Citrus Sinensis ID: 008862
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 550 | ||||||
| 255585488 | 533 | glycosyltransferase, putative [Ricinus c | 0.947 | 0.977 | 0.663 | 0.0 | |
| 317106706 | 530 | JHL06B08.8 [Jatropha curcas] | 0.936 | 0.971 | 0.674 | 0.0 | |
| 224139884 | 444 | predicted protein [Populus trichocarpa] | 0.776 | 0.961 | 0.770 | 0.0 | |
| 356504769 | 537 | PREDICTED: uncharacterized glycosyltrans | 0.905 | 0.927 | 0.665 | 0.0 | |
| 356572020 | 530 | PREDICTED: uncharacterized glycosyltrans | 0.909 | 0.943 | 0.658 | 0.0 | |
| 357509679 | 541 | Glycosyltransferase [Medicago truncatula | 0.88 | 0.894 | 0.657 | 0.0 | |
| 56409840 | 541 | glycosyltransferase [Medicago truncatula | 0.88 | 0.894 | 0.655 | 0.0 | |
| 224086964 | 413 | predicted protein [Populus trichocarpa] | 0.743 | 0.990 | 0.782 | 0.0 | |
| 225441880 | 529 | PREDICTED: uncharacterized protein LOC10 | 0.929 | 0.965 | 0.635 | 0.0 | |
| 297817062 | 512 | hypothetical protein ARALYDRAFT_486181 [ | 0.825 | 0.886 | 0.629 | 1e-179 |
| >gi|255585488|ref|XP_002533436.1| glycosyltransferase, putative [Ricinus communis] gi|223526710|gb|EEF28943.1| glycosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/556 (66%), Positives = 440/556 (79%), Gaps = 35/556 (6%)
Query: 5 YYQRYLKLKKAMQQIPFREHFVNDGDGDDDDDEESRAGAAALVFVCAPPSYHNKRSSSTT 64
+Y RY +LKK + H G+ D + AL VC Y+ ++
Sbjct: 3 HYHRYSQLKKD----EYHHHQQQHGEEDIE----------ALALVCGNSGYYKRK----- 43
Query: 65 SRTKLLSLLLLSLLSCTFILTPHAL---SLFSFADSFGAEDEGLVA-ADVNAPLCSSISN 120
R KLLSLL LSLL C IL PH S FS SF E +G++ DVNA LCSSISN
Sbjct: 44 -RPKLLSLLFLSLLCCCLILAPHFFCSSSAFSLLYSFVVETDGVIGDVDVNASLCSSISN 102
Query: 121 GTICCDRSGIRTDVCIMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEE-KELQHEKIRP 179
GT+CCDR R+D+CIMKGD+RT+SASSS+ LY + N SS++++ +E+QHEKI+P
Sbjct: 103 GTMCCDRRSFRSDICIMKGDIRTHSASSSVLLYTSRN-----TSSLIKDNEEIQHEKIKP 157
Query: 180 YTRKWETSVMDTIDELDLVVKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFNDGIL 239
YTRKWETSVM TID+LDL++K+E + NH CDV HDVPAVFFSTGGYTGNVYHEFNDGI+
Sbjct: 158 YTRKWETSVMGTIDQLDLILKQEKSSVNHRCDVKHDVPAVFFSTGGYTGNVYHEFNDGIV 217
Query: 240 PLYITSQHLKKKVVFVILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCFPEAIVGLR 299
PLYITSQHLK+KVVFVILEYH WW+MKYGDILSRLSDYP ID+SGDKRTHCFPEAIVGLR
Sbjct: 218 PLYITSQHLKRKVVFVILEYHTWWMMKYGDILSRLSDYPAIDYSGDKRTHCFPEAIVGLR 277
Query: 300 IHDELTVDPSLMRGNKNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLS-----LSPSSD 354
IHDELTVD SLM+GNK+ +DF N+LD+AY PRI+GLI++EE EA +KL LSPSS+
Sbjct: 278 IHDELTVDSSLMKGNKSIVDFHNLLDKAYRPRIKGLIREEEHEALKKLKQKVLPLSPSSE 337
Query: 355 PSFKNVKEVQGDQSKKPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAK 414
+ K+VQ + K+PKLVILSRN SRAITNE+ LVKMAE IGF+V+V+RP+RT+ELAK
Sbjct: 338 TLLEFRKDVQESKHKRPKLVILSRNASRAITNEDLLVKMAEGIGFRVEVLRPERTTELAK 397
Query: 415 IYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIG 474
IYRALNSS+VM+GVHGAAMTHFLFMKPGSVFIQVIPLGT+WAAETYYGEPARKLGLKYIG
Sbjct: 398 IYRALNSSEVMIGVHGAAMTHFLFMKPGSVFIQVIPLGTEWAAETYYGEPARKLGLKYIG 457
Query: 475 YTILPRESSLYDQYDKNDPVLRDPSSVNEKGWQYTKTIYLDGQNVRLNLRRFQKRLVRAY 534
Y ILPRESSLYD+YDKNDPVL+DP+S++ KGWQYTKTIYLD QNVRL+L RFQK+LV AY
Sbjct: 458 YQILPRESSLYDKYDKNDPVLQDPASISNKGWQYTKTIYLDSQNVRLDLERFQKQLVLAY 517
Query: 535 DYSINRISQNCHHQSQ 550
++S+ +++ + H S
Sbjct: 518 EHSMKKMNHSSRHHSH 533
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|317106706|dbj|BAJ53206.1| JHL06B08.8 [Jatropha curcas] | Back alignment and taxonomy information |
|---|
| >gi|224139884|ref|XP_002323324.1| predicted protein [Populus trichocarpa] gi|222867954|gb|EEF05085.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356504769|ref|XP_003521167.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356572020|ref|XP_003554168.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357509679|ref|XP_003625128.1| Glycosyltransferase [Medicago truncatula] gi|355500143|gb|AES81346.1| Glycosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|56409840|emb|CAI30145.1| glycosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|224086964|ref|XP_002308019.1| predicted protein [Populus trichocarpa] gi|222853995|gb|EEE91542.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225441880|ref|XP_002284307.1| PREDICTED: uncharacterized protein LOC100245312 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|297817062|ref|XP_002876414.1| hypothetical protein ARALYDRAFT_486181 [Arabidopsis lyrata subsp. lyrata] gi|297322252|gb|EFH52673.1| hypothetical protein ARALYDRAFT_486181 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 550 | ||||||
| TAIR|locus:2062709 | 500 | AT2G41640 [Arabidopsis thalian | 0.458 | 0.504 | 0.634 | 2e-160 | |
| TAIR|locus:2082598 | 504 | AT3G57380 [Arabidopsis thalian | 0.46 | 0.501 | 0.631 | 3.4e-156 | |
| TAIR|locus:2076274 | 494 | AT3G10320 [Arabidopsis thalian | 0.658 | 0.732 | 0.638 | 2.6e-127 | |
| TAIR|locus:2063793 | 452 | AT2G03370 [Arabidopsis thalian | 0.305 | 0.371 | 0.438 | 9.7e-72 | |
| TAIR|locus:2063809 | 455 | AT2G03360 [Arabidopsis thalian | 0.3 | 0.362 | 0.416 | 1.1e-70 | |
| TAIR|locus:2092757 | 384 | AT3G18170 [Arabidopsis thalian | 0.3 | 0.429 | 0.380 | 1.5e-57 | |
| TAIR|locus:2092762 | 470 | AT3G18180 [Arabidopsis thalian | 0.309 | 0.361 | 0.375 | 4.4e-28 | |
| UNIPROTKB|F1SFQ3 | 527 | EOGT "Uncharacterized protein" | 0.245 | 0.256 | 0.288 | 2.6e-11 | |
| UNIPROTKB|Q5NDL9 | 527 | EOGT "EGF domain-specific O-li | 0.267 | 0.278 | 0.25 | 7.1e-10 | |
| WB|WBGene00010386 | 523 | H12D21.10 [Caenorhabditis eleg | 0.301 | 0.317 | 0.247 | 2.4e-08 |
| TAIR|locus:2062709 AT2G41640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.0e-160, Sum P(2) = 2.0e-160
Identities = 170/268 (63%), Positives = 207/268 (77%)
Query: 80 CTFILTPHAL---SLFSFADSFGAEDEGLVAAD-VNAPLCSSISNGTICCDRSGIRTDVC 135
C F+L+P+ L S S DSF E EGL + + V PLCS ISNGTICCDR+G+R+D+C
Sbjct: 52 CCFVLSPYYLFGFSTLSLLDSFRREIEGLSSYEPVITPLCSEISNGTICCDRTGLRSDIC 111
Query: 136 IMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEEKELQHEKIRPYTRKWETSVMDTIDEL 195
+MKGDVRTNSASSSIFL+ ++ + EKI+PYTRKWETSVMDT+ EL
Sbjct: 112 VMKGDVRTNSASSSIFLFTSSTN-----------NNTKPEKIKPYTRKWETSVMDTVQEL 160
Query: 196 DLVVKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQHLKKKVVFV 255
+L+ K N++++ CDV HDVPAVFFSTGGYTGNVYHEFNDGI+PL+ITSQH KKVVFV
Sbjct: 161 NLITKDSNKSSDRVCDVYHDVPAVFFSTGGYTGNVYHEFNDGIIPLFITSQHYNKKVVFV 220
Query: 256 ILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCFPEAIVGLRIHDELTVDPSLMRGNK 315
I+EYH+WW MKYGD++S+LSDYP +DF+GD RTHCF EA VGLRIHDELTV+ SL+ GN+
Sbjct: 221 IVEYHDWWEMKYGDVVSQLSDYPLVDFNGDTRTHCFKEATVGLRIHDELTVNSSLVIGNQ 280
Query: 316 NAIDFRNVLDQAYWPRIRGLIQDEEREA 343
+DFRNVLD+ Y RI+ L Q EE EA
Sbjct: 281 TIVDFRNVLDRGYSHRIQSLTQ-EETEA 307
|
|
| TAIR|locus:2082598 AT3G57380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076274 AT3G10320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2063793 AT2G03370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2063809 AT2G03360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092757 AT3G18170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092762 AT3G18180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SFQ3 EOGT "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5NDL9 EOGT "EGF domain-specific O-linked N-acetylglucosamine transferase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00010386 H12D21.10 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00160503 | hypothetical protein (444 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 550 | |||
| pfam04577 | 206 | pfam04577, DUF563, Protein of unknown function (DU | 4e-16 | |
| COG4421 | 368 | COG4421, COG4421, Capsular polysaccharide biosynth | 5e-04 |
| >gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563) | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-16
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 368 SKKPKLVILSR--NGSRAITNENSLVKMAEDIGFQVQVVRPDRTS--ELAKIYRALNSSD 423
KP+ V +SR G R I NE+ L + GF++ V P+ S E K++ S+
Sbjct: 99 KIKPRKVYISRKKAGRRRILNEDELEEALPKYGFEI--VDPETLSLEEQVKLFS---SAK 153
Query: 424 VMVGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLGLKYIGYT 476
V+VG HG+A+T+ +FM PG+ ++++P + + A LGL Y
Sbjct: 154 VIVGPHGSALTNLIFMPPGTGVVELVPPNR---LDPSFRNLAALLGLDYYYVY 203
|
Family of uncharacterized proteins. Length = 206 |
| >gnl|CDD|226845 COG4421, COG4421, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 550 | |||
| KOG4698 | 475 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF04577 | 206 | DUF563: Protein of unknown function (DUF563); Inte | 99.95 | |
| COG4421 | 368 | Capsular polysaccharide biosynthesis protein [Carb | 99.7 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 80.29 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 80.14 |
| >KOG4698 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-83 Score=674.83 Aligned_cols=446 Identities=46% Similarity=0.729 Sum_probs=392.6
Q ss_pred cCCCCccccchhHHHHHHHHHHHHHhhcCCcchhhc---cccccCcccccccc-cccCCCCcccCCCCceeecCCCCCcc
Q 008862 58 KRSSSTTSRTKLLSLLLLSLLSCTFILTPHALSLFS---FADSFGAEDEGLVA-ADVNAPLCSSISNGTICCDRSGIRTD 133 (550)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Cd~s~~r~d 133 (550)
|+...+.-.||.-+-=+++++.+|++..|..+.+-. .++....+.+.... ...+.++|+..+++.++||+++.++|
T Consensus 17 ~~~~~~~~~~~~f~~~~~~vl~~~~v~kp~~l~~~~~~~~~~tg~~~~~~~~~~~~~~q~~~~~~e~~~~~C~~~g~~s~ 96 (475)
T KOG4698|consen 17 KKNLLGLLIYGVFHSSLLSVLPKCVVVKPYLLLLPRFQPDLPTGSFEDELLPLSQLLRQPPGSALEDSSFFCDRSGTRSD 96 (475)
T ss_pred hhcCccceecCcchhhhhhhcccceecCCeecccCccccCcccceeeccCCChhhcccCCCCcccCCceEEeeccccccc
Confidence 333334444444444467899999999888766322 22323345554444 44557999999999999999999999
Q ss_pred eeEEeCcEEeeCCCceEEEEecCCCcccccccchhhcccceeeecCCCCCCcccccCccceeEEEeccCCCcCCCCCcee
Q 008862 134 VCIMKGDVRTNSASSSIFLYKNTNGFINYVSSMVEEKELQHEKIRPYTRKWETSVMDTIDELDLVVKKENETANHHCDVV 213 (550)
Q Consensus 134 ~C~~~GdvR~~~~~~tv~l~~~~~~~~~~~~~~~~~~~~~~~~irPY~RK~~~~~m~~v~Evtv~~~~~~~~~~p~C~v~ 213 (550)
+|+|+||+|+|+.++|+++....-- ++-.+.+|+||||+||||..+|..|+|+++...+.+ ...+|+++
T Consensus 97 ~c~~kg~~r~h~~~~~~~~~~~~~~---------~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~--~~r~c~v~ 165 (475)
T KOG4698|consen 97 FCEMKGDVRTHPDSSTVLLTLGRLL---------TFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGS--EIRRCDVN 165 (475)
T ss_pred hhhhcCccccCcchhhhhhhccchh---------hhccccchhcccccccccccccccccccceEEcCCc--ccceeeee
Confidence 9999999999999999987765311 011357999999999999999999999999988743 45789999
Q ss_pred eecceEEEEcCCccccccchhhhhhhhHHhhHh--hcCCeeEEEEecccchhhccHHHHHHhcCCCCCcccCCCCcceee
Q 008862 214 HDVPAVFFSTGGYTGNVYHEFNDGILPLYITSQ--HLKKKVVFVILEYHNWWIMKYGDILSRLSDYPPIDFSGDKRTHCF 291 (550)
Q Consensus 214 h~~Pavvfs~ggytgN~fH~f~D~liPLfiT~~--~f~~~Vq~vi~d~~~ww~~kY~~ll~~LS~y~vIdl~~d~~v~CF 291 (550)
|++||+||++|||+||.||+|+|+++|||+|.+ .|+++||+|+++.++||+.||.+++++||+||+++++++..+|||
T Consensus 166 ~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~~ThcF 245 (475)
T KOG4698|consen 166 HEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAELRTHCF 245 (475)
T ss_pred cccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCceEEEe
Confidence 999999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred CeeEEccccccccccCCCCCCCC--ccHHHHHHHHHHhhccccccccchHHHHHHHhccCCCCCCCCCCccccccCCCCC
Q 008862 292 PEAIVGLRIHDELTVDPSLMRGN--KNAIDFRNVLDQAYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSK 369 (550)
Q Consensus 292 ~~aiVGL~~h~~L~idp~~~p~~--~si~dFr~FLr~ay~~r~~~L~~~~~r~~~~~l~i~p~g~~~~~~~~~~~~~~~~ 369 (550)
.+++|||..|.++++||...+++ ++|.+|++||..+|++|+... +++ ..+..+
T Consensus 246 ~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~------------~~t-------------~~~~~k 300 (475)
T KOG4698|consen 246 KEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEA------------NVT-------------APEPWK 300 (475)
T ss_pred eeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhccccccc------------ccC-------------CcChhh
Confidence 99999999999999999998866 899999999999999775311 100 122456
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhccCCCcEEEEEe
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLFMKPGSVFIQVI 449 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lFmppga~VIEI~ 449 (550)
+||+++++|.++|.|+|++||.+++++.||+|.+++++. .++++|+++.+++|||||||||||||++|+||++++|||.
T Consensus 301 kpri~~lsR~~~r~Ilne~el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~ 379 (475)
T KOG4698|consen 301 KPRITILSRAGSRAILNEDELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIY 379 (475)
T ss_pred CCceEEEecccchhhhcchhhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccceeEEecCCcceEEEEE
Confidence 899999999999999999999999999999999999854 9999999999999999999999999999999999999999
Q ss_pred cCC-CCcccccchHHHHhhcCCceEEEEecCCCCcccccCCCCCCccCCCCcccccCcceee-eeecCCccEEEehHHHH
Q 008862 450 PLG-TDWAAETYYGEPARKLGLKYIGYTILPRESSLYDQYDKNDPVLRDPSSVNEKGWQYTK-TIYLDGQNVRLNLRRFQ 527 (550)
Q Consensus 450 P~g-~~~~~~~~Y~~~A~~~Gl~Y~~y~i~~eEssL~~~y~~dh~v~~dP~~i~~kgW~~~~-~~yL~~QnV~lDi~rF~ 527 (550)
|+| ..|.+..+|..+|+.|+++|.+|+|.++|++|.++|++||+++.||.+..++||+.++ .+||..|+|++|+.||+
T Consensus 380 pcg~~~w~a~~a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~ 459 (475)
T KOG4698|consen 380 PCGDPGWAAKLARLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFR 459 (475)
T ss_pred ECCCccchhhhhhccccceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcc
Confidence 999 8999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 008862 528 KRLVRAYDYSINR 540 (550)
Q Consensus 528 ~~L~~A~~~l~~~ 540 (550)
+.+.+|+...+.+
T Consensus 460 ~~~~~a~~~~~~~ 472 (475)
T KOG4698|consen 460 KTLVKAYLKEITQ 472 (475)
T ss_pred cchhHHHHHHHHh
Confidence 9999999887765
|
|
| >PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61 | Back alignment and domain information |
|---|
| >COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 550 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 8e-07
Identities = 76/483 (15%), Positives = 151/483 (31%), Gaps = 130/483 (26%)
Query: 184 WETSVMDTIDELDLV-VKKENETANHHCDVVHDVPAVFFSTGGYTGNVYHEFND--GILP 240
+ET + D++ V ++ N C V D+P S ++ + G L
Sbjct: 9 FETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLR 66
Query: 241 LYITSQHLKKKVV--FV--ILEYHNWWIM---------------KYGDILSRLSDYPPID 281
L+ T ++++V FV +L + ++M Y + RL + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV- 125
Query: 282 FSGDKRTHCFPEAIVGLRIH-DELTVDPSL----MRGN-K-----NAIDFRNVL----DQ 326
F+ K + + LR EL ++ + G+ K + V +
Sbjct: 126 FA--KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 327 AYWPRIRGLIQDEEREAREKLSLSPSSDPSFKNVKEVQGDQSKKPKLVILSRNG--SRAI 384
+W + E L DP++ + + D S KL I S R +
Sbjct: 184 IFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTS----RSDHSSNIKLRIHSIQAELRRLL 238
Query: 385 TNE---NSL-----VKMAEDI---GFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAM 433
++ N L V+ A+ +++ R ++ A ++ + + H +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 434 THF----LFMK---------PGSVFIQVIPLGTDWAAETYYGEPAR-------------- 466
T L +K P V + P AE+ A
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 467 --KLGLK----------YIGYTILPRE--------SSLYDQYDKNDPV-----LRDPSSV 501
+ L + ++ P S ++ K+D + L S V
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 502 NEKGWQYTKTI---YLDGQNVRLNLRRFQKRLVRAYD----YSINRISQNC--------- 545
++ + T +I YL+ + N + +V Y+ + + +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 546 -HH 547
HH
Sbjct: 478 GHH 480
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 550 | |||
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 80.98 |
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=80.98 E-value=3.8 Score=33.97 Aligned_cols=91 Identities=14% Similarity=0.203 Sum_probs=65.2
Q ss_pred CCEEEEEEcCCCccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHhcCCeEEeechhhhhhhhc--cCCCcEEEE
Q 008862 370 KPKLVILSRNGSRAITNENSLVKMAEDIGFQVQVVRPDRTSELAKIYRALNSSDVMVGVHGAAMTHFLF--MKPGSVFIQ 447 (550)
Q Consensus 370 rprlviIsR~~sR~IlNe~evv~~l~~~Gf~V~v~e~~~~~s~~eQi~l~~~aDVlVGvHGAGLTN~lF--mppga~VIE 447 (550)
||||++. + .+ .++.++.+++. |+|+....+..++-+|.++.+.++|++|...+..++.-+| +|++=.+|-
T Consensus 1 K~kVlit-~----~~--~~~~~~~l~~~-~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~ 72 (129)
T d1gdha2 1 KKKILIT-W----PL--PEAAMARARES-YDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCIS 72 (129)
T ss_dssp CCEEEES-S----CC--CHHHHHHHHTT-SEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEE
T ss_pred CCEEEEe-C----CC--CHHHHHHHHcC-CcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeee
Confidence 5787643 2 22 44677788765 5877655445689999999999999998888888999988 666777777
Q ss_pred EecCCCCcccccchHHHHhhcCCce
Q 008862 448 VIPLGTDWAAETYYGEPARKLGLKY 472 (550)
Q Consensus 448 I~P~g~~~~~~~~Y~~~A~~~Gl~Y 472 (550)
-+--|+++.. -..|+..|+.-
T Consensus 73 ~~gvG~d~ID----~~~a~~~gI~V 93 (129)
T d1gdha2 73 TYSIGFDHID----LDACKARGIKV 93 (129)
T ss_dssp EESSCCTTBC----HHHHHHTTCEE
T ss_pred ecccCCcccc----HHHHHhCCCEE
Confidence 7777765443 24566677764
|