Citrus Sinensis ID: 008859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-
Protein Sequence
MAAGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQVYM
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEEEEEEEcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEcccccccccEEEEEEEEcccccccEEEEEEEcccccccEEEEEEEcccccccccEEEEEEEcccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEccccccccccccEEccccEEEccccHHHHHHHHHHHcccEEEEEcEEcccccEEEEccccccccccccHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccHHHHHHHcccccccEEEcccccccccEEEEEEEEccEEccccEEEEEEcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccEEEEEEEccccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEccEEEEEEEcccccccccccHcHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEHHHHcccccccccEEEccccccccccccEEEEEEEEEEccccccHccccccccccccccccccccccccEEEEEEccccccccccccccccccEccccHHHHHHHHHHHHHccEEEEEccEEccEEEEEEcccccccccccccHHHHHHHHHHcccEEEEEEEccccccccccEccccccccccHHHHHHHccccEEEEEcccccccccEEEEEEEEEEEEEcccEEEEEEccccccccEEEEEEcccEccccccccccccccccccHHccccccccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHcccccccHHcHcccccccccEEEHHcHHHHcccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHcccc
Coil and Loop (DISEMBL)
maagddsdkeKVIYLHGDLDLKIirarrlpnmdmMSEHLRRCFtacdvcktpapthetfqdddgvrhtskiirkskiitsdpyvtvvVPQATVARTRVlknsqepvwnehfniplahplsnleiqvkdddvfgaqiigtaaipahtiATGELISRWydiiapsgsppkpgasiqlelkftpcdknplyrqgiagdpehkgvrnayfplrkgshvrlyqdahvtegilpeipldggklykpgtcweDICHAISEAHHLIYIVGWSVFHKIKLIreqtrplprggdltlGELLKYKSEEGVRVLLLVWDdktshdklgvktpgvmathdeeTKKFFKhssvncvlapryassklsyfkQQIVGTIFTHHQKCVLvdtqasgnnrkITAFIGgidlcdgrydtpehrlfrdldtvfkddfhnptypigtkaprepwhdlhcrldgpaaYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRIswilspelslktngttivprddnvvrvskeddpenwhVQIFRsidsgsvkgfpksiediddqvym
Flexible Loop (DISEMBL)
maagddsdkekviylhgdldlkiirARRLPNMDMMSEHLRRCFTACDVCKTPapthetfqdddgvrhTSKIIrkskiitsdpyvtvVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRqgiagdpehkgVRNAYFPLRKGSHVRLYQDAHVtegilpeipldGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIreqtrplprggdLTLGELLKYKSEEGVRVLLLvwddktshdklgvktpgvMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVdtqasgnnrkITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPtypigtkaprepWHDLHCRLDGPAAYDVLINFEQRWrkatklteltfkfkrvshwrddYLIKIGRiswilspelslktngttivprddnvvrvskeddpenwhvqifrsidsgsvkgfpksiediddqvym
Low Complexity Region (SEG)
MAAGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHtskiirkskiitsDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDiiapsgsppkpgasiQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQVYM
Disordered region (IsUnstruct)
***********VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIA************QLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRV*******NWHVQIFRSID********************
Disordered Region (DISOPRED)
*************YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCK********************IIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI**************QLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPE***********PRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQVYM
Disordered Region (DISEMBL)
********KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQVYM
Disordered Region (DISPRO)
********KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTP************************IITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPEL********IVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDD*VY*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQVYM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	551	2.2.26 [Sep-21-2011]
Q9C5Y0	868	Phospholipase D delta OS=	yes	no	0.974	0.618	0.703	0.0
P93733	1083	Phospholipase D beta 1 OS	no	no	0.889	0.452	0.524	1e-148
Q9T053	858	Phospholipase D gamma 1 O	no	no	0.891	0.572	0.480	1e-138
O23078	927	Phospholipase D beta 2 OS	no	no	0.882	0.524	0.477	1e-136
Q9T052	866	Phospholipase D gamma 3 O	no	no	0.894	0.569	0.468	1e-134
Q9T051	856	Phospholipase D gamma 2 O	no	no	0.887	0.571	0.459	1e-131
P93400	808	Phospholipase D alpha 1 O	N/A	no	0.773	0.527	0.464	1e-110
Q41142	808	Phospholipase D alpha 1 O	N/A	no	0.780	0.532	0.450	1e-109
P86387	808	Phospholipase D alpha 1 O	N/A	no	0.773	0.527	0.449	1e-107
Q38882	810	Phospholipase D alpha 1 O	no	no	0.771	0.524	0.454	1e-106

>sp|Q9C5Y0|PLDD1_ARATH Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/550 (70%), Positives = 442/550 (80%), Gaps = 13/550 (2%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPSSSIYIMT 364

Query: 359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFH 418
           +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFH
Sbjct: 365 VVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFH 424

Query: 419 NPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478
           NPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD
Sbjct: 425 NPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDD 484

Query: 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF 538
            LI+IGRISWILSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGF
Sbjct: 485 ALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544

Query: 539 PKSIEDIDDQ 548
           PK  ++ + Q
Sbjct: 545 PKYEDEAEAQ 554

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. May be involved in phosphatidic acid accumulation in the dehydration stress response and in the transduction of hormonal and environmental signals to the microtubules cytoskeleton.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4

>sp|P93733|PLDB1_ARATH Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4

 Score =  525 bits (1352), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 281/536 (52%), Positives = 348/536 (64%), Gaps = 46/536 (8%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
           KV+ LHG+LD+ I  A+ LPNMDM                     H+T  D  G R   K
Sbjct: 267 KVLLLHGNLDIWIYHAKNLPNMDMF--------------------HKTLGDMFG-RLPGK 305

Query: 71  IIRK-SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
           I  + +  ITSDPYV+V V  A + RT V+ NS+ PVW +HF +P+AH  + +   VKD 
Sbjct: 306 IEGQLTSKITSDPYVSVSVAGAVIGRTYVMSNSENPVWMQHFYVPVAHHAAEVHFVVKDS 365

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DV G+Q+IG   IP   I +G  I   Y I+  +G P KPGA++ L +++TP DK  +Y 
Sbjct: 366 DVVGSQLIGLVTIPVEQIYSGAKIEGTYPILNSNGKPCKPGANLSLSIQYTPMDKLSVYH 425

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            G+   P+++GV   YFPLRKG  VRLYQDAHV EG+LP I LD G  Y+ G CW D+  
Sbjct: 426 HGVGAGPDYQGVPGTYFPLRKGGTVRLYQDAHVPEGMLPGIRLDNGMSYEHGKCWHDMFD 485

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AI +A  LIYI GWSV+HK+KLIR++  P     + TLGELL+ KS+EGVRVLLL+WDD 
Sbjct: 486 AIRQARRLIYITGWSVWHKVKLIRDKLGP---ASECTLGELLRSKSQEGVRVLLLIWDDP 542

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQK 369
           TS   LG KT GVMATHDEET++FFKHSSV  +L PR A  + S+ KQ+ VGTI+THHQK
Sbjct: 543 TSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQK 602

Query: 370 CVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG-TKA 428
            V+VD  A GN RKI AF+GG+DLCDGRYDTP+H LFR L T+ KDDFHNPT+    +  
Sbjct: 603 NVIVDADAGGNRRKIIAFVGGLDLCDGRYDTPQHPLFRTLQTIHKDDFHNPTFTGNLSGC 662

Query: 429 PREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISW 488
           PREPWHDLH ++DGPAAYDVL NFE+RW KA K + +  KFK      DD L++I RI  
Sbjct: 663 PREPWHDLHSKIDGPAAYDVLTNFEERWLKAAKPSGIK-KFKTS---YDDALLRIDRIPD 718

Query: 489 ILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIED 544
           IL         G +  P          E+DPE WHVQIFRSIDS SVKGFPK  +D
Sbjct: 719 IL---------GVSDTP-------TVSENDPEAWHVQIFRSIDSNSVKGFPKDPKD 758

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine or N-acylphosphatidylethanolamine as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|Q9T053|PLDG1_ARATH Phospholipase D gamma 1 OS=Arabidopsis thaliana GN=PLDGAMMA1 PE=1 SV=1

 Score =  493 bits (1270), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/535 (48%), Positives = 328/535 (61%), Gaps = 44/535 (8%)

Query: 7   SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVR 66
           S   +V  LHG+LD+ +  A+ LPNMD     L    +     K                
Sbjct: 32  SGSLRVELLHGNLDIWVKEAKHLPNMDGFHNRLGGMLSGLGRKKVEG------------- 78

Query: 67  HTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQV 126
                  KS  ITSDPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   V
Sbjct: 79  ------EKSSKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVV 132

Query: 127 KDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNP 186
           KD D+ G+QI+G   IP   + +G  I   + I+  SG P K GA + L +++TP ++  
Sbjct: 133 KDSDIIGSQIMGAVGIPTEQLCSGNRIEGLFPILNSSGKPCKQGAVLGLSIQYTPMERMR 192

Query: 187 LYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWED 246
           LY+ G+    E  GV   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED
Sbjct: 193 LYQMGVGSGNECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWED 252

Query: 247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVW 306
           +  AI +A  LIYI GWSVFH ++L+R    P     + TLGELLK KS+EGVRVL+LVW
Sbjct: 253 MADAIRQARRLIYITGWSVFHPVRLVRRTNDPT----EGTLGELLKVKSQEGVRVLVLVW 308

Query: 307 DDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTH 366
           DD TS   LG KT GVM T DEET++FFKHSSV  +L PR      S+ K+  VGTI+TH
Sbjct: 309 DDPTSRSLLGFKTQGVMNTSDEETRRFFKHSSVQVLLCPRSGGKGHSFIKKSEVGTIYTH 368

Query: 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY-PIG 425
           HQK V+VD +A+ N RKI AF+GG+DLC+GR+DTP+H LFR L T+ KDDFHNP +    
Sbjct: 369 HQKTVIVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTLHKDDFHNPNFVTTA 428

Query: 426 TKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGR 485
              PREPWHDLH ++DGPAAYDVL NFE+RW KA+K   +  K K  S   DD L++I R
Sbjct: 429 DDGPREPWHDLHSKIDGPAAYDVLANFEERWMKASKPRGIG-KLKSSS---DDSLLRIDR 484

Query: 486 ISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPK 540
           I  I+    +   N                ++DPE+WHVQ+FRSIDS SVKGFPK
Sbjct: 485 IPDIVGLSEASSAN----------------DNDPESWHVQVFRSIDSSSVKGFPK 523

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|O23078|PLDB2_ARATH Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=3

 Score =  486 bits (1252), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/532 (47%), Positives = 329/532 (61%), Gaps = 46/532 (8%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
           KV+ LHG+LD+ +  A  LPN+D+  + L   F                        T+ 
Sbjct: 111 KVLLLHGNLDIWVSCANNLPNLDLFHKTLGVVFGGM---------------------TNM 149

Query: 71  IIRK-SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
           I  + SK ITSDPYV++ V  A + RT V+ NS+ PVW +HF +P+AH  + +   VKD 
Sbjct: 150 IEGQLSKKITSDPYVSISVAGAVIGRTYVISNSENPVWQQHFYVPVAHHAAEVHFVVKDS 209

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           D  G+Q+IG   IP   I +G  I   Y I   +G P KPGA++ L +++T  +K  +Y 
Sbjct: 210 DAVGSQLIGIVTIPVEQIYSGARIEGTYSIRDSNGKPCKPGATLSLSIQYTSMNKLSVYH 269

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            G+   P ++GV   YFPLR+G  V LYQDAHV EG+LP I L  G  Y+ G CW D+ H
Sbjct: 270 SGVGAGPYYQGVPGTYFPLREGGSVTLYQDAHVPEGMLPGIKLGNGMCYEHGKCWHDMFH 329

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AI +A  LIYI GWSV+H ++L+R++  P     +  LGELL+ KS+EGVRVLLLVWDD 
Sbjct: 330 AICQARRLIYITGWSVWHNVRLVRDKEDP---SSECRLGELLRSKSQEGVRVLLLVWDDP 386

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQK 369
           TS + LG  T GVM THDEET++FFK SSV  +L PR A  + S+ KQ+ VGTI+THHQK
Sbjct: 387 TSQNILGYMTDGVMGTHDEETRRFFKDSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQK 446

Query: 370 CVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKA- 428
            ++VD  A GN RKI AF+GG+DLCDGRYDTP+H LFR L T    D+HNPT+       
Sbjct: 447 NLIVDADAGGNRRKIVAFVGGLDLCDGRYDTPQHPLFRTLQTDHNGDYHNPTFTGNVSGC 506

Query: 429 PREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISW 488
           PREPWHDLH ++DGPAAYDVL NFE+RW KA K      +  ++    DD L++I RI  
Sbjct: 507 PREPWHDLHSKIDGPAAYDVLTNFEERWLKAAK----PHRINKLKTSYDDALLRIDRI-- 560

Query: 489 ILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPK 540
              P++    +  T+             +DPE WHVQIFRSIDS SVKGFPK
Sbjct: 561 ---PDILRVLDAPTV-----------SANDPEAWHVQIFRSIDSNSVKGFPK 598

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine or N-acylphosphatidylethanolamine as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|Q9T052|PLDG3_ARATH Phospholipase D gamma 3 OS=Arabidopsis thaliana GN=PLDGAMMA3 PE=2 SV=1

 Score =  479 bits (1233), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/536 (46%), Positives = 324/536 (60%), Gaps = 43/536 (8%)

Query: 7   SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHL-RRCFTACDVCKTPAPTHETFQDDDGV 65
           S   +V  LHG+LD+ +  A+ LPNMD     L    F                    G 
Sbjct: 36  SGSLRVELLHGNLDIWVKEAKHLPNMDGFHNTLVGGMFFGL-----------------GR 78

Query: 66  RHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQ 125
           R+       S  ITSDPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   
Sbjct: 79  RNHKVDGENSSKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAKVHFV 138

Query: 126 VKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185
           VKD D+ G+QIIG   IP   + +G  I   + I+   G P K GA + L +++ P ++ 
Sbjct: 139 VKDSDIIGSQIIGAVEIPTEQLCSGNRIEGLFPILNSRGKPCKQGAVLSLSIQYIPMERM 198

Query: 186 PLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245
            LY++G+    E  GV   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWE
Sbjct: 199 RLYQKGVGFGVECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWE 258

Query: 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305
           D+  AI  A  LIYI GWSVFH ++L+R    P       TLGELLK KS+EGVRVL+LV
Sbjct: 259 DMADAIRRARRLIYITGWSVFHPVRLVRRNNDPT----QGTLGELLKVKSQEGVRVLVLV 314

Query: 306 WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFT 365
           WDD TS   LG  T G+M T DEET++FFKHSSV  +L PRY     S+ K+  V TI+T
Sbjct: 315 WDDPTSRSLLGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYT 374

Query: 366 HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY-PI 424
           HHQK ++VD +A+ N RKI AF+GG+DLC+GR+DTP+H LFR L T+ KDDFHNP +   
Sbjct: 375 HHQKTMIVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTIHKDDFHNPNFVTT 434

Query: 425 GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG 484
               PREPWHDLH ++DGPAAYDVL NFE+RW KA+K   +     R+    DD L+++ 
Sbjct: 435 ADDGPREPWHDLHSKIDGPAAYDVLANFEERWMKASKPRGI----GRLRTSSDDSLLRLD 490

Query: 485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPK 540
           RI  I+    +   N                ++DPE+WHVQ+FRSIDS SVKGFPK
Sbjct: 491 RIPDIMGLSEASSAN----------------DNDPESWHVQVFRSIDSSSVKGFPK 530

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|Q9T051|PLDG2_ARATH Phospholipase D gamma 2 OS=Arabidopsis thaliana GN=PLDGAMMA2 PE=1 SV=3

 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/538 (45%), Positives = 328/538 (60%), Gaps = 49/538 (9%)

Query: 12  VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKI 71
           V  LHG+LD+ +  A+ LPNM      L    +  ++ +         +  DG       
Sbjct: 31  VELLHGNLDIWVKEAKHLPNMICYRNKLVGGISFSELGRR-------IRKVDG------- 76

Query: 72  IRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV 131
             KS   TSDPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   VKD+D 
Sbjct: 77  -EKSSKFTSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDNDP 135

Query: 132 FGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQG 191
            G++IIG   IP   + +G  I   + I+  SG P + GA + L +++TP ++  LY++G
Sbjct: 136 IGSKIIGVVGIPTKQLCSGNRIEGLFPILNSSGKPCRKGAMLSLSIQYTPMERMRLYQKG 195

Query: 192 IAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAI 251
           +    E  GV   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED+  AI
Sbjct: 196 VGSGVECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAI 255

Query: 252 SEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTS 311
             A  LIYI GWSVFH ++L+R    P     + TLGELLK KS+EGVRVL+LVWDD TS
Sbjct: 256 RRARRLIYITGWSVFHPVRLVRRNNDPT----EGTLGELLKVKSQEGVRVLVLVWDDPTS 311

Query: 312 HDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCV 371
               G  T G+M T DEET++FFKHSSV  +L PRY     S+ K+  V TI+THHQK +
Sbjct: 312 MSFPGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTM 371

Query: 372 LVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTK--AP 429
           +VD +A+ N RKI AF+GG+DLC+GR+DTP+H LF  L T+ KDDFHNP + + T+   P
Sbjct: 372 IVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHSLFGTLKTLHKDDFHNPNF-VTTEDVGP 430

Query: 430 REPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR---DDYLIKIGRI 486
           REPWHDLH ++DGPAAYDVL NFE+RW        +  K + +   R   DD L++I RI
Sbjct: 431 REPWHDLHSKIDGPAAYDVLANFEERW--------MASKPRGIGKGRTSFDDSLLRINRI 482

Query: 487 SWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIED 544
             I+    +   N                ++DPE+WHVQ+FRSIDS SVKGFPK  E+
Sbjct: 483 PDIMGLSEASSAN----------------DNDPESWHVQVFRSIDSTSVKGFPKDPEE 524

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|P93400|PLDA1_TOBAC Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2

 Score =  399 bits (1024), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/469 (46%), Positives = 285/469 (60%), Gaps = 43/469 (9%)

Query: 83  YVTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
           Y TV + +A V RTR +KN    P W E F+I  AH  SN+   VKDD+  GA +IG A 
Sbjct: 50  YATVDLEKARVGRTRKIKNEPNNPRWYESFHIYCAHMASNVIFTVKDDNPIGATLIGRAY 109

Query: 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
           +P   +  GE I +W +I+    +P   G+ I ++L+F    ++P + +GI    ++ GV
Sbjct: 110 VPVEELLEGEEIDKWVEILDREMNPIAEGSKIHVKLQFFDVSRDPNWERGIRSS-KYPGV 168

Query: 202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
              +F  R G  V LYQDAHV +  +P+IPL GGK Y+P  CWEDI  AI  A HLIYI 
Sbjct: 169 PYTFFAQRTGCRVSLYQDAHVPDNFIPKIPLSGGKYYEPHRCWEDIFDAIINAKHLIYIT 228

Query: 262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
           GWSV+ +I L+R+  R  P GGD+TLGELLK K+ EGV+VL+LVWDD+TS   L  K  G
Sbjct: 229 GWSVYTEITLVRDSRRQKP-GGDITLGELLKKKASEGVKVLMLVWDDRTSVGLL--KKDG 285

Query: 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ---AS 378
           +MATHD+ET++FF+ + VNCVL PR      S  +   +GT+FTHHQK V+VD++     
Sbjct: 286 LMATHDQETEQFFQGTEVNCVLCPRNPDDGGSIVQSLQIGTMFTHHQKIVVVDSELPSGE 345

Query: 379 GNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGT---KAPREPWHD 435
              R+I +F+GGIDLCDGRYDTP H LFR LDT   DDFH P +P G      PREPWHD
Sbjct: 346 SEKRRILSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPDGAITKGGPREPWHD 405

Query: 436 LHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELS 495
           +H RL+GP A+DVL NFEQRWRK     ++   F+ +    DD +I         SP + 
Sbjct: 406 IHSRLEGPIAWDVLFNFEQRWRKQGG-KDVLVNFREL----DDIIIP-------PSPVMH 453

Query: 496 LKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIED 544
           L                    DD E W+VQ+FRSID G+  GFP++ ED
Sbjct: 454 L--------------------DDSETWNVQLFRSIDEGAAFGFPETPED 482

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes.

Nicotiana tabacum (taxid: 4097)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|Q41142|PLDA1_RICCO Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/473 (45%), Positives = 284/473 (60%), Gaps = 43/473 (9%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQ-EPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQII 137
            S  Y T+ + +A V RTR+L+N Q  P W E F++  AH  SN+   VKDD+  GA +I
Sbjct: 46  VSKLYATIDLEKARVGRTRILENEQSNPRWYESFHVYCAHQASNVIFTVKDDNPIGATLI 105

Query: 138 GTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPE 197
           G A +P   +  GE I RW +I+    +P   G+ I ++L++    K+  + QGI    +
Sbjct: 106 GRAYVPVEELLDGEEIDRWVEILDEDKNPVHSGSKIHVKLQYFEVTKDRNWGQGIRSS-K 164

Query: 198 HKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHL 257
           + GV   YF  R+G  V LYQDAH+ +  +P+IPL GG  Y+P  CWED+  AI+ A HL
Sbjct: 165 YPGVPYTYFSQRQGCKVSLYQDAHIPDKFVPQIPLAGGNYYEPHRCWEDVFDAITNAKHL 224

Query: 258 IYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317
           IYI GWSV+ +I LIR+  RP P GGD+TLGELLK K+ EGVRVL+LVWDD+TS   L  
Sbjct: 225 IYITGWSVYTEISLIRDSRRPKP-GGDITLGELLKKKASEGVRVLMLVWDDRTSVGLL-- 281

Query: 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDT-- 375
           K  G+MATHDEET+ FF+++ V+CVL PR      S+ +   + T+FTHHQK V+VD+  
Sbjct: 282 KKDGLMATHDEETEHFFQNTDVHCVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDSAM 341

Query: 376 -QASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYP---IGTKAPRE 431
                  R+I +F+GG+DLCDGRYD+P H LFR LD+   DDFH P +    I    PRE
Sbjct: 342 PNGDSQRRRIVSFVGGLDLCDGRYDSPFHSLFRTLDSAHHDDFHQPNFAGASIEKGGPRE 401

Query: 432 PWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILS 491
           PWHD+H RL+GP A+DVL NFEQRWRK                   D LI++  +  ++ 
Sbjct: 402 PWHDIHSRLEGPIAWDVLFNFEQRWRKQGG---------------KDLLIQLRELEDVII 446

Query: 492 PELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIED 544
           P                    V   DD E W+VQ+FRSID G+  GFP++ ED
Sbjct: 447 PPSP-----------------VMYPDDFEAWNVQLFRSIDGGAAFGFPETPED 482

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence.

Ricinus communis (taxid: 3988)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|P86387|PLDA1_CARPA Phospholipase D alpha 1 OS=Carica papaya GN=PLD1 PE=1 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/469 (44%), Positives = 285/469 (60%), Gaps = 43/469 (9%)

Query: 83  YVTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
           Y T+ + +A V RTR++K+    P W E F+I  AH  SN+   VKDD+  GA +IG A 
Sbjct: 50  YATIDLERARVGRTRIIKDEPNNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAY 109

Query: 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
           +P   +  G+ + RW +I+    +P +  + I ++L+F    K+  +  GI G   + GV
Sbjct: 110 VPVEELIRGDQVDRWVEILDEDKNPIEGDSKIHVKLQFFDVKKDSNWNMGIKG-ARYLGV 168

Query: 202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
              ++  R+G  V LYQDAHV +G +P+IPL GGK Y+P  CWED+  AI+ A HLIYI 
Sbjct: 169 PYTFYSQRRGCRVSLYQDAHVPDGFIPKIPLAGGKYYEPHRCWEDVFDAITNARHLIYIT 228

Query: 262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
           GWSV+ +I LIR+  RP P GGD+TLGELLK K+ EGV+VL+LVWDD+TS   L  K  G
Sbjct: 229 GWSVYTEITLIRDSRRPKP-GGDVTLGELLKQKASEGVKVLMLVWDDRTSVGLL--KKDG 285

Query: 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA-SGN 380
           +MATHDEET  +F+++ V+CVL PR      S+ +   + T+FTHHQK V+VD +  SG 
Sbjct: 286 LMATHDEETANYFQNTDVHCVLCPRNPDDGGSFVQGLQISTMFTHHQKIVVVDGEMPSGE 345

Query: 381 N--RKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYP---IGTKAPREPWHD 435
           +  R+I +F+GGIDLCDGRYDTP H LFR LDT   DDFH P +    I    PREPWHD
Sbjct: 346 SQMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFAGSSITKGGPREPWHD 405

Query: 436 LHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELS 495
           +H RL+GP A+DVL NFEQRWR+                   D L+ +  +  I+ P   
Sbjct: 406 IHSRLEGPVAWDVLFNFEQRWRQQGG---------------KDVLVNLRELDNIIIPP-- 448

Query: 496 LKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIED 544
                  + P           DD E W+VQ+FRSID G+  GFP++ E+
Sbjct: 449 ----SPVMFP-----------DDHETWNVQLFRSIDGGAAFGFPETPEE 482

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes.

Carica papaya (taxid: 3649)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

>sp|Q38882|PLDA1_ARATH Phospholipase D alpha 1 OS=Arabidopsis thaliana GN=PLDALPHA1 PE=1 SV=2

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/469 (45%), Positives = 284/469 (60%), Gaps = 44/469 (9%)

Query: 83  YVTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
           Y T+ + +A V RTR +KN  + P W E F+I  AH  S++   VKDD+  GA +IG A 
Sbjct: 51  YATIDLQKARVGRTRKIKNEPKNPKWYESFHIYCAHLASDIIFTVKDDNPIGATLIGRAY 110

Query: 142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
           IP   +  GE + +W +I+    +P + G+ I ++L++   +++  +  GI    +  GV
Sbjct: 111 IPVDQVINGEEVDQWVEILDNDRNPIQGGSKIHVKLQYFHVEEDRNWNMGIKS-AKFPGV 169

Query: 202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
              +F  R+G  V LYQDAH+ +  +P IPL GGK Y+P  CWEDI  AIS A HLIYI 
Sbjct: 170 PYTFFSQRQGCKVSLYQDAHIPDNFVPRIPLAGGKNYEPQRCWEDIFDAISNAKHLIYIT 229

Query: 262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
           GWSV+ +I L+R+  RP P GGD+T+GELLK K+ EGVRVLLLVWDD+TS D L  K  G
Sbjct: 230 GWSVYAEIALVRDSRRPKP-GGDVTIGELLKKKASEGVRVLLLVWDDRTSVDVL--KKDG 286

Query: 322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ----A 377
           +MATHDEET+ FF+ S V+C+L PR      S  +   + T+FTHHQK V+VD++     
Sbjct: 287 LMATHDEETENFFRGSDVHCILCPRNPDDGGSIVQSLQISTMFTHHQKIVVVDSEMPSRG 346

Query: 378 SGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY---PIGTKAPREPWH 434
               R+I +F+GGIDLCDGRYDTP H LFR LDTV  DDFH P +    I    PREPWH
Sbjct: 347 GSEMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTVHHDDFHQPNFTGAAITKGGPREPWH 406

Query: 435 DLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPEL 494
           D+H RL+GP A+DV+ NFEQRW K                   D L+K+  +S I+    
Sbjct: 407 DIHSRLEGPIAWDVMYNFEQRWSKQGG---------------KDILVKLRDLSDII---- 447

Query: 495 SLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIE 543
                   I P       V  ++D + W+VQ+FRSID G+  GFP+S E
Sbjct: 448 --------ITPSP-----VMFQEDHDVWNVQLFRSIDGGAAAGFPESPE 483

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action and response to stress, characterized by acidification of the cell.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	551
333595913	865	phospholipase D delta [Dimocarpus longan	0.976	0.621	0.750	0.0
338795736	865	phospholipase D delta [Litchi chinensis]	0.974	0.620	0.747	0.0
312283027	860	unnamed protein product [Thellungiella h	0.978	0.626	0.724	0.0
297798338	869	atplddelta [Arabidopsis lyrata subsp. ly	0.974	0.617	0.716	0.0
23477711	849	phospholipase D delta isoform [Gossypium	0.963	0.625	0.721	0.0
22795060	849	phospholipase D delta isoform 1b [Gossyp	0.958	0.621	0.725	0.0
359496145	872	PREDICTED: phospholipase D delta-like [V	0.985	0.622	0.692	0.0
30690488	857	phospholipase D delta [Arabidopsis thali	0.974	0.626	0.717	0.0
296084063	1607	unnamed protein product [Vitis vinifera]	0.970	0.332	0.696	0.0
30690492	693	phospholipase D delta [Arabidopsis thali	0.974	0.774	0.717	0.0

>gi|333595913|gb|AEF58504.1| phospholipase D delta [Dimocarpus longan]

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/542 (75%), Positives = 452/542 (83%), Gaps = 4/542 (0%)

Query: 2   AAGDD-SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQ 60
           AAG+D S K +VIYLHGDLDLKII ARRLPNMD+++  LRRCFTACD C TP        
Sbjct: 3   AAGEDKSVKGQVIYLHGDLDLKIIGARRLPNMDVVANSLRRCFTACDAC-TPPQPSSRSP 61

Query: 61  DDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLS 120
             DG  +  K  RK  IIT+DPYVTVVVPQATVARTRVLKN+Q P W+EHF IPLAHP+ 
Sbjct: 62  SIDGDGYDKKSHRK--IITTDPYVTVVVPQATVARTRVLKNTQSPHWDEHFVIPLAHPVV 119

Query: 121 NLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180
           ++E QVKDDDVFGA++IG A IPA  IA GE IS W+ II   G PPK  ++I+LE+KFT
Sbjct: 120 DVEFQVKDDDVFGAELIGMAKIPASKIAAGEHISGWFPIINAKGQPPKLDSAIRLEMKFT 179

Query: 181 PCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKP 240
           PC++NPLYR G+AGDPE  GVR  YFPLRKG  ++LYQDAHV  G LPE+ L+G   Y  
Sbjct: 180 PCEENPLYRHGVAGDPEQSGVRRTYFPLRKGCQLKLYQDAHVKPGQLPEVKLNGHVDYTA 239

Query: 241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVR 300
           GTCWEDIC+AISEAHHL+YIVGWSVF+KIKLIRE TR LPRGGDLTLGELLKYKSEEGVR
Sbjct: 240 GTCWEDICYAISEAHHLVYIVGWSVFYKIKLIREPTRELPRGGDLTLGELLKYKSEEGVR 299

Query: 301 VLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIV 360
           +LLLVWDDKTSHDK G+KT GVM THDEET K+FKHSSVNCVLAPRYASSKL  FKQQ+V
Sbjct: 300 ILLLVWDDKTSHDKFGIKTGGVMGTHDEETLKYFKHSSVNCVLAPRYASSKLGIFKQQVV 359

Query: 361 GTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNP 420
           GT+FTHHQKCVLVDTQA GNNRKITAFIGGIDLCDGRYDTPEHRLFRDL+T+F+ DFHNP
Sbjct: 360 GTMFTHHQKCVLVDTQAFGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLNTIFEGDFHNP 419

Query: 421 TYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYL 480
           TYP   KAPR+PW DLHCR+DGPAAYDVLINFEQRWRK+TK  E + KFK+VSHW DD L
Sbjct: 420 TYPSTVKAPRQPWRDLHCRIDGPAAYDVLINFEQRWRKSTKWKEFSLKFKKVSHWHDDSL 479

Query: 481 IKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPK 540
           IKI RISWILSPELS    GTTIVP DD +VRVS E +PENWHVQ+FRSIDSGSVKGFPK
Sbjct: 480 IKIERISWILSPELSSTREGTTIVPTDDRIVRVSDEKNPENWHVQVFRSIDSGSVKGFPK 539

Query: 541 SI 542
           SI
Sbjct: 540 SI 541

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338795736|gb|AEI99558.1| phospholipase D delta [Litchi chinensis]

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/543 (74%), Positives = 453/543 (83%), Gaps = 6/543 (1%)

Query: 2   AAGDD-SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQ 60
           AAG+D S K +  YLHGDLDLKII ARRLPNMD+++ + RRCFTACD C+ P P+     
Sbjct: 3   AAGEDKSVKGQGTYLHGDLDLKIIAARRLPNMDVVASNFRRCFTACDACRPPHPSSRPPS 62

Query: 61  -DDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL 119
              DG    S      KIIT+DPYVTVVVPQATVARTRVLKN+Q P W+EHF IPLAHP+
Sbjct: 63  VHGDGDNKKSH----HKIITTDPYVTVVVPQATVARTRVLKNTQSPHWDEHFVIPLAHPV 118

Query: 120 SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
            +LE QVKDDDVFGA++IG A IPA  IA G++IS W+ II   G PP+  A+I+LE+KF
Sbjct: 119 VDLEFQVKDDDVFGAELIGKAKIPASLIAAGDVISDWFPIINAKGQPPRLDAAIRLEMKF 178

Query: 180 TPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239
           TPC++NPLYR G+AGDPE  GVR  YFPLRKG  + LYQDAHV  G LPE+ LDG   YK
Sbjct: 179 TPCEENPLYRHGVAGDPEQSGVRRTYFPLRKGCQLTLYQDAHVKPGQLPEVKLDGHVDYK 238

Query: 240 PGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGV 299
             TCWEDIC+AISEAHHL+YIVGWSVF+KIKLIRE TR LPRGGDLTLGELLKYKSEEGV
Sbjct: 239 ADTCWEDICYAISEAHHLVYIVGWSVFYKIKLIREPTRQLPRGGDLTLGELLKYKSEEGV 298

Query: 300 RVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQI 359
           R+LLLVWDDKTSHDK GVKT GVM THDEET+KFFKHSSVNCVLAPRYASSKL  FKQQ+
Sbjct: 299 RILLLVWDDKTSHDKFGVKTGGVMGTHDEETRKFFKHSSVNCVLAPRYASSKLGIFKQQV 358

Query: 360 VGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHN 419
           VGT+FTHHQKCV+VDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDL+T+F+ DFHN
Sbjct: 359 VGTMFTHHQKCVIVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLNTIFEGDFHN 418

Query: 420 PTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDY 479
           PTYP   KAPR+PWHDLHCR+DGPAAYDVLINFEQRWRK+TK  E + KFK+VSHW DD 
Sbjct: 419 PTYPSTVKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKSTKWKEFSLKFKKVSHWHDDS 478

Query: 480 LIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFP 539
           LIKI RISWILSPELS    GTTIVP DD +VRVS E +PENWHVQ+FRSIDSGS+KGFP
Sbjct: 479 LIKIERISWILSPELSSTREGTTIVPTDDRIVRVSDEKNPENWHVQVFRSIDSGSLKGFP 538

Query: 540 KSI 542
           KSI
Sbjct: 539 KSI 541

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283027|dbj|BAJ34379.1| unnamed protein product [Thellungiella halophila]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/540 (72%), Positives = 452/540 (83%), Gaps = 1/540 (0%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           + V+ LHGDLDLKI++ARRLPNMDM SEH+RRCFT C+ C TP    +    D G +   
Sbjct: 7   DDVMLLHGDLDLKIVQARRLPNMDMFSEHMRRCFTVCNSCTTPTDDEDPRDRDGGAKSGD 66

Query: 70  KIIR-KSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD 128
           + IR   K+ITSDPYVTVVVPQAT+ARTRVLKN+Q+P+W+EHF I +AHPLS LE QVKD
Sbjct: 67  RNIRGHRKVITSDPYVTVVVPQATLARTRVLKNAQDPLWDEHFVISVAHPLSYLEFQVKD 126

Query: 129 DDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLY 188
           DDVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   ++ +++KFTP D+   Y
Sbjct: 127 DDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKKETALFIDMKFTPFDQIHTY 186

Query: 189 RQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDIC 248
           R GIAGDP+ KGV+  YFP+RKGS VRLYQDAHV +G+LPEI LD GK+Y+ G CWEDIC
Sbjct: 187 RTGIAGDPDRKGVKRTYFPVRKGSQVRLYQDAHVMDGMLPEIGLDNGKVYQHGKCWEDIC 246

Query: 249 HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDD 308
           +A+SEAHH+IYIVGWSVFHK+KL+RE TR LPRGGDLTLGELLKYKSEEGVRVLLLVWDD
Sbjct: 247 YAVSEAHHMIYIVGWSVFHKVKLVREPTRKLPRGGDLTLGELLKYKSEEGVRVLLLVWDD 306

Query: 309 KTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQ 368
           KTSHDK G+ T GVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ+VGT+FTHHQ
Sbjct: 307 KTSHDKFGISTAGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQVVGTLFTHHQ 366

Query: 369 KCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKA 428
           KCVLVDTQA GNNRK+TAFIGGIDLCDGRYDTPEHR+ RDLD+VFKDDFHNPT+P GTKA
Sbjct: 367 KCVLVDTQAVGNNRKVTAFIGGIDLCDGRYDTPEHRILRDLDSVFKDDFHNPTFPAGTKA 426

Query: 429 PREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISW 488
           PR+PWHDLHCRL+GPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD LI+IGRISW
Sbjct: 427 PRQPWHDLHCRLEGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIRIGRISW 486

Query: 489 ILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQ 548
           ILSP      +GT+IVP DD VV VSKEDDPENWHVQ+FRSIDSGSVKGFPK  ++ + Q
Sbjct: 487 ILSPVFKYLKDGTSIVPEDDPVVYVSKEDDPENWHVQVFRSIDSGSVKGFPKYEDEAEAQ 546

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798338|ref|XP_002867053.1| atplddelta [Arabidopsis lyrata subsp. lyrata] gi|297312889|gb|EFH43312.1| atplddelta [Arabidopsis lyrata subsp. lyrata]

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/551 (71%), Positives = 450/551 (81%), Gaps = 14/551 (2%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRVFTACNACARP--TDDVDPRDGGEVGDK 64

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQ+P+W+EHFNI +AHPL+ LE QVKDD
Sbjct: 65  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQDPLWDEHFNISVAHPLAYLEFQVKDD 124

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ I+  SG PPK   ++ +++KFTP D+   YR
Sbjct: 125 DVFGAQIIGTAKIPVRDIASGERISGWFPILGASGKPPKAETALFIDMKFTPFDQIHSYR 184

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDP+ KGV+  YFPLRKGS VRLYQDAHV +G+LPEI LD GK+Y+ G CWEDIC+
Sbjct: 185 CGIAGDPDRKGVKRTYFPLRKGSQVRLYQDAHVMDGMLPEIGLDNGKVYQHGKCWEDICY 244

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           A+SEAHH+IY+VGWSVFHKIKL+RE TR LPRGGDLTLGELLKYKSEEGVRVLLLVWDDK
Sbjct: 245 AVSEAHHMIYVVGWSVFHKIKLVREPTRKLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
           TSHDK G+ TPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct: 305 TSHDKFGISTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYMVM 364

Query: 359 -IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDF 417
            +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+ +DLDTVFKDDF
Sbjct: 365 TVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILKDLDTVFKDDF 424

Query: 418 HNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRD 477
           HNPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+D
Sbjct: 425 HNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQD 484

Query: 478 DYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKG 537
           D LI+IGRISWILSP      +GTTI+P DD  V VSKEDDPENWHVQIFRSIDSGSVKG
Sbjct: 485 DALIRIGRISWILSPVFKFLKDGTTIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKG 544

Query: 538 FPKSIEDIDDQ 548
           FPK  ++ + Q
Sbjct: 545 FPKYEDEAEAQ 555

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23477711|gb|AAN34820.1| phospholipase D delta isoform [Gossypium hirsutum]

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/539 (72%), Positives = 445/539 (82%), Gaps = 8/539 (1%)

Query: 13  IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKII 72
           IYLHGDLDL I+ ARRLPNMD M  HLR C T C+ CK+PA T     D       SKI 
Sbjct: 9   IYLHGDLDLTIVEARRLPNMDFMVNHLRSCLT-CEPCKSPAQTAAKEGD-------SKIR 60

Query: 73  RKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF 132
              KIITSDPYVTV +PQATVARTRVLKNSQ P WNEHF IPLAHP++ L+I VKD+D+F
Sbjct: 61  GHRKIITSDPYVTVCLPQATVARTRVLKNSQNPKWNEHFIIPLAHPVTELDINVKDNDLF 120

Query: 133 GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGI 192
           GA  IGTA IPA  IATGE I+ W+ +I PSG PPKP ++I L++KFTPC+ NPLY+QG+
Sbjct: 121 GADAIGTAKIPASRIATGEHITGWFPLIGPSGKPPKPDSAIYLDMKFTPCENNPLYKQGV 180

Query: 193 AGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAIS 252
           A DPE  GVR+ YFPLRKGS V LYQDAHVT+ +LP+I LD GK+Y P  CWEDIC+AIS
Sbjct: 181 ASDPEQAGVRHTYFPLRKGSQVTLYQDAHVTDDLLPKIELDDGKVYSPAKCWEDICYAIS 240

Query: 253 EAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH 312
           EAHHL+YIVGWSVFHK+KL+RE TRP PRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH
Sbjct: 241 EAHHLVYIVGWSVFHKVKLVREPTRPFPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH 300

Query: 313 DKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVL 372
           DK G++T GVM THDEET KFFKHSSV CVLAPRYASSKL YFKQQ+VGT+FTHHQKCVL
Sbjct: 301 DKFGIRTAGVMQTHDEETLKFFKHSSVTCVLAPRYASSKLGYFKQQVVGTMFTHHQKCVL 360

Query: 373 VDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREP 432
           VDTQA+GNNRKITAF+GGIDLCDGRYDTPEHR+ RDLDTVFKDDFHNPT+P+GT APR+P
Sbjct: 361 VDTQAAGNNRKITAFVGGIDLCDGRYDTPEHRILRDLDTVFKDDFHNPTFPVGTMAPRQP 420

Query: 433 WHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSP 492
           WHDLH +++GPAAYDVLINFEQRWRK+TK  E +  FK  SHW DD +I+I RISWI SP
Sbjct: 421 WHDLHSKIEGPAAYDVLINFEQRWRKSTKWKEFSLLFKGKSHWSDDAMIRIERISWIQSP 480

Query: 493 ELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQVYM 551
            L++  +GTTIVP DD  V V  +D+ ENW+VQIFRSIDSGS+KGFPK I+  ++Q + 
Sbjct: 481 PLAVTDDGTTIVPDDDPKVHVLSKDNRENWNVQIFRSIDSGSLKGFPKYIKKAENQNFF 539

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22795060|gb|AAN05432.1| phospholipase D delta isoform 1b [Gossypium hirsutum]

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/536 (72%), Positives = 444/536 (82%), Gaps = 8/536 (1%)

Query: 13  IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKII 72
           IYLHGDLDL I+ ARRLPNMD M  HLR C T C+ CK+PA T     D       SKI 
Sbjct: 9   IYLHGDLDLTIVEARRLPNMDFMVNHLRSCLT-CEPCKSPAQTAAKEGD-------SKIR 60

Query: 73  RKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF 132
              KIITSDPYVTV +PQATVARTRVLKNSQ P WNEHF IPLAHP++ L+I VKD+D+F
Sbjct: 61  GHRKIITSDPYVTVCLPQATVARTRVLKNSQNPKWNEHFIIPLAHPVTELDINVKDNDLF 120

Query: 133 GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGI 192
           GA  IGTA IPA  IATGE I+ W+ +I PSG PPKP ++I L++KFTPC+ NPLY+QG+
Sbjct: 121 GADAIGTAKIPASRIATGEHITGWFPLIGPSGKPPKPDSAIYLDMKFTPCENNPLYKQGV 180

Query: 193 AGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAIS 252
           A DPE  GVR+ YFPLRKGS V LYQDAHVT+ +LP+I LD GK+Y P  CWEDIC+AIS
Sbjct: 181 ASDPEQAGVRHTYFPLRKGSQVTLYQDAHVTDDLLPKIELDDGKVYSPAKCWEDICYAIS 240

Query: 253 EAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH 312
           EAHHL+YIVGWSVFHK+KL+RE TRP PRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH
Sbjct: 241 EAHHLVYIVGWSVFHKVKLVREPTRPFPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSH 300

Query: 313 DKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVL 372
           DK G++T GVM THDEET KFFKHSSV CVLAPRYASSKL YFKQQ+VGT+FTHHQKCVL
Sbjct: 301 DKFGIRTAGVMQTHDEETLKFFKHSSVTCVLAPRYASSKLGYFKQQVVGTMFTHHQKCVL 360

Query: 373 VDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREP 432
           VDTQA+GNNRKITAF+GGIDLCDGRYDTPEHR+ RDLDTVFKDDFHNPT+P+GT APR+P
Sbjct: 361 VDTQAAGNNRKITAFVGGIDLCDGRYDTPEHRILRDLDTVFKDDFHNPTFPVGTMAPRQP 420

Query: 433 WHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSP 492
           WHDLH +++GPAAYDVLINFEQRWRK+TK  E +  FK  SHW DD +I+I RISWI SP
Sbjct: 421 WHDLHSKIEGPAAYDVLINFEQRWRKSTKWKEFSLLFKGKSHWSDDAMIRIERISWIQSP 480

Query: 493 ELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQ 548
            L++  +GTTIVP DD  V V  +D+ ENW+VQIFRSIDSGS+KGFPK I+  ++Q
Sbjct: 481 PLAVTDDGTTIVPDDDPKVHVLSKDNRENWNVQIFRSIDSGSLKGFPKYIKKAENQ 536

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496145|ref|XP_002270350.2| PREDICTED: phospholipase D delta-like [Vitis vinifera]

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/549 (69%), Positives = 455/549 (82%), Gaps = 6/549 (1%)

Query: 6   DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQ---DD 62
           D+  ++VIYLHGDLDLKI++AR LPNMD+++EH+RRCFT CD CKTP+   +      DD
Sbjct: 3   DTASQRVIYLHGDLDLKILKARDLPNMDLVTEHVRRCFTLCDACKTPSAGKDVSTPDTDD 62

Query: 63  DGVRHT---SKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL 119
              RH     ++    KIITSDPYVTV VPQATVARTRV+ N+Q P WNE+F I LAHP+
Sbjct: 63  RPARHKPGDKRLDHHRKIITSDPYVTVCVPQATVARTRVISNTQNPYWNENFYISLAHPV 122

Query: 120 SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
           +NLE QVKD+D+FGA++IG A IPA  IATGE IS W+ +I  +G  PKP  ++Q+E+KF
Sbjct: 123 ANLEFQVKDNDLFGAEVIGVARIPAERIATGEHISGWFPVIGANGKQPKPTTALQIEIKF 182

Query: 180 TPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239
           TP ++NP YR GIAGDPEH GVR+ YFPLRKG    LYQDAHV EG+LP+I +DGG++Y+
Sbjct: 183 TPFEQNPFYRTGIAGDPEHLGVRHTYFPLRKGGLATLYQDAHVPEGLLPDIEVDGGQVYR 242

Query: 240 PGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGV 299
             TCWEDICHAI EAHH++YIVGWS++HK+KLIRE TRPLPRGGDLTLG+LLKYKSEEGV
Sbjct: 243 HETCWEDICHAIVEAHHMVYIVGWSIYHKVKLIREPTRPLPRGGDLTLGDLLKYKSEEGV 302

Query: 300 RVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQI 359
           RVL+LVWDD+TSHDK  + T GVM THDEET+KFFKHSSV CVL+PRYASSKLS+ KQQ+
Sbjct: 303 RVLMLVWDDRTSHDKFFINTKGVMETHDEETRKFFKHSSVICVLSPRYASSKLSFIKQQV 362

Query: 360 VGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHN 419
           VGTIFTHHQKCVLVD+QA GNNRKITAF+GGIDLCDGRYDTPEHRLF+DLDTVF +DFHN
Sbjct: 363 VGTIFTHHQKCVLVDSQAHGNNRKITAFLGGIDLCDGRYDTPEHRLFKDLDTVFNEDFHN 422

Query: 420 PTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDY 479
           PT+P G+KAPR+PWHDLHC+++GPAAYDVLINFEQRW+KATK TE     K++SHW DD 
Sbjct: 423 PTFPAGSKAPRQPWHDLHCKIEGPAAYDVLINFEQRWKKATKWTEFGLHLKKISHWHDDA 482

Query: 480 LIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFP 539
           LIKI RISWILSP      +  T VP+DD  + V+KEDDPENWHVQ+FRSIDSGS+KGFP
Sbjct: 483 LIKIDRISWILSPPSGSDGDDVTSVPKDDPSLWVTKEDDPENWHVQVFRSIDSGSLKGFP 542

Query: 540 KSIEDIDDQ 548
           K+++  ++Q
Sbjct: 543 KTVDTAENQ 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690488|ref|NP_849501.1| phospholipase D delta [Arabidopsis thaliana] gi|12484119|gb|AAG53975.1|AF322228_1 phospholipase D delta [Arabidopsis thaliana] gi|15987418|gb|AAL11978.1|AF306345_1 phospholipase D [Arabidopsis thaliana] gi|110742679|dbj|BAE99251.1| phospholipase D [Arabidopsis thaliana] gi|332661171|gb|AEE86571.1| phospholipase D delta [Arabidopsis thaliana]

 Score =  817 bits (2111), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/539 (71%), Positives = 442/539 (82%), Gaps = 2/539 (0%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQK 369
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ+VGT+FTHHQK
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQVVGTLFTHHQK 364

Query: 370 CVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAP 429
           CVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFHNPT+P GTKAP
Sbjct: 365 CVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAP 424

Query: 430 REPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWI 489
           R+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD LI+IGRISWI
Sbjct: 425 RQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIRIGRISWI 484

Query: 490 LSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQ 548
           LSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGFPK  ++ + Q
Sbjct: 485 LSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQ 543

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084063|emb|CBI24451.3| unnamed protein product [Vitis vinifera]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/543 (69%), Positives = 453/543 (83%), Gaps = 8/543 (1%)

Query: 6    DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGV 65
            D+  ++VIYLHGDLDLKI++AR LPNMD+++EH+RRCFT CD CKTP+        D G 
Sbjct: 675  DTASQRVIYLHGDLDLKILKARDLPNMDLVTEHVRRCFTLCDACKTPSAG-----KDPGD 729

Query: 66   RHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQ 125
            +   ++    KIITSDPYVTV VPQATVARTRV+ N+Q P WNE+F I LAHP++NLE Q
Sbjct: 730  K---RLDHHRKIITSDPYVTVCVPQATVARTRVISNTQNPYWNENFYISLAHPVANLEFQ 786

Query: 126  VKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN 185
            VKD+D+FGA++IG A IPA  IATGE IS W+ +I  +G  PKP  ++Q+E+KFTP ++N
Sbjct: 787  VKDNDLFGAEVIGVARIPAERIATGEHISGWFPVIGANGKQPKPTTALQIEIKFTPFEQN 846

Query: 186  PLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE 245
            P YR GIAGDPEH GVR+ YFPLRKG    LYQDAHV EG+LP+I +DGG++Y+  TCWE
Sbjct: 847  PFYRTGIAGDPEHLGVRHTYFPLRKGGLATLYQDAHVPEGLLPDIEVDGGQVYRHETCWE 906

Query: 246  DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305
            DICHAI EAHH++YIVGWS++HK+KLIRE TRPLPRGGDLTLG+LLKYKSEEGVRVL+LV
Sbjct: 907  DICHAIVEAHHMVYIVGWSIYHKVKLIREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMLV 966

Query: 306  WDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFT 365
            WDD+TSHDK  + T GVM THDEET+KFFKHSSV CVL+PRYASSKLS+ KQQ+VGTIFT
Sbjct: 967  WDDRTSHDKFFINTKGVMETHDEETRKFFKHSSVICVLSPRYASSKLSFIKQQVVGTIFT 1026

Query: 366  HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG 425
            HHQKCVLVD+QA GNNRKITAF+GGIDLCDGRYDTPEHRLF+DLDTVF +DFHNPT+P G
Sbjct: 1027 HHQKCVLVDSQAHGNNRKITAFLGGIDLCDGRYDTPEHRLFKDLDTVFNEDFHNPTFPAG 1086

Query: 426  TKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGR 485
            +KAPR+PWHDLHC+++GPAAYDVLINFEQRW+KATK TE     K++SHW DD LIKI R
Sbjct: 1087 SKAPRQPWHDLHCKIEGPAAYDVLINFEQRWKKATKWTEFGLHLKKISHWHDDALIKIDR 1146

Query: 486  ISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDI 545
            ISWILSP      +  T VP+DD  + V+KEDDPENWHVQ+FRSIDSGS+KGFPK+++  
Sbjct: 1147 ISWILSPPSGSDGDDVTSVPKDDPSLWVTKEDDPENWHVQVFRSIDSGSLKGFPKTVDTA 1206

Query: 546  DDQ 548
            ++Q
Sbjct: 1207 ENQ 1209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690492|ref|NP_849502.1| phospholipase D delta [Arabidopsis thaliana] gi|332661170|gb|AEE86570.1| phospholipase D delta [Arabidopsis thaliana]

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/539 (71%), Positives = 442/539 (82%), Gaps = 2/539 (0%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQK 369
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ+VGT+FTHHQK
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQVVGTLFTHHQK 364

Query: 370 CVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAP 429
           CVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFHNPT+P GTKAP
Sbjct: 365 CVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAP 424

Query: 430 REPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWI 489
           R+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD LI+IGRISWI
Sbjct: 425 RQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDALIRIGRISWI 484

Query: 490 LSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQ 548
           LSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGFPK  ++ + Q
Sbjct: 485 LSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQ 543

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	551
TAIR|locus:2125314	868	PLDDELTA "phospholipase D delt	0.974	0.618	0.685	1.5e-207
TAIR|locus:2064607	1083	PLDBETA1 "phospholipase D beta	0.776	0.395	0.525	1e-135
TAIR|locus:2137045	858	PLDGAMMA1 "phospholipase D gam	0.722	0.463	0.513	1.7e-125
TAIR|locus:2126001	927	PLDBETA2 "phospholipase D beta	0.731	0.434	0.506	2.5e-124
TAIR|locus:2137035	866	PLDGAMMA3 "phospholipase D gam	0.729	0.464	0.496	1.7e-123
TAIR|locus:2137025	856	PLDGAMMA2 "phospholipase D gam	0.818	0.526	0.456	4.7e-116
UNIPROTKB|P86387	808	PLD1 "Phospholipase D alpha 1"	0.675	0.460	0.490	3.6e-103
TAIR|locus:2093227	810	PLDALPHA1 "phospholipase D alp	0.675	0.459	0.489	9.6e-101
TAIR|locus:2035211	810	PLDALPHA2 "phospholipase D alp	0.675	0.459	0.477	1.2e-98
TAIR|locus:2145452	820	PLDALPHA3 "phospholipase D alp	0.667	0.448	0.465	6.9e-94

TAIR|locus:2125314 PLDDELTA "phospholipase D delta" [Arabidopsis thaliana (taxid:3702)]

 Score = 2007 (711.6 bits), Expect = 1.5e-207, P = 1.5e-207
 Identities = 377/550 (68%), Positives = 429/550 (78%)

Query:    10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHXX 69
             E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct:     7 EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query:    70 XXXXXXXXXXXDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
                        DPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct:    67 NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query:   130 DVFGAQIIGTAAIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYR 189
             DVFGAQIIGTA IP   IA+GE IS W+                 +++KFTP D+   YR
Sbjct:   127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query:   190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
              GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct:   187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query:   250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
             AISEAHH+IYIVGWS+FHKIKL+RE T+ +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct:   247 AISEAHHMIYIVGWSIFHKIKLVRE-TK-VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query:   310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
             TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct:   305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPSSSIYIMT 364

Query:   359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFH 418
             +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFH
Sbjct:   365 VVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFH 424

Query:   419 NPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478
             NPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD
Sbjct:   425 NPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDD 484

Query:   479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF 538
              LI+IGRISWILSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGF
Sbjct:   485 ALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544

Query:   539 PKSIEDIDDQ 548
             PK  ++ + Q
Sbjct:   545 PKYEDEAEAQ 554

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IMP;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0046473 "phosphatidic acid metabolic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=IMP

GO:0009409 "response to cold" evidence=IEP;IMP

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

TAIR|locus:2064607 PLDBETA1 "phospholipase D beta 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1158 (412.7 bits), Expect = 1.0e-135, Sum P(3) = 1.0e-135
 Identities = 229/436 (52%), Positives = 283/436 (64%)

Query:    56 HETFQDDDGVRHXXXXXXXXXXXXXDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL 115
             H+T  D  G                DPYV+V V  A + RT V+ NS+ PVW +HF +P+
Sbjct:   292 HKTLGDMFGRLPGKIEGQLTSKITSDPYVSVSVAGAVIGRTYVMSNSENPVWMQHFYVPV 351

Query:   116 AHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQL 175
             AH  + +   VKD DV G+Q+IG   IP   I +G  I   Y                 L
Sbjct:   352 AHHAAEVHFVVKDSDVVGSQLIGLVTIPVEQIYSGAKIEGTYPILNSNGKPCKPGANLSL 411

Query:   176 ELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGG 235
              +++TP DK  +Y  G+   P+++GV   YFPLRKG  VRLYQDAHV EG+LP I LD G
Sbjct:   412 SIQYTPMDKLSVYHHGVGAGPDYQGVPGTYFPLRKGGTVRLYQDAHVPEGMLPGIRLDNG 471

Query:   236 KLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS 295
               Y+ G CW D+  AI +A  LIYI GWSV+HK+KLIR++  P     + TLGELL+ KS
Sbjct:   472 MSYEHGKCWHDMFDAIRQARRLIYITGWSVWHKVKLIRDKLGP---ASECTLGELLRSKS 528

Query:   296 EEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYF 355
             +EGVRVLLL+WDD TS   LG KT GVMATHDEET++FFKHSSV  +L PR A  + S+ 
Sbjct:   529 QEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRNAGKRHSWV 588

Query:   356 KQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKD 415
             KQ+ VGTI+THHQK V+VD  A GN RKI AF+GG+DLCDGRYDTP+H LFR L T+ KD
Sbjct:   589 KQREVGTIYTHHQKNVIVDADAGGNRRKIIAFVGGLDLCDGRYDTPQHPLFRTLQTIHKD 648

Query:   416 DFHNPTYPIGTKA-PREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 474
             DFHNPT+       PREPWHDLH ++DGPAAYDVL NFE+RW KA K + +  KFK  S+
Sbjct:   649 DFHNPTFTGNLSGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKAAKPSGIK-KFK-TSY 706

Query:   475 WRDDYLIKIGRISWIL 490
               DD L++I RI  IL
Sbjct:   707 --DDALLRIDRIPDIL 720

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

TAIR|locus:2137045 PLDGAMMA1 "phospholipase D gamma 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.7e-125, Sum P(3) = 1.7e-125
 Identities = 209/407 (51%), Positives = 265/407 (65%)

Query:    81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTA 140
             DPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   VKD D+ G+QI+G  
Sbjct:    87 DPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDSDIIGSQIMGAV 146

Query:   141 AIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKG 200
              IP   + +G  I   +                 L +++TP ++  LY+ G+    E  G
Sbjct:   147 GIPTEQLCSGNRIEGLFPILNSSGKPCKQGAVLGLSIQYTPMERMRLYQMGVGSGNECVG 206

Query:   201 VRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYI 260
             V   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED+  AI +A  LIYI
Sbjct:   207 VPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAIRQARRLIYI 266

Query:   261 VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320
              GWSVFH ++L+R    P   G   TLGELLK KS+EGVRVL+LVWDD TS   LG KT 
Sbjct:   267 TGWSVFHPVRLVRRTNDPT-EG---TLGELLKVKSQEGVRVLVLVWDDPTSRSLLGFKTQ 322

Query:   321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGN 380
             GVM T DEET++FFKHSSV  +L PR      S+ K+  VGTI+THHQK V+VD +A+ N
Sbjct:   323 GVMNTSDEETRRFFKHSSVQVLLCPRSGGKGHSFIKKSEVGTIYTHHQKTVIVDAEAAQN 382

Query:   381 NRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY-PIGTKAPREPWHDLHCR 439
              RKI AF+GG+DLC+GR+DTP+H LFR L T+ KDDFHNP +       PREPWHDLH +
Sbjct:   383 RRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTLHKDDFHNPNFVTTADDGPREPWHDLHSK 442

Query:   440 LDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRI 486
             +DGPAAYDVL NFE+RW KA+K   +  K K  S   DD L++I RI
Sbjct:   443 IDGPAAYDVLANFEERWMKASKPRGIG-KLKSSS---DDSLLRIDRI 485

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IGI

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006643 "membrane lipid metabolic process" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

TAIR|locus:2126001 PLDBETA2 "phospholipase D beta 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1073 (382.8 bits), Expect = 2.5e-124, Sum P(3) = 2.5e-124
 Identities = 208/411 (50%), Positives = 265/411 (64%)

Query:    81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTA 140
             DPYV++ V  A + RT V+ NS+ PVW +HF +P+AH  + +   VKD D  G+Q+IG  
Sbjct:   161 DPYVSISVAGAVIGRTYVISNSENPVWQQHFYVPVAHHAAEVHFVVKDSDAVGSQLIGIV 220

Query:   141 AIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKG 200
              IP   I +G  I   Y                 L +++T  +K  +Y  G+   P ++G
Sbjct:   221 TIPVEQIYSGARIEGTYSIRDSNGKPCKPGATLSLSIQYTSMNKLSVYHSGVGAGPYYQG 280

Query:   201 VRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYI 260
             V   YFPLR+G  V LYQDAHV EG+LP I L  G  Y+ G CW D+ HAI +A  LIYI
Sbjct:   281 VPGTYFPLREGGSVTLYQDAHVPEGMLPGIKLGNGMCYEHGKCWHDMFHAICQARRLIYI 340

Query:   261 VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320
              GWSV+H ++L+R++  P     +  LGELL+ KS+EGVRVLLLVWDD TS + LG  T 
Sbjct:   341 TGWSVWHNVRLVRDKEDP---SSECRLGELLRSKSQEGVRVLLLVWDDPTSQNILGYMTD 397

Query:   321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGN 380
             GVM THDEET++FFK SSV  +L PR A  + S+ KQ+ VGTI+THHQK ++VD  A GN
Sbjct:   398 GVMGTHDEETRRFFKDSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQKNLIVDADAGGN 457

Query:   381 NRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKA-PREPWHDLHCR 439
              RKI AF+GG+DLCDGRYDTP+H LFR L T    D+HNPT+       PREPWHDLH +
Sbjct:   458 RRKIVAFVGGLDLCDGRYDTPQHPLFRTLQTDHNGDYHNPTFTGNVSGCPREPWHDLHSK 517

Query:   440 LDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWIL 490
             +DGPAAYDVL NFE+RW KA K   +  K K  S+  DD L++I RI  IL
Sbjct:   518 IDGPAAYDVLTNFEERWLKAAKPHRIN-KLK-TSY--DDALLRIDRIPDIL 564

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

TAIR|locus:2137035 PLDGAMMA3 "phospholipase D gamma 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1065 (380.0 bits), Expect = 1.7e-123, Sum P(3) = 1.7e-123
 Identities = 204/411 (49%), Positives = 265/411 (64%)

Query:    81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTA 140
             DPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   VKD D+ G+QIIG  
Sbjct:    94 DPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAKVHFVVKDSDIIGSQIIGAV 153

Query:   141 AIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKG 200
              IP   + +G  I   +                 L +++ P ++  LY++G+    E  G
Sbjct:   154 EIPTEQLCSGNRIEGLFPILNSRGKPCKQGAVLSLSIQYIPMERMRLYQKGVGFGVECVG 213

Query:   201 VRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYI 260
             V   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED+  AI  A  LIYI
Sbjct:   214 VPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAIRRARRLIYI 273

Query:   261 VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320
              GWSVFH ++L+R    P  +G   TLGELLK KS+EGVRVL+LVWDD TS   LG  T 
Sbjct:   274 TGWSVFHPVRLVRRNNDPT-QG---TLGELLKVKSQEGVRVLVLVWDDPTSRSLLGFSTK 329

Query:   321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGN 380
             G+M T DEET++FFKHSSV  +L PRY     S+ K+  V TI+THHQK ++VD +A+ N
Sbjct:   330 GLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTMIVDAEAAQN 389

Query:   381 NRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY-PIGTKAPREPWHDLHCR 439
              RKI AF+GG+DLC+GR+DTP+H LFR L T+ KDDFHNP +       PREPWHDLH +
Sbjct:   390 RRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTIHKDDFHNPNFVTTADDGPREPWHDLHSK 449

Query:   440 LDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWIL 490
             +DGPAAYDVL NFE+RW KA+K   +     R+    DD L+++ RI  I+
Sbjct:   450 IDGPAAYDVLANFEERWMKASKPRGIG----RLRTSSDDSLLRLDRIPDIM 496

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

TAIR|locus:2137025 PLDGAMMA2 "phospholipase D gamma 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1042 (371.9 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
 Identities = 218/478 (45%), Positives = 289/478 (60%)

Query:    15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHXXXXXXX 74
             LHG+LD+ +  A+ LPNM      L    +  ++ +         +  DG +        
Sbjct:    34 LHGNLDIWVKEAKHLPNMICYRNKLVGGISFSELGRR-------IRKVDGEK-------- 78

Query:    75 XXXXXXDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA 134
                   DPYVTV +  A + RT V+ NS+ PVW +HF++P+AH  + +   VKD+D  G+
Sbjct:    79 SSKFTSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDNDPIGS 138

Query:   135 QIIGTAAIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAG 194
             +IIG   IP   + +G  I   +                 L +++TP ++  LY++G+  
Sbjct:   139 KIIGVVGIPTKQLCSGNRIEGLFPILNSSGKPCRKGAMLSLSIQYTPMERMRLYQKGVGS 198

Query:   195 DPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEA 254
               E  GV   YFPLRKG  V LYQDAHV +G LP + LDGG  Y+ G CWED+  AI  A
Sbjct:   199 GVECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAIRRA 258

Query:   255 HHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDK 314
               LIYI GWSVFH ++L+R    P   G   TLGELLK KS+EGVRVL+LVWDD TS   
Sbjct:   259 RRLIYITGWSVFHPVRLVRRNNDPT-EG---TLGELLKVKSQEGVRVLVLVWDDPTSMSF 314

Query:   315 LGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVD 374
              G  T G+M T DEET++FFKHSSV  +L PRY     S+ K+  V TI+THHQK ++VD
Sbjct:   315 PGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTMIVD 374

Query:   375 TQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTK--APREP 432
              +A+ N RKI AF+GG+DLC+GR+DTP+H LF  L T+ KDDFHNP + + T+   PREP
Sbjct:   375 AEAAQNRRKIVAFVGGLDLCNGRFDTPKHSLFGTLKTLHKDDFHNPNF-VTTEDVGPREP 433

Query:   433 WHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWIL 490
             WHDLH ++DGPAAYDVL NFE+RW  A+K   +  K  R S   DD L++I RI  I+
Sbjct:   434 WHDLHSKIDGPAAYDVLANFEERWM-ASKPRGIG-K-GRTSF--DDSLLRINRIPDIM 486

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0006643 "membrane lipid metabolic process" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

UNIPROTKB|P86387 PLD1 "Phospholipase D alpha 1" [Carica papaya (taxid:3649)]

 Score = 949 (339.1 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
 Identities = 188/383 (49%), Positives = 247/383 (64%)

Query:    83 YVTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
             Y T+ + +A V RTR++K+    P W E F+I  AH  SN+   VKDD+  GA +IG A 
Sbjct:    50 YATIDLERARVGRTRIIKDEPNNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAY 109

Query:   142 IPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
             +P   +  G+ + RW +                ++L+F    K+  +  GI G   + GV
Sbjct:   110 VPVEELIRGDQVDRWVEILDEDKNPIEGDSKIHVKLQFFDVKKDSNWNMGIKG-ARYLGV 168

Query:   202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
                ++  R+G  V LYQDAHV +G +P+IPL GGK Y+P  CWED+  AI+ A HLIYI 
Sbjct:   169 PYTFYSQRRGCRVSLYQDAHVPDGFIPKIPLAGGKYYEPHRCWEDVFDAITNARHLIYIT 228

Query:   262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
             GWSV+ +I LIR+  RP P GGD+TLGELLK K+ EGV+VL+LVWDD+TS   L  K  G
Sbjct:   229 GWSVYTEITLIRDSRRPKP-GGDVTLGELLKQKASEGVKVLMLVWDDRTSVGLL--KKDG 285

Query:   322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA-SGN 380
             +MATHDEET  +F+++ V+CVL PR      S+ +   + T+FTHHQK V+VD +  SG 
Sbjct:   286 LMATHDEETANYFQNTDVHCVLCPRNPDDGGSFVQGLQISTMFTHHQKIVVVDGEMPSGE 345

Query:   381 N--RKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG--TKA-PREPWHD 435
             +  R+I +F+GGIDLCDGRYDTP H LFR LDT   DDFH P +     TK  PREPWHD
Sbjct:   346 SQMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFAGSSITKGGPREPWHD 405

Query:   436 LHCRLDGPAAYDVLINFEQRWRK 458
             +H RL+GP A+DVL NFEQRWR+
Sbjct:   406 IHSRLEGPVAWDVLFNFEQRWRQ 428

GO:0034638 "phosphatidylcholine catabolic process" evidence=IDA

TAIR|locus:2093227 PLDALPHA1 "phospholipase D alpha 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 9.6e-101, Sum P(2) = 9.6e-101
 Identities = 188/384 (48%), Positives = 246/384 (64%)

Query:    83 YVTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
             Y T+ + +A V RTR +KN  + P W E F+I  AH  S++   VKDD+  GA +IG A 
Sbjct:    51 YATIDLQKARVGRTRKIKNEPKNPKWYESFHIYCAHLASDIIFTVKDDNPIGATLIGRAY 110

Query:   142 IPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
             IP   +  GE + +W +                ++L++   +++  +  GI    +  GV
Sbjct:   111 IPVDQVINGEEVDQWVEILDNDRNPIQGGSKIHVKLQYFHVEEDRNWNMGIKS-AKFPGV 169

Query:   202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
                +F  R+G  V LYQDAH+ +  +P IPL GGK Y+P  CWEDI  AIS A HLIYI 
Sbjct:   170 PYTFFSQRQGCKVSLYQDAHIPDNFVPRIPLAGGKNYEPQRCWEDIFDAISNAKHLIYIT 229

Query:   262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
             GWSV+ +I L+R+  RP P GGD+T+GELLK K+ EGVRVLLLVWDD+TS D L  K  G
Sbjct:   230 GWSVYAEIALVRDSRRPKP-GGDVTIGELLKKKASEGVRVLLLVWDDRTSVDVL--KKDG 286

Query:   322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASG 379
             +MATHDEET+ FF+ S V+C+L PR      S  +   + T+FTHHQK V+VD++  + G
Sbjct:   287 LMATHDEETENFFRGSDVHCILCPRNPDDGGSIVQSLQISTMFTHHQKIVVVDSEMPSRG 346

Query:   380 NN--RKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG--TKA-PREPWH 434
              +  R+I +F+GGIDLCDGRYDTP H LFR LDTV  DDFH P +     TK  PREPWH
Sbjct:   347 GSEMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTVHHDDFHQPNFTGAAITKGGPREPWH 406

Query:   435 DLHCRLDGPAAYDVLINFEQRWRK 458
             D+H RL+GP A+DV+ NFEQRW K
Sbjct:   407 DIHSRLEGPIAWDVMYNFEQRWSK 430

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IDA;IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

TAIR|locus:2035211 PLDALPHA2 "phospholipase D alpha 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 1.2e-98, Sum P(2) = 1.2e-98
 Identities = 183/383 (47%), Positives = 242/383 (63%)

Query:    83 YVTVVVPQATVARTR-VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAA 141
             Y T+ + +A V RTR + K  + P W E F+I   H   ++   VKD +  GA +IG   
Sbjct:    51 YATIDLEKARVGRTRKITKEPKNPKWFESFHIYCGHMAKHVIFTVKDANPIGATLIGRGY 110

Query:   142 IPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKGV 201
             IP   I  GE + RW D                ++L++   +K+  + +GI    +  GV
Sbjct:   111 IPVEDILHGEEVDRWVDILDNEKNPIAGGSKIHVKLQYFGVEKDKNWNRGIKS-AKFPGV 169

Query:   202 RNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIV 261
                +F  R+G  V LYQDAH+    +P+IPL GGK Y+P  CWEDI  AI+ A HLIYI 
Sbjct:   170 PYTFFSQRRGCKVSLYQDAHIPGNFVPKIPLAGGKNYEPHRCWEDIFDAITNAKHLIYIT 229

Query:   262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
             GWSV+ +I L+R+  RP  +GGD+T+GELLK K+ EGV+V+LLVWDD+TS D L  K  G
Sbjct:   230 GWSVYTEISLVRDSRRP-KQGGDVTVGELLKKKASEGVKVILLVWDDRTSVDLL--KKDG 286

Query:   322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA-SGN 380
             +MATHDEET+ FF+ + VNC+L PR      S  +   + T+FTHHQK V+VD++  SG 
Sbjct:   287 LMATHDEETENFFRGTDVNCILCPRNPDDGGSIVQNLQISTMFTHHQKIVVVDSEMPSGG 346

Query:   381 NR--KITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG--TKA-PREPWHD 435
             +R  +I +F+GG+DLCDGRYDTP H LFR LDT   DDFH P +     TK  PREPWHD
Sbjct:   347 SRSRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGAAITKGGPREPWHD 406

Query:   436 LHCRLDGPAAYDVLINFEQRWRK 458
             +HCRL+GP A+DVL NFEQRW +
Sbjct:   407 IHCRLEGPIAWDVLYNFEQRWSR 429

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2145452 PLDALPHA3 "phospholipase D alpha 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 6.9e-94, Sum P(2) = 6.9e-94
 Identities = 178/382 (46%), Positives = 238/382 (62%)

Query:    83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAI 142
             Y T+ + ++ VART + ++   P W + F++  AH +S +   VK+D+   A +IG A +
Sbjct:    62 YATIDLDRSRVARTMMRRH---PKWLQSFHVYTAHSISKIIFTVKEDEPVSASLIGRAYL 118

Query:   143 PAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYRQGIAGDPEHKGVR 202
             P   + TG+ I RW D                + +KFT   ++  + +GI   P   GV 
Sbjct:   119 PVTEVITGQPIDRWLDILDENRRPIQGGSKLHVRVKFTHVTQDVNWNKGIIL-PSFNGVP 177

Query:   203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKPGTCWEDICHAISEAHHLIYIV 261
             NAYF  R+G  V LYQDAHV     P++ L GG+ +YK   CWE+I  AI EA HLIYI 
Sbjct:   178 NAYFNQREGCKVTLYQDAHVLNEY-PDVTLTGGQVIYKHHRCWEEIFDAIWEAKHLIYIA 236

Query:   262 GWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG 321
             GWSV   + L+R+  R  P GGDL LGELLK K+EE V VL+LVWDD+TSH+    K  G
Sbjct:   237 GWSVNTDVTLVRDPKRTRP-GGDLKLGELLKKKAEENVTVLMLVWDDRTSHEVF--KRDG 293

Query:   322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGN- 380
             +M THD+ET  +FK++ V CVL PR   +  S  +   V T+FTHHQK ++VD++  G+ 
Sbjct:   294 LMMTHDQETYDYFKNTKVRCVLCPRNPDNGDSIVQGFEVATMFTHHQKTIVVDSEVDGSL 353

Query:   381 -NRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYP---IGTKAPREPWHDL 436
               R+I +F+GGIDLCDGRYDT EH LF  L++V  +DFH P +    I    PREPWHD+
Sbjct:   354 TKRRIVSFLGGIDLCDGRYDTVEHPLFGTLNSVHANDFHQPNFDGASIKKGGPREPWHDI 413

Query:   437 HCRLDGPAAYDVLINFEQRWRK 458
             HC+LDGPAA+DVL NFEQRW K
Sbjct:   414 HCKLDGPAAWDVLYNFEQRWMK 435

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0046466 "membrane lipid catabolic process" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5Y0	PLDD1_ARATH	3, ., 1, ., 4, ., 4	0.7036	0.9745	0.6186	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.4.4	0.914
3rd Layer	3.1.4	0.921

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__496__AT4G35790.1 annotation not avaliable (869 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	551
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	0.0
PLN02270	808	PLN02270, PLN02270, phospholipase D alpha	1e-140
cd09198	180	cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat	1e-110
PLN02352	758	PLN02352, PLN02352, phospholipase D epsilon	6e-88
cd09139	176	cd09139, PLDc_pPLD_like_1, Catalytic domain, repea	8e-85
cd09197	178	cd09197, PLDc_pPLDalpha_1, Catalytic domain, repea	2e-71
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	4e-68
cd09104	147	cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, re	5e-25
PLN02866	1068	PLN02866, PLN02866, phospholipase D	1e-20
cd09138	146	cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domai	4e-20
cd00030	102	cd00030, C2, C2 domain	2e-16
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-14
cd09140	146	cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain	2e-13
cd09842	151	cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1,	2e-12
pfam00168	85	pfam00168, C2, C2 domain	3e-12
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	3e-11
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	1e-09
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-09
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	1e-08
cd09843	145	cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1,	2e-08
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-07
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-07
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	1e-06
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	8e-06
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	1e-05
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-05
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	7e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-04
cd04013	146	cd04013, C2_SynGAP_like, C2 domain present in Ras	1e-04
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-04
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	1e-04
cd09110	154	cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, o	2e-04
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-04
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	2e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-04
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	8e-04
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	9e-04
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	0.001
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	0.001
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	0.003
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	0.003
COG1502	438	COG1502, Cls, Phosphatidylserine/phosphatidylglyce	0.004

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score =  818 bits (2113), Expect = 0.0
 Identities = 387/550 (70%), Positives = 442/550 (80%), Gaps = 13/550 (2%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMT 364

Query: 359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFH 418
           +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFH
Sbjct: 365 VVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFH 424

Query: 419 NPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478
           NPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD
Sbjct: 425 NPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDD 484

Query: 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF 538
            LI+IGRISWILSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGF
Sbjct: 485 ALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544

Query: 539 PKSIEDIDDQ 548
           PK  ++ + Q
Sbjct: 545 PKYEDEAEAQ 554

Length = 868

>gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha

 Score =  424 bits (1091), Expect = e-140
 Identities = 214/473 (45%), Positives = 284/473 (60%), Gaps = 43/473 (9%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQE-PVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQII 137
            S  Y T+ + +A V RTR ++N  + P W E F+I  AH  SN+   VKDD+  GA +I
Sbjct: 46  ESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLI 105

Query: 138 GTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPE 197
           G A IP   I  GE + RW +I+    +P   G+ I ++L++    K+  + +GI    +
Sbjct: 106 GRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRS-AK 164

Query: 198 HKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHL 257
             GV   +F  R+G  V LYQDAH+ +  +P+IPL GGK Y+P  CWED+  AI+ A HL
Sbjct: 165 FPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHL 224

Query: 258 IYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV 317
           IYI GWSV+ +I L+R+  RP P GGD+T+GELLK K+ EGVRVLLLVWDD+TS D L  
Sbjct: 225 IYITGWSVYTEISLVRDSRRPKP-GGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLL-- 281

Query: 318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ- 376
           K  G+MATHDEET+ FF+ + V+C+L PR      S  +   + T+FTHHQK V+VD++ 
Sbjct: 282 KKDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEM 341

Query: 377 ASGNN--RKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTY---PIGTKAPRE 431
            +G +  R+I +F+GGIDLCDGRYDTP H LFR LDT   DDFH P +    I    PRE
Sbjct: 342 PNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPRE 401

Query: 432 PWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILS 491
           PWHD+H RL+GP A+DVL NFEQRW K                   D L++         
Sbjct: 402 PWHDIHSRLEGPIAWDVLFNFEQRWSKQGG---------------KDILVQ--------- 437

Query: 492 PELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIED 544
               L+     I+P       V   DD E W+VQ+FRSID G+  GFP++ E 
Sbjct: 438 ----LRELEDVIIPPSP----VMFPDDHEVWNVQLFRSIDGGAAFGFPETPEA 482

Length = 808

>gnl|CDD|197294 cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat 1, of plant beta-type phospholipase D

 Score =  325 bits (834), Expect = e-110
 Identities = 134/180 (74%), Positives = 154/180 (85%)

Query: 234 GGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY 293
           GGK+Y+ G CWED+C AI EA  LIYI GWSV+HK+KLIR++ RP+P GG+LTLGELLK 
Sbjct: 1   GGKVYEHGKCWEDMCDAIREARRLIYITGWSVYHKVKLIRDKLRPVPPGGELTLGELLKS 60

Query: 294 KSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLS 353
           KS+EGVRVLLLVWDDKTSH  LG KT GVMATHDEETK+FFKHSSV CVLAPRYA  K S
Sbjct: 61  KSQEGVRVLLLVWDDKTSHSILGYKTDGVMATHDEETKRFFKHSSVQCVLAPRYAGKKHS 120

Query: 354 YFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVF 413
           +FKQQ+VGT++THHQK V+VD  A GN RKITAFIGG+DLCDGRYDTP+H LFR L+T+ 
Sbjct: 121 WFKQQVVGTLYTHHQKNVIVDADAGGNRRKITAFIGGLDLCDGRYDTPQHPLFRTLETIH 180

Catalytic domain, repeat 1, of plant beta-type phospholipase D (PLDbeta, EC 3.1.4.4). Plant PLDbeta is a phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and requires nanomolar calcium and cytosolic factors for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Sequence analysis shows that plant PLDbeta is evolutionarily divergent from alpha-type plant PLD, and plant PLDbeta is more closely related to mammalian and yeast PLDs than to plant PLDalpha. Like other PLD enzymes, the monomer of plant PLDbeta consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDbeta may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 180

>gnl|CDD|215202 PLN02352, PLN02352, phospholipase D epsilon

 Score =  286 bits (734), Expect = 6e-88
 Identities = 178/469 (37%), Positives = 240/469 (51%), Gaps = 68/469 (14%)

Query: 83  YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAA 141
           YVT+ +    VA+T    +  + VWN+ F I  AHPL S + I +K        I+G   
Sbjct: 39  YVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK----CSILGRFH 91

Query: 142 IPAHTIAT-GELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKG 200
           I AH I T    I+ ++ +I  +G P  P   ++  L F P +  P + + I  +   +G
Sbjct: 92  IQAHQIVTEASFINGFFPLIMENGKP-NPELKLRFMLWFRPAELEPTWCK-ILENGSFQG 149

Query: 201 VRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYI 260
           +RNA FP R   HV LYQDAH      P + L G     P   WED+  AI  A HLIYI
Sbjct: 150 LRNATFPQRSNCHVILYQDAHHCSTFQPPVDLCGS----PRKLWEDVYKAIEGAKHLIYI 205

Query: 261 VGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP 320
            GWS   K+ L+R+    +P    + LGELLK K+EEGV V +++WDD+TS     +K  
Sbjct: 206 AGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNK 263

Query: 321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA--S 378
           GVM THDE+   +FKH+ V C L PR       + K     T+F HHQK + VDT+A  S
Sbjct: 264 GVMGTHDEDAFAYFKHTKVVCKLCPRL------HKK---FPTLFAHHQKTITVDTRANDS 314

Query: 379 GNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDT-VFKDDFHNPTYPIGTK----APREPW 433
            + R+I +F+GG+DLCDGRYDT EH LFR L+T     DF+  T   G K     PREPW
Sbjct: 315 ISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQ-TSIAGAKLQKGGPREPW 373

Query: 434 HDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPE 493
           HD H  + G AA+DVL NFEQRW K    +                L+    I  ++   
Sbjct: 374 HDAHACIVGEAAWDVLTNFEQRWTKQCNPS---------------VLVPTSSIRNLVHQP 418

Query: 494 LSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSI 542
            S ++N                     NW VQ++RSID  S    P+++
Sbjct: 419 GSSESNN-------------------RNWKVQVYRSIDHVSASHMPRNL 448

Length = 758

>gnl|CDD|197237 cd09139, PLDc_pPLD_like_1, Catalytic domain, repeat 1, of plant phospholipase D and similar proteins

 Score =  260 bits (666), Expect = 8e-85
 Identities = 104/179 (58%), Positives = 122/179 (68%), Gaps = 4/179 (2%)

Query: 234 GGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY 293
            G++Y P   WED+  AI  A HLIYI GWSV  +I LIR+  R  P     TLGELLK 
Sbjct: 1   NGQVYNPRRLWEDMYDAICNAKHLIYIAGWSVNPEISLIRDSEREDPPKYSPTLGELLKR 60

Query: 294 KSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLS 353
           K+EEGV VLLL+WDDKT     G K  GVMATHDEET+ FF+++ VNC+L PR   +  +
Sbjct: 61  KAEEGVAVLLLLWDDKTV---NGFKNDGVMATHDEETRNFFRNTKVNCLLCPRNGDAGNT 117

Query: 354 YFKQQIVGTIFTHHQKCVLVDTQAS-GNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDT 411
           Y +Q  V T FTHHQK V+VD  A  G  R+I AF+GGIDLCDGRYD PEH LFR LDT
Sbjct: 118 YVEQIEVSTAFTHHQKTVIVDAPAPNGERREIVAFVGGIDLCDGRYDNPEHSLFRTLDT 176

Catalytic domain, repeat 1, of plant phospholipase D (PLD, EC 3.1.4.4) and similar proteins. Plant PLDs have broad substrate specificity and can hydrolyze the terminal phosphodiester bond of several common membrane phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Most plant PLDs possess a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require calcium for activity, which is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDs may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. This subfamily includes two types of plant PLDs, alpha-type and beta-type PLDs, which are derived from different gene products and distinctly regulated. The zeta-type PLD from Arabidopsis is not included in this subfamily. Length = 176

>gnl|CDD|197293 cd09197, PLDc_pPLDalpha_1, Catalytic domain, repeat 1, of plant alpha-type phospholipase D

 Score =  226 bits (577), Expect = 2e-71
 Identities = 103/181 (56%), Positives = 128/181 (70%), Gaps = 6/181 (3%)

Query: 234 GGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY 293
           GG+ Y+P  CWED+  AI  A HLIYI GWSV+ +I L+R+  RP P GGDLTLGELLK 
Sbjct: 1   GGQKYEPTRCWEDVFDAIMNAKHLIYITGWSVYCEIVLVRDSRRPKP-GGDLTLGELLKK 59

Query: 294 KSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLS 353
           K+ EGVRVL+LVWDD+TS + L  K  G+MATHDEET+ FF+ S V+C L PR      S
Sbjct: 60  KASEGVRVLMLVWDDRTSVEFL--KKDGLMATHDEETEAFFQDSDVHCFLCPRNPDDGGS 117

Query: 354 YFKQQIVGTIFTHHQKCVLVDTQASGNN---RKITAFIGGIDLCDGRYDTPEHRLFRDLD 410
             +   + T+FTHHQK V+VD+   G++   R+I +F+GGIDLCDGRYD P H LFR LD
Sbjct: 118 KVQGLQISTMFTHHQKIVVVDSPMPGSDSGRRRIVSFVGGIDLCDGRYDNPFHSLFRTLD 177

Query: 411 T 411
            
Sbjct: 178 D 178

Catalytic domain, repeat 1, of plant alpha-type phospholipase D (PLDalpha, EC 3.1.4.4). Plant PLDalpha is a phosphatidylinositol 4,5-bisphosphate (PIP2)-independent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require millimolar calcium for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDalpha consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDalpha may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 178

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score =  216 bits (553), Expect = 4e-68
 Identities = 79/170 (46%), Positives = 99/170 (58%), Gaps = 12/170 (7%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
             + LHG LD+ I  A  LPNMDM SE LRR F+    C  P             RH   
Sbjct: 1   AAVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLK-----RPSSHRHV-- 53

Query: 71  IIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD 130
                  ITSDPY TV +  A VARTRV++NS+ PVWNE F+I  AH  S++E  VKD+D
Sbjct: 54  -----GKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDND 108

Query: 131 VFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180
           V GAQ+IG A IP   + +GE +  W  I+  +G PPKPGA I++ L+FT
Sbjct: 109 VVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|197203 cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins

 Score =  100 bits (251), Expect = 5e-25
 Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 30/167 (17%)

Query: 243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYK-SEEGVRV 301
            ++D+  A+  A H +YI GW V   I L      PL  G D  LG+ L+   +  GV V
Sbjct: 10  YFDDLAEALDGARHSVYITGWQVSADIIL-----APLLAGPD-RLGDTLRTLAARRGVDV 63

Query: 302 LLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVG 361
            +L+WD                   +     F + ++   VL  R               
Sbjct: 64  RVLLWDSPLLV-----LLGPDDKDLNLGFPTFLRLTTALLVLDLRL-----------RRH 107

Query: 362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRD 408
           T+F+HHQK V++D      + ++ AF+GGIDL  GRYD P+H L   
Sbjct: 108 TLFSHHQKLVVID------SAEV-AFVGGIDLAYGRYDDPDHALAAP 147

Catalytic domain, repeat 1, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 147

>gnl|CDD|215467 PLN02866, PLN02866, phospholipase D

 Score = 96.4 bits (240), Expect = 1e-20
 Identities = 74/229 (32%), Positives = 110/229 (48%), Gaps = 43/229 (18%)

Query: 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLL 304
           E I  AI  A   I+I GW +  ++ L     RP        L  LL+ K+++GV++ +L
Sbjct: 347 EAIASAIENAKSEIFITGWWLCPELYL----RRPFHDHESSRLDSLLEAKAKQGVQIYIL 402

Query: 305 VWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIF 364
           ++ +      L +K   V +    + +    H +V  +  P + SS + Y        ++
Sbjct: 403 LYKEVA----LALKINSVYS----KRRLLGIHENVKVLRYPDHFSSGV-Y--------LW 445

Query: 365 THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFK-DDFHNP--T 421
           +HH+K V+VD Q          FIGG+DLC GRYDTPEHR+      ++   D++NP  +
Sbjct: 446 SHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRES 497

Query: 422 YPIG-----------TKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKA 459
            P              K PR PWHD+HC L GP   DV  +F QRW  A
Sbjct: 498 EPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYA 546

Length = 1068

>gnl|CDD|197236 cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins

 Score = 86.8 bits (216), Expect = 4e-20
 Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 51/173 (29%)

Query: 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLL 304
             +  AI  A   I+I  W +  ++ L R    P        L  LLK K+EEGV++ +L
Sbjct: 12  WAVADAIENAKEEIFITDWWLSPELYLRR----PPAGNERWRLDRLLKRKAEEGVKIYIL 67

Query: 305 VWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYF--------- 355
           ++                      E +     +S       +Y    L            
Sbjct: 68  LYK---------------------EVELALTINS-------KYTKRTLENLHPNIKVLRH 99

Query: 356 -KQQIVGTIF-THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLF 406
                 G +  +HH+K V++D           AF+GG+DLC GR+DT +H L 
Sbjct: 100 PDHLPQGPLLWSHHEKIVVIDQS--------IAFVGGLDLCYGRWDTHQHPLT 144

Catalytic domain, repeat 1, of vertebrate phospholipases D (PLD1 and PLD2), yeast phospholipase D (PLD SPO14/PLD1), and other similar eukaryotic proteins. These PLD enzymes play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. The vertebrate PLD1 and PLD2 are membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzymes that selectively hydrolyze phosphatidylcholine (PC). Protein cofactors and calcium may be required for their activation. Yeast SPO14/PLD1 is a calcium-independent PLD, which needs PIP2 for its activity. Instead of the regulatory calcium-dependent phospholipid-binding C2 domain in plants, most mammalian and yeast PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at the N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. The PX and PH domains are also present in zeta-type PLD from Arabidopsis, which is more closely related to vertebrate PLDs than to other plant PLD types. In addition, this subfamily also includes some related proteins which have either PX-like or PH domains in their N-termini. Like other members of the PLD superfamily, the monomer of mammalian and yeast PLDs consists of two catalytic domains, each containing one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from the two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 146

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 74.4 bits (183), Expect = 2e-16
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 71  IIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDD 129
           +  K     SDPYV V +      +T+V+KN+  PVWNE F  P+  P S  L ++V D 
Sbjct: 11  LPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDK 70

Query: 130 DVFGAQ-IIGTAAIPAHTIA-TGELISRWYDI 159
           D F     +G   IP   +  +G+    W  +
Sbjct: 71  DRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 71  IIRKSKIITSDPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVK 127
           +  K K   SDPYV V +        +T+V+KN+  PVWNE F   +  P L+ LEI+V 
Sbjct: 12  LPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVY 71

Query: 128 DDDVFG-AQIIGTAAIPAHTIATGELISRW 156
           D D FG    IG   IP   +  G    + 
Sbjct: 72  DKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|197238 cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain, repeat 1, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 43/170 (25%), Positives = 59/170 (34%), Gaps = 57/170 (33%)

Query: 249 HAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLVW 306
            A+  A   I IVGW    +I+L R        GG   LG+ L + +E    + + +L W
Sbjct: 16  EALLRARRSILIVGWDFDSRIRLRRGGD---DDGGPERLGDFLNWLAERRPDLDIRILKW 72

Query: 307 D---------DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA---PRYASSKLSY 354
           D         +      L                 +  H  ++  L    P  AS     
Sbjct: 73  DFAMLYALERELLPLFLLR----------------WKTHPRIHFRLDGHHPLGAS----- 111

Query: 355 FKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404
                      HHQK V++D           AF GGIDL   R+DT EH 
Sbjct: 112 -----------HHQKIVVIDDA--------LAFCGGIDLTVDRWDTREHL 142

Catalytic domain, repeat 1, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 146

>gnl|CDD|197300 cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, of vertebrate phospholipase D1

 Score = 64.7 bits (157), Expect = 2e-12
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 34/173 (19%)

Query: 236 KLYKPGTCW-EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYK 294
           K Y    C+ ED+ +A+ EA   I+I  W +  +I L     RP+  G    L  +LK K
Sbjct: 2   KWYVNAKCYFEDVANAMEEAKEEIFITDWWLSPEIFL----KRPVVEGNRWRLDCILKRK 57

Query: 295 SEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFK--HSSVNCVLAPRYASSKL 352
           +++GVR+ ++++  K     LG+ +        E +K+     H ++  +  P + SS +
Sbjct: 58  AQQGVRIFVMLY--KEVELALGINS--------EYSKRTLMRLHPNIKVMRHPDHVSSSV 107

Query: 353 SYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405
                     ++ HH+K V++D           AF+GGIDL  GR+D  EHRL
Sbjct: 108 ---------YLWAHHEKIVVIDQS--------VAFVGGIDLAYGRWDDDEHRL 143

Catalytic domain, repeat 1, of vertebrate phospholipase D1 (PLD1). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD1 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 151

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 79  TSDPYVTV-VVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGA- 134
            SDPYV V +  Q     +T+V+KN+  PVWNE F   +  P L+ L I+V D D FG  
Sbjct: 19  KSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPELAELRIEVYDYDRFGKD 78

Query: 135 QIIGTA 140
             IG  
Sbjct: 79  DFIGEV 84

Length = 85

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 12/115 (10%)

Query: 70  KIIRKSKII-TSDPYVTVVVPQAT--VARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQ 125
             I K  ++ T D YV + +P A+    RT+ +KNS  PVWNE F   +   + N LE+ 
Sbjct: 10  TNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELT 69

Query: 126 VKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFT 180
           V D+D      +GT       +  GE +   +           P    +LE++F 
Sbjct: 70  VMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTF--------SLNPQGKEELEVEFL 116

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 80  SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN---LEIQVKD-DDVFGAQ 135
            D    V        +TRVL+N   PVWNE F  PLA        LEI VKD + V   +
Sbjct: 15  GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR 73

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
           +IG+A +    + +  L+     ++  +G P   GA+I LE+ + P
Sbjct: 74  LIGSATVSLQDLVSEGLLEVTEPLLDSNGRP--TGATISLEVSYQP 117

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 79  TSDPYVTVVV-----PQATVARTRVLK-NSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDV 131
             DPYV V +       +   +T+V+K N   PVWNE F   +  P L+ L   V D+D 
Sbjct: 24  IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDS 83

Query: 132 FGAQIIGTAAIPAHTIATG 150
                +G A +P  ++  G
Sbjct: 84  GDDDFLGQACLPLDSLRQG 102

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
           K+   SK    DPYV V V      +T V K +  P WNEHF + L  P S LE +V   
Sbjct: 12  KLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTV-LVTPQSTLEFKVWSH 70

Query: 130 DVFGA-QIIGTAAI 142
               A  ++G A++
Sbjct: 71  HTLKADVLLGEASL 84

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|197301 cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, of vertebrate phospholipase D2

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 32/161 (19%)

Query: 246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV 305
            +  A+ +A   I+I  W +  ++ L R        G D  L  +LK K+E+GVRV +L+
Sbjct: 13  AVADALEQAQEEIFITDWWLSPEVFLKRPAH-----GDDWRLDIILKRKAEQGVRVCVLL 67

Query: 306 WDDKTSHDKLGVKTPGVMATHDEETKKFFK-HSSVNCVLAPRYASSKLSYFKQQIVGTIF 364
           +  K     LG+ +           +K    H ++  +  P + +S         V  ++
Sbjct: 68  F--KEVELALGINS-------GYSKRKLMLLHPNIKVMRHPDHVAS---------VVVLW 109

Query: 365 THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL 405
            HH+K V +D        +  AF+GG+DL  GR+D  ++RL
Sbjct: 110 AHHEKMVAID--------QSVAFLGGLDLAYGRWDDSDYRL 142

Catalytic domain, repeat 1, of vertebrate phospholipase D2 (PLD2). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. They also catalyze a transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD2 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 145

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK--DDDVFGAQI 136
            SDPYV V V  A   +++V+K +  P WNE +   +   +   E++++  D+D      
Sbjct: 27  KSDPYVIVRV-GAQTFKSKVIKENLNPKWNEVYEA-VVDEVPGQELEIELFDEDPDKDDF 84

Query: 137 IGTAAIPAHTIATGELISRWY 157
           +G  +I   ++     I  W 
Sbjct: 85  LGRLSIDLGSVEKKGFIDEWL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 79  TSDPYVTVVVPQATV----ARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDV 131
            SDPYV V + Q        +T V K +  PV+NE F+  +        +L I V D D 
Sbjct: 34  LSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS 93

Query: 132 FG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169
            G  ++IG   +     + GE +  W +++A   SP KP
Sbjct: 94  VGRNEVIGQVVLGPD--SGGEELEHWNEMLA---SPRKP 127

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 65  VRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEI 124
           VR T+  +R     +SDPYV + +    V +TRV+K +  PVWNE   + + +P++ L++
Sbjct: 9   VRGTNLAVRDFT--SSDPYVVLTLGNQKV-KTRVIKKNLNPVWNEELTLSVPNPMAPLKL 65

Query: 125 QVKDDDVFGA 134
           +V D D F  
Sbjct: 66  EVFDKDTFSK 75

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 78  ITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKD-DDVFGAQI 136
            T DPY+TV      + +TRV KN+  PVWNE F I L      L + + D +     ++
Sbjct: 457 GTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKV 516

Query: 137 IGTAAIPAHT 146
           +G+  +    
Sbjct: 517 VGSTQLDLAL 526

Length = 1227

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 81  DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFGAQIIGT 139
            PYV + V + T  +++V + +  PVW E F   + +P +  LEI+VKDD     + +G+
Sbjct: 22  SPYVELTVGKTTQ-KSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK--TGKSLGS 78

Query: 140 AAIPAHTI--ATGELISRWYD 158
             +P   +       + + + 
Sbjct: 79  LTLPLSELLKEPDLTLDQPFP 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 80  SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGA-QII 137
           SDP+V   +    V +T+ +K +  PVWNE F +P+   + + L+++V D D  G   ++
Sbjct: 20  SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79

Query: 138 GTAAIP 143
           G+A I 
Sbjct: 80  GSAYID 85

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 80  SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA-QIIG 138
            DPYV V+V      RT  + N+  PVW+E   +P+  P   + ++V D +  G  + +G
Sbjct: 22  IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLG 81

Query: 139 TAAIPA 144
           +  I  
Sbjct: 82  SVEINV 87

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 71  IIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDD 130
           +I K K  TSDPYVTV V + T  RT+ +  +  PVWNE F+    +    ++++V D+D
Sbjct: 13  LIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDED 71

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 12/76 (15%)

Query: 80  SDPYVTV------VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLE-----IQVKD 128
           SDP+V V      + P     +T+V K +  P+++E F   +     ++E       VKD
Sbjct: 37  SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKD 96

Query: 129 DDVFGA-QIIGTAAIP 143
            D+ G+    G A +P
Sbjct: 97  YDLLGSNDFEGEAFLP 112

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNE--HFNIPLAHPLS-NLEIQVKDDDVFGAQ 135
           T DPY TV + Q  VART+       P W E   F+ P        L    KD       
Sbjct: 17  TRDPYCTVSLDQVEVARTKT-VEKLNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75

Query: 136 I-IGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
           I IG  A+    +  G+    W+ +          G S++L  ++
Sbjct: 76  IVIGKVALSKLDL--GQGKDEWFPLTPVDPDSEVQG-SVRLRARY 117

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 80   SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIP-LAHPLSNLEIQVKDDDVFGA-QII 137
            SDP+V + + + +V +T+V+K +  PVWNE F I  L      L I V D D      ++
Sbjct: 1061 SDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLL 1120

Query: 138  GTAAIPAHTI 147
            GTA I    +
Sbjct: 1121 GTAEIDLSKL 1130

Length = 1227

>gnl|CDD|175980 cd04013, C2_SynGAP_like, C2 domain present in Ras GTPase activating protein (GAP) family

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 94  ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQV-KDDDVFG----AQIIGTAAIPAHTIA 148
           ART     +    W EHF      P+S + + + ++ D       +Q+IGT  IP   ++
Sbjct: 41  ARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVS 100

Query: 149 TGELISRWYDIIAPSGSPPKPGASIQLE 176
           + + + +WY +  P G+    G   + E
Sbjct: 101 SRQFVEKWYPVSTPKGNGKSGGKEGKGE 128

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 146

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 79  TSDPYVTVVVPQATV-ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-DVFGAQI 136
           T DPYVT  +      ART+V K++  PVWNE   I +      L + V D  D    ++
Sbjct: 23  TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKL 82

Query: 137 IGTAAIP 143
           IGTA   
Sbjct: 83  IGTAEFD 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 75  SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL-AHPLSNLEIQVKD-DDVF 132
           S    SDPY  + V      +T+ + N+  P WN     P+ +     L++ + D D   
Sbjct: 19  SGKGKSDPYAILSVGAQRF-KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77

Query: 133 GAQIIGTAAIPAHTIATGELIS---RWY 157
           G   +G   I    +          +W 
Sbjct: 78  GKDYLGEFDIALEEVFADGKTGQSDKWI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 75  SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWN---EHFNIPLAHPLSNLEIQVKDDDV 131
           SK     PY  + +    V  TRV K +  P WN   E   +      S + + VKDD  
Sbjct: 8   SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFL-VT-DRRKSRVTVVVKDDRD 65

Query: 132 FGAQIIGTAAIP-AHTIATGELISRWY 157
               ++G+ +I     I    +  +W+
Sbjct: 66  RHDPVLGSVSISLNDLIDATSVGQQWF 92

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|197209 cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 34/91 (37%)

Query: 367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGT 426
           H+K +++D +         AF+GG ++ D  Y                         +G 
Sbjct: 98  HRKILVIDGK--------IAFVGGFNIGD-EY-------------------------LGK 123

Query: 427 KAPREPWHDLHCRLDGPAAYDVLINFEQRWR 457
                PW D H R++GPA  D+   F + W 
Sbjct: 124 DPGFGPWRDTHVRIEGPAVADLQAAFLEDWY 154

Catalytic domain, repeat 1, of bacterial cardiolipin (CL) synthase and a few homologs found in eukaryotes and archaea. Bacterial CL synthases catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily. Like other PLD enzymes, bacterial CL synthases utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 154

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQ 135
           TSDPYV       TV +++ +  +  PVW+E F +P+      L I+V D D  G  
Sbjct: 20  TSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYD-RGLT 75

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 81  DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDD-VFGAQII 137
           DPYV V      V +T V KNS  P WNE    P   P     ++IQ++D D V    +I
Sbjct: 36  DPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVI 94

Query: 138 GTAAIPAHTIA 148
           GT  I    I+
Sbjct: 95  GTHFIDLSKIS 105

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA-QII 137
           +SDPY  V V    + RT  +  +  P W E + + L      +   V D+D      +I
Sbjct: 20  SSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVI 79

Query: 138 GTAAIPAHTIAT 149
           G  ++    I+ 
Sbjct: 80  GKVSLTREVISA 91

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 10/100 (10%)

Query: 69  SKIIRKSKIITSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFN--IPLAH-PLSN 121
             +         DPYV + ++P  + +   +T V K++  PV++E F   + L       
Sbjct: 26  RNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRT 85

Query: 122 LEIQVKDDDVFGAQ---IIGTAAIPAHTIATGELISRWYD 158
           L++ VK+   F ++   ++G   I    +   +  ++WYD
Sbjct: 86  LDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYD 125

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 14/75 (18%)

Query: 80  SDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-------D 128
           SDPYV + ++P A+ A   RT+ +  ++ P +NE       + ++  +IQ K       D
Sbjct: 36  SDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY---YGITEEDIQRKTLRLLVLD 92

Query: 129 DDVFGAQIIGTAAIP 143
           +D FG   +G   IP
Sbjct: 93  EDRFGNDFLGETRIP 107

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 80  SDPYVTVV--VPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGA-Q 135
           SDPYVT+V    +  +A+TR + ++  P W+E F + +       +   V D    G   
Sbjct: 22  SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81

Query: 136 IIGTA 140
           + G A
Sbjct: 82  LCGRA 86

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 74  KSKIITSDPYVTVVVPQATVARTRVLKNS-QEPVWNE--HFNI-PLAHPLSNLEIQVKDD 129
           K K+   DPY  + +      +T+      Q P W+E   F I     P+  L++ V DD
Sbjct: 16  KRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPI--LKVAVFDD 72

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDI 159
           D     +IG   +             WY++
Sbjct: 73  DKRKPDLIGDTEVDLSPALKEGEFDDWYEL 102

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)

Query: 79  TSDPYVTVVV----PQATVARTRVLKNSQEPVWNEHF--NIPLAHPL--SNLEIQVKDDD 130
           TSDPYV V +     +    +T + K +  PV+NE F  NIPL   L  + L I V D D
Sbjct: 35  TSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPL-ERLRETTLIITVMDKD 93

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA 171
                 +IG   +   +   G  +  W D+++    P +P A
Sbjct: 94  RLSRNDLIGKIYLGWKS--GGLELKHWKDMLS---KPRQPVA 130

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 80  SDPYVTVVV-PQATVA---RTRVLKNSQEPVWN---EHFNIPLAHPL--SNLEIQVKDDD 130
            +PYV V + P  +     RT+ +K +  P WN   E+ N+     L    LE+ V D D
Sbjct: 37  RNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVR-RETLKERTLEVTVWDYD 95

Query: 131 VFGAQI-IGTAAIP-AHTIATGELISRWY 157
             G    +G   I  A  +   E    WY
Sbjct: 96  RDGENDFLGEVVIDLADALLDDE--PHWY 122

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism]

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 34/92 (36%)

Query: 366 HHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIG 425
            H+K V++D +         AF+GG ++                            Y   
Sbjct: 165 LHRKIVVIDGK--------VAFVGGANI-------------------------GDEY-FH 190

Query: 426 TKAPREPWHDLHCRLDGPAAYDVLINFEQRWR 457
                  W DLH R+ GPA  D+   F Q W 
Sbjct: 191 KDKGLGYWRDLHVRITGPAVADLARLFIQDWN 222

Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	551
PLN03008	868	Phospholipase D delta	100.0
PLN02270	808	phospholipase D alpha	100.0
PLN02352	758	phospholipase D epsilon	100.0
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	100.0
PLN02866	1068	phospholipase D	100.0
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.97
PRK12452	509	cardiolipin synthetase; Reviewed	99.96
PRK01642	483	cls cardiolipin synthetase; Reviewed	99.95
PRK11263	411	cardiolipin synthase 2; Provisional	99.91
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.91
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.9
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.84
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.84
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.83
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.81
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.8
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.8
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.78
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.78
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.78
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.78
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.78
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.77
COG1502	438	Cls Phosphatidylserine/phosphatidylglycerophosphat	99.77
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.76
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.76
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.76
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.75
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.75
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.74
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.74
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.74
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.73
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.73
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.71
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.71
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.71
PHA03003	369	palmytilated EEV membrane glycoprotein; Provisiona	99.71
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.71
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.7
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.7
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.7
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.7
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.69
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.69
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.69
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.68
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.68
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.68
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.68
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.68
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.67
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.67
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.67
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.67
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.67
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.67
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.66
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.66
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.66
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.65
PRK09428	451	pssA phosphatidylserine synthase; Provisional	99.65
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.65
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.65
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.64
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.64
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.64
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.64
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.63
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.63
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.63
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.63
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.63
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.62
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.62
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.62
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.62
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.62
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.62
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.61
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.61
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.61
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.61
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.6
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.6
PHA02820	424	phospholipase-D-like protein; Provisional	99.59
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.58
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.58
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.58
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.58
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.58
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.57
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.56
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.56
cd00138	176	PLDc Phospholipase D. Active site motifs; The PLD	99.55
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.53
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.53
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.52
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.51
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.5
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.5
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.49
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.48
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.47
PHA03003	369	palmytilated EEV membrane glycoprotein; Provisiona	99.43
PRK12452	509	cardiolipin synthetase; Reviewed	99.39
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.38
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.35
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.35
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.34
PRK13912	177	nuclease NucT; Provisional	99.31
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.29
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.27
PLN02223	537	phosphoinositide phospholipase C	99.15
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.11
PF13091	126	PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A	99.09
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.09
PRK01642	483	cls cardiolipin synthetase; Reviewed	99.08
PLN02952	599	phosphoinositide phospholipase C	99.06
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.04
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.03
PLN02230	598	phosphoinositide phospholipase C 4	99.0
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.96
PLN02222	581	phosphoinositide phospholipase C 2	98.96
PLN02228	567	Phosphoinositide phospholipase C	98.94
PRK11263	411	cardiolipin synthase 2; Provisional	98.93
PF00614	28	PLDc: Phospholipase D Active site motif; InterPro:	98.92
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.9
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.9
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.82
PHA02820	424	phospholipase-D-like protein; Provisional	98.8
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.53
KOG3603	456	consensus Predicted phospholipase D [General funct	98.41
PRK05443	691	polyphosphate kinase; Provisional	98.41
TIGR03705	672	poly_P_kin polyphosphate kinase 1. Members of this	98.3
COG1502	438	Cls Phosphatidylserine/phosphatidylglycerophosphat	98.26
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.23
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.04
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.0
PRK09428	451	pssA phosphatidylserine synthase; Provisional	97.88
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	97.86
smart00155	28	PLDc Phospholipase D. Active site motifs. Phosphat	97.44
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.38
PLN02964	644	phosphatidylserine decarboxylase	97.34
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.17
PF13918	177	PLDc_3: PLD-like domain	97.1
PF07894	284	DUF1669: Protein of unknown function (DUF1669); In	97.02
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	96.94
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.91
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	96.91
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	96.67
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	96.59
TIGR03705	672	poly_P_kin polyphosphate kinase 1. Members of this	96.51
PRK05443	691	polyphosphate kinase; Provisional	96.48
KOG3603	456	consensus Predicted phospholipase D [General funct	96.44
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	96.44
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.38
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.36
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	96.31
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	95.66
PLN03008	868	Phospholipase D delta	95.48
PF11495	233	Regulator_TrmB: Archaeal transcriptional regulator	95.48
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.42
PLN02352	758	phospholipase D epsilon	95.35
PLN02270	808	phospholipase D alpha	95.25
PLN02866	1068	phospholipase D	95.12
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.36
COG3886	198	Predicted HKD family nuclease [DNA replication, re	94.34
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	94.33
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	94.1
PF15627	156	CEP76-C2: CEP76 C2 domain	93.42
KOG1452	442	consensus Predicted Rho GTPase-activating protein	92.59
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.57
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	92.54
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	91.46
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	90.52
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	89.33
KOG0694	694	consensus Serine/threonine protein kinase [Signal	89.28
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	89.02
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	88.07
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	85.1
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	81.73
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	81.7
COG0855	696	Ppk Polyphosphate kinase [Inorganic ion transport	80.36

>PLN03008 Phospholipase D delta

Probab=100.00  E-value=1.1e-128  Score=1069.02  Aligned_cols=539  Identities=72%  Similarity=1.221  Sum_probs=492.4

Q ss_pred             CCCCceeEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEE
Q 008859            6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVT   85 (551)
Q Consensus         6 ~~~~~~~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvt   85 (551)
                      +.-+.+++||||+|+|||+||++|||||++++++++||..+..|.+.+.+.......++...+++++++++.++|||||+
T Consensus         3 ~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~   82 (868)
T PLN03008          3 EKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVT   82 (868)
T ss_pred             cccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEE
Confidence            55678899999999999999999999999999999999987777655432211222222223356778889999999999


Q ss_pred             EEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859           86 VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (551)
Q Consensus        86 V~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk  165 (551)
                      |.|++++++||+|++|+.||+|||+|+|+|+|+.+.|+|+|||+|.+|+++||++.||++++..|+.+++|++|++..++
T Consensus        83 I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~k  162 (868)
T PLN03008         83 VVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGK  162 (868)
T ss_pred             EEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHH
Q 008859          166 PPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWE  245 (551)
Q Consensus       166 p~k~~G~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~  245 (551)
                      |++.+++|+|+|+|+|++++++|.+||+++++|+|||.+|||+|+||+||||||||+++||+|.|.|.+|+.|++++|||
T Consensus       163 p~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwe  242 (868)
T PLN03008        163 PPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWE  242 (868)
T ss_pred             CCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHH
Confidence            99999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccC
Q 008859          246 DICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMAT  325 (551)
Q Consensus       246 ~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t  325 (551)
                      ||++||++|||+|||++|+++|+++|+|++.  .|.+.+.+|++|||+||+|||+|+|||||+.+|+..+++++.|+|.|
T Consensus       243 di~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~--~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t  320 (868)
T PLN03008        243 DICYAISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT  320 (868)
T ss_pred             HHHHHHHhhhheEEEeceeecceeEEecCCC--CCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence            9999999999999999999999999999986  34445789999999999999999999999999998788999999999


Q ss_pred             CcHHHHhHhcCCCcEEEecCCCCcccccccccc-----------cccccccCccceEEEccCCCCCCcceEEEEceeecc
Q 008859          326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC  394 (551)
Q Consensus       326 ~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~-----------~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~  394 (551)
                      ||++|+++|++++|+|++||++++.+.+++++.           ..+++|+||||+||||+++++++|+++|||||+|||
T Consensus       321 hdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc  400 (868)
T PLN03008        321 HDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLC  400 (868)
T ss_pred             ccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceecc
Confidence            999999999999999999999999989998873           556899999999999998888899999999999999


Q ss_pred             ccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCCcchhcccccccC
Q 008859          395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH  474 (551)
Q Consensus       395 ~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~~~~~~~~~~~~~  474 (551)
                      +|||||+.|++|++|+++|++||+||.+..+.++|++||||+|++|+||||++|+.+|++||+++++++.+..+.++...
T Consensus       401 ~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~  480 (868)
T PLN03008        401 DGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTH  480 (868)
T ss_pred             CCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccc
Confidence            99999999999999999999999999998888889999999999999999999999999999999998666666777889


Q ss_pred             CCcccccccCCCCcccCCcccccCCCccccCCCCCccccccCCCCCceEEEEEeeeCCCCcCCCCCCHHHHh
Q 008859          475 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDID  546 (551)
Q Consensus       475 ~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~s~~~~p~~~~~a~  546 (551)
                      |++|.|++++++++++.|+..+.++.+..+|++++.++..+++|+++|+||||||||+||++|||+.+++|+
T Consensus       481 ~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~  552 (868)
T PLN03008        481 WQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAE  552 (868)
T ss_pred             cccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhh
Confidence            999999999999999999876666666667766665666667999999999999999999999998655543

>PLN02270 phospholipase D alpha

Probab=100.00  E-value=8.6e-117  Score=975.25  Aligned_cols=473  Identities=45%  Similarity=0.814  Sum_probs=428.4

Q ss_pred             EEEeeEEEEEEEEeecCCCCCCCchhhhhccccccc-CCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 008859           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDV-CKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA   91 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~   91 (551)
                      +||||+|+|+|+||++||||++ ++.+++++..+.. |..                        ..++|||||||+|+++
T Consensus         4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~------------------------~~~~~~~y~tv~~~~a   58 (808)
T PLN02270          4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGV------------------------GKGESQLYATIDLEKA   58 (808)
T ss_pred             eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccC------------------------CCCCCCceEEEEeCCc
Confidence            4899999999999999999866 5556655554321 111                        1136999999999999


Q ss_pred             eeEEeeecCC-CCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCC
Q 008859           92 TVARTRVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG  170 (551)
Q Consensus        92 ~v~rTrvi~n-s~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~  170 (551)
                      +++||||++| +.||+|+|+|+|+|||++++|+|+|||+|.+|+++||+++||+++|++|+.+++||+|++.+|||++.+
T Consensus        59 ~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~  138 (808)
T PLN02270         59 RVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGG  138 (808)
T ss_pred             EEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCC
Confidence            9999999999 469999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHH
Q 008859          171 ASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHA  250 (551)
Q Consensus       171 G~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~a  250 (551)
                      .+|+|+|+|+|++.+++|.+||++ ++|+|||.+|||+|+||+||||||||++++|+|.|+|.+|+.|++.+||||+++|
T Consensus       139 ~~~~~~~~f~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~A  217 (808)
T PLN02270        139 SKIHVKLQYFEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDA  217 (808)
T ss_pred             CEEEEEEEEEEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHH
Confidence            999999999999999999999977 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHH
Q 008859          251 ISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEET  330 (551)
Q Consensus       251 I~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~  330 (551)
                      |.+|||+|||++|+|+++++|+|++.++.|. +..+|++||++||++||+|+||+||+.+|..  .++..|+|.||++++
T Consensus       218 I~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~-~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~--~~k~~g~m~thd~~t  294 (808)
T PLN02270        218 ITNAKHLIYITGWSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVD--LLKKDGLMATHDEET  294 (808)
T ss_pred             HHhhhcEEEEEEeecCCCceEecCCCCCCCC-CcchHHHHHHHHhcCCCEEEEEEEcCcccch--hhccccccccCHHHH
Confidence            9999999999999999999999987765555 4689999999999999999999999998764  356789999999999


Q ss_pred             HhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCC---CCcceEEEEceeeccccccCCCcccccc
Q 008859          331 KKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG---NNRKITAFIGGIDLCDGRYDTPEHRLFR  407 (551)
Q Consensus       331 ~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~---~~~~~vafvGG~dL~~~R~Dt~~H~l~~  407 (551)
                      +++|++++|+|+|||++|+.+.+++++...++.++||||+||||+.+++   ++|+++|||||+|||+|||||++|++|+
T Consensus       295 ~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~  374 (808)
T PLN02270        295 ENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFR  374 (808)
T ss_pred             HHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccc
Confidence            9999999999999999999888888877888999999999999998543   5899999999999999999999999999


Q ss_pred             cccccccCCCCCCCCCC---CCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCCcchhcccccccCCCcccccccC
Q 008859          408 DLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIG  484 (551)
Q Consensus       408 ~l~~~~~~d~~~~~~~~---~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~  484 (551)
                      +|+|+|++||+||+|..   ++++||+||||+|++|+||||++|+.+|++||+.+++.               ++++.++
T Consensus       375 ~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~---------------~ll~~~~  439 (808)
T PLN02270        375 TLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGK---------------DILVQLR  439 (808)
T ss_pred             cccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCc---------------cchhhhc
Confidence            99999999999999973   68889999999999999999999999999999998875               4566677


Q ss_pred             CCCcccCCcccccCCCccccCCCCCccccccCCCCCceEEEEEeeeCCCCcCCCCCCHHHHh
Q 008859          485 RISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDID  546 (551)
Q Consensus       485 ~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~s~~~~p~~~~~a~  546 (551)
                      ++++++.|+.                +. ..++++++|+||||||||+++++|||+.+++|+
T Consensus       440 ~~~~~~~P~~----------------~~-~~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~  484 (808)
T PLN02270        440 ELEDVIIPPS----------------PV-MFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAA  484 (808)
T ss_pred             ccccccCCCC----------------cc-cCCCcCCccccceeecccchhhccCCCCcchhh
Confidence            7777765552                11 125778999999999999999999999877663

>PLN02352 phospholipase D epsilon

Probab=100.00  E-value=3.9e-104  Score=873.44  Aligned_cols=443  Identities=40%  Similarity=0.713  Sum_probs=391.4

Q ss_pred             EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeee
Q 008859           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV   93 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v   93 (551)
                      ||||+|++||+||+  |        ++++|..++.|...                           .||||||+++++++
T Consensus         7 ~lhg~l~~~i~~~~--~--------~~~~~~~~~~~~~~---------------------------~~~y~tv~~~~~~v   49 (758)
T PLN02352          7 FFHGTLEATIFDAT--P--------YTPPFPFNCIFLNG---------------------------KATYVTIKIGNKKV   49 (758)
T ss_pred             ccccceEEEEEEee--e--------hhhcccccccccCC---------------------------CCceEEEEeCCcEE
Confidence            79999999999999  2        44555544333322                           48999999999999


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCCCceeEEEEeecccccccce-eeeEEEccCCCCCCCCCCc
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGEL-ISRWYDIIAPSGSPPKPGA  171 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~-i~~w~~Ll~~~gkp~k~~G  171 (551)
                      +||   +|+.||+|+|+|+|+|||++ ++|+|+|||    |+++||+++||+++|++|+. +++||+|++.+|||++. .
T Consensus        50 ~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~  121 (758)
T PLN02352         50 AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-L  121 (758)
T ss_pred             ecC---CCCCCCccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-C
Confidence            999   77789999999999999999 799999999    69999999999999999976 99999999999999965 8


Q ss_pred             eEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHH
Q 008859          172 SIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAI  251 (551)
Q Consensus       172 ~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI  251 (551)
                      +|+|+|+|+|++++++|.+||++ ++|+|||.++||+|+||+||||||||++++|+|.|.|    .|.+++||++|++||
T Consensus       122 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI  196 (758)
T PLN02352        122 KLRFMLWFRPAELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAI  196 (758)
T ss_pred             EEEEEEEEEEhhhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHH
Confidence            99999999999999999999987 7999999999999999999999999999999999998    677799999999999


Q ss_pred             HhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHH
Q 008859          252 SEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETK  331 (551)
Q Consensus       252 ~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~  331 (551)
                      ++|||+|||++|+|+++++|+|++.++.|.+.+.+|+++|++||+|||+|+||+||+.+|..  .++..|+|.+|+++++
T Consensus       197 ~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~--~~~~~g~m~th~~~~~  274 (758)
T PLN02352        197 EGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLP--IIKNKGVMGTHDEDAF  274 (758)
T ss_pred             HhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCccc--ccccccccccchHHHH
Confidence            99999999999999999999998866555455799999999999999999999999998874  3577899999999999


Q ss_pred             hHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCC--CCcceEEEEceeeccccccCCCcccccccc
Q 008859          332 KFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG--NNRKITAFIGGIDLCDGRYDTPEHRLFRDL  409 (551)
Q Consensus       332 ~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~--~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l  409 (551)
                      ++|++++|+|++||+.+.         ..++.++||||+||||+.+++  ++|+++|||||||||+|||||++|++|++|
T Consensus       275 ~~f~h~~V~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l  345 (758)
T PLN02352        275 AYFKHTKVVCKLCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTL  345 (758)
T ss_pred             hhccCCceEEeecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCccccc
Confidence            999999999999998753         235789999999999998543  689999999999999999999999999999


Q ss_pred             ccc-ccCCCCCCCCC---CCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCCcchhcccccccCCCcccccccCC
Q 008859          410 DTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGR  485 (551)
Q Consensus       410 ~~~-~~~d~~~~~~~---~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  485 (551)
                      ++. |++||+|++|.   .+.++||+||||+||+|+||||+||+.||+||||+++++               +.|+....
T Consensus       346 ~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~---------------~~l~p~~~  410 (758)
T PLN02352        346 NTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNP---------------SVLVPTSS  410 (758)
T ss_pred             ccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCc---------------cccCCccc
Confidence            987 56999999998   367889999999999999999999999999999998875               33344444


Q ss_pred             CCcccCCcccccCCCccccCCCCCccccccCCCCCceEEEEEeeeCCCCcCCCCC--------------CHHHHhhhccC
Q 008859          486 ISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPK--------------SIEDIDDQVYM  551 (551)
Q Consensus       486 ~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~s~~~~p~--------------~~~~a~~~~~~  551 (551)
                      +++++.++            +       .+.++.++|+||||||+|.||+.+||+              .|+.|++.|||
T Consensus       411 ~~~~~~~p------------~-------~~~~~~~~w~VQv~RSid~~sa~~~P~~~~~erSIq~AYi~AIr~AqhfIYI  471 (758)
T PLN02352        411 IRNLVHQP------------G-------SSESNNRNWKVQVYRSIDHVSASHMPRNLPVERSIHEAYVEAIRRAERFIYI  471 (758)
T ss_pred             ccccccCC------------C-------CCcccCCcccceEEEecCccccccCCCCCchhhHHHHHHHHHHHhhhhEEEE
Confidence            44444322            1       012467899999999999999999996              57788899997

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=100.00  E-value=6.9e-91  Score=764.96  Aligned_cols=472  Identities=40%  Similarity=0.652  Sum_probs=412.9

Q ss_pred             CCCCceeEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcC-cccc-cccccccCccCCCcE
Q 008859            6 DSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDG-VRHT-SKIIRKSKIITSDPY   83 (551)
Q Consensus         6 ~~~~~~~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~tsDpY   83 (551)
                      .+++..+.|+||+|+++|+++..+++|+++..+.+..+..+..|....- .|  .+++. ..+. ++....++.+++++|
T Consensus        65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~p~~~~~~~~~~~~~~~~~e~Y  141 (887)
T KOG1329|consen   65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNI-ND--NHDEKPSGPRSSLNSSMEKRKTLENY  141 (887)
T ss_pred             CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccc-cc--cccccCCCccCCcccchhhhhhccch
Confidence            4467778899999999999999999999998877766665543211110 00  00111 1111 111123455678999


Q ss_pred             EEEEECCeeeEEeeecCCC-CCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccC
Q 008859           84 VTVVVPQATVARTRVLKNS-QEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (551)
Q Consensus        84 vtV~l~~~~v~rTrvi~ns-~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~  161 (551)
                      +++.+..+++++|+++.+. .+|.|.++|.+.++|....++|+|++.+.+| +.++|.+++|+..+.+|..+.+|+++++
T Consensus       142 lt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~  221 (887)
T KOG1329|consen  142 LTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILD  221 (887)
T ss_pred             heeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeec
Confidence            9999999999999999986 9999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             CCCCCCCCCceEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCC-CCCC
Q 008859          162 PSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGK-LYKP  240 (551)
Q Consensus       162 ~~gkp~k~~G~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~-~y~~  240 (551)
                      .++++...+..+.++++|++.+.+..|..|+.+++.|.+++.+++++++||.|++|||+|+.++|.|.+.+.+|+ .|.+
T Consensus       222 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~  301 (887)
T KOG1329|consen  222 NDGKPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDG  301 (887)
T ss_pred             cCCccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEch
Confidence            999999888889999999999999999999999999999999999999999999999999999999999999999 7777


Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      ..||+++++||++|||.|||+|||++|+++|+|++..+    .+.+|+++||+||++||+|+|||||+.++...      
T Consensus       302 ~~~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~------  371 (887)
T KOG1329|consen  302 KKYWEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG------  371 (887)
T ss_pred             hhHHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc------
Confidence            99999999999999999999999999999999988733    46999999999999999999999999998753      


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                        .+++++++..+++|++|+|++||+++.++.        .++|+||||+||||..        +|||||+|||+|||||
T Consensus       372 --i~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT  433 (887)
T KOG1329|consen  372 --INSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDT  433 (887)
T ss_pred             --cCchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCC
Confidence              237899999999999999999999987532        4689999999999998        9999999999999999


Q ss_pred             CcccccccccccccCCCCCCCCC-----CCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCCcchhcccccccCC
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW  475 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~-----~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~~~~~~~~~~~~~~  475 (551)
                      ++|+||++|++.|++|||||+|.     ++.++|||||||+||+|.||+|+||++||+||||++...+         ..+
T Consensus       434 ~eH~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K---------~~~  504 (887)
T KOG1329|consen  434 PEHPLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREK---------KPY  504 (887)
T ss_pred             ccccccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhccc---------CCC
Confidence            99999999999999999999997     6789999999999999999999999999999999998752         011


Q ss_pred             CcccccccCCCCcccCCcccccCCCccccCCCCCccccccCCCCCceEEEEEeeeCCCCcCC
Q 008859          476 RDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKG  537 (551)
Q Consensus       476 ~~~~l~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~vqv~rs~~~~s~~~  537 (551)
                       ++.++.+..+++++.|+.                +   .++|++.|+||||||||++|+.|
T Consensus       505 -~~~~p~L~p~~~~~~~~~----------------~---~~~~~e~~~~q~f~si~~gs~~~  546 (887)
T KOG1329|consen  505 -DDSLPLLLPISDITGPSE----------------P---NEEDPESWHVQVFRSIDGGSVAG  546 (887)
T ss_pred             -CccceeecChhhhcCCCC----------------c---cccccccccccceeeccCCcccc
Confidence             566666667777666662                1   37899999999999999999877

>PLN02866 phospholipase D

Probab=100.00  E-value=1.5e-45  Score=415.11  Aligned_cols=209  Identities=35%  Similarity=0.604  Sum_probs=168.9

Q ss_pred             CCCCCcc----cCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCC
Q 008859          203 NAYFPLR----KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRP  278 (551)
Q Consensus       203 ~s~~p~r----~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~  278 (551)
                      .+|.|.|    .||.+++|.||                    +++|++|++||++||++|||++|+|+|+++|+|++.  
T Consensus       321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~--  378 (1068)
T PLN02866        321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH--  378 (1068)
T ss_pred             CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC--
Confidence            5788988    69999999998                    788999999999999999999999999999998542  


Q ss_pred             CCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHh--cCCCcEEEecCCCCcccccccc
Q 008859          279 LPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFF--KHSSVNCVLAPRYASSKLSYFK  356 (551)
Q Consensus       279 ~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~--~~~~v~~~l~p~~~~~~~~~~~  356 (551)
                        .+.+.+|.++|++||++||+||||+||..++...  +.        ...+.+.+  .++||+|...|.+   . .   
T Consensus       379 --D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~--~~--------S~~~k~~L~~lh~gI~V~r~P~~---~-~---  439 (1068)
T PLN02866        379 --DHESSRLDSLLEAKAKQGVQIYILLYKEVALALK--IN--------SVYSKRRLLGIHENVKVLRYPDH---F-S---  439 (1068)
T ss_pred             --CchHHHHHHHHHHHHHCCCEEEEEEECccccccc--cC--------chhhHHHHHHhCCCeEEEecCcc---c-c---
Confidence              1246899999999999999999999999764221  00        11222222  3689998744322   1 0   


Q ss_pred             cccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccc-cCCCCCCCCC------------
Q 008859          357 QQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVF-KDDFHNPTYP------------  423 (551)
Q Consensus       357 ~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~-~~d~~~~~~~------------  423 (551)
                        ...+++|||||+||||+.        +||+||+|||.|||||++|++.+.-...+ ++||.||...            
T Consensus       440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~  509 (1068)
T PLN02866        440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE  509 (1068)
T ss_pred             --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence              124689999999999998        99999999999999999999865333333 5799888642            


Q ss_pred             -CCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCC
Q 008859          424 -IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKL  462 (551)
Q Consensus       424 -~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~  462 (551)
                       ++...||+||||+||+|+||||.||+++|++|||.+++.
T Consensus       510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~  549 (1068)
T PLN02866        510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRN  549 (1068)
T ss_pred             cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcc
Confidence             345678899999999999999999999999999998875

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.97  E-value=3.1e-30  Score=242.07  Aligned_cols=157  Identities=50%  Similarity=0.810  Sum_probs=137.0

Q ss_pred             eEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 008859           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA   91 (551)
Q Consensus        12 ~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~   91 (551)
                      .+||||+|+|+|+||++||+||++++.+++||+++..|......            ..+.+.+...+++||||+|++++.
T Consensus         2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~g~sDPYv~V~l~~~   69 (158)
T cd04015           2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLK------------RPSSHRHVGKITSDPYATVDLAGA   69 (158)
T ss_pred             ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccc------------cccccccCCCCCcCeEEEEEECCe
Confidence            46899999999999999999999999999999987655433210            000112234566999999999998


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCc
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA  171 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G  171 (551)
                      +++||++++++.||+|||+|.|+++++...|+|+|||++.+++++||++.||++++..|+.++.|++|.+..+++.+..+
T Consensus        70 ~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~  149 (158)
T cd04015          70 RVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGA  149 (158)
T ss_pred             EeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCC
Confidence            88999999999999999999999999988999999999999999999999999999999999999999999999998899


Q ss_pred             eEEEEeeee
Q 008859          172 SIQLELKFT  180 (551)
Q Consensus       172 ~L~lsl~f~  180 (551)
                      +|+|+++|+
T Consensus       150 ~l~v~~~f~  158 (158)
T cd04015         150 KIRVSLQFT  158 (158)
T ss_pred             EEEEEEEEC
Confidence            999999995

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>PRK12452 cardiolipin synthetase; Reviewed

Probab=99.96  E-value=2.6e-28  Score=267.85  Aligned_cols=172  Identities=22%  Similarity=0.332  Sum_probs=139.2

Q ss_pred             CCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCC
Q 008859          204 AYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGG  283 (551)
Q Consensus       204 s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~  283 (551)
                      +.+|...||+++++.+|                    ++.|++++++|++||++|+|+.|++       +++.      .
T Consensus       132 ~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~-------~~d~------~  178 (509)
T PRK12452        132 GGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIY-------KSDE------I  178 (509)
T ss_pred             cCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEE-------eCCc------H
Confidence            55788999999999998                    7899999999999999999999965       4443      3


Q ss_pred             chhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCccccccccccccccc
Q 008859          284 DLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTI  363 (551)
Q Consensus       284 ~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~  363 (551)
                      +..+.++|++||+|||+||||+ |+.||..            ......+.++++||+|..+  +|.. ..++   ..+.+
T Consensus       179 g~~i~~aL~~aa~rGV~VRiL~-D~~Gs~~------------~~~~~~~~L~~aGi~v~~f--~P~~-~~~~---~~~~n  239 (509)
T PRK12452        179 GTKVRDALIKKAKDGVIVRFLY-DGLGSNT------------LRRRFLQPMKEAGIEIVEF--DPIF-SAWL---LETVN  239 (509)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEE-ECCCCCC------------CCHHHHHHHHhCCeEEEEe--cCcc-cccc---ccccc
Confidence            5899999999999999999995 9998853            1245667788999998753  2221 1111   23468


Q ss_pred             ccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH
Q 008859          364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP  443 (551)
Q Consensus       364 ~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP  443 (551)
                      +|||||++|||++        +||+||+|+++. |...                         .....+|||+|++++||
T Consensus       240 ~RnHRKi~VIDg~--------ia~~GG~Ni~d~-y~~~-------------------------~~~~~~WrD~~~~i~Gp  285 (509)
T PRK12452        240 YRNHRKIVIVDGE--------IGFTGGLNVGDE-YLGR-------------------------SKKFPVWRDSHLKVEGK  285 (509)
T ss_pred             CCCCCeEEEEcCC--------EEEeCCcccchh-hcCC-------------------------CCCCCCceEEEEEEECH
Confidence            9999999999998        999999999983 4321                         11246899999999999


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q 008859          444 AAYDVLINFEQRWRKATK  461 (551)
Q Consensus       444 aa~dv~~~F~~rW~~~~~  461 (551)
                      +|+++...|.++|+.+++
T Consensus       286 ~V~~l~~~F~~dW~~~~~  303 (509)
T PRK12452        286 ALYKLQAIFLEDWLYASS  303 (509)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999998765

>PRK01642 cls cardiolipin synthetase; Reviewed

Probab=99.95  E-value=2.2e-27  Score=259.69  Aligned_cols=176  Identities=23%  Similarity=0.310  Sum_probs=139.7

Q ss_pred             CCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCC
Q 008859          203 NAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRG  282 (551)
Q Consensus       203 ~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g  282 (551)
                      .+.+|...||+|++|.+|                    ++.|++|+++|++||++|+|+.|++       +++.      
T Consensus       107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~-------~~d~------  153 (483)
T PRK01642        107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIW-------RPDG------  153 (483)
T ss_pred             ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEE-------ccCC------
Confidence            355788899999999998                    7899999999999999999999954       4443      


Q ss_pred             CchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEec-CCCCccccccccccccc
Q 008859          283 GDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA-PRYASSKLSYFKQQIVG  361 (551)
Q Consensus       283 ~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~-p~~~~~~~~~~~~~~~~  361 (551)
                      .+.++.++|++||+|||+||||+ |+.||...           ......+.++..||++..+ |...   ..++   ..+
T Consensus       154 ~g~~i~~aL~~aa~rGV~VriL~-D~~Gs~~~-----------~~~~~~~~L~~~Gi~v~~~~p~~~---~~~~---~~~  215 (483)
T PRK01642        154 LGDQVAEALIAAAKRGVRVRLLY-DSIGSFAF-----------FRSPYPEELRNAGVEVVEFLKVNL---GRVF---RRR  215 (483)
T ss_pred             cHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC-----------CcHHHHHHHHHCCCEEEEecCCCc---cccc---ccc
Confidence            35899999999999999999995 99987641           1233566788899998754 3211   1111   235


Q ss_pred             ccccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEe
Q 008859          362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD  441 (551)
Q Consensus       362 ~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~  441 (551)
                      .++|||||++|||++        +||+||+|+++.+|-+.                         .....+|||+|++++
T Consensus       216 ~n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~-------------------------~~~~~~w~D~~~~i~  262 (483)
T PRK01642        216 LDLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ-------------------------DPGVGQWRDTHVRIE  262 (483)
T ss_pred             cccccCceEEEEcCC--------EEEeCCcccCCHHHhCC-------------------------CCCCCCcEEEEEEEE
Confidence            688999999999998        99999999998333221                         112468999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhcCC
Q 008859          442 GPAAYDVLINFEQRWRKATKL  462 (551)
Q Consensus       442 GPaa~dv~~~F~~rW~~~~~~  462 (551)
                      ||+|+++...|.++|+.+++.
T Consensus       263 Gp~v~~l~~~F~~dW~~~~~~  283 (483)
T PRK01642        263 GPVVTALQLIFAEDWEWETGE  283 (483)
T ss_pred             cHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999987653

>PRK11263 cardiolipin synthase 2; Provisional

Probab=99.91  E-value=9e-24  Score=226.11  Aligned_cols=167  Identities=22%  Similarity=0.310  Sum_probs=131.1

Q ss_pred             CcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchh
Q 008859          207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT  286 (551)
Q Consensus       207 p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~  286 (551)
                      +.+.||+|+++.||                    ++.|++++++|++||++|+|++|++.       ++.      .+..
T Consensus         3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~------~g~~   49 (411)
T PRK11263          3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILF-------EDK------VGKQ   49 (411)
T ss_pred             cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEe-------cCc------hHHH
Confidence            56789999999998                    78999999999999999999999653       232      2589


Q ss_pred             HHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccC
Q 008859          287 LGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTH  366 (551)
Q Consensus       287 l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~h  366 (551)
                      |.++|++||+|||+|+||+ |..+|...            +....+.|.++||++...  .|..  .++ ......+.++
T Consensus        50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~--~p~~--~~~-~~~~~~~~R~  111 (411)
T PRK11263         50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYF--DPRP--RLL-GMRTNLFRRM  111 (411)
T ss_pred             HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEe--CCcc--ccc-ccccccccCC
Confidence            9999999999999999996 98876531            345677788999998753  1211  111 1112234599


Q ss_pred             ccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHH
Q 008859          367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY  446 (551)
Q Consensus       367 HqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~  446 (551)
                      |+|++|||++        +||+||+|+++.++.                ++           ...+|+|+|++|+||+|.
T Consensus       112 HrKiiVIDg~--------~a~vGg~N~~~~~~~----------------~~-----------g~~~w~D~~v~i~Gp~V~  156 (411)
T PRK11263        112 HRKIVVIDGR--------IAFVGGINYSADHLS----------------DY-----------GPEAKQDYAVEVEGPVVA  156 (411)
T ss_pred             cceEEEEcCC--------EEEEcCeEchHhhcc----------------cc-----------CCCCceEEEEEEECHHHH
Confidence            9999999998        999999999973332                11           134799999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 008859          447 DVLINFEQRWRKA  459 (551)
Q Consensus       447 dv~~~F~~rW~~~  459 (551)
                      ++...|.+.|...
T Consensus       157 ~l~~~f~~~w~~~  169 (411)
T PRK11263        157 DIHQFELEALPGQ  169 (411)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999999743

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.91  E-value=1.3e-23  Score=193.90  Aligned_cols=127  Identities=24%  Similarity=0.478  Sum_probs=114.7

Q ss_pred             EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee
Q 008859           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT   92 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~   92 (551)
                      ..+-..|.|+|+||++||.+                                               .+|||+|.|++++
T Consensus         7 ~R~~~sL~v~V~EAk~Lp~~-----------------------------------------------~~~Y~~i~Ld~~~   39 (146)
T cd04013           7 RRTENSLKLWIIEAKGLPPK-----------------------------------------------KRYYCELCLDKTL   39 (146)
T ss_pred             eEEEEEEEEEEEEccCCCCc-----------------------------------------------CCceEEEEECCEE
Confidence            35678999999999999853                                               4799999999999


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEE-ecCCC----CCceeEEEEeecccccccceeeeEEEccCCCCCC-
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVF----GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSP-  166 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vk-d~d~~----g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp-  166 (551)
                      ++||+++.++.||.|+|+|+|+++|+.+.|+|+|+ +++..    ++++||++.||++++..|+.+++||||++.++++ 
T Consensus        40 vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~  119 (146)
T cd04013          40 YARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGK  119 (146)
T ss_pred             EEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCc
Confidence            99999999999999999999999999999999995 45544    5799999999999999999999999999999887 


Q ss_pred             ------CCCCceEEEEeeeeccCCCC
Q 008859          167 ------PKPGASIQLELKFTPCDKNP  186 (551)
Q Consensus       167 ------~k~~G~L~lsl~f~p~~~~~  186 (551)
                            .+..++|+|+++|.++...|
T Consensus       120 ~~~~~~~~~~~~lrik~rf~~~~~lP  145 (146)
T cd04013         120 SGGKEGKGESPSIRIKARYQSTRVLP  145 (146)
T ss_pred             cccccccCCCCEEEEEEEEEEeeeCC
Confidence                  67789999999999987665

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.90  E-value=7.6e-23  Score=183.57  Aligned_cols=117  Identities=23%  Similarity=0.491  Sum_probs=104.7

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|++.+ ++.                                          +||||+|.++++++ ||
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~------------------------------------------sDPYv~i~lg~~~~-kT   37 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTR------------------------------------------MDPYCRIRVGHAVY-ET   37 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCC------------------------------------------CCceEEEEECCEEE-Ee
Confidence            89999999999998776 443                                          99999999998875 99


Q ss_pred             eecCC-CCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecc-cccccceeeeEEEccCCCCCCCCCCceE
Q 008859           97 RVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAH-TIATGELISRWYDIIAPSGSPPKPGASI  173 (551)
Q Consensus        97 rvi~n-s~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~-~l~~g~~i~~w~~Ll~~~gkp~k~~G~L  173 (551)
                      +|+.+ +.||+|||+|.|+|++....|.|+|+|.|.++ +++||.+.||+. .+..|+.++.||+|.+.++++  ..|+|
T Consensus        38 ~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i  115 (121)
T cd04016          38 PTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMI  115 (121)
T ss_pred             EEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEE
Confidence            99876 89999999999999988788999999999998 799999999995 688898899999997766654  56999


Q ss_pred             EEEeee
Q 008859          174 QLELKF  179 (551)
Q Consensus       174 ~lsl~f  179 (551)
                      +|+|+|
T Consensus       116 ~l~l~y  121 (121)
T cd04016         116 NLVFSY  121 (121)
T ss_pred             EEEEeC
Confidence            999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.85  E-value=8.2e-21  Score=171.57  Aligned_cols=114  Identities=24%  Similarity=0.374  Sum_probs=103.0

Q ss_pred             EEEEEEEeec---CCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859           19 LDLKIIRARR---LPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (551)
Q Consensus        19 L~v~I~eA~~---L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r   95 (551)
                      |+|+|++|++   |+.+|..+.                                          +||||+|.+++++ .|
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~------------------------------------------sDPYv~i~~g~~~-~r   38 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGS------------------------------------------TDAYCVAKYGPKW-VR   38 (126)
T ss_pred             eEEEEEEeECCccccccccCCC------------------------------------------CCeeEEEEECCEE-eE
Confidence            8999999999   777665543                                          9999999998876 59


Q ss_pred             eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCC-------CCceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~-------g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k  168 (551)
                      |++++++.||+|||+|.|++.++...|+|+|||.+.+       ++++||++.||++.+..+..++.||+|.+.++++.+
T Consensus        39 Tk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~  118 (126)
T cd08379          39 TRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK  118 (126)
T ss_pred             cCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCcc
Confidence            9999999999999999999999888999999999987       699999999999999999999999999888777788


Q ss_pred             CCceEEE
Q 008859          169 PGASIQL  175 (551)
Q Consensus       169 ~~G~L~l  175 (551)
                      ..|+|++
T Consensus       119 ~~g~l~~  125 (126)
T cd08379         119 KMGELEC  125 (126)
T ss_pred             CCcEEEe
Confidence            8899875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.84  E-value=2.1e-20  Score=168.50  Aligned_cols=117  Identities=21%  Similarity=0.493  Sum_probs=102.2

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv   98 (551)
                      +.|+|++|++|++++..+.                                          +||||+|.+.+.+ .||++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~------------------------------------------~dpYv~v~l~~~~-~kT~v   37 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGT------------------------------------------NDAYVIIQLGKEK-YSTSV   37 (126)
T ss_pred             CEEEEEECcCCcCCCCCcC------------------------------------------CCceEEEEECCee-eeeee
Confidence            4799999999998876443                                          8999999998766 69999


Q ss_pred             cCCCCCCeEeeEEEEeecC------CCCeEEEEEEecCCCC-CceeEEEEeeccccc--ccceeeeEEEccCCCCCCCCC
Q 008859           99 LKNSQEPVWNEHFNIPLAH------PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA--TGELISRWYDIIAPSGSPPKP  169 (551)
Q Consensus        99 i~ns~nP~WnE~F~i~vah------~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~--~g~~i~~w~~Ll~~~gkp~k~  169 (551)
                      ++++.||+|||+|.|.+..      ....|.|+|+|.+.++ +++||++.|+++++.  .+.....||+|.+..+++.+.
T Consensus        38 ~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~  117 (126)
T cd08682          38 KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKE  117 (126)
T ss_pred             ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccc
Confidence            9999999999999999877      3567999999999998 899999999999988  677789999997766666667


Q ss_pred             CceEEEEee
Q 008859          170 GASIQLELK  178 (551)
Q Consensus       170 ~G~L~lsl~  178 (551)
                      .|+|+|++|
T Consensus       118 ~Gei~l~~~  126 (126)
T cd08682         118 RGEIEVDIQ  126 (126)
T ss_pred             cceEEEEeC
Confidence            899999885

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=4.5e-20  Score=165.07  Aligned_cols=120  Identities=26%  Similarity=0.391  Sum_probs=107.8

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr   97 (551)
                      .|.|+|++|++|+++|..+.                                          +||||++.+.+..+.||+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~~~kT~   38 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGT------------------------------------------SDPYVKFKYGGKTVYKSK   38 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCC------------------------------------------CCCeEEEEECCEEEEEee
Confidence            38899999999998876543                                          899999999887789999


Q ss_pred             ecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEEE
Q 008859           98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE  176 (551)
Q Consensus        98 vi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~ls  176 (551)
                      ++.++.||+|||+|.|.+......|.|+|||.+.++ +++||.+.+++.++..++..+.|++|.+..+.  +..|+|+|.
T Consensus        39 ~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~  116 (121)
T cd04042          39 TIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLV  116 (121)
T ss_pred             eccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEE
Confidence            999999999999999999887788999999999996 89999999999999999999999999766552  467999999


Q ss_pred             eeeec
Q 008859          177 LKFTP  181 (551)
Q Consensus       177 l~f~p  181 (551)
                      ++|+|
T Consensus       117 ~~~~~  121 (121)
T cd04042         117 VTLTP  121 (121)
T ss_pred             EEECC
Confidence            99976

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.83  E-value=1.4e-19  Score=163.38  Aligned_cols=121  Identities=21%  Similarity=0.412  Sum_probs=103.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r   95 (551)
                      +..|.|+|++|++|+.++                                             ++||||+|.+.+..++|
T Consensus         3 ~~~L~V~Vi~A~~L~~~~---------------------------------------------~~DPYv~v~l~~~~~~k   37 (126)
T cd08400           3 VRSLQLNVLEAHKLPVKH---------------------------------------------VPHPYCVISLNEVKVAR   37 (126)
T ss_pred             eeEEEEEEEEeeCCCCCC---------------------------------------------CCCeeEEEEECCEeEEE
Confidence            467999999999998632                                             28999999999888889


Q ss_pred             eeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceE
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI  173 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L  173 (551)
                      |++. ++.||.|||+|.|.+..+. ..++|.|+|.+.++ +++||.+.||+.++..|...+.||+|....+++.+..|+|
T Consensus        38 T~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i  116 (126)
T cd08400          38 TKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSL  116 (126)
T ss_pred             eecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEE
Confidence            9985 5899999999999976553 56899999999887 8999999999999999999999999977654455678999


Q ss_pred             EEEeeeecc
Q 008859          174 QLELKFTPC  182 (551)
Q Consensus       174 ~lsl~f~p~  182 (551)
                      +|+|+|.+.
T Consensus       117 ~l~l~~~~~  125 (126)
T cd08400         117 RIRARYSHE  125 (126)
T ss_pred             EEEEEEEcc
Confidence            999999863

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.81  E-value=3.8e-19  Score=159.60  Aligned_cols=119  Identities=25%  Similarity=0.404  Sum_probs=101.7

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv   98 (551)
                      |.|+|++|++|+.++....                                         .+||||.|.+.+..++||++
T Consensus         2 l~v~v~~a~~L~~~~~~~g-----------------------------------------~sDpYv~v~l~~~~~~kT~v   40 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNK-----------------------------------------MRDCYCTVNLDQEEVFRTKT   40 (121)
T ss_pred             eEEEEEEccCCCCCCCCCC-----------------------------------------CcCcEEEEEECCccEEEeeE
Confidence            7899999999998753211                                         28999999998877899999


Q ss_pred             cCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEEEe
Q 008859           99 LKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLEL  177 (551)
Q Consensus        99 i~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~lsl  177 (551)
                      ++++.||+|||+|.|.+++....|.|.|+|.+.++ +++||.+.++++++..+...+.||+|... +...+..|+|++++
T Consensus        41 ~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~~G~i~l~~  119 (121)
T cd08401          41 VEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV-DADSEVQGKVHLEL  119 (121)
T ss_pred             EECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc-CCCCcccEEEEEEE
Confidence            99999999999999999987778999999999997 89999999999999988889999999532 22233579999998


Q ss_pred             ee
Q 008859          178 KF  179 (551)
Q Consensus       178 ~f  179 (551)
                      +|
T Consensus       120 ~~  121 (121)
T cd08401         120 RL  121 (121)
T ss_pred             EC
Confidence            75

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=5.7e-19  Score=164.42  Aligned_cols=121  Identities=26%  Similarity=0.419  Sum_probs=104.8

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv   98 (551)
                      |.|+|++|++|+.+|.++.                                          +||||+|.+++.. .||++
T Consensus         2 L~V~Vi~A~~L~~~d~~g~------------------------------------------sDPYV~v~l~~~~-~kTk~   38 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRV------------------------------------------PEVFVKAQLGNQV-LRTRP   38 (150)
T ss_pred             EEEEEEEeECCCCCCCCCC------------------------------------------CCeEEEEEECCEE-eeeEe
Confidence            8999999999999887654                                          8999999999855 69999


Q ss_pred             cCC-CCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeeccccccc----ceeeeEEEccCCCC-----CC
Q 008859           99 LKN-SQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPSG-----SP  166 (551)
Q Consensus        99 i~n-s~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g----~~i~~w~~Ll~~~g-----kp  166 (551)
                      +.+ +.||+|||+|.|.++++. +.|.|+|+|.+..+ +++||++.||++++..+    ..+++||+|.+..+     ++
T Consensus        39 ~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~  118 (150)
T cd04019          39 SQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKK  118 (150)
T ss_pred             ccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccccccc
Confidence            977 699999999999998764 57899999999876 89999999999998753    55789999987765     66


Q ss_pred             CCCCceEEEEeeeecc
Q 008859          167 PKPGASIQLELKFTPC  182 (551)
Q Consensus       167 ~k~~G~L~lsl~f~p~  182 (551)
                      .+..|+|+|+++|.+.
T Consensus       119 ~k~~g~l~l~i~~~~~  134 (150)
T cd04019         119 RKFASRIHLRLCLDGG  134 (150)
T ss_pred             CcccccEEEEEEecCc
Confidence            6788999999999754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.80  E-value=3.1e-19  Score=158.63  Aligned_cols=116  Identities=26%  Similarity=0.507  Sum_probs=100.7

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|++++.++.                                          +||||+|++.+.. .||
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~kT   37 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDK------------------------------------------QDPYCVLRIGGVT-KKT   37 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCC------------------------------------------CCceEEEEECCCc-ccc
Confidence            789999999999999886554                                          8999999998744 799


Q ss_pred             eecCC-CCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEE
Q 008859           97 RVLKN-SQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ  174 (551)
Q Consensus        97 rvi~n-s~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~  174 (551)
                      +++.+ +.||+|||.|.|.+.++ ...|.|+|||.+..++++||.+.+++.++..+.....|++|.. ++   +..|+|+
T Consensus        38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~---~~~G~i~  113 (118)
T cd08681          38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KG---RYAGEVY  113 (118)
T ss_pred             ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CC---cEeeEEE
Confidence            98865 78999999999999875 4579999999998889999999999999988878899999953 33   3569999


Q ss_pred             EEeee
Q 008859          175 LELKF  179 (551)
Q Consensus       175 lsl~f  179 (551)
                      |+|+|
T Consensus       114 l~l~f  118 (118)
T cd08681         114 LELTF  118 (118)
T ss_pred             EEEEC
Confidence            99987

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=1.3e-18  Score=156.10  Aligned_cols=98  Identities=24%  Similarity=0.446  Sum_probs=84.9

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeeccccccc-----cee
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG-----ELI  153 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g-----~~i  153 (551)
                      +||||+|.+.+. .+||++++++.||+|||+|.|.+.+. ...|.|+|||.+.+++++||++.++++++..+     ...
T Consensus        17 ~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~   95 (121)
T cd08378          17 NDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLA   95 (121)
T ss_pred             CCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCC
Confidence            899999999875 57999999999999999999999874 56799999999988899999999999998753     246


Q ss_pred             eeEEEccCCCCCCCCCCceEEEEeeee
Q 008859          154 SRWYDIIAPSGSPPKPGASIQLELKFT  180 (551)
Q Consensus       154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f~  180 (551)
                      ..||+|.+..+  .+..|+|+|+++|-
T Consensus        96 ~~W~~L~~~~~--~~~~G~i~l~~~~~  120 (121)
T cd08378          96 PQWYRLEDKKG--GRVGGELMLAVWFG  120 (121)
T ss_pred             cceEEccCCCC--CccceEEEEEEEec
Confidence            78999976654  35679999999983

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.78  E-value=1.7e-18  Score=154.72  Aligned_cols=121  Identities=30%  Similarity=0.452  Sum_probs=102.9

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-eeeEE
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR   95 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~-~~v~r   95 (551)
                      |.|.|+|++|++|++++..+.                                         .+||||+|.+.+ ..++|
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~-----------------------------------------~~dpyv~v~~~~~~~~~k   40 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGG-----------------------------------------TVDPYVTFSISNRRELAR   40 (124)
T ss_pred             eEEEEEEEcccCCCcccccCC-----------------------------------------CCCCeEEEEECCCCcceE
Confidence            789999999999997654321                                         279999999988 57789


Q ss_pred             eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEE
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQ  174 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~  174 (551)
                      |++++++.||.|||.|.|.+......|.|+|+|.+.++ +++||.+.+++.++..+...+.|...+..++++   .|+|+
T Consensus        41 T~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~---~G~i~  117 (124)
T cd04044          41 TKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKP---VGELN  117 (124)
T ss_pred             eeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCcc---ceEEE
Confidence            99999999999999999999866778999999999886 899999999999999877776555444555564   59999


Q ss_pred             EEeeeec
Q 008859          175 LELKFTP  181 (551)
Q Consensus       175 lsl~f~p  181 (551)
                      ++++|.|
T Consensus       118 ~~l~~~p  124 (124)
T cd04044         118 YDLRFFP  124 (124)
T ss_pred             EEEEeCC
Confidence            9999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=1.6e-18  Score=156.39  Aligned_cols=120  Identities=23%  Similarity=0.344  Sum_probs=101.2

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr   97 (551)
                      .|.|+|++|++|++++..+.                                          +||||+|.+.+++ .||+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~rT~   37 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGS------------------------------------------SSAYVELDFDGQK-KRTR   37 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEE-ecce
Confidence            48999999999998775432                                          8999999999876 5999


Q ss_pred             ecCCCCCCeEeeEEEEeecCCC----CeEEEEEEecCCC--CCceeEEEEeeccccc-ccceeeeEEEccCCCCCCCCCC
Q 008859           98 VLKNSQEPVWNEHFNIPLAHPL----SNLEIQVKDDDVF--GAQIIGTAAIPAHTIA-TGELISRWYDIIAPSGSPPKPG  170 (551)
Q Consensus        98 vi~ns~nP~WnE~F~i~vah~~----~~l~f~Vkd~d~~--g~~lIG~v~Ipl~~l~-~g~~i~~w~~Ll~~~gkp~k~~  170 (551)
                      +++++.||.|||+|.|.+.++.    ..|.|+|||.+.+  ++++||++.|+++++. .++....||+|... ++..+..
T Consensus        38 v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~  116 (127)
T cd04022          38 TKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVR  116 (127)
T ss_pred             eEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCcc
Confidence            9999999999999999998653    4699999999887  4899999999999998 57778899999543 3333467


Q ss_pred             ceEEEEeeeec
Q 008859          171 ASIQLELKFTP  181 (551)
Q Consensus       171 G~L~lsl~f~p  181 (551)
                      |+|+|++.++.
T Consensus       117 G~l~l~~~~~~  127 (127)
T cd04022         117 GEIGLKVYITD  127 (127)
T ss_pred             EEEEEEEEEcC
Confidence            99999999863

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.78  E-value=3.1e-18  Score=154.40  Aligned_cols=105  Identities=20%  Similarity=0.344  Sum_probs=91.4

Q ss_pred             CCcEEEEEECC-eeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEE
Q 008859           80 SDPYVTVVVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY  157 (551)
Q Consensus        80 sDpYvtV~l~~-~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~  157 (551)
                      +||||.+++.. ....||++++++.||+|||.|.|.+.+....|.|+|+|.+.++ +++||.+.+++.++..+.....||
T Consensus        18 ~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~   97 (126)
T cd08678          18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIF   97 (126)
T ss_pred             cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEE
Confidence            89999999974 3457999999999999999999999876778999999999988 899999999999999888889999


Q ss_pred             EccCCCCCCCCCCceEEEEeeeeccCC
Q 008859          158 DIIAPSGSPPKPGASIQLELKFTPCDK  184 (551)
Q Consensus       158 ~Ll~~~gkp~k~~G~L~lsl~f~p~~~  184 (551)
                      +|....++..+..|+|.++++|.+.++
T Consensus        98 ~L~~~~~~~~~~~G~l~l~~~~~~~~~  124 (126)
T cd08678          98 PLQGRPYEGDSVSGSITVEFLFMEPAE  124 (126)
T ss_pred             EecCCCCCCCCcceEEEEEEEEecccc
Confidence            996554433456899999999988653

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.78  E-value=3.6e-18  Score=151.73  Aligned_cols=117  Identities=31%  Similarity=0.544  Sum_probs=101.7

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|++++..+.                                          +||||+|.+.+.. +||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~~T   37 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGK------------------------------------------SDPFCVLELVNAR-LQT   37 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCC------------------------------------------CCcEEEEEECCEe-eec
Confidence            789999999999998876553                                          8999999998766 699


Q ss_pred             eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEE
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~l  175 (551)
                      ++++++.||.|||+|.|++.+....+.|+|+|.+.++ +++||++.+++.++..+.  ..|++|.+..++ .+..|+|.+
T Consensus        38 ~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~-~~~~G~i~l  114 (119)
T cd08377          38 HTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLR-TRAKGSILL  114 (119)
T ss_pred             ceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCC-CceeeEEEE
Confidence            9999999999999999999876778999999999876 899999999999998664  579999765443 336899999


Q ss_pred             Eeee
Q 008859          176 ELKF  179 (551)
Q Consensus       176 sl~f  179 (551)
                      +|+|
T Consensus       115 ~~~~  118 (119)
T cd08377         115 EMDV  118 (119)
T ss_pred             EEEe
Confidence            9987

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.77  E-value=7.1e-18  Score=151.17  Aligned_cols=118  Identities=25%  Similarity=0.508  Sum_probs=100.7

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr   97 (551)
                      .|.|+|++|++|+++|..+.                                          +||||+|.+.+..++||+
T Consensus         1 ~l~v~vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT~   38 (121)
T cd04054           1 SLYIRIVEGKNLPAKDITGS------------------------------------------SDPYCIVKVDNEVIIRTA   38 (121)
T ss_pred             CEEEEEEEeeCCcCCCCCCC------------------------------------------CCceEEEEECCEeeeeee
Confidence            38899999999999886553                                          899999999988789999


Q ss_pred             ecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeeccccccc-ceeeeEEEccCCCCCCCCCCceEEE
Q 008859           98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG-ELISRWYDIIAPSGSPPKPGASIQL  175 (551)
Q Consensus        98 vi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g-~~i~~w~~Ll~~~gkp~k~~G~L~l  175 (551)
                      +++++.||.|||.|.|++.+....+.|+|+|.+.++ +++||++.++++++..+ ...+.|++|....+. .+..|+|++
T Consensus        39 v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l  117 (121)
T cd04054          39 TVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHL  117 (121)
T ss_pred             eEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEE
Confidence            999999999999999999887778999999999998 89999999999998764 458899999543222 235699988


Q ss_pred             Eee
Q 008859          176 ELK  178 (551)
Q Consensus       176 sl~  178 (551)
                      +++
T Consensus       118 ~~~  120 (121)
T cd04054         118 ELS  120 (121)
T ss_pred             EEE
Confidence            875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]

Probab=99.77  E-value=1.6e-17  Score=179.49  Aligned_cols=168  Identities=24%  Similarity=0.372  Sum_probs=131.0

Q ss_pred             ccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHH
Q 008859          209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG  288 (551)
Q Consensus       209 r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~  288 (551)
                      ..++.++++.++                    .+.|..+.++|++|++.|+++.|.+       .++.      .+..+.
T Consensus        57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~-------~~d~------~~~~i~  103 (438)
T COG1502          57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIW-------QDDE------LGREIL  103 (438)
T ss_pred             CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEE-------eCCh------hHHHHH
Confidence            578889998887                    6889999999999999999998853       3333      358999


Q ss_pred             HHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcccCCcHHHHhHhcCCCc-EEEe-cCCCCcccccccccccccccccC
Q 008859          289 ELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSV-NCVL-APRYASSKLSYFKQQIVGTIFTH  366 (551)
Q Consensus       289 elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v-~~~l-~p~~~~~~~~~~~~~~~~~~~~h  366 (551)
                      +.|.++|++||+||+|+ |+.++...           ........++++++ .+.. .|..+.   .   ......+.++
T Consensus       104 ~~l~~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~---~---~~~~~~~~r~  165 (438)
T COG1502         104 DALIEAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPR---P---LRFRRLNRRL  165 (438)
T ss_pred             HHHHHHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCcccc---c---chhhhhhccc
Confidence            99999999999999997 88876321           12355677788898 5443 232221   1   1133567899


Q ss_pred             ccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHH
Q 008859          367 HQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY  446 (551)
Q Consensus       367 HqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~  446 (551)
                      |+|++|||+.        ++|+||+|+.+.++...                          ....+|+|+|++++||+|.
T Consensus       166 H~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~  211 (438)
T COG1502         166 HRKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVA  211 (438)
T ss_pred             cceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHH
Confidence            9999999998        99999999999655420                          0134899999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 008859          447 DVLINFEQRWRKATK  461 (551)
Q Consensus       447 dv~~~F~~rW~~~~~  461 (551)
                      ++..+|.++|+....
T Consensus       212 ~l~~~f~~~w~~~~~  226 (438)
T COG1502         212 DLARLFIQDWNLESG  226 (438)
T ss_pred             HHHHHHHHHhhhccC
Confidence            999999999998744

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.76  E-value=7.6e-18  Score=149.82  Aligned_cols=120  Identities=26%  Similarity=0.444  Sum_probs=99.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|+++|....                                    .....++||||+|.+.+ ..+||
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~------------------------------------~~~~g~~dPyv~v~~~~-~~~kT   43 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVG------------------------------------GLVKGKSDPYVIVRVGA-QTFKS   43 (121)
T ss_pred             CeEEEEEEEccCCcccccccc------------------------------------cCCCCCcCCEEEEEECC-EeEEc
Confidence            789999999999998775320                                    00001389999999988 55899


Q ss_pred             eecCCCCCCeEeeEEEEeecC-CCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEE
Q 008859           97 RVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah-~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~l  175 (551)
                      ++++++.||+|||+|.|.+.. ....|.|+|+|.+.+++++||.+.+++.++..+...+.||+|.+.      ..|+|++
T Consensus        44 ~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~  117 (121)
T cd08391          44 KVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHL  117 (121)
T ss_pred             cccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEE
Confidence            999999999999999999875 356899999999988889999999999999988788999999432      4699999


Q ss_pred             Eeee
Q 008859          176 ELKF  179 (551)
Q Consensus       176 sl~f  179 (551)
                      +++|
T Consensus       118 ~~~~  121 (121)
T cd08391         118 KLEW  121 (121)
T ss_pred             EEeC
Confidence            9875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.76  E-value=1.5e-17  Score=151.17  Aligned_cols=127  Identities=24%  Similarity=0.453  Sum_probs=103.5

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~   94 (551)
                      +-|.|.|+|++|++|+++|..++.   -|.                 +            ....++||||+|.+.+..++
T Consensus         2 ~~g~l~V~v~~a~~L~~~d~~~~~---~~~-----------------~------------~~~g~~dpyv~v~~~~~~~~   49 (132)
T cd04014           2 FTGTLKIKICEAVDLKPTDWSTRH---AVP-----------------K------------KGSQLLDPYVSIDVDDTHIG   49 (132)
T ss_pred             cceEEEEEEEEecCCCCCCchhhh---ccc-----------------c------------cCccCcCcEEEEEECCEEEe
Confidence            468999999999999987753210   000                 0            00113899999999998889


Q ss_pred             EeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccc--cceeeeEEEccCCCCCCCCCCc
Q 008859           95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT--GELISRWYDIIAPSGSPPKPGA  171 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~--g~~i~~w~~Ll~~~gkp~k~~G  171 (551)
                      +|++++++.||.|||+|.|++. ....+.|.|+|.+.++ +++||.+.++++++..  +...+.|++|.        +.|
T Consensus        50 kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G  120 (132)
T cd04014          50 KTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQG  120 (132)
T ss_pred             EEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCc
Confidence            9999999999999999999997 5568999999999887 7999999999999987  67789999992        459


Q ss_pred             eEEEEeeeecc
Q 008859          172 SIQLELKFTPC  182 (551)
Q Consensus       172 ~L~lsl~f~p~  182 (551)
                      +|+|+++|...
T Consensus       121 ~l~l~~~~~~~  131 (132)
T cd04014         121 KLHVKIELKGS  131 (132)
T ss_pred             EEEEEEEEecC
Confidence            99999998653

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=1e-17  Score=150.65  Aligned_cols=120  Identities=22%  Similarity=0.419  Sum_probs=100.9

Q ss_pred             eEEEEEEEEeecCCCCCC--CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859           17 GDLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~   94 (551)
                      |.|.|+|++|++|++++.  .+.                                          +||||.|.+.+.. .
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~   37 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------------------SDPYAILSVGAQR-F   37 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCC------------------------------------------cCCeEEEEECCEE-E
Confidence            789999999999998775  332                                          8999999997765 7


Q ss_pred             EeeecCCCCCCeEeeEEEEeecC-CCCeEEEEEEecCCCC-CceeEEEEeeccccc---ccceeeeEEEccCCC-CCCCC
Q 008859           95 RTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA---TGELISRWYDIIAPS-GSPPK  168 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~vah-~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~---~g~~i~~w~~Ll~~~-gkp~k  168 (551)
                      ||++++++.||.|||+|.|++.. ....|.|+|||.+.++ +++||.+.|++.++.   ..+....||+|.+.. ++...
T Consensus        38 kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~  117 (128)
T cd04024          38 KTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV  117 (128)
T ss_pred             ecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCcccc
Confidence            99999999999999999999987 4668999999999986 899999999999987   334568999996553 23344


Q ss_pred             CCceEEEEeee
Q 008859          169 PGASIQLELKF  179 (551)
Q Consensus       169 ~~G~L~lsl~f  179 (551)
                      ..|+|+|+++|
T Consensus       118 ~~G~i~l~~~~  128 (128)
T cd04024         118 VSGEIHLQFSW  128 (128)
T ss_pred             ccceEEEEEEC
Confidence            68999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.75  E-value=1.3e-17  Score=151.37  Aligned_cols=120  Identities=22%  Similarity=0.395  Sum_probs=100.6

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe------
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA------   91 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~------   91 (551)
                      .|.|+|++|++|+++|..+.                                          +||||+|.+.+.      
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~------------------------------------------~Dpyv~v~~~~~~~~~~~   38 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGA------------------------------------------SDPYVKISLYDPDGNGEI   38 (133)
T ss_pred             CEEEEEEEeECCCcccCCCC------------------------------------------cCcEEEEEEECCCCCCcc
Confidence            48999999999998886553                                          899999999764      


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccce------eeeEEEccCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL------ISRWYDIIAPSG  164 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~------i~~w~~Ll~~~g  164 (551)
                      ...||++++++.||.|||+|.|.+......|.|+|+|.+.++ +++||.+.|++.++..+..      ...||+|.... 
T Consensus        39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~-  117 (133)
T cd04033          39 DSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRS-  117 (133)
T ss_pred             cceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecC-
Confidence            246999999999999999999999876778999999999998 8999999999999986543      45899985432 


Q ss_pred             CCCCCCceEEEEeeee
Q 008859          165 SPPKPGASIQLELKFT  180 (551)
Q Consensus       165 kp~k~~G~L~lsl~f~  180 (551)
                      +..+..|+|+|++.|.
T Consensus       118 ~~~~~~G~l~~~~~~~  133 (133)
T cd04033         118 SKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCcceeEEEEEEeeC
Confidence            2234689999999984

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.75  E-value=1.8e-17  Score=147.85  Aligned_cols=113  Identities=27%  Similarity=0.499  Sum_probs=96.5

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeEEe
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVART   96 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~rT   96 (551)
                      |.|+|++|++|++.+..+.                                          +||||+|.+.+  ....||
T Consensus         2 L~V~vi~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~kT   39 (119)
T cd04036           2 LTVRVLRATNITKGDLLST------------------------------------------PDCYVELWLPTASDEKKRT   39 (119)
T ss_pred             eEEEEEEeeCCCccCCCCC------------------------------------------CCcEEEEEEcCCCCccCcc
Confidence            7899999999998775443                                          89999999964  456799


Q ss_pred             eecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEE
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~l  175 (551)
                      ++++++.||+|||+|.|.+.... ..|.|+|||.+.+++++||++.+++.++..|.....|++|.. .     ..|+|++
T Consensus        40 ~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~-----~~g~l~~  113 (119)
T cd04036          40 KTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-Q-----GKEELEV  113 (119)
T ss_pred             ceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-C-----CCceEEE
Confidence            99999999999999999987763 358999999998888999999999999999999999999832 2     3588887


Q ss_pred             Eeee
Q 008859          176 ELKF  179 (551)
Q Consensus       176 sl~f  179 (551)
                      ++.+
T Consensus       114 ~~~~  117 (119)
T cd04036         114 EFLL  117 (119)
T ss_pred             EEEe
Confidence            7754

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.74  E-value=4.2e-17  Score=144.49  Aligned_cols=112  Identities=26%  Similarity=0.388  Sum_probs=98.8

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv   98 (551)
                      |.|+|++|++|+.++..+.                                          +||||++.+.+.. ++|++
T Consensus         2 ~~V~v~~a~~L~~~~~~~~------------------------------------------~dPyv~v~~~~~~-~kT~v   38 (116)
T cd08376           2 VTIVLVEGKNLPPMDDNGL------------------------------------------SDPYVKFRLGNEK-YKSKV   38 (116)
T ss_pred             EEEEEEEEECCCCCCCCCC------------------------------------------CCcEEEEEECCEe-Eeccc
Confidence            7899999999998876443                                          8999999998755 79999


Q ss_pred             cCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEEE
Q 008859           99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLE  176 (551)
Q Consensus        99 i~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~ls  176 (551)
                      ++++.||.|||+|.|.+..+ ...|.|+|+|.+.++ +++||.+.+++.++..++..+.|++|.+       ..|+|++.
T Consensus        39 ~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~  111 (116)
T cd08376          39 CSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLL  111 (116)
T ss_pred             ccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEE
Confidence            99999999999999998876 567999999999987 8999999999999998889999999932       24999999


Q ss_pred             eeee
Q 008859          177 LKFT  180 (551)
Q Consensus       177 l~f~  180 (551)
                      +.|+
T Consensus       112 ~~~~  115 (116)
T cd08376         112 LTLT  115 (116)
T ss_pred             EEec
Confidence            8875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.74  E-value=2.6e-17  Score=147.48  Aligned_cols=116  Identities=27%  Similarity=0.431  Sum_probs=98.1

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv   98 (551)
                      |.|+|++|++|+.++..+.                                          +||||+|++.+.. .+|++
T Consensus         2 L~v~vi~a~~L~~~d~~~~------------------------------------------~DPyv~v~~~~~~-~kT~v   38 (123)
T cd04025           2 LRCHVLEARDLAPKDRNGT------------------------------------------SDPFVRVFYNGQT-LETSV   38 (123)
T ss_pred             EEEEEEEeeCCCCCCCCCC------------------------------------------cCceEEEEECCEE-Eecee
Confidence            8899999999998876443                                          8999999998765 69999


Q ss_pred             cCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCC---CCCCCceE
Q 008859           99 LKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS---PPKPGASI  173 (551)
Q Consensus        99 i~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk---p~k~~G~L  173 (551)
                      ++++.||+|||+|.|.+.... ..|.|+|+|.+.++ +++||.+.+++.++..+...+.||+|.....+   ..+..|.|
T Consensus        39 ~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l  118 (123)
T cd04025          39 VKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSL  118 (123)
T ss_pred             ecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEE
Confidence            999999999999999998764 57999999999988 89999999999999887788999999754333   22345778


Q ss_pred             EEEe
Q 008859          174 QLEL  177 (551)
Q Consensus       174 ~lsl  177 (551)
                      +|.+
T Consensus       119 ~~~~  122 (123)
T cd04025         119 RLKV  122 (123)
T ss_pred             EEEe
Confidence            8766

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.74  E-value=3.7e-17  Score=147.44  Aligned_cols=103  Identities=35%  Similarity=0.593  Sum_probs=92.4

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeee
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR  155 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~  155 (551)
                      +||||+|.+.+.+ .||++++++.||+|||+|.|++.+.   ...|.|+|||.+.++ +++||++.++++++..+.....
T Consensus        15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~   93 (127)
T cd08373          15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV   93 (127)
T ss_pred             CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence            8999999998765 6999999999999999999999875   567999999999887 7999999999999999888999


Q ss_pred             EEEccCCCCCCCCCCceEEEEeeeeccCCC
Q 008859          156 WYDIIAPSGSPPKPGASIQLELKFTPCDKN  185 (551)
Q Consensus       156 w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~~  185 (551)
                      |++|.+.++++.  .|+|+++++|.|...+
T Consensus        94 ~~~L~~~~~~~~--~~~l~l~~~~~~~~~~  121 (127)
T cd08373          94 TEPLLDSNGRPT--GATISLEVSYQPPDGA  121 (127)
T ss_pred             EEeCcCCCCCcc--cEEEEEEEEEeCCCCc
Confidence            999987777653  5899999999998654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.73  E-value=1.3e-17  Score=146.83  Aligned_cols=101  Identities=33%  Similarity=0.554  Sum_probs=88.4

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv   98 (551)
                      |.|+|++|++|++++....                                         ++||||+|.+++ ..+||++
T Consensus         1 l~V~v~~a~~L~~~d~~~~-----------------------------------------~~Dpyv~v~~~~-~~~kT~v   38 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSD-----------------------------------------LTDAFVEVKFGS-TTYKTDV   38 (110)
T ss_pred             CEEEEEEEECCCccccCCC-----------------------------------------CCCceEEEEECC-eeEecce
Confidence            6899999999998874221                                         289999999988 5579999


Q ss_pred             cCCCCCCeE-eeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccc---cceeeeEEEccC
Q 008859           99 LKNSQEPVW-NEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIA  161 (551)
Q Consensus        99 i~ns~nP~W-nE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~---g~~i~~w~~Ll~  161 (551)
                      ++++.||.| ||+|.|.+.+.   ...|.|+|+|.+.++ +++||++.+++.++..   +..+++||+|++
T Consensus        39 ~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          39 VKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            999999999 99999999875   357999999999998 7999999999999986   567999999976

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.73  E-value=1.3e-17  Score=149.32  Aligned_cols=103  Identities=18%  Similarity=0.359  Sum_probs=89.4

Q ss_pred             EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 008859           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---   90 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---   90 (551)
                      +-+|.|.|+|++|++|++++ .+.                                          +||||+|++..   
T Consensus         9 ~~~~~L~V~Vi~ar~L~~~~-~g~------------------------------------------~dpYVkv~l~p~~~   45 (119)
T cd08685           9 GQNRKLTLHVLEAKGLRSTN-SGT------------------------------------------CNSYVKISLSPDKE   45 (119)
T ss_pred             EcCCEEEEEEEEEECCCCCC-CCC------------------------------------------CCeeEEEEEEeCCC
Confidence            46799999999999999877 332                                          89999999954   


Q ss_pred             -eeeEEeeecCCCCCCeEeeEEEEeecCC--CCeEEEEEEecCCCC--CceeEEEEeecccccccceeeeEEEc
Q 008859           91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        91 -~~v~rTrvi~ns~nP~WnE~F~i~vah~--~~~l~f~Vkd~d~~g--~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                       ....||++++++.||+|||+|.|.+.+.  ...+.|+|||.+..+  +++||.+.||+.++..++.+++||.|
T Consensus        46 ~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          46 VRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence             3456999999999999999999999875  346899999998764  68999999999999988889999986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.71  E-value=4.3e-17  Score=146.51  Aligned_cols=103  Identities=25%  Similarity=0.496  Sum_probs=89.6

Q ss_pred             EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 008859           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---   90 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---   90 (551)
                      +.-|.|.|+|++|++|+.++ .+.                                          +||||+|.+..   
T Consensus        10 y~~~~L~V~Vi~A~~L~~~~-~~~------------------------------------------~DpyVkv~l~~~~~   46 (122)
T cd08381          10 YKNGTLFVMVMHAKNLPLLD-GSD------------------------------------------PDPYVKTYLLPDPQ   46 (122)
T ss_pred             EeCCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCCEEEEEEeeCCc
Confidence            44689999999999999887 432                                          89999999953   


Q ss_pred             -eeeEEeeecCCCCCCeEeeEEEEee-cC---CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           91 -ATVARTRVLKNSQEPVWNEHFNIPL-AH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        91 -~~v~rTrvi~ns~nP~WnE~F~i~v-ah---~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                       ....||++++++.||.|||+|.|++ ..   ....|.|+|||.+.++ +++||.+.|++.++..++..+.||+|
T Consensus        47 ~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          47 KTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             cCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence             3357999999999999999999987 33   2457999999999998 89999999999999988888999997

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.71  E-value=2.2e-16  Score=142.48  Aligned_cols=121  Identities=17%  Similarity=0.243  Sum_probs=101.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r   95 (551)
                      ++.|.|+|++|++|+++|.++.                                          +||||+|.+.+.. .|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------------------~dPyv~v~~~~~~-~k   38 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGG------------------------------------------ADPYVIIKCEGES-VR   38 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCC------------------------------------------cCccEEEEECCEE-EE
Confidence            5679999999999998876553                                          8999999998876 69


Q ss_pred             eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCC-CCCCCceEE
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS-PPKPGASIQ  174 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk-p~k~~G~L~  174 (551)
                      |++++++.||+|||.|.|.+..+...|.|+|||++.+++++||.+.+++.++.  .....|++|.....+ ..+..|+|.
T Consensus        39 T~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~  116 (126)
T cd04046          39 SPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTIS  116 (126)
T ss_pred             eCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEE
Confidence            99999999999999999999888888999999999999999999999998764  344578888533222 234679999


Q ss_pred             EEeeeec
Q 008859          175 LELKFTP  181 (551)
Q Consensus       175 lsl~f~p  181 (551)
                      +++++.+
T Consensus       117 ~~~~~~~  123 (126)
T cd04046         117 VKVTSSD  123 (126)
T ss_pred             EEEEEcc
Confidence            9998765

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.71  E-value=8.4e-17  Score=144.21  Aligned_cols=104  Identities=27%  Similarity=0.457  Sum_probs=94.6

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|++.+..+.                                          +||||+|.+.+..+++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~kT   38 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGK------------------------------------------IDPYVRVLVNGIVKGRT   38 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCC------------------------------------------cCCEEEEEECCEEeece
Confidence            789999999999998876543                                          89999999988778999


Q ss_pred             eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCC
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~  163 (551)
                      ++++++.||.|||.|.|++.++...|.|+|+|.+.++ +++||.+.+++.++..+ ..++||.+++.+
T Consensus        39 ~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~  105 (120)
T cd04045          39 VTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE  105 (120)
T ss_pred             eEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence            9999999999999999999998889999999999998 78999999999999876 779999998765

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PHA03003 palmytilated EEV membrane glycoprotein; Provisional

Probab=99.71  E-value=1.9e-16  Score=167.96  Aligned_cols=144  Identities=19%  Similarity=0.245  Sum_probs=107.8

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      -..|++++++|++||++|+|+.|++.     ++++.      .+.+|.++|++||+|||+||||+ |..++.        
T Consensus        30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~-----~~~d~------~g~~i~~aL~~aa~rGV~Vril~-D~~~~~--------   89 (369)
T PHA03003         30 MSTYECFDEIISQAKKYIYIASFCCN-----LRSTP------EGRLILDKLKEAAESGVKVTILV-DEQSGD--------   89 (369)
T ss_pred             CCHHHHHHHHHHhhhhEEEEEEEEec-----ccCCc------hHHHHHHHHHHhccCCCeEEEEe-cCCCCC--------
Confidence            46899999999999999999999631     33333      35899999999999999999996 975421        


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                              ...+.|+.+||++.....  .. +        +..+..|.|++|||++        +||+||+||++ +|-+
T Consensus        90 --------~~~~~L~~~Gv~v~~~~~--~~-~--------~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~~~  141 (369)
T PHA03003         90 --------KDEEELQSSNINYIKVDI--GK-L--------NNVGVLLGSFWVSDDR--------RCYIGNASLTG-GSIS  141 (369)
T ss_pred             --------ccHHHHHHcCCEEEEEec--cc-c--------CCCCceeeeEEEEcCc--------EEEEecCccCC-cccC
Confidence                    235678888999764321  10 0        0012348899999999        99999999998 4432


Q ss_pred             CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCC
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKL  462 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~  462 (551)
                      ..+                         ....|+|.     ||+|.++...|.+.|+.++++
T Consensus       142 ~~~-------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~  173 (369)
T PHA03003        142 TIK-------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNK  173 (369)
T ss_pred             ccc-------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCC
Confidence            222                         13579994     999999999999999877553

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.71  E-value=1.8e-16  Score=145.27  Aligned_cols=114  Identities=24%  Similarity=0.396  Sum_probs=96.3

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|+++|.++.                                          +||||++.+++.. .||
T Consensus        15 G~L~V~Vi~A~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~-~kT   51 (136)
T cd08375          15 GRLMVVIVEGRDLKPCNSNGK------------------------------------------SDPYCEVSMGSQE-HKT   51 (136)
T ss_pred             EEEEEEEEEeeCCCCCCCCCC------------------------------------------cCcEEEEEECCEe-eec
Confidence            899999999999998886553                                          8999999997765 799


Q ss_pred             eecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccc-----cceeeeEEEccCCCCCCCCC
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-----GELISRWYDIIAPSGSPPKP  169 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~-----g~~i~~w~~Ll~~~gkp~k~  169 (551)
                      ++++++.||.|||.|.|.+.... ..|.|+|||.+.++ +++||.+.|++.++..     ...+..|+++   .+   +.
T Consensus        52 ~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~---~~  125 (136)
T cd08375          52 KVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HE---VP  125 (136)
T ss_pred             cccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---cc---cc
Confidence            99999999999999999997654 56899999999988 8999999999999885     2345567766   12   34


Q ss_pred             CceEEEEeee
Q 008859          170 GASIQLELKF  179 (551)
Q Consensus       170 ~G~L~lsl~f  179 (551)
                      .|+|+|++.|
T Consensus       126 ~g~i~l~~~~  135 (136)
T cd08375         126 TGEVVVKLDL  135 (136)
T ss_pred             ceeEEEEEEe
Confidence            6999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.70  E-value=1.3e-16  Score=143.00  Aligned_cols=101  Identities=34%  Similarity=0.557  Sum_probs=89.9

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeE
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVA   94 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~   94 (551)
                      |.|.|+|++|++|+.++..+.                                          +||||+|.+.+  ..+.
T Consensus        16 ~~L~V~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~l~~~~~~~~   53 (124)
T cd08385          16 NQLTVGIIQAADLPAMDMGGT------------------------------------------SDPYVKVYLLPDKKKKF   53 (124)
T ss_pred             CEEEEEEEEeeCCCCccCCCC------------------------------------------CCCEEEEEEEcCCCCce
Confidence            899999999999998875443                                          89999999853  3567


Q ss_pred             EeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           95 RTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.++++++..|+..++|++|
T Consensus        54 kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08385          54 ETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL  122 (124)
T ss_pred             ecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence            999999999999999999998763   457999999999987 89999999999999889999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.70  E-value=1.1e-16  Score=139.74  Aligned_cols=98  Identities=26%  Similarity=0.487  Sum_probs=85.7

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv   98 (551)
                      |.|+|++|++|++++..+.                                          +||||+|.+++. ..||++
T Consensus         2 L~V~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~-~~kT~v   38 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKE------------------------------------------PSPYVELTVGKT-TQKSKV   38 (105)
T ss_pred             EEEEEeeecCCCCcccCCC------------------------------------------CCcEEEEEECCE-EEeCcc
Confidence            7899999999998765332                                          899999999984 579999


Q ss_pred             cCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeeccccccc--ceeeeEEEccC
Q 008859           99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDIIA  161 (551)
Q Consensus        99 i~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g--~~i~~w~~Ll~  161 (551)
                      ++++.||+|||+|.|.+.++ ...|.|+|+|.+.  +++||++.|++.++..+  ..+++||+|.+
T Consensus        39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          39 KERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             ccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence            99999999999999999985 5679999999987  88999999999999864  46899999943

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.70  E-value=1.5e-16  Score=142.95  Aligned_cols=117  Identities=25%  Similarity=0.374  Sum_probs=96.0

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr   97 (551)
                      .|+|+|++|++|++++.++.                                          +||||+|++.+..++||+
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~kT~   38 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRL------------------------------------------PDPFAVITVDGGQTHSTD   38 (123)
T ss_pred             CeEEEEEEecCCCccCCCCC------------------------------------------CCcEEEEEECCccceEcc
Confidence            38999999999998876553                                          899999999766678999


Q ss_pred             ecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC---CceeEEEEeecccccccc-eeeeEEEccCCCCC-CCCCCce
Q 008859           98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGE-LISRWYDIIAPSGS-PPKPGAS  172 (551)
Q Consensus        98 vi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g---~~lIG~v~Ipl~~l~~g~-~i~~w~~Ll~~~gk-p~k~~G~  172 (551)
                      +++++.||.|||+|.|++.. ...|.|+|||.+.++   +++||.+.+++.++.... ....|++|...... .....|+
T Consensus        39 v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~  117 (123)
T cd08382          39 VAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGK  117 (123)
T ss_pred             EEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeE
Confidence            99999999999999999976 678999999999886   479999999999987543 34679999544432 2234688


Q ss_pred             EEEEe
Q 008859          173 IQLEL  177 (551)
Q Consensus       173 L~lsl  177 (551)
                      |.+++
T Consensus       118 v~~~~  122 (123)
T cd08382         118 IVVSL  122 (123)
T ss_pred             EEEEe
Confidence            87765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=1.1e-16  Score=143.47  Aligned_cols=99  Identities=22%  Similarity=0.311  Sum_probs=85.2

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC------e
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------A   91 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~------~   91 (551)
                      .|.|+|++|++|+.++. +.                                          +||||+|++.+      .
T Consensus         1 kL~V~Vi~A~~L~~~d~-g~------------------------------------------~DPYVkV~l~g~~~~~k~   37 (120)
T cd08395           1 KVTVKVVAANDLKWQTT-GM------------------------------------------FRPFVEVNLIGPHLSDKK   37 (120)
T ss_pred             CEEEEEEECcCCCcccC-CC------------------------------------------CCCEEEEEEecCCCcccc
Confidence            38999999999997763 32                                          89999999832      2


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      +..||+++.++.||+|||+|.|.+...    ...|.|+|+|.+.++ +++||++.||+.++..++..+.|++|
T Consensus        38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L  110 (120)
T cd08395          38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPL  110 (120)
T ss_pred             cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEEC
Confidence            346999999999999999999999753    245899999999887 88999999999999998889999999

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.69  E-value=1.2e-16  Score=143.33  Aligned_cols=102  Identities=26%  Similarity=0.499  Sum_probs=90.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCeee
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQATV   93 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l--~~~~v   93 (551)
                      .|.|.|+|++|++|++++..+.                                          +||||+|.+  .+..+
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~~   52 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGT------------------------------------------ADPYCKVRLLPDRSNT   52 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCeEEEEEecCCCCc
Confidence            3789999999999998876543                                          899999999  43567


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      +||++++++.||+|||+|.|.+.+.   ...|.|+|+|.+.++ +++||.+.|+++++..++..+.|++|
T Consensus        53 ~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l  122 (124)
T cd08387          53 KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI  122 (124)
T ss_pred             EeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence            8999999999999999999998775   357999999999987 89999999999999878889999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.69  E-value=1.2e-16  Score=143.45  Aligned_cols=113  Identities=25%  Similarity=0.428  Sum_probs=95.7

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr   97 (551)
                      +|.|+|++|++|++.+..+.                                          +||||+|++.+....+|+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~------------------------------------------~dpYv~v~~~~~~~~~T~   38 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGK------------------------------------------MKVYAVVWIDPSHKQSTP   38 (125)
T ss_pred             CEEEEEEEcccCCCCCcccC------------------------------------------CceEEEEEECCCcccccc
Confidence            58999999999998775443                                          899999999884557999


Q ss_pred             ecC-CCCCCeEeeEEEEeecCC-----CCeEEEEEEecCCCC-CceeEEEEeeccccccccee-----eeEEEccCCCCC
Q 008859           98 VLK-NSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-----SRWYDIIAPSGS  165 (551)
Q Consensus        98 vi~-ns~nP~WnE~F~i~vah~-----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i-----~~w~~Ll~~~gk  165 (551)
                      ++. ++.||.|||.|.|.+.++     ...|.|+|+|.+.++ +++||.+.|++.++..+...     ..||+|.+.+|+
T Consensus        39 ~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~  118 (125)
T cd04051          39 VDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK  118 (125)
T ss_pred             cccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC
Confidence            986 489999999999999887     578999999999876 89999999999999876543     689999887777


Q ss_pred             CCCCCceEEE
Q 008859          166 PPKPGASIQL  175 (551)
Q Consensus       166 p~k~~G~L~l  175 (551)
                      +   .|.|++
T Consensus       119 ~---~G~~~~  125 (125)
T cd04051         119 P---QGVLNF  125 (125)
T ss_pred             c---CeEEeC
Confidence            4   477764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.69  E-value=5.9e-16  Score=139.12  Aligned_cols=114  Identities=24%  Similarity=0.394  Sum_probs=95.5

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeEE
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVAR   95 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~r   95 (551)
                      .|.|+|++|++|++++..+.                                          +||||+|.+.+  ...+|
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~------------------------------------------~Dpyv~v~~~~~~~~~~k   39 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGL------------------------------------------SDPYVTLVDTNGKRRIAK   39 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCC------------------------------------------CCceEEEEECCCCeeeec
Confidence            47899999999998876443                                          89999999865  45689


Q ss_pred             eeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeecccccc---cceeeeEEEccCCCCCCCCCC
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDIIAPSGSPPKPG  170 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~---g~~i~~w~~Ll~~~gkp~k~~  170 (551)
                      |++++++.||.|||+|.|++.+. ...|.|+|+|.+.++ +++||++.++++.+..   |...+.|++|.        ..
T Consensus        40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~  111 (126)
T cd04043          40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQ  111 (126)
T ss_pred             ccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CC
Confidence            99999999999999999999885 567999999999987 8999999999987643   44677899992        24


Q ss_pred             ceEEEEeeeec
Q 008859          171 ASIQLELKFTP  181 (551)
Q Consensus       171 G~L~lsl~f~p  181 (551)
                      |+|++.+.+.-
T Consensus       112 g~i~l~~~~~~  122 (126)
T cd04043         112 GRLLLRVSMEG  122 (126)
T ss_pred             CeEEEEEEEee
Confidence            88888888753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.68  E-value=2.7e-16  Score=145.54  Aligned_cols=108  Identities=20%  Similarity=0.399  Sum_probs=90.5

Q ss_pred             EEEeeEEEEEEEEeecCCCCCC-CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-
Q 008859           13 IYLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-   90 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~-   90 (551)
                      .+-.|.|.|+|++|++|+.++. .+                                          .+||||++++.. 
T Consensus        25 ~y~~~~L~V~Vi~ArnL~~~~~~~g------------------------------------------~sDPYVKv~Llp~   62 (146)
T cd04028          25 YDKKGQLEVEVIRARGLVQKPGSKV------------------------------------------LPAPYVKVYLLEG   62 (146)
T ss_pred             EeCCCEEEEEEEEeeCCCcccCCCC------------------------------------------CcCCeEEEEEECC
Confidence            3456999999999999987642 22                                          289999999943 


Q ss_pred             -e--eeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEE-ecCCCC-CceeEEEEeecccccccceeeeEEEccCC
Q 008859           91 -A--TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (551)
Q Consensus        91 -~--~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vk-d~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~  162 (551)
                       .  ...||++++++.||+|||+|.|.+......|.|+|| |.+.++ +++||.+.|+++++..+.....||+|+..
T Consensus        63 ~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028          63 KKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence             2  356999999999999999999999866667999999 566666 79999999999999878888999999654

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.68  E-value=1.3e-16  Score=147.83  Aligned_cols=100  Identities=28%  Similarity=0.546  Sum_probs=91.4

Q ss_pred             EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee
Q 008859           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT   92 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~   92 (551)
                      ..++|.|.|+|++|.+|.-.|+.+.                                          |||||.+.+++++
T Consensus         2 ~~~vGLL~v~v~~g~~L~~rD~~~s------------------------------------------SDPyVVl~lg~q~   39 (168)
T KOG1030|consen    2 EMLVGLLRVRVKRGKNLAIRDFLGS------------------------------------------SDPYVVLELGNQK   39 (168)
T ss_pred             CccceEEEEEEEeecCeeeeccccC------------------------------------------CCCeEEEEECCee
Confidence            3578999999999999998887543                                          9999999999998


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeee
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR  155 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~  155 (551)
                      + |||++.++.||+|||.|.|.+.++...|.++|||+|.|. +++||.|.||+..+..++....
T Consensus        40 l-kT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~~~  102 (168)
T KOG1030|consen   40 L-KTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKMDY  102 (168)
T ss_pred             e-eeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhhhc
Confidence            5 999999999999999999999999999999999999998 8999999999999997765554

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.68  E-value=6.5e-16  Score=136.68  Aligned_cols=97  Identities=24%  Similarity=0.435  Sum_probs=77.7

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeE
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRW  156 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w  156 (551)
                      +||||.|++.+..++||+++++ .||.|||+|.|.+.+.   ...|.|.|+|.+..+ ..+|.+.+++..+..++..+.|
T Consensus        18 ~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~-~~~~~g~v~l~~~~~~~~~~~w   95 (117)
T cd08383          18 RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD-RDIVIGKVALSKLDLGQGKDEW   95 (117)
T ss_pred             CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-CeeEEEEEEecCcCCCCcceeE
Confidence            8999999999877899999999 9999999999999884   456788889988664 2244445666666668889999


Q ss_pred             EEccCCCCCCCCCCceEEEEeee
Q 008859          157 YDIIAPSGSPPKPGASIQLELKF  179 (551)
Q Consensus       157 ~~Ll~~~gkp~k~~G~L~lsl~f  179 (551)
                      |+|...+++. +..|+|+|+++|
T Consensus        96 ~~L~~~~~~~-~~~G~l~l~~~~  117 (117)
T cd08383          96 FPLTPVDPDS-EVQGSVRLRARY  117 (117)
T ss_pred             EECccCCCCC-CcCceEEEEEEC
Confidence            9996555432 467999999987

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.68  E-value=4.5e-16  Score=139.96  Aligned_cols=97  Identities=21%  Similarity=0.329  Sum_probs=85.9

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|+.++                                             +.||||.|.+++.+ .+|
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---------------------------------------------~~dPYV~Ik~g~~k-~kT   35 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---------------------------------------------KFNTYVTLKVQNVK-STT   35 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---------------------------------------------CCCCeEEEEECCEE-eEe
Confidence            57999999999997543                                             16899999998866 699


Q ss_pred             eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccccccee--eeEEEcc
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELI--SRWYDII  160 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i--~~w~~Ll  160 (551)
                      +++++ .||.|||.|.|.+......|+|+|||++.+++++||++.|||.++..++..  ..||+|.
T Consensus        36 ~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~  100 (127)
T cd08394          36 IAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD  100 (127)
T ss_pred             eECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence            99988 499999999999998888899999999998899999999999999977654  7899984

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.68  E-value=4.7e-16  Score=140.37  Aligned_cols=103  Identities=22%  Similarity=0.407  Sum_probs=88.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      -|.|.|+|++|++|+.++....                                         .+||||+|++..    .
T Consensus        14 ~~~L~V~Vi~a~~L~~~~~~~~-----------------------------------------~~DpyVkv~l~p~~~~~   52 (125)
T cd04029          14 TQSLNVHVKECRNLAYGDEAKK-----------------------------------------RSNPYVKTYLLPDKSRQ   52 (125)
T ss_pred             CCeEEEEEEEecCCCccCCCCC-----------------------------------------CCCcEEEEEEEcCCccc
Confidence            3789999999999987664211                                         289999999842    3


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ...||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.|++.++...+..+.|+||
T Consensus        53 ~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l  124 (125)
T cd04029          53 SKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL  124 (125)
T ss_pred             cceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence            346999999999999999999998763   456999999999988 78999999999999988889999997

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.67  E-value=9.2e-16  Score=140.08  Aligned_cols=118  Identities=19%  Similarity=0.356  Sum_probs=96.1

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr   97 (551)
                      .|.|+|++|++|+++|..+.                                          +||||+|.+.+.+ .||+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~kT~   38 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGL------------------------------------------SDPFARVSFLNQS-QETE   38 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCC------------------------------------------CCCEEEEEECCee-eEee
Confidence            48999999999999886553                                          8999999998765 6999


Q ss_pred             ecCCCCCCeEeeEEEEeecCC----------CCeEEEEEEecCCCC-CceeEEEEe-ecccccc---cceeeeEEEccCC
Q 008859           98 VLKNSQEPVWNEHFNIPLAHP----------LSNLEIQVKDDDVFG-AQIIGTAAI-PAHTIAT---GELISRWYDIIAP  162 (551)
Q Consensus        98 vi~ns~nP~WnE~F~i~vah~----------~~~l~f~Vkd~d~~g-~~lIG~v~I-pl~~l~~---g~~i~~w~~Ll~~  162 (551)
                      +++++.||.|||.|.|++...          ...+.|+|+|.+.++ +++||++.+ |+..+..   +.....|++|. .
T Consensus        39 v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~  117 (135)
T cd04017          39 VIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-K  117 (135)
T ss_pred             eEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-c
Confidence            999999999999999985432          246899999999988 799999997 5554442   45678999994 3


Q ss_pred             CCCCCCCCceEEEEeeeecc
Q 008859          163 SGSPPKPGASIQLELKFTPC  182 (551)
Q Consensus       163 ~gkp~k~~G~L~lsl~f~p~  182 (551)
                      .+   ...|+|.|++.+.+.
T Consensus       118 ~~---~~~Geil~~~~~~~~  134 (135)
T cd04017         118 GG---QSAGELLAAFELIEV  134 (135)
T ss_pred             CC---CchhheeEEeEEEEe
Confidence            23   357999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.67  E-value=2.6e-16  Score=140.09  Aligned_cols=99  Identities=19%  Similarity=0.369  Sum_probs=84.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---ee
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---AT   92 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---~~   92 (551)
                      .|.|.|+|++|++|+ ++  +                                          ++||||+|++..   ..
T Consensus        13 ~~~L~V~vikA~~L~-~~--g------------------------------------------~sDPYVKv~L~~~~k~~   47 (118)
T cd08677          13 KAELHVNILEAENIS-VD--A------------------------------------------GCECYISGCVSVSEGQK   47 (118)
T ss_pred             CCEEEEEEEEecCCC-CC--C------------------------------------------CCCeEEEEEEcCCcCcc
Confidence            489999999999998 22  2                                          289999999953   24


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ..+|+|.+++.||+|||+|.|.++..   ...|.|+|+|.|.++ +++||++.+|+.++..+...+.|-+|
T Consensus        48 k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          48 EAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            56999999999999999999999875   456999999999998 89999999999998767777788764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.67  E-value=2.6e-16  Score=146.56  Aligned_cols=113  Identities=31%  Similarity=0.382  Sum_probs=85.0

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr   97 (551)
                      .|.|+|++|++||.||..+.  ..++..  .+.                        .....+||||+|.+.+.+ .||+
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~--~~~~~~--~~~------------------------~~~~~~DPYV~V~~~g~~-~kT~   51 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIM--ANVKKA--FLG------------------------EKKELVDPYVEVSFAGQK-VKTS   51 (151)
T ss_pred             CeEEEEEEeCCCCccChhhh--ccceec--ccc------------------------CCCCCcCcEEEEEECCEe-eecc
Confidence            37899999999999985431  001110  000                        011238999999999977 4999


Q ss_pred             ecCCCCCCeEeeEEEEeecC--CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859           98 VLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (551)
Q Consensus        98 vi~ns~nP~WnE~F~i~vah--~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll  160 (551)
                      +++++.||+|||+|.|++..  ....|.|+|+|.|.++ +++||.+.|++.++... ..++|+|++
T Consensus        52 v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~-~~~~~lp~~  116 (151)
T cd04018          52 VKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS-GDEGFLPTF  116 (151)
T ss_pred             eEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC-CccccCCcc
Confidence            99999999999999998654  3568999999999996 89999999999998863 444555443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.67  E-value=8.4e-16  Score=138.88  Aligned_cols=114  Identities=25%  Similarity=0.500  Sum_probs=95.2

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEee
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTR   97 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTr   97 (551)
                      .|.|+|++|++|+++|..+.                                          +||||+|.+.+. .+||+
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~~~~~-~~kT~   38 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGT------------------------------------------SDPYVTVQVGKT-KKRTK   38 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCC------------------------------------------cCcEEEEEECCE-eeecc
Confidence            58999999999998886553                                          899999999765 47999


Q ss_pred             ecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCC------------CCceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859           98 VLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (551)
Q Consensus        98 vi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~------------g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk  165 (551)
                      +++++.||.|||.|.|.+..+...|.|+|||.|..            .+++||.+.+++.++.  +....|++|...+ .
T Consensus        39 ~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~-~  115 (127)
T cd04027          39 TIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRT-D  115 (127)
T ss_pred             eecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCC-C
Confidence            99999999999999999987777899999999853            3899999999999875  3457899996554 3


Q ss_pred             CCCCCceEEEEe
Q 008859          166 PPKPGASIQLEL  177 (551)
Q Consensus       166 p~k~~G~L~lsl  177 (551)
                      ..+..|+|+++|
T Consensus       116 ~~~~~G~i~~~~  127 (127)
T cd04027         116 KSAVSGAIRLHI  127 (127)
T ss_pred             CCcEeEEEEEEC
Confidence            334689988874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.67  E-value=3.2e-16  Score=141.35  Aligned_cols=101  Identities=23%  Similarity=0.409  Sum_probs=87.2

Q ss_pred             eEEEEEEEEeecCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      +.|.|+|++|++|+.+|.. +                                          ++||||+|++..    .
T Consensus        15 ~~L~V~vi~a~~L~~~d~~~g------------------------------------------~~dpyVkv~l~p~~~~~   52 (125)
T cd08393          15 RELHVHVIQCQDLAAADPKKQ------------------------------------------RSDPYVKTYLLPDKSNR   52 (125)
T ss_pred             CEEEEEEEEeCCCCCcCCCCC------------------------------------------CCCcEEEEEEEcCCCcc
Confidence            5799999999999988753 2                                          289999999942    2


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ...||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.||+.++..++....||+|
T Consensus        53 ~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L  124 (125)
T cd08393          53 GKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL  124 (125)
T ss_pred             ccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence            346999999999999999999998753   457999999999988 78999999999999877778899997

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.67  E-value=4.7e-16  Score=139.84  Aligned_cols=101  Identities=27%  Similarity=0.537  Sum_probs=88.5

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~   92 (551)
                      +.|.|+|++|++|++++..+.                                          +||||+|.+.+    ..
T Consensus        16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~   53 (127)
T cd04030          16 QKLIVTVHKCRNLPPCDSSDI------------------------------------------PDPYVRLYLLPDKSKST   53 (127)
T ss_pred             CEEEEEEEEEECCCCccCCCC------------------------------------------CCceEEEEEEcCCCCCc
Confidence            789999999999998876443                                          89999999853    34


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCC--C-CceeEEEEeecccccccceeeeEEEc
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVF--G-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~--g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ..||++++++.||+|||+|.|.+...   ...|.|+|||.+.+  + +++||.+.|++.++..++..++||+|
T Consensus        54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L  126 (127)
T cd04030          54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL  126 (127)
T ss_pred             eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence            67999999999999999999998654   35799999999876  4 89999999999999888889999997

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.66  E-value=3.6e-16  Score=137.93  Aligned_cols=98  Identities=28%  Similarity=0.465  Sum_probs=84.9

Q ss_pred             eEEEEEEEEeecCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eee
Q 008859           17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV   93 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v   93 (551)
                      |.|.|+|++|++|+++|.. +.                                          +||||+|.+.+  ..+
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~------------------------------------------~Dpyv~v~~~~~~~~~   38 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGS------------------------------------------SDPYVTASFAKFGKPL   38 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCC------------------------------------------CCccEEEEEccCCCcc
Confidence            7899999999999988765 33                                          89999999853  356


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      .+|++++++.||+|||+|.|.+...    ...|.|+|||.+.++ +++||.+.+++.++.   .-.+|+++
T Consensus        39 ~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~  106 (111)
T cd04041          39 YSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGR  106 (111)
T ss_pred             EeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCcc
Confidence            7999999999999999999988764    457999999999998 899999999999998   33578887

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.66  E-value=7e-16  Score=136.13  Aligned_cols=98  Identities=20%  Similarity=0.402  Sum_probs=86.3

Q ss_pred             CCCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeecccccc-cceeeeE
Q 008859           79 TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GELISRW  156 (551)
Q Consensus        79 tsDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~-g~~i~~w  156 (551)
                      .+||||+|.+.+...+||++++++.||+|||.|.|.+++. ...|+|.|+|.+.+++++||.+.++++++.. +...+.|
T Consensus        12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w   91 (111)
T cd04052          12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQW   91 (111)
T ss_pred             CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcccee
Confidence            4899999999987788999999999999999999999876 4669999999998889999999999999864 4557899


Q ss_pred             EEccCCCCCCCCCCceEEEEeeeecc
Q 008859          157 YDIIAPSGSPPKPGASIQLELKFTPC  182 (551)
Q Consensus       157 ~~Ll~~~gkp~k~~G~L~lsl~f~p~  182 (551)
                      |+|.+      ...|+|+++++|.|+
T Consensus        92 ~~L~~------~~~G~i~~~~~~~p~  111 (111)
T cd04052          92 FPLSG------NGQGRIRISALWKPV  111 (111)
T ss_pred             EECCC------CCCCEEEEEEEEecC
Confidence            99953      246999999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.66  E-value=1.1e-15  Score=135.13  Aligned_cols=105  Identities=29%  Similarity=0.488  Sum_probs=92.0

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEeee
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRV   98 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rTrv   98 (551)
                      |.|+|++|++|++++..+.                                          +||||+|.+.+..++||++
T Consensus         1 l~v~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~T~v   38 (115)
T cd04040           1 LTVDVISAENLPSADRNGK------------------------------------------SDPFVKFYLNGEKVFKTKT   38 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCC------------------------------------------CCCeEEEEECCCcceeece
Confidence            5799999999998775443                                          8999999998777789999


Q ss_pred             cCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859           99 LKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (551)
Q Consensus        99 i~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk  165 (551)
                      +.++.+|.|||+|.|.+... ...+.|+|||.+.++ +++||.+.+++.++..+...+.|++|...++.
T Consensus        39 ~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~  107 (115)
T cd04040          39 IKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG  107 (115)
T ss_pred             ecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence            99999999999999999874 567999999999887 89999999999999988889999999654443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.65  E-value=8e-16  Score=137.84  Aligned_cols=100  Identities=28%  Similarity=0.447  Sum_probs=84.6

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~   92 (551)
                      |.|.|+|++|++|+.++..+.                                          +||||+|.+.+    ..
T Consensus        16 ~~L~V~vi~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~   53 (125)
T cd04031          16 SQLIVTVLQARDLPPRDDGSL------------------------------------------RNPYVKVYLLPDRSEKS   53 (125)
T ss_pred             CEEEEEEEEecCCCCcCCCCC------------------------------------------CCCEEEEEEccCCCccc
Confidence            789999999999998876543                                          89999999964    34


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecC----CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah----~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      +.||++++++.||+|||+|.|++..    ....|.|+|||.+.++ +++||.+.+++.+.. .+....||+|
T Consensus        54 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L  124 (125)
T cd04031          54 KRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL  124 (125)
T ss_pred             cccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence            6799999999999999999999755    2467999999999987 899999999999843 2334689997

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>PRK09428 pssA phosphatidylserine synthase; Provisional

Probab=99.65  E-value=1.4e-15  Score=164.49  Aligned_cols=168  Identities=16%  Similarity=0.168  Sum_probs=117.8

Q ss_pred             cCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHH
Q 008859          210 KGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGE  289 (551)
Q Consensus       210 ~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~e  289 (551)
                      .++.++++.++                    .+.|++|+++|++|+++|||++|.+       .+++      .+..|.+
T Consensus        23 ~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~-------~~D~------~g~~il~   69 (451)
T PRK09428         23 SPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYL-------EDDE------AGREILD   69 (451)
T ss_pred             CcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEe-------cCCc------hHHHHHH
Confidence            57889999987                    6899999999999999999999954       3333      3689999


Q ss_pred             HHHHhhh--cCCeEEEEEeCCCCccCccCCCCCCccc-CCcHHHHhHhcCC--CcEEEecCCCCcccccccccccccccc
Q 008859          290 LLKYKSE--EGVRVLLLVWDDKTSHDKLGVKTPGVMA-THDEETKKFFKHS--SVNCVLAPRYASSKLSYFKQQIVGTIF  364 (551)
Q Consensus       290 lL~~ka~--~GV~V~iLvwD~~~s~~~~~~~~~g~~~-t~~~~~~~~~~~~--~v~~~l~p~~~~~~~~~~~~~~~~~~~  364 (551)
                      +|.+|++  +||+|+||+ |...+..  +.  -|... ..+......++++  ||++.++. .|..        ....++
T Consensus        70 AL~~a~~~~~gv~VrvLv-D~~Ra~R--g~--iG~~~~~~~~~~~~~l~~~~~gv~v~~f~-~p~~--------~~e~~g  135 (451)
T PRK09428         70 ALYQAKQQNPELDIKVLV-DWHRAQR--GL--IGAAASNTNADWYCEMAQEYPGVDIPVYG-VPVN--------TREALG  135 (451)
T ss_pred             HHHHHHhcCCCcEEEEEE-Ecccccc--cc--cccCCCCcCHHHHHHHHHhCCCceEEEcC-Cccc--------cchhhh
Confidence            9998854  899999997 8742111  00  00000 0123444555543  68887642 1211        113567


Q ss_pred             cCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHH
Q 008859          365 THHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA  444 (551)
Q Consensus       365 ~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPa  444 (551)
                      ++|+|++|||++        |+|+| .||.+.++..  +                        ...  ..|.+++|+||+
T Consensus       136 r~HrKi~IiD~~--------v~ysG-aNi~d~Yl~~--~------------------------~~~--r~Dry~~i~g~~  178 (451)
T PRK09428        136 VLHLKGFIIDDT--------VLYSG-ASLNNVYLHQ--H------------------------DKY--RYDRYHLIRNAE  178 (451)
T ss_pred             hceeeEEEECCC--------EEEec-ccccHHHhcC--C------------------------ccc--CcceEEEEeCch
Confidence            899999999998        99997 7999844321  0                        001  127788899999


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 008859          445 AYDVLINFEQRWRKATK  461 (551)
Q Consensus       445 a~dv~~~F~~rW~~~~~  461 (551)
                      +.++..+|.+.|..++.
T Consensus       179 la~~~~~fi~~~~~~~~  195 (451)
T PRK09428        179 LADSMVNFIQQNLLNSP  195 (451)
T ss_pred             HHHHHHHHHHHHhhccC
Confidence            99999999999987553

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.65  E-value=9.6e-16  Score=137.53  Aligned_cols=101  Identities=26%  Similarity=0.520  Sum_probs=90.4

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|++++.++.                                          +||||+|.+.+.. .+|
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~~T   37 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGK------------------------------------------IDPYVIIQCRTQE-RKS   37 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCC------------------------------------------cCceEEEEECCEe-eee
Confidence            789999999999998876543                                          8999999998765 599


Q ss_pred             eecCC-CCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859           97 RVLKN-SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (551)
Q Consensus        97 rvi~n-s~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll  160 (551)
                      +++++ +.||.|||+|.|.+..+    ...|.|+|+|.+.++ +++||.+.|++.++..++..++|++|.
T Consensus        38 ~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~  107 (124)
T cd04049          38 KVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELV  107 (124)
T ss_pred             eEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence            99885 89999999999999987    467999999999987 899999999999999888899999983

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.65  E-value=1.2e-15  Score=136.80  Aligned_cols=102  Identities=30%  Similarity=0.465  Sum_probs=87.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--CeeeE
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATVA   94 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~v~   94 (551)
                      +.|.|+|++|++|+.+|..+.                                          +||||+|.+.  +....
T Consensus        16 ~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~~   53 (125)
T cd08386          16 STLTLKILKAVELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHKL   53 (125)
T ss_pred             CEEEEEEEEecCCCCccCCCC------------------------------------------CCceEEEEECCCCCcce
Confidence            589999999999998876543                                          8999999993  34557


Q ss_pred             EeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859           95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll  160 (551)
                      ||++++++.||.|||+|.|.+...    ...|.|+|+|.+.++ +++||.+.|++.++..++..+.|++|.
T Consensus        54 kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          54 ETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             eeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            999999999999999999974322    346999999999987 899999999999999888999999983

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.64  E-value=1.7e-15  Score=135.24  Aligned_cols=102  Identities=29%  Similarity=0.530  Sum_probs=87.8

Q ss_pred             eeEEEEEEEEeecCCCCC-CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 008859           16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----   90 (551)
                      .|.|.|+|++|++|+.++ ..+                                          .+||||+|.+..    
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~~dpyv~v~l~~~~~~   50 (123)
T cd08521          13 TGSLEVHIKECRNLAYADEKKK------------------------------------------RSNPYVKVYLLPDKSK   50 (123)
T ss_pred             CCEEEEEEEEecCCCCcCCCCC------------------------------------------CCCcEEEEEEecCCCc
Confidence            389999999999999877 322                                          289999999842    


Q ss_pred             eeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ...+||++++++.||.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.+++.++..+...+.||+|
T Consensus        51 ~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          51 QSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            2457999999999999999999998763   457999999999887 79999999999999888888999986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.64  E-value=1.2e-15  Score=134.35  Aligned_cols=98  Identities=20%  Similarity=0.346  Sum_probs=81.5

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|+..+..++                                      ...++||||+|++.+. +.||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~--------------------------------------~~~~~DPYv~v~~~~~-~~kT   41 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTR--------------------------------------TGFDMDPFVIISFGRR-VFRT   41 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCC--------------------------------------CCCccCceEEEEECCE-eEee
Confidence            789999999999998764321                                      0012799999999765 4699


Q ss_pred             eecCCCCCCeEeeEEEEeecCCC--CeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~--~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i  153 (551)
                      ++++++.||+|||.|.|++.+..  ..|.|+|||.+.++ +++||++.+++++|..+...
T Consensus        42 ~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~~  101 (108)
T cd04039          42 SWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQ  101 (108)
T ss_pred             eeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCCC
Confidence            99999999999999999987643  36899999999998 89999999999999876543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.64  E-value=3.2e-16  Score=142.32  Aligned_cols=108  Identities=29%  Similarity=0.433  Sum_probs=92.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~   92 (551)
                      |.|.|+|++|++|+++|..+.                                          +||||+|.+.+    ..
T Consensus        13 ~~L~V~Vi~a~~L~~~d~~~~------------------------------------------~DpyV~v~l~~~~~~~~   50 (133)
T cd08384          13 RGLIVGIIRCVNLAAMDANGY------------------------------------------SDPFVKLYLKPDAGKKS   50 (133)
T ss_pred             CEEEEEEEEEcCCCCcCCCCC------------------------------------------CCcEEEEEEEcCCCccC
Confidence            899999999999998886543                                          89999999853    34


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k  168 (551)
                      ..||++++++.||.|||+|.|.+..+   ...|.|+|+|.+.++ +++||.+.|++..  .|+..+.|++++...+++..
T Consensus        51 ~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~~  128 (133)
T cd08384          51 KHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKIE  128 (133)
T ss_pred             CceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCChh
Confidence            67999999999999999999998764   357999999999887 8999999999975  57778899999887777653

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.64  E-value=1.1e-15  Score=138.53  Aligned_cols=101  Identities=23%  Similarity=0.347  Sum_probs=86.3

Q ss_pred             eEEEEEEEEeecCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           17 GDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      +.|.|+|++|++|+.++.. +                                          .+||||+|++..    .
T Consensus        15 ~~L~V~V~~a~nL~~~d~~~g------------------------------------------~~dpYVkv~llp~~~~~   52 (128)
T cd08392          15 SCLEITIKACRNLAYGDEKKK------------------------------------------KCHPYVKVCLLPDKSHN   52 (128)
T ss_pred             CEEEEEEEecCCCCccCCCCC------------------------------------------CCCeEEEEEEEeCCccc
Confidence            7899999999999987753 2                                          289999999843    2


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccc---cceeeeEEEc
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GELISRWYDI  159 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~---g~~i~~w~~L  159 (551)
                      ...||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.|++.++..   ++.+..||+|
T Consensus        53 ~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          53 SKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             ceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            356999999999999999999998764   457999999999887 8999999999999864   4578899997

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.63  E-value=1.9e-15  Score=140.33  Aligned_cols=85  Identities=21%  Similarity=0.389  Sum_probs=71.6

Q ss_pred             CCcEEEEEECCe----eeEEeeecCCCCCCeEeeEEEEeecC----------------CCCeEEEEEEecCCCC-CceeE
Q 008859           80 SDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVFG-AQIIG  138 (551)
Q Consensus        80 sDpYvtV~l~~~----~v~rTrvi~ns~nP~WnE~F~i~vah----------------~~~~l~f~Vkd~d~~g-~~lIG  138 (551)
                      +||||+|.+.+.    ...||++++++.||+|||+|.|.+..                ....|.|+|||.+.++ +++||
T Consensus        19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG   98 (148)
T cd04010          19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLG   98 (148)
T ss_pred             CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeE
Confidence            899999999652    34699999999999999999999851                1245899999999886 89999


Q ss_pred             EEEeeccccccc-ceeeeEEEccCCCC
Q 008859          139 TAAIPAHTIATG-ELISRWYDIIAPSG  164 (551)
Q Consensus       139 ~v~Ipl~~l~~g-~~i~~w~~Ll~~~g  164 (551)
                      ++.||+..+..+ .....||+|.....
T Consensus        99 ~v~i~l~~l~~~~~~~~~W~~L~~~~~  125 (148)
T cd04010          99 EVRIPLRGLDLQAGSHQAWYFLQPREE  125 (148)
T ss_pred             EEEEecccccccCCcCcceeecCCccc
Confidence            999999999977 67889999965543

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.63  E-value=3.2e-16  Score=143.10  Aligned_cols=111  Identities=29%  Similarity=0.488  Sum_probs=93.3

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e-
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-   91 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~-   91 (551)
                      -+|.|.|+|++|++|++++..+.                                          +||||+|.+..  . 
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~   50 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKR   50 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCC------------------------------------------CCCeEEEEEEECCcc
Confidence            35899999999999998876543                                          89999999842  2 


Q ss_pred             -eeEEeeecCCCCCCeEeeEEEEeecCCC---CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCC
Q 008859           92 -TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (551)
Q Consensus        92 -~v~rTrvi~ns~nP~WnE~F~i~vah~~---~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp  166 (551)
                       ...+|++++++.||.|||+|.|++....   ..|.|+|+|.+.++ +++||.+.|++..  .|+..+.|++++...+++
T Consensus        51 ~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~  128 (136)
T cd08402          51 LKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP  128 (136)
T ss_pred             cceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence             3568999999999999999999987642   46899999999998 7999999999975  477889999998887776


Q ss_pred             CCC
Q 008859          167 PKP  169 (551)
Q Consensus       167 ~k~  169 (551)
                      ...
T Consensus       129 ~~~  131 (136)
T cd08402         129 IAQ  131 (136)
T ss_pred             eeE
Confidence            543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.63  E-value=4.8e-15  Score=138.39  Aligned_cols=99  Identities=19%  Similarity=0.400  Sum_probs=83.7

Q ss_pred             CCcEEEEEE----CCeeeEEeeecCCCCCCeEeeEEEEeecCC---------CCeEEEEEEecCCC--CCceeEEEEeec
Q 008859           80 SDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVF--GAQIIGTAAIPA  144 (551)
Q Consensus        80 sDpYvtV~l----~~~~v~rTrvi~ns~nP~WnE~F~i~vah~---------~~~l~f~Vkd~d~~--g~~lIG~v~Ipl  144 (551)
                      +||||++++    .+....||++++++.||+|||+|.|.+...         ...|.|+|||.+.|  .+++||++.|++
T Consensus        25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L  104 (155)
T cd08690          25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL  104 (155)
T ss_pred             CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence            899999998    344568999999999999999999998654         34699999999987  389999999999


Q ss_pred             ccccccceeeeEEEccCCCCCCCCCCceEEEEeeeec
Q 008859          145 HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (551)
Q Consensus       145 ~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p  181 (551)
                      +.+.....+..|++|++ ..|+  .+|+|+|+++...
T Consensus       105 ~~l~~~~~~~~~~~L~~-~~k~--~Gg~l~v~ir~r~  138 (155)
T cd08690         105 EPLETKCEIHESVDLMD-GRKA--TGGKLEVKVRLRE  138 (155)
T ss_pred             ccccccCcceEEEEhhh-CCCC--cCCEEEEEEEecC
Confidence            99988878889999964 3343  5899999998643

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.63  E-value=7.2e-16  Score=140.75  Aligned_cols=108  Identities=29%  Similarity=0.469  Sum_probs=91.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~--~~   92 (551)
                      |+|.|+|++|++|++++..+.                                          +||||+|.+.  +  ..
T Consensus        15 ~~L~v~vi~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~~~   52 (136)
T cd08405          15 NRITVNIIKARNLKAMDINGT------------------------------------------SDPYVKVWLMYKDKRVE   52 (136)
T ss_pred             CeEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCCccc
Confidence            899999999999998776543                                          8999999983  2  23


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k  168 (551)
                      ..||++++++.||+|||+|.|.+...   ...|.|+|+|.+.++ +++||.+.|++.+.  |...+.|++++...++|..
T Consensus        53 ~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~  130 (136)
T cd08405          53 KKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVA  130 (136)
T ss_pred             cccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchh
Confidence            56999999999999999999987542   357999999999998 89999999999876  7778899999888888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.63  E-value=1.6e-15  Score=136.84  Aligned_cols=102  Identities=24%  Similarity=0.479  Sum_probs=86.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-----   90 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~-----   90 (551)
                      .|.|.|+|++|+||++++..+                                          .+||||+|+|..     
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~------------------------------------------~~dpyVKv~Llp~~~~~   50 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPE------------------------------------------NSKVYVRVALLPCSSST   50 (124)
T ss_pred             CCEEEEEEeEecCCcccccCC------------------------------------------CCCeEEEEEEccCCCCC
Confidence            378999999999999876422                                          289999999843     


Q ss_pred             eeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccc-ccceeeeEEEc
Q 008859           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDI  159 (551)
Q Consensus        91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~-~g~~i~~w~~L  159 (551)
                      ....||++.+++.||+|||+|.|++.+.   ...|.|+||+.+.++ +++||.+.|++.++. +++....||+|
T Consensus        51 ~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          51 SCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            2367999999999999999999998874   567999999999987 899999999999995 44568889975

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.62  E-value=4.9e-16  Score=141.93  Aligned_cols=108  Identities=27%  Similarity=0.448  Sum_probs=92.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e--
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A--   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~--   91 (551)
                      .+.|.|+|++|++|+.+|..+.                                          +||||+|.+..  .  
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~   51 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGL------------------------------------------ADPYVKVNLYYGKKRI   51 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCC------------------------------------------CCeEEEEEEEcCCcee
Confidence            4789999999999998876543                                          89999999843  2  


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                      ...||+|++++.||.|||+|.|.+...   ...|+|+|||.+.++ +++||.+.|++..  .++..+.|++|++..|++.
T Consensus        52 ~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i  129 (136)
T cd08404          52 SKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI  129 (136)
T ss_pred             eeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence            246899999999999999999998753   456899999999998 8999999999988  4777899999988777765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.62  E-value=5.4e-16  Score=141.20  Aligned_cols=109  Identities=33%  Similarity=0.497  Sum_probs=92.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~--~   91 (551)
                      +|.|.|+|++|++|++++..+.                                          +||||+|++.  +  .
T Consensus        13 ~~~L~V~v~~A~~L~~~d~~g~------------------------------------------~dpyvkv~l~~~~~~~   50 (134)
T cd08403          13 AGRLTLTIIKARNLKAMDITGF------------------------------------------SDPYVKVSLMCEGRRL   50 (134)
T ss_pred             CCEEEEEEEEeeCCCccccCCC------------------------------------------CCceEEEEEEeCCccc
Confidence            5889999999999999887653                                          8999999984  2  2


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                      ...||++++++.||.|||+|.|.+...   ...|.|+|+|.+.+| +++||.+.|++.  ..++..+.|++++...+++.
T Consensus        51 ~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~  128 (134)
T cd08403          51 KKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI  128 (134)
T ss_pred             ceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence            357999999999999999999998654   235899999999998 899999999987  44666789999998888875


Q ss_pred             C
Q 008859          168 K  168 (551)
Q Consensus       168 k  168 (551)
                      .
T Consensus       129 ~  129 (134)
T cd08403         129 A  129 (134)
T ss_pred             e
Confidence            3

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.62  E-value=5.1e-15  Score=134.17  Aligned_cols=102  Identities=29%  Similarity=0.403  Sum_probs=84.7

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeE
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVA   94 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~   94 (551)
                      +.|.|+|++|++|+.++..+.                                         ++||||+|.+..  ....
T Consensus        16 ~~L~V~Vi~a~~L~~~~~~~~-----------------------------------------~~DpyV~v~l~~~~~~~~   54 (128)
T cd08388          16 KALLVNIIECRDLPAMDEQSG-----------------------------------------TSDPYVKLQLLPEKEHKV   54 (128)
T ss_pred             CEEEEEEEEeECCCCCCCCCC-----------------------------------------CcCCEEEEEEeCCcCcee
Confidence            689999999999998775411                                         289999999852  4457


Q ss_pred             EeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccccc--ceeeeEEEc
Q 008859           95 RTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDI  159 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g--~~i~~w~~L  159 (551)
                      ||++++++.||+|||+|.|. +...   ...|.|+|+|.+.++ +++||.+.||+.++..+  +....|.+|
T Consensus        55 kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          55 KTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             eccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence            99999999999999999995 4322   346999999999887 89999999999998643  678899998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.62  E-value=7.8e-16  Score=139.32  Aligned_cols=108  Identities=31%  Similarity=0.527  Sum_probs=93.4

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~   92 (551)
                      |.|.|+|++|++|++++..+.                                          +||||+|.+.+    ..
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~   51 (134)
T cd00276          14 ERLTVVVLKARNLPPSDGKGL------------------------------------------SDPYVKVSLLQGGKKLK   51 (134)
T ss_pred             CEEEEEEEEeeCCCCccCCCC------------------------------------------CCcEEEEEEEcCCeEee
Confidence            789999999999998764432                                          89999999854    24


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k  168 (551)
                      ..||++++++.||.|||+|.|.+...   ...|.|+|+|.+.++ +++||.+.|++++  .+...+.|++|++..+++..
T Consensus        52 ~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~  129 (134)
T cd00276          52 KKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA  129 (134)
T ss_pred             eecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE
Confidence            57999999999999999999998875   367999999999876 8999999999999  68889999999888777653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.62  E-value=4.3e-16  Score=143.04  Aligned_cols=112  Identities=22%  Similarity=0.348  Sum_probs=93.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe----
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA----   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~----   91 (551)
                      -|.|.|+|++|+||+.+|....                                        .++||||+|++...    
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~----------------------------------------~~~DpYVKv~l~~~~~k~   53 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLL----------------------------------------LGIDVSVKVTLKHQNAKL   53 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCC----------------------------------------CCCCeEEEEEEEcCCccc
Confidence            3889999999999998874211                                        12899999998542    


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                      ...||++++++.||+|||.|.|.+++.   ...|.|+|+|.|.++ +++||.+.+++..  .|+..+.|..++...+++.
T Consensus        54 ~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v  131 (138)
T cd08407          54 KKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI  131 (138)
T ss_pred             ceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence            245999999999999999999999875   456999999999998 8999999999974  6888899999998888876


Q ss_pred             CC
Q 008859          168 KP  169 (551)
Q Consensus       168 k~  169 (551)
                      ..
T Consensus       132 a~  133 (138)
T cd08407         132 AM  133 (138)
T ss_pred             hE
Confidence            43

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.62  E-value=3.7e-15  Score=131.31  Aligned_cols=81  Identities=23%  Similarity=0.356  Sum_probs=71.7

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCC-----CeEEEEEEecCCCC-CceeEEEEeeccccccc---
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL-----SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG---  150 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~-----~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g---  150 (551)
                      +||||+|.+.+++ .||++++++.||.|||+|.|.+..+.     ..|.|+|+|.+.++ +++||.+.|+++++..+   
T Consensus        21 ~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~   99 (111)
T cd04011          21 IDPVVKVEVGGQK-KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDH   99 (111)
T ss_pred             CCCEEEEEECCEe-eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCC
Confidence            8999999999876 59999999999999999999986643     56999999999987 79999999999999765   


Q ss_pred             ceeeeEEEccC
Q 008859          151 ELISRWYDIIA  161 (551)
Q Consensus       151 ~~i~~w~~Ll~  161 (551)
                      .....|++|.+
T Consensus       100 ~~~~~w~~L~~  110 (111)
T cd04011         100 AFLRKWLLLTD  110 (111)
T ss_pred             cceEEEEEeeC
Confidence            45789999965

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.61  E-value=3e-15  Score=139.70  Aligned_cols=98  Identities=26%  Similarity=0.472  Sum_probs=85.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe----
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA----   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~----   91 (551)
                      .+.|.|+|++|++|+++|..+.                                          +||||+|.+...    
T Consensus        27 ~~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~   64 (153)
T cd08676          27 IFVLKVTVIEAKGLLAKDVNGF------------------------------------------SDPYCMLGIVPASRER   64 (153)
T ss_pred             eEEEEEEEEeccCCcccCCCCC------------------------------------------CCceEEEEEccccccc
Confidence            3689999999999999886654                                          899999998531    


Q ss_pred             ------------------------eeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeeccc
Q 008859           92 ------------------------TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHT  146 (551)
Q Consensus        92 ------------------------~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~  146 (551)
                                              .++||++++++.||.|||+|.|++.+. ...|.|+|||.+   +++||.+.+++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~  141 (153)
T cd08676          65 NSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKD  141 (153)
T ss_pred             ccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHH
Confidence                                    357999999999999999999999875 457999999998   8999999999999


Q ss_pred             ccccceeeeEEEc
Q 008859          147 IATGELISRWYDI  159 (551)
Q Consensus       147 l~~g~~i~~w~~L  159 (551)
                      +. +..+++||+|
T Consensus       142 l~-~~~~d~W~~L  153 (153)
T cd08676         142 LP-SCGLDSWFKL  153 (153)
T ss_pred             hC-CCCCCCeEeC
Confidence            98 4458999986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.61  E-value=4.8e-15  Score=132.50  Aligned_cols=102  Identities=25%  Similarity=0.448  Sum_probs=88.1

Q ss_pred             eeEEEEEEEEeecCCCCC-CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Cee
Q 008859           16 HGDLDLKIIRARRLPNMD-MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QAT   92 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~   92 (551)
                      .+.|.|+|++|++|++++ ..+.                                          +||||+|++.  +..
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~   50 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAH------------------------------------------CDPFVKVCLLPDERR   50 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCC------------------------------------------CCcEEEEEEeeCCCC
Confidence            367999999999999876 3332                                          8999999983  345


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      .+||++++++.||+|||.|.|.+...   ...|.|+|||.+.++ +++||++.++++++........|++|
T Consensus        51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L  121 (123)
T cd08390          51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL  121 (123)
T ss_pred             ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence            67999999999999999999998664   357999999999987 89999999999999988888899998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.61  E-value=8.7e-16  Score=140.74  Aligned_cols=110  Identities=23%  Similarity=0.357  Sum_probs=91.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--ee-
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT-   92 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~-   92 (551)
                      .+.|.|+|++|++|+.+|..+.                                          +||||+|++..  .+ 
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~------------------------------------------~DpyVkv~l~~~~~~~   51 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTT------------------------------------------ADPFVKVYLLQDGRKI   51 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCccc
Confidence            3689999999999998775432                                          89999999942  22 


Q ss_pred             -eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           93 -VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        93 -v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                       ..||+|++++.||+|||+|.|.+...   ...|.|+|+|.|.++ +++||++.|+..  ..|+..+.|..++...+++.
T Consensus        52 ~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v  129 (136)
T cd08406          52 SKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPV  129 (136)
T ss_pred             cccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCee
Confidence             35899999999999999999998764   456999999999888 899999999776  45778899999988877766


Q ss_pred             CC
Q 008859          168 KP  169 (551)
Q Consensus       168 k~  169 (551)
                      ..
T Consensus       130 ~~  131 (136)
T cd08406         130 AM  131 (136)
T ss_pred             eE
Confidence            43

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.61  E-value=3.9e-15  Score=136.52  Aligned_cols=100  Identities=21%  Similarity=0.417  Sum_probs=86.7

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---eeeEE
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---ATVAR   95 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---~~v~r   95 (551)
                      |.|+|++|++|+.+ ..+.                                          +||||+|.+..   ..+.|
T Consensus         1 L~V~Vi~A~~L~~~-~~g~------------------------------------------~dPyv~v~~~~~~~~~~~r   37 (137)
T cd08675           1 LSVRVLECRDLALK-SNGT------------------------------------------CDPFARVTLNYSSKTDTKR   37 (137)
T ss_pred             CEEEEEEccCCCcc-cCCC------------------------------------------CCcEEEEEEecCCcCCeec
Confidence            67999999999876 3332                                          89999999984   45689


Q ss_pred             eeecCCCCCCeEeeEEEEeecCC----------------CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEE
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD  158 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~----------------~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~  158 (551)
                      |++++++.||.|||+|.|++...                ...|.|+|||.+.++ +++||++.|++.++........||+
T Consensus        38 T~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~  117 (137)
T cd08675          38 TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYF  117 (137)
T ss_pred             cceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEe
Confidence            99999999999999999998775                357999999999986 8999999999999987778899999


Q ss_pred             ccC
Q 008859          159 IIA  161 (551)
Q Consensus       159 Ll~  161 (551)
                      |..
T Consensus       118 L~~  120 (137)
T cd08675         118 LQP  120 (137)
T ss_pred             cCC
Confidence            843

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.60  E-value=1.3e-14  Score=130.30  Aligned_cols=116  Identities=29%  Similarity=0.521  Sum_probs=95.8

Q ss_pred             EEEEEEEEeecCCCCCC--CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 008859           18 DLDLKIIRARRLPNMDM--MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-----   90 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~-----   90 (551)
                      .|.|+|++|++|++++.  .+                                          .+||||+|++.+     
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~------------------------------------------~~dpyv~v~l~~~~~~~   40 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGS------------------------------------------IVDPYVEVEIHGLPADD   40 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCC------------------------------------------ccCCEEEEEEEeCCCCC
Confidence            58999999999998762  22                                          179999999942     


Q ss_pred             eeeEEeeecCCCC-CCeEeeEEEEeecCCC-CeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859           91 ATVARTRVLKNSQ-EPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        91 ~~v~rTrvi~ns~-nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k  168 (551)
                      ....||++++++. ||.|||+|.|.+..+. ..|.|+|+|.+.+++++||.+.++++++..|   ..|++|++..|++. 
T Consensus        41 ~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~-  116 (128)
T cd00275          41 SAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPL-  116 (128)
T ss_pred             CCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCC-
Confidence            3447999988765 9999999999988664 4589999999988889999999999999766   47899988888743 


Q ss_pred             CCceEEEEeee
Q 008859          169 PGASIQLELKF  179 (551)
Q Consensus       169 ~~G~L~lsl~f  179 (551)
                      ..|.|.+.+++
T Consensus       117 ~~~~l~v~~~~  127 (128)
T cd00275         117 ELSTLFVHIDI  127 (128)
T ss_pred             cceeEEEEEEE
Confidence            56889888875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.60  E-value=6.6e-15  Score=133.37  Aligned_cols=108  Identities=26%  Similarity=0.430  Sum_probs=91.9

Q ss_pred             EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 008859           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--   90 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--   90 (551)
                      -+..|.|.|+|++|++|+..+..+.                                          +||||+|.+.+  
T Consensus         9 ~~~~~~l~v~i~~a~nL~~~~~~~~------------------------------------------~dpyv~v~~~~~~   46 (131)
T cd04026           9 SVKDNKLTVEVREAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDP   46 (131)
T ss_pred             EECCCEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCcEEEEEEcCC
Confidence            4567999999999999997664332                                          89999999963  


Q ss_pred             --eeeEEeeecCCCCCCeEeeEEEEeecCC--CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCC
Q 008859           91 --ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (551)
Q Consensus        91 --~~v~rTrvi~ns~nP~WnE~F~i~vah~--~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~  163 (551)
                        ...+||++++++.+|.|||+|.|++...  ...|.|+|||.+.++ +++||.+.++++++... ..+.||+|+++.
T Consensus        47 ~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~  123 (131)
T cd04026          47 KNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE  123 (131)
T ss_pred             CCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence              3568999999999999999999998764  457999999999887 89999999999999855 788999997653

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>PHA02820 phospholipase-D-like protein; Provisional

Probab=99.59  E-value=1.2e-14  Score=156.50  Aligned_cols=145  Identities=14%  Similarity=0.087  Sum_probs=107.0

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      ...++.+.+.|.+||++|+|+++.|.+      ++...  +..+.+|.++|++||+|||+||||+ |..+.         
T Consensus        25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~------~d~~~--~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~---------   86 (424)
T PHA02820         25 LSTFNFWREILSNTTKTLDISSFYWSL------SDEVG--TNFGTMILNEIIQLPKRGVRVRIAV-NKSNK---------   86 (424)
T ss_pred             CCHHHHHHHHHHhhCcEEEEEeEEEec------Ccccc--chhHHHHHHHHHHHHHCCCEEEEEE-CCCCC---------
Confidence            467999999999999999999996532      11100  0124789999999999999999996 85321         


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                            .....+.|+.+||++..+...  .          ...+++|+|++|||++        ++|+||+|+.+ |+-+
T Consensus        87 ------~~~~~~~L~~aGv~v~~~~~~--~----------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~  139 (424)
T PHA02820         87 ------PLKDVELLQMAGVEVRYIDIT--N----------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT  139 (424)
T ss_pred             ------chhhHHHHHhCCCEEEEEecC--C----------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence                  112235677899998753211  0          1235789999999998        99999999965 5432


Q ss_pred             CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEE--eCHHHHHHHHHHHHHHHhhcC
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATK  461 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i--~GPaa~dv~~~F~~rW~~~~~  461 (551)
                                                     ..+++++++  +||+|.++...|++.|+..++
T Consensus       140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~  171 (424)
T PHA02820        140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVN  171 (424)
T ss_pred             -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhcc
Confidence                                           124677776  799999999999999997653

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.58  E-value=9.5e-15  Score=132.27  Aligned_cols=89  Identities=27%  Similarity=0.415  Sum_probs=76.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|+. +.++.                                          +||||+|.+.+. ++||
T Consensus        28 ~~L~V~V~~A~~L~~-d~~g~------------------------------------------~DPYVkV~~~~~-~~kT   63 (127)
T cd04032          28 ATLTVTVLRATGLWG-DYFTS------------------------------------------TDGYVKVFFGGQ-EKRT   63 (127)
T ss_pred             EEEEEEEEECCCCCc-CcCCC------------------------------------------CCeEEEEEECCc-cccC
Confidence            799999999999973 44332                                          899999999877 5799


Q ss_pred             eecCCCCCCeEeeEEEEeecC--CCCeEEEEEEecCCCC-CceeEEEEeecccccc
Q 008859           97 RVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT  149 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah--~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~  149 (551)
                      ++++++.||+|||+|.|....  ....|.|+|||.+.++ +++||++.++++....
T Consensus        64 ~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032          64 EVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             ceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence            999999999999999997533  3668999999999997 8999999999986653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.58  E-value=1e-14  Score=131.47  Aligned_cols=100  Identities=22%  Similarity=0.385  Sum_probs=86.0

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeE
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVA   94 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~   94 (551)
                      +.|.|+|++|++|++++..+.                                          +||||++.+..  ....
T Consensus        16 ~~L~V~Vi~a~nL~~~~~~~~------------------------------------------~d~yVk~~llp~~~~~~   53 (124)
T cd08389          16 RKLTVTVIRAQDIPTKDRGGA------------------------------------------SSWQVHLVLLPSKKQRA   53 (124)
T ss_pred             CEEEEEEEEecCCCchhcCCC------------------------------------------CCcEEEEEEccCCccee
Confidence            689999999999998874332                                          79999988733  3457


Q ss_pred             EeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           95 RTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ||+|.++ .||+|||+|.|+ +...   ...|.|+|+|.+.++ +++||.+.||++++..++....|++|
T Consensus        54 kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L  122 (124)
T cd08389          54 KTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL  122 (124)
T ss_pred             ecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence            9999988 999999999998 5543   457999999999998 89999999999999888889999998

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.58  E-value=2.7e-14  Score=128.83  Aligned_cols=97  Identities=25%  Similarity=0.426  Sum_probs=78.8

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccce-----e
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-----I  153 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~-----i  153 (551)
                      +||||.|.+.+...+||++++++.||.|||+|.|.+. ....|.|+|||.+.++ +++||.+.+++.++..+..     +
T Consensus        22 ~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~  100 (125)
T cd04021          22 PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENV  100 (125)
T ss_pred             CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccce
Confidence            8999999998776789999999999999999999985 4568999999999987 8999999999999885322     4


Q ss_pred             eeEEEccCCCCCCCCCCceEEEEe
Q 008859          154 SRWYDIIAPSGSPPKPGASIQLEL  177 (551)
Q Consensus       154 ~~w~~Ll~~~gkp~k~~G~L~lsl  177 (551)
                      ..|+++..++.-..+..|+|.+++
T Consensus       101 ~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021         101 KLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEccCCCcceeeeeEEEEe
Confidence            569998644310234568888765

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.58  E-value=1.3e-14  Score=134.43  Aligned_cols=94  Identities=30%  Similarity=0.625  Sum_probs=83.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r   95 (551)
                      .|.|.|+|++|++|+..+. +                                          ++||||+|.+++.. +|
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~------------------------------------------~sDPYV~v~~g~~~-~k   36 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-T------------------------------------------SSDPYVVLTLGNQK-VK   36 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-C------------------------------------------CcCcEEEEEECCEE-EE
Confidence            3899999999999997664 3                                          28999999998765 79


Q ss_pred             eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i  153 (551)
                      |++++++.||+|||.|.|.+..+...+.|+|||.+.++ +++||.+.+++.++......
T Consensus        37 T~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~   95 (145)
T cd04038          37 TRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL   95 (145)
T ss_pred             eeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence            99999999999999999999998888999999999998 89999999999998865444

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.58  E-value=7.3e-15  Score=138.58  Aligned_cols=103  Identities=26%  Similarity=0.409  Sum_probs=85.1

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----C
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----Q   90 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~----~   90 (551)
                      -.|.|.|+|++|++|+.++..+.                                          +||||+|.+.    +
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------------------~DPYVkv~l~~~~~~   62 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGT------------------------------------------SDSFVKCYLLPDKSK   62 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCC
Confidence            35889999999999998875443                                          8999999883    3


Q ss_pred             eeeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ..+.||+|++++.||.|||+|.|.+...    ...|.|+|||.+.++ +++||.+.+++.++..-...+.|+++
T Consensus        63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~  136 (162)
T cd04020          63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS  136 (162)
T ss_pred             CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence            4568999999999999999999986433    346999999999998 89999999999998654445666665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.57  E-value=5.8e-15  Score=134.92  Aligned_cols=109  Identities=23%  Similarity=0.427  Sum_probs=88.6

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC-C---ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP-Q---AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~-~---~~   92 (551)
                      |.|.|+|++|++|+.+|..+.                                          +||||+|.+. +   ..
T Consensus        14 ~~L~V~vi~a~~L~~~d~~g~------------------------------------------~DPyV~v~l~~~~~~~~   51 (135)
T cd08410          14 GRLNVDIIRAKQLLQTDMSQG------------------------------------------SDPFVKIQLVHGLKLIK   51 (135)
T ss_pred             CeEEEEEEEecCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcccc
Confidence            899999999999998886553                                          8999999973 2   23


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k  168 (551)
                      ..+|++++++.||+|||+|.|.+...   ...|.|+|+|.+..+ +++||.+.|...... ++..+.|+.|+...+++..
T Consensus        52 ~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~~~  130 (135)
T cd08410          52 TKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTAVE  130 (135)
T ss_pred             eEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCEee
Confidence            46999999999999999999998653   235899999999887 899999987653322 3357889999988888764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.56  E-value=7e-15  Score=133.94  Aligned_cols=110  Identities=21%  Similarity=0.352  Sum_probs=88.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      -|.|.|+|++|+||++++...                                          +.||||+|++-.    .
T Consensus        13 ~~rLtV~VikarnL~~~~~~~------------------------------------------~~dpYVKV~L~~~~k~~   50 (135)
T cd08692          13 NSRIQLQILEAQNLPSSSTPL------------------------------------------TLSFFVKVGMFSTGGLL   50 (135)
T ss_pred             CCeEEEEEEEccCCCcccCCC------------------------------------------CCCcEEEEEEEECCCcc
Confidence            478999999999999864211                                          279999999842    2


Q ss_pred             eeEEeeecCCCC-CCeEeeEEEEeecCCCC--eEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           92 TVARTRVLKNSQ-EPVWNEHFNIPLAHPLS--NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        92 ~v~rTrvi~ns~-nP~WnE~F~i~vah~~~--~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                      ...+|++++++. +|+|||+|.|.++.+..  .+.++|+|.+..+ +++||++.++.+.. .++..++|.+++...+++.
T Consensus        51 ~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i  129 (135)
T cd08692          51 YKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV  129 (135)
T ss_pred             eeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence            356999999985 69999999999988644  4678888988887 89999999999863 4566899999988877775


Q ss_pred             C
Q 008859          168 K  168 (551)
Q Consensus       168 k  168 (551)
                      .
T Consensus       130 a  130 (135)
T cd08692         130 T  130 (135)
T ss_pred             e
Confidence            3

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.56  E-value=4.6e-15  Score=136.03  Aligned_cols=108  Identities=20%  Similarity=0.414  Sum_probs=91.7

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e--e
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A--T   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~--~   92 (551)
                      +.|.|+|++|++|+.++ .+.                                          +||||+|.+..  .  .
T Consensus        15 ~~L~V~V~~a~nL~~~~-~~~------------------------------------------~d~yVkv~l~~~~~~~~   51 (137)
T cd08409          15 NRLTVVVLRARGLRQLD-HAH------------------------------------------TSVYVKVSLMIHNKVVK   51 (137)
T ss_pred             CeEEEEEEEecCCCccc-CCC------------------------------------------CCeEEEEEEEECCEEee
Confidence            78999999999999877 432                                          89999999853  1  2


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                      ..||++++++.||+|||+|.|.+...   ...|.|+|++.+.++ +++||++.|+......|+..+.|..++...+++.
T Consensus        52 ~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i  130 (137)
T cd08409          52 TKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELI  130 (137)
T ss_pred             eeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCce
Confidence            45999999999999999999998753   356999999999877 8999999999887788888999999987766654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd00138 PLDc Phospholipase D

Probab=99.55  E-value=9.2e-14  Score=131.48  Aligned_cols=145  Identities=22%  Similarity=0.243  Sum_probs=108.0

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      .+.++.+.++|.+|+++|+|+.|.+++..    ..       ....|.+.|++++++||+|+||+++.. +...      
T Consensus        20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~~-------~~~~l~~~L~~a~~rGv~V~il~~~~~-~~~~------   81 (176)
T cd00138          20 RSDLDALLEAISNAKKSIYIASFYLSPLI----TE-------YGPVILDALLAAARRGVKVRILVDEWS-NTDL------   81 (176)
T ss_pred             chHHHHHHHHHHhhheEEEEEEeEecccc----cc-------cchHHHHHHHHHHHCCCEEEEEEcccc-cCCc------
Confidence            67899999999999999999999765332    01       147999999999999999999984443 2210      


Q ss_pred             CcccCCcHHHHhHhcCC---CcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccc
Q 008859          321 GVMATHDEETKKFFKHS---SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR  397 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~---~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R  397 (551)
                          .......+.++..   ++++...+....            ...++|+|++|||++        ++++||.|+....
T Consensus        82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~  137 (176)
T cd00138          82 ----KISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRS  137 (176)
T ss_pred             ----hHHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence                0112334445443   777664321100            235889999999998        9999999999844


Q ss_pred             cCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH--HHHHHHHHHHHHHHhh
Q 008859          398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKA  459 (551)
Q Consensus       398 ~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP--aa~dv~~~F~~rW~~~  459 (551)
                      +.                                .++|..+.+++|  +|.++...|.+.|+..
T Consensus       138 ~~--------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~  169 (176)
T cd00138         138 LT--------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST  169 (176)
T ss_pred             hh--------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence            32                                467999999999  7999999999999864

Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.53  E-value=3.6e-14  Score=129.22  Aligned_cols=91  Identities=30%  Similarity=0.456  Sum_probs=79.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC------
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ------   90 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~------   90 (551)
                      +.|.|+|++|++|+.++..+.                                          +||||+|++.+      
T Consensus        16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------------------~dPyv~v~l~~~~~~~~   53 (133)
T cd04009          16 QSLRVEILNARNLLPLDSNGS------------------------------------------SDPFVKVELLPRHLFPD   53 (133)
T ss_pred             CEEEEEEEEeeCCCCcCCCCC------------------------------------------CCCEEEEEEECCCcCcc
Confidence            679999999999998876543                                          89999999853      


Q ss_pred             eeeEEeeecCCCCCCeEeeEEEEeecCC-----CCeEEEEEEecCCCC-CceeEEEEeecccccc
Q 008859           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT  149 (551)
Q Consensus        91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~-----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~  149 (551)
                      ....||++++++.||+|||+|.|++...     ...|.|+|||.+.++ +++||.+.+++.++..
T Consensus        54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            3468999999999999999999998763     457999999999998 8999999999999884

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.53  E-value=4.6e-14  Score=126.05  Aligned_cols=80  Identities=25%  Similarity=0.371  Sum_probs=70.5

Q ss_pred             CCcEEEEEECCee------eEEeeecCCCCCCeEeeEEEEeecC-CCCeEEEEEEecCC----CC-CceeEEEEeecccc
Q 008859           80 SDPYVTVVVPQAT------VARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDV----FG-AQIIGTAAIPAHTI  147 (551)
Q Consensus        80 sDpYvtV~l~~~~------v~rTrvi~ns~nP~WnE~F~i~vah-~~~~l~f~Vkd~d~----~g-~~lIG~v~Ipl~~l  147 (551)
                      +||||+|.+.+..      ++||++++++.||+|||+|.|.+.. ....|.|+|||.+.    ++ +++||.+.+++.++
T Consensus        21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l  100 (120)
T cd04048          21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI  100 (120)
T ss_pred             CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH
Confidence            8999999996643      6899999999999999999998543 45579999999997    65 89999999999999


Q ss_pred             cccceeeeEEEc
Q 008859          148 ATGELISRWYDI  159 (551)
Q Consensus       148 ~~g~~i~~w~~L  159 (551)
                      ..++....|++|
T Consensus       101 ~~~~~~~~~~~l  112 (120)
T cd04048         101 VSSPGQKLTLPL  112 (120)
T ss_pred             hcCCCcEEEEEc
Confidence            988888889999

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=8.4e-14  Score=149.87  Aligned_cols=128  Identities=27%  Similarity=0.395  Sum_probs=107.8

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--ee
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~   92 (551)
                      -+..|.|+|++|++|+.+| .+.                                         ++||||++++..  ..
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d-~~g-----------------------------------------~sdpyVK~~llPdk~~  202 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKD-RGG-----------------------------------------TSDPYVKVYLLPDKKG  202 (421)
T ss_pred             cCCEEEEEEEEecCCCccc-CCC-----------------------------------------CCCCeeEEEEcCCCCC
Confidence            4577999999999999988 321                                         389999999954  34


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k  168 (551)
                      ..+|+|.+++.||.|||+|.|.+++.   ...|.|+|+|.|+|+ +++||.+.+|+..+........|.++.........
T Consensus       203 k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~  282 (421)
T KOG1028|consen  203 KFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEE  282 (421)
T ss_pred             cceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCccc
Confidence            57999999999999999999998886   567999999999999 89999999999998877778889999665444333


Q ss_pred             CCceEEEEeeeeccCC
Q 008859          169 PGASIQLELKFTPCDK  184 (551)
Q Consensus       169 ~~G~L~lsl~f~p~~~  184 (551)
                      ..|+|.++|+|.|.+.
T Consensus       283 ~~gel~~sL~Y~p~~g  298 (421)
T KOG1028|consen  283 LAGELLLSLCYLPTAG  298 (421)
T ss_pred             ccceEEEEEEeecCCC
Confidence            4489999999999843

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.51  E-value=1.9e-14  Score=132.18  Aligned_cols=110  Identities=18%  Similarity=0.341  Sum_probs=89.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---e-
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A-   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---~-   91 (551)
                      .|.|.|+|++|+||+.++..+.                                          +||||+|.+..   . 
T Consensus        14 ~~~L~V~VikarnL~~~~~~~~------------------------------------------~dpyVkv~llp~~~~~   51 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNKA------------------------------------------PDTYVKLTLLNSDGQE   51 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCC------------------------------------------CCeeEEEEEEeCCCcc
Confidence            3899999999999998775432                                          89999999842   2 


Q ss_pred             -eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCC
Q 008859           92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (551)
Q Consensus        92 -~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp  166 (551)
                       ...||++.+++.||+|||+|.|++...   ...|.|+|+|.+.++ +++||++.|++...- .+..+.|..++...+++
T Consensus        52 ~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~  130 (138)
T cd08408          52 ISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQ  130 (138)
T ss_pred             eeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCE
Confidence             235999999999999999999998864   457999999999887 899999999887432 23567899998877776


Q ss_pred             CC
Q 008859          167 PK  168 (551)
Q Consensus       167 ~k  168 (551)
                      ..
T Consensus       131 v~  132 (138)
T cd08408         131 VC  132 (138)
T ss_pred             Ee
Confidence            53

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.50  E-value=1.5e-13  Score=123.03  Aligned_cols=100  Identities=29%  Similarity=0.405  Sum_probs=82.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~   92 (551)
                      +.|.|+|++|++|++++..+.                                          +||||+|.+.+    ..
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyv~v~~~~~~~~~~   52 (123)
T cd04035          15 SALHCTIIRAKGLKAMDANGL------------------------------------------SDPYVKLNLLPGASKAT   52 (123)
T ss_pred             CEEEEEEEEeeCCCCCCCCCC------------------------------------------CCceEEEEEecCCCCCC
Confidence            689999999999998775443                                          89999999832    34


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEE
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYD  158 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~  158 (551)
                      ++||++++++.||.|||+|.|.....    ...+.|+|||.+.+++++||.+.+++.++..++..+-|+.
T Consensus        53 ~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          53 KLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             ceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence            68999999999999999999963322    3579999999988888999999999999997766655543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.50  E-value=3.7e-13  Score=123.46  Aligned_cols=114  Identities=24%  Similarity=0.383  Sum_probs=89.3

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--e-----
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--A-----   91 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~-----   91 (551)
                      ..|++++|++|+ ++.+++                                          +||||+|++..  .     
T Consensus         3 ~~~~~~~A~~L~-~~~fg~------------------------------------------~DPyvki~~~~~~~~~~~~   39 (137)
T cd08691           3 FSLSGLQARNLK-KGMFFN------------------------------------------PDPYVKISIQPGKRHIFPA   39 (137)
T ss_pred             EEEEEEEeCCCC-CccCCC------------------------------------------CCceEEEEEECCCcccccc
Confidence            468999999998 676654                                          89999999953  1     


Q ss_pred             -----eeEEeeecCCCCCCeE-eeEEEEeecCCCCeEEEEEEecCCCC----CceeEEEEeecccccccc---eeeeEEE
Q 008859           92 -----TVARTRVLKNSQEPVW-NEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIATGE---LISRWYD  158 (551)
Q Consensus        92 -----~v~rTrvi~ns~nP~W-nE~F~i~vah~~~~l~f~Vkd~d~~g----~~lIG~v~Ipl~~l~~g~---~i~~w~~  158 (551)
                           ...||++++++.||+| ||+|.|.+.. ...|+|+|+|.+..+    +++||.+.||+.++..+.   ....|++
T Consensus        40 ~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~  118 (137)
T cd08691          40 LPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYT  118 (137)
T ss_pred             cccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEE
Confidence                 2579999999999999 9999999864 457999999976543    699999999999998653   4677999


Q ss_pred             ccCCCCCCCCCCceEEEEe
Q 008859          159 IIAPSGSPPKPGASIQLEL  177 (551)
Q Consensus       159 Ll~~~gkp~k~~G~L~lsl  177 (551)
                      +-.. +--....|+|.+.+
T Consensus       119 l~k~-~~~s~v~G~~~l~~  136 (137)
T cd08691         119 LGRR-TPTDHVSGQLTFRF  136 (137)
T ss_pred             CCcC-CCCCcEEEEEEEEe
Confidence            8433 22334567777654

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.49  E-value=3.3e-13  Score=120.02  Aligned_cols=66  Identities=33%  Similarity=0.531  Sum_probs=57.1

Q ss_pred             CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEec-------CCCC-CceeEEEEeeccc
Q 008859           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-------DVFG-AQIIGTAAIPAHT  146 (551)
Q Consensus        80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~-------d~~g-~~lIG~v~Ipl~~  146 (551)
                      +||||++.+..    ...+||++++++.||+|||+|.|.+.. ...|.|+|||.       |..+ +++||++.|.++.
T Consensus        15 sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          15 ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence            89999998854    357999999999999999999999975 66899999997       4556 8999999998754

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.48  E-value=2.9e-13  Score=121.89  Aligned_cols=88  Identities=28%  Similarity=0.475  Sum_probs=77.3

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee-eEEee
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VARTR   97 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~-v~rTr   97 (551)
                      |.|+|++|++|+++|..+.                                          +||||+|.+.+.. ..||+
T Consensus         2 lrV~Vi~a~~L~~~d~~g~------------------------------------------~DPYv~v~~~~~~~~~kT~   39 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGK------------------------------------------SDPYLKIKLGKKKINDRDN   39 (124)
T ss_pred             EEEEEEECcCCCCCCCCCC------------------------------------------CCcEEEEEECCeeccceee
Confidence            7899999999999886553                                          8999999998754 36899


Q ss_pred             ecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859           98 VLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (551)
Q Consensus        98 vi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~  148 (551)
                      +++++.||+|||+|.|.+..+ ...|.|+|||.+.++ +++||++.|++++..
T Consensus        40 ~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~   92 (124)
T cd04037          40 YIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF   92 (124)
T ss_pred             EEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence            999999999999999998765 457999999999997 899999999998775

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.47  E-value=1.3e-13  Score=167.34  Aligned_cols=119  Identities=22%  Similarity=0.450  Sum_probs=101.6

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~   94 (551)
                      |-|.|.|+|++|++|. .+ ++                                          ++||||.|.+++....
T Consensus      1978 ~~G~L~V~V~~a~nl~-~~-~~------------------------------------------~sdPyv~l~~g~~~~~ 2013 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK-QS-MG------------------------------------------NTNAFCKLTLGNGPPR 2013 (2102)
T ss_pred             CCcceEEEEeeccccc-cc-cC------------------------------------------CCCCeEEEEECCCCcc
Confidence            5699999999999997 33 22                                          2899999999965445


Q ss_pred             EeeecCCCCCCeEeeEEEEeecCCC--CeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCce
Q 008859           95 RTRVLKNSQEPVWNEHFNIPLAHPL--SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS  172 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~vah~~--~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~  172 (551)
                      ||+|++++.||+|||.|+|.+..+.  ..+.|+|||+|.|+++.||.+.|++.++..+..+.+||+|.+. |+   ..|+
T Consensus      2014 kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~-~~---k~G~ 2089 (2102)
T PLN03200       2014 QTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPE-SN---KDGS 2089 (2102)
T ss_pred             cccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCcc-cc---cCCC
Confidence            9999999999999999998887764  5699999999999988999999999999999999999999643 33   2356


Q ss_pred             ---EEEEeeeec
Q 008859          173 ---IQLELKFTP  181 (551)
Q Consensus       173 ---L~lsl~f~p  181 (551)
                         |.+.++|.+
T Consensus      2090 ~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2090 SRTLEIEFQWSN 2101 (2102)
T ss_pred             cceEEEEEEecC
Confidence               999999865

>PHA03003 palmytilated EEV membrane glycoprotein; Provisional

Probab=99.43  E-value=1.1e-12  Score=139.51  Aligned_cols=148  Identities=20%  Similarity=0.227  Sum_probs=99.8

Q ss_pred             chHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhh-hcCCeEEEEEeCCCCccCccCCCCC
Q 008859          242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       242 ~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka-~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      .+.+.++++|.+||++|+|+++.|-|..   +.+..   ......|.++|.++| +|||+||||+ +..+....      
T Consensus       216 ~~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~---~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~------  282 (369)
T PHA03003        216 LDADVVLHKIKSAKKSIDLELLSLVPVI---REDDK---TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV------  282 (369)
T ss_pred             cCHHHHHHHHHHHhhEEEEEEeccccEE---eeCCC---CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc------
Confidence            3578999999999999999999764432   22220   111358899998885 9999999997 76533210      


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                       .    .....+.|...|+++.+    +   ..++       .+.+|+|++|||++        +||+||.|+....+..
T Consensus       283 -~----~~~~~~~L~~~G~~~~i----~---vri~-------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~  335 (369)
T PHA03003        283 -Y----SMASVKSLQALCVGNDL----S---VKVF-------RIPNNTKLLIVDDE--------FAHITSANFDGTHYLH  335 (369)
T ss_pred             -h----hhhHHHHHHHcCCCCCc----e---Eeee-------cCCCCceEEEEcCC--------EEEEeccccCchhhcc
Confidence             0    12334556667754210    0   0010       12279999999998        9999999997743431


Q ss_pred             CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhc
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKAT  460 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~  460 (551)
                                                    ..|.++. ..+|++|.++...|++.|+...
T Consensus       336 ------------------------------~~e~~~~-~~~~~~a~~l~~~F~~dW~~~~  364 (369)
T PHA03003        336 ------------------------------HAFVSFN-TIDKELVKELSAIFERDWTSSY  364 (369)
T ss_pred             ------------------------------CCCeEEe-cCChhHHHHHHHHHHHHhCCcc
Confidence                                          1234433 5689999999999999998654

>PRK12452 cardiolipin synthetase; Reviewed

Probab=99.39  E-value=1e-12  Score=144.83  Aligned_cols=150  Identities=16%  Similarity=0.164  Sum_probs=110.8

Q ss_pred             ecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCC
Q 008859          231 PLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKT  310 (551)
Q Consensus       231 ~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~  310 (551)
                      .+.+|+....+.+++.+.++|.+||++|||+++.      ++  |+        ..+.++|+.+|++||+|+||+ +..+
T Consensus       333 ~~~sgp~~~~~~i~~~~l~~I~~A~~~I~I~tpY------f~--pd--------~~l~~aL~~Aa~rGV~Vrii~-p~~~  395 (509)
T PRK12452        333 IVASGPSSDDKSIRNTLLAVMGSAKKSIWIATPY------FI--PD--------QETLTLLRLSAISGIDVRILY-PGKS  395 (509)
T ss_pred             EEeCCCCchhHHHHHHHHHHHHHhhhEEEEECCc------cC--CC--------HHHHHHHHHHHHcCCEEEEEc-CCCC
Confidence            3445555544689999999999999999999863      34  22        588999999999999999997 6543


Q ss_pred             ccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEce
Q 008859          311 SHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGG  390 (551)
Q Consensus       311 s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG  390 (551)
                      ....        .........+.+..+||++....  +               ...|+|++|||++        +|++|+
T Consensus       396 D~~~--------~~~a~~~~~~~L~~aGv~I~~y~--~---------------~~lHaK~~ivD~~--------~a~vGS  442 (509)
T PRK12452        396 DSII--------SDQASQSYFTPLLKAGASIYSYK--D---------------GFMHAKIVLVDDK--------IATIGT  442 (509)
T ss_pred             ChHH--------HHHHHHHHHHHHHHcCCEEEEec--C---------------CCeeeeEEEECCC--------EEEEeC
Confidence            2210        00001233455667899987421  1               1249999999998        999999


Q ss_pred             eeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcC
Q 008859          391 IDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK  461 (551)
Q Consensus       391 ~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~  461 (551)
                      .|+...-+                               +..|.+.++..+++.|.++...|++.|+.+..
T Consensus       443 ~Nld~RS~-------------------------------~~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~~  482 (509)
T PRK12452        443 ANMDVRSF-------------------------------ELNYEIISVLYESETVHDIKRDFEDDFKHSTE  482 (509)
T ss_pred             cccCHhHh-------------------------------hhhhhccEEEECHHHHHHHHHHHHHHHHhCeE
Confidence            99976222                               13567999999999999999999999987643

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.38  E-value=2.8e-12  Score=112.53  Aligned_cols=69  Identities=33%  Similarity=0.560  Sum_probs=59.9

Q ss_pred             CCcEEEEEECCe-----eeEEeeecCCCCCCeEeeEEEEeecCC-----CCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859           80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (551)
Q Consensus        80 sDpYvtV~l~~~-----~v~rTrvi~ns~nP~WnE~F~i~vah~-----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~  148 (551)
                      +||||+|++.+.     .++||++++++.||+|| .|.|++...     ...|.|+|||.+.++ +++||++.++++++.
T Consensus        21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence            899999998542     46899999999999999 799886432     467999999999998 899999999999998


Q ss_pred             c
Q 008859          149 T  149 (551)
Q Consensus       149 ~  149 (551)
                      .
T Consensus       100 ~  100 (110)
T cd04047         100 K  100 (110)
T ss_pred             c
Confidence            4

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.35  E-value=2.9e-12  Score=105.43  Aligned_cols=81  Identities=44%  Similarity=0.762  Sum_probs=69.6

Q ss_pred             EEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe--eeEEe
Q 008859           19 LDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA--TVART   96 (551)
Q Consensus        19 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~--~v~rT   96 (551)
                      |.|+|++|++|+..+..+.                                          .||||++.+.+.  ...+|
T Consensus         1 L~v~I~~a~~L~~~~~~~~------------------------------------------~~~yv~v~~~~~~~~~~~T   38 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGK------------------------------------------PDPYVRVSVNGSESTKYKT   38 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSS------------------------------------------BEEEEEEEEETTTCEEEEE
T ss_pred             CEEEEEEEECCCCcccCCc------------------------------------------ccccceeecceeeeeeeee
Confidence            7899999999997664332                                          789999999874  33899


Q ss_pred             eecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEE
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAA  141 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~  141 (551)
                      ++++++.+|.|+|.|.|++..+ ...|.|+|||.+.++ +++||.++
T Consensus        39 ~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   39 KVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             CCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred             eeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence            9999999999999999995544 556999999999999 89999985

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.35  E-value=1.8e-12  Score=141.14  Aligned_cols=126  Identities=26%  Similarity=0.392  Sum_probs=110.0

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      ..|.|+|.||+|||..+..+                                          ++||||+|.+++..+.||
T Consensus         5 ~sl~vki~E~knL~~~~~~g------------------------------------------~~D~yC~v~lD~E~v~RT   42 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSG------------------------------------------MRDCYCTVNLDQEEVCRT   42 (800)
T ss_pred             cceeEEEeecccCCCCCCCC------------------------------------------CcCcceEEeecchhhhhh
Confidence            46899999999999876543                                          289999999999999999


Q ss_pred             eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEE
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~l  175 (551)
                      .++..+..|.|.|.|.|.+......|.|.|||.| ++ |+.||.+.|.=++|..-...+.||.|. +-....+..|+++|
T Consensus        43 ~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~-~VD~dsEVQG~v~l  120 (800)
T KOG2059|consen   43 ATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQ-PVDPDSEVQGKVHL  120 (800)
T ss_pred             hhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceecc-ccCCChhhceeEEE
Confidence            9999999999999999999999999999999999 66 999999999999998777889999983 22223457899999


Q ss_pred             EeeeeccCCCC
Q 008859          176 ELKFTPCDKNP  186 (551)
Q Consensus       176 sl~f~p~~~~~  186 (551)
                      ++++.+.....
T Consensus       121 ~l~~~e~~~~~  131 (800)
T KOG2059|consen  121 ELALTEAIQSS  131 (800)
T ss_pred             EEEeccccCCC
Confidence            99999887654

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.34  E-value=4.3e-13  Score=139.03  Aligned_cols=104  Identities=27%  Similarity=0.459  Sum_probs=91.7

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~   92 (551)
                      ..|.|+|.+|+||-+||..+.                                          |||||.+.+-.    ..
T Consensus       180 ~~l~v~i~ea~NLiPMDpNGl------------------------------------------SDPYvk~kliPD~~~~s  217 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDPNGL------------------------------------------SDPYVKLKLIPDPKNES  217 (683)
T ss_pred             ceEEEEehhhccccccCCCCC------------------------------------------CCcceeEEeccCCcchh
Confidence            469999999999999997664                                          99999999943    45


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC--CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~--~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~  163 (551)
                      ..+|++|+.+.||+|||+|.|.+...  ...|.++|||.|..+ .+++|...+.+++|. .+.+++||.||...
T Consensus       218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsqe  290 (683)
T KOG0696|consen  218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQE  290 (683)
T ss_pred             hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhhh
Confidence            67999999999999999999999887  456999999999998 899999999999998 56789999998653

>PRK13912 nuclease NucT; Provisional

Probab=99.31  E-value=5.4e-11  Score=113.87  Aligned_cols=141  Identities=16%  Similarity=0.235  Sum_probs=97.5

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      .++++.+.++|++|+++|+|+.|.+.                 ...+.+.|.++++|||+|+||+ |...+...      
T Consensus        32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~-----------------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------   87 (177)
T PRK13912         32 KDALNKLVSLISNARSSIKIAIYSFT-----------------HKDIAKALKSAAKRGVKISIIY-DYESNHNN------   87 (177)
T ss_pred             HHHHHHHHHHHHhcccEEEEEEEEEc-----------------hHHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence            35688999999999999999988541                 2479999999999999999997 87654320      


Q ss_pred             CcccCCcHHHHhHhc-CCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccC
Q 008859          321 GVMATHDEETKKFFK-HSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD  399 (551)
Q Consensus       321 g~~~t~~~~~~~~~~-~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~D  399 (551)
                            +..+..++. ..++++....  +.. ...     ......+|+|++|||++        ++|+|+.|++...+.
T Consensus        88 ------~~~~~~~l~~~~~~~~~~~~--~~~-~~~-----~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~  145 (177)
T PRK13912         88 ------DQSTIGYLDKYPNIKVCLLK--GLK-AKN-----GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE  145 (177)
T ss_pred             ------chhHHHHHHhCCCceEEEec--Ccc-ccC-----cccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence                  112222332 3466655321  110 000     01123579999999998        999999999984433


Q ss_pred             CCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHhh
Q 008859          400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKA  459 (551)
Q Consensus       400 t~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~~  459 (551)
                      .                                =+++.+.++.| .+.++.+.|.+.|...
T Consensus       146 ~--------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s  174 (177)
T PRK13912        146 N--------------------------------NYEVLLITDDTETILKAKEYFQKMLGSC  174 (177)
T ss_pred             c--------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence            1                                03456677777 5688999999999764

>cd00030 C2 C2 domain

Probab=99.29  E-value=2.2e-11  Score=101.58  Aligned_cols=80  Identities=34%  Similarity=0.646  Sum_probs=71.9

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecC-CCCeEEEEEEecCCCC-CceeEEEEeeccccc-ccceeeeE
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRW  156 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah-~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~-~g~~i~~w  156 (551)
                      .+|||++.+.+...+||+++.++.||.|+|.|.|++.. ....+.|+|++.+..+ ..+||.+.+++.++. .......|
T Consensus        20 ~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~   99 (102)
T cd00030          20 SDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW   99 (102)
T ss_pred             CCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcce
Confidence            79999999988566899999999999999999999988 6678999999999887 899999999999998 67777888


Q ss_pred             EEc
Q 008859          157 YDI  159 (551)
Q Consensus       157 ~~L  159 (551)
                      ++|
T Consensus       100 ~~l  102 (102)
T cd00030         100 LPL  102 (102)
T ss_pred             ecC
Confidence            875

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.27  E-value=3.3e-11  Score=101.21  Aligned_cols=74  Identities=42%  Similarity=0.734  Sum_probs=66.5

Q ss_pred             CCcEEEEEECCe--eeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859           80 SDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (551)
Q Consensus        80 sDpYvtV~l~~~--~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i  153 (551)
                      .+|||++.+...  ..+||+++.++.||.|||.|.|++... ...|.|+|++.+..+ +.+||.+.+++.++..+...
T Consensus        21 ~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~   98 (101)
T smart00239       21 SDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRH   98 (101)
T ss_pred             CCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCccc
Confidence            799999999876  578999999999999999999999998 778999999999887 89999999999998866543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02223 phosphoinositide phospholipase C

Probab=99.15  E-value=3.5e-10  Score=123.01  Aligned_cols=96  Identities=23%  Similarity=0.421  Sum_probs=81.3

Q ss_pred             CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCCC-eEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (551)
Q Consensus        80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~~-~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i  153 (551)
                      .||||+|.+.+    ....||.|..|+.||+|||+|.|++..+.. -|.|+|+|.|..+ +++||++.||+..|..|-  
T Consensus       435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy--  512 (537)
T PLN02223        435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI--  512 (537)
T ss_pred             CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc--
Confidence            79999999965    234588888889999999999999877754 4799999999876 899999999999999884  


Q ss_pred             eeEEEccCCCCCCCCCCceEEEEeee
Q 008859          154 SRWYDIIAPSGSPPKPGASIQLELKF  179 (551)
Q Consensus       154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f  179 (551)
                       ++++|++..|++.. ..+|.+.+.|
T Consensus       513 -R~VpL~~~~g~~l~-~~~Ll~~f~~  536 (537)
T PLN02223        513 -RAVPLYDERGKACS-STMLLTRFKW  536 (537)
T ss_pred             -eeEeccCCCcCCCC-CceEEEEEEe
Confidence             77899999999874 4677777765

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=9.8e-11  Score=126.23  Aligned_cols=113  Identities=32%  Similarity=0.536  Sum_probs=93.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      +|.|.|.|++|++|+.|+..+.                                          +||||++.+-.    .
T Consensus       297 ~g~ltv~v~kar~L~~~~~~~~------------------------------------------~d~~Vk~~l~~~~~~~  334 (421)
T KOG1028|consen  297 AGRLTVVVIKARNLKSMDVGGL------------------------------------------SDPYVKVTLLDGDKRL  334 (421)
T ss_pred             CCeEEEEEEEecCCCcccCCCC------------------------------------------CCccEEEEEecCCcee
Confidence            5999999999999998886543                                          89999999832    4


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                      ...+|.+.+++.||+|||+|.|.|...   ...|+|+|+|.|.+| .++||.+.+....  +|.....|..++...++|.
T Consensus       335 ~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv  412 (421)
T KOG1028|consen  335 SKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV  412 (421)
T ss_pred             eeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence            557999999999999999999988754   346899999999999 7899988887665  6667888999988877776


Q ss_pred             CCCce
Q 008859          168 KPGAS  172 (551)
Q Consensus       168 k~~G~  172 (551)
                      .....
T Consensus       413 ~~wh~  417 (421)
T KOG1028|consen  413 AQWHS  417 (421)
T ss_pred             eeeEe
Confidence            54443

>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A

Probab=99.09  E-value=8.6e-10  Score=98.37  Aligned_cols=124  Identities=21%  Similarity=0.388  Sum_probs=84.0

Q ss_pred             HHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCccc-C
Q 008859          247 ICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMA-T  325 (551)
Q Consensus       247 l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~~-t  325 (551)
                      |.++|.+|+++|+|+.+.+      .           ...+.+.|..++++||+|+|++ +......       +.+. .
T Consensus         1 l~~~i~~A~~~i~i~~~~~------~-----------~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~   55 (126)
T PF13091_consen    1 LIDLIKSAQKSIWIASPYI------T-----------DPDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLA   55 (126)
T ss_dssp             HHHHHHT-SSEEEEEESSS------------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHH
T ss_pred             CHHHHhccCCEEEEEEEec------C-----------cHHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhH
Confidence            5789999999999999853      1           2477888888999999999998 4422100       0000 0


Q ss_pred             CcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccc
Q 008859          326 HDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRL  405 (551)
Q Consensus       326 ~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l  405 (551)
                      ......+.++..|+++.                     .+.|.|++|||++        ++++|+.|++...|.      
T Consensus        56 ~~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~------  100 (126)
T PF13091_consen   56 SLKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR------  100 (126)
T ss_dssp             HHHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC------
T ss_pred             HHHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc------
Confidence            11233344466777754                     1449999999987        999999999985441      


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHH-HHHHHHHHHHHH
Q 008859          406 FRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRW  456 (551)
Q Consensus       406 ~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPa-a~dv~~~F~~rW  456 (551)
                                                -.+++.+.+++|. +..+.+.|.+.|
T Consensus       101 --------------------------~n~E~~~~~~~~~~~~~~~~~F~~~W  126 (126)
T PF13091_consen  101 --------------------------RNYELGVIIDDPELVKELIREFDQMW  126 (126)
T ss_dssp             --------------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred             --------------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence                                      2369999999996 999999999889

...

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.09  E-value=4.6e-10  Score=128.63  Aligned_cols=132  Identities=26%  Similarity=0.434  Sum_probs=105.4

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|.+|++|...+.+-.                                        ++.|||+++...+...|||
T Consensus       436 GVv~vkI~sa~~lk~~d~~i~----------------------------------------~~vDpyit~~~~~r~~gkT  475 (1227)
T COG5038         436 GVVEVKIKSAEGLKKSDSTIN----------------------------------------GTVDPYITVTFSDRVIGKT  475 (1227)
T ss_pred             EEEEEEEeeccCccccccccc----------------------------------------CCCCceEEEEeccccCCcc
Confidence            889999999999986552211                                        1389999999999888999


Q ss_pred             eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeee-EEEccCCCCCCCCCCceEE
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISR-WYDIIAPSGSPPKPGASIQ  174 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~-w~~Ll~~~gkp~k~~G~L~  174 (551)
                      ++.+|+.||+|||+|.+.+..-...|.++|||.+.+. +.++|++.|++..+........ -+.++ .+.+   ..|+|.
T Consensus       476 ~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k---~vGrL~  551 (1227)
T COG5038         476 RVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTK---NVGRLT  551 (1227)
T ss_pred             ceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCc---cceEEE
Confidence            9999999999999999999988889999999966655 9999999999988875433332 44442 3333   459999


Q ss_pred             EEeeeeccCCCCceeccc
Q 008859          175 LELKFTPCDKNPLYRQGI  192 (551)
Q Consensus       175 lsl~f~p~~~~~~~~~gi  192 (551)
                      ..++|+|...+..-..|.
T Consensus       552 yDl~ffp~~e~k~~~~~s  569 (1227)
T COG5038         552 YDLRFFPVIEDKKELKGS  569 (1227)
T ss_pred             EeeeeecccCCccccccc
Confidence            999999998766544443

>PRK01642 cls cardiolipin synthetase; Reviewed

Probab=99.08  E-value=6.1e-10  Score=122.51  Aligned_cols=150  Identities=19%  Similarity=0.148  Sum_probs=105.6

Q ss_pred             eecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCC
Q 008859          230 IPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK  309 (551)
Q Consensus       230 ~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~  309 (551)
                      ..+.+|+.+..+.+.+.+.++|.+||++|+|++.      |++  |        +..+.++|+.+|++||+|+|++ +..
T Consensus       306 qi~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~tp------Yfi--p--------~~~i~~aL~~Aa~rGV~Vril~-p~~  368 (483)
T PRK01642        306 QVIASGPGDPEETIHQFLLTAIYSARERLWITTP------YFV--P--------DEDLLAALKTAALRGVDVRIII-PSK  368 (483)
T ss_pred             EEEeCCCCChhhHHHHHHHHHHHHhccEEEEEcC------CcC--C--------CHHHHHHHHHHHHcCCEEEEEe-CCC
Confidence            3445566655567888899999999999999985      234  2        2589999999999999999998 654


Q ss_pred             CccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEc
Q 008859          310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIG  389 (551)
Q Consensus       310 ~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvG  389 (551)
                      .....        .........+.+...||++...   ..              .-.|.|++|||++        ++++|
T Consensus       369 ~d~~~--------~~~~~~~~~~~L~~~Gv~I~~y---~~--------------~~~HaK~~ivD~~--------~~~vG  415 (483)
T PRK01642        369 NDSLL--------VFWASRAFFTELLEAGVKIYRY---EG--------------GLLHTKSVLVDDE--------LALVG  415 (483)
T ss_pred             CCcHH--------HHHHHHHHHHHHHHcCCEEEEe---CC--------------CceEeEEEEECCC--------EEEee
Confidence            32210        0000122234455789998742   11              1249999999998        99999


Q ss_pred             eeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHhhcC
Q 008859          390 GIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK  461 (551)
Q Consensus       390 G~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~~~~  461 (551)
                      +.|+...-+..               +                 +.+.+.+.+| .+.++.+.|++.|..+..
T Consensus       416 S~N~d~rS~~~---------------N-----------------~E~~~~i~d~~~~~~l~~~f~~d~~~s~~  456 (483)
T PRK01642        416 TVNLDMRSFWL---------------N-----------------FEITLVIDDTGFAADLAAMQEDYFARSRE  456 (483)
T ss_pred             CCcCCHhHHhh---------------h-----------------hcceEEEECHHHHHHHHHHHHHHHHhCeE
Confidence            99996522210               1                 3677888888 589999999999987543

>PLN02952 phosphoinositide phospholipase C

Probab=99.06  E-value=1.4e-09  Score=120.64  Aligned_cols=96  Identities=23%  Similarity=0.455  Sum_probs=80.3

Q ss_pred             CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (551)
Q Consensus        80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i  153 (551)
                      .||||+|.+.+    ....||+++.|+.||+|||+|.|++..+. .-|.|+|+|.|..+ +++||++.||+..|..|-  
T Consensus       497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy--  574 (599)
T PLN02952        497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI--  574 (599)
T ss_pred             CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--
Confidence            59999999965    34459999999999999999999977764 45799999999887 899999999999999885  


Q ss_pred             eeEEEccCCCCCCCCCCceEEEEeee
Q 008859          154 SRWYDIIAPSGSPPKPGASIQLELKF  179 (551)
Q Consensus       154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f  179 (551)
                       +|++|.+..|++.. ...|.+.+.|
T Consensus       575 -R~VpL~~~~G~~l~-~a~Llv~f~~  598 (599)
T PLN02952        575 -RSVPLHDKKGEKLK-NVRLLMRFIF  598 (599)
T ss_pred             -eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence             59999999998763 4556666554

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=2.8e-10  Score=122.55  Aligned_cols=119  Identities=26%  Similarity=0.514  Sum_probs=95.9

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~   94 (551)
                      +...+.++|+.|.+|...|-.++                                          |||||++.++..+ .
T Consensus       293 wsakitltvlcaqgl~akdktg~------------------------------------------sdpyvt~qv~ktk-r  329 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGK------------------------------------------SDPYVTAQVGKTK-R  329 (1283)
T ss_pred             cceeeEEeeeecccceecccCCC------------------------------------------CCCcEEEeecccc-h
Confidence            34568899999999987665443                                          9999999998866 5


Q ss_pred             EeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCC------------CCceeEEEEeecccccccceeeeEEEccCC
Q 008859           95 RTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF------------GAQIIGTAAIPAHTIATGELISRWYDIIAP  162 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~------------g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~  162 (551)
                      |||+|....||+|||.|+|.|.+....+.+.|||.|.-            +++|+|+..|.+..+. | +.+-||.|-..
T Consensus       330 rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynlekr  407 (1283)
T KOG1011|consen  330 RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLEKR  407 (1283)
T ss_pred             hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchhhc
Confidence            99999999999999999999999888999999998632            4899999999998774 4 57789999544


Q ss_pred             CCCCCCCCceEEEEeee
Q 008859          163 SGSPPKPGASIQLELKF  179 (551)
Q Consensus       163 ~gkp~k~~G~L~lsl~f  179 (551)
                      ..|. ...|.|++.+..
T Consensus       408 tdks-avsgairlhisv  423 (1283)
T KOG1011|consen  408 TDKS-AVSGAIRLHISV  423 (1283)
T ss_pred             cchh-hccceEEEEEEE
Confidence            4443 356777666654

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.03  E-value=6.2e-10  Score=118.72  Aligned_cols=170  Identities=25%  Similarity=0.428  Sum_probs=123.5

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~   94 (551)
                      +.|.|-|+|..||+||-||..+.                                         +.|.||.|.+...+ .
T Consensus         1 mpgkl~vki~a~r~lpvmdkasd-----------------------------------------~tdafveik~~n~t-~   38 (1169)
T KOG1031|consen    1 MPGKLGVKIKAARHLPVMDKASD-----------------------------------------LTDAFVEIKFANTT-F   38 (1169)
T ss_pred             CCCcceeEEEeccCCcccccccc-----------------------------------------cchheeEEEecccc-e
Confidence            36889999999999999997664                                         37999999999977 6


Q ss_pred             EeeecCCCCCCeEe-eEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccc----------ccceeeeEEEc
Q 008859           95 RTRVLKNSQEPVWN-EHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA----------TGELISRWYDI  159 (551)
Q Consensus        95 rTrvi~ns~nP~Wn-E~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~----------~g~~i~~w~~L  159 (551)
                      +|-|..++.||.|| +-|.|.|...   ...|.+++.|.|..+ .+-||.|.|.++.+.          .|..+++|||+
T Consensus        39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pi  118 (1169)
T KOG1031|consen   39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPI  118 (1169)
T ss_pred             ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeec
Confidence            99999999999999 7799988764   567999999999998 799999999998775          24568999999


Q ss_pred             cCCCCCCCCCCceEEEEeeeeccCCCCceeccccCCCCCCCCCCCCCCcccCCeeEEEEeccccCCCCCceecCCCCCCC
Q 008859          160 IAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK  239 (551)
Q Consensus       160 l~~~gkp~k~~G~L~lsl~f~p~~~~~~~~~gi~~~~~~~gvp~s~~p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~  239 (551)
                      .+.-..   ..|+|.|-++.--......|.+.      ..||.+.....     +-+-..+.+..||+.+.++.+.+.|+
T Consensus       119 fdtihg---irgeinvivkvdlfndlnkf~qs------scgvkffctts-----ip~~yra~iihgfveelvvnddpeyq  184 (1169)
T KOG1031|consen  119 FDTIHG---IRGEINVIVKVDLFNDLNKFPQS------SCGVKFFCTTS-----IPFCYRAQIIHGFVEELVVNDDPEYQ  184 (1169)
T ss_pred             ceeccc---ccceeEEEEEEeehhhhhhcccc------cccceeeeccc-----CccceeehhhhhhhHHhccCCCcchh
Confidence            876432   46888888764332222222221      12222211111     11112345566888888888888886


Q ss_pred             C
Q 008859          240 P  240 (551)
Q Consensus       240 ~  240 (551)
                      +
T Consensus       185 w  185 (1169)
T KOG1031|consen  185 W  185 (1169)
T ss_pred             h
Confidence            3

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.00  E-value=2.2e-09  Score=118.88  Aligned_cols=96  Identities=22%  Similarity=0.449  Sum_probs=81.2

Q ss_pred             CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (551)
Q Consensus        80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i  153 (551)
                      .||||+|.+-+    ....||+|..|+.||+|||+|.|++..+. +-|.|.|+|.|..+ +++||+..||+..|..|-  
T Consensus       496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy--  573 (598)
T PLN02230        496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI--  573 (598)
T ss_pred             CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc--
Confidence            69999999954    23469999989999999999999987774 56799999999876 899999999999999884  


Q ss_pred             eeEEEccCCCCCCCCCCceEEEEeee
Q 008859          154 SRWYDIIAPSGSPPKPGASIQLELKF  179 (551)
Q Consensus       154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f  179 (551)
                       +.++|++..|.+.. ...|.+.+.|
T Consensus       574 -R~V~L~~~~G~~l~-~~~Ll~~f~~  597 (598)
T PLN02230        574 -HAVPLFNRKGVKYS-STRLLMRFEF  597 (598)
T ss_pred             -ceEeccCCCcCCCC-CCeeEEEEEe
Confidence             56899999999874 4678877766

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.96  E-value=2.3e-09  Score=92.84  Aligned_cols=65  Identities=29%  Similarity=0.409  Sum_probs=57.5

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccc
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA  148 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~  148 (551)
                      +||||+|.+++...+||++   +.||.|||.|.|++. ...+++|+|||...-..--||..-|++++|.
T Consensus        23 ~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~   87 (109)
T cd08689          23 PETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA   87 (109)
T ss_pred             CCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence            7999999999988899988   699999999999995 5778999999986544678999999998887

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.96  E-value=5.9e-09  Score=115.34  Aligned_cols=96  Identities=23%  Similarity=0.476  Sum_probs=81.2

Q ss_pred             CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeeccccccccee
Q 008859           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI  153 (551)
Q Consensus        80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i  153 (551)
                      .||||+|.+.+    ....||+++.|+.||+|||+|.|.+..+. +-|.|+|+|.|..+ +++||+..||+..|..|-  
T Consensus       479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy--  556 (581)
T PLN02222        479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI--  556 (581)
T ss_pred             CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence            69999999964    33469999999999999999999987764 55799999998876 899999999999999884  


Q ss_pred             eeEEEccCCCCCCCCCCceEEEEeee
Q 008859          154 SRWYDIIAPSGSPPKPGASIQLELKF  179 (551)
Q Consensus       154 ~~w~~Ll~~~gkp~k~~G~L~lsl~f  179 (551)
                       +.++|.+..|.+.. ...|.+.+.|
T Consensus       557 -R~V~L~~~~g~~l~-~a~Lfv~~~~  580 (581)
T PLN02222        557 -RAFPLHSRKGEKYK-SVKLLVKVEF  580 (581)
T ss_pred             -ceEEccCCCcCCCC-CeeEEEEEEe
Confidence             57899999999874 4678777765

>PLN02228 Phosphoinositide phospholipase C

Probab=98.94  E-value=7e-09  Score=114.42  Aligned_cols=99  Identities=21%  Similarity=0.342  Sum_probs=83.5

Q ss_pred             CCcEEEEEECC----eeeEEeeecCCCCCCeE-eeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccce
Q 008859           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVW-NEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL  152 (551)
Q Consensus        80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~W-nE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~  152 (551)
                      .||||+|.+.+    ....||++++|+.||+| ||+|.|++..+. +-|.|+|+|.|..+ +++||++.||++.|..|- 
T Consensus       458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY-  536 (567)
T PLN02228        458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV-  536 (567)
T ss_pred             CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence            79999999954    23469999999999999 999999987764 56799999998776 899999999999999883 


Q ss_pred             eeeEEEccCCCCCCCCCCceEEEEeeeecc
Q 008859          153 ISRWYDIIAPSGSPPKPGASIQLELKFTPC  182 (551)
Q Consensus       153 i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~  182 (551)
                        +.++|++..|++.. .+.|.+.+.+.+.
T Consensus       537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~  563 (567)
T PLN02228        537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP  563 (567)
T ss_pred             --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence              56899999999874 5789988887654

>PRK11263 cardiolipin synthase 2; Provisional

Probab=98.93  E-value=5.5e-09  Score=112.53  Aligned_cols=135  Identities=16%  Similarity=0.134  Sum_probs=95.1

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      ..+.+.+.++|.+|+++|+|++.      |++  |        +..|.+.|..+|+|||+|+||+ +..++...      
T Consensus       205 ~~i~~~~~~~i~~A~~~I~I~tp------Yf~--p--------~~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~------  261 (411)
T PRK11263        205 DDIERHYLKALRQARREVIIANA------YFF--P--------GYRLLRALRNAARRGVRVRLIL-QGEPDMPI------  261 (411)
T ss_pred             HHHHHHHHHHHHHhceEEEEEec------CcC--C--------CHHHHHHHHHHHHCCCEEEEEe-CCCCCcHH------
Confidence            46778899999999999999974      233  2        2689999999999999999998 65533210      


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                        +..-.+.....+..+||++..   +..              ..-|.|++|||++        +++||+.||.. |...
T Consensus       262 --~~~a~~~~~~~Ll~~Gv~I~~---y~~--------------~~lHaK~~viD~~--------~~~vGS~Nld~-rS~~  313 (411)
T PRK11263        262 --VRVGARLLYNYLLKGGVQIYE---YCR--------------RPLHGKVALMDDH--------WATVGSSNLDP-LSLS  313 (411)
T ss_pred             --HHHHHHHHHHHHHHCCCEEEE---ecC--------------CCceeEEEEECCC--------EEEEeCCcCCH-HHhh
Confidence              000112334556678999763   111              1249999999998        99999999966 3221


Q ss_pred             CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHH-HHHHHHHHHHHHH
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWR  457 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPa-a~dv~~~F~~rW~  457 (551)
                      .              +                 ..+.+.|.+|. +..+...|++.+.
T Consensus       314 l--------------N-----------------~E~~~~i~d~~~a~~l~~~~~~~~~  340 (411)
T PRK11263        314 L--------------N-----------------LEANLIIRDRAFNQTLRDNLNGLIA  340 (411)
T ss_pred             h--------------h-----------------hhcCEEEeCHHHHHHHHHHHHHHHH
Confidence            0              1                 25566777774 5788888999886

>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs)

Probab=98.92  E-value=3.5e-10  Score=74.85  Aligned_cols=27  Identities=59%  Similarity=1.015  Sum_probs=18.9

Q ss_pred             cccCccceEEEccCCCCCCcceEEEEceeeccccc
Q 008859          363 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR  397 (551)
Q Consensus       363 ~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R  397 (551)
                      .++||||++|||++        +||+||+|||++|
T Consensus         2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~   28 (28)
T PF00614_consen    2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR   28 (28)
T ss_dssp             TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred             CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence            46899999999998        9999999999865

PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.90  E-value=6.4e-09  Score=115.47  Aligned_cols=98  Identities=27%  Similarity=0.516  Sum_probs=83.0

Q ss_pred             CCcEEEEEECC----eeeEEeeec-CCCCCCeEeeEEEEeecCCCC-eEEEEEEecCCCC-CceeEEEEeecccccccce
Q 008859           80 SDPYVTVVVPQ----ATVARTRVL-KNSQEPVWNEHFNIPLAHPLS-NLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL  152 (551)
Q Consensus        80 sDpYvtV~l~~----~~v~rTrvi-~ns~nP~WnE~F~i~vah~~~-~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~  152 (551)
                      +||||.|.+.+    ....+|+++ .|+-||.|+|+|.|++.-|.- -|.|.|.|.|..+ ++|+|+..||++.|..|- 
T Consensus       641 ~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy-  719 (746)
T KOG0169|consen  641 SDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY-  719 (746)
T ss_pred             CCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce-
Confidence            79999999966    445799955 559999999999999998854 4799999999999 999999999999999883 


Q ss_pred             eeeEEEccCCCCCCCCCCceEEEEeeeec
Q 008859          153 ISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (551)
Q Consensus       153 i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p  181 (551)
                        +-+||++..|+.. ....|.|.+.+.+
T Consensus       720 --RhVpL~~~~G~~~-~~asLfv~i~~~~  745 (746)
T KOG0169|consen  720 --RHVPLLSREGEAL-SSASLFVRIAIVE  745 (746)
T ss_pred             --eeeeecCCCCccc-cceeEEEEEEEec
Confidence              4578989889876 4678888888754

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.90  E-value=8e-09  Score=94.18  Aligned_cols=72  Identities=24%  Similarity=0.300  Sum_probs=62.9

Q ss_pred             CCcEEEEEECC--eeeEEeeecCCCCC--CeEeeEEEEeecCC------------------------CCeEEEEEEecCC
Q 008859           80 SDPYVTVVVPQ--ATVARTRVLKNSQE--PVWNEHFNIPLAHP------------------------LSNLEIQVKDDDV  131 (551)
Q Consensus        80 sDpYvtV~l~~--~~v~rTrvi~ns~n--P~WnE~F~i~vah~------------------------~~~l~f~Vkd~d~  131 (551)
                      +||||++.+.+  ....+|.|..++.|  |.||++|.|++..+                        ...|.++|||.|.
T Consensus        25 sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~  104 (133)
T cd08374          25 SDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDK  104 (133)
T ss_pred             cCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcc
Confidence            89999999976  46689999999988  99999999987762                        2468999999999


Q ss_pred             CC-CceeEEEEeecccccccc
Q 008859          132 FG-AQIIGTAAIPAHTIATGE  151 (551)
Q Consensus       132 ~g-~~lIG~v~Ipl~~l~~g~  151 (551)
                      ++ +++||.+.+++..+..+.
T Consensus       105 ~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374         105 FSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cCCCCcceEEEEEhhhccccc
Confidence            98 899999999999887654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.82  E-value=9.3e-09  Score=118.15  Aligned_cols=123  Identities=25%  Similarity=0.393  Sum_probs=98.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r   95 (551)
                      -|.|+|.+..|.||++-|..+.                                          +||||.+.+.+..+.+
T Consensus      1039 sG~l~I~~~~~~nl~~~d~ng~------------------------------------------sDpfv~~~ln~k~vyk 1076 (1227)
T COG5038        1039 SGYLTIMLRSGENLPSSDENGY------------------------------------------SDPFVKLFLNEKSVYK 1076 (1227)
T ss_pred             cCcEEEEEeccCCCcccccCCC------------------------------------------CCceEEEEecceeccc
Confidence            5889999999999988776553                                          8999999999998999


Q ss_pred             eeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceE
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI  173 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L  173 (551)
                      |.+++.+.||+|||+|.+++..-. ..+++.|+|.|.-+ +++||.+.|+++.+..+..-..-.++ +... -....|.+
T Consensus      1077 tkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~~g~~ 1154 (1227)
T COG5038        1077 TKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVLDGTL 1154 (1227)
T ss_pred             ccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEecccEe
Confidence            999999999999999999988654 45899999999887 89999999999999877555444444 3322 23456666


Q ss_pred             EEEeeeecc
Q 008859          174 QLELKFTPC  182 (551)
Q Consensus       174 ~lsl~f~p~  182 (551)
                      +....|.+.
T Consensus      1155 ~~~~~~r~~ 1163 (1227)
T COG5038        1155 HPGFNFRSK 1163 (1227)
T ss_pred             ecceecchh
Confidence            666665554

>PHA02820 phospholipase-D-like protein; Provisional

Probab=98.80  E-value=3.7e-08  Score=106.52  Aligned_cols=156  Identities=14%  Similarity=0.122  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHH-hhhcCCeEEEEEeCCCCccCccCCCCCCc
Q 008859          244 WEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKY-KSEEGVRVLLLVWDDKTSHDKLGVKTPGV  322 (551)
Q Consensus       244 ~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~-ka~~GV~V~iLvwD~~~s~~~~~~~~~g~  322 (551)
                      .+.+..+|.+||++|||++-.|-|.++...++.+     -...+.++|.+ +++|||+||||+ -......       ..
T Consensus       220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~-----yw~~i~~AL~~AA~~RGV~VriLv-p~~~d~~-------~~  286 (424)
T PHA02820        220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKIL-----FWPYIEDELRRAAIDRKVSVKLLI-SCWQRSS-------FI  286 (424)
T ss_pred             HHHHHHHHHHHhhEEEEEEccccceeeccCCccc-----chHHHHHHHHHHHHhCCCEEEEEE-eccCCCC-------cc
Confidence            5789999999999999999977776443322221     12588999986 667999999998 3221111       01


Q ss_pred             ccCCcHHHHhHhcCCCcEEE--ecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          323 MATHDEETKKFFKHSSVNCV--LAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       323 ~~t~~~~~~~~~~~~~v~~~--l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                      +. ........|...|+++.  +. .+|.. ..     ......-+|.|++|||+         .|+||..|+....+..
T Consensus       287 ~~-a~~~~l~~L~~~gv~I~Vk~y-~~p~~-~~-----~~~~~~f~HaK~~vvD~---------~a~IGTsN~D~rsf~~  349 (424)
T PHA02820        287 MR-NFLRSIAMLKSKNINIEVKLF-IVPDA-DP-----PIPYSRVNHAKYMVTDK---------TAYIGTSNWTGNYFTD  349 (424)
T ss_pred             HH-HHHHHHHHHhccCceEEEEEE-EcCcc-cc-----cCCcceeeeeeEEEEcc---------cEEEECCcCCHHHHhc
Confidence            10 00112223345677752  11 12210 00     01112346999999995         8999999997644431


Q ss_pred             CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeC----HHHHHHHHHHHHHHHhhcC
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG----PAAYDVLINFEQRWRKATK  461 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~G----Paa~dv~~~F~~rW~~~~~  461 (551)
                                     .                 .-+.+-+..    ..+.+|...|+++|+....
T Consensus       350 ---------------n-----------------~ev~~~i~~~~~~~~~~~l~~~F~~D~~s~y~  382 (424)
T PHA02820        350 ---------------T-----------------CGVSINITPDDGLGLRQQLEDIFIRDWNSKYS  382 (424)
T ss_pred             ---------------c-----------------CcEEEEEecCCcHHHHHHHHHHHHHhcCCCcc
Confidence                           0                 134444433    5899999999999997643

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.53  E-value=3.6e-07  Score=101.32  Aligned_cols=102  Identities=25%  Similarity=0.393  Sum_probs=79.8

Q ss_pred             CCcEEEEEECCe-----eeEEeeecCCCCCCeEe-eEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccc
Q 008859           80 SDPYVTVVVPQA-----TVARTRVLKNSQEPVWN-EHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE  151 (551)
Q Consensus        80 sDpYvtV~l~~~-----~v~rTrvi~ns~nP~Wn-E~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~  151 (551)
                      .-|+|.|.+.++     +..+|.|+.|+.||+|| |.|+|.+..|. .-|.|.|+|.|+|+ ..|||++..|+..|.+|-
T Consensus      1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred             cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc
Confidence            459999999663     44567778899999999 99999988874 56899999999999 589999999999999883


Q ss_pred             eeeeEEEccCCCCCCCCCCceEEEEeeeeccCCC
Q 008859          152 LISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN  185 (551)
Q Consensus       152 ~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~~  185 (551)
                         +-+||-+.-.+.. ....|.|.++..|+...
T Consensus      1165 ---RsVpLkN~ySEdl-ELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1165 ---RSVPLKNGYSEDL-ELASLLVFIEMRPVLES 1194 (1267)
T ss_pred             ---eeeecccCchhhh-hhhhheeeeEeccccCc
Confidence               3467744433333 24678888888777553

>KOG3603 consensus Predicted phospholipase D [General function prediction only]

Probab=98.41  E-value=4.8e-06  Score=87.74  Aligned_cols=169  Identities=17%  Similarity=0.240  Sum_probs=107.4

Q ss_pred             eecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCC
Q 008859          230 IPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK  309 (551)
Q Consensus       230 ~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~  309 (551)
                      -....|+.    .-.++|...|.+|+++|||..-.-.|......+..       -+.|.++|.++|-|||+||+||-.-.
T Consensus       268 ~~~~~grt----~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~~~-------fw~iDdaiR~aa~RgV~vR~lvs~~~  336 (456)
T KOG3603|consen  268 PLNPSGRT----WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKNHR-------FWEIDDAIRRAAVRGVKVRLLVSCWK  336 (456)
T ss_pred             CCCCCCCc----hhHHHHHHHHHHHhhheeeeehhccchheeecCcc-------hhhhhHHHHHHhhcceEEEEEEeccC
Confidence            33445543    35899999999999999998877666655444322       35999999999999999999993222


Q ss_pred             CccCccCCCCCCcccCCcHHHHhHhcCCCcEEEe--cCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEE
Q 008859          310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF  387 (551)
Q Consensus       310 ~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l--~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vaf  387 (551)
                      -+...    ..+.+.. -+...+..++..|+|.+  .|....  .      .+.....+|.|.+|-+.         .||
T Consensus       337 ~~~~~----m~~~L~S-Lq~l~~~~~~~~iqvk~f~VP~~~~--~------~ip~~Rv~HnKymVTe~---------aay  394 (456)
T KOG3603|consen  337 HSEPS----MFRFLRS-LQDLSDPLENGSIQVKFFIVPQTNI--E------KIPFARVNHNKYMVTES---------AAY  394 (456)
T ss_pred             CCCch----HHHHHHH-HHHhcCccccCceEEEEEEeCCCcc--c------cCchhhhccceeEEeec---------cee
Confidence            11110    0000000 00111223455666654  444321  1      23345678999999998         899


Q ss_pred             EceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEE---EeCHHHHHHHHHHHHHHHhhcC
Q 008859          388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR---LDGPAAYDVLINFEQRWRKATK  461 (551)
Q Consensus       388 vGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~---i~GPaa~dv~~~F~~rW~~~~~  461 (551)
                      +|--|.+.++|-.                        ..|.      -+-++   -.|+++.++...|+.+|+...-
T Consensus       395 IGTSNws~dYf~~------------------------TaG~------~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys  441 (456)
T KOG3603|consen  395 IGTSNWSGDYFTS------------------------TAGT------AIVVRQTPHKGTLVSQLKAVFERDWNSTYS  441 (456)
T ss_pred             eeccCCCccceec------------------------cCce------EEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence            9999999876642                        0110      01111   3578999999999999998664

>PRK05443 polyphosphate kinase; Provisional

Probab=98.41  E-value=2.6e-06  Score=96.92  Aligned_cols=141  Identities=17%  Similarity=0.133  Sum_probs=104.0

Q ss_pred             chHHHHHHHHHhccc-----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccC
Q 008859          242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (551)
Q Consensus       242 ~~~~~l~~aI~~A~~-----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~  316 (551)
                      +-|+-+.+.|++|.+     .|.++-|.+.                .+..+.++|..+|++||+|++|| +...-     
T Consensus       348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~----------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~kar-----  405 (691)
T PRK05443        348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTS----------------KDSPIVDALIEAAENGKQVTVLV-ELKAR-----  405 (691)
T ss_pred             cCchHHHHHHHHhccCCCeeEEEEEEEEec----------------CCHHHHHHHHHHHHcCCEEEEEE-ccCcc-----
Confidence            458888999999998     8999999541                24799999999999999999998 54421     


Q ss_pred             CCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecccc
Q 008859          317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (551)
Q Consensus       317 ~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~  396 (551)
                           +....+....+.|+.+||+++.  .++              .+..|.|+++||.+..+ +-+-++++|+.|+...
T Consensus       406 -----fde~~n~~~~~~L~~aGv~V~y--~~~--------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~  463 (691)
T PRK05443        406 -----FDEEANIRWARRLEEAGVHVVY--GVV--------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNYNPK  463 (691)
T ss_pred             -----ccHHHHHHHHHHHHHcCCEEEE--ccC--------------CccceeEEEEEEeecCC-ceeEEEEEcCCCCCcc
Confidence                 1111234456677889999864  111              12459999999986333 3334899999999761


Q ss_pred             ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEE-eCHHHHHHHHHHHHHHHh
Q 008859          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL-DGPAAYDVLINFEQRWRK  458 (551)
Q Consensus       397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i-~GPaa~dv~~~F~~rW~~  458 (551)
                       .                               ...|.|+.+.. .+..+.|+...|..-|..
T Consensus       464 -s-------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~  494 (691)
T PRK05443        464 -T-------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGY  494 (691)
T ss_pred             -h-------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCc
Confidence             1                               13678999984 556899999999999865

>TIGR03705 poly_P_kin polyphosphate kinase 1

Probab=98.30  E-value=6.5e-06  Score=93.31  Aligned_cols=142  Identities=17%  Similarity=0.158  Sum_probs=102.3

Q ss_pred             chHHHHHHHHHhccc-----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccC
Q 008859          242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (551)
Q Consensus       242 ~~~~~l~~aI~~A~~-----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~  316 (551)
                      +-|+.+.+.|++|.+     +|.++-|.+.                .+..+.+.|.++|++|++|+++| +-...+.   
T Consensus       339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~----------------~~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfd---  398 (672)
T TIGR03705       339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTS----------------KDSPIIDALIEAAENGKEVTVVV-ELKARFD---  398 (672)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEEEEec----------------CCcHHHHHHHHHHHcCCEEEEEE-Eehhhcc---
Confidence            457889999999998     8999999542                13699999999999999999998 6332111   


Q ss_pred             CCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecccc
Q 008859          317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (551)
Q Consensus       317 ~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~  396 (551)
                             ...+.+..+.|+.+|++|+.    +-            ..+..|+|+++||.+..+. -+-.+++|.-|... 
T Consensus       399 -------e~~ni~wa~~le~aG~~viy----g~------------~~~k~H~K~~li~r~~~~~-~~~y~~igTgN~n~-  453 (672)
T TIGR03705       399 -------EEANIRWARRLEEAGVHVVY----GV------------VGLKTHAKLALVVRREGGE-LRRYVHLGTGNYHP-  453 (672)
T ss_pred             -------chhhHHHHHHHHHcCCEEEE----cC------------CCeeeeeEEEEEEEeeCCc-eEEEEEecCCCCCC-
Confidence                   11244566788899999884    11            1236699999999763221 22255666555443 


Q ss_pred             ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEE-EeCHHHHHHHHHHHHHHHhh
Q 008859          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCR-LDGPAAYDVLINFEQRWRKA  459 (551)
Q Consensus       397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~-i~GPaa~dv~~~F~~rW~~~  459 (551)
                                                     .....|.|+++. .++..+.|+...|..-|...
T Consensus       454 -------------------------------~ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~  486 (672)
T TIGR03705       454 -------------------------------KTARLYTDLSLFTADPEIGRDVARVFNYLTGYS  486 (672)
T ss_pred             -------------------------------cccccccceeEEEeChHHHHHHHHHHHHhhCCC
Confidence                                           112579999999 88999999999999988743

Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.

>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]

Probab=98.26  E-value=6e-06  Score=89.45  Aligned_cols=137  Identities=20%  Similarity=0.298  Sum_probs=93.9

Q ss_pred             HHHHHHHHhccceEEEEE-EEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCcc
Q 008859          245 EDICHAISEAHHLIYIVG-WSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVM  323 (551)
Q Consensus       245 ~~l~~aI~~A~~~I~I~~-w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~~  323 (551)
                      ..+..+|.+|+++|+|+. |       ++  +        +..+.+.|+.++++||+|+|++ ++.+.....      ..
T Consensus       273 ~~~~~~i~~A~~~i~i~~pY-------f~--~--------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~------~~  328 (438)
T COG1502         273 RLLLKAINSARESILIATPY-------FV--P--------DRELLAALKAAARRGVDVRIII-PSLGANDSA------IV  328 (438)
T ss_pred             HHHHHHHHhhceEEEEEcCC-------cC--C--------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCChH------HH
Confidence            679999999999999999 5       34  2        2678899999999999999998 633211100      00


Q ss_pred             cCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcc
Q 008859          324 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH  403 (551)
Q Consensus       324 ~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H  403 (551)
                      ..-.....+.+...|+++...+.    +            ...|.|++|||++        ++++|+.|+...-+.-   
T Consensus       329 ~~~~~~~~~~l~~~gv~i~~~~~----g------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l---  381 (438)
T COG1502         329 HAAYRAYLKELLEAGVKVYEYPG----G------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL---  381 (438)
T ss_pred             HHHHHHHHHHHHHhCCEEEEecC----C------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH---
Confidence            00011233445578888753221    0            1349999999998        9999999998732211   


Q ss_pred             cccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHhhcC
Q 008859          404 RLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK  461 (551)
Q Consensus       404 ~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~~~~  461 (551)
                                  ++                 .+.+.|+.| .+.++...|+..|..+..
T Consensus       382 ------------N~-----------------E~~~~i~d~~~~~~~~~~~~~~~~~s~~  411 (438)
T COG1502         382 ------------NF-----------------EVGLVIEDPELALKLRREFEADLARSKR  411 (438)
T ss_pred             ------------hh-----------------hheeEEeCHHHHHHHHHHHHHHHHHHhh
Confidence                        11                 455666776 889999999977765443

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.23  E-value=2.2e-06  Score=76.80  Aligned_cols=82  Identities=28%  Similarity=0.511  Sum_probs=66.9

Q ss_pred             cCCCcEEEEEE---CCeeeEEeeecCCCCCCeEeeEEEEeecC----------------CCCeEEEEEEecCCC------
Q 008859           78 ITSDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLAH----------------PLSNLEIQVKDDDVF------  132 (551)
Q Consensus        78 ~tsDpYvtV~l---~~~~v~rTrvi~ns~nP~WnE~F~i~vah----------------~~~~l~f~Vkd~d~~------  132 (551)
                      ++-++||++.+   ++....+||++.++-.|.|+.+|.|+|.-                ...++.|+||..++-      
T Consensus        31 VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~  110 (143)
T cd08683          31 VGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTI  110 (143)
T ss_pred             cccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCcccccee
Confidence            34799999996   44556799999999999999999999872                146789999986533      


Q ss_pred             -----CCceeEEEEeecccccc-cceeeeEEEc
Q 008859          133 -----GAQIIGTAAIPAHTIAT-GELISRWYDI  159 (551)
Q Consensus       133 -----g~~lIG~v~Ipl~~l~~-g~~i~~w~~L  159 (551)
                           +|-++|+|+||+.+|+. ...+.+|||+
T Consensus       111 ~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683         111 KIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                 35689999999999885 4569999986

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.04  E-value=1.5e-06  Score=95.60  Aligned_cols=91  Identities=22%  Similarity=0.406  Sum_probs=77.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-----
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-----   90 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~-----   90 (551)
                      |-+|.|.|+.|+.+-+.|..+-                                          |||||.|.+..     
T Consensus       946 ~q~L~veVlhA~diipLD~NGl------------------------------------------SDPFVviEl~P~~~fp  983 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGL------------------------------------------SDPFVVIELIPKFRFP  983 (1103)
T ss_pred             ccchhhhhhccccccccCCCCC------------------------------------------CCCeEEEEeccccccc
Confidence            4568899999999877776554                                          99999999965     


Q ss_pred             -eeeEEeeecCCCCCCeEeeEEEEeecCC-----CCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859           91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP-----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (551)
Q Consensus        91 -~~v~rTrvi~ns~nP~WnE~F~i~vah~-----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~  148 (551)
                       ..+.||.|.+.+.||+++|.|.|.|...     ..-|.|+|.|+|... .+|-|.+.+.+..+.
T Consensus       984 ~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen  984 AVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             cchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence             4567999999999999999999998775     334899999999998 799999999888775

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.00  E-value=1.7e-06  Score=95.19  Aligned_cols=91  Identities=20%  Similarity=0.440  Sum_probs=70.7

Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCC--------------------------------C-----CC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDV--------------------------------F-----GA  134 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~--------------------------------~-----g~  134 (551)
                      +.-|.|.+.+.||+|+|+|.|.+..-. ..+.+-+||+|-                                -     .+
T Consensus       178 Ikatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD  257 (1103)
T KOG1328|consen  178 IKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD  257 (1103)
T ss_pred             hhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Confidence            345778888999999999999988754 357889998760                                0     16


Q ss_pred             ceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEEEeeeeccCCC
Q 008859          135 QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKN  185 (551)
Q Consensus       135 ~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~~  185 (551)
                      +|+|.+.||+.+|.. ..++.||.|...+.+ .+..|.+++.++....+.+
T Consensus       258 DFLGciNipl~EiP~-~Gld~WFkLepRS~~-S~VqG~~~LklwLsT~e~~  306 (1103)
T KOG1328|consen  258 DFLGCINIPLAEIPP-DGLDQWFKLEPRSDK-SKVQGQVKLKLWLSTKEEG  306 (1103)
T ss_pred             ccccccccchhcCCc-chHHHHhccCccccc-ccccceEEEEEEEeeeccc
Confidence            899999999999974 458899999544444 4678999999988766544

>PRK09428 pssA phosphatidylserine synthase; Provisional

Probab=97.88  E-value=0.00012  Score=79.91  Aligned_cols=141  Identities=16%  Similarity=0.148  Sum_probs=90.8

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      ..+.+.+.++|.+|+++|+|++.      |+.  |.        ..+.++|++++++||+|+||+ .+.++.+.+ ...+
T Consensus       250 ~~l~~~~~~li~~A~~~i~I~TP------YF~--p~--------~~l~~~L~~a~~rGv~V~Ii~-~~~~andfy-~~~d  311 (451)
T PRK09428        250 NLLNKTIFHLMASAEQKLTICTP------YFN--LP--------AILVRNIIRLLRRGKKVEIIV-GDKTANDFY-IPPD  311 (451)
T ss_pred             hHHHHHHHHHHhccCcEEEEEeC------CcC--CC--------HHHHHHHHHHHhcCCcEEEEc-CCcccccCc-CCCc
Confidence            45677888999999999999988      344  32        589999999999999999998 666543311 1111


Q ss_pred             -Cc--ccCCcH--HH--H-------hHhcCCC---cEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcc
Q 008859          321 -GV--MATHDE--ET--K-------KFFKHSS---VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRK  383 (551)
Q Consensus       321 -g~--~~t~~~--~~--~-------~~~~~~~---v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~  383 (551)
                       .+  ++....  +.  +       ..+ ..|   |++..   ++              .++-|-|.++||++       
T Consensus       312 ~~~~~~~~~py~ye~~lr~f~~~~~~li-~~G~l~v~i~~---~~--------------~~~~HaK~i~vD~~-------  366 (451)
T PRK09428        312 EPFKIIGALPYLYEINLRRFAKRLQYYI-DNGQLNVRLWK---DG--------------DNSYHLKGIWVDDR-------  366 (451)
T ss_pred             cHHHHhhhhHHHHHHhhhhhHHHhhhhh-hcCcceEEEEe---cC--------------CCcceEEEEEEeCC-------
Confidence             00  011000  00  0       112 233   44331   11              23459999999998       


Q ss_pred             eEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHh
Q 008859          384 ITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRK  458 (551)
Q Consensus       384 ~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~  458 (551)
                       +++|||.||...-|.-               |+                 -+.+.|..|. ..+...|++-...
T Consensus       367 -~~~iGS~Nld~RS~~l---------------n~-----------------E~~l~i~d~~-~~l~~~~~~E~~~  407 (451)
T PRK09428        367 -WMLLTGNNLNPRAWRL---------------DL-----------------ENALLIHDPK-QELAEQREKELEL  407 (451)
T ss_pred             -EEEEcCCCCChhHhhh---------------cc-----------------cceEEEECCh-HHHHHHHHHHHHH
Confidence             9999999997743431               22                 3455666666 7888888887765

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=97.86  E-value=4.2e-05  Score=84.67  Aligned_cols=106  Identities=17%  Similarity=0.376  Sum_probs=81.1

Q ss_pred             CCCcEEEEEECCe---eeEEeeecCCCCCCeEeeEEEEeecCC----------------CCeEEEEEEe-cCCCC-Ccee
Q 008859           79 TSDPYVTVVVPQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----------------LSNLEIQVKD-DDVFG-AQII  137 (551)
Q Consensus        79 tsDpYvtV~l~~~---~v~rTrvi~ns~nP~WnE~F~i~vah~----------------~~~l~f~Vkd-~d~~g-~~lI  137 (551)
                      ++||||+|...+.   ..-+|.+++.+.+|.|+|.|.|.+...                ...+.+++|+ .+.+. ++|+
T Consensus       150 ~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~Fl  229 (800)
T KOG2059|consen  150 QCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFL  229 (800)
T ss_pred             CCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhc
Confidence            3899999998652   225899999999999999999987765                3457788898 44444 8999


Q ss_pred             EEEEeecccccccceeeeEEEccC-CCCCC---CCCCceEEEEeeeeccCC
Q 008859          138 GTAAIPAHTIATGELISRWYDIIA-PSGSP---PKPGASIQLELKFTPCDK  184 (551)
Q Consensus       138 G~v~Ipl~~l~~g~~i~~w~~Ll~-~~gkp---~k~~G~L~lsl~f~p~~~  184 (551)
                      |.+.+|+........-+.||-|.. ++|+.   ....|.+++.+.|+....
T Consensus       230 Gevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V  280 (800)
T KOG2059|consen  230 GEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV  280 (800)
T ss_pred             eeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence            999999998885566788999853 23332   234588999999876543

>smart00155 PLDc Phospholipase D

Probab=97.44  E-value=9.6e-05  Score=48.96  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=22.1

Q ss_pred             ccCccceEEEccCCCCCCcceEEEEceeeccc
Q 008859          364 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD  395 (551)
Q Consensus       364 ~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~  395 (551)
                      .++|+|++|||++        .+|+||.||+.
T Consensus         3 ~~~H~K~~v~D~~--------~~~iGs~N~~~   26 (28)
T smart00155        3 GVLHTKLMIVDDE--------IAYIGSANLDG   26 (28)
T ss_pred             CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence            4679999999998        99999999986

Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.38  E-value=0.00017  Score=83.54  Aligned_cols=105  Identities=21%  Similarity=0.430  Sum_probs=83.6

Q ss_pred             EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 008859           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--   90 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--   90 (551)
                      .|-.|+|.|-|.-|++|+-..-                             |..             .||||+.+|..  
T Consensus      1520 sY~~~~LtImV~H~K~L~~Lqd-----------------------------g~~-------------P~pyVK~YLlPdp 1557 (1639)
T KOG0905|consen 1520 SYNNGTLTIMVMHAKGLALLQD-----------------------------GQD-------------PDPYVKTYLLPDP 1557 (1639)
T ss_pred             EEcCceEEEEhhhhcccccccC-----------------------------CCC-------------CCcceeEEecCCc
Confidence            4567999999999999952111                             111             79999999943  


Q ss_pred             --eeeEEeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEc
Q 008859           91 --ATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        91 --~~v~rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                        ....+|+|+.++.||.+||..... ....   ...|.++|+..+.+. ..++|.+.||+.++.-.++..+||+|
T Consensus      1558 ~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1558 RKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred             hHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence              445699999999999999998776 2222   467999999998887 79999999999998866666799998

>PLN02964 phosphatidylserine decarboxylase

Probab=97.34  E-value=0.00015  Score=81.71  Aligned_cols=86  Identities=21%  Similarity=0.363  Sum_probs=70.5

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCe-EEEEEEecCCCC-CceeEEEEeecccccccce--eee
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL--ISR  155 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~-l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~--i~~  155 (551)
                      .|+|..+..-+.++.||.+.+++.||+|||...|.|.....+ ..|.|+|.+.+. ++++|.+.+++..+...+.  +..
T Consensus        68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke  147 (644)
T PLN02964         68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE  147 (644)
T ss_pred             CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence            588888877777889999999999999999999988776444 599999999998 8999999999988876543  333


Q ss_pred             EEEccCCCCC
Q 008859          156 WYDIIAPSGS  165 (551)
Q Consensus       156 w~~Ll~~~gk  165 (551)
                      -|.++++++.
T Consensus       148 aF~lfD~dgd  157 (644)
T PLN02964        148 SFDLLDPSSS  157 (644)
T ss_pred             HHHHHCCCCC
Confidence            4777777654

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.00055  Score=70.25  Aligned_cols=101  Identities=24%  Similarity=0.346  Sum_probs=77.9

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~   92 (551)
                      .-|.|+|+++..|..||..+.                                          +||||.+.+..    .-
T Consensus       233 ~~l~vt~iRc~~l~ssDsng~------------------------------------------sDpyvS~~l~pdv~~~f  270 (362)
T KOG1013|consen  233 PGLIVTIIRCSHLASSDSNGY------------------------------------------SDPYVSQRLSPDVGKKF  270 (362)
T ss_pred             CceEEEEEEeeeeeccccCCC------------------------------------------CCccceeecCCCcchhh
Confidence            458899999999988886553                                          99999998853    33


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~  161 (551)
                      ..+|.+.+++.+|.+|++|.+.+.+.   ...+.++|||.+.-+ .+.+|-...-.  ...++....|+.-+-
T Consensus       271 kkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~~~  341 (362)
T KOG1013|consen  271 KKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRCLF  341 (362)
T ss_pred             cccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccccc
Confidence            46899999999999999999998876   356899999999874 78888755432  334556666776543

>PF13918 PLDc_3: PLD-like domain

Probab=97.10  E-value=0.0024  Score=60.93  Aligned_cols=69  Identities=23%  Similarity=0.291  Sum_probs=52.3

Q ss_pred             CCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhh-hcCCeEEEEE
Q 008859          227 LPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKS-EEGVRVLLLV  305 (551)
Q Consensus       227 ~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka-~~GV~V~iLv  305 (551)
                      .|+.....|++.    -.++|...|++|+++|||+--...|-+. ...+.+-     ...|.++|.++| +|||+||+||
T Consensus        71 SPp~~~~~gRT~----DldAIl~~I~~A~~fI~IsVMdY~P~~~-~~~~~~Y-----WP~ID~ALR~AA~~R~V~VRlLI  140 (177)
T PF13918_consen   71 SPPPFCPKGRTL----DLDAILSVIDSAKKFIYISVMDYLPTSR-YSKPNRY-----WPVIDDALRRAAIERGVKVRLLI  140 (177)
T ss_pred             CCcccCCCCCCc----HHHHHHHHHHhHhheEEEEEeecCCeee-cCCCCCc-----chhHHHHHHHHHHHcCCeEEEEE
Confidence            466666667654    4789999999999999999887777553 2223322     348899998886 8999999998

>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function

Probab=97.02  E-value=0.0035  Score=63.96  Aligned_cols=146  Identities=18%  Similarity=0.196  Sum_probs=88.2

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      ..+=|-+-..|.+|++.|-|..=.|       .|.         .-|.|||..+-+|||-||||+ |..+...  ++.+-
T Consensus       133 p~IKE~vR~~I~~A~kVIAIVMD~F-------TD~---------dIf~DLleAa~kR~VpVYiLL-D~~~~~~--Fl~Mc  193 (284)
T PF07894_consen  133 PHIKEVVRRMIQQAQKVIAIVMDVF-------TDV---------DIFCDLLEAANKRGVPVYILL-DEQNLPH--FLEMC  193 (284)
T ss_pred             CCHHHHHHHHHHHhcceeEEEeecc-------ccH---------HHHHHHHHHHHhcCCcEEEEe-chhcChH--HHHHH
Confidence            3567888999999999999987533       222         467787777779999999998 8764321  11110


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                      .-++.+    ...+++-.|+++-       +..+.-..-.+.-..-++|+++||++        .+..|..=++..  +.
T Consensus       194 ~~~~v~----~~~~~nmrVRsv~-------G~~y~~rsg~k~~G~~~eKF~lvD~~--------~V~~GSYSFtWs--~~  252 (284)
T PF07894_consen  194 EKLGVN----LQHLKNMRVRSVT-------GCTYYSRSGKKFKGQLKEKFMLVDGD--------KVISGSYSFTWS--SS  252 (284)
T ss_pred             HHCCCC----hhhcCCeEEEEec-------CCeeecCCCCeeeCcccceeEEEecc--------cccccccceeec--cc
Confidence            111111    1123333333331       00111111112344669999999998        888888766651  11


Q ss_pred             CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHH
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRW  456 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW  456 (551)
                      .-|                              +-+-..+.|.+|......|..-.
T Consensus       253 ~~~------------------------------r~~~~~~tGq~Ve~FD~EFR~Ly  278 (284)
T PF07894_consen  253 RVH------------------------------RNLVTVLTGQIVESFDEEFRELY  278 (284)
T ss_pred             ccc------------------------------cceeEEEeccccchHhHHHHHHH
Confidence            111                              24677899999999888887644

Some members of this family are annotated as being potential phospholipases but no literature was found to support this.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.0022  Score=70.50  Aligned_cols=80  Identities=23%  Similarity=0.332  Sum_probs=66.9

Q ss_pred             CCcEEEEEECC------eeeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859           80 SDPYVTVVVPQ------ATVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (551)
Q Consensus        80 sDpYvtV~l~~------~~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~  148 (551)
                      -.|||.|.+-+      .+..-|+...|+-.|.+||+|+|.+...    .-+|.|.|||.-.-. +.++|.+.+++.++.
T Consensus      1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred             cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence            35999998843      5667888888999999999999998765    345889999876555 789999999999999


Q ss_pred             ccceeeeEEEc
Q 008859          149 TGELISRWYDI  159 (551)
Q Consensus       149 ~g~~i~~w~~L  159 (551)
                      ....-..|+||
T Consensus      1225 ~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1225 DKGSCACWVPL 1235 (1283)
T ss_pred             hcCceeEeeec
Confidence            87778889999

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.91  E-value=0.00079  Score=70.80  Aligned_cols=97  Identities=16%  Similarity=0.339  Sum_probs=78.2

Q ss_pred             CCcEEEEEEC----CeeeEEeeecCCCCCCeEeeEEEEeecCC------------CCeEEEEEEecCCCC--CceeEEEE
Q 008859           80 SDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP------------LSNLEIQVKDDDVFG--AQIIGTAA  141 (551)
Q Consensus        80 sDpYvtV~l~----~~~v~rTrvi~ns~nP~WnE~F~i~vah~------------~~~l~f~Vkd~d~~g--~~lIG~v~  141 (551)
                      .|-||.+...    .....+|.|++++.+|.++|.|.+.+...            ...+.|+|+....|-  +.|+|++.
T Consensus       388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n  467 (523)
T KOG3837|consen  388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN  467 (523)
T ss_pred             HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence            5677777652    23446999999999999999999988762            345899999998874  89999999


Q ss_pred             eecccccccceeeeEEEccCCCCCCCCCCceEEEEeee
Q 008859          142 IPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF  179 (551)
Q Consensus       142 Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f  179 (551)
                      |.++.|.+.-+++..++|.+  |+.. .+|+|.+.++.
T Consensus       468 ikle~Len~cei~e~~~l~D--GRK~-vGGkLevKvRi  502 (523)
T KOG3837|consen  468 IKLEILENMCEICEYLPLKD--GRKA-VGGKLEVKVRI  502 (523)
T ss_pred             eeehhhhcccchhhceeccc--cccc-cCCeeEEEEEE
Confidence            99999998888999999954  3332 57888888875

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=96.91  E-value=0.00053  Score=78.70  Aligned_cols=87  Identities=23%  Similarity=0.408  Sum_probs=73.6

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee-eEEe
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT-VART   96 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~-v~rT   96 (551)
                      ..+|+|++|-+|...|..+.                                          +||||.|.+++.+ .-|+
T Consensus       614 LvrVyvv~A~~L~p~D~ng~------------------------------------------adpYv~l~lGk~~~~d~~  651 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGD------------------------------------------ADPYVKLLLGKKRTLDRA  651 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCC------------------------------------------cCceeeeeeccchhhhhh
Confidence            36789999999987776554                                          8999999998854 3477


Q ss_pred             eecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCC-CceeEEEEeeccc
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFG-AQIIGTAAIPAHT  146 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~  146 (551)
                      .-+.++.||++.+.|.+.+.-+ ...+++.|+|.|.++ ++.||...|.++.
T Consensus       652 ~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  652 HYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             hcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence            7889999999999999998877 456899999999998 9999999998864

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=0.0022  Score=67.01  Aligned_cols=86  Identities=19%  Similarity=0.383  Sum_probs=69.4

Q ss_pred             CCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEec-CCCC-CceeEEEEeecccccccc-e
Q 008859           80 SDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD-DVFG-AQIIGTAAIPAHTIATGE-L  152 (551)
Q Consensus        80 sDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~-d~~g-~~lIG~v~Ipl~~l~~g~-~  152 (551)
                      ++|||+|++..    ....+|+.-.++..|.+.++..|.-..+...|.++||-+ ..+. +.|+|.+.|-++++.-+. .
T Consensus       291 ~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~  370 (405)
T KOG2060|consen  291 PAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSP  370 (405)
T ss_pred             cCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhcccccc
Confidence            79999999854    223588888889999888888888888888899999964 3444 689999999999998666 7


Q ss_pred             eeeEEEccCCCCC
Q 008859          153 ISRWYDIIAPSGS  165 (551)
Q Consensus       153 i~~w~~Ll~~~gk  165 (551)
                      +.+||++......
T Consensus       371 ~igwyKlfgsssl  383 (405)
T KOG2060|consen  371 VIGWYKLFGSSSL  383 (405)
T ss_pred             ceeeeeccCCccC
Confidence            8899999766544

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=96.59  E-value=0.00054  Score=78.60  Aligned_cols=102  Identities=24%  Similarity=0.304  Sum_probs=76.6

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~   94 (551)
                      .|-.|++.|++|+.|+.+|+-+.                                          +|||+.|..-++. .
T Consensus       204 ~~~~lR~yiyQar~L~a~dk~~~------------------------------------------sdp~a~v~f~~qs-~  240 (1105)
T KOG1326|consen  204 IHSPLRSYIYQARALGAPDKDDE------------------------------------------SDPDAAVEFCGQS-K  240 (1105)
T ss_pred             hhhhhHHHHHHHHhhcCCCcccC------------------------------------------CCchhhhhccccc-c
Confidence            35567788888888887776554                                          8999999987766 3


Q ss_pred             EeeecCCCCCCeEeeEEEEe---e---cC----CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859           95 RTRVLKNSQEPVWNEHFNIP---L---AH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~---v---ah----~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll  160 (551)
                      .|-++.++.||.|++...|.   +   +|    .-..+.|+|+|.+..| ++++|+......-+.. ...-.|+++.
T Consensus       241 ~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~  316 (1105)
T KOG1326|consen  241 ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTM  316 (1105)
T ss_pred             eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEee
Confidence            89999999999999998884   1   11    1345789999999999 8999998774433332 2345688873

>TIGR03705 poly_P_kin polyphosphate kinase 1

Probab=96.51  E-value=0.0059  Score=69.72  Aligned_cols=143  Identities=20%  Similarity=0.184  Sum_probs=89.1

Q ss_pred             cCCCCCCCCcchHHHHHHHHHhccc----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeC
Q 008859          232 LDGGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD  307 (551)
Q Consensus       232 l~~G~~y~~~~~~~~l~~aI~~A~~----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD  307 (551)
                      |..|+........+-+..+|..||+    +|+|....+      .           +..+.+.|..++++||+|+|+| .
T Consensus       494 l~~~P~~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l------~-----------D~~ii~aL~~As~aGV~V~Liv-R  555 (672)
T TIGR03705       494 LLVSPFTLRKRLLELIDREIENARAGKPARIIAKMNSL------V-----------DPDLIDALYEASQAGVKIDLIV-R  555 (672)
T ss_pred             HHhCcchHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC------C-----------CHHHHHHHHHHHHCCCeEEEEE-e
Confidence            4455544445566666778899998    999988743      1           3699999999999999999998 5


Q ss_pred             CCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEE
Q 008859          308 DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF  387 (551)
Q Consensus       308 ~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vaf  387 (551)
                      +.-...      .|+.+.          ..++.+.          ++     .+-+.. |-|+....+.     +.-.+|
T Consensus       556 GiCcL~------pgipg~----------sd~i~v~----------si-----v~r~Le-h~rIy~f~~~-----~d~~~~  598 (672)
T TIGR03705       556 GICCLR------PGVPGL----------SENIRVR----------SI-----VGRFLE-HSRIYYFGNG-----GEEKVY  598 (672)
T ss_pred             cccccC------CCCCCC----------CCCEEEE----------EE-----hhHhhC-cCEEEEEeCC-----CCcEEE
Confidence            443221      111110          1122221          11     122334 7888887543     123899


Q ss_pred             EceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHH-H-HHHHHHHhhcC
Q 008859          388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVL-I-NFEQRWRKATK  461 (551)
Q Consensus       388 vGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~-~-~F~~rW~~~~~  461 (551)
                      +|+.|+...-++                                -=..+.+-|..|....-. . .+.-.|+...+
T Consensus       599 igSAn~m~Rnl~--------------------------------~r~E~~~~i~d~~~~~~l~~~il~~~l~Dn~k  642 (672)
T TIGR03705       599 ISSADWMTRNLD--------------------------------RRVEVLFPIEDPTLKQRVLDEILEAYLADNVK  642 (672)
T ss_pred             EECCCCCCCccc--------------------------------ceEEEEEEEcCHHHHHHHHHHHHHHhCccccc
Confidence            999998752121                                114788888888665554 5 67777766544

Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.

>PRK05443 polyphosphate kinase; Provisional

Probab=96.48  E-value=0.019  Score=66.03  Aligned_cols=134  Identities=19%  Similarity=0.171  Sum_probs=85.0

Q ss_pred             cchHHHHHHHHHhccc----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccC
Q 008859          241 GTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~  316 (551)
                      ....+.+..+|.+||+    +|+|....+         +        +..+.+.|..+|++||+|+|+| .+.-+..   
T Consensus       512 ~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l---------~--------d~~ii~aL~~As~~GV~V~liV-RGiC~l~---  570 (691)
T PRK05443        512 ERLLELIDREIANARAGKPARIIAKMNSL---------V--------DPQIIDALYEASQAGVKIDLIV-RGICCLR---  570 (691)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEcCCC---------C--------CHHHHHHHHHHHHCCCeEEEEE-ecccccC---
Confidence            4566667778888998    999988743         1        3699999999999999999998 5443321   


Q ss_pred             CCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecccc
Q 008859          317 VKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (551)
Q Consensus       317 ~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~  396 (551)
                         .|+.+.          ..++.|          .+++.     -+.. |-|+....+.     +...+|+|+.|+...
T Consensus       571 ---pgipg~----------sd~i~v----------~s~v~-----r~Le-h~rIy~f~~g-----d~~~~~iGSAn~d~R  616 (691)
T PRK05443        571 ---PGVPGL----------SENIRV----------RSIVG-----RFLE-HSRIYYFGNG-----GDEEVYISSADWMPR  616 (691)
T ss_pred             ---CCCCCC----------CCCEEE----------HHHHH-----HHHh-cCEEEEEeCC-----CCcEEEEECCCCCcc
Confidence               111110          011111          01111     1222 4677777532     112999999999762


Q ss_pred             ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHH-HHHHHHHHHHHHHhhcC
Q 008859          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPA-AYDVLINFEQRWRKATK  461 (551)
Q Consensus       397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPa-a~dv~~~F~~rW~~~~~  461 (551)
                      -++                                -=..+.+-|..|. +..+...|...|....+
T Consensus       617 sl~--------------------------------~r~Ev~~~i~d~~~~~~l~~~~~~~l~dn~k  650 (691)
T PRK05443        617 NLD--------------------------------RRVEVLFPILDPRLKQRLLEILEIQLADNVK  650 (691)
T ss_pred             ccc--------------------------------ceEEEeEEEeCHHHHHHHHHHHHHHHhhhhh
Confidence            221                                1157888888885 56666789999987655

>KOG3603 consensus Predicted phospholipase D [General function prediction only]

Probab=96.44  E-value=0.12  Score=55.26  Aligned_cols=149  Identities=16%  Similarity=0.104  Sum_probs=88.8

Q ss_pred             chHHHHHHHHHhccceEEEEEEEEeeeeeeeecCC-CCCC-CCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCC
Q 008859          242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQT-RPLP-RGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKT  319 (551)
Q Consensus       242 ~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~-~~~p-~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~  319 (551)
                      ...++-++.|++|+++++|+.|-.+    |.-.+. .++. ..-+..+..+|..++.+||.|||.. .......   .  
T Consensus        72 sT~eaW~~Ll~sA~~eldIas~yws----L~~~d~~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~---~--  141 (456)
T KOG3603|consen   72 STKEAWLELLSTAQEELDIASFYWS----LTGKDTGVVDSSTQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP---P--  141 (456)
T ss_pred             cHHHHHHHHhhccceEEEEEEEeec----cccceeccCCCcchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC---C--
Confidence            3457889999999999999876432    111110 0000 1124678889999999999999997 3332110   0  


Q ss_pred             CCcccCCcHHHHhHhcCCC-cEEEe--cCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecccc
Q 008859          320 PGVMATHDEETKKFFKHSS-VNCVL--APRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (551)
Q Consensus       320 ~g~~~t~~~~~~~~~~~~~-v~~~l--~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~  396 (551)
                             +.+ ...|...| +++.-  .++++.             -.-.|-|+.|||.+        .=|+||.|+.. 
T Consensus       142 -------~~d-~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW-  191 (456)
T KOG3603|consen  142 -------NAD-LQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW-  191 (456)
T ss_pred             -------ccc-HHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch-
Confidence                   112 22344455 55432  122221             12349999999998        88999999987 


Q ss_pred             ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEe--CHHHHHHHHHHHHHHHhhcC
Q 008859          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD--GPAAYDVLINFEQRWRKATK  461 (551)
Q Consensus       397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~--GPaa~dv~~~F~~rW~~~~~  461 (551)
                      |=-|+          +                     .-+.+.++  =-.|.||...|++.|..-..
T Consensus       192 rSlTq----------v---------------------kElGv~v~NCpclakDL~kiFe~yW~lg~~  227 (456)
T KOG3603|consen  192 RSLTQ----------V---------------------KELGVVVRNCPCLAKDLKKIFERYWYLGNA  227 (456)
T ss_pred             hhccc----------e---------------------eEeeeEEecChhHHHHHHHHHHHHhcCCCC
Confidence            21110          0                     11111111  12699999999999986443

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=96.44  E-value=0.012  Score=67.12  Aligned_cols=111  Identities=23%  Similarity=0.376  Sum_probs=80.9

Q ss_pred             EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 008859           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---   90 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---   90 (551)
                      ..-++|.|+|+++.-|..++                                              ...||.|.+-+   
T Consensus       700 vIA~t~sV~VISgqFLSdrk----------------------------------------------vgtyVEVdmfgLP~  733 (1189)
T KOG1265|consen  700 VIAATLSVTVISGQFLSDRK----------------------------------------------VGTYVEVDMFGLPT  733 (1189)
T ss_pred             eEEeeEEEEEEeeeeccccc----------------------------------------------cCceEEEEecCCCc
Confidence            47899999999999887544                                              34699999854   


Q ss_pred             ---eeeEEeeecCC-CCCCeEee-EEEEe--ecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCC
Q 008859           91 ---ATVARTRVLKN-SQEPVWNE-HFNIP--LAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (551)
Q Consensus        91 ---~~v~rTrvi~n-s~nP~WnE-~F~i~--vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~  163 (551)
                         .+..||+++.+ +.||+|+| .|.|.  +-...+.|.|.|++.   |..+||.-.+|++.|.+|-   +.+-|..+.
T Consensus       734 Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE---ggK~ig~RIlpvd~l~~GY---rhv~LRse~  807 (1189)
T KOG1265|consen  734 DTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE---GGKFIGQRILPVDGLNAGY---RHVCLRSES  807 (1189)
T ss_pred             hhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc---CCceeeeeccchhcccCcc---eeEEecCCC
Confidence               24468888765 99999995 47775  444466799999987   4689999999999999884   334555555


Q ss_pred             CCCCCCCceEEEEe
Q 008859          164 GSPPKPGASIQLEL  177 (551)
Q Consensus       164 gkp~k~~G~L~lsl  177 (551)
                      +.|. ....|.|.+
T Consensus       808 Nqpl-~lp~Lfv~i  820 (1189)
T KOG1265|consen  808 NQPL-TLPALFVYI  820 (1189)
T ss_pred             CCcc-ccceeEEEE
Confidence            5554 234444443

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.38  E-value=0.0039  Score=68.35  Aligned_cols=69  Identities=29%  Similarity=0.468  Sum_probs=55.9

Q ss_pred             CCcEEEEEEC---C--eeeEEeeecCCCCCCeEeeEEEEeecC-----CCCeEEEEEEecCCCC-CceeEEEEeeccccc
Q 008859           80 SDPYVTVVVP---Q--ATVARTRVLKNSQEPVWNEHFNIPLAH-----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA  148 (551)
Q Consensus        80 sDpYvtV~l~---~--~~v~rTrvi~ns~nP~WnE~F~i~vah-----~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~  148 (551)
                      +|||..+.--   +  ..+.||.+++|+.+|.|. .|.+++..     ....+++.++|.+..+ .++||.+.-++.++.
T Consensus       157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ  235 (529)
T ss_pred             CCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence            8999987642   1  467899999999999997 56665433     2466889999999998 599999999999886


Q ss_pred             c
Q 008859          149 T  149 (551)
Q Consensus       149 ~  149 (551)
                      .
T Consensus       236 ~  236 (529)
T KOG1327|consen  236 E  236 (529)
T ss_pred             c
Confidence            4

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.36  E-value=0.094  Score=47.84  Aligned_cols=102  Identities=19%  Similarity=0.252  Sum_probs=69.7

Q ss_pred             cEEEEEECCee--eEEeeecCC-CCCCeEeeEEEEeecCC---------CCeEEEEEEecCCCCC-ceeEEEEeeccccc
Q 008859           82 PYVTVVVPQAT--VARTRVLKN-SQEPVWNEHFNIPLAHP---------LSNLEIQVKDDDVFGA-QIIGTAAIPAHTIA  148 (551)
Q Consensus        82 pYvtV~l~~~~--v~rTrvi~n-s~nP~WnE~F~i~vah~---------~~~l~f~Vkd~d~~g~-~lIG~v~Ipl~~l~  148 (551)
                      .||...-+...  .+.|..... ...=.|||.|.+.|.-.         ...+.|.|+....-+. ..+|.+.|.|.+.+
T Consensus        26 v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~  105 (143)
T PF10358_consen   26 VFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYA  105 (143)
T ss_pred             EEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhh
Confidence            45555444443  345554433 45579999999975432         3457899988765454 59999999999998


Q ss_pred             c--cceeeeEEEccCCCCCCCCCCceEEEEeeeeccCCCCc
Q 008859          149 T--GELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPL  187 (551)
Q Consensus       149 ~--g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~~~~  187 (551)
                      .  .+.+..-++|...    .+..+.|+|++++.+...++.
T Consensus       106 ~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~~~~~~  142 (143)
T PF10358_consen  106 NEDEEPITVRLLLKKC----KKSNATLSISISLSELREDPD  142 (143)
T ss_pred             CcCCCcEEEEEeCccC----CCCCcEEEEEEEEEECccCCC
Confidence            7  3566777777332    245789999999988766543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.0014  Score=67.43  Aligned_cols=124  Identities=23%  Similarity=0.289  Sum_probs=88.8

Q ss_pred             EEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----eee
Q 008859           18 DLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----ATV   93 (551)
Q Consensus        18 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~v   93 (551)
                      .|+.+|..|+.|..|+..+.                                          .|||+...+..    ...
T Consensus        94 ~~~~tl~~a~~lk~~~~~~~------------------------------------------~d~~~~~~llpga~kl~s  131 (362)
T KOG1013|consen   94 MLDTTLDRAKGLKPMDINGL------------------------------------------ADPYVKLHLLPGAGKLNS  131 (362)
T ss_pred             hcceeechhcccchhhhhhh------------------------------------------cchHHhhhcccchhhhhh
Confidence            47899999999999987664                                          79999988753    223


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccc--eeeeEEEccCCCCC-
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISRWYDIIAPSGS-  165 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~--~i~~w~~Ll~~~gk-  165 (551)
                      -||.+..|+.||.|+|.-...--..    ...+.+.|.|++.+. .+++|+..+++..+.+-+  ...-||.-.-+.++ 
T Consensus       132 lr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~ra  211 (362)
T KOG1013|consen  132 LRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERA  211 (362)
T ss_pred             hhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccc
Confidence            5888999999999998866552221    334678888999888 899999999999888533  34445543222111 


Q ss_pred             ---CCCCCceEEEEeeeeccC
Q 008859          166 ---PPKPGASIQLELKFTPCD  183 (551)
Q Consensus       166 ---p~k~~G~L~lsl~f~p~~  183 (551)
                         ..+..|+|.+++.|-...
T Consensus       212 d~~~~E~rg~i~isl~~~s~~  232 (362)
T KOG1013|consen  212 DRDEDEERGAILISLAYSSTT  232 (362)
T ss_pred             cccchhhccceeeeeccCcCC
Confidence               135678899888875543

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=95.66  E-value=0.0089  Score=50.51  Aligned_cols=76  Identities=14%  Similarity=0.339  Sum_probs=56.8

Q ss_pred             cEEE--EEECCeeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeE
Q 008859           82 PYVT--VVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRW  156 (551)
Q Consensus        82 pYvt--V~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w  156 (551)
                      -|++  +.+.+....+|.+...+.||+++|+|.|.++-.   .-.|.|.|.. ..-..+.||.+.+.++++- .++.+.|
T Consensus        23 i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~g-eeE~~HW  100 (103)
T cd08684          23 IYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLS-TQETDHW  100 (103)
T ss_pred             eEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCC-HHHhhhh
Confidence            4554  455677778999999999999999999998765   3457788877 2223789999999998775 3456677


Q ss_pred             EEc
Q 008859          157 YDI  159 (551)
Q Consensus       157 ~~L  159 (551)
                      .++
T Consensus       101 ~e~  103 (103)
T cd08684         101 LEI  103 (103)
T ss_pred             hcC
Confidence            653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PLN03008 Phospholipase D delta

Probab=95.48  E-value=0.016  Score=66.83  Aligned_cols=75  Identities=16%  Similarity=0.077  Sum_probs=42.6

Q ss_pred             ecCCCCCCCC-cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecC-CCCCCCCCchhHHHHHHHhhh--cCCeEEEEE
Q 008859          231 PLDGGKLYKP-GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRGGDLTLGELLKYKSE--EGVRVLLLV  305 (551)
Q Consensus       231 ~l~~G~~y~~-~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~-~~~~p~g~~~~l~elL~~ka~--~GV~V~iLv  305 (551)
                      -|..|+...- ..+..+.++||++|||+|||+.=-|-...+.+... +.....-....|.+.|.+|.+  ++-+|+|++
T Consensus       555 ~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi  633 (868)
T PLN03008        555 HLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI  633 (868)
T ss_pred             ccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence            3555554443 45788999999999999999864222221111000 000000013456666666655  478898887

>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator

Probab=95.48  E-value=0.065  Score=53.53  Aligned_cols=50  Identities=30%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD  307 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD  307 (551)
                      +...+.+-+.|++|++.|+|..|.           +      .-..|.+.|+++++|||+|.++++.
T Consensus         9 ~~I~~~i~elI~~Ae~eI~is~~~-----------~------~l~~l~~~L~~a~~rGV~V~li~~~   58 (233)
T PF11495_consen    9 ETILERIRELIENAESEIYISIPP-----------E------FLEELRDELEEAVDRGVKVKLIVFG   58 (233)
T ss_dssp             HHHHHHHHHHHHC-SSEEEEEE-G-----------G------GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             HHHHHHHHHHHHHhheEEEEEcCH-----------H------HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence            457788999999999999999982           1      1368999999999999999999965

The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.42  E-value=0.29  Score=51.72  Aligned_cols=103  Identities=16%  Similarity=0.248  Sum_probs=78.8

Q ss_pred             CcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC--------CCeEEEEEEecC-CCC-CceeEEEEeecccc---
Q 008859           81 DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDD-VFG-AQIIGTAAIPAHTI---  147 (551)
Q Consensus        81 DpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~--------~~~l~f~Vkd~d-~~g-~~lIG~v~Ipl~~l---  147 (551)
                      .-.+...+++... -|-.+..+..|.||......+..-        ...|.++++..| .-+ -+.||.+.+++...   
T Consensus        19 ~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~   97 (340)
T PF12416_consen   19 PIVVEAKFNGESL-ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVP   97 (340)
T ss_pred             cEEEEEEeCCcee-eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccc
Confidence            4577788888764 677777789999999988887753        456888888887 334 69999999999988   


Q ss_pred             ccc--ceeeeEEEccCCCCCCCCCCceEEEEeeeeccCC
Q 008859          148 ATG--ELISRWYDIIAPSGSPPKPGASIQLELKFTPCDK  184 (551)
Q Consensus       148 ~~g--~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~~  184 (551)
                      ..+  .....||+|++.+.+-.+...+|.++|.......
T Consensus        98 ~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~  136 (340)
T PF12416_consen   98 QEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK  136 (340)
T ss_pred             cccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence            555  4567899999886555456788888887766544

>PLN02352 phospholipase D epsilon

Probab=95.35  E-value=0.049  Score=62.63  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=39.8

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCC-CCCCCCCchhHHHHHHHhhhc--CCeEEEEE
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQT-RPLPRGGDLTLGELLKYKSEE--GVRVLLLV  305 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~-~~~p~g~~~~l~elL~~ka~~--GV~V~iLv  305 (551)
                      ..+..++.+||++|||+|||+.=-|-...+.+.... ...-.-.+..|.+.|.+|.++  +-+|+|++
T Consensus       452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi  519 (758)
T PLN02352        452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI  519 (758)
T ss_pred             hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            679999999999999999998643321111221110 000000134677777777665  68888887

>PLN02270 phospholipase D alpha

Probab=95.25  E-value=0.05  Score=62.76  Aligned_cols=65  Identities=22%  Similarity=0.165  Sum_probs=37.6

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecC-CCCCCCC----CchhHHHHHHHhhh--cCCeEEEEE
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQ-TRPLPRG----GDLTLGELLKYKSE--EGVRVLLLV  305 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~-~~~~p~g----~~~~l~elL~~ka~--~GV~V~iLv  305 (551)
                      .++...+.+||++|+|+|||+.=-|-....-+... -.+...|    ....|...|.+|.+  ++-+|+|++
T Consensus       498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi  569 (808)
T PLN02270        498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV  569 (808)
T ss_pred             hHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence            57889999999999999999764322221111100 0000000    12355555666555  478999987

>PLN02866 phospholipase D

Probab=95.12  E-value=0.17  Score=59.96  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=47.9

Q ss_pred             CcccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchh
Q 008859          207 PLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT  286 (551)
Q Consensus       207 p~r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~  286 (551)
                      +.+..|+|++.-.+-         .=..|-....+.+.++.+++|++|+|+|||+.=.      ++..-....+  ....
T Consensus       705 ~~~~~c~~QivRS~~---------~WS~G~~~~E~SI~~AYi~~I~~A~hfIYIENQF------Fis~~~~~~~--i~N~  767 (1068)
T PLN02866        705 GPRVSCRCQVIRSVS---------QWSAGTSQVEESIHAAYCSLIEKAEHFIYIENQF------FISGLSGDDT--IQNR  767 (1068)
T ss_pred             CCCCeEEEEEEeecc---------cccCCCCchHHHHHHHHHHHHHhcccEEEEeccc------cccccccccc--ccch
Confidence            345567777776542         1133432223679999999999999999998742      2211000000  1234


Q ss_pred             HHHHHH----HhhhcC--CeEEEEE
Q 008859          287 LGELLK----YKSEEG--VRVLLLV  305 (551)
Q Consensus       287 l~elL~----~ka~~G--V~V~iLv  305 (551)
                      ++++|.    +|+++|  .+|+|++
T Consensus       768 I~~AL~~RI~rA~~~~~~frviIVi  792 (1068)
T PLN02866        768 VLEALYRRILRAHKEKKCFRVIIVI  792 (1068)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            555554    776665  6677776

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.36  E-value=0.27  Score=46.40  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=43.8

Q ss_pred             CCcEEEEEE--CCeeeE---EeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCC-C----CceeEEEEeecc
Q 008859           80 SDPYVTVVV--PQATVA---RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVF-G----AQIIGTAAIPAH  145 (551)
Q Consensus        80 sDpYvtV~l--~~~~v~---rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~-g----~~lIG~v~Ipl~  145 (551)
                      +|.||++.+  ++..+.   .|.-+. ..++.|||...|++.-.    .+.|.|+|++...- +    ...||.+.+++-
T Consensus        26 ~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF  104 (158)
T cd08398          26 DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF  104 (158)
T ss_pred             CeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence            678999876  343321   343333 36899999988876543    46799999986431 1    256888888775


Q ss_pred             c
Q 008859          146 T  146 (551)
Q Consensus       146 ~  146 (551)
                      +
T Consensus       105 d  105 (158)
T cd08398         105 D  105 (158)
T ss_pred             C
Confidence            5

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]

Probab=94.34  E-value=0.28  Score=47.20  Aligned_cols=144  Identities=20%  Similarity=0.286  Sum_probs=94.0

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      +.....|.++|+.|.+...+.+++..              . +-.-|.+.|..+...||+++||- ++.-+..       
T Consensus        38 e~il~~Li~~l~k~~ef~IsVaFit~--------------s-G~sll~~~L~d~~~Kgvkgkilt-s~YlnfT-------   94 (198)
T COG3886          38 EKILPRLIDELEKADEFEISVAFITE--------------S-GLSLLFDLLLDLVNKGVKGKILT-SDYLNFT-------   94 (198)
T ss_pred             hhHHHHHHHHHhcCCeEEEEEEEeeC--------------c-cHHHHHHHHHHHhcCCceEEEec-ccccCcc-------
Confidence            56889999999999999999987431              1 24677899999999999999996 5543322       


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                           +....++.+.-.+|+|++.- .+              ...+|-|-.|.-..     ....|++|+.||+++=.-.
T Consensus        95 -----dP~al~~Ll~~~nve~r~~~-~~--------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~  149 (198)
T COG3886          95 -----DPVALRKLLMLKNVELRVST-IG--------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV  149 (198)
T ss_pred             -----CHHHHHHHHhhhccceEEEe-cC--------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence                 22233444444557776521 11              13458887775443     3358999999999843211


Q ss_pred             CcccccccccccccCCCCCCCCCCCCCCCCCCee-EeeEEEeCHHHHHHHHHHHHHHH-hhcC
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH-DLHCRLDGPAAYDVLINFEQRWR-KATK  461 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWh-D~h~~i~GPaa~dv~~~F~~rW~-~~~~  461 (551)
                                                   ...|- -+...-.|-.|..+...|+..|. +.+.
T Consensus       150 -----------------------------n~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~~~t~  183 (198)
T COG3886         150 -----------------------------NEEWNLKVSSSKNGDIVKEVKVTFERQFQNKITP  183 (198)
T ss_pred             -----------------------------CHHHHhhhccccccchHHHHHHHHHHHHHhhccc
Confidence                                         01121 11122357789999999999998 4443

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=94.33  E-value=0.28  Score=41.83  Aligned_cols=84  Identities=19%  Similarity=0.277  Sum_probs=63.9

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEc
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ++..+.+.+++..++.|.-. ...+.-|+++|.|.+.... +|++.|+-.|-  ..+-|..++.+++...+    .-.++
T Consensus         9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdRsR-ELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~l   80 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELERSR-ELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLDM   80 (98)
T ss_pred             cceEEEEEEcCeEEeecccc-ccccccccceeEEEeeccc-EEEEEEEEecc--hhhhhheeeEhhhhccc----ceecc
Confidence            67889999999999999764 3467899999999997654 89999987765  56778888888884322    12233


Q ss_pred             cCCCCCCCCCCceEEEEeee
Q 008859          160 IAPSGSPPKPGASIQLELKF  179 (551)
Q Consensus       160 l~~~gkp~k~~G~L~lsl~f  179 (551)
                              .+.|.|...+.|
T Consensus        81 --------epqg~l~~ev~f   92 (98)
T cd08687          81 --------EPQLCLVAELTF   92 (98)
T ss_pred             --------ccccEEEEEEEe
Confidence                    456888888887

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=94.10  E-value=0.17  Score=58.56  Aligned_cols=65  Identities=15%  Similarity=0.030  Sum_probs=35.9

Q ss_pred             CCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhc--CCeEEEEE
Q 008859          237 LYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEE--GVRVLLLV  305 (551)
Q Consensus       237 ~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~--GV~V~iLv  305 (551)
                      .......-.+...+|++|+|+|||+.=-|=....=+  ......  .+..|.+-+.+|-++  --+|+|++
T Consensus       561 ~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~--~~~~n~--v~~ela~rIv~a~ra~e~frVYIVI  627 (887)
T KOG1329|consen  561 NEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNW--DSVLNK--VGDELALRIVKAIRAGEKFRVYIVI  627 (887)
T ss_pred             CchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCC--Ccccch--HHHHHHHHHHHHHhcCCceEEEEEE
Confidence            333355778899999999999999863221110001  110000  123444444454444  57888887

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=93.42  E-value=0.62  Score=43.73  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=73.8

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCC--------------CeEEEEEEecCCCC-CceeEEEEeec
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL--------------SNLEIQVKDDDVFG-AQIIGTAAIPA  144 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~--------------~~l~f~Vkd~d~~g-~~lIG~v~Ipl  144 (551)
                      +-.++.+.+.+++ .||+.+.-+.+|.++|.|.|++....              ..|++.|-.-|..+ ..++|.-.+..
T Consensus        34 s~~~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldW  112 (156)
T PF15627_consen   34 STFTLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDW  112 (156)
T ss_pred             eEEEEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehH
Confidence            4456666667877 79999999999999999999987752              45777777777777 68999999999


Q ss_pred             cccccccee--eeEEEccCCCCCCCCCCceEEEEeeeeccC
Q 008859          145 HTIATGELI--SRWYDIIAPSGSPPKPGASIQLELKFTPCD  183 (551)
Q Consensus       145 ~~l~~g~~i--~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~  183 (551)
                      ..++.....  .--..|.+......-..|.|.+++...|..
T Consensus       113 R~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen  113 RKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             HHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence            888754333  333444443333112468899999888764

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=92.59  E-value=0.28  Score=50.53  Aligned_cols=96  Identities=18%  Similarity=0.157  Sum_probs=60.9

Q ss_pred             CCCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEE
Q 008859           79 TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWY  157 (551)
Q Consensus        79 tsDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~  157 (551)
                      |-+.||.+..+.+..+||+|-.....-.|.|+|++.+-. ...+.+-|+.+++-- ..+.-...|.+..+.. ..-++-+
T Consensus        73 t~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~r-qspd~~~  150 (442)
T KOG1452|consen   73 TVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKLCHLGLLEAFVVDR-QSPDRVV  150 (442)
T ss_pred             eeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhccccccchhhhhhhhh-cCCccee
Confidence            368999999998877899998777777999999998753 335667777766543 4443222343433332 1222223


Q ss_pred             EccCCCCCCCCCCceEEEEeeeecc
Q 008859          158 DIIAPSGSPPKPGASIQLELKFTPC  182 (551)
Q Consensus       158 ~Ll~~~gkp~k~~G~L~lsl~f~p~  182 (551)
                      -+      ..++.|++.+.|.+..-
T Consensus       151 Al------~lePrgq~~~r~~~~Dp  169 (442)
T KOG1452|consen  151 AL------YLEPRGQPPLRLPLADP  169 (442)
T ss_pred             ee------ecccCCCCceecccCCh
Confidence            32      12456888888877553

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.57  E-value=0.4  Score=45.23  Aligned_cols=69  Identities=25%  Similarity=0.313  Sum_probs=51.0

Q ss_pred             CCCcEEEEEE--CCeee---EEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccc
Q 008859           79 TSDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI  147 (551)
Q Consensus        79 tsDpYvtV~l--~~~~v---~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l  147 (551)
                      .++.||++.|  ++..+   -+|..+.-+..+.|||...|++.-.    .+.|.|+||+.+..+ ...||.+.+++-+-
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            3899999977  33322   2565555577789999999986654    467999999977655 67899998887653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.54  E-value=0.77  Score=43.87  Aligned_cols=67  Identities=13%  Similarity=0.183  Sum_probs=43.2

Q ss_pred             CCcEEEEEE--CCeee---EEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-----------------
Q 008859           80 SDPYVTVVV--PQATV---ARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-----------------  133 (551)
Q Consensus        80 sDpYvtV~l--~~~~v---~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-----------------  133 (551)
                      .+.||++.|  ++..+   ..|....-+.++.|||.+.|++.-.    .+.|.|+|++.....                 
T Consensus        27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~  106 (173)
T cd08693          27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKD  106 (173)
T ss_pred             ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCc
Confidence            567888765  44332   2454444457799999998876543    467999999854321                 


Q ss_pred             CceeEEEEeeccc
Q 008859          134 AQIIGTAAIPAHT  146 (551)
Q Consensus       134 ~~lIG~v~Ipl~~  146 (551)
                      ...||.+.+++-+
T Consensus       107 ~~~ig~~n~~LFd  119 (173)
T cd08693         107 DNPIAWVNTMVFD  119 (173)
T ss_pred             ceEEEEEeEEEEc
Confidence            3567777666644

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.46  E-value=1  Score=42.00  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             CCcEEEEEE--CCe---eeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC---CceeEEEEeecccc
Q 008859           80 SDPYVTVVV--PQA---TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTI  147 (551)
Q Consensus        80 sDpYvtV~l--~~~---~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g---~~lIG~v~Ipl~~l  147 (551)
                      .+.||++.|  ++.   .+..|+....+.++.|||...|++.-.    .+.|.|+|++.+..+   ...||.+.+++-+.
T Consensus        28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence            567888866  332   222444443347899999998875443    567999999876543   48899999988664

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=90.52  E-value=1.4  Score=41.82  Aligned_cols=69  Identities=14%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             CCcEEEEEECCeeeEEeeecCC--CCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccc
Q 008859           80 SDPYVTVVVPQATVARTRVLKN--SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA  148 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~n--s~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~  148 (551)
                      ...|++|.+.+..|.+|+...-  ...=.++|.|.+.+..--..|.++|+.....++.+|+.+.||+-...
T Consensus        37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST  107 (168)
T ss_pred             eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence            5789999999999999987544  33457889999999888889999999998877999999999986543

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=89.33  E-value=1.4  Score=40.41  Aligned_cols=74  Identities=20%  Similarity=0.301  Sum_probs=48.7

Q ss_pred             CcEEEEEE--CCe----eeEEeeecCCC-CCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-C----ceeEEEEeec
Q 008859           81 DPYVTVVV--PQA----TVARTRVLKNS-QEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-A----QIIGTAAIPA  144 (551)
Q Consensus        81 DpYvtV~l--~~~----~v~rTrvi~ns-~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~----~lIG~v~Ipl  144 (551)
                      +.||++.|  ++.    .+.+|....-+ .++.|||...|++.-.    .+.|.|+|+..+... .    ..||.+.+++
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l   82 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL   82 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence            45777776  443    33366665555 7999999988875432    567999999876655 3    6999999998


Q ss_pred             ccccccceeee
Q 008859          145 HTIATGELISR  155 (551)
Q Consensus       145 ~~l~~g~~i~~  155 (551)
                      -+. .|....|
T Consensus        83 Fd~-~~~L~~G   92 (142)
T PF00792_consen   83 FDY-RGQLRQG   92 (142)
T ss_dssp             B-T-TSBBEEE
T ss_pred             ECC-CCcccCC
Confidence            765 3443333

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.28  E-value=0.32  Score=54.94  Aligned_cols=96  Identities=14%  Similarity=0.039  Sum_probs=67.7

Q ss_pred             CCcEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccc-cceeeeEE
Q 008859           80 SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWY  157 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~-g~~i~~w~  157 (551)
                      .+||+.|.+.....+.+.+.+.+..|.|+|+|++. .+....+.+.|+.+.... +...-.+.+-.+++.. ....+.|.
T Consensus        28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~-v~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~  106 (694)
T KOG0694|consen   28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVE-VVAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV  106 (694)
T ss_pred             hhhhheeccceeecccccCCCCCCCchhhhheeee-eecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence            68999999988777777777779999999999999 445557888888876555 4444445555555442 22355688


Q ss_pred             EccCCCCCCCCCCceEEEEeeeeccCC
Q 008859          158 DIIAPSGSPPKPGASIQLELKFTPCDK  184 (551)
Q Consensus       158 ~Ll~~~gkp~k~~G~L~lsl~f~p~~~  184 (551)
                      .+        +..|.+.+.+.++-...
T Consensus       107 ~~--------~~~g~~~~~~~~~~~~~  125 (694)
T KOG0694|consen  107 LI--------EELGTLLKPAALTGTLE  125 (694)
T ss_pred             cc--------ccccceeeeecccCcCC
Confidence            75        33477777777666544

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.02  E-value=3.2  Score=39.48  Aligned_cols=68  Identities=18%  Similarity=0.305  Sum_probs=44.2

Q ss_pred             CCcEEEEEE--CCeeeE---EeeecC--C--CCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC----------Cce
Q 008859           80 SDPYVTVVV--PQATVA---RTRVLK--N--SQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG----------AQI  136 (551)
Q Consensus        80 sDpYvtV~l--~~~~v~---rTrvi~--n--s~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g----------~~l  136 (551)
                      ++.||++.|  ++..+.   .|+...  +  ...+.|||...|++.-.    .+.|.|++++....+          ...
T Consensus        29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~  108 (171)
T cd04012          29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE  108 (171)
T ss_pred             ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence            678999876  443322   343221  1  34678999998876432    567999999865432          468


Q ss_pred             eEEEEeecccc
Q 008859          137 IGTAAIPAHTI  147 (551)
Q Consensus       137 IG~v~Ipl~~l  147 (551)
                      ||.+.+++-+.
T Consensus       109 lG~~~~~LFd~  119 (171)
T cd04012         109 LGWVSLPLFDF  119 (171)
T ss_pred             EEEEeEeeEcc
Confidence            88888887553

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=88.07  E-value=2.1  Score=41.05  Aligned_cols=55  Identities=18%  Similarity=0.220  Sum_probs=33.3

Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC----CceeEEEEeeccc
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG----AQIIGTAAIPAHT  146 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g----~~lIG~v~Ipl~~  146 (551)
                      +.+.|.|.-.+.+|.|+|+|.|.+...   ...|.|++++...-.    ...+|-+.+||-+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            456788888889999999999998876   456899998865432    2688888887765

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=85.10  E-value=6  Score=34.83  Aligned_cols=93  Identities=12%  Similarity=0.171  Sum_probs=52.1

Q ss_pred             EEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC--------CCeEEEEEEecCCCCCceeEEEEeecccccc--cce
Q 008859           83 YVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT--GEL  152 (551)
Q Consensus        83 YvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~--------~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~--g~~  152 (551)
                      ||+++.-.-...-|.++. +.+|.+|-+-.+.|...        ...+.+++...-......||.+.|++.++..  ++.
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~   80 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER   80 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence            567776554445677765 78999998877777765        3567888877653336899999999999984  446


Q ss_pred             eeeEEEccCCCCCCCCCCceEEEEeee
Q 008859          153 ISRWYDIIAPSGSPPKPGASIQLELKF  179 (551)
Q Consensus       153 i~~w~~Ll~~~gkp~k~~G~L~lsl~f  179 (551)
                      +.+-..+.+.+|+   .-|.|...++.
T Consensus        81 i~~~~~l~g~~~~---~~g~l~y~~rl  104 (107)
T PF11618_consen   81 IHGSATLVGVSGE---DFGTLEYWIRL  104 (107)
T ss_dssp             EEEEEEE-BSSS----TSEEEEEEEEE
T ss_pred             EEEEEEEeccCCC---eEEEEEEEEEe
Confidence            8888888777777   45888777764

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=81.73  E-value=2.9  Score=40.54  Aligned_cols=53  Identities=23%  Similarity=0.435  Sum_probs=38.6

Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC---CceeEEEEeec
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPA  144 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g---~~lIG~v~Ipl  144 (551)
                      ...+|-|+.-+.+|.|+|++.|.++..   ...|.|+++....-.   ...+|-+.+||
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL  111 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL  111 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence            346888888899999999999998765   567889777643221   24566666665

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=81.70  E-value=11  Score=36.15  Aligned_cols=97  Identities=12%  Similarity=0.105  Sum_probs=52.4

Q ss_pred             cEEEEEE--CCee--eEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC--CceeEEEEeecccccccc
Q 008859           82 PYVTVVV--PQAT--VARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG--AQIIGTAAIPAHTIATGE  151 (551)
Q Consensus        82 pYvtV~l--~~~~--v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g--~~lIG~v~Ipl~~l~~g~  151 (551)
                      .||++.|  ++..  .-+|.....+.++.|||...|++.-.    .+.|.|+||+...-.  ...+|.-  +.+.-....
T Consensus        32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~  109 (178)
T cd08399          32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKH  109 (178)
T ss_pred             EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccc--ccccccccc
Confidence            5677654  3321  12666666678899999988876543    467999999863221  1222221  111111122


Q ss_pred             eeeeEEE--ccCCCCCCCCCCceEEEEeeeecc
Q 008859          152 LISRWYD--IIAPSGSPPKPGASIQLELKFTPC  182 (551)
Q Consensus       152 ~i~~w~~--Ll~~~gkp~k~~G~L~lsl~f~p~  182 (551)
                      ..-+|..  |.+..+.-  ..|...|.+.-.|.
T Consensus       110 ~~l~wvn~~LFD~~~~L--r~G~~~L~~W~~~~  140 (178)
T cd08399         110 QLLYYVNLLLIDHRFLL--RTGEYVLHMWQISG  140 (178)
T ss_pred             ceEEEEEEEEEcCCCce--ecCCEEEEEecCCC
Confidence            3345544  34544432  35777777766553

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]

Probab=80.36  E-value=11  Score=42.68  Aligned_cols=97  Identities=24%  Similarity=0.313  Sum_probs=62.8

Q ss_pred             chHHHHHHHHHhccc-----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccC
Q 008859          242 TCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLG  316 (551)
Q Consensus       242 ~~~~~l~~aI~~A~~-----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~  316 (551)
                      +.|+.+.+-|++|-.     .|-++-|         |-       +++..+.++|..+|+.|-+|-+|| --..      
T Consensus       352 eSF~~Vv~fl~qAA~DP~VLAIKqTLY---------Rt-------~~dSpIV~ALi~AA~nGKqVtvlV-ELkA------  408 (696)
T COG0855         352 ESFEPVVEFLRQAAADPDVLAIKQTLY---------RT-------SKDSPIVRALIDAAENGKQVTVLV-ELKA------  408 (696)
T ss_pred             hhhHHHHHHHHHhhcCCCeEEEEEEEE---------ec-------CCCCHHHHHHHHHHHcCCeEEEEE-EEhh------
Confidence            467888888888743     4444544         32       246799999999999999999998 2111      


Q ss_pred             CCCCCcccCCcHH----HHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEE
Q 008859          317 VKTPGVMATHDEE----TKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFI  388 (551)
Q Consensus       317 ~~~~g~~~t~~~~----~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafv  388 (551)
                              .-|||    ..+.|+.+||+|++    +--+            +--|.|+++|=-+   .++++.-|+
T Consensus       409 --------RFDEE~NI~WAk~LE~AGvhVvy----G~~g------------lKtHAKm~lVvRr---E~~~lrrY~  457 (696)
T COG0855         409 --------RFDEEANIHWAKRLERAGVHVVY----GVVG------------LKTHAKMLLVVRR---EGGKLRRYV  457 (696)
T ss_pred             --------hcChhhhhHHHHHHHhCCcEEEe----cccc------------eeeeeeEEEEEEe---cCCcEEEEE
Confidence                    11333    45667899999984    1111            2339999988554   223455554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	551
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-18
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-16
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-16
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	6e-16
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-15
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	3e-15
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	8e-14
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-12
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	4e-12
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-11
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	9e-07
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	4e-11
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	5e-11
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	7e-11
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-10
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-10
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-10
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	3e-10
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	3e-10
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	4e-10
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	4e-10
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-09
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-09
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-07
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-09
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	4e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	5e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	5e-09
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-08
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-08
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	2e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-08
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-08
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	3e-08
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-08
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-08
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-07
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-07
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-07
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-07
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-07
1v0w_A	506	Phospholipase D; hydrolase, substrate SOAK, dibuty	7e-07
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	4e-05

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 79  TSDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQ 135
           T DPYV + +     +  RTR   N   PVWNE F   L     N LEI + D +    +
Sbjct: 26  TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCD 183
            +GTA     ++  GE     +               + LE+      
Sbjct: 86  TLGTATFTVSSMKVGEKKEVPFIF--------NQVTEMVLEMSLEVAS 125

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 22/170 (12%), Positives = 47/170 (27%), Gaps = 43/170 (25%)

Query: 15  LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRK 74
            +G L +KI  A  L                                         +  +
Sbjct: 4   FNGLLKIKICEAVSLKPTAWSLRDA-------------------------------VGPR 32

Query: 75  SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA 134
            +    DPY+ + V  + + +T   + +  P W++ F   +      +E+ V  D   G 
Sbjct: 33  PQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDV-CNGRKIELAVFHDAPIGY 91

Query: 135 -QIIGTAAIPAHTIATGEL--ISRWYDIIAPSGSPPKPGASIQLELKFTP 181
              +    I    +          W D+        +P   + + +  + 
Sbjct: 92  DDFVANCTIQFEELLQNGSRHFEDWIDL--------EPEGKVYVIIDLSG 133

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 46/179 (25%)

Query: 7   SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVR 66
           S     +  +G L ++I  A  L        H                            
Sbjct: 19  SMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--------------------------- 51

Query: 67  HTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQV 126
                + K      DPY+TV V Q  V +T   + + +P +NE F   +     +LE+ V
Sbjct: 52  -----LFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANV-TDGGHLELAV 105

Query: 127 KDDDVFGA-QIIGTAAIPAHTIATG----ELISRWYDIIAPSGSPPKPGASIQLELKFT 180
             +   G    +    +    +       +    W D+        +P   + + +  T
Sbjct: 106 FHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL--------EPEGKVFVVITLT 156

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 73.5 bits (181), Expect = 6e-16
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 48/168 (28%)

Query: 16  HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKS 75
           HG L++ ++ A+ L + D ++                                       
Sbjct: 9   HGTLEVVLVSAKGLEDADFLN--------------------------------------- 29

Query: 76  KIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA- 134
                DPYV +                  P WNE F   ++   + L+ ++ D DV    
Sbjct: 30  ---NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTED 86

Query: 135 QIIGTAAIPAHTIAT-GELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
             +G A IP   +   G +    Y+++       +    I + L F P
Sbjct: 87  DAVGEATIPLEPVFVEGSIPPTAYNVVKDE----EYKGEIWVALSFKP 130

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL----AHPLSNLEIQVKDDDVFGA 134
             DP V+V+  +    +T+ + N   PVWNE     L        S+L I VKD +  G 
Sbjct: 26  KPDPIVSVIF-KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84

Query: 135 -QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP-GASIQLELKFTP 181
            ++IGTA +    +   +  S  Y +I+      +  GA+I L + + P
Sbjct: 85  NKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 47/164 (28%)

Query: 17  GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSK 76
           G L +K+++A  L   D                                           
Sbjct: 13  GILQVKVLKAADLLAADFSG---------------------------------------- 32

Query: 77  IITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQ- 135
              SDP+  + +    + +T  +  +  P WN+ F  P+      LE+ V D+D      
Sbjct: 33  --KSDPFCLLELGNDRL-QTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD 89

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
            +G  AIP  +I  G+     Y +          G  I LE+  
Sbjct: 90  FLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKG-VIYLEMDL 130

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 68.2 bits (167), Expect = 8e-14
 Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 55/177 (31%)

Query: 17  GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSK 76
             + +++I    L   D++                                         
Sbjct: 20  RIVRVRVIAGIGLAKKDILG---------------------------------------- 39

Query: 77  IITSDPYVTVVV-----PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV 131
              SDPYV V +        T  +T+ +K S  P WNE     +      L  +V D++ 
Sbjct: 40  --ASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENR 97

Query: 132 FGAQ-IIGTAAIPAHTIATGE------LISRWYDIIAPSGSPPKPGASIQLELKFTP 181
                 +G   +P + + T           + + +   S      G  ++L++ + P
Sbjct: 98  LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKG-YLRLKMTYLP 153

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 65.7 bits (160), Expect = 1e-12
 Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 55/177 (31%)

Query: 17  GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSK 76
             + +K+I    L   D++                                         
Sbjct: 8   RVVRVKVIAGIGLAKKDILG---------------------------------------- 27

Query: 77  IITSDPYVTVVV-----PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDV 131
              SDPYV V +        T  +T+ +K S  P WNE     +      +  +V D++ 
Sbjct: 28  --ASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENR 85

Query: 132 FGA-QIIGTAAIPAHTIATGE------LISRWYDIIAPSGSPPKPGASIQLELKFTP 181
                 +G   +P + + T           + + +   S      G  ++L++ + P
Sbjct: 86  LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKG-YLRLKMTYLP 141

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 74  KSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG 133
           K       PYV V V   +  +T    N+  P W +   + +  P+S L  +V       
Sbjct: 51  KKNWFGPSPYVEVTVDGQSK-KTEKCNNTNSPKWKQPLTVIV-TPVSKLHFRVWSHQTLK 108

Query: 134 A-QIIGTAAIP 143
           +  ++GTAA+ 
Sbjct: 109 SDVLLGTAALD 119

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 79  TSDPYVTV-VVPQ-ATVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG 133
           TSDPYV V ++P       T+V + +  PV+NE F   + +       L + V D D F 
Sbjct: 39  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS 98

Query: 134 AQ-IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
              IIG   +P +T+  G +   W D+ +      +    I   L++ P
Sbjct: 99  KHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP 147

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDV 131
            SDPYV + ++         +T + KN+  P +NE F+  +         + + V D D 
Sbjct: 170 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 229

Query: 132 FGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
            G    IG   +  +  +TG  +  W D++A    P
Sbjct: 230 IGKNDAIGKVFVGYN--STGAELRHWSDMLANPRRP 263

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 80  SDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDDVF 132
           SDPYV + ++P    +   +T V K +  PV+++ F+  ++ P +    L++ VK+   F
Sbjct: 44  SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103

Query: 133 GA---QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
            +    ++G   +   +    +  ++WYD+   SG  
Sbjct: 104 LSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGPS 140

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 64.2 bits (155), Expect = 5e-11
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 79  TSDPYVTVVVPQATV--ARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQ 135
           T DPYV + +        RTR   N   PVWNE F   L     N LEI + D +    +
Sbjct: 41  TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 100

Query: 136 IIGTAAIPAHTIATGELISRWYD 158
            +GTA     ++  GE     + 
Sbjct: 101 TLGTATFTVSSMKVGEKKEVPFI 123

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 58.9 bits (143), Expect = 7e-11
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 79  TSDPYVTVVV-PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG---- 133
             DP+  +VV        T  +KN+ +P WN+H+++ +     ++ I V +         
Sbjct: 25  LPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV-GKTDSITISVWNHKKIHKKQG 83

Query: 134 AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGAS---IQLELKF 179
           A  +G   + ++ I+  +  + +  +     +P    A    I + L+ 
Sbjct: 84  AGFLGCVRLLSNAISRLKD-TGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 79  TSDPYVTVVV---PQATVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVF 132
             D YV   V     +  A+T + K      W E   +PLA    P + L + ++  D F
Sbjct: 43  GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF 102

Query: 133 GA-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
               + G   +     +     ++W ++    
Sbjct: 103 SRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 80  SDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGT 139
            + YVT+ V Q   + T  ++ SQ P W + F   +      L ++V +  +    ++GT
Sbjct: 23  FNTYVTLKV-QNVKSTTIAVRGSQ-PSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGT 80

Query: 140 AAIPAHTI--ATGELISRWY 157
             IP  TI  +  E    W 
Sbjct: 81  VWIPLRTIRQSNEEGPGEWL 100

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 79  TSDPYVTV-VVPQATVA----RTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDD 130
                + V V+P +       RTR L  S   V+NE F + +++P L    L + V   D
Sbjct: 63  DQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTD 122

Query: 131 VFGA-QIIGTAAIP-AHTIATGELISRWYDIIA 161
                + +G A I  A    +GE  +RWY++++
Sbjct: 123 RSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 79  TSDPYVTV-VVP-QATVARTRVLKNSQEPVWNEHF--NIPLAHPLS-NLEIQVKDDDVFG 133
           TSDPYV V ++P +     T+V + +  PV+NE F   +P +      L + V D D F 
Sbjct: 54  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDIIA 161
              IIG   +P +T+  G +   W D+ +
Sbjct: 114 KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 18/115 (15%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQI-- 136
           +SDPYVTV V +    RT+ +  +  PVW E+F+    +    ++++V D+D        
Sbjct: 37  SSDPYVTVQVGKTKK-RTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVK 95

Query: 137 ----------IGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGA---SIQLELK 178
                     +G   I   T++       WY++   +      GA    I +E+K
Sbjct: 96  QRFKRESDDFLGQTIIEVRTLSGEM--DVWYNLDKRTDKSAVSGAIRLHISVEIK 148

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDDV 131
            S+PYV   ++P  +     +T + +++  P+++E     +    L+   L+  V     
Sbjct: 44  RSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGR 103

Query: 132 FGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169
           FG    +G A I   +    + +     +     +  + 
Sbjct: 104 FGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 79  TSDPYVTV-VVP-QATVARTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDDVFG 133
           TSDPYV V ++P +     T+V + +  PV+NE F   + +  L    L + V D D F 
Sbjct: 62  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 121

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDIIAP 162
              IIG   +P +T+  G +   W D+ + 
Sbjct: 122 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 50/160 (31%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
           +       L + +  A+ L  MD                                     
Sbjct: 25  QAHIDREVLIVVVRDAKNLVPMDPNG---------------------------------- 50

Query: 71  IIRKSKIITSDPYVTV-VVPQ---ATVARTRVLKNSQEPVWNEHFNIPLAHPLSN--LEI 124
                    SDPYV + ++P     +  +T+ +K S  P WNE F   L     +  L +
Sbjct: 51  --------LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSV 102

Query: 125 QVKDDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
           ++ D D+      +G+ +     +     +  W+ +++  
Sbjct: 103 EIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 141

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 79  TSDPYVTVVV--PQATVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG 133
            SDPYV + +   +    +T+V + +  P++NE F   +         L   V D D F 
Sbjct: 40  FSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS 99

Query: 134 A-QIIGTAAIPA--HTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
              +IG   +               W DI+         G  +   L + P
Sbjct: 100 RHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLG-ELNFSLCYLP 149

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDV 131
            SDPYV   ++ +       +T + KN+  P +NE     +A        L I V D D 
Sbjct: 172 FSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC 231

Query: 132 FGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
            G  ++IG   +     A       W +++A    P
Sbjct: 232 IGHNEVIGVCRVGPEA-ADPHGREHWAEMLANPRKP 266

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 79  TSDPYVTV-VVP---QATVARTRVLKNSQEPVWNEHF---NIPLAHPLSN--LEIQVKDD 129
             +PYV +  +P        RT+ +K + EP WN+ F    +          LEI + D 
Sbjct: 41  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE-FRERMLEITLWDQ 99

Query: 130 DVFGAQ---IIGTAAIPAHTIATGELISRWYDIIAPSGSPP 167
                +    +G   I   T    +    WY +      P 
Sbjct: 100 ARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSGPS 139

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 79  TSDPYVTV-VVPQ-ATVARTRVLKNSQEPVWNEHF---NIPLAHPLS-NLEIQVKDDDVF 132
           TSDP+V + ++P       T+V + +  P WNE F     P    +   L +QV D D F
Sbjct: 46  TSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF 105

Query: 133 GA-QIIGTAAIPAHTIATGELISRWYDIIAPSGS 165
                IG  +IP + +   ++ + W D+     S
Sbjct: 106 SRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPS 139

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 79  TSDPYVTV-VVP---QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSN--LEIQVKDDD 130
             +PYV   ++P   + +  +T++ + ++ P +NE           L    L++ V   +
Sbjct: 39  DPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
                  +G   +P       +   +WY + A +
Sbjct: 99  SLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT 132

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 79  TSDPYVTV-VVP-QATVARTRVLKNSQEPVWNEHFNIPLAHP-LSN--LEIQVKDDDVFG 133
            S+PYV + ++P Q    +T V + +Q+PV+ E +   +         L + V D D F 
Sbjct: 53  HSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS 112

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
              +IG  ++P   +   +    W  +I   
Sbjct: 113 RHCVIGKVSVPLCEVDLVKGGHWWKALIPSG 143

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 18/105 (17%)

Query: 79  TSDPYVTV-------------VVPQATVARTRVLKNSQEPVWNEHF---NIPLAHPLS-N 121
            SDP+V V                     RT+ ++ S  P WN+     +I +   +   
Sbjct: 38  YSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT 97

Query: 122 LEIQVKDDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGS 165
           LE+ V D D F +   +G   I   + +  +   RWY +   + S
Sbjct: 98  LEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTES 142

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPV-WNEHFNIPLAHPLSN---LEIQVKD-DDVFG 133
            +D    V   +     +RVL+N ++   ++E F  P+A  +     LEIQ+ +   VF 
Sbjct: 36  RADRIAKVTF-RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFS 94

Query: 134 AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
            ++IGT  +    +     +     +I  + +      S+ +E+++  
Sbjct: 95  NKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAI--IKTSLSMEVRYQA 140

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 81  DPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTA 140
           + YVT+ V Q   + T  ++ SQ P W + F   +      L ++V +  +    ++GT 
Sbjct: 33  NTYVTLKV-QNVESTTIAVRGSQ-PSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTV 90

Query: 141 AIPAHTI--ATGELISRWYDI 159
            IP  TI  +  E    W  +
Sbjct: 91  WIPLRTIRQSNEEGPGEWLTL 111

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNE--HFNIPLAHPLSN--LEIQVKDDD 130
            SDPYV V +          +T V K +   V+NE   F+IP    L    +E  V D +
Sbjct: 50  LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES-LEEISVEFLVLDSE 108

Query: 131 VFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP 169
                ++IG   + A   A G     W +I      P + 
Sbjct: 109 RGSRNEVIGRLVLGAT--AEGSGGGHWKEICD---FPRRQ 143

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 79  TSDPYVTV-VVP-QATVARTRVLKNSQEPVWNEHF---NIPLAHPLSN--LEIQVKDDDV 131
           TSDPY+ + ++P +    +TRVL+ + +P ++E F    IP    +    L   +   D 
Sbjct: 43  TSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ-IQELALHFTILSFDR 101

Query: 132 FGA-QIIGTAAIPAHTI-ATGELISRWYDIIAPSGS 165
           F    IIG   IP   I  +   +    +II+   S
Sbjct: 102 FSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPSS 137

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHFNIPLAHPLSN--LEIQVKDDDVF 132
           T DPYV + ++P+ +     +T+ + + ++P ++EHF  P+        L + V +    
Sbjct: 46  TCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQ 105

Query: 133 GA--QIIGTAAIPAHTIAT-GELISRWYD 158
                +IG  +    ++ T  + IS WY 
Sbjct: 106 SRQSGLIGCMSFGVKSLLTPDKEISGWYY 134

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEHF---NIPLAHPLS-NLEIQVKDDD 130
            +DPYV + ++P A+ +   RT+ L+N++ PVWNE      I         L I V D+D
Sbjct: 49  LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED 108

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYD 158
            FG  + IG        +   +  +    
Sbjct: 109 KFGHNEFIGETRFSLKKLKANQRKNFNIC 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNE--HFNIPLAHPLSN--LEIQVKDDD 130
           TSDPYV V ++ +       +T   K +  P++NE   F+IP    L    + I V D D
Sbjct: 36  TSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK-LRETTIIITVMDKD 94

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
                 +IG   +     +    +  W D+IA    P
Sbjct: 95  KLSRNDVIGKIYLSWK--SGPGEVKHWKDMIARPRQP 129

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 79  TSDPYVTV-VVP---QATVARTRVLKNSQEPVWNEHF---NIPLAHPLSN--LEIQVKDD 129
             +PYV +  +P        RT+ +K + EP WN+ F    +          LEI + D 
Sbjct: 38  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE-FRERMLEITLWDQ 96

Query: 130 DVFGAQ---IIGTAAIPAHTIATGELISRWYD 158
                +    +G   I   T    +    WY 
Sbjct: 97  ARVREEESEFLGEILIELETALLDD-EPHWYK 127

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 47/171 (27%)

Query: 11  KVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSK 70
            +    G L++++IRAR L                                         
Sbjct: 24  GMEDKKGQLEVEVIRARSLTQKPGSKS--------------------------------- 50

Query: 71  IIRKSKIITSDPYVTV-VVP---QATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQV 126
                   T  PYV V ++         +TR+ + + +P++ +      +     L++ V
Sbjct: 51  --------TPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIV 102

Query: 127 KDD-DVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL 175
             D         +G A I    +    ++  WY +  PS       A +  
Sbjct: 103 WGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLAPLTR 153

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 12/97 (12%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNE--HFNIPLAHPLSN--LEIQVKDDD 130
            SDPYV + ++         +T + KN+  P +NE   F +P    +    + + V D D
Sbjct: 45  LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ-IQKVQVVVTVLDYD 103

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
             G    IG   +  +  +TG  +  W D++A    P
Sbjct: 104 KIGKNDAIGKVFVGYN--STGAELRHWSDMLANPRRP 138

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 79  TSDPYVTV-VVPQATVA---RTRVLKNSQEPVWNEH--FNIPLAHPLSN--LEIQVKDDD 130
            SDP+V + + P        +T++ K +  P +NE   ++I  +  L+   L+I V D D
Sbjct: 57  YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD-LAKKSLDISVWDYD 115

Query: 131 VFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
           +  +   IG   +     A GE +  WY+ +      
Sbjct: 116 IGKSNDYIGGCQLGIS--AKGERLKHWYECLKNKDKK 150

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Length = 506

 Score = 50.9 bits (121), Expect = 7e-07
 Identities = 33/222 (14%), Positives = 59/222 (26%), Gaps = 70/222 (31%)

Query: 245 EDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLT---LGELLKYKSEEG--V 299
             +   I  A   + I   + F                       +   LK  + +G  +
Sbjct: 69  AKMTENIGNATRTVDISTLAPFP---------------NGAFQDAIVAGLKESAAKGNKL 113

Query: 300 RVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQI 359
           +V +LV                + + + +E       ++ N  L     ++  + F    
Sbjct: 114 KVRILVGAA------PVYHMNVIPSKYRDELTAKLGKAAENITLNVASMTTSKTAFSW-- 165

Query: 360 VGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHN 419
                 +H K ++VD Q        +A  GGI+     Y    H                
Sbjct: 166 ------NHSKILVVDGQ--------SALTGGINSWKDDYLDTTH---------------- 195

Query: 420 PTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461
                       P  D+   L GPAA       +  W    +
Sbjct: 196 ------------PVSDVDLALTGPAAGSAGRYLDTLWTWTCQ 225

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 10/142 (7%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
            + I  +     +     R             C   C   K         +         
Sbjct: 340 RQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQ-DCCPRQRGLAHLVV 398

Query: 70  KIIRKSKI-----ITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPL--AHPLSNL 122
              R   +       +D Y+ V        RT V+ N+  P W +  +           L
Sbjct: 399 SNFRAEHLWGDYTTATDAYLKVFFGGQEF-RTGVVWNNNNPRWTDKMDFENVLLSTGGPL 457

Query: 123 EIQVKDDDVFGAQ-IIGTAAIP 143
            +QV D D      ++G+    
Sbjct: 458 RVQVWDADYGWDDDLLGSCDRS 479

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 45.0 bits (105), Expect = 4e-05
 Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 10/147 (6%)

Query: 80  SDPYVTVVVPQATVARTRVLK---NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG--- 133
              Y  + +     ART       +     W EHF       +  L + +  D       
Sbjct: 27  KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKK 86

Query: 134 --AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQG 191
             A  +G   +P  T+A      +WY +  P+GS       +           +    +G
Sbjct: 87  DKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS--GGSGGMGSGGGGGSGGGSGGKGKG 144

Query: 192 IAGDPEHKGVRNAYFPLRKGSHVRLYQ 218
                  K        L    +    +
Sbjct: 145 GCPAVRLKARYQTMSILPMELYKEFAE 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	551
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.88
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.84
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.83
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.83
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.82
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.82
1v0w_A	506	Phospholipase D; hydrolase, substrate SOAK, dibuty	99.82
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.81
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.8
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.8
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.78
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.77
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.73
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.72
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.72
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.71
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.71
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.71
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.7
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.7
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.7
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.7
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.7
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.69
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.68
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.68
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.67
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.67
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.67
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.66
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.66
4ggj_A	196	Mitochondrial cardiolipin hydrolase; piRNA pathway	99.66
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.66
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.66
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.65
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.64
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.61
1byr_A	155	Protein (endonuclease); phosphodiesterase,; 2.00A	99.59
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.58
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.57
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.54
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.54
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.53
4gel_A	220	Mitochondrial cardiolipin hydrolase; piRNA, phosph	99.53
3hsi_A	458	Phosphatidylserine synthase; CDP- diacylglycerol--	99.52
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.5
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.49
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.47
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.43
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.43
1xdp_A	687	Polyphosphate kinase; PPK, PPK complex with AMPPNP	99.23
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.19
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.17
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.15
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.14
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.05
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.98
2o8r_A	705	Polyphosphate kinase; structural genomics, protein	98.9
3hsi_A	458	Phosphatidylserine synthase; CDP- diacylglycerol--	98.69
1v0w_A	506	Phospholipase D; hydrolase, substrate SOAK, dibuty	98.43
2o8r_A	705	Polyphosphate kinase; structural genomics, protein	97.13
1xdp_A	687	Polyphosphate kinase; PPK, PPK complex with AMPPNP	96.79
2f5t_X	233	Archaeal transcriptional regulator TRMB; sugar-bin	93.26
3qph_A	342	TRMB, A global transcription regulator; transcript	92.17
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	88.35
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	83.54

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.88  E-value=2e-22  Score=187.57  Aligned_cols=131  Identities=21%  Similarity=0.364  Sum_probs=108.0

Q ss_pred             CceeEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE
Q 008859            9 KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV   88 (551)
Q Consensus         9 ~~~~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l   88 (551)
                      +..++.++|.|.|+|++|++|+++|..++.+  +|.+                              ...++||||+|.+
T Consensus        21 ~~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~~------------------------------~~g~sDPYv~v~l   68 (157)
T 2fk9_A           21 SSGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFKK------------------------------GHQLLDPYLTVSV   68 (157)
T ss_dssp             ---CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSSS------------------------------SCCCCCEEEEEEE
T ss_pred             cchhccCccEEEEEEEEEECCCCcccccccc--cccc------------------------------CCCCCCeEEEEEE
Confidence            3456689999999999999999988543311  2221                              0123899999999


Q ss_pred             CCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeeccccccc----ceeeeEEEccCCC
Q 008859           89 PQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG----ELISRWYDIIAPS  163 (551)
Q Consensus        89 ~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g----~~i~~w~~Ll~~~  163 (551)
                      ++++++||++++++.||+|||+|.|.+.. ...|+|+|||.|.++ +++||.+.||++++..+    +..+.||+|.   
T Consensus        69 ~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~---  144 (157)
T 2fk9_A           69 DQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE---  144 (157)
T ss_dssp             TTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB---
T ss_pred             CCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC---
Confidence            99988999999999999999999999864 568999999999999 89999999999999866    7789999992   


Q ss_pred             CCCCCCCceEEEEeeee
Q 008859          164 GSPPKPGASIQLELKFT  180 (551)
Q Consensus       164 gkp~k~~G~L~lsl~f~  180 (551)
                           ..|+|+|+++|.
T Consensus       145 -----~~G~i~l~l~~~  156 (157)
T 2fk9_A          145 -----PEGKVFVVITLT  156 (157)
T ss_dssp             -----SSCEEEEEEEEC
T ss_pred             -----CCcEEEEEEEEE
Confidence                 269999999884

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.84  E-value=1.7e-20  Score=169.42  Aligned_cols=130  Identities=18%  Similarity=0.392  Sum_probs=106.5

Q ss_pred             EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee
Q 008859           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT   92 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~   92 (551)
                      ..++|.|.|+|++|++|+++|.++++.   +.+                    +        .+...+||||+|.+++..
T Consensus         2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~g~--------------------~--------~~~~~~DPyv~v~l~~~~   50 (136)
T 1gmi_A            2 VVFNGLLKIKICEAVSLKPTAWSLRDA---VGP--------------------R--------PQTFLLDPYIALNVDDSR   50 (136)
T ss_dssp             CCEEEEEEEEEEEEESCCCCHHHHCC----CCS--------------------S--------CCCCCCCEEEEEEETTEE
T ss_pred             cccceEEEEEEEeCcCCCCcccccccc---ccc--------------------c--------cCCcCcCcEEEEEECCeE
Confidence            358999999999999999988544210   100                    0        011238999999999988


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeeccccccc--ceeeeEEEccCCCCCCCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPKP  169 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g--~~i~~w~~Ll~~~gkp~k~  169 (551)
                      ++||++++++.||+|||+|.|.+... ..|.|+|||.|.++ +++||.+.||++++..+  ...+.|++|.        +
T Consensus        51 ~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~  121 (136)
T 1gmi_A           51 IGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--------P  121 (136)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------S
T ss_pred             eeeeeEECCCcCCccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--------C
Confidence            89999999999999999999998765 78999999999998 89999999999999864  3568999982        3


Q ss_pred             CceEEEEeeeecc
Q 008859          170 GASIQLELKFTPC  182 (551)
Q Consensus       170 ~G~L~lsl~f~p~  182 (551)
                      .|+|+|+++|.+.
T Consensus       122 ~G~i~l~l~~~~~  134 (136)
T 1gmi_A          122 EGKVYVIIDLSGS  134 (136)
T ss_dssp             SCEEEEEEEEEEE
T ss_pred             CeEEEEEEEEEec
Confidence            6999999999764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=4.7e-20  Score=165.66  Aligned_cols=129  Identities=24%  Similarity=0.358  Sum_probs=110.5

Q ss_pred             CCCceeEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEE
Q 008859            7 SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTV   86 (551)
Q Consensus         7 ~~~~~~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV   86 (551)
                      +++....--.|.|.|+|++|++|+++|..+.                                          +||||+|
T Consensus         3 ~~s~~~~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v   40 (133)
T 2ep6_A            3 SGSSGDVKDVGILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLL   40 (133)
T ss_dssp             SCCCCSCCCSEEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEE
T ss_pred             cccccccCCceEEEEEEEeeECCCCCCCCCC------------------------------------------cCeEEEE
Confidence            3444444567999999999999999886553                                          8999999


Q ss_pred             EECCeeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859           87 VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (551)
Q Consensus        87 ~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk  165 (551)
                      .+.+.+ .||++++++.||.|||+|.|.+......|.|+|||.+.++ +++||.+.|++.++..|.  ..||+|.+..++
T Consensus        41 ~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~  117 (133)
T 2ep6_A           41 ELGNDR-LQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLE  117 (133)
T ss_dssp             EETTEE-EECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTT
T ss_pred             EECCEE-EEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCC
Confidence            999876 5999999999999999999999987788999999999997 899999999999998765  589999766544


Q ss_pred             CCCCCceEEEEeeeec
Q 008859          166 PPKPGASIQLELKFTP  181 (551)
Q Consensus       166 p~k~~G~L~lsl~f~p  181 (551)
                      . +..|+|+|+++|..
T Consensus       118 ~-~~~G~i~l~i~~~~  132 (133)
T 2ep6_A          118 Q-AFKGVIYLEMDLIY  132 (133)
T ss_dssp             S-CCSSEEEEEEEEEE
T ss_pred             C-ccceEEEEEEEEEe
Confidence            3 46799999999853

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=8.8e-20  Score=164.99  Aligned_cols=124  Identities=28%  Similarity=0.481  Sum_probs=108.2

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~   94 (551)
                      ..|.|.|+|++|++|+++|. +.                                          +||||+|.+.+.+ .
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------------------~dpyv~v~~~~~~-~   40 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GK------------------------------------------PDPIVSVIFKDEK-K   40 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SC------------------------------------------CCEEEEEECSSCE-E
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CC------------------------------------------CCeEEEEEECCEe-E
Confidence            46899999999999998876 43                                          8999999999876 7


Q ss_pred             EeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEE---ccCCCCCC
Q 008859           95 RTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYD---IIAPSGSP  166 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~---Ll~~~gkp  166 (551)
                      ||++++++.||+|||+|.|.+..+    ...|.|+|||.+.++ +++||.+.|++.++..+...+.|++   |.+..++.
T Consensus        41 kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~  120 (140)
T 2dmh_A           41 KTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQD  120 (140)
T ss_dssp             ECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCE
T ss_pred             EeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCC
Confidence            999999999999999999998753    567999999999998 7899999999999998888899988   76665543


Q ss_pred             CCCCceEEEEeeeeccCC
Q 008859          167 PKPGASIQLELKFTPCDK  184 (551)
Q Consensus       167 ~k~~G~L~lsl~f~p~~~  184 (551)
                        ..|+|+|+++|.|...
T Consensus       121 --~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A          121 --TGATIDLVIGYDPPSG  136 (140)
T ss_dssp             --EEEEEEEEEEECCCBS
T ss_pred             --CCCEEEEEEEEECCCC
Confidence              4599999999998654

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.82  E-value=1e-19  Score=167.22  Aligned_cols=124  Identities=21%  Similarity=0.367  Sum_probs=101.5

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----   90 (551)
                      -.|.|.|+|++|++|+++|..+.                                          +||||+|.+..    
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~   55 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMNG   55 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------------------------------------------------CCEEEEEEEEETTTE
T ss_pred             CccEEEEEEEEeeCCCCCCCCCC------------------------------------------CCcEEEEEEECCCCc
Confidence            35789999999999998886553                                          89999999964    


Q ss_pred             -eeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeeccccccccee------eeEEEccCC
Q 008859           91 -ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI------SRWYDIIAP  162 (551)
Q Consensus        91 -~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i------~~w~~Ll~~  162 (551)
                       ....||++++++.||+|||+|.|.+......|.|+|||.+.++ +++||.+.|++.++..+...      ..||+|...
T Consensus        56 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~  135 (153)
T 3b7y_A           56 VLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPR  135 (153)
T ss_dssp             EEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCS
T ss_pred             cceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccc
Confidence             3568999999999999999999999888788999999999998 89999999999999866532      589999654


Q ss_pred             CCCCCCCCceEEEEeeeec
Q 008859          163 SGSPPKPGASIQLELKFTP  181 (551)
Q Consensus       163 ~gkp~k~~G~L~lsl~f~p  181 (551)
                      .++ .+..|+|+|+++|.|
T Consensus       136 ~~~-~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A          136 SHK-SRVKGYLRLKMTYLP  153 (153)
T ss_dssp             STT-CCCCSEEEEEEEECC
T ss_pred             cCC-CCcceEEEEEEEEeC
Confidence            433 356799999999986

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.82  E-value=3.6e-20  Score=166.69  Aligned_cols=124  Identities=24%  Similarity=0.497  Sum_probs=108.6

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeE
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVA   94 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~   94 (551)
                      ..|.|.|+|++|++|+++|..+.                                          +||||+|.+.+.. .
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-~   44 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD-Q   44 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-E
T ss_pred             CcEEEEEEEEeccCCCCcccCCC------------------------------------------cCceEEEEECCcc-c
Confidence            57999999999999999886553                                          8999999998876 5


Q ss_pred             EeeecC-CCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccc-cccceeeeEEEccCCCCCCCCCCc
Q 008859           95 RTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTI-ATGELISRWYDIIAPSGSPPKPGA  171 (551)
Q Consensus        95 rTrvi~-ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l-~~g~~i~~w~~Ll~~~gkp~k~~G  171 (551)
                      ||++++ ++.||+|||+|.|.+......|.|+|||.+.++ +++||.+.|++.++ ..++....||+|. ..+   +..|
T Consensus        45 kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~~~G  120 (136)
T 1wfj_A           45 KSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---EYKG  120 (136)
T ss_dssp             ECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---EEEE
T ss_pred             eeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---ccCE
Confidence            999998 899999999999999987788999999999998 89999999999999 4566778999996 322   3569


Q ss_pred             eEEEEeeeeccCCC
Q 008859          172 SIQLELKFTPCDKN  185 (551)
Q Consensus       172 ~L~lsl~f~p~~~~  185 (551)
                      +|+|+++|.|...+
T Consensus       121 ~i~l~l~~~p~~~~  134 (136)
T 1wfj_A          121 EIWVALSFKPSGPS  134 (136)
T ss_dssp             EEEEEEEEEECCSC
T ss_pred             EEEEEEEEEeCCCC
Confidence            99999999997553

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*

Probab=99.82  E-value=5.4e-21  Score=209.21  Aligned_cols=159  Identities=18%  Similarity=0.175  Sum_probs=110.9

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcC--CeEEEEEeCCCCccCccCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGVK  318 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~G--V~V~iLvwD~~~s~~~~~~~  318 (551)
                      +++|++|+++|++||++|+|++|++      ++++.      .+..|.++|++||+||  |+||||+ |+.++....   
T Consensus        65 ~~~~~~l~~~I~~Ak~~I~i~~y~~------~~~d~------~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~---  128 (506)
T 1v0w_A           65 KRLLAKMTENIGNATRTVDISTLAP------FPNGA------FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN---  128 (506)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEEESS------CCCHH------HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC---
T ss_pred             HHHHHHHHHHHHHhccEEEEEEeec------cCCCh------HHHHHHHHHHHHHhCCCCcEEEEEE-eCccccccc---
Confidence            5789999999999999999999962      12222      2479999999999999  9999997 665433210   


Q ss_pred             CCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecccccc
Q 008859          319 TPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRY  398 (551)
Q Consensus       319 ~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~  398 (551)
                            .......+.|+..|+++.  +..+.....+ .. ....+.+||||++|||++        +||+||+||++++|
T Consensus       129 ------~~~~~~~~~L~~~g~~~~--~~~~~~~~~~-~~-~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~y  190 (506)
T 1v0w_A          129 ------VIPSKYRDELTAKLGKAA--ENITLNVASM-TT-SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDDY  190 (506)
T ss_dssp             ------CHHHHHHHHHHHHHGGGG--GGEEEEEEEE-CS-BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHHH
T ss_pred             ------cCCHHHHHHHHhccccee--ecCccccccc-cc-cCCccccceeeEEEECCc--------EEEeeccccCcccc
Confidence                  012344555555444321  0001000000 00 001234999999999998        99999999987677


Q ss_pred             CCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcC
Q 008859          399 DTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK  461 (551)
Q Consensus       399 Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~  461 (551)
                      .+.                            ..+|||+|++|+||+|.++...|.++|+....
T Consensus       191 ~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~  225 (506)
T 1v0w_A          191 LDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQ  225 (506)
T ss_dssp             TSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred             ccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhcc
Confidence            530                            14899999999999999999999999997653

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.81  E-value=8.4e-19  Score=160.17  Aligned_cols=121  Identities=23%  Similarity=0.464  Sum_probs=104.2

Q ss_pred             EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeee
Q 008859           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV   93 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v   93 (551)
                      ...|.|.|+|++|++|+++|..+.                                          +||||+|.+++.. 
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~-   50 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGS------------------------------------------SDPYVTVQVGKTK-   50 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEECCEE-
Confidence            467999999999999999887553                                          8999999998765 


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCC-----------C-CceeEEEEeecccccccceeeeEEEccC
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF-----------G-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~-----------g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~  161 (551)
                      .||++++++.||.|||+|.|.+..+...|.|+|||.+.+           + +++||.+.||+.++.  ...+.|++|..
T Consensus        51 ~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~  128 (148)
T 3kwu_A           51 KRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDK  128 (148)
T ss_dssp             EECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBC
T ss_pred             EECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEccc
Confidence            699999999999999999999988888999999999986           5 899999999999993  45689999964


Q ss_pred             CCCCCCCCCceEEEEeeee
Q 008859          162 PSGSPPKPGASIQLELKFT  180 (551)
Q Consensus       162 ~~gkp~k~~G~L~lsl~f~  180 (551)
                      ..++ ....|+|+|+++|.
T Consensus       129 ~~~~-~~~~G~i~l~l~~e  146 (148)
T 3kwu_A          129 RTDK-SAVSGAIRLHISVE  146 (148)
T ss_dssp             SSTT-CCCCCEEEEEEEEE
T ss_pred             CCCC-CCCceEEEEEEEEE
Confidence            4333 34679999999985

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.80  E-value=7.2e-19  Score=165.74  Aligned_cols=124  Identities=21%  Similarity=0.377  Sum_probs=98.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe----
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA----   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~----   91 (551)
                      -|.|.|+|++|++|+++|.++.                                          +||||+|.+.+.    
T Consensus         7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~   44 (176)
T 3m7f_B            7 TRVVRVKVIAGIGLAKKDILGA------------------------------------------SDPYVRVTLYDPMSGI   44 (176)
T ss_dssp             CEEEEEEEEEEESCC---CCCC------------------------------------------CCEEEEEEEEETTTEE
T ss_pred             cEEEEEEEEEeeCCCCcCCCCC------------------------------------------cCcEEEEEEECCCCCc
Confidence            3789999999999999887654                                          899999999641    


Q ss_pred             -eeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeeccccccccee-e-----eEEEccCCC
Q 008859           92 -TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELI-S-----RWYDIIAPS  163 (551)
Q Consensus        92 -~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i-~-----~w~~Ll~~~  163 (551)
                       ...||++++++.||.|||+|.|.+......|.|+|||.+.++ +++||.+.|++.++..+... +     .||+|....
T Consensus        45 ~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~  124 (176)
T 3m7f_B           45 LTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS  124 (176)
T ss_dssp             EEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS
T ss_pred             ccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC
Confidence             567999999999999999999999887778999999999998 89999999999999876433 2     799996544


Q ss_pred             CCCCCCCceEEEEeeeecc
Q 008859          164 GSPPKPGASIQLELKFTPC  182 (551)
Q Consensus       164 gkp~k~~G~L~lsl~f~p~  182 (551)
                      ++ .+..|+|+|+++|.|.
T Consensus       125 ~~-~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B          125 HK-SRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             TT-CCCCSEEEEEEEECC-
T ss_pred             CC-CccCEEEEEEEEEEeC
Confidence            33 3467999999999997

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.80  E-value=5e-19  Score=156.97  Aligned_cols=118  Identities=25%  Similarity=0.422  Sum_probs=99.2

Q ss_pred             eeEEEEEEEEeecCCCCC---CCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 008859           16 HGDLDLKIIRARRLPNMD---MMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--   90 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--   90 (551)
                      +|.|.|+|++|++|++++   ..+                                          .+||||+|.+.+  
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g------------------------------------------~~dpyv~v~~~~~~   39 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLD------------------------------------------TPDPYVELFISTTP   39 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHC------------------------------------------CCCEEEEEECTTST
T ss_pred             CcEEEEEEEeeeCCCCCCccccCC------------------------------------------CCCCEEEEEEccCC
Confidence            589999999999999853   222                                          289999999986  


Q ss_pred             eeeEEeeecCCCCCCeEeeEEEEeecC-CCCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCC
Q 008859           91 ATVARTRVLKNSQEPVWNEHFNIPLAH-PLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP  169 (551)
Q Consensus        91 ~~v~rTrvi~ns~nP~WnE~F~i~vah-~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~  169 (551)
                      ....||++++++.||+|||+|.|.+.. ....|.|+|||.+.+++++||.+.|++.++..|...+.|++|..      ..
T Consensus        40 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~  113 (126)
T 1rlw_A           40 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ------VT  113 (126)
T ss_dssp             TCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT------TE
T ss_pred             CceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC------Cc
Confidence            356899999999999999999999954 45679999999999999999999999999999999999999942      23


Q ss_pred             CceEEEEeeeec
Q 008859          170 GASIQLELKFTP  181 (551)
Q Consensus       170 ~G~L~lsl~f~p  181 (551)
                      .|.|+|+|+-.|
T Consensus       114 ~g~i~~~le~~~  125 (126)
T 1rlw_A          114 EMVLEMSLEVAS  125 (126)
T ss_dssp             EEEEEEEEECCC
T ss_pred             eEEEEEEEEeCC
Confidence            467777776543

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.78  E-value=3.6e-18  Score=153.08  Aligned_cols=120  Identities=19%  Similarity=0.357  Sum_probs=100.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC-eeeEE
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ-ATVAR   95 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~-~~v~r   95 (551)
                      ..|.|+|++|++|+++|..+.                                          +||||+|.+.+ ....|
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDpyv~v~~~~~~~~~k   42 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRL------------------------------------------PDPFAKIVVDGSGQCHS   42 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCC------------------------------------------CCEEEEEEETTTCCEEE
T ss_pred             EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEECCCCceEE
Confidence            468999999999999887654                                          89999999975 56689


Q ss_pred             eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC----CceeEEEEeeccccc-ccceeeeEEEccCCC-CCCCCC
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG----AQIIGTAAIPAHTIA-TGELISRWYDIIAPS-GSPPKP  169 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g----~~lIG~v~Ipl~~l~-~g~~i~~w~~Ll~~~-gkp~k~  169 (551)
                      |++++++.||+|||+|.|.+..+. .|.|+|||.+.++    +++||.+.||++.+. .+.....|++|.... .++.+.
T Consensus        43 T~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~  121 (132)
T 3pyc_A           43 TDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAV  121 (132)
T ss_dssp             CCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCC
T ss_pred             CCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCce
Confidence            999999999999999999998765 5999999999987    699999999999983 344456899996653 233456


Q ss_pred             CceEEEEeee
Q 008859          170 GASIQLELKF  179 (551)
Q Consensus       170 ~G~L~lsl~f  179 (551)
                      .|+|+|+|++
T Consensus       122 ~G~i~v~l~~  131 (132)
T 3pyc_A          122 RGQIVVSLQT  131 (132)
T ss_dssp             CSEEEEEEEE
T ss_pred             eEEEEEEEEc
Confidence            8999999875

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.77  E-value=2.5e-18  Score=162.34  Aligned_cols=126  Identities=18%  Similarity=0.296  Sum_probs=103.5

Q ss_pred             EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeee
Q 008859           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATV   93 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v   93 (551)
                      ...+.|.|+|++|++|++.+.++.                                          +||||+|.+.+ ..
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~------------------------------------------sDPYv~v~~~~-~~   69 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTVDG-QS   69 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEETT-EE
T ss_pred             CCceEEEEEEEEeECCCCcccCCC------------------------------------------CCeEEEEEECC-EE
Confidence            467999999999999994433222                                          89999999998 56


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccc-----eeeeEEEccCCCCCCC
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE-----LISRWYDIIAPSGSPP  167 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~-----~i~~w~~Ll~~~gkp~  167 (551)
                      .||++++++.||+|||+|.|.+. +...|.|+|||.|.++ +++||.+.|++.++..+.     .+..|++|....+ ..
T Consensus        70 ~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~  147 (173)
T 2nq3_A           70 KKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PT  147 (173)
T ss_dssp             EECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TT
T ss_pred             eEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CC
Confidence            89999999999999999999985 4778999999999997 889999999999987532     2467999966532 33


Q ss_pred             CCCceEEEEeeeeccCC
Q 008859          168 KPGASIQLELKFTPCDK  184 (551)
Q Consensus       168 k~~G~L~lsl~f~p~~~  184 (551)
                      +..|+|.|++.|.+...
T Consensus       148 ~~~G~L~v~l~~l~~~~  164 (173)
T 2nq3_A          148 ETIGDLSICLDGLQLES  164 (173)
T ss_dssp             SEEEEEEEEEESEECC-
T ss_pred             cccEEEEEEEeeeecch
Confidence            46799999999998743

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.73  E-value=3.5e-17  Score=147.59  Aligned_cols=109  Identities=17%  Similarity=0.411  Sum_probs=92.4

Q ss_pred             ceeEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC
Q 008859           10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP   89 (551)
Q Consensus        10 ~~~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~   89 (551)
                      ...-+..|.|.|+|++|++|+. +..+.                                          +||||+|.+.
T Consensus        13 ~~~~~~~~~L~V~V~~a~~L~~-~~~g~------------------------------------------~DPyv~v~l~   49 (134)
T 2b3r_A           13 LSVSYRNGTLFIMVMHIKDLVT-EDGAD------------------------------------------PNPYVKTYLL   49 (134)
T ss_dssp             EEEEEETTEEEEEEEEEECCCC-TTSCC------------------------------------------CCEEEEEEEE
T ss_pred             EEEeecCCEEEEEEEEeeCCCC-CCCCC------------------------------------------CCeEEEEEEE
Confidence            3344567999999999999995 44332                                          8999999982


Q ss_pred             ----CeeeEEeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859           90 ----QATVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (551)
Q Consensus        90 ----~~~v~rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll  160 (551)
                          .....||++++++.||+|||+|.|. +...   ...|.|+|||.+.++ +++||.+.|++.++..++..++||+|.
T Consensus        50 ~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  129 (134)
T 2b3r_A           50 PDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT  129 (134)
T ss_dssp             SCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred             cCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence                2456799999999999999999999 7643   468999999999998 899999999999999888999999995


Q ss_pred             C
Q 008859          161 A  161 (551)
Q Consensus       161 ~  161 (551)
                      +
T Consensus       130 ~  130 (134)
T 2b3r_A          130 A  130 (134)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=9.6e-17  Score=161.78  Aligned_cols=126  Identities=29%  Similarity=0.495  Sum_probs=108.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eee
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATV   93 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v   93 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+..  ...
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~   55 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKKK   55 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSS------------------------------------------CCEEEEEEEETCTTSC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCeEEEEEEEcCCCce
Confidence            5899999999999999886553                                          89999999953  346


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCC
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP  169 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~  169 (551)
                      .||++++++.||.|||+|.|.+...   ...|.|+|+|.+.++ +++||.+.|++.++..+...+.|++|....+.....
T Consensus        56 ~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~  135 (284)
T 2r83_A           56 FETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEK  135 (284)
T ss_dssp             EECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCC
T ss_pred             EeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccc
Confidence            7999999999999999999998763   468999999999998 899999999999999898999999997665544456


Q ss_pred             CceEEEEeeeeccC
Q 008859          170 GASIQLELKFTPCD  183 (551)
Q Consensus       170 ~G~L~lsl~f~p~~  183 (551)
                      .|+|.++++|.|..
T Consensus       136 ~G~i~l~l~~~p~~  149 (284)
T 2r83_A          136 LGDICFSLRYVPTA  149 (284)
T ss_dssp             CCEEEEEEEEETTT
T ss_pred             cccEEEEEEecCcC
Confidence            79999999998753

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=3.3e-17  Score=150.62  Aligned_cols=104  Identities=33%  Similarity=0.545  Sum_probs=92.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ceee
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV   93 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~v   93 (551)
                      .+.|.|+|++|++|+++|..+.                                          +||||+|.+.  +...
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~   78 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKKK   78 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCSC
T ss_pred             CCEEEEEEEEeECCCCccCCCC------------------------------------------cCeEEEEEEEcCCCce
Confidence            4899999999999999886543                                          8999999994  3356


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccC
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~  161 (551)
                      .||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.|++.++..|+..+.|++|.+
T Consensus        79 ~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A           79 FETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             EECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             EeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            7999999999999999999998753   468999999999997 8999999999999998989999999954

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.71  E-value=3.3e-17  Score=148.63  Aligned_cols=103  Identities=33%  Similarity=0.547  Sum_probs=91.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ceee
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV   93 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~v   93 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+.  +...
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~~   70 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKKK   70 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBC------------------------------------------CCEEEEEEEESCCSCC
T ss_pred             CCEEEEEEEEecCCCCCCCCCC------------------------------------------cCcEEEEEEECCCCcc
Confidence            4789999999999998876543                                          8999999993  3456


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll  160 (551)
                      .||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.|++.++..+...+.|++|.
T Consensus        71 ~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  141 (143)
T 3f04_A           71 FETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             EECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred             EECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence            8999999999999999999998654   368999999999997 899999999999999999999999984

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=5.1e-17  Score=148.69  Aligned_cols=106  Identities=23%  Similarity=0.398  Sum_probs=92.4

Q ss_pred             EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---
Q 008859           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---   90 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---   90 (551)
                      +..|.|.|+|++|++|+++|..+.                                          +||||+|.+..   
T Consensus        28 ~~~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~   65 (149)
T 1a25_A           28 IDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDPK   65 (149)
T ss_dssp             ESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEESCTT
T ss_pred             ecCCEEEEEEEEeeCCCCCCCCCC------------------------------------------cCeEEEEEEECCCC
Confidence            446899999999999999886553                                          89999999964   


Q ss_pred             -eeeEEeeecCCCCCCeEeeEEEEeecCC--CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCC
Q 008859           91 -ATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (551)
Q Consensus        91 -~~v~rTrvi~ns~nP~WnE~F~i~vah~--~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~  162 (551)
                       ....||++++++.||+|||+|.|.+...  ...|.|+|||.+.++ +++||.+.|++.++..+ ..+.||+|.+.
T Consensus        66 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~  140 (149)
T 1a25_A           66 SESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  140 (149)
T ss_dssp             CSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred             CcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence             4568999999999999999999998764  357999999999997 89999999999999876 58899999653

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.70  E-value=3.9e-17  Score=149.31  Aligned_cols=108  Identities=16%  Similarity=0.304  Sum_probs=91.2

Q ss_pred             eeEEEEEEEEeecCCCCCC-CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 008859           16 HGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----   90 (551)
                      .|.|.|+|++|++|+.+|. .+.                                          +||||+|.+..    
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~l~~~~~~   59 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKR------------------------------------------SNPYVKTYLLPDKSR   59 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTB------------------------------------------CCEEEEEEEETCCSG
T ss_pred             CCEEEEEEEEecCCCCcccCCCC------------------------------------------CCeEEEEEEEcCCcc
Confidence            4899999999999998773 332                                          89999999953    


Q ss_pred             eeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (551)
Q Consensus        91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk  165 (551)
                      ....||++++++.||+|||+|.|.+...   ...|.|+|||.|.++ +++||.+.||+.++..+...+.|++|....+.
T Consensus        60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  138 (148)
T 3fdw_A           60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA  138 (148)
T ss_dssp             GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred             cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence            2368999999999999999999998775   345999999999998 89999999999999988888999999665444

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=2.2e-17  Score=149.45  Aligned_cols=108  Identities=28%  Similarity=0.426  Sum_probs=93.4

Q ss_pred             EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe-
Q 008859           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA-   91 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~-   91 (551)
                      .+..|.|.|+|++|++|+++|..+.                                          +||||+|.+.+. 
T Consensus        14 ~y~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~   51 (142)
T 1rh8_A           14 NYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLLPGR   51 (142)
T ss_dssp             EEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEETTSS
T ss_pred             EEcCCEEEEEEEEecCCCCCCCCCC------------------------------------------CCceEEEEEecCC
Confidence            3567999999999999999886553                                          899999999763 


Q ss_pred             ------------eeEEeeecCCCCCCeEeeEEEEe-ecC---CCCeEEEEEEecCCCC-CceeEEEEeecccccccceee
Q 008859           92 ------------TVARTRVLKNSQEPVWNEHFNIP-LAH---PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS  154 (551)
Q Consensus        92 ------------~v~rTrvi~ns~nP~WnE~F~i~-vah---~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~  154 (551)
                                  ...||++++++.||+|||+|.|. +..   ....|.|+|||.+.++ +++||.+.|++.++..+....
T Consensus        52 ~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~  131 (142)
T 1rh8_A           52 GQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP  131 (142)
T ss_dssp             CCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCC
T ss_pred             CcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCC
Confidence                        24799999999999999999997 543   3568999999999998 899999999999998888889


Q ss_pred             eEEEccCC
Q 008859          155 RWYDIIAP  162 (551)
Q Consensus       155 ~w~~Ll~~  162 (551)
                      .||+|...
T Consensus       132 ~W~~L~~~  139 (142)
T 1rh8_A          132 RWYPLKEQ  139 (142)
T ss_dssp             EEEECBCC
T ss_pred             eEEECCcc
Confidence            99999543

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=9.2e-17  Score=145.50  Aligned_cols=105  Identities=29%  Similarity=0.476  Sum_probs=91.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ceee
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV   93 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~v   93 (551)
                      .+.|.|+|++|++|+++|..+.                                          +||||+|.+.  +...
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~   62 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGT------------------------------------------SDPFVKIYLLPDKKHK   62 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEEEEESCCSSE
T ss_pred             CCEEEEEEEEeECCCCCCCCCC------------------------------------------CCcEEEEEEECCCCcc
Confidence            5889999999999999886543                                          8999999994  3456


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecC----CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCC
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah----~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~  162 (551)
                      .||++++++.||+|||+|.|.+..    ....|.|+|||.+.++ +++||.+.|++.++..+...+.|++|...
T Consensus        63 ~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A           63 LETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             EECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             EeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            899999999999999999998533    2467999999999998 89999999999999988889999999543

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.70  E-value=5.5e-17  Score=152.42  Aligned_cols=107  Identities=22%  Similarity=0.420  Sum_probs=93.4

Q ss_pred             EEeeEEEEEEEEeecCCCCCC-CchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe-
Q 008859           14 YLHGDLDLKIIRARRLPNMDM-MSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA-   91 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~-   91 (551)
                      +-.|.|.|+|++|++|+++|. .+.                                          +||||+|.+... 
T Consensus        27 y~~~~L~V~v~~a~~L~~~d~~~g~------------------------------------------~DPyv~v~l~~~~   64 (171)
T 2q3x_A           27 DKKGQLEVEVIRARSLTQKPGSKST------------------------------------------PAPYVKVYLLENG   64 (171)
T ss_dssp             EETTEEEEEEEEEESCCCCC---CC------------------------------------------CEEEEEEEEEETT
T ss_pred             ECCCEEEEEEEEeeCCCCCCcCCCC------------------------------------------CCceEEEEEECCC
Confidence            456899999999999999884 332                                          899999998542 


Q ss_pred             ---eeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEE-ecCCCC-CceeEEEEeecccccccceeeeEEEccCC
Q 008859           92 ---TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVK-DDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAP  162 (551)
Q Consensus        92 ---~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vk-d~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~  162 (551)
                         ...||++++++.||+|||+|.|.+......|.|+|| |.|.++ +++||.+.|+++++..++..++||+|...
T Consensus        65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A           65 ACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             EEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             ccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence               368999999999999999999999877778999999 999998 79999999999999988889999999544

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.70  E-value=9.1e-17  Score=142.91  Aligned_cols=101  Identities=26%  Similarity=0.444  Sum_probs=83.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----Ce
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~----~~   91 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+.    +.
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~   54 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK   54 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSGG
T ss_pred             CCEEEEEEEEeeCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence            3789999999999999886553                                          8999999992    34


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC---CceeEEEEeecccccccceeeeEEEc
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g---~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ...||++++++.||+|||+|.|.+.+.    ...|.|+|||.+.++   +++||.+.|++.++.... .++||+|
T Consensus        55 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L  128 (129)
T 2bwq_A           55 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  128 (129)
T ss_dssp             GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             cceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence            568999999999999999999996432    467999999999997   799999999999987644 8899997

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.69  E-value=5.7e-17  Score=146.28  Aligned_cols=107  Identities=24%  Similarity=0.416  Sum_probs=90.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----Ce
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~----~~   91 (551)
                      .+.|.|+|++|++|+++|..+.                                          +||||+|.+.    ..
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~   57 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK   57 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCC------------------------------------------CCEEEECCCSSCCSSS
T ss_pred             CCEEEEEEEEccCCCCcCCCCC------------------------------------------CCCEEEEEEecCCCCC
Confidence            4789999999999999887653                                          8999999983    34


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC----CCeEEEEEEecCCCC---CceeEEEEeecccccccceeeeEEEccCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP----LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDIIAPSG  164 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~----~~~l~f~Vkd~d~~g---~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~g  164 (551)
                      ...||++++++.||+|||+|.|.+.+.    ...|.|+|||.+.++   +++||.+.|++.++.... .+.||+|.....
T Consensus        58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~  136 (141)
T 1v27_A           58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDS  136 (141)
T ss_dssp             SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSS
T ss_pred             cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccccc
Confidence            567999999999999999999995432    367999999999997   799999999999987654 889999976544


Q ss_pred             C
Q 008859          165 S  165 (551)
Q Consensus       165 k  165 (551)
                      .
T Consensus       137 g  137 (141)
T 1v27_A          137 G  137 (141)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=2e-16  Score=143.26  Aligned_cols=105  Identities=23%  Similarity=0.421  Sum_probs=89.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      .|.|.|+|++|++|+++|..+                                           +||||+|.+..    .
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------------------~dpyv~v~l~~~~~~~   59 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-------------------------------------------SDPYVRMYLLPDKRRS   59 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-------------------------------------------CCEEEEEEEESCCCSS
T ss_pred             CCEEEEEEEEeECCCCCCCCC-------------------------------------------CCeeEEEEEEcCCCCC
Confidence            578999999999999877432                                           79999999942    2


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC--C-ceeEEEEeecccccccceeeeEEEccCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG--A-QIIGTAAIPAHTIATGELISRWYDIIAPS  163 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g--~-~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~  163 (551)
                      ...||++++++.||+|||+|.|.+...   ...|.|+|||.+.++  + ++||.+.|++.++..+...+.|++|....
T Consensus        60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A           60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred             CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence            567999999999999999999998653   357999999999886  3 69999999999998877889999996554

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.68  E-value=4.3e-17  Score=151.12  Aligned_cols=103  Identities=25%  Similarity=0.426  Sum_probs=90.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC---e-
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ---A-   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~---~-   91 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+..   . 
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~------------------------------------------sDPyVkv~l~~~~~~~   79 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQD------------------------------------------QKVNIRVAVLPCSEST   79 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCC------------------------------------------SEEEEEEEEESCSCHH
T ss_pred             CCEEEEEEEEccCcCCcccCCC------------------------------------------CCEEEEEEEecCCCCC
Confidence            3789999999999999886553                                          89999999954   2 


Q ss_pred             -eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccc-ccceeeeEEEcc
Q 008859           92 -TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDII  160 (551)
Q Consensus        92 -~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~-~g~~i~~w~~Ll  160 (551)
                       ...||++++++.||+|||+|.|.+...   ...|.|+|||.|.++ +++||.+.|++.++. .++....||+|+
T Consensus        80 ~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A           80 TCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             HHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             ccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence             368999999999999999999998764   457999999999998 899999999999996 477889999984

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.67  E-value=2.9e-16  Score=144.50  Aligned_cols=105  Identities=23%  Similarity=0.419  Sum_probs=89.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      .|.|.|+|++|++|+++| .+.                                          +||||+|.+..    .
T Consensus        26 ~~~L~V~v~~a~~L~~~d-~g~------------------------------------------~Dpyv~v~l~~~~~~~   62 (153)
T 3fbk_A           26 DRVLLLHIIEGKGLISKQ-PGT------------------------------------------CDPYVKISLIPEDSRL   62 (153)
T ss_dssp             SSEEEEEEEEEESCCCCS-SSC------------------------------------------CCEEEEEEEESCSCCT
T ss_pred             CCEEEEEEEEeeCCCCCC-CCC------------------------------------------CCEEEEEEEEcCCCCc
Confidence            488999999999999887 332                                          89999999932    3


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeec--CCCCeEEEEEEecCCCC--CceeEEEEeecccccc-cceeeeEEEccCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLA--HPLSNLEIQVKDDDVFG--AQIIGTAAIPAHTIAT-GELISRWYDIIAPS  163 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~va--h~~~~l~f~Vkd~d~~g--~~lIG~v~Ipl~~l~~-g~~i~~w~~Ll~~~  163 (551)
                      ...||++++++.||+|||+|.|.+.  .....|.|+|||.+.++  +++||.+.|++.++.. +...++||+|.+..
T Consensus        63 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~  139 (153)
T 3fbk_A           63 RHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH  139 (153)
T ss_dssp             TCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred             cEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence            4579999999999999999999983  34456999999999985  7999999999999985 78899999996643

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.67  E-value=5.7e-17  Score=145.62  Aligned_cols=108  Identities=28%  Similarity=0.448  Sum_probs=90.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+.+    .
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~   52 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGT------------------------------------------SDPYVKVWLMYKDKRV   52 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTB------------------------------------------CCEEEEEEEEETTEEE
T ss_pred             CCeEEEEEEEeeCCCCcCCCCC------------------------------------------cCeEEEEEEEeCCCcc
Confidence            3889999999999998876543                                          89999999964    3


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCCC---CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~~---~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                      ...||++++++.||+|||+|.|.+....   ..|.|+|+|.+.++ +++||.+.|++.++.  ...+.|++|+...+++.
T Consensus        53 ~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~~~~~  130 (138)
T 3n5a_A           53 EKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARPRQPV  130 (138)
T ss_dssp             EEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHSTTCCE
T ss_pred             ceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCCCCeE
Confidence            5679999999999999999999987664   57999999999998 899999999998743  44567888776666543

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=3.5e-16  Score=141.59  Aligned_cols=83  Identities=20%  Similarity=0.341  Sum_probs=73.3

Q ss_pred             CCcEEEEEEC---CeeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccce
Q 008859           80 SDPYVTVVVP---QATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL  152 (551)
Q Consensus        80 sDpYvtV~l~---~~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~  152 (551)
                      +||||+|.+.   +....||+|++++.||+|||+|.|.+...   ...|.|+|||.|.++ +++||.+.|++.++..+..
T Consensus        44 sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~  123 (138)
T 1wfm_A           44 CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLG  123 (138)
T ss_dssp             CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTT
T ss_pred             cceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCccc
Confidence            8999999993   44568999999999999999999998764   457999999999998 8999999999999987778


Q ss_pred             eeeEEEccCC
Q 008859          153 ISRWYDIIAP  162 (551)
Q Consensus       153 i~~w~~Ll~~  162 (551)
                      .+.|++|...
T Consensus       124 ~~~W~~L~~~  133 (138)
T 1wfm_A          124 AAQWGELKTS  133 (138)
T ss_dssp             CCEEEECCCC
T ss_pred             ccceeeCcCC
Confidence            8999999653

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.66  E-value=3e-16  Score=142.17  Aligned_cols=103  Identities=29%  Similarity=0.484  Sum_probs=89.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      .|.|.|+|++|++|++++..+.                                          +||||+|.+.+    .
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~   65 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGL------------------------------------------ADPYVKLHLLPGASKS   65 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSC------------------------------------------CCEEEEEEEESCCSGG
T ss_pred             CCEEEEEEEEecCCCCCCCCCC------------------------------------------CCCEEEEEEEcCCCCc
Confidence            4889999999999999886543                                          89999999965    3


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll  160 (551)
                      ...||++++++.||+|||+|.|. +...   ...|.|+|||.+.++ +++||.+.|++.++..++...-|++|.
T Consensus        66 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  139 (142)
T 2chd_A           66 NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE  139 (142)
T ss_dssp             GEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred             ceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence            56899999999999999999998 5432   257999999999998 799999999999999888888899883

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.66  E-value=5.7e-17  Score=148.92  Aligned_cols=107  Identities=26%  Similarity=0.391  Sum_probs=85.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CCee-
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQAT-   92 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l--~~~~-   92 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+  .+.. 
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~~~~~~~~~   66 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKRI   66 (153)
T ss_dssp             TTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEEE
T ss_pred             CCEEEEEEEEeECCCCcCCCCC------------------------------------------CCeEEEEEEEeCCeEe
Confidence            5899999999999998886543                                          899999999  4432 


Q ss_pred             -eEEeeecCCCCCCeEeeEEEEeecCCC---CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCC
Q 008859           93 -VARTRVLKNSQEPVWNEHFNIPLAHPL---SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (551)
Q Consensus        93 -v~rTrvi~ns~nP~WnE~F~i~vah~~---~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp  166 (551)
                       ..||++++++.||+|||+|.|.+....   ..|.|+|||.+.++ +++||.+.|++.+  .+...+.|++|+...+++
T Consensus        67 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~~  143 (153)
T 1w15_A           67 SKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQ  143 (153)
T ss_dssp             EEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCC
T ss_pred             ceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCCe
Confidence             569999999999999999999987753   56999999999998 8999999999988  345566777776655554

>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A

Probab=99.66  E-value=2.4e-16  Score=151.61  Aligned_cols=135  Identities=14%  Similarity=0.196  Sum_probs=99.9

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      +..|+.|+++|++|+++|+|+.|+|.                 ...|.++|.++++|||+||||+ |......       
T Consensus        45 ~~~~~~ll~~I~~A~~sI~i~~y~~~-----------------~~~i~~aL~~aa~rGV~Vrii~-D~~~~~~-------   99 (196)
T 4ggj_A           45 ESSLSRLLRALLAARSSLELCLFAFS-----------------SPQLGRAVQLLHQRGVRVRVIT-DCDYMAL-------   99 (196)
T ss_dssp             CCHHHHHHHHHHTCSSEEEEEESCBC-----------------CHHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred             HHHHHHHHHHHHHhheEEEEEEEEeC-----------------CHHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence            57899999999999999999998641                 2589999999999999999997 7532211       


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                            .......|..+||++.....                ....|+|++|||++        ++|+||.|++...+. 
T Consensus       100 ------~~~~~~~l~~~gi~v~~~~~----------------~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~-  148 (196)
T 4ggj_A          100 ------NGSQIGLLRKAGIQVRHDQD----------------LGYMHHKFAIVDKK--------VLITGSLNWTTQAIQ-  148 (196)
T ss_dssp             -------CCHHHHHHHTTCEEEECCS----------------SSCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred             ------cHHHHHHHHhcCCCcccccc----------------cccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence                  11234567778999874211                12459999999998        999999999873221 


Q ss_pred             CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcC
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK  461 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~  461 (551)
                                                    ..|-++.+.-.+++|..+...|++.|+....
T Consensus       149 ------------------------------~n~E~~~~i~~~~~~~~~~~~F~~~W~~~~p  179 (196)
T 4ggj_A          149 ------------------------------NNRENVLIMEDTEYVRLFLEEFERIWEEFDP  179 (196)
T ss_dssp             ------------------------------HCCEEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred             ------------------------------ccceeEEEEECHHHHHHHHHHHHHHHHhCCC
Confidence                                          1233444444456899999999999987544

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.66  E-value=1.1e-15  Score=137.87  Aligned_cols=104  Identities=29%  Similarity=0.433  Sum_probs=87.7

Q ss_pred             eeEEEEEEEEeecCCCCCCC-chhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--ee
Q 008859           16 HGDLDLKIIRARRLPNMDMM-SEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~   92 (551)
                      .+.|.|+|++|++|+++|.+ +.                                          +||||+|.+..  ..
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~------------------------------------------~dpyv~v~~~~~~~~   58 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMT------------------------------------------SDPYIKMTILPEKKH   58 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTB------------------------------------------CEEEEEEEEETTTCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCC------------------------------------------CCCEEEEEEecCCCc
Confidence            47899999999999998864 32                                          89999999953  45


Q ss_pred             eEEeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccce-eeeEEEccC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL-ISRWYDIIA  161 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~-i~~w~~Ll~  161 (551)
                      ..||++++++.||+|||+|.|+ +...   ...|.|+|||.+.++ +++||.+.|++.++..+.. ...|++|..
T Consensus        59 ~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           59 KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             eEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            6899999999999999999996 6543   357999999999998 8999999999999987644 456788843

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.66  E-value=7.2e-16  Score=143.68  Aligned_cols=106  Identities=27%  Similarity=0.449  Sum_probs=87.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+.+    .
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~DPyv~v~l~~~~~~~   73 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGKK   73 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---C
T ss_pred             CCEEEEEEEEeECCCCccCCCC------------------------------------------CCcEEEEEEECCCCcc
Confidence            4899999999999999886543                                          89999999965    3


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk  165 (551)
                      ...||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.|++.++.  +..+.|++|+...++
T Consensus        74 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~~  149 (166)
T 2cm5_A           74 AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDK  149 (166)
T ss_dssp             CEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTTC
T ss_pred             ceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCC--chhHHHHHHHhCCCC
Confidence            568999999999999999999998763   457999999999998 899999999998863  334455555544333

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.65  E-value=6.8e-16  Score=142.72  Aligned_cols=104  Identities=27%  Similarity=0.446  Sum_probs=87.4

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~   91 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+..    .
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~------------------------------------------~dpyv~v~l~~~~~~~   61 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKRL   61 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEEE
T ss_pred             CCEEEEEEEEeeCCCCccCCCC------------------------------------------CCeEEEEEEEeCCcee
Confidence            5899999999999999886553                                          89999999953    2


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccc----------c--ccceeee
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTI----------A--TGELISR  155 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l----------~--~g~~i~~  155 (551)
                      ...||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.|++..+          .  .+..+++
T Consensus        62 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~  141 (159)
T 1tjx_A           62 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ  141 (159)
T ss_dssp             EEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEE
T ss_pred             ceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeee
Confidence            468999999999999999999998765   356999999999998 89999999999853          2  3456778


Q ss_pred             EEEccC
Q 008859          156 WYDIIA  161 (551)
Q Consensus       156 w~~Ll~  161 (551)
                      |++|..
T Consensus       142 W~~L~~  147 (159)
T 1tjx_A          142 WHTLQV  147 (159)
T ss_dssp             EEECBC
T ss_pred             EEECcC
Confidence            888843

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=3.6e-16  Score=142.58  Aligned_cols=109  Identities=26%  Similarity=0.466  Sum_probs=88.5

Q ss_pred             eeEEEEEEEEeecCCC-CCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--ee
Q 008859           16 HGDLDLKIIRARRLPN-MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--AT   92 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~   92 (551)
                      .|.|.|+|++|++|++ ||..+.  +                                  .....+||||+|.+..  ..
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~--~----------------------------------~~~~~~dpyv~v~l~~~~~~   68 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGS--R----------------------------------QDMAHSNPYVKICLLPDQKN   68 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCS--S----------------------------------CTTCCCCCEEEEEEETCCSS
T ss_pred             CCEEEEEEEEEeCCCCccccccc--c----------------------------------ccCCCCCcEEEEEEEeCCCc
Confidence            5799999999999998 343220  0                                  0011289999999953  34


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll  160 (551)
                      ..||++++++.||+|||+|.|.+...   ...|.|+|||.+.++ +++||.+.|++.++..++....|++|.
T Consensus        69 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~  140 (147)
T 2enp_A           69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI  140 (147)
T ss_dssp             CEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred             ceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence            67999999999999999999998753   357999999999998 789999999999998777778899884

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.61  E-value=6.9e-15  Score=149.67  Aligned_cols=124  Identities=24%  Similarity=0.403  Sum_probs=100.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ceee
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV   93 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~v   93 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+.  +...
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~------------------------------------------~dPyv~v~l~~~~~~~   56 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKKK   56 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTSC
T ss_pred             CCEEEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEcCCCee
Confidence            4899999999999999887553                                          8999999993  3456


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEee-cccccc-cceeeeEEEccCCCCCCC
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIP-AHTIAT-GELISRWYDIIAPSGSPP  167 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ip-l~~l~~-g~~i~~w~~Ll~~~gkp~  167 (551)
                      .||++++++.||+|||+|.|.+...   ...|.|+|+|.|.++ +++||.+.|+ +.++.. +.....|++|....++ .
T Consensus        57 ~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~-~  135 (296)
T 1dqv_A           57 FQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSE-K  135 (296)
T ss_dssp             EECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSC-C
T ss_pred             EeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccccccc-c
Confidence            7999999999999999999998654   347999999999998 8999999996 444443 4456789999654433 2


Q ss_pred             CCCceEEEEeeeecc
Q 008859          168 KPGASIQLELKFTPC  182 (551)
Q Consensus       168 k~~G~L~lsl~f~p~  182 (551)
                      ...|+|.+++.|.|.
T Consensus       136 ~~~G~i~vsl~y~~~  150 (296)
T 1dqv_A          136 ADLGELNFSLCYLPT  150 (296)
T ss_dssp             SCCCEEEEEEEEETT
T ss_pred             cccceEEEEEEeccc
Confidence            357999999998763

>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A

Probab=99.59  E-value=1.1e-14  Score=133.47  Aligned_cols=136  Identities=16%  Similarity=0.253  Sum_probs=104.6

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      ...++.+.++|++|+++|+|+.|.+         +        ...|.+.|.++++|||+|+||+ |...+...      
T Consensus        13 ~~~~~~~~~~i~~A~~~I~i~~~~~---------~--------~~~i~~aL~~a~~rGV~Vril~-~~~~~~~~------   68 (155)
T 1byr_A           13 GSARVLVLSAIDSAKTSIRMMAYSF---------T--------APDIMKALVAAKKRGVDVKIVI-DERGNTGR------   68 (155)
T ss_dssp             THHHHHHHHHHHHCSSEEEEEESSB---------C--------CHHHHHHHHHHHHTTCEEEEEE-ESTTCCSH------
T ss_pred             CcHHHHHHHHHHHHhhEEEEEEEEe---------C--------CHHHHHHHHHHHHCCCEEEEEE-eCcccccc------
Confidence            3579999999999999999999854         1        1588999999999999999997 55433110      


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCC
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDT  400 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt  400 (551)
                           ......+.|...|+++.....                ....|+|++|||++        ++++||.|++...+  
T Consensus        69 -----~~~~~~~~L~~~gv~v~~~~~----------------~~~~H~K~~iiD~~--------~~~iGS~N~~~~~~--  117 (155)
T 1byr_A           69 -----ASIAAMNYIANSGIPLRTDSN----------------FPIQHDKVIIVDNV--------TVETGSFNFTKAAE--  117 (155)
T ss_dssp             -----HHHHHHHHHHHTTCCEEEECS----------------SSCCCCCEEEETTT--------EEEEESCCBSHHHH--
T ss_pred             -----ccHHHHHHHHHCCCeEEEcCC----------------cccccceEEEECCC--------EEEEECCCCCcccc--
Confidence                 123445667778998875321                12569999999998        99999999986211  


Q ss_pred             CcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH--HHHHHHHHHHHHHHhhcC
Q 008859          401 PEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP--AAYDVLINFEQRWRKATK  461 (551)
Q Consensus       401 ~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP--aa~dv~~~F~~rW~~~~~  461 (551)
                                                    ..|++..+.++|+  .+.++...|++.|+.+..
T Consensus       118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~~  150 (155)
T 1byr_A          118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGRD  150 (155)
T ss_dssp             ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCEE
T ss_pred             ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCCC
Confidence                                          2467899999993  899999999999987543

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.58  E-value=1.3e-14  Score=130.55  Aligned_cols=96  Identities=22%  Similarity=0.383  Sum_probs=67.7

Q ss_pred             CCcEEEEEECCeeeEEeeecC-CCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccc--eeee
Q 008859           80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGE--LISR  155 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~-ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~--~i~~  155 (551)
                      +||||+|.. + . .||++++ ++.||+|||+|.|.+......|.|+|||.| ++ +++||.+.||++++....  ....
T Consensus        23 ~DPYv~v~~-~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~   98 (131)
T 2cjt_A           23 FNTYVTLKV-Q-N-VKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGE   98 (131)
T ss_dssp             CEEEEEEEE-T-T-EEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred             cCeEEEEEe-c-C-EEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccc
Confidence            899999992 2 2 3676666 599999999999999988778999999999 65 899999999999986432  1223


Q ss_pred             EEEc----cCCCCCCC----CCCceEEEEeee
Q 008859          156 WYDI----IAPSGSPP----KPGASIQLELKF  179 (551)
Q Consensus       156 w~~L----l~~~gkp~----k~~G~L~lsl~f  179 (551)
                      |.++    ...+|+.+    ...+.+.+.++|
T Consensus        99 ~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           99 WLTLDSQAIMADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             EEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             cEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence            5544    32333321    224557777776

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.57  E-value=1.6e-14  Score=130.81  Aligned_cols=101  Identities=20%  Similarity=0.272  Sum_probs=91.7

Q ss_pred             CCcEEEEEECCeeeEEeeecC-CCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceee
Q 008859           80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS  154 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~-ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~  154 (551)
                      +|||++|.+.+.+ .+|++++ ++.||+|||.|.++++.+   .+.|+|.|+|.+.++ +.+||++.|||.++..+..++
T Consensus        37 ~Dp~akv~FRg~k-~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~  115 (144)
T 3l9b_A           37 ADRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVE  115 (144)
T ss_dssp             EEEEEEEEETTEE-EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEE
T ss_pred             CCCeEEEEEeccc-eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEE
Confidence            8999999998877 5999998 699999999999999886   456999999999998 899999999999999888888


Q ss_pred             eEEEccCCCCCCCCCCceEEEEeeeeccC
Q 008859          155 RWYDIIAPSGSPPKPGASIQLELKFTPCD  183 (551)
Q Consensus       155 ~w~~Ll~~~gkp~k~~G~L~lsl~f~p~~  183 (551)
                      .+.+|++.++++.  .+.|.++|+|.|.+
T Consensus       116 l~~~LvD~n~~~~--~a~I~l~l~Y~pp~  142 (144)
T 3l9b_A          116 VSDTLIDDNNAII--KTSLSMEVRYQAAD  142 (144)
T ss_dssp             EEEEEECTTSCEE--EEEEEEEEEEEETT
T ss_pred             EeecccCCCCCcc--ccEEEEEEEecCCC
Confidence            8999999999986  48999999999853

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.54  E-value=2.7e-14  Score=159.64  Aligned_cols=122  Identities=23%  Similarity=0.433  Sum_probs=102.8

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----   90 (551)
                      -.+.|.|+|++|++|+.++....                                        ..+||||+|.+.+    
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~----------------------------------------~~~DPYV~V~l~g~~~d  534 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKN----------------------------------------SIVDPKVIVEIHGVGRD  534 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSS----------------------------------------SCCCEEEEEEEESSGGG
T ss_pred             cceEEEEEEEEcCCCCccccccc----------------------------------------CCCCcEEEEEEecCCCC
Confidence            35789999999999998764100                                        1289999999955    


Q ss_pred             eeeEEeeecCCC-CCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           91 ATVARTRVLKNS-QEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        91 ~~v~rTrvi~ns-~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                      ....||++++++ .||+|||+|.|.+..+. ..|.|+|||.|.++ +++||++.||+..|..|.   +|++|.+..|++.
T Consensus       535 ~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~  611 (624)
T 1djx_A          535 TGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH  611 (624)
T ss_dssp             CEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE
T ss_pred             cceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC
Confidence            245799999997 99999999999998774 57999999999997 899999999999998874   6999999988875


Q ss_pred             CCCceEEEEeeee
Q 008859          168 KPGASIQLELKFT  180 (551)
Q Consensus       168 k~~G~L~lsl~f~  180 (551)
                       ..+.|.|.++|.
T Consensus       612 -~~~~L~v~i~~~  623 (624)
T 1djx_A          612 -PSATLFVKISIQ  623 (624)
T ss_dssp             -EEEEEEEEEEEE
T ss_pred             -CceEEEEEEEEE
Confidence             468899998875

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.54  E-value=4.1e-14  Score=154.07  Aligned_cols=115  Identities=21%  Similarity=0.377  Sum_probs=98.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r   95 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+.+.. .|
T Consensus       386 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------sdpyv~v~~~~~~-~~  422 (510)
T 3jzy_A          386 IGRLMVHVIEATELKACKPNGK------------------------------------------SNPYCEISMGSQS-YT  422 (510)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred             CceEEEEeceeecCCCCCCCCC------------------------------------------CCeEEEEEECCee-cc
Confidence            4789999999999999887654                                          8999999997755 79


Q ss_pred             eeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccce----eeeEEEccCCCCCCCCC
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL----ISRWYDIIAPSGSPPKP  169 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~----i~~w~~Ll~~~gkp~k~  169 (551)
                      |++++++.||+|||+|.|.+.... ..|.|+|||.|.++ +++||.+.+|+.++..+..    +..|+++.+.      .
T Consensus       423 T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~  496 (510)
T 3jzy_A          423 TRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------P  496 (510)
T ss_dssp             CCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------S
T ss_pred             CCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------C
Confidence            999999999999999999987664 56999999999998 8999999999999987654    7889998432      4


Q ss_pred             CceEEEEeee
Q 008859          170 GASIQLELKF  179 (551)
Q Consensus       170 ~G~L~lsl~f  179 (551)
                      .|+|+|++.+
T Consensus       497 ~G~i~l~~~l  506 (510)
T 3jzy_A          497 TGEVWVRFDL  506 (510)
T ss_dssp             SCEEEEEEEE
T ss_pred             CceEEEEEEE
Confidence            5888877765

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.53  E-value=7.8e-16  Score=167.43  Aligned_cols=127  Identities=24%  Similarity=0.419  Sum_probs=26.0

Q ss_pred             EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCee
Q 008859           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQAT   92 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~   92 (551)
                      ....|.|.|+|++|++|+++                                               .||||++.+++..
T Consensus         7 ~r~~~~L~V~VieAk~L~~~-----------------------------------------------ddpYv~v~l~~~~   39 (483)
T 3bxj_A            7 RRVDNVLKLWIIEARELPPK-----------------------------------------------KRYYCELCLDDML   39 (483)
T ss_dssp             EEEEECC-------------------------------------------------------------------------
T ss_pred             ceeccEEEEEEEEcCCcCCC-----------------------------------------------CCCeEEEEECCeE
Confidence            45679999999999999853                                               3799999999887


Q ss_pred             eEEeeecCCC---CCCeEeeEEEEeecCCCCeEEEEEEec-C---CCC-CceeEEEEeecccccccceeeeEEEccCCCC
Q 008859           93 VARTRVLKNS---QEPVWNEHFNIPLAHPLSNLEIQVKDD-D---VFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSG  164 (551)
Q Consensus        93 v~rTrvi~ns---~nP~WnE~F~i~vah~~~~l~f~Vkd~-d---~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~g  164 (551)
                      .+||++++++   .||+|||+|.|.+.+....|+|+|||+ |   .++ +++||.+.||++++..|...++||+|.+..+
T Consensus        40 ~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~  119 (483)
T 3bxj_A           40 YARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTG  119 (483)
T ss_dssp             -------------------CCEECC------------------------------------------CCEECC-------
T ss_pred             EeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCC
Confidence            7899999998   999999999999877778899999994 4   244 8999999999999999889999999976543


Q ss_pred             ---------------------CCCCCCceEEEEeeeeccCCCC
Q 008859          165 ---------------------SPPKPGASIQLELKFTPCDKNP  186 (551)
Q Consensus       165 ---------------------kp~k~~G~L~lsl~f~p~~~~~  186 (551)
                                           +..+..|.|+|+++|.+....|
T Consensus       120 ~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~vlP  162 (483)
T 3bxj_A          120 SGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILP  162 (483)
T ss_dssp             -------------------------------CEEEEEECCBCC
T ss_pred             ccccccccccccccccccccccCCCCCceEEEEEEeeeeeecc
Confidence                                 1223468999999998875444

>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A

Probab=99.53  E-value=1.2e-14  Score=141.32  Aligned_cols=151  Identities=14%  Similarity=0.146  Sum_probs=105.8

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      .++++.|.++|++|+++|+|+.|.|         +        ...|.++|+++|+|||+||||+ |...+...      
T Consensus        57 ~~~~~~ii~~I~~A~~sI~i~~Y~~---------~--------~~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~------  112 (220)
T 4gel_A           57 LRNVAKIVEQIDRAVYSIDLAIYTF---------T--------SLFLADSIKRALQRGVIIRIIS-DGEMVYSK------  112 (220)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEECSCB---------C--------CHHHHHHHHHHHHHTCEEEEEC-CTTTTTST------
T ss_pred             HHHHHHHHHHHHHhhhEEEEEEEEe---------C--------CHHHHHHHHHHHHcCCeEEEEE-echhhhhh------
Confidence            5789999999999999999999864         1        2689999999999999999997 87654321      


Q ss_pred             CcccCCcHHHHhHhcCCCcEEEecCCCCc--ccccccccc--cccccccCccceEEEccCCCCCCcceEEEEceeecccc
Q 008859          321 GVMATHDEETKKFFKHSSVNCVLAPRYAS--SKLSYFKQQ--IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (551)
Q Consensus       321 g~~~t~~~~~~~~~~~~~v~~~l~p~~~~--~~~~~~~~~--~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~  396 (551)
                            . .....+...++.+........  .+..++++.  ..+...+.|.|++++|+.        ++++||+|++..
T Consensus       113 ------~-~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~  177 (220)
T 4gel_A          113 ------G-SQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTAL  177 (220)
T ss_dssp             ------T-CHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHH
T ss_pred             ------H-HHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccc
Confidence                  0 112233345555443111100  011111111  122345778888888887        999999998762


Q ss_pred             ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcC
Q 008859          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK  461 (551)
Q Consensus       397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~  461 (551)
                      -.                               ...|.|+.+...|++|..+...|++.|+....
T Consensus       178 s~-------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~  211 (220)
T 4gel_A          178 GL-------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAK  211 (220)
T ss_dssp             HH-------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEE
T ss_pred             cc-------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhccC
Confidence            11                               13688999999999999999999999997654

>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}

Probab=99.52  E-value=8e-15  Score=158.30  Aligned_cols=165  Identities=10%  Similarity=0.062  Sum_probs=109.7

Q ss_pred             ccCCeeEEEEeccccCCCCCceecCCCCCCCCcchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHH
Q 008859          209 RKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLG  288 (551)
Q Consensus       209 r~g~~v~ly~d~~~~~~~~p~~~l~~G~~y~~~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~  288 (551)
                      ..|+.|+++.+|                    .++|+.+.++|++|+++|+|++|+|       .++.      .+..|.
T Consensus        24 ~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~-------~~d~------~g~~l~   70 (458)
T 3hsi_A           24 LQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYW-------QKDE------AGQEIL   70 (458)
T ss_dssp             CCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCB-------CSSH------HHHHHH
T ss_pred             ccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEE-------ecCc------HHHHHH
Confidence            358999999998                    6889999999999999999999964       2222      247999


Q ss_pred             HHHHHhhhc--CCeEEEEEeCCCCccCccCCCCCCcccCC-cHHHHhHhcCCC--cEEE--ecCCCCccccccccccccc
Q 008859          289 ELLKYKSEE--GVRVLLLVWDDKTSHDKLGVKTPGVMATH-DEETKKFFKHSS--VNCV--LAPRYASSKLSYFKQQIVG  361 (551)
Q Consensus       289 elL~~ka~~--GV~V~iLvwD~~~s~~~~~~~~~g~~~t~-~~~~~~~~~~~~--v~~~--l~p~~~~~~~~~~~~~~~~  361 (551)
                      ++|.+||++  ||+|+||+ |+..+...    .-|..... +......|..+|  |+|.  ++. .|..        ...
T Consensus        71 ~aL~~aa~r~~GV~Vril~-D~~~~~r~----~~g~~~~~~~~~~~~~L~~~g~nv~v~~~~f~-~p~~--------~~~  136 (458)
T 3hsi_A           71 DEIYRVKQENPHLDVKVLI-DWHRAQRN----LLGAEKSATNADWYCEQRQTYQLPDDPNMFFG-VPIN--------TRE  136 (458)
T ss_dssp             HHHHHHHHHSTTCEEEEEE-ETTGGGSC----CC-----CCHHHHHHHHHHHHTCTTCCCCEEE-ECSS--------SSG
T ss_pred             HHHHHHHhcCCCCEEEEEE-ECcccccc----ccccccccccHHHHHHHHhhCCCceEeeeecC-Cccc--------ccc
Confidence            999999999  99999997 87421110    00000000 123333343333  6655  431 1211        113


Q ss_pred             ccccCccceEEEccCCCCCCcceEEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEe
Q 008859          362 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLD  441 (551)
Q Consensus       362 ~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~  441 (551)
                      .+.++|+|++|||++        + ++||+||.+.++..                          ......|+|+.  +.
T Consensus       137 ~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~--------------------------~~~~~~drd~~--i~  179 (458)
T 3hsi_A          137 VFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQ--------------------------FEKYRYDRYQK--IT  179 (458)
T ss_dssp             GGCCEECCEEEETTE--------E-EEESCCBSTTTTTC--------------------------SSCCEECCEEE--EE
T ss_pred             ccCcceeeEEEECCC--------E-EEEeeecCHHHhcC--------------------------CcccCcchhhh--hc
Confidence            567899999999997        7 55669999944431                          01123488844  89


Q ss_pred             CHHHHHHHHHHH--HHHH
Q 008859          442 GPAAYDVLINFE--QRWR  457 (551)
Q Consensus       442 GPaa~dv~~~F~--~rW~  457 (551)
                      ||++.|....|.  ..|+
T Consensus       180 g~~~~D~~~~~~~~~~~~  197 (458)
T 3hsi_A          180 HAELADSMVNFINDYLLD  197 (458)
T ss_dssp             CHHHHHHHHHHHHHTTCC
T ss_pred             CchHHHHHHHHHHhhhhc
Confidence            999999999994  4464

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.50  E-value=1.1e-13  Score=151.86  Aligned_cols=106  Identities=21%  Similarity=0.299  Sum_probs=91.1

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|+. |.++.                                          +||||+|.+.+.. .||
T Consensus       394 ~~L~V~V~~A~~L~~-D~~g~------------------------------------------sDPYV~v~l~~~~-~kT  429 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWG-DYTTA------------------------------------------TDAYLKVFFGGQE-FRT  429 (540)
T ss_dssp             EEEEEEEEEEESCCC-SSCSC------------------------------------------CCEEEEEEETTEE-EEC
T ss_pred             cEEEEEEEEccCCCc-ccCCC------------------------------------------cCeEEEEEECCEe-eee
Confidence            789999999999998 87664                                          8999999999866 899


Q ss_pred             eecCCCCCCeEeeEEEEeecC--CCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceE
Q 008859           97 RVLKNSQEPVWNEHFNIPLAH--PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI  173 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah--~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L  173 (551)
                      +|++++.||+|||+|.|.+..  ....|.|+|||.|.++ +++||.+.+++.   .|. .+.|++|         ..|.|
T Consensus       430 kvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g~-~~~~~~l---------~~G~l  496 (540)
T 3nsj_A          430 GVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SGF-HEVTCEL---------NHGRV  496 (540)
T ss_dssp             CCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SEE-EEEEEEC---------SSSEE
T ss_pred             eeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CCc-EEEEEEc---------CCeEE
Confidence            999999999999999998643  5667999999999998 799999999987   354 6789987         34788


Q ss_pred             EEEeee
Q 008859          174 QLELKF  179 (551)
Q Consensus       174 ~lsl~f  179 (551)
                      ++++..
T Consensus       497 ~~~~~~  502 (540)
T 3nsj_A          497 KFSYHA  502 (540)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887663

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.49  E-value=1.3e-13  Score=129.24  Aligned_cols=66  Identities=23%  Similarity=0.417  Sum_probs=57.6

Q ss_pred             CCcEEEEEECCeeeEEeeecC-CCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccc
Q 008859           80 SDPYVTVVVPQATVARTRVLK-NSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT  149 (551)
Q Consensus        80 sDpYvtV~l~~~~v~rTrvi~-ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~  149 (551)
                      +||||+|. .+ . .||++++ ++.||+|||+|.|.+......|.|+|||.| ++ +++||++.||++++..
T Consensus        32 ~DPYV~v~-~~-~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           32 FNTYVTLK-VQ-N-VESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             CEEEEEEE-ET-T-EEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCB
T ss_pred             CCeEEEEE-ec-c-eEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcc
Confidence            89999999 22 2 4787776 599999999999999988788999999999 65 8999999999999864

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.47  E-value=2.2e-13  Score=137.15  Aligned_cols=104  Identities=26%  Similarity=0.442  Sum_probs=86.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ce--
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QA--   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~--   91 (551)
                      .|.|.|+|++|++|+++|..+.                                          +||||+|.+.  +.  
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~------------------------------------------~dpyv~v~~~~~~~~~  186 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKRL  186 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEEE
T ss_pred             CCceEEEEEEeECCCCcCCCCC------------------------------------------cCeEEEEEEEeCCcEe
Confidence            3689999999999999886553                                          8999999984  22  


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccc------------ccceeee
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELISR  155 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~------------~g~~i~~  155 (551)
                      ...||++++++.||+|||+|.|.+..+   ...|.|+|||.+.++ +++||.+.|++..+.            .+..+.+
T Consensus       187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~  266 (284)
T 2r83_A          187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ  266 (284)
T ss_dssp             EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEE
T ss_pred             eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchhe
Confidence            467999999999999999999998765   246999999999998 899999999997642            2345677


Q ss_pred             EEEccC
Q 008859          156 WYDIIA  161 (551)
Q Consensus       156 w~~Ll~  161 (551)
                      |++|..
T Consensus       267 W~~L~~  272 (284)
T 2r83_A          267 WHTLQV  272 (284)
T ss_dssp             EEECBC
T ss_pred             eeecCC
Confidence            888743

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.43  E-value=2.7e-13  Score=153.41  Aligned_cols=102  Identities=27%  Similarity=0.472  Sum_probs=91.4

Q ss_pred             eeEEEEEEEEeecCCC---CCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 008859           16 HGDLDLKIIRARRLPN---MDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--   90 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--   90 (551)
                      .|.|.|+|++|++|++   +|..+.                                          +||||+|.+.+  
T Consensus        17 ~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------------------sDPYV~V~l~~~~   54 (749)
T 1cjy_A           17 SHKFTVVVLRATKVTKGAFGDMLDT------------------------------------------PDPYVELFISTTP   54 (749)
T ss_dssp             CEEEEEEEEEEECCCSCHHHHHHCC------------------------------------------CCEEEEEECTTST
T ss_pred             ccEEEEEEEEEECCCCccccCCCCC------------------------------------------cCeEEEEEEecCC
Confidence            4799999999999998   665443                                          89999999985  


Q ss_pred             eeeEEeeecCCCCCCeEeeEEEEeecCC-CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEc
Q 008859           91 ATVARTRVLKNSQEPVWNEHFNIPLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        91 ~~v~rTrvi~ns~nP~WnE~F~i~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ....||+|++++.||+|||+|.|.+..+ ...|+|+|||.|.+++++||.+.|++.++..|...+.|++|
T Consensus        55 ~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L  124 (749)
T 1cjy_A           55 DSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF  124 (749)
T ss_dssp             TCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEE
T ss_pred             CCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEec
Confidence            3567999999999999999999999874 56799999999999999999999999999999889999999

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.43  E-value=4.1e-14  Score=143.91  Aligned_cols=111  Identities=28%  Similarity=0.426  Sum_probs=92.6

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--C--ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--Q--AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~--~~   92 (551)
                      |.|.|+|++|++|+++|..+.                                          +||||+|.+.  +  ..
T Consensus       152 ~~l~v~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~l~~~~~~~~  189 (296)
T 1dqv_A          152 GLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRLK  189 (296)
T ss_dssp             TEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTTS
T ss_pred             ceeEEEEEEeecCCccCCCCC------------------------------------------CCcEEEEEEEeCCcCcc
Confidence            889999999999999987653                                          8999999995  2  24


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k  168 (551)
                      ..||++++++.||+|||+|.|.+...   ...|.|+|||.+.+| +++||.+.|++..+.. ...+.|++++...+++..
T Consensus       190 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~~~~  268 (296)
T 1dqv_A          190 KRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRKPVE  268 (296)
T ss_dssp             CEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSSCSC
T ss_pred             ceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCCcee
Confidence            57999999999999999999998775   346999999999998 8999999999987643 245778888777777654


Q ss_pred             CC
Q 008859          169 PG  170 (551)
Q Consensus       169 ~~  170 (551)
                      ..
T Consensus       269 ~w  270 (296)
T 1dqv_A          269 HW  270 (296)
T ss_dssp             SC
T ss_pred             Ee
Confidence            33

>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*

Probab=99.23  E-value=3.4e-11  Score=135.23  Aligned_cols=145  Identities=15%  Similarity=0.151  Sum_probs=104.4

Q ss_pred             cchHHHHHHHHHhccc-----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCcc
Q 008859          241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL  315 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~-----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~  315 (551)
                      .+.|+.+.+.|++|++     +|+|+.|.+       . +        +..+.++|+++|++||+|+||+ |..+.... 
T Consensus       346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~-------~-~--------d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~-  407 (687)
T 1xdp_A          346 YHTFEHVLELLRQASFDPSVLAIKINIYRV-------A-K--------DSRIIDSMIHAAHNGKKVTVVV-ELQARFDE-  407 (687)
T ss_dssp             TBCTHHHHHHHHHHHHCTTEEEEEEEESSC-------C-T--------TCHHHHHHHHHHHTTCEEEEEE-CTTCSSTT-
T ss_pred             hhhhhhHHHHHHHHhhCCcceEEEEEeeee-------c-C--------cHHHHHHHHHHHhcCCEEEEEE-CCCcccch-
Confidence            3568999999999997     999988843       1 1        2689999999999999999997 87652210 


Q ss_pred             CCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccc
Q 008859          316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCD  395 (551)
Q Consensus       316 ~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~  395 (551)
                       .        .+....+.|..+||++...  .+              .++.|+|++|||++..+. -+-.+|+||.|+..
T Consensus       408 -~--------~n~~~~~~L~~aGV~V~~~--~~--------------~~k~H~Ki~VID~re~~~-i~~~a~iGS~N~d~  461 (687)
T 1xdp_A          408 -E--------ANIHWAKRLTEAGVHVIFS--AP--------------GLKIHAKLFLISRKENGE-VVRYAHIGTGNFNE  461 (687)
T ss_dssp             -T--------TTTTTTHHHHHHTCEEEEC--CT--------------TCEECCEEEEEEEEETTE-EEEEEEEESSCSCT
T ss_pred             -h--------hHHHHHHHHHHCCCEEEEe--cC--------------CccccceEEEEEeccCCe-EEEEEEEeCCcCCc
Confidence             0        0113345567789998742  11              235799999999521000 00139999999876


Q ss_pred             cccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHhhcC
Q 008859          396 GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK  461 (551)
Q Consensus       396 ~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~~~~  461 (551)
                      .-                                ..-|+|+++.++|| +|.++...|.+.|..+..
T Consensus       462 rs--------------------------------~~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~  496 (687)
T 1xdp_A          462 KT--------------------------------ARLYTDYSLLTADARITNEVRRVFNFIENPYRP  496 (687)
T ss_dssp             TG--------------------------------GGTEEEEEEEECCHHHHHHHHHHHHHHHCTTSC
T ss_pred             ch--------------------------------hhhcceEEEEEeCHHHHHHHHHHHHHHHhhccc
Confidence            21                                13589999999997 699999999999987544

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.19  E-value=5.5e-11  Score=134.26  Aligned_cols=107  Identities=22%  Similarity=0.416  Sum_probs=91.3

Q ss_pred             EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----
Q 008859           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----   89 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~----   89 (551)
                      +.++.|.|+|++|++|+++|..+.                                          +||||++.+.    
T Consensus       169 ~~~~~L~V~v~~a~~L~~~d~~g~------------------------------------------sDPyvkv~l~p~~~  206 (674)
T 3pfq_A          169 IDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDPK  206 (674)
T ss_dssp             ECSSEEEEEEEEEESCCCCSTTSS------------------------------------------CCEEEEEEEESCSS
T ss_pred             eccceeeeeeecccccCCCCcccc------------------------------------------cCcccccccccCcc
Confidence            346889999999999999987654                                          8999999982    


Q ss_pred             CeeeEEeeecCCCCCCeEeeEEEEeecCC--CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCC
Q 008859           90 QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPS  163 (551)
Q Consensus        90 ~~~v~rTrvi~ns~nP~WnE~F~i~vah~--~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~  163 (551)
                      .....||++++++.||.|||+|.|.+...  ...|.|+|||.|.++ +++||.+.+++.++..+. .++|++++...
T Consensus       207 ~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~  282 (674)
T 3pfq_A          207 SESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE  282 (674)
T ss_dssp             CCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred             ccccccccccccccCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeecccc
Confidence            23457999999999999999999998654  346999999999998 899999999999998654 58999997653

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.17  E-value=7.6e-11  Score=135.00  Aligned_cols=113  Identities=22%  Similarity=0.391  Sum_probs=92.7

Q ss_pred             EeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----
Q 008859           15 LHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----   90 (551)
Q Consensus        15 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----   90 (551)
                      ..|+|.|+|++|++|+++                                              .+||||+|.+.+    
T Consensus       676 ~~~~L~V~Visa~~L~~~----------------------------------------------~~DPYV~V~l~g~p~d  709 (799)
T 2zkm_X          676 VATTLSITVISGQFLSER----------------------------------------------SVRTYVEVELFGLPGD  709 (799)
T ss_dssp             TCEEEEEEEEEEESCCSS----------------------------------------------CCCEEEEEEEECCTTS
T ss_pred             eeeeEEEEEEeccccCcc----------------------------------------------CCCcEEEEEEEecCCC
Confidence            368999999999999842                                              189999999943    


Q ss_pred             -eeeEEee-ecCC-CCCCeEee-EEEE-eecCC-CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCC
Q 008859           91 -ATVARTR-VLKN-SQEPVWNE-HFNI-PLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSG  164 (551)
Q Consensus        91 -~~v~rTr-vi~n-s~nP~WnE-~F~i-~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~g  164 (551)
                       .+..||+ ++++ +.||+||| +|.| .+..+ ...|.|+|+|.+   +++||.+.||++.|..|   .+|++|.+..|
T Consensus       710 ~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g  783 (799)
T 2zkm_X          710 PKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSG---YHHLCLHSESN  783 (799)
T ss_dssp             CCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTC
T ss_pred             cccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCC---cEEEeccCCCC
Confidence             2346999 8875 69999999 6999 77655 457899999987   89999999999999887   46899998888


Q ss_pred             CCCCCCceEEEEeeee
Q 008859          165 SPPKPGASIQLELKFT  180 (551)
Q Consensus       165 kp~k~~G~L~lsl~f~  180 (551)
                      ++. ..+.|.|.+++.
T Consensus       784 ~~~-~~~~Lfv~i~~~  798 (799)
T 2zkm_X          784 MPL-TMPALFIFLEMK  798 (799)
T ss_dssp             CEE-EEEEEEEEEEEE
T ss_pred             CCC-CceEEEEEEEEE
Confidence            866 357888888764

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.15  E-value=1.2e-10  Score=132.98  Aligned_cols=113  Identities=25%  Similarity=0.412  Sum_probs=93.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe----
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA----   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~----   91 (551)
                      .++|.|+|++|++|+.+                                              .+||||+|.+.+.    
T Consensus       649 ~~~L~V~Visaq~L~~~----------------------------------------------~~DPYV~V~l~g~p~d~  682 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----------------------------------------------QISSYVEVEMYGLPTDT  682 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----------------------------------------------CCCEEEEEEEESSGGGC
T ss_pred             ceEEEEEEEEcccCCCC----------------------------------------------CCCCeEEEEEeCCCccc
Confidence            57899999999999842                                              1799999999651    


Q ss_pred             --eeEEeeecCC-CCCCeEeeE-EEEe-ecCC-CCeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCC
Q 008859           92 --TVARTRVLKN-SQEPVWNEH-FNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGS  165 (551)
Q Consensus        92 --~v~rTrvi~n-s~nP~WnE~-F~i~-vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gk  165 (551)
                        ...||+++++ +.||+|||+ |.|. +..+ ...|.|+|+|.+   +++||++.||++.|..|   -++++|.+..|+
T Consensus       683 ~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~  756 (816)
T 3qr0_A          683 VRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPG---YRHVPLRNESNR  756 (816)
T ss_dssp             EEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCE---EEEEEEECTTSC
T ss_pred             ccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCc---ceEEEEeCCCCC
Confidence              4469999986 699999998 9998 6555 357899999985   79999999999999988   458999999988


Q ss_pred             CCCCCceEEEEeeeec
Q 008859          166 PPKPGASIQLELKFTP  181 (551)
Q Consensus       166 p~k~~G~L~lsl~f~p  181 (551)
                      +. ..+.|.|.+.+..
T Consensus       757 ~~-~~atLfv~i~~~~  771 (816)
T 3qr0_A          757 PL-GLASVFAHIVAKD  771 (816)
T ss_dssp             EE-EEEEEEEEEEEEE
T ss_pred             CC-CceEEEEEEEEEe
Confidence            76 3477887777654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.14  E-value=9.1e-11  Score=134.81  Aligned_cols=95  Identities=23%  Similarity=0.409  Sum_probs=78.5

Q ss_pred             CCcEEEEEECC-----eeeEEeeecCC-CCCCeEee-EEEEe-ecCC-CCeEEEEEEecCCCCCceeEEEEeeccccccc
Q 008859           80 SDPYVTVVVPQ-----ATVARTRVLKN-SQEPVWNE-HFNIP-LAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG  150 (551)
Q Consensus        80 sDpYvtV~l~~-----~~v~rTrvi~n-s~nP~WnE-~F~i~-vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g  150 (551)
                      +||||+|.+.+     ....||+|+++ +.||+||| +|.|. |..+ ...|.|+|+|.|   +++||++.|||..|..|
T Consensus       742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~G  818 (885)
T 3ohm_B          742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSG  818 (885)
T ss_dssp             CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCE
T ss_pred             CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCC
Confidence            79999999965     23469999976 69999999 69998 6544 457999999987   89999999999999988


Q ss_pred             ceeeeEEEccCCCCCCCCCCceEEEEeeeec
Q 008859          151 ELISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (551)
Q Consensus       151 ~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p  181 (551)
                         -++++|.+..|++. ..+.|.|.+.+..
T Consensus       819 ---yR~vpL~~~~g~~l-~~atLfv~i~~~~  845 (885)
T 3ohm_B          819 ---YHYVCLRNEANQPL-CLPALLIYTEASD  845 (885)
T ss_dssp             ---EEEEEEECTTSCEE-EEEEEEEEEEEEE
T ss_pred             ---ceEEEecCCCCCcc-CceEEEEEEEEEe
Confidence               45799999988865 4578888888764

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.05  E-value=1.8e-09  Score=96.45  Aligned_cols=91  Identities=19%  Similarity=0.389  Sum_probs=77.8

Q ss_pred             CCcEEEEEECCeee---EEe-eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccc-----cc
Q 008859           80 SDPYVTVVVPQATV---ART-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG  150 (551)
Q Consensus        80 sDpYvtV~l~~~~v---~rT-rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~-----~g  150 (551)
                      .||||.|.++....   ++| ...+.+..|.|||.|.-.+. ....|+|.|+++..   ++|..++|++++|+     .+
T Consensus        32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~  107 (138)
T 2enj_A           32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN  107 (138)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred             CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence            79999999998766   899 66666999999999999875 45589999997765   99999999999998     34


Q ss_pred             ceeeeEEEccCCCCCCCCCCceEEEEeeeecc
Q 008859          151 ELISRWYDIIAPSGSPPKPGASIQLELKFTPC  182 (551)
Q Consensus       151 ~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p~  182 (551)
                      ...+.|++|        ++.|+|++.++|.-.
T Consensus       108 g~~e~WvdL--------eP~Gkl~v~i~~~~e  131 (138)
T 2enj_A          108 GKTEIWLEL--------KPQGRMLMNARYFLE  131 (138)
T ss_dssp             TCEEEEEEC--------BSSCEEEEEEEECCC
T ss_pred             CceEEEEec--------ccCcEEEEEEEEEEe
Confidence            578899999        467999999999643

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.98  E-value=6.6e-09  Score=91.57  Aligned_cols=89  Identities=16%  Similarity=0.349  Sum_probs=76.3

Q ss_pred             CCcEEEEEECCeeeE---Ee-eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccc-----cc
Q 008859           80 SDPYVTVVVPQATVA---RT-RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----TG  150 (551)
Q Consensus        80 sDpYvtV~l~~~~v~---rT-rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~-----~g  150 (551)
                      .||||.|.++....+   +| ...+.+..|.|||.|.-.+. ....|+|.|+++..   ++|..++|++++|+     .+
T Consensus        27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~  102 (126)
T 1yrk_A           27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN  102 (126)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred             CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence            899999999887655   88 55666999999999999975 45589999998766   99999999999998     34


Q ss_pred             ceeeeEEEccCCCCCCCCCCceEEEEeeee
Q 008859          151 ELISRWYDIIAPSGSPPKPGASIQLELKFT  180 (551)
Q Consensus       151 ~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~  180 (551)
                      ...+.|++|        ++.|+|++.++|+
T Consensus       103 g~~e~WvdL--------eP~Gkl~~~i~~~  124 (126)
T 1yrk_A          103 GKAEFWLDL--------QPQAKVLMSVQYF  124 (126)
T ss_dssp             TEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred             CceEEEEec--------ccCcEEEEEEEEe
Confidence            578899999        4679999999986

>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4

Probab=98.90  E-value=1e-08  Score=114.86  Aligned_cols=142  Identities=13%  Similarity=0.128  Sum_probs=97.4

Q ss_pred             cchHHHHHHHHHhccc-----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCcc
Q 008859          241 GTCWEDICHAISEAHH-----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKL  315 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~-----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~  315 (551)
                      .+.|+.+.++|++|++     +|.++.|.+.                .+..+.++|.+||++||+|++|| | .++... 
T Consensus       351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~----------------~ds~Iv~ALi~AA~rGv~V~vLv-e-l~arfd-  411 (705)
T 2o8r_A          351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVA----------------ENSSIISALEAAAQSGKKVSVFV-E-LKARFD-  411 (705)
T ss_dssp             TBCSHHHHHHHHHHHTCTTEEEEEEEESCCC----------------SCCHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred             hHhHHHHHHHHHHhccCCCceEEEEEEEEEc----------------CCHHHHHHHHHHHHCCCEEEEEE-e-CCCCcc-
Confidence            4679999999999999     9999999541                13699999999999999999998 7 544320 


Q ss_pred             CCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccC--CCCCCcceEEEEceeec
Q 008859          316 GVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQ--ASGNNRKITAFIGGIDL  393 (551)
Q Consensus       316 ~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~--~~~~~~~~vafvGG~dL  393 (551)
                              ...+....+.|+.+||+|+..  .              ..+++|+|++|||++  -.|.-++ .+++|.-|+
T Consensus       412 --------ee~ni~wa~~Le~aGv~Vv~g--~--------------~~lk~H~Ki~lIdrr~~~~g~~~~-y~~igtGN~  466 (705)
T 2o8r_A          412 --------EENNLRLSERMRRSGIRIVYS--M--------------PGLKVHAKTALILYHTPAGERPQG-IALLSTGNF  466 (705)
T ss_dssp             -----------CHHHHHHHHHHTCEEEEC--C--------------TTCCBCCCEEEEEECCCSSSCCCE-EEEEESSCS
T ss_pred             --------hhhhHHHHHHHHHCCCEEEEc--c--------------CCCCceeEEEEEecccccCCceeE-EEeccccce
Confidence                    011345677788999998741  1              246889999999986  2221111 222221111


Q ss_pred             cccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHh
Q 008859          394 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRK  458 (551)
Q Consensus       394 ~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~  458 (551)
                      .+                                ....-|.|+++...+| ++.|+...|..-|..
T Consensus       467 n~--------------------------------~tariy~D~~l~t~~~~i~~dl~~vF~~~tg~  500 (705)
T 2o8r_A          467 NE--------------------------------TTARIYSDTTLMTANTDIVHDVYRLFRILDGD  500 (705)
T ss_dssp             SC--------------------------------CCSSCEEEEEEEECCHHHHHHHHHHHHHHTTC
T ss_pred             ee--------------------------------eEEEEEeeeeeeecChHHHHHHHHHHHHHhCC
Confidence            11                                0012477888888876 669999999888753

>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}

Probab=98.69  E-value=6e-08  Score=104.57  Aligned_cols=149  Identities=18%  Similarity=0.069  Sum_probs=98.2

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTP  320 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~  320 (551)
                      ..+...+.++|.+|+++|+|++.      |++  +        +..+.++|+.++++||+|+||+ +...+...+.....
T Consensus       257 ~~i~~~~~~lI~~A~~~I~I~tp------Yf~--p--------~~~~~~aL~~Aa~rGV~VrIi~-~~~~and~y~~~~~  319 (458)
T 3hsi_A          257 NELNQVIEDLFLQVQKKLVICTP------YFN--F--------PRTLQHKIATLLENGKRVEIIV-GDKVANDFYIPPEQ  319 (458)
T ss_dssp             CHHHHHHHHHHHTCSSEEEEECS------SSC--C--------CHHHHHHHHHHHTTTCEEEEEE-ECGGGSTTCCCTTS
T ss_pred             hHHHHHHHHHHHhcccEEEEEEe------ccC--C--------CHHHHHHHHHHHHCCCeEEEEE-CCccccCCccCCcc
Confidence            56888999999999999999975      234  2        2689999999999999999998 77643221100000


Q ss_pred             C--cccCCcH--HH--H------hHhcCCC-cEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEE
Q 008859          321 G--VMATHDE--ET--K------KFFKHSS-VNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAF  387 (551)
Q Consensus       321 g--~~~t~~~--~~--~------~~~~~~~-v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vaf  387 (551)
                      .  .++....  +.  +      ..+..+| +.+.+.. +.              ....|.|++|||++        +++
T Consensus       320 ~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~-~~--------------~~~lHaK~~vvD~~--------~~~  376 (458)
T 3hsi_A          320 PFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWR-DG--------------DNTYHLKGVWVDDR--------YIL  376 (458)
T ss_dssp             CCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEEC-BT--------------TBEECCCEEEETTT--------EEE
T ss_pred             hhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEe-cC--------------CCceeEEEEEECCe--------EEE
Confidence            0  0111000  00  1      1122345 3333211 11              12459999999998        999


Q ss_pred             EceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH---HHHHHHHHHHHHHHhhcC
Q 008859          388 IGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP---AAYDVLINFEQRWRKATK  461 (551)
Q Consensus       388 vGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP---aa~dv~~~F~~rW~~~~~  461 (551)
                      ||+.|+...-+.-               +                 ..+.+.|.+|   .+.++...|++.|..+..
T Consensus       377 vGS~N~d~RS~~l---------------N-----------------~E~~~~i~~~~~~l~~~l~~~f~~~~~~s~~  421 (458)
T 3hsi_A          377 LTGNNLNPRAWRL---------------D-----------------AENGLLIYDPQQQLLAQVEKEQNQIRQHTKV  421 (458)
T ss_dssp             EECCCCSHHHHHT---------------C-----------------EEEEEEEECTTCSSHHHHHHHHHHHHTTEEE
T ss_pred             ecCCCCCcchhhh---------------C-----------------ceeEEEEeCCcHHHHHHHHHHHHHHHHhCeE
Confidence            9999997622210               1                 3788889888   799999999999987554

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*

Probab=98.43  E-value=1.3e-06  Score=95.15  Aligned_cols=161  Identities=18%  Similarity=0.205  Sum_probs=91.1

Q ss_pred             chHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCC
Q 008859          242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG  321 (551)
Q Consensus       242 ~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g  321 (551)
                      .....+.++|.+||++|||+.-.|++  |++  |.. .   .+..+.++|+.+++|||+|+||+ +..............
T Consensus       314 ~~~~~~~~~I~~A~~~I~I~tq~~~p--yf~--p~~-~---~~~~i~~aL~~Aa~rGV~VrIl~-~~~~~~~~~~~a~~~  384 (506)
T 1v0w_A          314 PEESALRALVASAKGHIEISQQDLNA--TCP--PLP-R---YDIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGSGGYS  384 (506)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEESCSSC--CTT--TSC-S---CCHHHHHHHHHHHHTTCEEEEEE-CCGGGCC------CC
T ss_pred             cHHHHHHHHHhCcCcEEEEEeccccc--ccc--Ccc-c---chHHHHHHHHHHHhCCCcEEEEe-CCCCchHHHHHhHHH
Confidence            47889999999999999999622211  122  210 0   13689999999999999999998 654311100000000


Q ss_pred             cccCCcHH-----HHhHhcCC-----------CcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceE
Q 008859          322 VMATHDEE-----TKKFFKHS-----------SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKIT  385 (551)
Q Consensus       322 ~~~t~~~~-----~~~~~~~~-----------~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~v  385 (551)
                      .+...-+.     ..-.+-..           ++++.-....+.  ..+    ..+.....|.|++|||++        +
T Consensus       385 ~~~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~--~~~----~~~~~~~lHaK~~vvD~~--------~  450 (506)
T 1v0w_A          385 QIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPN--GKW----ADGHPYAQHHKLVSVDSS--------T  450 (506)
T ss_dssp             CCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSS--SSC----TTSCCCCBCCEEEEETTT--------E
T ss_pred             HHHHHHHhhhhhcccchhcccccchhccccccceeeeeccccCc--ccc----ccCccccceEEEEEECCc--------E
Confidence            00000000     00000001           123210000000  000    000123569999999998        9


Q ss_pred             EEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHH-HHhhc
Q 008859          386 AFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQR-WRKAT  460 (551)
Q Consensus       386 afvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~r-W~~~~  460 (551)
                      ++||+.|+.. |.                                  ++.+.+.|++| .|.++...|.+. |+...
T Consensus       451 ~~vGS~N~d~-rS----------------------------------~~E~~l~i~~~~~a~~l~~~f~~~~w~~s~  492 (506)
T 1v0w_A          451 FYIGSKNLYP-SW----------------------------------LQDFGYIVESPEAAKQLDAKLLDPQWKYSQ  492 (506)
T ss_dssp             EEEESCCSSC-CC----------------------------------SBCEEEEEECHHHHHHHHHHTHHHHHHHHG
T ss_pred             EEEeCCCCCC-cc----------------------------------hhhceeEecCHHHHHHHHHHHHHHHHhhcc
Confidence            9999999954 21                                  24788999998 688999999975 87544

>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4

Probab=97.13  E-value=0.0011  Score=74.32  Aligned_cols=139  Identities=16%  Similarity=0.170  Sum_probs=93.8

Q ss_pred             cCCCCCCCCcchHHHHHHHHHhccc----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeC
Q 008859          232 LDGGKLYKPGTCWEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWD  307 (551)
Q Consensus       232 l~~G~~y~~~~~~~~l~~aI~~A~~----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD  307 (551)
                      |.-|+....+.+.+.+..+|..|++    +|+|..-.+         +        +..+.++|.++|++||+|+|+| .
T Consensus       509 l~~sP~~~~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~l---------~--------D~~ii~aL~~As~~GV~V~LIV-R  570 (705)
T 2o8r_A          509 LLVARYNMGEAITNLIEREIENVKRGKRGYMLLKMNGL---------Q--------DKNVITQLYRASEAGVEIDLIV-R  570 (705)
T ss_dssp             CEETTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEESCB---------C--------CHHHHHHHHHHHHTTCEEEEEE-S
T ss_pred             EEECCchHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC---------C--------CHHHHHHHHHHHHCCCeEEEEE-c
Confidence            3337666667788889999999998    999987532         2        3699999999999999999998 4


Q ss_pred             CCCccCccCCCCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEE---ccCCCCCCcce
Q 008859          308 DKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLV---DTQASGNNRKI  384 (551)
Q Consensus       308 ~~~s~~~~~~~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVV---D~~~~~~~~~~  384 (551)
                      +.-+..      .|+         .  ...++.|.          +++     +-+.. |-|+.+.   |+.        
T Consensus       571 GiC~L~------Pgv---------~--~sdni~V~----------Siv-----gr~Le-h~RIy~f~~gd~~--------  609 (705)
T 2o8r_A          571 GICCLV------PDM---------P--QSRNIRVT----------RLV-----DMYLE-HSRIWCFHNGGKE--------  609 (705)
T ss_dssp             SCBCSC------CSS---------G--GGTTEEEE----------ECC-----SSSEE-CCCEEEECGGGSC--------
T ss_pred             cccccC------CCC---------C--CCCCeEEE----------eeH-----HHHHh-cCEEEEEECCCCc--------
Confidence            432221      111         0  01233332          111     11223 5588888   444        


Q ss_pred             EEEEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHhhcC
Q 008859          385 TAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK  461 (551)
Q Consensus       385 vafvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~~~~  461 (551)
                      .+|+|+.|+...-++-               .                 .-+.+-|..| .+..|...|+..|....+
T Consensus       610 ~~~IGSAn~m~Rnl~~---------------r-----------------~Ev~~~i~d~~~~~~l~~i~~~~l~d~~~  655 (705)
T 2o8r_A          610 EVFISSADWMKRNLYN---------------R-----------------IETACPVLDPTLRREIIDILEIQLRDNIK  655 (705)
T ss_dssp             EEEEESCCBCHHHHHT---------------S-----------------BCEEEECCSHHHHHHHHHHHHHHHHCCSS
T ss_pred             EEEEeccccchhhhhh---------------e-----------------eEEEEEEcCHHHHHHHHHHHHHhhhhhhc
Confidence            9999999997633331               0                 2567777777 677888899999987655

>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*

Probab=96.79  E-value=0.0039  Score=70.09  Aligned_cols=131  Identities=19%  Similarity=0.207  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhccc----eEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCC
Q 008859          244 WEDICHAISEAHH----LIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKT  319 (551)
Q Consensus       244 ~~~l~~aI~~A~~----~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~  319 (551)
                      .+.+..+|..|++    +|+|....+         +        +..+.++|.++|++||+|+||| +..-+..      
T Consensus       514 ~~~I~~ei~~A~~g~~~~I~i~~~~l---------p--------D~~ii~AL~~Aa~rGV~VrLiv-rg~c~l~------  569 (687)
T 1xdp_A          514 YEMVDREIANAQQGLPSGITLKLNNL---------V--------DKGLVDRLYAASSSGVPVNLLV-RGMCSLI------  569 (687)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEEESCB---------C--------CHHHHHHHHHHHHTTCCEEEEE-SSCBCBC------
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEeCCC---------C--------CHHHHHHHHHHHHCCCEEEEEE-ecccccC------
Confidence            3444555666886    799987732         2        2689999999999999999998 5432211      


Q ss_pred             CCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccC
Q 008859          320 PGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYD  399 (551)
Q Consensus       320 ~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~D  399 (551)
                      .|+.+.          ..++.|.          +++     +.+.. |-|+....+.     +.-.+|+|+.|+...-++
T Consensus       570 pgvp~~----------sdni~V~----------s~~-----~r~Le-h~rI~~f~~~-----dd~~~~IGSAN~d~Rsl~  618 (687)
T 1xdp_A          570 PNLEGI----------SDNIRAI----------SIV-----DRYLE-HDRVYIFENG-----GDKKVYLSSADWMTRNID  618 (687)
T ss_dssp             TTCTTT----------STTEEEE----------EEC-----SSSEE-CCCEEEECGG-----GSCEEEEESCCBSHHHHH
T ss_pred             CCCCCC----------CCCEEEE----------Eeh-----hHHhh-CCeEEEEcCC-----CCCEEEEEcCccchhhhh
Confidence            111111          1233332          111     11122 5688888432     112999999999763332


Q ss_pred             CCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHHHHHhhcC
Q 008859          400 TPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQRWRKATK  461 (551)
Q Consensus       400 t~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~rW~~~~~  461 (551)
                      .                                =.-+.+-|..| .+..+...|+..|+...+
T Consensus       619 ~--------------------------------n~Ev~~~I~d~~~~~~l~~~f~~~l~d~~~  649 (687)
T 1xdp_A          619 Y--------------------------------RIEVATPLLDPRLKQRVLDIIDILFSDTVK  649 (687)
T ss_dssp             S--------------------------------EEEEEEECCSHHHHHHHHHHHHHHHTCCSS
T ss_pred             h--------------------------------heeeeEEecCHHHHHHHHHHHHHhhccccc
Confidence            1                                13566777775 677888899999986544

>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5

Probab=93.26  E-value=0.092  Score=51.22  Aligned_cols=51  Identities=24%  Similarity=0.067  Sum_probs=42.7

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDD  308 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~  308 (551)
                      +...+.+.+.|++|++.|++..|.           +      .-..|.+.|+++++|||.|+|+++..
T Consensus         9 e~Ii~r~~e~I~~A~~el~lsi~~-----------e------~l~~l~~~L~~A~~rGV~V~liv~~~   59 (233)
T 2f5t_X            9 DEAIEMFRESLYSAKNEVIVVTPS-----------E------FFETIREDLIKTLERGVTVSLYIDKI   59 (233)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECG-----------G------GHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             HHHHHHHHHHHHHhhhEEEEEeCH-----------H------HHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            457788999999999999998872           1      13689999999999999999999653

>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}

Probab=92.17  E-value=0.29  Score=50.29  Aligned_cols=48  Identities=25%  Similarity=0.130  Sum_probs=40.1

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEE
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLV  305 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLv  305 (551)
                      +...+.+.+.|.+|+++|++..|.           .      .-..+.+.|+++++|||+|++++
T Consensus       118 ~~I~~ri~eli~~A~~eI~i~~~~-----------~------~l~~l~~~L~~a~~RGV~Vrvi~  165 (342)
T 3qph_A          118 DEAIEMFRESLYSAKNEVIVVTPS-----------E------FFETIREDLIKTLERGVTVSLYI  165 (342)
T ss_dssp             HHHHHHHHHHHHHCSSEEEEEECH-----------H------HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhhheEEEEEeCH-----------H------HHHHHHHHHHHHHhCCCEEEEEE
Confidence            457888999999999999999872           0      02477889999999999999997

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=88.35  E-value=4.3  Score=38.94  Aligned_cols=39  Identities=13%  Similarity=0.328  Sum_probs=32.4

Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDD  130 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d  130 (551)
                      ..++|.|.-.+.+|.|+|++.+.++..   ...|.|+++...
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S  118 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRS  118 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECC
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEec
Confidence            557888888899999999999998875   467999998654

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=83.54  E-value=5  Score=36.45  Aligned_cols=98  Identities=12%  Similarity=0.123  Sum_probs=68.7

Q ss_pred             cEEEEEECCeeeEEeeecCCCCCCeEeeEEEEeecCC--------CCeEEEEEEecCCCCCceeEEEEeecccccc-cce
Q 008859           82 PYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHP--------LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT-GEL  152 (551)
Q Consensus        82 pYvtV~l~~~~v~rTrvi~ns~nP~WnE~F~i~vah~--------~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~-g~~  152 (551)
                      .||++++-.-...-|-++. +.+|.+|-+-.+.|...        ...+.+++.......-..||++.|++.+++. .+.
T Consensus        44 tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~  122 (156)
T 2yrb_A           44 TFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGR  122 (156)
T ss_dssp             EEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSC
T ss_pred             EEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCc
Confidence            4666666554445676665 78899998877777554        2457777776543225799999999999984 455


Q ss_pred             eeeEEEccCCCCCCCCCCceEEEEeeeec
Q 008859          153 ISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (551)
Q Consensus       153 i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p  181 (551)
                      +.+-.+|.+..|.. ..-|.|.+.|++..
T Consensus       123 i~g~~~L~g~~g~~-~~~G~LeywiRL~~  150 (156)
T 2yrb_A          123 IFCTASLIGTKGDI-PNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEEEEECBSSSCC-TTSEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCCc-ceEEEEEEEEEEec
Confidence            88888998877742 24688888888743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	551
d1v0wa1	258	d.136.1.2 (A:6-263) Phospholipase D {Streptomyces	3e-11
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-10
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-09
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	3e-08
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	9e-08
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-07
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	6e-07
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-06
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-06
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-05
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	4e-05
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	4e-05
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	5e-05
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-05
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	0.004

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

 Score = 61.6 bits (149), Expect = 3e-11
 Identities = 32/237 (13%), Positives = 58/237 (24%), Gaps = 64/237 (27%)

Query: 228 PEIPLDGGKLYKPGT--CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDL 285
           P    D     + GT      +   I  A   + I   + F                   
Sbjct: 48  PGCWGDDKCADRVGTKRLLAKMTENIGNATRTVDISTLAPFPNGAFQDA----------- 96

Query: 286 TLGELLKYKSEEGVRV-LLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA 344
            +   LK  + +G ++ + ++      +          M     + +             
Sbjct: 97  -IVAGLKESAAKGNKLKVRILVGAAPVYH---------MNVIPSKYRDELTAKLGKAAEN 146

Query: 345 PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404
                + ++  K         +H K ++VD Q        +A  GGI+     Y    H 
Sbjct: 147 ITLNVASMTTSK----TAFSWNHSKILVVDGQ--------SALTGGINSWKDDYLDTTH- 193

Query: 405 LFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461
                                      P  D+   L GPAA       +  W    +
Sbjct: 194 ---------------------------PVSDVDLALTGPAAGSAGRYLDTLWTWTCQ 223

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.4 bits (138), Expect = 1e-10
 Identities = 29/168 (17%), Positives = 52/168 (30%), Gaps = 48/168 (28%)

Query: 16  HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKS 75
           HG L++ ++ A+ L + D ++                                       
Sbjct: 9   HGTLEVVLVSAKGLEDADFLN--------------------------------------- 29

Query: 76  KIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA- 134
                DPYV +                  P WNE F   ++   + L+ ++ D DV    
Sbjct: 30  ---NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTED 86

Query: 135 QIIGTAAIPAHTIAT-GELISRWYDIIAPSGSPPKPGASIQLELKFTP 181
             +G A IP   +   G +    Y+++       +    I + L F P
Sbjct: 87  DAVGEATIPLEPVFVEGSIPPTAYNVVKDE----EYKGEIWVALSFKP 130

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 79  TSDPYVTVVVPQATV--ARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQ 135
           T DPYV + +        RTR   N   PVWNE F   L     N LEI + D +    +
Sbjct: 26  TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPC 182
            +GTA     ++  GE     +               + LE+     
Sbjct: 86  TLGTATFTVSSMKVGEKKEVPFIF--------NQVTEMVLEMSLEVA 124

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 19/173 (10%), Positives = 45/173 (26%), Gaps = 41/173 (23%)

Query: 13  IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKII 72
           +  +G L +KI  A  L                                         + 
Sbjct: 2   VVFNGLLKIKICEAVSLKPTAWSLRDA-------------------------------VG 30

Query: 73  RKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVF 132
            + +    DPY+ + V  + + +T   + +  P W++ F   + +          D  + 
Sbjct: 31  PRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIG 90

Query: 133 GAQIIGTAAIPAHTI--ATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCD 183
               +    I    +          W D+        +P   + + +  +   
Sbjct: 91  YDDFVANCTIQFEELLQNGSRHFEDWIDL--------EPEGKVYVIIDLSGSS 135

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 12/111 (10%)

Query: 79  TSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIG 138
             + YVT+ V Q   + T  ++ S +P W + F   +      L ++V +  +    ++G
Sbjct: 19  KFNTYVTLKV-QNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVG 76

Query: 139 TAAIPAHTI--ATGELISRWYDIIAPS--------GSPPKPGASIQLELKF 179
           T  IP  TI  +  E    W  + + +        G+       I L+  F
Sbjct: 77  TVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 9e-08
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 12/91 (13%)

Query: 79  TSDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHPLS----NLEIQVKDDD 130
             +PYV +            RT+ +K + EP WN+ F     H        LEI + D  
Sbjct: 34  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 93

Query: 131 VFGA---QIIGTAAIPAHTIATGELISRWYD 158
                  + +G   I   T    +    WY 
Sbjct: 94  RVREEESEFLGEILIELETALLDD-EPHWYK 123

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 65  VRHTSKIIRKSKIITSDPYVTVVVPQA----TVARTRVLKNSQEPVWNEHFNIPLAHPLS 120
           VR    ++       SDPYV + +       +  +T+ +K S  P WNE F   L     
Sbjct: 21  VRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK 80

Query: 121 N--LEIQVKDDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPS 163
           +  L +++ D D+      +G+ +     +     +  W+ +++  
Sbjct: 81  DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 125

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 6e-07
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 79  TSDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAH---PLSNLEIQVKDDDVFG 133
           TSDPYV V +         T+V + +  PV+NE F   + +       L + V D D F 
Sbjct: 54  TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDI 159
              IIG   +P +T+  G +   W D+
Sbjct: 114 KHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 74  KSKIITSDPYVTV----VVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
           +++   S P+  V     +           K +  P W   F+  +      ++I +   
Sbjct: 18  QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV-IQIVLMRA 76

Query: 130 DV--FGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
                    +G + +             W D+        +P A + + +++
Sbjct: 77  AEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL--------QPQAKVLMCVQY 120

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 81  DPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG 133
           DPYV V +     + +  +T V K +   V+NE F   +        ++E  V D +   
Sbjct: 37  DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS 96

Query: 134 A-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
             ++IG   + A   A G     W +I       
Sbjct: 97  RNEVIGRLVLGAT--AEGSGGGHWKEICDFPRRQ 128

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 47/164 (28%)

Query: 17  GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSK 76
           G L +K+++A  L   D                                           
Sbjct: 6   GILQVKVLKAADLLAADFSG---------------------------------------- 25

Query: 77  IITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGA-Q 135
              SDP+  ++       +T  +  +  P WN+ F  P+      LE+ V D+D      
Sbjct: 26  --KSDPFC-LLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD 82

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
            +G  AIP  +I  G+     Y +          G  I LE+  
Sbjct: 83  FLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKG-VIYLEMDL 123

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 74  KSKIITSDPYVTV----VVPQATVARTRVLKNSQ-EPVWNEHFNIPLAHP-LSNLEIQVK 127
           K+K    DP V V    V       +T V+ N+   P W+  F   +  P L+ +   V+
Sbjct: 21  KNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE 80

Query: 128 DDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPG 170
           D D       IG + IP +++  G    R   +++ +G      
Sbjct: 81  DYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSA 121

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 71  IIRKSKIITSDPYVTVVV----PQATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLE 123
           +        SDP+V + +     +    +T++ K +  P +NE F   + H      +L+
Sbjct: 27  LAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLD 86

Query: 124 IQVKDDDVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
           I V D D+  +   IG   +       GE +  WY+ +      
Sbjct: 87  ISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKK 128

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.4 bits (96), Expect = 5e-05
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 34/157 (21%)

Query: 14  YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIR 73
           Y  G+L + I++AR L   D                    P  + +      +       
Sbjct: 15  YDLGNLIIHILQARNLVPRDNNG--------------YSDPFVKVYLLPGRGQVMVVQNA 60

Query: 74  KSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLS----NLEIQVKDD 129
            ++                  RT+ ++ S  P WN+                LE+ V D 
Sbjct: 61  SAEYKR---------------RTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDY 105

Query: 130 DVFGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGS 165
           D F +   +G   I   + +  +   RWY +   + S
Sbjct: 106 DRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTES 142

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 79  TSDPYVTVVVP----QATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDV 131
            SDPYV + +     +    +T + KN+  P +NE F+  +         + + V D D 
Sbjct: 45  LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 104

Query: 132 FGA-QIIGTAAIPAHTIATGELISRWYDIIAPSGSP 166
            G    IG   +  +  +TG  +  W D++A    P
Sbjct: 105 IGKNDAIGKVFVGYN--STGAELRHWSDMLANPRRP 138

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 74  KSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG 133
           K       PYV V V   +  +T    N+  P W +   + +    S L  +V       
Sbjct: 21  KKNWFGPSPYVEVTVDGQSK-KTEKCNNTNSPKWKQPLTVIVTPV-SKLHFRVWSHQTLK 78

Query: 134 A-QIIGTAAIPAHTI-----ATGELISRWYDIIAPSGSPPKPGASIQLEL 177
           +  ++GTAA+  +          E +     +          G  + + L
Sbjct: 79  SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIG-DLSICL 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	551
d1v0wa1	258	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.92
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.83
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.82
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.79
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.77
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.73
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.72
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.72
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.7
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.7
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.69
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.65
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.6
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.6
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.59
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.58
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.57
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.54
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.52
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.48
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.44
d1byra_	152	Nuclease Nuc {Salmonella typhimurium [TaxId: 90371	99.4
d1v0wa2	246	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.34
d2o8ra3	188	Polyphosphate kinase, PPK {Porphyromonas gingivali	93.99
d1xdpa3	187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	92.86
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	90.73

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

Probab=99.92  E-value=4.6e-26  Score=226.28  Aligned_cols=157  Identities=19%  Similarity=0.197  Sum_probs=113.9

Q ss_pred             cchHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcC--CeEEEEEeCCCCccCccCCC
Q 008859          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGVK  318 (551)
Q Consensus       241 ~~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~G--V~V~iLvwD~~~s~~~~~~~  318 (551)
                      +++|++|.++|++||++|+|++|++.++-.            .+..|.++|+++|+||  |+||||+ |..+|...    
T Consensus        63 ~~~~~~~~~~I~~A~~~I~i~~~~~~pd~~------------~~~~i~~aL~~aA~rG~~V~VriL~-d~~gs~~~----  125 (258)
T d1v0wa1          63 KRLLAKMTENIGNATRTVDISTLAPFPNGA------------FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHM----  125 (258)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEEESSCCCHH------------HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CC----
T ss_pred             HHHHHHHHHHHHHhccEEEEEEEEEcCCch------------HHHHHHHHHHHHHhCCCCeEEEEEe-CCcccccc----
Confidence            678999999999999999999996532211            1368999999999999  9999997 88877541    


Q ss_pred             CCCcccCCcHHHHhHhcCC----CcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeecc
Q 008859          319 TPGVMATHDEETKKFFKHS----SVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC  394 (551)
Q Consensus       319 ~~g~~~t~~~~~~~~~~~~----~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~  394 (551)
                           .......++.+...    ++.+.+....+.        .....+.+||+|++|||++        +|||||+||+
T Consensus       126 -----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~rnH~Ki~VVDg~--------~a~vGG~Ni~  184 (258)
T d1v0wa1         126 -----NVIPSKYRDELTAKLGKAAENITLNVASMT--------TSKTAFSWNHSKILVVDGQ--------SALTGGINSW  184 (258)
T ss_dssp             -----CCHHHHHHHHHHHHHGGGGGGEEEEEEEEC--------SBTTTTBCBCCCEEEETTT--------EEEEESCCCC
T ss_pred             -----ccchHHHHHHHHHhccceeecccccccccc--------ccccccccccceEEEEcCC--------EEEECCcccC
Confidence                 00111233333322    222221100000        0123356899999999998        9999999999


Q ss_pred             ccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHHHHHHHHHHHHHhhcCCc
Q 008859          395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLT  463 (551)
Q Consensus       395 ~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~dv~~~F~~rW~~~~~~~  463 (551)
                      +++|+..                            ..||||+|++|+||+|.++...|.++|+.+++++
T Consensus       185 ~~~~~~~----------------------------~~~w~D~~~~v~Gp~v~~~~~~F~~~W~~~~~e~  225 (258)
T d1v0wa1         185 KDDYLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNK  225 (258)
T ss_dssp             HHHHTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCC----------------------------CCCeeeeEEEEECHHHHHHHHHHHHHHHHHhCCC
Confidence            9888741                            2379999999999999999999999999988763

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.83  E-value=1.5e-20  Score=168.39  Aligned_cols=131  Identities=17%  Similarity=0.392  Sum_probs=106.3

Q ss_pred             eEEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCe
Q 008859           12 VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQA   91 (551)
Q Consensus        12 ~~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~   91 (551)
                      |.+++|.|.|+|++|++|++++.....   ...                            +......+||||+|.+++.
T Consensus         1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~---~~~----------------------------~~~~~~~~DPYv~v~l~~~   49 (136)
T d1gmia_           1 MVVFNGLLKIKICEAVSLKPTAWSLRD---AVG----------------------------PRPQTFLLDPYIALNVDDS   49 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC----CC----------------------------SSCCCCCCCEEEEEEETTE
T ss_pred             CccEEEEEEEEEEEeECCCcccccccc---ccc----------------------------ccCCCCCcCcEEEEEeCCC
Confidence            457999999999999999987642210   000                            0111224899999999999


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeeccccccc--ceeeeEEEccCCCCCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATG--ELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g--~~i~~w~~Ll~~~gkp~k  168 (551)
                      ++.||++++++.||.|||+|.|.+.. ...|+|+|+|.+.++ +++||.+.|+++++...  ...+.|++|        +
T Consensus        50 ~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L--------~  120 (136)
T d1gmia_          50 RIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL--------E  120 (136)
T ss_dssp             EEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC--------B
T ss_pred             cCcEeeEEcCCCCccCccEEEEEEec-CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC--------C
Confidence            98999999999999999999999965 468999999999998 79999999999999743  457789998        2


Q ss_pred             CCceEEEEeeeecc
Q 008859          169 PGASIQLELKFTPC  182 (551)
Q Consensus       169 ~~G~L~lsl~f~p~  182 (551)
                      +.|+|++++++.+.
T Consensus       121 p~G~v~l~v~~~~~  134 (136)
T d1gmia_         121 PEGKVYVIIDLSGS  134 (136)
T ss_dssp             SSCEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEeC
Confidence            46999999999885

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3e-20  Score=163.84  Aligned_cols=118  Identities=25%  Similarity=0.418  Sum_probs=102.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      |.|.|+|++|++|+++|..+.                                          +||||+|.+++.+ .||
T Consensus         6 G~L~V~v~~A~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~-~~T   42 (126)
T d2ep6a1           6 GILQVKVLKAADLLAADFSGK------------------------------------------SDPFCLLELGNDR-LQT   42 (126)
T ss_dssp             EEEEEEEEEEESCCCSSSSSC------------------------------------------CCEEEEEEETTEE-EEC
T ss_pred             EEEEEEEEEeECCCCCCCCCC------------------------------------------cCeEEEEEcCCeE-EEE
Confidence            899999999999999887654                                          8999999998876 699


Q ss_pred             eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceEEE
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQL  175 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L~l  175 (551)
                      ++++++.||.|||+|.|.+..+...|.|+|||.+.++ +++||++.|++.++..++  ..|+.|.....+ .+..|+|+|
T Consensus        43 ~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~-~~~~G~i~l  119 (126)
T d2ep6a1          43 HTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLE-QAFKGVIYL  119 (126)
T ss_dssp             CCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTT-SCCSSEEEE
T ss_pred             EeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcceEEEEEEEHHHCCCCC--ceEEEccccCCC-CceeEEEEE
Confidence            9999999999999999999988888999999999998 799999999999998765  478887544433 235699999


Q ss_pred             Eeeee
Q 008859          176 ELKFT  180 (551)
Q Consensus       176 sl~f~  180 (551)
                      +|+|.
T Consensus       120 ~~~~i  124 (126)
T d2ep6a1         120 EMDLI  124 (126)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99885

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=1.9e-19  Score=160.69  Aligned_cols=121  Identities=25%  Similarity=0.513  Sum_probs=103.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r   95 (551)
                      +|.|.|+|++|++|+++|.++.                                          +||||++.+.+.+ .+
T Consensus         9 ~G~L~V~v~~a~~L~~~d~~g~------------------------------------------~Dpyv~v~~~~~~-~~   45 (136)
T d1wfja_           9 HGTLEVVLVSAKGLEDADFLNN------------------------------------------MDPYVQLTCRTQD-QK   45 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCS------------------------------------------SCCCEEEESSSCE-EE
T ss_pred             cEEEEEEEEEeeCCCCCCCCCC------------------------------------------CCccEEEEEeeee-EE
Confidence            5999999999999999887664                                          8999999998876 48


Q ss_pred             eeecCC-CCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccc-cceeeeEEEccCCCCCCCCCCce
Q 008859           96 TRVLKN-SQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT-GELISRWYDIIAPSGSPPKPGAS  172 (551)
Q Consensus        96 Trvi~n-s~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~-g~~i~~w~~Ll~~~gkp~k~~G~  172 (551)
                      |+++++ +.||.|||+|.|.+......|.|+|||.+.++ +++||.+.||+.++.. +.....|+++.. +++   ..|+
T Consensus        46 t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~-~~~---~~G~  121 (136)
T d1wfja_          46 SNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK-DEE---YKGE  121 (136)
T ss_dssp             CCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE-TTE---EEEE
T ss_pred             EEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC-CCc---cCEE
Confidence            888875 89999999999999988888999999999998 7899999999999864 455577999853 233   4599


Q ss_pred             EEEEeeeeccC
Q 008859          173 IQLELKFTPCD  183 (551)
Q Consensus       173 L~lsl~f~p~~  183 (551)
                      |+|++.|.|..
T Consensus       122 i~l~l~~~p~~  132 (136)
T d1wfja_         122 IWVALSFKPSG  132 (136)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEeCC
Confidence            99999999864

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.2e-19  Score=153.83  Aligned_cols=120  Identities=23%  Similarity=0.382  Sum_probs=99.2

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--eeeE
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--ATVA   94 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--~~v~   94 (551)
                      +.|.|+|++|++|++....     .++                                  .++||||++.+.+  ....
T Consensus         3 ~~l~V~v~~a~~L~~~~~~-----d~~----------------------------------~~~Dpyv~v~l~~~~~~~~   43 (126)
T d1rlwa_           3 HKFTVVVLRATKVTKGAFG-----DML----------------------------------DTPDPYVELFISTTPDSRK   43 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHH-----HHH----------------------------------CCCCEEEEEECTTSTTCCE
T ss_pred             cEEEEEEEEccCCCCcccc-----ccC----------------------------------CCCCcEEEEEECCccccee
Confidence            5799999999999864221     001                                  1289999999965  3457


Q ss_pred             EeeecCCCCCCeEeeEEEEeecCCC-CeEEEEEEecCCCCCceeEEEEeecccccccceeeeEEEccCCCCCCCCCCceE
Q 008859           95 RTRVLKNSQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASI  173 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~~G~L  173 (551)
                      ||++++++.||.|||+|.|.+.... ..|.|+|||.+..++++||.+.|+++++..|+..+.||+|. +     ...|+|
T Consensus        44 ~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~-~-----~~~g~i  117 (126)
T d1rlwa_          44 RTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-Q-----VTEMVL  117 (126)
T ss_dssp             ECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-T-----TEEEEE
T ss_pred             EeeecCCCccceeceeeeecccCcccCcEEEEEEECCCCCCCeEEEEEEEHHHccCCCeEEEEEEcc-C-----CCeEEE
Confidence            9999999999999999999997765 46899999999989999999999999999999999999992 2     135889


Q ss_pred             EEEeeeec
Q 008859          174 QLELKFTP  181 (551)
Q Consensus       174 ~lsl~f~p  181 (551)
                      ++++++.+
T Consensus       118 ~~~l~~~~  125 (126)
T d1rlwa_         118 EMSLEVAS  125 (126)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEEEe
Confidence            99998876

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.2e-17  Score=148.12  Aligned_cols=105  Identities=23%  Similarity=0.404  Sum_probs=89.7

Q ss_pred             EEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----
Q 008859           14 YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----   89 (551)
Q Consensus        14 ~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~----   89 (551)
                      +-.+.|.|+|++|++|+++|..+.                                          +||||+|.+.    
T Consensus        12 ~~~~~L~V~V~~a~~L~~~d~~g~------------------------------------------~DpYv~v~l~~~~~   49 (132)
T d1a25a_          12 IDREVLIVVVRDAKNLVPMDPNGL------------------------------------------SDPYVKLKLIPDPK   49 (132)
T ss_dssp             ESSSEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEESCTT
T ss_pred             ecCCEEEEEEEeeeCCCCCCCCCC------------------------------------------cCeEEEEEEccCCC
Confidence            345889999999999999886543                                          8999999982    


Q ss_pred             CeeeEEeeecCCCCCCeEeeEEEEeecCC--CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccC
Q 008859           90 QATVARTRVLKNSQEPVWNEHFNIPLAHP--LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIA  161 (551)
Q Consensus        90 ~~~v~rTrvi~ns~nP~WnE~F~i~vah~--~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~  161 (551)
                      +....||++++++.||.|||+|.|.+...  ...|.|+|||.|.++ +++||.+.|++.++..+ .+++||+|++
T Consensus        50 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          50 SESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             CSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            23457999999999999999999998765  346999999999998 78999999999998754 5789999965

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.2e-17  Score=146.98  Aligned_cols=121  Identities=19%  Similarity=0.293  Sum_probs=96.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEE
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVAR   95 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~r   95 (551)
                      -+.|.|+|++|++|++.+..+.                                          +||||+|.+++.. .|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~------------------------------------------~dpyv~v~~~~~~-~k   41 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFG------------------------------------------PSPYVEVTVDGQS-KK   41 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCC------------------------------------------CCEEEEEEETTEE-EE
T ss_pred             ceEEEEEEEEeECCCcCCCCCC------------------------------------------cCeEEEEEECCeE-Ee
Confidence            4889999999999998765543                                          8999999999876 69


Q ss_pred             eeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCC-CceeEEEEeecccccc---cce--eeeEEEccCCCCCCCCC
Q 008859           96 TRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIAT---GEL--ISRWYDIIAPSGSPPKP  169 (551)
Q Consensus        96 Trvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~---g~~--i~~w~~Ll~~~gkp~k~  169 (551)
                      |++++++.||.|||.|.|++.. ...|.|+|||.+.++ +++||.+.|++.++..   +..  ...|+.+... .++.+.
T Consensus        42 T~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-~~~~~~  119 (133)
T d2nq3a1          42 TEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-KEPTET  119 (133)
T ss_dssp             CCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-SCTTSE
T ss_pred             eEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-CCCceE
Confidence            9999999999999999999875 458999999999998 7999999999998853   333  3334444332 344456


Q ss_pred             CceEEEEeeeec
Q 008859          170 GASIQLELKFTP  181 (551)
Q Consensus       170 ~G~L~lsl~f~p  181 (551)
                      .|+|.|.|.+..
T Consensus       120 ~G~L~v~l~~~~  131 (133)
T d2nq3a1         120 IGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEEEEESEE
T ss_pred             EEEEEEEEeeEE
Confidence            799999888764

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=4.8e-17  Score=144.06  Aligned_cols=116  Identities=21%  Similarity=0.336  Sum_probs=94.4

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECCeeeEEe
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVART   96 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~~~v~rT   96 (551)
                      +.|.|+|++|++|+.+|   .                                          +||||+|.+++.+ .+|
T Consensus         2 ~~L~V~v~~a~~l~~~~---~------------------------------------------~dpYv~l~~~~~k-~~T   35 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---K------------------------------------------FNTYVTLKVQNVK-STT   35 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---G------------------------------------------CEEEEEEEETTEE-EEC
T ss_pred             eEEEEEEEEEECCCCCC---C------------------------------------------cCeEEEEEeCCEE-EEE
Confidence            57999999999998754   1                                          7999999999876 699


Q ss_pred             eecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccccc--ceeeeEEEccCCC--------CCC
Q 008859           97 RVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATG--ELISRWYDIIAPS--------GSP  166 (551)
Q Consensus        97 rvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~g--~~i~~w~~Ll~~~--------gkp  166 (551)
                      .++++ .||.|||+|.|++..+...|.|+|||.+.+++++||.+.||++++..+  +....||+|..+.        |..
T Consensus        36 ~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~  114 (128)
T d2cjta1          36 IAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTK  114 (128)
T ss_dssp             CCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCS
T ss_pred             EEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCcCCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeee
Confidence            88865 499999999999999988999999999999999999999999998743  3466899994322        222


Q ss_pred             CCCCceEEEEeee
Q 008859          167 PKPGASIQLELKF  179 (551)
Q Consensus       167 ~k~~G~L~lsl~f  179 (551)
                      ......|+++++|
T Consensus       115 ~~~~~~~ll~~~~  127 (128)
T d2cjta1         115 DPTFHRILLDAHF  127 (128)
T ss_dssp             CCCCCEEEEEEEE
T ss_pred             cCCCcEEEEEEEc
Confidence            2345678888877

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=7.1e-17  Score=143.09  Aligned_cols=120  Identities=23%  Similarity=0.456  Sum_probs=94.7

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----Cee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QAT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~----~~~   92 (551)
                      ..|.|+|++|++||.++....                                        ..+||||+|.+.    +..
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~----------------------------------------~~~DPyV~v~l~g~~~~~~   43 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKN----------------------------------------SIVDPKVIVEIHGVGRDTG   43 (131)
T ss_dssp             EEEEEEEEEEESCCCCC---------------------------------------------CCCEEEEEEEESSTTTCE
T ss_pred             EEEEEEEEEeeCCCCCCCCCC----------------------------------------CCcCeEEEEEEccCCCCcE
Confidence            368999999999986543211                                        028999999993    245


Q ss_pred             eEEeeecCC-CCCCeEeeEEEEeecCCC-CeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCCC
Q 008859           93 VARTRVLKN-SQEPVWNEHFNIPLAHPL-SNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKP  169 (551)
Q Consensus        93 v~rTrvi~n-s~nP~WnE~F~i~vah~~-~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k~  169 (551)
                      ..||+++++ +.||.|||+|.|.+..+. ..|.|+|+|.|.++ +++||.+.||++++..|   ..|++|.+..|++. .
T Consensus        44 ~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~-~  119 (131)
T d1qasa2          44 SRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQH-P  119 (131)
T ss_dssp             EEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEE-E
T ss_pred             EEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEecCCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCC-C
Confidence            579998876 579999999999887653 46899999999998 78999999999999877   46999999888865 3


Q ss_pred             CceEEEEeeee
Q 008859          170 GASIQLELKFT  180 (551)
Q Consensus       170 ~G~L~lsl~f~  180 (551)
                      .+.|.|.+.+.
T Consensus       120 ~~~L~v~i~~~  130 (131)
T d1qasa2         120 SATLFVKISIQ  130 (131)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CCEEEEEEEEE
Confidence            56777777654

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=5.5e-17  Score=145.80  Aligned_cols=103  Identities=33%  Similarity=0.547  Sum_probs=89.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--Ceee
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATV   93 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~v   93 (551)
                      .+.|.|+|++|++|++++..+.                                          +||||+|.+.  +...
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~------------------------------------------~dpyV~v~l~~~~~~~   70 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGT------------------------------------------SDPYVKVFLLPDKKKK   70 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETTCCSC
T ss_pred             CCEEEEEEEEccCCCCCCCCCC------------------------------------------CCeEEEEEEcCCCCee
Confidence            3789999999999998876543                                          8999999983  3455


Q ss_pred             EEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEcc
Q 008859           94 ARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDII  160 (551)
Q Consensus        94 ~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll  160 (551)
                      .||++++++.||.|||+|.|.+...   ...|.|+|||.+.++ +++||.+.|++.++..++..+.||+|.
T Consensus        71 ~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  141 (143)
T d1rsya_          71 FETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ  141 (143)
T ss_dssp             EECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred             EEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence            7999999999999999999987654   457999999999998 789999999999999888899999984

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.7e-17  Score=148.52  Aligned_cols=108  Identities=28%  Similarity=0.407  Sum_probs=90.9

Q ss_pred             EEEeeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC--
Q 008859           13 IYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ--   90 (551)
Q Consensus        13 ~~lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~--   90 (551)
                      .|-.|.|.|+|++|++|+++|..+.                                          +||||+|.+..  
T Consensus        14 ~y~~~~L~V~V~~A~~L~~~d~~g~------------------------------------------~DpyV~v~l~~~~   51 (142)
T d1rh8a_          14 NYDLGNLIIHILQARNLVPRDNNGY------------------------------------------SDPFVKVYLLPGR   51 (142)
T ss_dssp             EEETTEEEEEEEEEESCCCCSSSSC------------------------------------------SCCEEEEEETTSS
T ss_pred             EEeCCEEEEEEEEeECCCCcCCCCC------------------------------------------CCcCEEEEEecCc
Confidence            3456999999999999998886553                                          89999999842  


Q ss_pred             -----------eeeEEeeecCCCCCCeEeeEEEEeecC----CCCeEEEEEEecCCCC-CceeEEEEeecccccccceee
Q 008859           91 -----------ATVARTRVLKNSQEPVWNEHFNIPLAH----PLSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELIS  154 (551)
Q Consensus        91 -----------~~v~rTrvi~ns~nP~WnE~F~i~vah----~~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~  154 (551)
                                 ....||++++++.||.|||+|.|.+-.    ....|.|+|||.+.++ +++||.+.|++.++..++...
T Consensus        52 ~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~  131 (142)
T d1rh8a_          52 GQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP  131 (142)
T ss_dssp             CCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCC
T ss_pred             ccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCce
Confidence                       112589999999999999999997433    2457999999999998 789999999999999888899


Q ss_pred             eEEEccCC
Q 008859          155 RWYDIIAP  162 (551)
Q Consensus       155 ~w~~Ll~~  162 (551)
                      +||+|.+.
T Consensus       132 ~W~~L~~~  139 (142)
T d1rh8a_         132 RWYPLKEQ  139 (142)
T ss_dssp             EEEECBCC
T ss_pred             EEEECcCc
Confidence            99999654

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=2.6e-16  Score=139.14  Aligned_cols=103  Identities=26%  Similarity=0.417  Sum_probs=84.6

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--CeeeE
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATVA   94 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~v~   94 (551)
                      +.|.|+|++|++|++++..+.                                          +||||+|.+.  +....
T Consensus        18 ~~L~V~V~~a~~L~~~~~~g~------------------------------------------~dpyv~v~l~~~~~~~~   55 (130)
T d1dqva1          18 DQLVVRILQALDLPAKDSNGF------------------------------------------SDPYVKIYLLPDRKKKF   55 (130)
T ss_dssp             CEEEEEEEEEECCCCCSTTSC------------------------------------------CCEEEEEECTTSTTSCE
T ss_pred             CEEEEEEEeeeCCccccCCCC------------------------------------------cceEEEEEEccCCCceE
Confidence            789999999999998876543                                          8999999984  34457


Q ss_pred             EeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccc-c-cceeeeEEEccC
Q 008859           95 RTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-T-GELISRWYDIIA  161 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~-~-g~~i~~w~~Ll~  161 (551)
                      ||++++++.||+|||+|.|.+...   ...|.|+|+|.+.++ +++||.+.|++.... . ......|++|++
T Consensus        56 kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          56 QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             ECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             eceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            999999999999999999998654   356999999999988 899999999865433 2 234556999964

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.9e-15  Score=133.53  Aligned_cols=107  Identities=26%  Similarity=0.385  Sum_probs=80.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEE--CC--e
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVV--PQ--A   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l--~~--~   91 (551)
                      .|.|.|+|++|++|+.++..+.                                          +||||+|.+  ++  .
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------------------~dpyvkv~l~~~~~~~   51 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGL------------------------------------------SDPYVKVNLYHAKKRI   51 (138)
T ss_dssp             TTEEEEEEEEEESCC------C------------------------------------------CCEEEEEEEEETTEEE
T ss_pred             CCEEEEEEEEeECCCCCCCCCC------------------------------------------cCEEEEEEEeCCcccC
Confidence            3789999999999998876443                                          899999998  32  3


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSP  166 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp  166 (551)
                      ...||++++++.||.|||+|.|.+...   ...|+|+|+|.+.++ +++||.+.|++...  ++..++|++|+...+++
T Consensus        52 ~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~--~~~~~hW~~ll~~~~k~  128 (138)
T d1w15a_          52 SKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICDFPRRQ  128 (138)
T ss_dssp             EEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC--SHHHHHHHHHHHSTTCC
T ss_pred             ccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhC--CchHHHHHHHHhCCCCe
Confidence            446899999999999999999998764   345899999999988 89999999998764  33345566665554443

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=6.8e-16  Score=137.01  Aligned_cols=108  Identities=28%  Similarity=0.455  Sum_probs=88.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----Ce
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~----~~   91 (551)
                      .|.|.|+|++|++|+.++..+.                                          +||||+|.+.    ..
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~   51 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGY------------------------------------------SDPFVKLWLKPDMGKK   51 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEETC---C
T ss_pred             CCEEEEEEEEEECCCCCCCCCC------------------------------------------cCeEEEEEEEcCCccc
Confidence            3789999999999998765442                                          8999999983    23


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCC
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~  167 (551)
                      ...||++++++.||.|||+|.|.+...   ...|+|+|+|.+.++ +++||.+.|++..+  ++..+.|++|++..+++.
T Consensus        52 ~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~--~~~~~~W~~l~~~~~~~v  129 (137)
T d2cm5a1          52 AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKKI  129 (137)
T ss_dssp             CEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC--HHHHHHHHHHHHCTTCCE
T ss_pred             eeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCcccc--CcchhhhhhHhhCCCCee
Confidence            446999999999999999999998654   356999999999987 88999999999865  345677998877666653

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.5e-15  Score=130.64  Aligned_cols=101  Identities=25%  Similarity=0.437  Sum_probs=79.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC----Ce
Q 008859           16 HGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP----QA   91 (551)
Q Consensus        16 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~----~~   91 (551)
                      .+.|.|+|++|++|+.++..+.                                          +||||+|.+.    +.
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~~~------------------------------------------~dpyVkv~l~~~~~~~   50 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDGRP------------------------------------------RNPYVKIYFLPDRSDK   50 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCC------------------------------------------BCEEEEEEEESSCSGG
T ss_pred             CCEEEEEEEEeECCCCcCCCCC------------------------------------------CCEEEEEEEeCCCCCc
Confidence            4789999999999997764332                                          8999999982    24


Q ss_pred             eeEEeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC---CceeEEEEeecccccccceeeeEEEc
Q 008859           92 TVARTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG---AQIIGTAAIPAHTIATGELISRWYDI  159 (551)
Q Consensus        92 ~v~rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g---~~lIG~v~Ipl~~l~~g~~i~~w~~L  159 (551)
                      ...||++++++.||.|||+|.|. +...   ...|.|+|||.+.++   +++||++.||+.++...+ ..+||+|
T Consensus        51 ~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L  124 (125)
T d2bwqa1          51 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL  124 (125)
T ss_dssp             GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred             cccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeC
Confidence            45799999999999999999996 4433   346999999999874   469999999999987554 3579998

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.3e-15  Score=130.32  Aligned_cols=104  Identities=30%  Similarity=0.449  Sum_probs=84.5

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEEC--CeeeE
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVP--QATVA   94 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~--~~~v~   94 (551)
                      +.|.|+|++|++||.++..+.                                         ++||||+|.+.  +....
T Consensus        22 ~~L~V~V~~a~~L~~~d~~~~-----------------------------------------~~dpyV~v~l~~~~~~~~   60 (138)
T d1ugka_          22 KAFVVNIKEARGLPAMDEQSM-----------------------------------------TSDPYIKMTILPEKKHKV   60 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTT-----------------------------------------BCEEEEEEEEETTTCSEE
T ss_pred             CEEEEEEEEecCCCCCCCCCC-----------------------------------------ccceEEEEEEcCCCCEeE
Confidence            789999999999998775442                                         27999999993  34457


Q ss_pred             EeeecCCCCCCeEeeEEEEe-ecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccc-ccceeeeEEEccC
Q 008859           95 RTRVLKNSQEPVWNEHFNIP-LAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA-TGELISRWYDIIA  161 (551)
Q Consensus        95 rTrvi~ns~nP~WnE~F~i~-vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~-~g~~i~~w~~Ll~  161 (551)
                      ||++++++.||.|||+|.|. +...   ...|+|+|+|.+.++ +++||.+.|++.++. ..+.+..|..++.
T Consensus        61 kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~  133 (138)
T d1ugka_          61 KTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             ECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             eCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccC
Confidence            99999999999999999997 4332   346999999999998 899999999999985 4445667777643

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-14  Score=129.49  Aligned_cols=82  Identities=21%  Similarity=0.351  Sum_probs=71.9

Q ss_pred             CCcEEEEEECC---eeeEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccce
Q 008859           80 SDPYVTVVVPQ---ATVARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGEL  152 (551)
Q Consensus        80 sDpYvtV~l~~---~~v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~  152 (551)
                      +||||+|.+.+   ....||++++++.||.|||+|.|.+...   ...|.|+|+|.+.++ +++||.+.|++.++..++.
T Consensus        44 ~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~  123 (138)
T d1wfma_          44 CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLG  123 (138)
T ss_dssp             CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTT
T ss_pred             cCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCC
Confidence            89999999942   3457899999999999999999998764   456999999999998 8999999999999987888


Q ss_pred             eeeEEEccC
Q 008859          153 ISRWYDIIA  161 (551)
Q Consensus       153 i~~w~~Ll~  161 (551)
                      .+.|++|..
T Consensus       124 ~~~W~~L~~  132 (138)
T d1wfma_         124 AAQWGELKT  132 (138)
T ss_dssp             CCEEEECCC
T ss_pred             ceEeEeCCC
Confidence            899999954

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.4e-14  Score=130.46  Aligned_cols=101  Identities=28%  Similarity=0.474  Sum_probs=82.8

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~   92 (551)
                      |.|.|+|++|++|+.++..+.                                          +||||+|++..    ..
T Consensus        25 ~~L~V~V~~a~~L~~~~~~~~------------------------------------------~dpyV~v~l~~~~~~~~   62 (157)
T d1uowa_          25 GKLTVVILEAKNLKKMDVGGL------------------------------------------SDPYVKIHLMQNGKRLK   62 (157)
T ss_dssp             TEEEEEEEEEESCCCCSTTSC------------------------------------------CCEEEEEEEEETTEEEE
T ss_pred             CEEEEEEEEEEEcccccCCCC------------------------------------------CCeeEEEEEecCCcccc
Confidence            789999999999998775443                                          89999999842    23


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeeccccc------------ccceeeeE
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIA------------TGELISRW  156 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~------------~g~~i~~w  156 (551)
                      ..+|++++++.||+|||+|.|.+...   ...|.|+|+|.+.++ +++||.+.|++....            .+..+.+|
T Consensus        63 ~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~W  142 (157)
T d1uowa_          63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQW  142 (157)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEE
T ss_pred             ceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEe
Confidence            45899999999999999999998765   346999999999998 899999999997642            23456677


Q ss_pred             EEc
Q 008859          157 YDI  159 (551)
Q Consensus       157 ~~L  159 (551)
                      ++|
T Consensus       143 h~L  145 (157)
T d1uowa_         143 HTL  145 (157)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            776

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.8e-15  Score=136.01  Aligned_cols=109  Identities=28%  Similarity=0.448  Sum_probs=89.6

Q ss_pred             eEEEEEEEEeecCCCCCCCchhhhhcccccccCCCCCCCCccccCCcCcccccccccccCccCCCcEEEEEECC----ee
Q 008859           17 GDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQ----AT   92 (551)
Q Consensus        17 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tsDpYvtV~l~~----~~   92 (551)
                      |.|.|+|++|++|++++..+.                                          +||||+|.+..    ..
T Consensus        20 ~~L~V~V~~a~nL~~~~~~~~------------------------------------------~dpyv~v~l~~~~~~~~   57 (145)
T d1dqva2          20 GLLTVTIIKASNLKAMDLTGF------------------------------------------SDPYVKASLISEGRRLK   57 (145)
T ss_dssp             TEEEEEEEEEESCCCCSSSSC------------------------------------------CCEEEEECCCTTCCTTS
T ss_pred             CEEEEEEEEEeCCCCcCCCCC------------------------------------------cCceEEEEEccCCccce
Confidence            889999999999998775443                                          89999999854    22


Q ss_pred             eEEeeecCCCCCCeEeeEEEEeecCC---CCeEEEEEEecCCCC-CceeEEEEeecccccccceeeeEEEccCCCCCCCC
Q 008859           93 VARTRVLKNSQEPVWNEHFNIPLAHP---LSNLEIQVKDDDVFG-AQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPK  168 (551)
Q Consensus        93 v~rTrvi~ns~nP~WnE~F~i~vah~---~~~l~f~Vkd~d~~g-~~lIG~v~Ipl~~l~~g~~i~~w~~Ll~~~gkp~k  168 (551)
                      ..||++++++.||.|||+|.|.+...   ...|.|+|+|.+.++ +++||.+.|+++.+. .+....|++|+...+++..
T Consensus        58 ~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~l~~~p~~~i~  136 (145)
T d1dqva2          58 KRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEMLANPRKPVE  136 (145)
T ss_dssp             CEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC-HHHHHHHHTSSSSSSSCSC
T ss_pred             eecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC-chhhHHHHHHHhCCCCeee
Confidence            36899999999999999999988754   356899999999998 789999999998764 3345779998877776653

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=8.5e-14  Score=121.94  Aligned_cols=91  Identities=14%  Similarity=0.291  Sum_probs=77.1

Q ss_pred             CCCcEEEEEECC----eeeEEeeecCCCCCCeEeeEEEEeecCCCCeEEEEEEecCCCCCceeEEEEeeccccc-----c
Q 008859           79 TSDPYVTVVVPQ----ATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIA-----T  149 (551)
Q Consensus        79 tsDpYvtV~l~~----~~v~rTrvi~ns~nP~WnE~F~i~vah~~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~-----~  149 (551)
                      ++||||+|.+.+    .+..+|++++++.||+|||+|.|.+.. ...++|.|+|.|   ++++|.+.|++.++.     .
T Consensus        23 ~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d---d~~~g~~~i~l~~l~~~~~~~   98 (123)
T d1bdya_          23 ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA---EDPMSEVTVGVSVLAERCKKN   98 (123)
T ss_dssp             SCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET---TEEEEEEEEEHHHHHHHHHTT
T ss_pred             CCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc---ccccCccEEehhheeeccccC
Confidence            389999999955    244679999999999999999999965 568999999986   689999999998885     3


Q ss_pred             cceeeeEEEccCCCCCCCCCCceEEEEeeeec
Q 008859          150 GELISRWYDIIAPSGSPPKPGASIQLELKFTP  181 (551)
Q Consensus       150 g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f~p  181 (551)
                      +...+.|++|        +..|+|+++++|..
T Consensus        99 ~~~~~~W~~L--------~~~Gkl~l~v~~f~  122 (123)
T d1bdya_          99 NGKAEFWLDL--------QPQAKVLMCVQYFL  122 (123)
T ss_dssp             TTEEEEEEEC--------BSSCEEEEEEEEEE
T ss_pred             CCcccEEEeC--------CCCEEEEEEEEEec
Confidence            5678899999        24699999999975

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.4e-13  Score=117.88  Aligned_cols=93  Identities=25%  Similarity=0.437  Sum_probs=69.8

Q ss_pred             CCcEEEEEECC-----eeeEEeee--cCCCCCCeEeeE-EEE-eecCC-CCeEEEEEEecCCCCCceeEEEEeecccccc
Q 008859           80 SDPYVTVVVPQ-----ATVARTRV--LKNSQEPVWNEH-FNI-PLAHP-LSNLEIQVKDDDVFGAQIIGTAAIPAHTIAT  149 (551)
Q Consensus        80 sDpYvtV~l~~-----~~v~rTrv--i~ns~nP~WnE~-F~i-~vah~-~~~l~f~Vkd~d~~g~~lIG~v~Ipl~~l~~  149 (551)
                      .||||+|.+-+     .+..+|++  ..|+.||.|||. |.+ .+..+ ...|.|+|+|++   +++||.+.||++.+..
T Consensus        18 ~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d---~~~lG~~~ipl~~l~~   94 (122)
T d2zkmx2          18 VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNS   94 (122)
T ss_dssp             CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCC
T ss_pred             CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC---CCEEEEEEEEcccCcC
Confidence            79999999832     33345554  356899999976 433 34433 456899999986   7999999999999998


Q ss_pred             cceeeeEEEccCCCCCCCCCCceEEEEeee
Q 008859          150 GELISRWYDIIAPSGSPPKPGASIQLELKF  179 (551)
Q Consensus       150 g~~i~~w~~Ll~~~gkp~k~~G~L~lsl~f  179 (551)
                      |   .++++|.+..|++. ..+.|.+.++.
T Consensus        95 G---yR~vpL~~~~g~~l-~~~~L~v~i~~  120 (122)
T d2zkmx2          95 G---YHHLCLHSESNMPL-TMPALFIFLEM  120 (122)
T ss_dssp             E---EEEEEEECTTCCEE-EEEEEEEEEEE
T ss_pred             C---ceEEEccCCCcCCC-CCceEEEEEEE
Confidence            8   57899999988876 35666666654

>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Nuclease
domain: Nuclease Nuc
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.40  E-value=1.2e-12  Score=117.55  Aligned_cols=134  Identities=16%  Similarity=0.239  Sum_probs=96.5

Q ss_pred             chHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCC
Q 008859          242 TCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPG  321 (551)
Q Consensus       242 ~~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g  321 (551)
                      ...+.+.++|.+|+++|+|+.|.|+                 ...+.+.|++++++||+|+||+ |..+....       
T Consensus        13 ~~~~~i~~~I~~A~~~I~I~~~~~~-----------------~~~i~~aL~~a~~rGV~Vril~-~~~~~~~~-------   67 (152)
T d1byra_          13 SARVLVLSAIDSAKTSIRMMAYSFT-----------------APDIMKALVAAKKRGVDVKIVI-DERGNTGR-------   67 (152)
T ss_dssp             HHHHHHHHHHHHCSSEEEEEESSBC-----------------CHHHHHHHHHHHHTTCEEEEEE-ESTTCCSH-------
T ss_pred             cHHHHHHHHHHhCCcEEEEEEEeec-----------------CHHHHHHHHHHHhcCCeEEEEE-Eeecccch-------
Confidence            4678899999999999999998542                 2578999999999999999997 76543221       


Q ss_pred             cccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccccCCC
Q 008859          322 VMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP  401 (551)
Q Consensus       322 ~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R~Dt~  401 (551)
                       +   .......+...++.+....                ....+|.|++|||++        ++|+|+.|++..-+.  
T Consensus        68 -~---~~~~~~~~~~~~~~~~~~~----------------~~~~~H~K~~ivD~~--------~~~~GS~N~t~~~~~--  117 (152)
T d1byra_          68 -A---SIAAMNYIANSGIPLRTDS----------------NFPIQHDKVIIVDNV--------TVETGSFNFTKAAET--  117 (152)
T ss_dssp             -H---HHHHHHHHHHTTCCEEEEC----------------SSSCCCCCEEEETTT--------EEEEESCCBSHHHHH--
T ss_pred             -h---hHHHHHHhhhccccccccc----------------cccccccceEEecCc--------eeEecccCCChHHHh--
Confidence             0   1122333444555544211                123568899999998        999999999873332  


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeC--HHHHHHHHHHHHHHHhhc
Q 008859          402 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG--PAAYDVLINFEQRWRKAT  460 (551)
Q Consensus       402 ~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~G--Paa~dv~~~F~~rW~~~~  460 (551)
                                                    -.++..+.+++  ++|..+...|.+.|+.+.
T Consensus       118 ------------------------------~n~e~~~~i~~~~~v~~~~~~~F~~~w~~~~  148 (152)
T d1byra_         118 ------------------------------KNSENAVVIWNMPKLAESFLEHWQDRWNQGR  148 (152)
T ss_dssp             ------------------------------TSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred             ------------------------------cCCcceEEEEcCHHHHHHHHHHHHHHHhhCC
Confidence                                          12466777765  478999999999998654

>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

Probab=99.34  E-value=3.8e-12  Score=124.18  Aligned_cols=161  Identities=20%  Similarity=0.300  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHhccceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCCCCCCc
Q 008859          243 CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGV  322 (551)
Q Consensus       243 ~~~~l~~aI~~A~~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~~~~g~  322 (551)
                      ....+..+|++|+++|||+.+.+.+.       ..+... .+..|.++|.++++|||+|+||+ |+.++...........
T Consensus        55 ~e~a~~~lI~~A~~~I~I~~q~~~~~-------~~p~~~-~~~~l~~AL~~aa~RGV~Vrvll-~~~~~~~~~~~~~~~~  125 (246)
T d1v0wa2          55 EESALRALVASAKGHIEISQQDLNAT-------CPPLPR-YDIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGSGGYSQ  125 (246)
T ss_dssp             HHHHHHHHHHTCSSEEEEEESCSSCC-------TTTSCS-CCHHHHHHHHHHHHTTCEEEEEE-CCGGGCC------CCC
T ss_pred             HHHHHHHHHHhcCcEEEEEEEeeccc-------CCcccc-ccHHHHHHHHHHHHcCCcEEEEE-ecCCcccccccchHHH
Confidence            34578899999999999999865322       111111 23689999999999999999998 7765432111101111


Q ss_pred             ccCCc---HHHHhHhc-------------CCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEE
Q 008859          323 MATHD---EETKKFFK-------------HSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITA  386 (551)
Q Consensus       323 ~~t~~---~~~~~~~~-------------~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~va  386 (551)
                      .....   .+...++.             ..+.++..  .........    ..+...+.|.|++|||++        ++
T Consensus       126 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~lH~K~~VVD~~--------~~  191 (246)
T d1v0wa2         126 IKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLAT--FRSSPNGKW----ADGHPYAQHHKLVSVDSS--------TF  191 (246)
T ss_dssp             CSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEE--CCSSSSSSC----TTSCCCCBCCEEEEETTT--------EE
T ss_pred             HHHHHHhcchhhhccccccchhhhhccccccccceee--eecccCccc----cCCcccccceeEEEEcCC--------EE
Confidence            11100   11111110             11222221  111111111    112355789999999999        99


Q ss_pred             EEceeeccccccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCHHHH-HHHH-HHHHHHHhhcC
Q 008859          387 FIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAY-DVLI-NFEQRWRKATK  461 (551)
Q Consensus       387 fvGG~dL~~~R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GPaa~-dv~~-~F~~rW~~~~~  461 (551)
                      ||||.||.. ||                                  |+|+.+.|+||++. .+.. .|...|+.+..
T Consensus       192 ~VGS~Nl~p-~~----------------------------------~~E~g~vi~~p~~a~~l~~~~~~~~W~~s~~  233 (246)
T d1v0wa2         192 YIGSKNLYP-SW----------------------------------LQDFGYIVESPEAAKQLDAKLLDPQWKYSQE  233 (246)
T ss_dssp             EEESCCSSC-CC----------------------------------SBCEEEEEECHHHHHHHHHHTHHHHHHHHGG
T ss_pred             EEcCCcCCc-ch----------------------------------hccCcEEEeCHHHHHHHHHHHHHHHHHhccc
Confidence            999999964 33                                  35899999999554 5655 69999997544

>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Polyphosphate kinase C-terminal domain
domain: Polyphosphate kinase, PPK
species: Porphyromonas gingivalis [TaxId: 837]

Probab=93.99  E-value=0.72  Score=40.75  Aligned_cols=137  Identities=15%  Similarity=0.212  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHhcc-----ceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCC
Q 008859          243 CWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV  317 (551)
Q Consensus       243 ~~~~l~~aI~~A~-----~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~  317 (551)
                      .|+.+.+-|++|-     ..|-++-|.+         .       ....+.+.|.++|+.|-+|-++| --..-++    
T Consensus        34 sF~~vv~fl~eAA~DP~V~~Ik~TlYR~---------a-------~~S~Ii~aLi~AA~nGK~Vtv~v-ELkARFD----   92 (188)
T d2o8ra3          34 TYDYVVRLLMEAAISPDVSEIRLTQYRV---------A-------ENSSIISALEAAAQSGKKVSVFV-ELKARFD----   92 (188)
T ss_dssp             CSHHHHHHHHHHHTCTTEEEEEEEESCC---------C-------SCCHHHHHHHHHHHTTCEEEEEE-CCCSCC-----
T ss_pred             ccHHHHHHHHHHhcCCCccEEEEEEEEe---------c-------CCchHHHHHHHHHHcCCEEEEEE-echhhhh----
Confidence            4677777777764     4788887732         2       35799999999999999999998 3221111    


Q ss_pred             CCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCC-CCCCcceEEEEceeecccc
Q 008859          318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQA-SGNNRKITAFIGGIDLCDG  396 (551)
Q Consensus       318 ~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~-~~~~~~~vafvGG~dL~~~  396 (551)
                            ...+-+..+.|+.+||+|+.  ..+  +            +--|-|+++|--+. .+...+-.+++|-=|... 
T Consensus        93 ------Ee~NI~wa~~Le~aGv~Viy--G~~--g------------lKvHaK~~lI~R~e~~g~~~~~Y~hlgTGNyn~-  149 (188)
T d2o8ra3          93 ------EENNLRLSERMRRSGIRIVY--SMP--G------------LKVHAKTALILYHTPAGERPQGIALLSTGNFNE-  149 (188)
T ss_dssp             ---------CHHHHHHHHHHTCEEEE--CCT--T------------CCBCCCEEEEEECCCSSSCCCEEEEEESSCSSC-
T ss_pred             ------HHHHHHHhhhHHhcCeEEee--Ccc--c------------hhhcceeeEEEEEEcCccccccEEEeCCCCcCc-
Confidence                  11244566778899999884  111  1            23399998886542 223334477776333322 


Q ss_pred             ccCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHHH
Q 008859          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFEQ  454 (551)
Q Consensus       397 R~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~~  454 (551)
                                                     .-..-+-|+.+.-.-| ...|+...|..
T Consensus       150 -------------------------------~TAr~YtD~~l~Ta~~~i~~Dv~~~F~~  177 (188)
T d2o8ra3         150 -------------------------------TTARIYSDTTLMTANTDIVHDVYRLFRI  177 (188)
T ss_dssp             -------------------------------CCSSCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             -------------------------------cchhheeeeeeecCCHHHHHHHHHHHHH
Confidence                                           0123467888777766 67888888853

>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Polyphosphate kinase C-terminal domain
domain: Polyphosphate kinase, PPK
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.093  Score=46.59  Aligned_cols=135  Identities=17%  Similarity=0.211  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHhcc-----ceEEEEEEEEeeeeeeeecCCCCCCCCCchhHHHHHHHhhhcCCeEEEEEeCCCCccCccCC
Q 008859          243 CWEDICHAISEAH-----HLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGV  317 (551)
Q Consensus       243 ~~~~l~~aI~~A~-----~~I~I~~w~~~~~~~L~r~~~~~~p~g~~~~l~elL~~ka~~GV~V~iLvwD~~~s~~~~~~  317 (551)
                      .|+.+.+-|++|-     ..|-|+-|.+         .       ....+.++|.++|+.|-+|-++| --..-++    
T Consensus        35 sF~~vv~fl~eAA~DP~V~~Ik~TlYR~---------a-------~~S~Ii~aLi~Aa~nGK~Vtv~v-ELkARFD----   93 (187)
T d1xdpa3          35 TFEHVLELLRQASFDPSVLAIKINIYRV---------A-------KDSRIIDSMIHAAHNGKKVTVVV-ELQARFD----   93 (187)
T ss_dssp             CTHHHHHHHHHHHHCTTEEEEEEEESSC---------C-------TTCHHHHHHHHHHHTTCEEEEEE-CTTCSST----
T ss_pred             hhhHHHHHHHHHhcCCCccEEEEEEEEe---------c-------CCccHHHHHHHHHHcCCEEEEEE-echhccc----
Confidence            4777778777763     5888888732         2       35799999999999999999998 3222111    


Q ss_pred             CCCCcccCCcHHHHhHhcCCCcEEEecCCCCcccccccccccccccccCccceEEEccCCCCCCcceEEEEceeeccccc
Q 008859          318 KTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR  397 (551)
Q Consensus       318 ~~~g~~~t~~~~~~~~~~~~~v~~~l~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~dL~~~R  397 (551)
                            ...+-+..+.|+.+||+|.+  ..++  +            --|-|+++|--+..+. -+-.+++|-=|...  
T Consensus        94 ------Ee~NI~wa~~Le~aGv~Viy--G~~g--l------------KvHaK~~lV~R~e~~~-~~~Y~higTGNyn~--  148 (187)
T d1xdpa3          94 ------EEANIHWAKRLTEAGVHVIF--SAPG--L------------KIHAKLFLISRKENGE-VVRYAHIGTGNFNE--  148 (187)
T ss_dssp             ------TTTTTTTTHHHHHHTCEEEE--CCTT--C------------EECCEEEEEEEEETTE-EEEEEEEESSCSCT--
T ss_pred             ------HHHHHHHHHHHHHCCCEEEc--Cccc--c------------eeeeEEEEEEEEcCCc-EEEEEEecCCCcCc--
Confidence                  11223445668899999885  1121  2            2299999997653222 22356665433322  


Q ss_pred             cCCCcccccccccccccCCCCCCCCCCCCCCCCCCeeEeeEEEeCH-HHHHHHHHHH
Q 008859          398 YDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP-AAYDVLINFE  453 (551)
Q Consensus       398 ~Dt~~H~l~~~l~~~~~~d~~~~~~~~~~~~~r~pWhD~h~~i~GP-aa~dv~~~F~  453 (551)
                                                    .-..-+-|+.+.-.-| ...|+...|.
T Consensus       149 ------------------------------~TAriYtD~~l~T~~~~i~~D~~~~F~  175 (187)
T d1xdpa3         149 ------------------------------KTARLYTDYSLLTADARITNEVRRVFN  175 (187)
T ss_dssp             ------------------------------TGGGTEEEEEEEECCHHHHHHHHHHHH
T ss_pred             ------------------------------cchhheeeeeeecCCHHHHHHHHHHHH
Confidence                                          0013456888777776 6788888884