Citrus Sinensis ID: 008858

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-

MQKELSEKLKKIATLSKGSSSDGSGKVQGPAATASDAAAAAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

ccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEccccccccEEEEEcccHHHHHHHHHHccccHHHHHHHcccccc

cHHHHHHHHHHcHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHccHHccccccccccccccccccccccEEEcccccEEcccccEEEcccccccccccccccHcHHHHHHHcccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHcccccccccEEEccHHHcccccccccccccHccccccccccEEEEEcccccccccccccccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEEEEEEccccccccEEEEEEcHHHccccEEEEEccccEEEEEEccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEccccccccccEEEEcccHHHHHHHHHHcccHHHHHHHHcccccc

MQKELSEKLKKIATlskgsssdgsgkvqgpaatASDAAAAAAAasvqpptssvpafpglanitnIEAVKRAQELAAKmgfrqdpefapiincfpgqppvdaavpqkptkapvlRVDALGReidehgnvvnrtkpsnlstLKVNINKQKKDAFQilkpelevdpnvnphfdprmginkskllrpkrmtfqfveegkwsKEAEILRVKSQFGEAGAKERQAKQAQLAKakggtdinpnLIEVAERVItkekpkdpipeiewwdapllltgsyadisddvtiedKLKREKITiyvehprpieppaepappppqplkltKKEQKKLRTQRRLAREKDRQEMIRqglieppkpkvkmSNLMKVLgseatqdptRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKerklfddpssveTIVSVYKindlshpktrfkvdvnahenrltgCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKavkeedededettdkpvnkCVLVWqgnvarpsfnrfFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

MQKELSEKLKKIatlskgsssdgsgKVQGPAATASDAAAAAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGreidehgnvvnrtkpsnlstlkvNINKQKKDAFQILKPELEVDPNVNPHFDPrmginkskllrpkRMTFQFveegkwskeaEILRVKSQFGEAGAKERQAKQAQLakakggtdinpnLIEVAERVitkekpkdpipeiewWDAPLLLTGSYADISDDVTIEDKLKREKITIYvehprpieppaepappppqplkltkkeqkklrtqrrlarekdrqemirqglieppkpkvkMSNLMKVLgseatqdptrLEKEIRSAAAereqahidrniarkltpaerrekkerklfddpssvetIVSVykindlshpktrFKVDVNAHENRLTGCAVICEGINVVvveggsksikrygKLMLRRIDWakavkeedededettdkpvnkcVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

MQKELSEKLKKIATLskgsssdgsgkVQGpaatasdaaaaaaaasvqpptssvpaFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGakerqakqaqlakakGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHprpieppaepappppqplkltkkeqkklrtqrRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKeedededettdKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

********************************************************PGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPG*****************LRVDAL*********************************FQIL*****************************RMTFQFVEEGKWS***EIL********************************NLIEVAERVITK****DPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYV*************************************************************************************************************************VETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAV**************VNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNF****

***********************************************************************************************************************************************************************H*********************FVEEGKWSK***************************************IEVAERVIT****KDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPI****************************************************KMSNLMKVLGSEATQDPTRLEKEIRSAA***********************************VETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDW*******************NKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFN***

********LKKIAT*************************************SVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQF******************KGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPLKLT*******************QEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAV************KPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

*******KLKKI***********************************************ANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILK**L*****VN***DPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVK********TTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFN***

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MQKELSEKLKKIATLSKGSSSDGSGKVQGPAATASDAAAAAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPxxxxxxxxxxxxxxxxxxxxxxxQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		551	2.2.26 [Sep-21-2011]
Q2KIA6		683	U4/U6 small nuclear ribon	yes	no	0.825	0.666	0.380	1e-71
O43395		683	U4/U6 small nuclear ribon	yes	no	0.744	0.600	0.403	2e-71
Q922U1		683	U4/U6 small nuclear ribon	yes	no	0.744	0.600	0.405	2e-71
Q5R5F1		683	U4/U6 small nuclear ribon	yes	no	0.744	0.600	0.403	2e-71
Q5ZJ85		684	U4/U6 small nuclear ribon	yes	no	0.765	0.616	0.393	1e-69
Q09856		542	Uncharacterized protein C	yes	no	0.718	0.730	0.337	8e-48
Q03338		469	U4/U6 small nuclear ribon	yes	no	0.671	0.788	0.267	3e-17

>sp\|Q2KIA6\|PRPF3_BOVIN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus GN=PRPF3 PE=2 SV=1	Back alignment and function desciption

 Score =  271 bits (692), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 199/523 (38%), Positives = 283/523 (54%), Gaps = 68/523 (13%)

Query: 39  AAAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPP 98
           AA   AS+Q   +  P   G AN+  +  +         MG       AP        P 
Sbjct: 206 AAELQASIQAQLALKPGLIGNANMVGLANLH-------AMGI------AP--------PK 244

Query: 99  VDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAF-QILKP 157
           V+     KPT  P++ +D  GR +D  G  +  T    + TLK NI   K++ F Q LK 
Sbjct: 245 VELKDQTKPT--PLI-LDEQGRTVDATGKEIELT--HRMPTLKANIRAVKREQFKQQLKE 299

Query: 158 ELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKER 217
           +   D   N  FDPR+ I  S+    +R TF+F ++GK+ K A+ LR K+Q      ++ 
Sbjct: 300 KPSEDMESNTFFDPRVSIAPSQR---QRRTFKFHDKGKFEKIAQRLRTKAQL-----EKL 351

Query: 218 QAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDV 277
           QA+ +Q A+ K G   +  L  +A +   KE  +  IPEIEWWD+ ++  G       D+
Sbjct: 352 QAEISQAAR-KTGIHTSTRLALIAPK---KELKEGDIPEIEWWDSYIIPNGF------DL 401

Query: 278 TIEDKLKREK---ITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDR 334
           T E+  KRE    IT  VEHP  + PP +   P    + LTKKEQKKLR Q R   +K+ 
Sbjct: 402 T-EENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKEL 460

Query: 335 QEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKL 394
           QE +R GL+ PP+PKV++SNLM+VLG+EA QDPT++E  +R+  A+R++AH + N ARKL
Sbjct: 461 QEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKL 520

Query: 395 TPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGI 454
           T AE+R+ K+ K   +  S    +SVY++ +LS+P  +FK++ NA +  LTG  V+ + +
Sbjct: 521 T-AEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDV 579

Query: 455 NVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTD-----------KPVNKCVL 503
           NVVVVEGG K+ K++ +LML RI W       DE    T             K  NKCVL
Sbjct: 580 NVVVVEGGPKAQKKFKRLMLHRIKW-------DEQTSNTKGDDDEESDEEAVKKTNKCVL 632

Query: 504 VWQGNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVN 546
           VW+G     SF      +C TE  A++ F   G  HYWDLA++
Sbjct: 633 VWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALS 675

Participates in pre-mRNA splicing. May play a role in the assembly of the U4/U5/U6 tri-snRNP complex.
Bos taurus (taxid: 9913)

>sp\|O43395\|PRPF3_HUMAN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2	Back alignment and function description

>sp\|Q922U1\|PRPF3_MOUSE U4/U6 small nuclear ribonucleoprotein Prp3 OS=Mus musculus GN=Prpf3 PE=1 SV=1	Back alignment and function description

>sp\|Q5R5F1\|PRPF3_PONAB U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii GN=PRPF3 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZJ85\|PRPF3_CHICK U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus GN=PRPF3 PE=2 SV=1	Back alignment and function description

>sp\|Q09856\|YAF2_SCHPO Uncharacterized protein C29E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29E6.02 PE=4 SV=1	Back alignment and function description

>sp\|Q03338\|PRP3_YEAST U4/U6 small nuclear ribonucleoprotein PRP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		551
297736440		882	unnamed protein product [Vitis vinifera]	0.996	0.622	0.747	0.0
359486305		581	PREDICTED: U4/U6 small nuclear ribonucle	0.996	0.944	0.747	0.0
449507556		923	PREDICTED: LOW QUALITY PROTEIN: U4/U6 sm	0.989	0.590	0.744	0.0
449451683		923	PREDICTED: U4/U6 small nuclear ribonucle	0.989	0.590	0.747	0.0
356574993		801	PREDICTED: U4/U6 small nuclear ribonucle	0.992	0.682	0.730	0.0
356540367		851	PREDICTED: U4/U6 small nuclear ribonucle	0.998	0.646	0.707	0.0
356495750		832	PREDICTED: U4/U6 small nuclear ribonucle	0.996	0.659	0.709	0.0
224100899		473	predicted protein [Populus trichocarpa]	0.854	0.995	0.801	0.0
224109628		473	predicted protein [Populus trichocarpa]	0.852	0.993	0.805	0.0
357444987		794	U4/U6 small nuclear ribonucleoprotein Pr	0.969	0.672	0.694	0.0

>gi\|297736440\|emb\|CBI25311.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/583 (74%), Positives = 491/583 (84%), Gaps = 34/583 (5%)

Query: 1   MQKELSEKLKKIATLSKGS--SSDGS----------------GKVQG--PAATASDAAA- 39
           MQKELSEKLKKI  L+KG+  SSDGS                GK+ G  P  TA++A + 
Sbjct: 302 MQKELSEKLKKIPLLNKGASPSSDGSPQLKPKEEVTLPSSTTGKLLGSVPLTTATEAVSL 361

Query: 40  ----------AAAAASVQPPTSSVPAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPI 89
                     AAAAASV P  S V A  GL ++ N EAVKRAQELAAKMGFRQDPEFAP+
Sbjct: 362 VAMPSTSTLPAAAAASVMPSASGVGALAGLTSMPNFEAVKRAQELAAKMGFRQDPEFAPL 421

Query: 90  INCFPGQPPVDAAVPQKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKK 149
           IN FPGQ P D AV QKP KAPVLR+DALGREIDEHGNVVN  K +NLSTLKVNINKQKK
Sbjct: 422 INMFPGQMPTDVAVQQKPAKAPVLRLDALGREIDEHGNVVNMPKLNNLSTLKVNINKQKK 481

Query: 150 DAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQF 209
           DAFQILKPEL+VDP  NPHFD RMGI+K+KLLRPKRM FQFVEEGKWS++AEI+++KSQF
Sbjct: 482 DAFQILKPELDVDPESNPHFDSRMGIDKNKLLRPKRMNFQFVEEGKWSRDAEIIKLKSQF 541

Query: 210 GEAGAKERQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGS 269
           GEA AKE +AKQAQLA+AK   DINPNLIEV+ERVI KEKPKD IPE+EWWD P L +G+
Sbjct: 542 GEAQAKELKAKQAQLARAKAEPDINPNLIEVSERVIIKEKPKDQIPEVEWWDVPFLHSGT 601

Query: 270 YADISDDVTIEDKLKREKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLA 329
           Y D    +T EDKLK +KITIY+EHPRPIEPPAEPAPPPPQPLKLTK+EQKKLRTQRRLA
Sbjct: 602 YGDTDGGIT-EDKLKMDKITIYLEHPRPIEPPAEPAPPPPQPLKLTKREQKKLRTQRRLA 660

Query: 330 REKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRN 389
           REKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLE EIRSAAAEREQAH+DRN
Sbjct: 661 REKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEMEIRSAAAEREQAHVDRN 720

Query: 390 IARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAV 449
           IARKLTPAERREKKERKLFDDP+++ETIVSVYKINDLSHP+TRFKVD+NA ENRLTGCAV
Sbjct: 721 IARKLTPAERREKKERKLFDDPNTLETIVSVYKINDLSHPQTRFKVDINAQENRLTGCAV 780

Query: 450 ICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNV 509
           I +GI+VVVVEGGSK IKRYGKLML+RI+WA AV+ E +D+++  +KP+N CVLVWQG+V
Sbjct: 781 ISDGISVVVVEGGSKPIKRYGKLMLKRINWAAAVENE-DDDEDENEKPLNSCVLVWQGSV 839

Query: 510 ARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFN-DEI 551
           A+PSFN+F  H+C TEAAA+K+F+DAGV HYWDLAVNF+ D+I
Sbjct: 840 AKPSFNKFNFHQCRTEAAARKIFSDAGVGHYWDLAVNFSGDQI 882

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359486305\|ref\|XP_002275798.2\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449507556\|ref\|XP_004163065.1\| PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449451683\|ref\|XP_004143591.1\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356574993\|ref\|XP_003555627.1\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356540367\|ref\|XP_003538661.1\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356495750\|ref\|XP_003516736.1\| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Glycine max]	Back alignment and taxonomy information

>gi\|224100899\|ref\|XP_002312058.1\| predicted protein [Populus trichocarpa] gi\|222851878\|gb\|EEE89425.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224109628\|ref\|XP_002315261.1\| predicted protein [Populus trichocarpa] gi\|222864301\|gb\|EEF01432.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357444987\|ref\|XP_003592771.1\| U4/U6 small nuclear ribonucleoprotein Prp3 [Medicago truncatula] gi\|355481819\|gb\|AES63022.1\| U4/U6 small nuclear ribonucleoprotein Prp3 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		551
TAIR\|locus:2010519		786	AT1G28060 "AT1G28060" [Arabido	0.406	0.284	0.723	6.3e-168
TAIR\|locus:2082003		437	AT3G55930 "AT3G55930" [Arabido	0.517	0.652	0.531	3.5e-86
UNIPROTKB\|H9L3J2		684	RPRD2 "Uncharacterized protein	0.764	0.615	0.353	5.5e-61
UNIPROTKB\|F2Z4C4		683	PRPF3 "U4/U6 small nuclear rib	0.735	0.592	0.365	3.9e-60
UNIPROTKB\|Q2KIA6		683	PRPF3 "U4/U6 small nuclear rib	0.735	0.592	0.365	3.9e-60
UNIPROTKB\|E2R4I0		683	PRPF3 "Uncharacterized protein	0.735	0.592	0.365	3.9e-60
UNIPROTKB\|E7EVD1		634	PRPF3 "U4/U6 small nuclear rib	0.735	0.638	0.365	3.9e-60
UNIPROTKB\|O43395		683	PRPF3 "U4/U6 small nuclear rib	0.735	0.592	0.365	3.9e-60
UNIPROTKB\|I3LJQ7		683	PRPF3 "Uncharacterized protein	0.735	0.592	0.365	3.9e-60
RGD\|1310555		683	Prpf3 "PRP3 pre-mRNA processin	0.735	0.592	0.365	5e-60

TAIR\|locus:2010519 AT1G28060 "AT1G28060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 859 (307.4 bits), Expect = 6.3e-168, Sum P(2) = 6.3e-168
 Identities = 162/224 (72%), Positives = 193/224 (86%)

Query:   327 RLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHI 386
             RLA+EK++QEMIRQGL+EPPK KVKMSNLMKVLGSEATQDPT+LEKEIR+AAAEREQAH 
Sbjct:   563 RLAKEKEKQEMIRQGLLEPPKAKVKMSNLMKVLGSEATQDPTKLEKEIRTAAAEREQAHT 622

Query:   387 DRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTG 446
             DRN ARKLTPAE+REKKERKLFDDP++VETIVSVYKI  LSHPKTRFKV++NA ENRLTG
Sbjct:   623 DRNAARKLTPAEKREKKERKLFDDPTTVETIVSVYKIKKLSHPKTRFKVEMNARENRLTG 682

Query:   447 CAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKXXXXXXXXXXXKPVNKCVLVWQ 506
             C+V+ + ++VVVVEG SK+IKRYGKLM++RI+W +A +              NKC LVWQ
Sbjct:   683 CSVMTDEMSVVVVEGKSKAIKRYGKLMMKRINWEEAERKEGNEDEEEEVNGGNKCWLVWQ 742

Query:   507 GNVARPSFNRFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDE 550
             G++ +PSF+RF VHEC+TE+ AKKVF DAGV HYWDLAVN++D+
Sbjct:   743 GSIGKPSFHRFHVHECVTESTAKKVFMDAGVVHYWDLAVNYSDD 786

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2082003 AT3G55930 "AT3G55930" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|H9L3J2 RPRD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F2Z4C4 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2KIA6 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R4I0 PRPF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EVD1 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|O43395 PRPF3 "U4/U6 small nuclear ribonucleoprotein Prp3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LJQ7 PRPF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1310555 Prpf3 "PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029506001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (617 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025837001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (1007 aa)	•	•	•	0.493
	GSVIVG00025331001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (569 aa)		•	•	0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		551
pfam08572		222	pfam08572, PRP3, pre-mRNA processing factor 3 (PRP	1e-81
pfam06544		127	pfam06544, DUF1115, Protein of unknown function (D	2e-45

>gnl\|CDD\|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3)	Back alignment and domain information

 Score =  254 bits (650), Expect = 1e-81
 Identities = 117/233 (50%), Positives = 151/233 (64%), Gaps = 14/233 (6%)

Query: 166 NPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLA 225
           NP+ DPRM   K K  + +R   QF+E+GK+S++AE LR +++  E   + R +++AQ A
Sbjct: 2   NPYLDPRMAEAKRK--KRRRRGLQFIEKGKFSQQAEELRREAKLEEE--EARISEEAQNA 57

Query: 226 KAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKR 285
             K  TD+       AE++  KE P D +P+IEWWD P+L    Y D+ D+   +   + 
Sbjct: 58  GLKSATDL-------AEKIPKKELPDD-VPDIEWWDMPILDDPDYNDLEDESDEDIDEEM 109

Query: 286 EKITIYVEHPRPIEPPAEPAPPPP--QPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLI 343
             IT Y+EHP PIEPP E   PPP   PL LTKKEQKKLR QRR  + K++QE IR GL 
Sbjct: 110 SSITNYIEHPVPIEPPWEAHYPPPIRPPLYLTKKEQKKLRRQRRKEKRKEKQERIRLGLE 169

Query: 344 EPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTP 396
            PP PKVK+SNLM+VLGSEA QDPT++E E+R   AER QAH DRN  RKLT 
Sbjct: 170 PPPPPKVKLSNLMRVLGSEAVQDPTKVEAEVRRQVAERRQAHEDRNEERKLTA 222

Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor. The human PRP3 has been implicated in autosomal retinitis pigmentosa. Length = 222

>gnl\|CDD\|219080 pfam06544, DUF1115, Protein of unknown function (DUF1115)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		551
KOG2769		522	consensus Putative u4/u6 small nuclear ribonucleop	100.0
PF08572		223	PRP3: pre-mRNA processing factor 3 (PRP3); InterPr	100.0
PF06544		128	DUF1115: Protein of unknown function (DUF1115); In	100.0
PF04940		93	BLUF: Sensors of blue-light using FAD; InterPro: I	95.97

>KOG2769 consensus Putative u4/u6 small nuclear ribonucleoprotein [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=2.9e-130  Score=1028.40  Aligned_cols=425  Identities=50%  Similarity=0.746  Sum_probs=376.7

Q ss_pred             ccccHHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCCC--CCCCCCCCceEecCCC--CeeccCCCeeeccCCCc
Q 008858           61 NITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAV--PQKPTKAPVLRVDALG--REIDEHGNVVNRTKPSN  136 (551)
Q Consensus        61 ~~~~~~~~~~a~~~a~~~~~~q~~~~~~~~~~~p~~~~~~~~~--~~~~~k~~~L~lD~~G--R~iD~~G~vI~~~kp~~  136 (551)
                      +....++++|++.|+..              ++++..+.++.+  +..|+++..|+.|+.|  |.||+.|++|. ++|+.
T Consensus        94 s~~~~~~~~r~~~L~~~--------------~~~~~~t~~~~~~~a~~~tkg~~l~~~~le~~r~i~e~~~~i~-t~~~~  158 (522)
T KOG2769|consen   94 SKQILEAVKRPQELAQN--------------IQNSIRTPDMPISKAIKQTKGAVLRQDALEKKRKIDELGNVID-TKPSN  158 (522)
T ss_pred             hHHHHHHHhhhhhhccc--------------cccccCCcccchhhhhcccccceeehhhhhhhhhHhhhcchhh-ccccc
Confidence            56677888888888776              334444445556  7889999999999999  99999999999 78888


Q ss_pred             ccchhhhhhhhhhhHHHhcCCCcCCCCCCCCCCCCCCCCCcccccCCCccceeeccCchhHHHHHHHHHHhhhchHhHHH
Q 008858          137 LSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRMGINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKE  216 (551)
Q Consensus       137 ~~TLKaNir~~k~e~~~~~k~~~~~~~~~npyfD~r~~~~~~k~~r~kr~~f~F~e~Gk~~k~Ae~lR~k~~l~e~~~e~  216 (551)
                      .|+|..|++                         ++ ...  ...| .|++|+||++|+|++.|++.|.++++     ++
T Consensus       159 ~~~li~n~d-------------------------~~-~~~--~~~r-~rr~f~f~e~gkf~~~an~~r~~a~l-----e~  204 (522)
T KOG2769|consen  159 LSGLIPNLD-------------------------PR-TKK--PRKR-GRRTFLFHESGKFIKLANRHRYKAQL-----ER  204 (522)
T ss_pred             ccccccccC-------------------------hh-hcc--chhc-cccceeecccchHHHHHHHHHHHHHH-----HH
Confidence            888877754                         33 111  2234 45699999999999999999988776     68


Q ss_pred             HHHHHHHHHHhcCCCCCCcchHHHHhhhhccCCCCCCCCccccccccccCCCCCCCCCcccchhhhhccccccceeeCCC
Q 008858          217 RQAKQAQLAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVEHPR  296 (551)
Q Consensus       217 l~~~~a~~a~~k~~~~i~~~l~~~~~~~~~k~~~~~~iP~VEWWD~~iL~~~~y~~i~~~~~~~~~~~~~~it~yIeHPv  296 (551)
                      |+.++++++++.   ||++ ++.++...+     .++||+|||||.+||+.+.|.+.     +...+....||+|||||+
T Consensus       205 Lq~eis~~a~k~---gI~~-~~~la~~~p-----~~~iP~iEwwD~~il~~~d~~dE-----n~~~i~~~~it~~IeHP~  270 (522)
T KOG2769|consen  205 LQNEISQAARKT---GIST-ATKLALIAP-----KDDIPAIEWWDSNILTNDDTIDE-----NHLKIDQSIITNLIEHPI  270 (522)
T ss_pred             HHHHHHHHHHhc---CCch-hhhhhhccC-----CCCCchhhhhcccccccCCcccc-----cchhhhHHHHHHHhcCCc
Confidence            999999999853   5766 667777654     38999999999999998733322     223444578999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhhhhhhhccccCCCChHHHHHHHH
Q 008858          297 PIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTRLEKEIRS  376 (551)
Q Consensus       297 pi~pp~e~~~~~~~pl~LTKKEqKKlRRqrR~e~~kEkQdKIRLGL~PPP~PKVKLSNLMrVLg~eAV~DPTkvE~~VR~  376 (551)
                      ||.||.++..|+++|||||||||||||||||+|++||+|+||||||+|||+|||||||||+|||+|||||||+||++||.
T Consensus       271 ~~~PP~e~~~p~~l~vyLTKKErKKLRRQ~R~ea~KEkqekIrLGL~~ppePKVKiSNLMrVLgsEAiqDPTK~E~~VR~  350 (522)
T KOG2769|consen  271 PMLPPAENLTPVSLPVYLTKKERKKLRRQRRKEARKEKQEKIRLGLEPPPEPKVKLSNLMRVLGSEAIQDPTKLEAEVRD  350 (522)
T ss_pred             ccCCCcccCCCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHhhhccccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHhhhcCCCCCCceEEEEEEEcCCCCCccccccccccccccceeEEEecCCceE
Q 008858          377 AAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINV  456 (551)
Q Consensus       377 Qm~eR~~~He~~N~~RKLT~EqR~eKk~~K~~~d~~~~~v~~aVyrI~~Lsnp~~rFKV~~NAqQl~LtG~~l~~~~~~l  456 (551)
                      ||++|+++||++|++||||++||++|+.+|+.+|+ +.||||+||+|++|+||++||||++||+||+||||||++.++||
T Consensus       351 Q~aeR~kaHe~~N~aRKLT~~qkreKk~rKl~ED~-st~v~~~V~r~K~l~~p~~rFKve~NAkql~ltG~~vl~~d~~v  429 (522)
T KOG2769|consen  351 QMAERQKAHEDENAARKLTPEQKREKKERKLFEDP-STGVHCSVYRIKNLQNPKKRFKVEMNAKQLQLTGVCVLHRDMNV  429 (522)
T ss_pred             HHHHHHHHhhhhhhhhcCCHHHHHHHHHhhhccCC-CceEEEEEEEEecccCCccceeeeechhhhceeeeEEEecCCcE
Confidence            99999999999999999999999999999999998 57999999999999999999999999999999999999999999


Q ss_pred             EEEecchhHHHHHhhhhhhccCcCccccccCcCccccCCCCCCeeEEEEeeecCCCCCCCeeEEecCCHHHHHHHHHhcC
Q 008858          457 VVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFADAG  536 (551)
Q Consensus       457 VVVEGg~KsikkYkkLMl~RIkW~e~~~~~~~~~~~~~d~~~N~C~LVWEG~vk~r~F~~w~~k~c~te~~Are~L~~~~  536 (551)
                      ||||||+||||||++|||+||||+|++.. ..++|++.+..+|+|+|||||++.+|+|++|+|+.|+|+.+||++|++||
T Consensus       430 vVvEGg~Ka~KkykrLMl~RIkW~e~~~~-k~d~~~e~~~~~N~C~lvWEG~~~rr~F~~~~~k~c~~e~~Ar~~f~k~g  508 (522)
T KOG2769|consen  430 VVVEGGPKAQKKYKRLMLKRIKWEEDFEL-KKDEDEEAVNGGNKCVLVWEGTVQRRSFREFKFKECPTEKMAREFFEKHG  508 (522)
T ss_pred             EEEecCHHHHHHHHHHHHhhcCchhhhhh-cccchhhccCCCceEEEEeeccccCCcccceeEEecCcHHHHHHHHHHcc
Confidence            99999999999999999999999999631 22555677889999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhcccCC
Q 008858          537 VAHYWDLAVNFNDE  550 (551)
Q Consensus       537 ~ehyWdlA~~~~~~  550 (551)
                      |+||||||+||+..
T Consensus       509 veHyWdLa~s~s~~  522 (522)
T KOG2769|consen  509 VEHYWDLAYSYSVL  522 (522)
T ss_pred             hHHHHHHHhhccCC
Confidence            99999999999863

>PF08572 PRP3: pre-mRNA processing factor 3 (PRP3); InterPro: IPR013881 Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated splicing factor	Back alignment and domain information

>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function	Back alignment and domain information

>PF04940 BLUF: Sensors of blue-light using FAD; InterPro: IPR007024 An FAD-binding domain, BLUF, exemplified by the N terminus of the AppA protein, (Q53119 from SWISSPROT), from Rhodobacter sphaeroides, is present in various proteins, primarily from Bacteria	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		551
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 69.1 bits (168), Expect = 2e-12
 Identities = 65/484 (13%), Positives = 128/484 (26%), Gaps = 151/484 (31%)

Query: 105 QKPTKAPVLRVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPN 164
           +   + P +       + D   N        N+S L+     + + A   L+P      N
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPA----KN 152

Query: 165 VNPHFDPRM-GINKSKL----LRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQA 219
           V       + G  K+ +        ++  +   +  W                 + E   
Sbjct: 153 VLID---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----------LKNCNSPETVL 199

Query: 220 KQAQ-LAKAKGGTDINPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYAD---ISD 275
           +  Q L        I+PN    ++        K  I  I+     LL +  Y +   +  
Sbjct: 200 EMLQKLL-----YQIDPNWTSRSDH---SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 276 DVTIEDKLK------------REK-ITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKL 322
           +V                   R K +T ++          +          LT  E K L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-----LTPDEVKSL 306

Query: 323 RTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNL-MKVLGSEATQDPTRLEKEIRSAAAER 381
                L +  D      Q L   P+  +  +   + ++           +   +    ++
Sbjct: 307 -----LLKYLD---CRPQDL---PREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDK 354

Query: 382 EQAHIDRNIARKLTPAERREKKERKLFDDPSSVETIVSVYKINDLSHPKTRFKVDVNAHE 441
               I+ ++   L PAE      RK+FD        +SV            F    +   
Sbjct: 355 LTTIIESSLN-VLEPAE-----YRKMFDR-------LSV------------FPPSAH--- 386

Query: 442 NRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKC 501
                       I  +++             ++    W   +K +        +K     
Sbjct: 387 ------------IPTILLS------------LI----WFDVIKSDVMVV---VNKLHKYS 415

Query: 502 VLVWQGNVARPSFNRFFVH--------ECMTEAAAKKVFADAGVAHY--------WDLAV 545
           ++       +P  +   +         +   E A  +      V HY         DL  
Sbjct: 416 LV-----EKQPKESTISIPSIYLELKVKLENEYALHRSI----VDHYNIPKTFDSDDLIP 466

Query: 546 NFND 549
            + D
Sbjct: 467 PYLD 470

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		551
1yrx_A		121	Hypothetical protein RSPH03001874; ferredoxin-like	96.93
2iyg_A		124	APPA, antirepressor of PPSR, sensor of blue light;	96.14
2hfn_A		153	Synechocystis photoreceptor (SLR1694); beta sheet	95.67
1x0p_A		143	Hypothetical protein TLL0078; BLUF, FAD, structura	95.64
2byc_A		137	Blue-light receptor of the BLUF-family; signaling	94.96
3gfz_A		413	Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domai	92.1

>1yrx_A Hypothetical protein RSPH03001874; ferredoxin-like fold, flavin binding, photoreceptor, transcr; HET: FMN D9G; 2.30A {Rhodobacter sphaeroides 2} SCOP: d.58.10.2 PDB: 2bun_A*	Back alignment and structure

Probab=96.93  E-value=0.0018  Score=58.14  Aligned_cols=85  Identities=16%  Similarity=0.307  Sum_probs=68.3

Q ss_pred             ccccccccceeEEEecCCceEEEEecchhHHHHHhhhhhhccCcCccccccCcCccccCCCCCCeeEEEEeeecCCCCCC
Q 008858          436 DVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFN  515 (551)
Q Consensus       436 ~~NAqQl~LtG~~l~~~~~~lVVVEGg~KsikkYkkLMl~RIkW~e~~~~~~~~~~~~~d~~~N~C~LVWEG~vk~r~F~  515 (551)
                      ..|-.+.++||+-+++.+.-+=|.||.+.++..    +..||.=               |..-..|..+-.|.+.+|.|.
T Consensus        30 r~~N~~~gITG~Ll~~~g~F~Q~LEG~~~~V~~----Ly~rI~~---------------D~RH~~v~~l~~~~i~~R~F~   90 (121)
T 1yrx_A           30 QAHNARAQLTGALFYSQGVFFQWLEGRPAAVAE----VMTHIQR---------------DRRHSNVEILAEEPIAKRRFA   90 (121)
T ss_dssp             HHHHHHHTCEEEEEEETTEEEEEEEECHHHHHH----HHHHHHT---------------CTTEEEEEEEEEEEESSCSCS
T ss_pred             HHhhhhcCCEEEEEEeCCEEEEEecCCHHHHHH----HHHHHhc---------------CCCcCCeEEEEeeeccccccC
Confidence            456678999999999999999999999999986    3467762               233457899999999999999


Q ss_pred             CeeEEecCCHHHHHHHHHhcCchhHHHHHhcccCCC
Q 008858          516 RFFVHECMTEAAAKKVFADAGVAHYWDLAVNFNDEI  551 (551)
Q Consensus       516 ~w~~k~c~te~~Are~L~~~~~ehyWdlA~~~~~~~  551 (551)
                      +|.|..+..+.            ..|.++.+++.+|
T Consensus        91 ~WsM~~~~~~~------------~~~~l~~~~~~~~  114 (121)
T 1yrx_A           91 GWHMQLSCSEA------------DMRSLGLAESRQI  114 (121)
T ss_dssp             SEEEEECCCHH------------HHHHTTCCCCCCC
T ss_pred             CCcccccchHH------------HHHhhcccchhhh
Confidence            99999998774            5566666666655

PyMOL of 1yrx

>2iyg_A APPA, antirepressor of PPSR, sensor of blue light; signal transduction; HET: FMN; 2.3A {Rhodobacter sphaeroides} PDB: 2iyi_A*	Back alignment and structure

>2hfn_A Synechocystis photoreceptor (SLR1694); beta sheet ferredoxin-like fold, flavin binding protein, electron transport; HET: FMN; 1.80A {Synechocystis SP} PDB: 2hfo_A* 3mzi_A*	Back alignment and structure

>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics, electron transport; HET: FAD; 2.00A {Thermosynechococcus elongatus} SCOP: d.58.10.2	Back alignment and structure

>2byc_A Blue-light receptor of the BLUF-family; signaling protein, photoreceptor, flavin; HET: FMN; 1.9A {Rhodobacter sphaeroides} SCOP: d.58.10.2	Back alignment and structure

>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		551
d1yrxa1		114	Sensor of blue light AppA {Rhodobacter sphaeroides	96.13
d2byca1		136	Blue light receptor BlrB {Rhodobacter sphaeroides	95.14
d1x0pa1		142	Hypothetical protein Tll0078 {Thermosynechococcus	95.01
d2acya_		98	Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}	87.67
d1apsa_		98	Acylphosphatase {Horse (Equus caballus) [TaxId: 97	87.42

>d1yrxa1 d.58.10.2 (A:17-130) Sensor of blue light AppA {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: BLUF domain
domain: Sensor of blue light AppA
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.13  E-value=0.0043  Score=53.00  Aligned_cols=77  Identities=16%  Similarity=0.296  Sum_probs=64.1

Q ss_pred             cccccccceeEEEecCCceEEEEecchhHHHHHhhhhhhccCcCccccccCcCccccCCCCCCeeEEEEeeecCCCCCCC
Q 008858          437 VNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLMLRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNR  516 (551)
Q Consensus       437 ~NAqQl~LtG~~l~~~~~~lVVVEGg~KsikkYkkLMl~RIkW~e~~~~~~~~~~~~~d~~~N~C~LVWEG~vk~r~F~~  516 (551)
                      .|-..+++||+-+++.+.-+=+.||.+-++..    ++.||.=               |..-..|.++-+|.+..|.|.+
T Consensus        27 ~~N~~~gITG~Ll~~~~~F~Q~LEG~~~~V~~----l~~rI~~---------------D~RH~~v~~l~~~~i~~R~F~~   87 (114)
T d1yrxa1          27 AHNARAQLTGALFYSQGVFFQWLEGRPAAVAE----VMTHIQR---------------DRRHSNVEILAEEPIAKRRFAG   87 (114)
T ss_dssp             HHHHHHTCEEEEEEETTEEEEEEEECHHHHHH----HHHHHHT---------------CTTEEEEEEEEEEEESSCSCSS
T ss_pred             HhccccCCEEEEEEeCCEEEEEeeCCHHHHHH----HHHhccC---------------CCCcCceEEEeecccCccccCC
Confidence            46678899999999999999999999999998    6777762               2233469999999999999999


Q ss_pred             eeEEecCCHHHHHHHH
Q 008858          517 FFVHECMTEAAAKKVF  532 (551)
Q Consensus       517 w~~k~c~te~~Are~L  532 (551)
                      |.|.....+.+.+...
T Consensus        88 W~M~~~~~~~d~~~l~  103 (114)
T d1yrxa1          88 WHMQLSCSEADMRSLG  103 (114)
T ss_dssp             EEEEECCCHHHHHHTT
T ss_pred             CcCcCcccchHHHHhh
Confidence            9999988877766653

PyMOL of d1yrxa1

>d2byca1 d.58.10.2 (A:1-136) Blue light receptor BlrB {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d1x0pa1 d.58.10.2 (A:102-243) Hypothetical protein Tll0078 {Thermosynechococcus elongatus [TaxId: 146786]}	Back information, alignment and structure

>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1apsa_ d.58.10.1 (A:) Acylphosphatase {Horse (Equus caballus) [TaxId: 9796]}	Back information, alignment and structure