidence 55555555553 22322 22233455555555555 344444431 112345555555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.46 E-value=0.00092 Score=55.56 Aligned_cols=122 Identities=12% Similarity=-0.001 Sum_probs=57.5
Q ss_pred ccCCCCcceEEeCCCCCccccccccccceeeeccccCcccceeccCCcCCCCCCccEEEecCCCCchhh-cccCcchhcc
Q 008856 8 ITSLPALCKMEIGGCKKVVWRSATDHLGSQNSVVCRDASNQVFLAGPLKPRIPKLEELKINNIQNETCI-WKSHNELLQD 86 (551)
Q Consensus 8 ~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~ 86 (551)
....|.|++|++++++.+...... .+. ......++|++|++++| .+..- +..-...+..
T Consensus 13 ~~~~~~L~~L~L~~~~~i~~~~~~------------------~l~-~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~ 72 (166)
T d1io0a_ 13 QNNDPDLEEVNLNNIMNIPVPTLK------------------ACA-EALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKV 72 (166)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHH------------------HHH-HHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHH
T ss_pred HhcCCCCcEEEcCCCCCCCHHHHH------------------HHH-HHHhcCCccCeeeccCC-cccHHHHHHHHHHHhh
Confidence 455678888888876554411110 000 00112466677777764 32221 1111223345
Q ss_pred cCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCc-ccc-----ccccccCCCCCCceEEEcc
Q 008856 87 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCE-GLV-----KLPQSSFSLSSLREIEIFK 154 (551)
Q Consensus 87 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~-~l~-----~~~~~~~~l~~L~~L~l~~ 154 (551)
.+.++.+++.+|. +..-....+..++.. .++|+.++|+.+. .+. .+...+...++|++|+++.
T Consensus 73 ~~~l~~l~l~~~~-~~~~g~~~l~~~l~~----~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 73 NNTLKSLNVESNF-ISGSGILALVEALQS----NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp CSSCCEEECCSSC-CCHHHHHHHHHGGGG----CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cccchhhhhcccc-ccchhHHHHHHHHHh----CccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence 6677777777653 433222222222332 3667765554322 221 1233444566777777654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.41 E-value=0.0014 Score=54.43 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=50.1
Q ss_pred CCCCccEEEecCCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-
Q 008856 58 RIPKLEELKINNIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV- 135 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~- 135 (551)
+.++|++|++++++.+..- |......+...+.|++|++++|. ++.-....++..+.. .+.|++|+|++|..-.
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~----n~~L~~L~L~~n~i~~~ 87 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIET----SPSLRVLNVESNFLTPE 87 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHH----CSSCCEEECCSSBCCHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhh----cccccceeeehhhcchH
Confidence 3577888888775544332 11122334556778888888763 554333322233333 3778888887763211
Q ss_pred ---ccccccCCCCCCceEEEcc
Q 008856 136 ---KLPQSSFSLSSLREIEIFK 154 (551)
Q Consensus 136 ---~~~~~~~~l~~L~~L~l~~ 154 (551)
.+...+...++|++|++++
T Consensus 88 g~~~l~~aL~~n~sL~~L~l~~ 109 (167)
T d1pgva_ 88 LLARLLRSTLVTQSIVEFKADN 109 (167)
T ss_dssp HHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHHhCCcCCEEECCC
Confidence 1233455556666666655
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.26 E-value=0.0014 Score=54.37 Aligned_cols=93 Identities=25% Similarity=0.151 Sum_probs=53.6
Q ss_pred CCCCccEEEecCCCCchhh-cccCcchhcccCCccEEeecCCccccccchhhhhhhhhhhhccCCCccEEecccCcccc-
Q 008856 58 RIPKLEELKINNIQNETCI-WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCRLEYLILSYCEGLV- 135 (551)
Q Consensus 58 ~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~- 135 (551)
..++|++|++++++.++.- |.....++...++|++|++++| .++.-....++..+... ++++.+++++|..-.
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~----~~l~~l~l~~~~~~~~ 89 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVN----NTLKSLNVESNFISGS 89 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHC----SSCCEEECCSSCCCHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhc----ccchhhhhccccccch
Confidence 3578888888875554332 2112233456778888888886 35554333333334433 788888887764321
Q ss_pred ---ccccccCCCCCCceEEEccC
Q 008856 136 ---KLPQSSFSLSSLREIEIFKC 155 (551)
Q Consensus 136 ---~~~~~~~~l~~L~~L~l~~c 155 (551)
.+...+...++|++++++.+
T Consensus 90 g~~~l~~~l~~~~~L~~l~L~l~ 112 (166)
T d1io0a_ 90 GILALVEALQSNTSLIELRIDNQ 112 (166)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCC
T ss_pred hHHHHHHHHHhCccccEEeeccC
Confidence 23345556667777666543
|