Citrus Sinensis ID: 008863
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 550 | 2.2.26 [Sep-21-2011] | |||||||
| O81078 | 940 | Glutamate receptor 2.9 OS | yes | no | 0.829 | 0.485 | 0.298 | 3e-56 | |
| Q8LGN0 | 952 | Glutamate receptor 2.7 OS | no | no | 0.838 | 0.484 | 0.292 | 5e-55 | |
| O04660 | 901 | Glutamate receptor 2.1 OS | no | no | 0.849 | 0.518 | 0.304 | 1e-53 | |
| Q9C5V5 | 947 | Glutamate receptor 2.8 OS | no | no | 0.849 | 0.493 | 0.304 | 2e-53 | |
| Q9SHV1 | 920 | Glutamate receptor 2.2 OS | no | no | 0.849 | 0.507 | 0.295 | 6e-53 | |
| Q9SHV2 | 895 | Glutamate receptor 2.3 OS | no | no | 0.814 | 0.500 | 0.295 | 6e-52 | |
| O81776 | 896 | Glutamate receptor 2.4 OS | no | no | 0.878 | 0.539 | 0.299 | 1e-51 | |
| Q9LFN8 | 967 | Glutamate receptor 2.6 OS | no | no | 0.852 | 0.485 | 0.287 | 2e-51 | |
| Q9LFN5 | 918 | Glutamate receptor 2.5 OS | no | no | 0.845 | 0.506 | 0.281 | 9e-50 | |
| Q84W41 | 903 | Glutamate receptor 3.6 OS | no | no | 0.869 | 0.529 | 0.260 | 4e-45 |
| >sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 156/522 (29%), Positives = 271/522 (51%), Gaps = 66/522 (12%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNH--KLSLQIRDHNRDPFQAATAAQELI 93
K+G ++D N+ K +T++K+AV +F +D N+ +L+L +RD D QA+ AA +LI
Sbjct: 31 KVGVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDSMEDTVQASAAALDLI 90
Query: 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSE 153
E+V I G + + ++A++ QVP ++F+A +PL S + PY +R +DS
Sbjct: 91 KTEQVSAIIGPINSMQADFMIKLANKTQVPTITFSA--TSPLLTSIKSPYFVRATIDDSS 148
Query: 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSI 213
Q++ IA + + + WRRV AIY DN +G G + L +ALQ+V E++ R V+PP +I
Sbjct: 149 QVRAIASIFKFFRWRRVVAIYVDNEFG--EGFMPFLFDALQDV---EVK-RSVIPP-EAI 201
Query: 214 SDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANA 273
D ++ EL+K+ ++Q+RVF+V S + + +F A +G++ + VW++TN + +
Sbjct: 202 DD---EIQKELRKLMERQARVFVVHMES-SLALRVFQIARDIGMMEEGYVWLMTNGMTHM 257
Query: 274 LDSLNT-TVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPE-EDHFHPSIHALR 331
+ +N ++++EG LG++S+ S +F ++R F E P D + + AL
Sbjct: 258 MRHINNGRSLNTIEGVLGVRSHVP-KSKELGDFRLRWKRTFEKENPSMRDDLN--VFALW 314
Query: 332 AHDSIKIITEAI-----------------------GRLNYNISSPEMLLRQMLSSDFSGL 368
A+DSI + +A+ G + ++ P L + F+GL
Sbjct: 315 AYDSITALAKAVEKANTKSLWYDNGSTLSKNRTDLGNVGVSLYGPS-LQKAFSEVRFNGL 373
Query: 369 SGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGF 428
+G+ + DG+ L + I+N VG + + + FW P G +S + +
Sbjct: 374 AGEFKLIDGQ-LQSPKFEIINFVGNEERIIGFWTPRDGLMDATSSN-----------KKT 421
Query: 429 TGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYD 488
GPVIWPG PKGW +P + +R+GVP + F FV + +P+
Sbjct: 422 LGPVIWPGK-SKIVPKGWEIPGKK--LRVGVPMKKGFFDFVKVTINPITNKKTPT----- 473
Query: 489 GFSIELFRLVVDHLNYDLPYEFVPHDGV--YDDLINGVYDKV 528
G++IE+F + L Y + E+V + Y++L+ VYDK
Sbjct: 474 GYAIEIFEAALKELPYLVIPEYVSFESPNNYNNLVYQVYDKT 515
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Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 155/530 (29%), Positives = 265/530 (50%), Gaps = 69/530 (13%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNH--KLSLQIRDHNRDPFQAATAAQELI 93
K+G ++D ++ K +T++ I++ +F ++ +L++ IRD D QA++AA +LI
Sbjct: 40 KVGVVLDLHTSFSKLCLTSINISLSDFYKYHSDYTTRLAIHIRDSMEDVVQASSAALDLI 99
Query: 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSE 153
E+V I G T + + +A + QVP ++F+A PL S PY +R +DS
Sbjct: 100 KNEQVSAIIGPRTSMQAEFMIRLADKSQVPTITFSA--TCPLLTSINSPYFVRATLDDSS 157
Query: 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSI 213
Q+K IA + + + WR V AIY DN +G G L LL +ALQ+V + + L+
Sbjct: 158 QVKAIAAIVKSFGWRNVVAIYVDNEFG--EGILPLLTDALQDVQAFVVNRCLI------- 208
Query: 214 SDPKEA----VRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269
P+EA + EL K+ Q+RVF+V + F +A +G++ + VW++T+
Sbjct: 209 --PQEANDDQILKELYKLMTMQTRVFVV-HMPPTLGFRFFQKAREIGMMEEGYVWLLTDG 265
Query: 270 VANALDS-LNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIH 328
V N L S + + +M+G LG++S+ S K F + + F + +E+ +I
Sbjct: 266 VMNLLKSNERGSSLENMQGVLGVRSHIP-KSKKLKNFRLRWEKMFPKKGNDEEM---NIF 321
Query: 329 ALRAHDSIKIITEAI-----------------------GRLNYNISSPEMLLRQMLSSDF 365
ALRA+DSI + A+ G L + P LL+ + + F
Sbjct: 322 ALRAYDSITALAMAVEKTNIKSLRYDHPIASGNNKTNLGTLGVSRYGPS-LLKALSNVRF 380
Query: 366 SGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAA 425
+GL+G+ +G+ L + ++N++G + + + W P+ G SK+ + +
Sbjct: 381 NGLAGEFELINGQ-LESSVFDVINIIGSEERIIGLWRPSNGIVNAKSKNTTSVLGERL-- 437
Query: 426 EGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNL 485
GPVIWPG + PKGW +P+N + +R+G+P + F +FV K DP++ +
Sbjct: 438 ----GPVIWPGKSKDV-PKGWQIPTNGKMLRVGIPVKKGFLEFVDAKIDPIS-----NAM 487
Query: 486 RYDGFSIELFRLVVDHLNYD-LP--YEFVPHDGVYDDLI----NGVYDKV 528
G+ IE+F V+ L Y +P F+ D YD+++ G YD V
Sbjct: 488 TPTGYCIEIFEAVLKKLPYSVIPKYIAFLSPDENYDEMVYQVYTGAYDAV 537
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Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 159/523 (30%), Positives = 259/523 (49%), Gaps = 56/523 (10%)
Query: 27 TNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSD--SRNHKLSLQIRDHNRDPFQ 84
TNVN+ V IG A S M + + +++ +F S +L + D D
Sbjct: 30 TNVNVGIVNDIGT---AYSNM---TLLCINMSLSDFYSSHPETQTRLVTTVVDSKNDVVT 83
Query: 85 AATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYL 144
AA AA +LI ++VK I G T + + E+ + QVPI++++A +P S R Y
Sbjct: 84 AAAAALDLITNKEVKAILGPWTSMQAQFMIEMGQKSQVPIVTYSA--TSPSLASIRSQYF 141
Query: 145 IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSR 204
R +DS Q+ I ++ + + WR VA +Y D+ +G G + L + LQ ++ I R
Sbjct: 142 FRATYDDSSQVHAIKEIIKLFGWREVAPVYVDDTFG--EGIMPRLTDVLQEINV-RIPYR 198
Query: 205 LVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264
V+ P ++ + + EL ++ +RVF+V L + F +A +GL+ + VW
Sbjct: 199 TVISPNAT----DDEISVELLRMMTLPTRVFVVHLVEL-LASRFFAKATEIGLMKQGYVW 253
Query: 265 IVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFH 324
I+TNT+ + L +N T I +M+G LG+K+Y KE FR +T +P D
Sbjct: 254 ILTNTITDVLSIMNETEIETMQGVLGVKTYVPRS----KELEN-FRSRWTKRFPISDL-- 306
Query: 325 PSIHALRAHDSIKIITEAI---GRLNY---------NISSPEML--------LRQMLSS- 363
+++ L A+D+ + AI G N N+S + L L Q LS
Sbjct: 307 -NVYGLWAYDATTALALAIEEAGTSNLTFVKMDAKRNVSELQGLGVSQYGPKLLQTLSRV 365
Query: 364 DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNI 423
F GL+G +F +GEL IVNV G+ + + FW+ +G K + + +
Sbjct: 366 RFQGLAGDFQFINGEL-QPSVFEIVNVNGQGGRTIGFWMKEYGLFKNVDQKPASKTTFS- 423
Query: 424 AAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDK 483
+ + P+IWPG+ + PKGW +P+N + ++IGVP F++FV DP+ ++
Sbjct: 424 SWQDRLRPIIWPGDTTSV-PKGWEIPTNGKRLQIGVPVNNTFQQFVKATRDPITNST--- 479
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVP-HDGVYDDLINGVY 525
+ GFSI+ F V+ + YD+ Y+F+P DG YD L+ VY
Sbjct: 480 --IFSGFSIDYFEAVIQAIPYDISYDFIPFQDGGYDALVYQVY 520
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Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 162/532 (30%), Positives = 272/532 (51%), Gaps = 65/532 (12%)
Query: 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHK--LSLQIRDHNRDPFQAATA 88
I E+ K+G ++D N+ K +T++ +A+ +F D N++ L+L +RD +D QA+ A
Sbjct: 30 ISEI-KVGVVLDLNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDSMKDTVQASAA 88
Query: 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMA 148
A +LI E+V I G + + ++A++ QVP +SF+ A +PL S + Y +R
Sbjct: 89 ALDLIQNEQVSAIIGPIDSMQAKFMIKLANKTQVPTISFS--ATSPLLTSIKSDYFVRGT 146
Query: 149 SNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLP 208
+DS Q+K IA + + WR V AIY DN G G + L +ALQ+V R V+P
Sbjct: 147 IDDSYQVKAIAAIFESFGWRSVVAIYVDNELG--EGIMPYLFDALQDVQV----DRSVIP 200
Query: 209 PISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268
S +D + + EL K+ +Q+RVF+V AS + +F +A +G++ + VW++TN
Sbjct: 201 --SEAND--DQILKELYKLMTRQTRVFVVHMAS-RLASRIFEKATEIGMMEEGYVWLMTN 255
Query: 269 TVANALDSL-NTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYP--EEDHFHP 325
+ + + + + +++++G LG++S+ S ++F ++RNF E P +D
Sbjct: 256 GMTHMMRHIHHGRSLNTIDGVLGVRSHVP-KSKGLEDFRLRWKRNFKKENPWLRDDL--- 311
Query: 326 SIHALRAHDSIKIITEAIGRLN-----YNISSPE-----------------MLLRQMLSS 363
SI L A+DS + A+ + N YN +S LL +
Sbjct: 312 SIFGLWAYDSTTALAMAVEKTNISSFPYNNASGSSNNMTDLGTLHVSRYGPSLLEALSEI 371
Query: 364 DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNI 423
F+GL+G+ D + L + I+N VG + + + FW P+ G +S +++
Sbjct: 372 RFNGLAGRFNLIDRQ-LESPKFEIINFVGNEERIVGFWTPSNGLVNVNSNK-----TTSF 425
Query: 424 AAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDK 483
E F GP+IWPG PKGW +P+N + +++GVP + F FV + DP+ + K
Sbjct: 426 TGERF-GPLIWPGK-STIVPKGWEIPTNGKKIKVGVPVKKGFFNFVEVITDPITNITTPK 483
Query: 484 NLRYDGFSIELFRLVVDHLNYD-LP--YEFVPHDGVYDDLI----NGVYDKV 528
G++I++F + L Y +P Y F D YDDL+ NG D V
Sbjct: 484 -----GYAIDIFEAALKKLPYSVIPQYYRFESPDDDYDDLVYKVDNGTLDAV 530
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 161/545 (29%), Positives = 262/545 (48%), Gaps = 78/545 (14%)
Query: 19 SPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNH--KLSLQIR 76
S G ++ T VNI G + D + A+ + +++ +F S +L + +
Sbjct: 22 SRGQDNGKTQVNI------GVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQTRLVVNVG 75
Query: 77 DHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS 136
D D AATAA +LI ++VK I G T + + EI + +VP++S++A +P
Sbjct: 76 DSKNDVVGAATAAIDLIKNKQVKAILGPWTSMQAHFLIEIGQKSRVPVVSYSA--TSPSL 133
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNV 196
S R PY R DS Q+ I + + + WR V +Y DN +G G + L ++LQ++
Sbjct: 134 TSLRSPYFFRATYEDSSQVHAIKAIIKLFGWREVVPVYIDNTFG--EGIMPRLTDSLQDI 191
Query: 197 SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV-LQASLDMTIHLFTEANRM 255
+ I R V+P ++ + + EL K+ + +RVFIV + +SL T+ F +A +
Sbjct: 192 NV-RIPYRSVIP----LNATDQDISVELLKMMNMPTRVFIVHMSSSLASTV--FIKAKEL 244
Query: 256 GLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTS 315
GL+ VWI+TN V + L S+N T I +MEG LGIK+Y P + FR +
Sbjct: 245 GLMKPGYVWILTNGVMDGLRSINETGIEAMEGVLGIKTYI-----PKSKDLETFRSRWKR 299
Query: 316 EYPEEDHFHPSIHALRAHDSIKIITEAI---GRLNYNISSPEM----------------- 355
+P+ + +++ L A+D+ + AI G N S+ +
Sbjct: 300 RFPQMEL---NVYGLWAYDATTALAMAIEDAGINNMTFSNVDTGKNVSELDGLGLSQFGP 356
Query: 356 -LLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT--SS 412
LL+ + + F GL+G F G+ L IVN++G + + FW G K
Sbjct: 357 KLLQTVSTVQFKGLAGDFHFVSGQ-LQPSVFEIVNMIGTGERSIGFWTEGNGLVKKLDQE 415
Query: 413 KHNVGDISSNIAAEGFTGP-----VIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEK 467
++G +S T P +IWPG ++ PKGW +P+N + +RIGVP R F
Sbjct: 416 PRSIGTLS--------TWPDHLKHIIWPGEAVSV-PKGWEIPTNGKKLRIGVPKRIGFTD 466
Query: 468 FVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHD-------GVYDDL 520
V + DP+ ++ K GF I+ F V+ + YD+ YEF P + G ++DL
Sbjct: 467 LVKVTRDPITNSTVVK-----GFCIDFFEAVIQAMPYDVSYEFFPFEKPNGEPAGNHNDL 521
Query: 521 INGVY 525
++ VY
Sbjct: 522 VHQVY 526
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 151/511 (29%), Positives = 243/511 (47%), Gaps = 63/511 (12%)
Query: 49 KQAITAMKIAVQNFNSDSRNH--KLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106
K + + +++ +F S + +L + + D D AA AA +LI ++VK I G T
Sbjct: 45 KVVMLCINMSISDFYSSNPQFETRLVVNVGDSKSDVVGAAIAALDLIKNKQVKAILGPWT 104
Query: 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN 166
+ + EI + +VPI+S++A +P+ S R PY +R DS Q++ I + + +
Sbjct: 105 SMQAHFLIEIGQKSRVPIVSYSA--TSPILTSLRSPYFLRATYEDSFQVQPIKAIIKLFG 162
Query: 167 WRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK 226
WR V +Y DN +G G + L +ALQ +I R+ + +I+ + EL K
Sbjct: 163 WREVVPVYIDNTFG--EGIMPRLTDALQ-----DINVRIPYRSVIAINATDHEISVELLK 215
Query: 227 VQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSME 286
+ + +RVF+V D+ F +A +GL+ VWI+TN V + L +N T + +ME
Sbjct: 216 MMNMPTRVFLV-HMYYDLASRFFIKAKELGLMEPGYVWILTNGVIDDLSLINETAVEAME 274
Query: 287 GTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI--- 343
G LGIK+Y K FR + S +P + S++ L A+D+ + AI
Sbjct: 275 GVLGIKTYIPKSPDLEK-----FRSRWRSLFPRVEL---SVYGLWAYDATTALAVAIEEA 326
Query: 344 -------------GRLNYNISSPEM---------LLRQMLSSDFSGLSGKIRFKDGELLN 381
GR N+S E LL+ +L+ F GL+G+ RF G+ L
Sbjct: 327 GTNNMTFSKVVDTGR---NVSELEALGLSQFGPKLLQTLLTVQFRGLAGEFRFFRGQ-LQ 382
Query: 382 ADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINR 441
IVN++ K + FW G K + IS+ + ++WPG +
Sbjct: 383 PSVFEIVNIINTGEKSIGFWKEGNGLVKKLDQQ-ASSISALSTWKDHLKHIVWPGE-ADS 440
Query: 442 NPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDH 501
PKGW +P+ + +RIGVP RT + V + DP+ ++ GF I+ F V+
Sbjct: 441 VPKGWQIPTKGKKLRIGVPKRTGYTDLVKVTRDPITNST-----VVTGFCIDFFEAVIRE 495
Query: 502 LNYDLPYEFVPHD-------GVYDDLINGVY 525
L YD+ YEF+P + G Y+DL+ VY
Sbjct: 496 LPYDVSYEFIPFEKPDGKTAGNYNDLVYQVY 526
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 161/537 (29%), Positives = 263/537 (48%), Gaps = 54/537 (10%)
Query: 15 LVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNS---DSRNHKL 71
LVF+ GV+ +V +G + D + ++ A+ +++ +F S +SR +L
Sbjct: 13 LVFIF-GVKLGKGQNTTIQVINVGVVTDVGTTASNLSLLAINMSLSDFYSSRPESRT-RL 70
Query: 72 SLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPA 131
L D D AA AA +LI ++VK I G T + + V E+ + QVPI+SF+A
Sbjct: 71 LLNFADSRDDVVGAAAAALDLIKNKEVKAILGPRTTMQASFVIEVGQKSQVPIISFSA-- 128
Query: 132 VTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191
+P S R PY R +DS Q++ I+++ + + WR V +YE+N +G G + L +
Sbjct: 129 TSPFLDSGRSPYFFRSTYDDSSQVQAISEIIKVFGWREVVPVYENNAFG--EGIMPGLTD 186
Query: 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTE 251
ALQ + + I R V+ P ++ + + +L K+ K +RVF+V + +F++
Sbjct: 187 ALQAI-NIRIPYRTVISPNAT----DDEISVDLLKLMTKPTRVFVVHMNRF-LASRVFSK 240
Query: 252 ANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRR 311
A GL+ + WI+TN V + L +N T I +M+G +GI++++ P E FR
Sbjct: 241 ARETGLMKQGYAWILTNGVIDHLVLMNGTDIEAMQGVIGIRTHF-----PISEELQTFRS 295
Query: 312 NFTSEYPEEDHFHPSIHALRAHDSIKIITEAI---GRLNY--------NISSPEM----- 355
+P + +I+ LRA+D+ + A+ G N NIS E
Sbjct: 296 RLAKAFPVSEL---NIYGLRAYDATTALAMAVEEAGTTNLTFSKMDGRNISDLEALSVSE 352
Query: 356 ----LLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTS 411
L+R + F GLSG F DG+ L+A IVNV+ + FW + G K
Sbjct: 353 YGPKLIRSLSQIQFKGLSGDYHFVDGQ-LHASVFEIVNVIDGGGILVGFWTQDKGLVKDL 411
Query: 412 SKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVI 471
S + G + + + P++WPG + PKGW +P+N + ++IGVP T F +FV +
Sbjct: 412 SPSS-GTTRTFSSWKNHLNPILWPGITLTV-PKGWEIPTNGKELQIGVPVGT-FPQFVKV 468
Query: 472 KDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKV 528
DPL + GF I+ F V+ + YD+ + F+P DD V+D V
Sbjct: 469 TTDPLTHET-----IVTGFCIDFFEAVIQAMPYDVSHRFIPFGD--DDGKTNVFDAV 518
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFN8|GLR26_ARATH Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 149/519 (28%), Positives = 250/519 (48%), Gaps = 50/519 (9%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHK--LSLQIRDHNRDPFQAATAAQELI 93
++G ++D N+ + ++ A+ +++ F + K + L IRD R AA +A LI
Sbjct: 37 QVGIVLDTNATLAALSLRAINMSLSEFYNTHNGFKTRIVLNIRDSKRTVVGAAASALYLI 96
Query: 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSE 153
K +V I G + + + ++ QVPI+SF+A + P+ S R PY IR +DS
Sbjct: 97 KKREVVAIIGPGNSMQAPFLINLGNQSQVPIISFSASS--PVLDSLRSPYFIRATHDDSS 154
Query: 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSI 213
Q+ I+ + + WR V IY DN +G G L L +A Q EI R+ S+
Sbjct: 155 QVHAISAIIESFRWREVVPIYADNEFG--EGILPYLVDAFQ-----EINVRIRYRSAISV 207
Query: 214 SDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANA 273
+ V+ EL K+ +RVFIV D+ LF+ A +G++ K VWIVTN +A+
Sbjct: 208 HSTDDLVKKELYKLMTMPTRVFIVHMLP-DLGSRLFSIAKEIGMMTKGYVWIVTNGIADQ 266
Query: 274 LDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSE---------YPEEDHFH 324
+ + + + +M G LG+K+Y+S S +R+ F E Y
Sbjct: 267 MSVMGESSLENMHGVLGVKTYFS-RSKELMYLETRWRKRFGGEELNNFECWGYDTATALA 325
Query: 325 PSIHAL-----------RAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIR 373
SI + + + S + L++ +S P+ LL+ + + F G++G+ +
Sbjct: 326 MSIEEISSNVNMSFSQTKRNTSRDDTGTDLDDLSFALSGPK-LLQALATVSFKGVAGRFQ 384
Query: 374 FKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVI 433
K+G+ L A T +IVN+ + + FW G K+ + G S+ + P+I
Sbjct: 385 LKNGK-LEATTFKIVNIEESGERTVGFWKSKVGLVKSLRVNQTGIKISHSSHR--LRPII 441
Query: 434 WPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIE 493
WPG+ I PKGW P+N + +RI VP + F FV + D N+N + GF I+
Sbjct: 442 WPGDTIFV-PKGWEFPTNAKKLRIAVPKKDGFNNFVEVTKD---ANTNAPTI--TGFCID 495
Query: 494 LFRLVVDHLNYDLPYEFVPHD-------GVYDDLINGVY 525
+F + + Y +PYE++P + G YD+++ V+
Sbjct: 496 VFDTAMRQMPYAVPYEYIPFETPDGKPRGSYDEMVYHVF 534
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 198 bits (503), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 146/518 (28%), Positives = 247/518 (47%), Gaps = 53/518 (10%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHK--LSLQIRDHNRDPFQAATAAQELI 93
K+G ++ +N + ++ A+ +++ F + K + L +RD + AA +A LI
Sbjct: 38 KVGIVLGSNVTLADLSLRAINMSLSEFYNTHNGFKTRIVLNVRDSKQTVVGAAASALYLI 97
Query: 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSE 153
K +V I G T + + + ++ +VPI+SF+A +PL S R PY IR +DS
Sbjct: 98 KKREVVAIIGPGTSMQAPFLINLGNQSKVPIISFSA--TSPLLDSLRSPYFIRATHDDSS 155
Query: 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSI 213
Q++ I+ + + WR V IY DN +G G L L +A Q EI R+ S+
Sbjct: 156 QVQAISAIIESFRWREVVPIYVDNEFG--EGILPNLVDAFQ-----EINVRIRYRSAISL 208
Query: 214 SDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANA 273
+ ++ EL K+ +RVFIV D+ LF+ A + ++ K VWIVTN +A+
Sbjct: 209 HYSDDQIKKELYKLMTMPTRVFIVHMLP-DLGSRLFSIAKEIDMLSKGYVWIVTNGIADL 267
Query: 274 LDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSE----------------- 316
+ + + + +M G LG+K+Y++ S A +++ F E
Sbjct: 268 MSIMGESSLVNMHGVLGVKTYFA-KSKELLHLEARWQKRFGGEELNNFACWAYDAATALA 326
Query: 317 --YPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
E H + S + + S I + L +S P+ LL + + F G++G+ +
Sbjct: 327 MSVEEIRHVNMSFNTTKEDTSRDDIGTDLDELGVALSGPK-LLDALSTVSFKGVAGRFQL 385
Query: 375 KDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIW 434
K+G+ L A T +I+N+ + + FW G K+ V S + P+IW
Sbjct: 386 KNGK-LEATTFKIINIEESGERTVGFWKSKVGLVKSLRVDKVSHSSRRLR------PIIW 438
Query: 435 PGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIEL 494
PG+ I PKGW P+N + +RI VP + F FV + D N+N + GF I++
Sbjct: 439 PGDTIFV-PKGWEFPTNAKKLRIAVPKKDGFNNFVEVTKDE---NTNVPTV--TGFCIDV 492
Query: 495 FRLVVDHLNYDLPYEFVPHD-------GVYDDLINGVY 525
F V+ + Y + YE++P D G YD+++ V+
Sbjct: 493 FNTVMSQMPYAVSYEYIPFDTPDGKPRGSYDEMVYNVF 530
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84W41|GLR36_ARATH Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 149/573 (26%), Positives = 265/573 (46%), Gaps = 95/573 (16%)
Query: 3 RFFFLVLIIASELVFVSPGVESASTNVNIE-EVTKIGAIVDANSQMGKQAITAMKIAVQN 61
++F L+LII + + ++ + V+ +V IG++ NS +GK AM AV++
Sbjct: 2 KWFLLMLIICNAV-----PLQGLTKIVSARPQVVNIGSVFTFNSLIGKVIKVAMDAAVED 56
Query: 62 FNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIAS 118
N+ L + + D + F + + + E V +I G + VVA +A+
Sbjct: 57 VNASPSILNTTTLRIIMHDTKYNGFMSIMEPLQFMESETVAII-GPQRSTTARVVAHVAT 115
Query: 119 RVQVPILSFAA--PAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED 176
+++PILSF+A P ++PL ++P+ IR + ND QM IAD+ + Y WR V AIY D
Sbjct: 116 ELKIPILSFSATDPTMSPL----QFPFFIRTSQNDLFQMAAIADIVQFYGWREVVAIYGD 171
Query: 177 NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236
+ YG + +A L + L I + LPP + +E + L KV +SR+ I
Sbjct: 172 DDYGRNG--VAALGDRLSE-KRCRISYKAALPPAPT----RENITDLLIKVALSESRI-I 223
Query: 237 VLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDS---LNTTVISSMEGTLGIKS 293
V+ AS + LF A +G++ VWI TN ++ +D+ L I++++G + ++
Sbjct: 224 VVHASFIWGLELFNVARNLGMMSTGYVWIATNWLSTIIDTDSPLPLDTINNIQGVITLRL 283
Query: 294 YYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI---------- 343
+ + ++ ++NF + H S +AL A+D++ ++ +AI
Sbjct: 284 HTPN---------SIMKQNFVQRWHNLTHVGLSTYALYAYDTVWLLAQAIDDFFKKGGNV 334
Query: 344 -------------GRLNYN----ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLR 386
G L+ + ++ L +L D GL+G+++F L
Sbjct: 335 SFSKNPIISELGGGNLHLDALKVFDGGKIFLESILQVDRIGLTGRMKFTSDRNLVNPAFD 394
Query: 387 IVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTG----PVIWPGNLINRN 442
++NV+G Y + +W + G S + + F+G V+WPG+ I +
Sbjct: 395 VLNVIGTGYTTIGYWFNHSGLSVMPADE--------MENTSFSGQKLHSVVWPGHSI-KI 445
Query: 443 PKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL 502
P+GW +N +RIGVP R FE+ V +K + + GF +++F ++ L
Sbjct: 446 PRGWVFSNNGRHLRIGVPNRYRFEEVVSVKSNGM----------ITGFCVDVFIAAINLL 495
Query: 503 NYDLPYEFVPHDGVYDD---------LINGVYD 526
Y +P+E V +D+ + GVYD
Sbjct: 496 PYAVPFELVAFGNGHDNPSNSELVRLITTGVYD 528
|
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 550 | ||||||
| 224077012 | 942 | glutamate-gated kainate-type ion channel | 0.916 | 0.535 | 0.565 | 1e-156 | |
| 255563044 | 843 | glutamate receptor 2 plant, putative [Ri | 0.838 | 0.546 | 0.573 | 1e-153 | |
| 224114740 | 867 | glutamate-gated kainate-type ion channel | 0.841 | 0.534 | 0.572 | 1e-147 | |
| 224077014 | 931 | glutamate-gated kainate-type ion channel | 0.881 | 0.520 | 0.523 | 1e-145 | |
| 357446857 | 1083 | Glutamate receptor 2.7 [Medicago truncat | 0.925 | 0.469 | 0.479 | 1e-140 | |
| 225443524 | 916 | PREDICTED: glutamate receptor 2.7-like [ | 0.878 | 0.527 | 0.5 | 1e-136 | |
| 147838919 | 916 | hypothetical protein VITISV_034689 [Viti | 0.878 | 0.527 | 0.502 | 1e-136 | |
| 147853054 | 2220 | hypothetical protein VITISV_037882 [Viti | 0.885 | 0.219 | 0.507 | 1e-134 | |
| 224114736 | 836 | glutamate-gated kainate-type ion channel | 0.809 | 0.532 | 0.542 | 1e-134 | |
| 147767805 | 950 | hypothetical protein VITISV_000970 [Viti | 0.92 | 0.532 | 0.495 | 1e-134 |
| >gi|224077012|ref|XP_002305092.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222848056|gb|EEE85603.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 301/532 (56%), Positives = 383/532 (71%), Gaps = 28/532 (5%)
Query: 6 FLVLIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSD 65
FL+ ++ S L+ S GVE A N + VT IGAI+D NS++GK+ TA+++AVQ+FN
Sbjct: 29 FLLPVLISILLIFSNGVE-AEIRTN-KLVTNIGAIIDVNSRIGKEEKTALELAVQDFNDI 86
Query: 66 SRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPIL 125
S NH+LSL R DP Q A AA+ELI ++KVKVI GM+ WEE A+VA I ++ Q+PIL
Sbjct: 87 STNHELSLHFRHPGEDPLQVAYAAEELIKEKKVKVIIGMDNWEEAALVANIGNQYQIPIL 146
Query: 126 SFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185
SFA PA+TP + RWP+LIRMAS+ SEQM+CIA L R +NWR+V IYEDNVYGG+SG
Sbjct: 147 SFATPAITPPLTTLRWPFLIRMASDGSEQMRCIAALVRCHNWRKVVVIYEDNVYGGESGN 206
Query: 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRVFIVLQASLDM 244
LALL+EALQ V SEI+ RLVLPP S +DP++ V+ EL K+Q D +SRVFIVLQ+SL M
Sbjct: 207 LALLSEALQEV-GSEIEYRLVLPPFSLSTDPEDVVQHELIKLQKDTESRVFIVLQSSLPM 265
Query: 245 TIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKE 304
LF EA MGLVG+D+ WIV+N+V + LDS+N +VISSM GTLGI++YYS SS Y+
Sbjct: 266 LTCLFREAKNMGLVGRDTAWIVSNSVTSFLDSMNNSVISSMGGTLGIQTYYSSSSS-YQR 324
Query: 305 FSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSD 364
F A FR+ F +EY +ED+F P I ALRA+DSI ++T+AI +L + SSP+MLL +L SD
Sbjct: 325 FEAQFRKIFRAEYLDEDNFLPGIQALRAYDSIGMVTQAIEKLGSDSSSPKMLLNSVLGSD 384
Query: 365 FSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT---------SSKHN 415
F+GL+G+I FKD L A LRIVNVVGKKYKELDFWLPNFGFSKT S N
Sbjct: 385 FTGLTGEIHFKDAMLSQAPILRIVNVVGKKYKELDFWLPNFGFSKTLHPQEGKERCSNSN 444
Query: 416 VGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDP 475
V + + +A GPVIWPG+L RNPKGWAMP+N +P+RI VP RT F+KFV +
Sbjct: 445 VCNNTGCLA-----GPVIWPGDLNGRNPKGWAMPTNAKPLRIVVPKRTSFDKFVTFQ--- 496
Query: 476 LNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDK 527
G + +GF I++F VV+ LNY LP+EF HDG+YDD+I GVY+K
Sbjct: 497 -TGEALP-----EGFCIDVFNEVVERLNYPLPHEFFEHDGLYDDMIAGVYNK 542
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563044|ref|XP_002522526.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223538217|gb|EEF39826.1| glutamate receptor 2 plant, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/474 (57%), Positives = 347/474 (73%), Gaps = 13/474 (2%)
Query: 55 MKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114
M IAV+NFN+ SR HKLSL +DH R P QAA AA+ LI K+ VK I GM+ WEE A+VA
Sbjct: 1 MDIAVRNFNNASRKHKLSLHFQDHQRQPLQAAQAAERLIKKKAVKAIIGMDIWEEAALVA 60
Query: 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIY 174
+I S+ QVP+ SF+APA TP RWP+L+RM N+SEQM+CIA+LAR YNWRRV ++
Sbjct: 61 DIGSQSQVPVFSFSAPATTPPLAQSRWPFLVRMVYNNSEQMRCIAELARLYNWRRVVTVH 120
Query: 175 EDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234
EDN GGD G+L LL++ALQ V S +I+ LVLPP S DPKE ++ EL K+Q+ +SRV
Sbjct: 121 EDNTNGGDFGELILLSQALQEVGS-QIEHSLVLPPFSLPFDPKEIIKEELTKLQEVKSRV 179
Query: 235 FIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSY 294
FIVLQ SL + IHL EA MG+VGKDSVWI+T+TV + LDS++T+VI +MEG LGIK+
Sbjct: 180 FIVLQTSLPLAIHLLREAKEMGMVGKDSVWILTDTVTSFLDSVDTSVILTMEGALGIKTN 239
Query: 295 YSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPE 354
YSD SS YK F + FRRNF+S YPEED+F P +ALRA+DSI I +A+ R++ NIS+ +
Sbjct: 240 YSDSSSEYKSFYSQFRRNFSSTYPEEDNFDPGFYALRAYDSITTIIKAMERMSSNISNSK 299
Query: 355 MLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKH 414
+ L +LSS+F+GLSG+I F+ GELL++ LRIVNVVGKKYKE+DFWLP FGFSK
Sbjct: 300 VFLNDILSSNFTGLSGQIHFRSGELLHSPKLRIVNVVGKKYKEIDFWLPKFGFSKGRKD- 358
Query: 415 NVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDD 474
+ + + G GPV WPG+L R PKGWAMPSN +PM IGVP RT FEKFV +
Sbjct: 359 --DEDENGGGSMGLEGPVNWPGDL-KRIPKGWAMPSNAKPMIIGVPGRTSFEKFVKV--- 412
Query: 475 PLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKV 528
+N + N RYDG+ IELFR V + L Y L + FVP++G+YDDL+N +Y+K
Sbjct: 413 -VNASEN----RYDGYCIELFRKVTEVLGYSLYHRFVPYNGIYDDLVNHLYNKT 461
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114740|ref|XP_002316843.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222859908|gb|EEE97455.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/479 (57%), Positives = 338/479 (70%), Gaps = 16/479 (3%)
Query: 55 MKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114
M+IAVQNFN+ SRNHKLSL ++ DP QAA AA+ELI ++KVKVI GM+ WEE A+VA
Sbjct: 1 MEIAVQNFNNISRNHKLSLHFKNPKGDPLQAAYAAEELIKEKKVKVIIGMDKWEEAALVA 60
Query: 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIY 174
I ++ QVPILSFAAPA TP+ S RWP+LIRMAS+ SEQM+CIA L YNW+RV IY
Sbjct: 61 NIGNQSQVPILSFAAPARTPILTSLRWPFLIRMASDGSEQMRCIAALVHSYNWKRVVVIY 120
Query: 175 EDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSR 233
ED V G + G LALL EALQ V SEI+ RLVLPP S ++DP + V+ EL K+Q++ ++R
Sbjct: 121 EDEVLGSEYGNLALLTEALQEV-GSEIEYRLVLPPFSFLTDPIDVVQDELIKLQNQTEAR 179
Query: 234 VFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKS 293
VFIVLQ+SL M +F EA + GLVG D+VWIV N++ + LDS++ V SSMEGTLGIK+
Sbjct: 180 VFIVLQSSLPMLTCIFGEAKKAGLVGNDTVWIVGNSITSFLDSVDNPVFSSMEGTLGIKT 239
Query: 294 YYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSP 353
YYS +SS YK F ALF++ F SEY E+ F P I ALRA+DSI IIT+AI +L NI+SP
Sbjct: 240 YYSSNSS-YKRFEALFQKIFRSEYLNENDFQPGIQALRAYDSIGIITQAIEKLGSNITSP 298
Query: 354 EMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT--- 410
+M L +L SDF+GLSG+IRFKDG L ++ TLRIVNVVGKK KELDFWLPN GFS T
Sbjct: 299 KMFLNSVLESDFTGLSGRIRFKDGMLSDSPTLRIVNVVGKKCKELDFWLPNCGFSDTLYV 358
Query: 411 -SSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFV 469
K + G +GPVIWPG+L R+PKGWAMPS +P+RI VP RT F+KFV
Sbjct: 359 EQGKGRCRNNDGGKTTGGLSGPVIWPGDLNGRDPKGWAMPSEAKPLRIIVPRRTSFDKFV 418
Query: 470 VIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKV 528
+ R GF ++LF VV LNY +P F DG Y D+I GVY+K
Sbjct: 419 TFRIG---------EKRPVGFCVDLFDEVVKRLNYSIPPVFFEFDGQYGDMIEGVYNKT 468
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224077014|ref|XP_002305093.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222848057|gb|EEE85604.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/514 (52%), Positives = 347/514 (67%), Gaps = 29/514 (5%)
Query: 17 FVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR 76
F+ + + ++N +VT IGAI+D NS+ GK+ TAM+IAVQ FN+ S HKLSL +
Sbjct: 34 FLVTTLPHGAKDINDSKVTNIGAIIDVNSRTGKEEKTAMEIAVQKFNNGSPKHKLSLYFQ 93
Query: 77 DHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS 136
D P QAA AA++LI + +V+VI GME WEE A+VA+I S+ +VP++SF+APA+TP
Sbjct: 94 DSRSSPLQAARAAEKLIEENEVEVIIGMERWEEAALVADIGSQFKVPVISFSAPAITPPL 153
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNV 196
S RWP+LIRMA DS Q++CIA + + YNWRRV +YED YG
Sbjct: 154 ASSRWPFLIRMAHGDSNQIRCIAAVIQSYNWRRVVTVYEDYAYG---------------- 197
Query: 197 SSSEIQSRLVLPPISSISDPKEAVRGELKKV--QDKQSRVFIVLQASLDMTIHLFTEANR 254
EI+ LVLPP S +SDPK+ VR EL K+ + QSRVFIVLQ+SL M IHLF EA +
Sbjct: 198 ---EIEYNLVLPPFSFVSDPKDVVREELTKLLSEKIQSRVFIVLQSSLPMMIHLFREAKK 254
Query: 255 MGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFT 314
MGLVG D VWI+T+TV N LD +NT+VI SMEG LGIK+YY D++S ++ F FR+ F
Sbjct: 255 MGLVGNDMVWILTDTVTNFLDIVNTSVIHSMEGALGIKNYYFDNTSSFQTFLTQFRQKFI 314
Query: 315 SEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
SEYPEE + P +ALRAHDSI IIT+A+ RL+ N SP+ L ++ F GLSG+I
Sbjct: 315 SEYPEECCYEPGFYALRAHDSISIITQAMDRLSSNTRSPKSFLDNTFTTSFVGLSGEINV 374
Query: 375 KDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIW 434
K GELL++ LRIVNVVG++YKELDFW+P FGFS G + A GPVIW
Sbjct: 375 KAGELLHSPMLRIVNVVGRRYKELDFWIPEFGFSNQPVVAKDG-AENRTEAIRLKGPVIW 433
Query: 435 PGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIEL 494
PG+L RNPKGW MP++ + M IGVP RT FEKFV + + N+ K YDGF IEL
Sbjct: 434 PGDL-QRNPKGWLMPNDTKRMIIGVPGRTSFEKFVKV-----STNAAGKK-EYDGFCIEL 486
Query: 495 FRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKV 528
F V+ L YDLPY+F+P++G YDDL++ VY+K
Sbjct: 487 FYKVLGVLAYDLPYQFIPYNGTYDDLVDHVYNKT 520
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357446857|ref|XP_003593704.1| Glutamate receptor 2.7 [Medicago truncatula] gi|355482752|gb|AES63955.1| Glutamate receptor 2.7 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 253/528 (47%), Positives = 367/528 (69%), Gaps = 19/528 (3%)
Query: 4 FFFLVLIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFN 63
+ F VL++ L++ G+ + N + +V IG I+D +S++GK+ AM IA Q++N
Sbjct: 15 WLFFVLLVPFALIY---GIRDETMNSD-NKVISIGVIIDGDSRIGKEQEVAMDIAAQSYN 70
Query: 64 SDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVP 123
+ S+N+KL+L ++ +D +A A+E+IN +KV+VI GM+TW+E A+VAE+ S+ QVP
Sbjct: 71 NTSKNYKLALYFKNSTKDTLKAIKIAEEMINVQKVQVIIGMQTWQEAAMVAEVGSKAQVP 130
Query: 124 ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDS 183
++SF AP +TP M RWP+L+R+A+ + +KCIA++ + Y+W++V IYEDN YGGD
Sbjct: 131 VISFVAPTITPPLMEARWPFLVRLANTGTAYIKCIAEIVQAYSWKKVVVIYEDNGYGGDY 190
Query: 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243
G LALLAEALQ+V S I+ RLVLPPISS+ DP+E V E+ K++ QSRVFIVL++SL+
Sbjct: 191 GMLALLAEALQDVDSM-IEHRLVLPPISSLQDPEELVSEEMLKLKQTQSRVFIVLKSSLE 249
Query: 244 MTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYK 303
M IH+F EA+++GLV K+S W++ ++AN LDS+N + IS MEG LGIK+YYS+ S YK
Sbjct: 250 MAIHVFKEASKVGLVDKESAWMIPESIANLLDSVNKSAISYMEGALGIKTYYSERSREYK 309
Query: 304 EFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNI-SSPEMLLRQMLS 362
EF A FRR F S+ PEED+ +P +AL+A+DSI I+T+A+ R+ SSP+ LLR++LS
Sbjct: 310 EFEAQFRRTFWSKNPEEDNRYPGFYALQAYDSINIVTQALNRMTSRKNSSPKTLLREILS 369
Query: 363 SDFSGLSGKIRFKDGELLNAD-TLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISS 421
+F GLSG I+ + G+L+ + LRIVNV GK YKEL FW GF ++ H+ G +
Sbjct: 370 CNFLGLSGHIQLESGQLMQKNLVLRIVNVAGKSYKELCFWTQQHGF---TTIHHAGQGGN 426
Query: 422 NIAA--EGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGN 479
+A + F G V WPGN R PKGW MP+ + P+RI V +RT F +FV + + G
Sbjct: 427 KVAGNTKCFRG-VRWPGNWA-RIPKGWNMPTEKNPLRIAVRSRTSFSRFVKV----VYGQ 480
Query: 480 SNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDK 527
+ + + +Y GF IE+F V++HL YDLPY + P DG Y+DL+ VY+K
Sbjct: 481 NGEPD-KYTGFCIEIFEHVLNHLGYDLPYSYYPIDGTYNDLVQLVYNK 527
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443524|ref|XP_002272216.1| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/500 (50%), Positives = 349/500 (69%), Gaps = 17/500 (3%)
Query: 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELIN 94
T IGAIVDA+S+ GK+ TAM+IA+ FN DS+N +L L + +P QAA AQELI
Sbjct: 41 TNIGAIVDASSRKGKEEKTAMEIAISRFNRDSKNLQLFLHFGNSTGEPIQAAFTAQELIK 100
Query: 95 KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQ 154
+++V VI G +TW+E A+VA++ +R QVP+LS AA +TP RWP+L +M SN SEQ
Sbjct: 101 EKEVGVIVGTDTWQEAALVADVGNRAQVPVLSLAASTITPPLRQIRWPFLTQMGSNVSEQ 160
Query: 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSIS 214
++CI+ + Y+W+RV +YED+ +GGDSG LA L+EALQ S+ EI+ +VLPPISS+S
Sbjct: 161 IRCISAIVGSYHWQRVIVVYEDDAHGGDSGMLAPLSEALQYFST-EIEYTVVLPPISSLS 219
Query: 215 DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANAL 274
DPKEA+ EL K+ QSRVFIVL++S M HLF EA RMG + ++S WI+T+T+++ L
Sbjct: 220 DPKEAINEELMKLLSIQSRVFIVLKSSPLMATHLFQEARRMGFMARESAWIITDTISSFL 279
Query: 275 DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHD 334
DS++T+ IS +EG LGIK+YYS S P+ EFSA F++ F +EYPEED+ P IHALRA+D
Sbjct: 280 DSIDTSAISYIEGALGIKTYYSKTSRPFLEFSAQFQKMFENEYPEEDNTKPGIHALRAYD 339
Query: 335 SIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADT--LRIVNVVG 392
SI +I A+ RL + +P+ LL +LSS+F+GLSGKI F+ G+ L++++ LRI+N+VG
Sbjct: 340 SISVIANALVRLASDTITPKRLLETILSSNFNGLSGKISFQGGDQLDSNSLPLRIINLVG 399
Query: 393 KKYKELDFWLPNFG--FSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPS 450
K YKELDFW + FS+ + N SS + GPVIWPG L R PKGW MP+
Sbjct: 400 KGYKELDFWTQDLDHPFSREGGEAN----SSRRTTKVLDGPVIWPGYL-KRVPKGWEMPT 454
Query: 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL--NYDLPY 508
+++ ++IG+P T F+KFV + + + D +Y GF I++FR V+ L NY LPY
Sbjct: 455 DEKRLKIGIPANTSFDKFVKVDEAQI-----DPEKKYTGFCIDIFREVIKILEQNYSLPY 509
Query: 509 EFVPHDGVYDDLINGVYDKV 528
+F P+DG YD+L++ VY K
Sbjct: 510 DFHPYDGTYDELVDRVYTKT 529
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838919|emb|CAN63664.1| hypothetical protein VITISV_034689 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/500 (50%), Positives = 348/500 (69%), Gaps = 17/500 (3%)
Query: 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELIN 94
T IGAIVDA+S+ GK+ TAM+IA+ FN DS+N +L L + +P QAA AQELI
Sbjct: 41 TNIGAIVDASSRKGKEEKTAMEIAISRFNRDSKNLQLFLHFGNSTGEPIQAAFTAQELIK 100
Query: 95 KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQ 154
+++V VI G +TW+E A+VA++ +R QVP+LS AA +TP RWP+L M SN SEQ
Sbjct: 101 EKEVGVIVGTDTWQEAALVADVGNRAQVPVLSLAASTITPPLRQIRWPFLXXMGSNVSEQ 160
Query: 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSIS 214
++CI+ + Y+W+RV +YED+ +GGDSG LA L+EALQ SS EI+ +VLPPISS+S
Sbjct: 161 IRCISAIVGSYHWQRVIVVYEDDAHGGDSGMLAPLSEALQYFSS-EIEYTVVLPPISSLS 219
Query: 215 DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANAL 274
DPKEA+ EL K+ QSRVFIVL++S M HLF EA RMG + ++S WI+T+T+++ L
Sbjct: 220 DPKEAINEELMKLLSIQSRVFIVLKSSPLMATHLFQEARRMGFMARESAWIITDTISSFL 279
Query: 275 DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHD 334
DS++T+ IS +EG LGIK+YYS S P+ EFSA F++ F +EYPEED+ P IHALRA+D
Sbjct: 280 DSIDTSAISYIEGALGIKTYYSKTSRPFLEFSAQFQKMFENEYPEEDNTKPGIHALRAYD 339
Query: 335 SIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADT--LRIVNVVG 392
SI +I A+ RL + +P+ LL +LSS+F+GLSGKI F+ G+ L++++ LRI+N+VG
Sbjct: 340 SISVIANALVRLASDTITPKRLLETILSSNFNGLSGKISFQGGDQLDSNSLPLRIINLVG 399
Query: 393 KKYKELDFWLPNFG--FSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPS 450
K YKELDFW + FS+ + N SS + GPVIWPG L R PKGW MP+
Sbjct: 400 KGYKELDFWTQDLDHPFSREGGEAN----SSRRTTKVLDGPVIWPGYL-KRVPKGWEMPT 454
Query: 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL--NYDLPY 508
+++ ++IG+P T F+KFV + + + D +Y GF I++FR V+ L NY LPY
Sbjct: 455 DEKRLKIGIPANTSFDKFVKVDEAQI-----DPEKKYTGFCIDIFREVIKILEQNYSLPY 509
Query: 509 EFVPHDGVYDDLINGVYDKV 528
+F P+DG YD+L++ VY K
Sbjct: 510 DFHPYDGTYDELVDRVYTKT 529
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853054|emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/504 (50%), Positives = 345/504 (68%), Gaps = 17/504 (3%)
Query: 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELIN 94
T IGAI+DANS+ GK+ TAMKIAV FN++S NHKLSL R+ + ++AA A+ELI
Sbjct: 30 TVIGAIIDANSRKGKEEKTAMKIAVDKFNNNSNNHKLSLIFRNFTGELYRAALIAEELIK 89
Query: 95 KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQ 154
+EKV+VI GM TW++ A+ AEI ++ QVP+LS AA A S P LI+M SN EQ
Sbjct: 90 EEKVQVIVGMNTWQQAALAAEIENQAQVPVLSLAASASVRPSRRLGRPTLIQMGSNIYEQ 149
Query: 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSIS 214
++CI+ + R Y+WR V AIYED+ YGG++ L L +EALQ V S EI+ L LPPISS+S
Sbjct: 150 VRCISAIVRSYHWRGVIAIYEDDAYGGNAEMLTLFSEALQRVGS-EIEYHLSLPPISSLS 208
Query: 215 DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANAL 274
DP+E+V EL K+ QSRVFIVLQ+SL M HLF EA RM +GKDS WI+T+++++ L
Sbjct: 209 DPRESVYQELLKLLSTQSRVFIVLQSSLPMATHLFQEARRMDFMGKDSAWIITDSISSFL 268
Query: 275 DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHD 334
DS++T+VI MEG LGIKSYYS + P+ EFSA F++NF SE PEE++ P IHALRA D
Sbjct: 269 DSMDTSVIPYMEGALGIKSYYSKSNRPFLEFSAQFQKNFKSENPEENNTQPGIHALRADD 328
Query: 335 SIKIITEAIGRL-NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTL--RIVNVV 391
SI +I A+ RL + + ++P+M+L+ +L+ +FSGLSG I F+ G+L N+++L RI+NVV
Sbjct: 329 SIAVIARALERLASDDTNTPKMMLKNILARNFSGLSGNIIFEGGDLSNSNSLLFRIINVV 388
Query: 392 GKKYKELDFWLPNFG--FSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMP 449
YKELDFW + F + N SS + GPVIWPG LI R PKGW MP
Sbjct: 389 RTGYKELDFWTQDLDNPFRREGRDKN----SSRNTTKVLDGPVIWPGYLIKRVPKGWEMP 444
Query: 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL--NYDLP 507
++ +P++IG+P +T F+KFV + + + RY GF I++FR V+ L NY LP
Sbjct: 445 TDAKPLKIGIPAKTSFDKFVKVDEAEAEADK-----RYSGFCIDIFREVLKILEQNYSLP 499
Query: 508 YEFVPHDGVYDDLINGVYDKVNYF 531
YEF P G YD+L++ VY+K Y
Sbjct: 500 YEFHPVIGTYDELVDFVYNKTLYL 523
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114736|ref|XP_002316842.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222859907|gb|EEE97454.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 260/479 (54%), Positives = 319/479 (66%), Gaps = 34/479 (7%)
Query: 55 MKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114
M+IAVQNFN+ S NHKLSL + DP QAA AA+ELI ++KV+VI GM+ WEE A+VA
Sbjct: 1 MEIAVQNFNNISSNHKLSLHFKHPKGDPLQAAYAAEELIKEKKVEVIIGMDKWEEAALVA 60
Query: 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIY 174
I ++ QVPILSFAAPA TP+S S RWP+LIRMAS+ SEQM CIA L YNW+R IY
Sbjct: 61 NIGNQSQVPILSFAAPARTPISTSLRWPFLIRMASDGSEQMSCIAALVHSYNWKRAVVIY 120
Query: 175 EDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSR 233
ED+V G +SG ALL EALQ V SEI+ RLVLPP S ++DP + V+ EL K++ + ++R
Sbjct: 121 EDDVLGSESGNFALLTEALQEV-GSEIEYRLVLPPFSFLTDPIDVVQDELMKLKHQTEAR 179
Query: 234 VFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKS 293
VFIVLQ+SL M +F EA + GLVG D+VWIV N+ TLGIK+
Sbjct: 180 VFIVLQSSLPMLTCIFGEAKKAGLVGNDTVWIVANS------------------TLGIKT 221
Query: 294 YYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSP 353
+YS +SS YK F ALF++ F SEY ED F P I ALRA DSI I+T+AI +L NI+S
Sbjct: 222 HYSSNSS-YKRFEALFQKLFRSEYLNEDDFEPGIQALRASDSIGIVTQAIEKLGSNITSQ 280
Query: 354 EMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT--- 410
+M L +L SDF+GLSG+IRFKDG L +A TLRIVNVVGKK KELDFWLPN GFS T
Sbjct: 281 KMFLNSVLESDFTGLSGRIRFKDGMLSDAPTLRIVNVVGKKCKELDFWLPNCGFSDTLYV 340
Query: 411 -SSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFV 469
K + + G +GPVI PG+L R+PKGWAMPS +PMRI VP RT F KFV
Sbjct: 341 EQGKGRCRNSDGGKTSGGLSGPVICPGDLNGRDPKGWAMPSEAKPMRIIVPKRTSFNKFV 400
Query: 470 VIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKV 528
+ R GF ++LF VV LNY +P F DG Y D+I GV++K
Sbjct: 401 TFRTG---------EERPVGFCVDLFDEVVKRLNYSIPPVFFEFDGQYGDMIQGVFNKT 450
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147767805|emb|CAN62456.1| hypothetical protein VITISV_000970 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 266/537 (49%), Positives = 363/537 (67%), Gaps = 31/537 (5%)
Query: 4 FFFL----VLIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAV 59
FF+ +L+IAS L +++ G + T+ T IGAI+DANS+ GK+ ITAMKIAV
Sbjct: 12 FFYFSLTSILLIASHLGYIT-GTAADHTS------TIIGAIIDANSRKGKEEITAMKIAV 64
Query: 60 QNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASR 119
FN++S+NHKLSL R+ + ++AA A+ELI ++KV+VI GM+TW++ A+ AEI ++
Sbjct: 65 DKFNNNSKNHKLSLVFRNFTGELYRAALTAEELIKEKKVQVIVGMDTWQQAALAAEIGNQ 124
Query: 120 VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVY 179
QVP+LS AA A S P L++M +N SEQ++CI+ + Y+W+RV AIYED+ Y
Sbjct: 125 AQVPVLSLAASASVRPSRQLGRPTLVQMGTNVSEQIRCISAIVHSYHWQRVIAIYEDDAY 184
Query: 180 GGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQ 239
GG++ L +L+EALQ V SEI+ L LPPISS+SDP+ AV EL K+ QSRVFIVLQ
Sbjct: 185 GGNAEMLTILSEALQGV-GSEIEYHLSLPPISSLSDPRGAVHQELLKLLSTQSRVFIVLQ 243
Query: 240 ASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDS 299
+SL M LF EA RM +GKDS WI+T+++++ LDS +T+VIS MEG LGIKSYYS
Sbjct: 244 SSLPMATQLFQEARRMDFMGKDSAWIITDSISSFLDSRDTSVISYMEGALGIKSYYSQSK 303
Query: 300 S--PYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLL 357
S P+ EFSA F++NF SE P+ED+ P IHALRA+DSI +IT A+ RL + +P MLL
Sbjct: 304 SNRPFLEFSAQFQKNFKSENPDEDNAQPGIHALRAYDSIAVITRALERLASD-DTPNMLL 362
Query: 358 RQMLSSDFSGLSGKIRFKDGELLNADTL--RIVNVVGKKYKELDFWLPNFG--FSKTSSK 413
+ +LSS+FSGLSGKI F+ G+L +++L RI+NVV YK LDFW + FS+
Sbjct: 363 KNILSSNFSGLSGKIIFEGGDLSISNSLPFRIINVVRTDYKVLDFWTQDLDNPFSREGGD 422
Query: 414 HNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKD 473
N SS + GPVIWPG L R PKGW MP++ +P++IG+P T F+KFV + +
Sbjct: 423 KN----SSRNTTKVLDGPVIWPGYL-KRVPKGWEMPTDAKPLKIGIPANTSFDKFVKVDE 477
Query: 474 DPLNGNSNDKNLRYDGFSIELFRLVVDHL--NYDLPYEFVPHDGVYDDLINGVYDKV 528
+ D RY GF I++FR V+ L NY LPY+F P G YD+L++ VY+K
Sbjct: 478 AQI-----DPEKRYTGFCIDIFRQVLKILEQNYSLPYDFYPVVGTYDELVDCVYNKT 529
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 550 | ||||||
| TAIR|locus:2066148 | 940 | GLR2.9 "glutamate receptor 2.9 | 0.829 | 0.485 | 0.309 | 5e-53 | |
| TAIR|locus:2066107 | 952 | GLR2.7 "glutamate receptor 2.7 | 0.84 | 0.485 | 0.298 | 3.1e-52 | |
| TAIR|locus:2066086 | 947 | GLR2.8 "glutamate receptor 2.8 | 0.850 | 0.494 | 0.305 | 3.8e-52 | |
| TAIR|locus:2181196 | 901 | GLR2.1 "glutamate receptor 2.1 | 0.901 | 0.550 | 0.306 | 1.7e-51 | |
| TAIR|locus:2047251 | 895 | GLR2.3 "glutamate receptor 2.3 | 0.892 | 0.548 | 0.290 | 1.2e-49 | |
| TAIR|locus:2047256 | 920 | GLR2.2 "glutamate receptor 2.2 | 0.894 | 0.534 | 0.298 | 1e-48 | |
| TAIR|locus:2081805 | 903 | GLR3.6 "glutamate receptor 3.6 | 0.870 | 0.530 | 0.279 | 1.3e-41 | |
| TAIR|locus:2122128 | 912 | GLUR2 "glutamate receptor 2" [ | 0.676 | 0.407 | 0.273 | 4.8e-40 | |
| TAIR|locus:2062586 | 921 | GLR5 "glutamate receptor 5" [A | 0.856 | 0.511 | 0.262 | 1.4e-37 | |
| TAIR|locus:2207165 | 959 | GLR3.4 "AT1G05200" [Arabidopsi | 0.832 | 0.477 | 0.256 | 1.1e-32 |
| TAIR|locus:2066148 GLR2.9 "glutamate receptor 2.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 5.0e-53, P = 5.0e-53
Identities = 161/520 (30%), Positives = 274/520 (52%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNH--KLSLQIRDHNRDPFQAATAAQELI 93
K+G ++D N+ K +T++K+AV +F +D N+ +L+L +RD D QA+ AA +LI
Sbjct: 31 KVGVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDSMEDTVQASAAALDLI 90
Query: 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSE 153
E+V I G + + ++A++ QVP ++F+A +PL S + PY +R +DS
Sbjct: 91 KTEQVSAIIGPINSMQADFMIKLANKTQVPTITFSA--TSPLLTSIKSPYFVRATIDDSS 148
Query: 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSI 213
Q++ IA + + + WRRV AIY DN +G G + L +ALQ+V E++ R V+PP +I
Sbjct: 149 QVRAIASIFKFFRWRRVVAIYVDNEFG--EGFMPFLFDALQDV---EVK-RSVIPP-EAI 201
Query: 214 SDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANA 273
D ++ EL+K+ ++Q+RVF+V S + + +F A +G++ + VW++TN + +
Sbjct: 202 DDE---IQKELRKLMERQARVFVVHMES-SLALRVFQIARDIGMMEEGYVWLMTNGMTHM 257
Query: 274 LDSLNT-TVISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEYPE-EDHFHPSIHALR 331
+ +N ++++EG LG++ +F ++R F E P D + + AL
Sbjct: 258 MRHINNGRSLNTIEGVLGVRSHVPKSKE-LGDFRLRWKRTFEKENPSMRDDLN--VFALW 314
Query: 332 AHDSIKIITEAIGRLN-----YNISSPEMLLR---------------QMLSSD--FSGLS 369
A+DSI + +A+ + N Y+ S R Q S+ F+GL+
Sbjct: 315 AYDSITALAKAVEKANTKSLWYDNGSTLSKNRTDLGNVGVSLYGPSLQKAFSEVRFNGLA 374
Query: 370 GKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFT 429
G+ + DG+L + I+N VG + + + FW P G +S SN +
Sbjct: 375 GEFKLIDGQL-QSPKFEIINFVGNEERIIGFWTPRDGLMDATS--------SN---KKTL 422
Query: 430 GPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDG 489
GPVIWPG PKGW +P + +R+GVP + F FV + +P+ +N K G
Sbjct: 423 GPVIWPGKS-KIVPKGWEIPGKK--LRVGVPMKKGFFDFVKVTINPI---TNKKTPT--G 474
Query: 490 FSIELFRLVVDHLNYDLPYEFVPHDGV--YDDLINGVYDK 527
++IE+F + L Y + E+V + Y++L+ VYDK
Sbjct: 475 YAIEIFEAALKELPYLVIPEYVSFESPNNYNNLVYQVYDK 514
|
|
| TAIR|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 3.1e-52, P = 3.1e-52
Identities = 155/519 (29%), Positives = 269/519 (51%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNF---NSDSRNHKLSLQIRDHNRDPFQAATAAQEL 92
K+G ++D ++ K +T++ I++ +F +SD +L++ IRD D QA++AA +L
Sbjct: 40 KVGVVLDLHTSFSKLCLTSINISLSDFYKYHSDYTT-RLAIHIRDSMEDVVQASSAALDL 98
Query: 93 INKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDS 152
I E+V I G T + + +A + QVP ++F+A PL S PY +R +DS
Sbjct: 99 IKNEQVSAIIGPRTSMQAEFMIRLADKSQVPTITFSATC--PLLTSINSPYFVRATLDDS 156
Query: 153 EQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS 212
Q+K IA + + + WR V AIY DN +G G L LL +ALQ+V + + +R ++P
Sbjct: 157 SQVKAIAAIVKSFGWRNVVAIYVDNEFG--EGILPLLTDALQDVQAFVV-NRCLIP--QE 211
Query: 213 ISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272
+D + + EL K+ Q+RVF+V + F +A +G++ + VW++T+ V N
Sbjct: 212 AND--DQILKELYKLMTMQTRVFVVHMPPT-LGFRFFQKAREIGMMEEGYVWLLTDGVMN 268
Query: 273 ALDSLNT-TVISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEYPEEDHFHPSIHALR 331
L S + + +M+G LG++ K F + + F + +E+ +I ALR
Sbjct: 269 LLKSNERGSSLENMQGVLGVRSHIPKSKK-LKNFRLRWEKMFPKKGNDEEM---NIFALR 324
Query: 332 AHDSIKIITEAIGRLN-----YN--ISSPE---------------MLLRQMLSSDFSGLS 369
A+DSI + A+ + N Y+ I+S LL+ + + F+GL+
Sbjct: 325 AYDSITALAMAVEKTNIKSLRYDHPIASGNNKTNLGTLGVSRYGPSLLKALSNVRFNGLA 384
Query: 370 GKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFT 429
G+ +G+L + ++N++G + + + W P+ G SK+ + +
Sbjct: 385 GEFELINGQL-ESSVFDVINIIGSEERIIGLWRPSNGIVNAKSKNTTSVLGERL------ 437
Query: 430 GPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDG 489
GPVIWPG + PKGW +P+N + +R+G+P + F +FV K DP++ N+ + G
Sbjct: 438 GPVIWPGKSKDV-PKGWQIPTNGKMLRVGIPVKKGFLEFVDAKIDPIS-NA----MTPTG 491
Query: 490 FSIELFRLVVDHLNYD-LP-Y-EFVPHDGVYDDLINGVY 525
+ IE+F V+ L Y +P Y F+ D YD+++ VY
Sbjct: 492 YCIEIFEAVLKKLPYSVIPKYIAFLSPDENYDEMVYQVY 530
|
|
| TAIR|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 3.8e-52, P = 3.8e-52
Identities = 162/531 (30%), Positives = 269/531 (50%)
Query: 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHK--LSLQIRDHNRDPFQAATA 88
I E+ K+G ++D N+ K +T++ +A+ +F D N++ L+L +RD +D QA+ A
Sbjct: 30 ISEI-KVGVVLDLNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDSMKDTVQASAA 88
Query: 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMA 148
A +LI E+V I G + + ++A++ QVP +SF+A +PL S + Y +R
Sbjct: 89 ALDLIQNEQVSAIIGPIDSMQAKFMIKLANKTQVPTISFSA--TSPLLTSIKSDYFVRGT 146
Query: 149 SNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLP 208
+DS Q+K IA + + WR V AIY DN G G + L +ALQ+V R V+P
Sbjct: 147 IDDSYQVKAIAAIFESFGWRSVVAIYVDNELG--EGIMPYLFDALQDVQVD----RSVIP 200
Query: 209 PISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268
S +D + + EL K+ +Q+RVF+V AS + +F +A +G++ + VW++TN
Sbjct: 201 --SEAND--DQILKELYKLMTRQTRVFVVHMASR-LASRIFEKATEIGMMEEGYVWLMTN 255
Query: 269 TVANALDSLNT-TVISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEYPE-EDHFHPS 326
+ + + ++ +++++G LG++ ++F ++RNF E P D S
Sbjct: 256 GMTHMMRHIHHGRSLNTIDGVLGVRSHVPKSKG-LEDFRLRWKRNFKKENPWLRDDL--S 312
Query: 327 IHALRAHDSIKIITEAIGRLN-----YNI---SSPEM--------------LLRQMLSSD 364
I L A+DS + A+ + N YN SS M LL +
Sbjct: 313 IFGLWAYDSTTALAMAVEKTNISSFPYNNASGSSNNMTDLGTLHVSRYGPSLLEALSEIR 372
Query: 365 FSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIA 424
F+GL+G+ D +L + I+N VG + + + FW P+ G +S +++
Sbjct: 373 FNGLAGRFNLIDRQL-ESPKFEIINFVGNEERIVGFWTPSNGLVNVNSNK-----TTSFT 426
Query: 425 AEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKN 484
E F GP+IWPG PKGW +P+N + +++GVP + F FV + DP+ + K
Sbjct: 427 GERF-GPLIWPGKS-TIVPKGWEIPTNGKKIKVGVPVKKGFFNFVEVITDPITNITTPK- 483
Query: 485 LRYDGFSIELFRLVVDHLNYD-LP--YEFVPHDGVYDDLI----NGVYDKV 528
G++I++F + L Y +P Y F D YDDL+ NG D V
Sbjct: 484 ----GYAIDIFEAALKKLPYSVIPQYYRFESPDDDYDDLVYKVDNGTLDAV 530
|
|
| TAIR|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 1.7e-51, P = 1.7e-51
Identities = 168/549 (30%), Positives = 268/549 (48%)
Query: 1 MNRFFFLVL-IIASELVFVSPGVESAS--TNVNIEEVTKIGAIVDANSQMGKQAITAMKI 57
M R LVL ++ +VF+ E+ + TNVN+ V IG A S M + + +
Sbjct: 1 MKRENNLVLSLLFFVIVFLMQVGEAQNRITNVNVGIVNDIGT---AYSNM---TLLCINM 54
Query: 58 AVQNFNSD--SRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115
++ +F S +L + D D AA AA +LI ++VK I G T + + E
Sbjct: 55 SLSDFYSSHPETQTRLVTTVVDSKNDVVTAAAAALDLITNKEVKAILGPWTSMQAQFMIE 114
Query: 116 IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYE 175
+ + QVPI++++A +P S R Y R +DS Q+ I ++ + + WR VA +Y
Sbjct: 115 MGQKSQVPIVTYSA--TSPSLASIRSQYFFRATYDDSSQVHAIKEIIKLFGWREVAPVYV 172
Query: 176 DNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235
D+ +G G + L + LQ ++ I R V+ P + +D + +V EL ++ +RVF
Sbjct: 173 DDTFG--EGIMPRLTDVLQEINV-RIPYRTVISP--NATDDEISV--ELLRMMTLPTRVF 225
Query: 236 IVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKXXX 295
+V L + F +A +GL+ + VWI+TNT+ + L +N T I +M+G LG+K
Sbjct: 226 VVHLVEL-LASRFFAKATEIGLMKQGYVWILTNTITDVLSIMNETEIETMQGVLGVKTYV 284
Query: 296 XXXXXPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY------- 348
KE FR +T +P D + A A ++ + E G N
Sbjct: 285 PRS----KELEN-FRSRWTKRFPISDLNVYGLWAYDATTALALAIEEAGTSNLTFVKMDA 339
Query: 349 --NISSPEML--------LRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKE 397
N+S + L L Q LS F GL+G +F +GEL IVNV G+ +
Sbjct: 340 KRNVSELQGLGVSQYGPKLLQTLSRVRFQGLAGDFQFINGEL-QPSVFEIVNVNGQGGRT 398
Query: 398 LDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRI 457
+ FW+ +G K + + + + P+IWPG+ + PKGW +P+N + ++I
Sbjct: 399 IGFWMKEYGLFKNVDQKPASKTTFSSWQDRLR-PIIWPGDTTSV-PKGWEIPTNGKRLQI 456
Query: 458 GVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVP-HDGV 516
GVP F++FV DP+ NS + GFSI+ F V+ + YD+ Y+F+P DG
Sbjct: 457 GVPVNNTFQQFVKATRDPIT-NSTI----FSGFSIDYFEAVIQAIPYDISYDFIPFQDGG 511
Query: 517 YDDLINGVY 525
YD L+ VY
Sbjct: 512 YDALVYQVY 520
|
|
| TAIR|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 161/554 (29%), Positives = 263/554 (47%)
Query: 3 RFFFLVLIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNF 62
+ FF +L++ + + G + T V++ G + D ++ K + + +++ +F
Sbjct: 5 KLFFCILLVFFFCLEFNRGQNNGKTLVDV------GVVTDVDTSHSKVVMLCINMSISDF 58
Query: 63 NSDSRNH--KLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRV 120
S + +L + + D D AA AA +LI ++VK I G T + + EI +
Sbjct: 59 YSSNPQFETRLVVNVGDSKSDVVGAAIAALDLIKNKQVKAILGPWTSMQAHFLIEIGQKS 118
Query: 121 QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
+VPI+S++A +P+ S R PY +R DS Q++ I + + + WR V +Y DN +G
Sbjct: 119 RVPIVSYSA--TSPILTSLRSPYFLRATYEDSFQVQPIKAIIKLFGWREVVPVYIDNTFG 176
Query: 181 GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA 240
G + L +ALQ+++ I R V+ +I+ + EL K+ + +RVF+V
Sbjct: 177 --EGIMPRLTDALQDINV-RIPYRSVI----AINATDHEISVELLKMMNMPTRVFLV-HM 228
Query: 241 SLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKXXXXXXXX 300
D+ F +A +GL+ VWI+TN V + L +N T + +MEG LGIK
Sbjct: 229 YYDLASRFFIKAKELGLMEPGYVWILTNGVIDDLSLINETAVEAMEGVLGIKTYI----- 283
Query: 301 PYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI---GRLNY--------- 348
P FR + S +P + S++ L A+D+ + AI G N
Sbjct: 284 PKSPDLEKFRSRWRSLFPRVEL---SVYGLWAYDATTALAVAIEEAGTNNMTFSKVVDTG 340
Query: 349 -NISSPEML---------LRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKEL 398
N+S E L L+ +L+ F GL+G+ RF G+L IVN++ K +
Sbjct: 341 RNVSELEALGLSQFGPKLLQTLLTVQFRGLAGEFRFFRGQL-QPSVFEIVNIINTGEKSI 399
Query: 399 DFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIG 458
FW G K + IS+ + ++WPG + PKGW +P+ + +RIG
Sbjct: 400 GFWKEGNGLVKKLDQQ-ASSISALSTWKDHLKHIVWPGEA-DSVPKGWQIPTKGKKLRIG 457
Query: 459 VPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHD---- 514
VP RT + V + DP+ NS GF I+ F V+ L YD+ YEF+P +
Sbjct: 458 VPKRTGYTDLVKVTRDPIT-NSTVVT----GFCIDFFEAVIRELPYDVSYEFIPFEKPDG 512
Query: 515 ---GVYDDLINGVY 525
G Y+DL+ VY
Sbjct: 513 KTAGNYNDLVYQVY 526
|
|
| TAIR|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 1.0e-48, P = 1.0e-48
Identities = 164/549 (29%), Positives = 264/549 (48%)
Query: 3 RFFFLVLIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNF 62
RF FL E S G ++ T VNI G + D + A+ + +++ +F
Sbjct: 9 RFLFLFFFFCLES---SRGQDNGKTQVNI------GVVSDVGTSYPDVAMLCINMSLADF 59
Query: 63 NSDSRNH--KLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRV 120
S +L + + D D AATAA +LI ++VK I G T + + EI +
Sbjct: 60 YSSRPQFQTRLVVNVGDSKNDVVGAATAAIDLIKNKQVKAILGPWTSMQAHFLIEIGQKS 119
Query: 121 QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
+VP++S++A +P S R PY R DS Q+ I + + + WR V +Y DN +G
Sbjct: 120 RVPVVSYSA--TSPSLTSLRSPYFFRATYEDSSQVHAIKAIIKLFGWREVVPVYIDNTFG 177
Query: 181 GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV-LQ 239
G + L ++LQ+++ I R V+P ++ D + EL K+ + +RVFIV +
Sbjct: 178 --EGIMPRLTDSLQDINV-RIPYRSVIPLNATDQD----ISVELLKMMNMPTRVFIVHMS 230
Query: 240 ASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKXXXXXXX 299
+SL T+ F +A +GL+ VWI+TN V + L S+N T I +MEG LGIK
Sbjct: 231 SSLASTV--FIKAKELGLMKPGYVWILTNGVMDGLRSINETGIEAMEGVLGIKTYIPKSK 288
Query: 300 XPYKEFSALFRRNFT----SEYPEEDHFHPSIHALRAHDS-IKIITEAIGRLNYNISSPE 354
+ F + ++R F + Y + + A+ D+ I +T + N+S +
Sbjct: 289 D-LETFRSRWKRRFPQMELNVYGLWAYDATTALAMAIEDAGINNMTFSNVDTGKNVSELD 347
Query: 355 ML--------LRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNF 405
L L Q +S+ F GL+G F G+L IVN++G + + FW
Sbjct: 348 GLGLSQFGPKLLQTVSTVQFKGLAGDFHFVSGQL-QPSVFEIVNMIGTGERSIGFWTEGN 406
Query: 406 GFSKTSSKH--NVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRT 463
G K + ++G +S+ +IWPG ++ PKGW +P+N + +RIGVP R
Sbjct: 407 GLVKKLDQEPRSIGTLST---WPDHLKHIIWPGEAVSV-PKGWEIPTNGKKLRIGVPKRI 462
Query: 464 FFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHD-------GV 516
F V + DP+ ++ K GF I+ F V+ + YD+ YEF P + G
Sbjct: 463 GFTDLVKVTRDPITNSTVVK-----GFCIDFFEAVIQAMPYDVSYEFFPFEKPNGEPAGN 517
Query: 517 YDDLINGVY 525
++DL++ VY
Sbjct: 518 HNDLVHQVY 526
|
|
| TAIR|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.3e-41, P = 1.3e-41
Identities = 155/555 (27%), Positives = 268/555 (48%)
Query: 3 RFFFLVLIIASELVFVSPGVESASTNVNIE-EVTKIGAIVDANSQMGKQAITAMKIAVQN 61
++F L+LII + + P ++ + V+ +V IG++ NS +GK AM AV++
Sbjct: 2 KWFLLMLIICNAV----P-LQGLTKIVSARPQVVNIGSVFTFNSLIGKVIKVAMDAAVED 56
Query: 62 FN-SDSRNHKLSLQIRDHNR--DPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIAS 118
N S S + +L+I H+ + F + + + E V +I G + VVA +A+
Sbjct: 57 VNASPSILNTTTLRIIMHDTKYNGFMSIMEPLQFMESETVAII-GPQRSTTARVVAHVAT 115
Query: 119 RVQVPILSFAA--PAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED 176
+++PILSF+A P ++PL ++P+ IR + ND QM IAD+ + Y WR V AIY D
Sbjct: 116 ELKIPILSFSATDPTMSPL----QFPFFIRTSQNDLFQMAAIADIVQFYGWREVVAIYGD 171
Query: 177 NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236
+ YG + +A L + L I + LPP + +E + L KV +SR+ I
Sbjct: 172 DDYGRNG--VAALGDRLSE-KRCRISYKAALPPAPT----RENITDLLIKVALSESRI-I 223
Query: 237 VLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKXXXX 296
V+ AS + LF A +G++ VWI TN ++ +D+ + + ++ G+
Sbjct: 224 VVHASFIWGLELFNVARNLGMMSTGYVWIATNWLSTIIDTDSPLPLDTINNIQGV--ITL 281
Query: 297 XXXXPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI-------GRLNYN 349
P +++ ++NF + H S +AL A+D++ ++ +AI G ++++
Sbjct: 282 RLHTP----NSIMKQNFVQRWHNLTHVGLSTYALYAYDTVWLLAQAIDDFFKKGGNVSFS 337
Query: 350 ----ISS----------------PEMLLRQMLSSDFSGLSGKIRF-KDGELLNADTLRIV 388
IS ++ L +L D GL+G+++F D L+N ++
Sbjct: 338 KNPIISELGGGNLHLDALKVFDGGKIFLESILQVDRIGLTGRMKFTSDRNLVNP-AFDVL 396
Query: 389 NVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFT-GPVIWPGNLINRNPKGWA 447
NV+G Y + +W + G S + D N + G V+WPG+ I + P+GW
Sbjct: 397 NVIGTGYTTIGYWFNHSGLSVMPA-----DEMENTSFSGQKLHSVVWPGHSI-KIPRGWV 450
Query: 448 MPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLP 507
+N +RIGVP R FE+ V +K NG GF +++F ++ L Y +P
Sbjct: 451 FSNNGRHLRIGVPNRYRFEEVVSVKS---NG-------MITGFCVDVFIAAINLLPYAVP 500
Query: 508 YEFVPHDGVYDDLIN 522
+E V +D+ N
Sbjct: 501 FELVAFGNGHDNPSN 515
|
|
| TAIR|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 4.8e-40, Sum P(2) = 4.8e-40
Identities = 108/395 (27%), Positives = 178/395 (45%)
Query: 6 FLVLIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSD 65
F VL++ S +V + G+ S + V +GAI + G+ AMK A ++ NSD
Sbjct: 2 FWVLVLLSFIVLIGDGMISEGAGLRPRYVD-VGAIFSLGTLQGEVTNIAMKAAEEDVNSD 60
Query: 66 SR---NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQV 122
KL + D R+ F A + + + V +I G +T V++ +A+ + V
Sbjct: 61 PSFLGGSKLRITTYDAKRNGFLTIMGALQFMETDAVAII-GPQTSIMAHVLSHLANELSV 119
Query: 123 PILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182
P+LSF A + P + ++P+ ++ A +D M+ IA++ Y W V A+Y D+
Sbjct: 120 PMLSFTA--LDPSLSALQFPFFVQTAPSDLFLMRAIAEMISYYGWSEVIALYNDD--DNS 175
Query: 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL 242
+ L + L+ +I + VLP I+ P+E + EL K+Q +SRV IV +
Sbjct: 176 RNGITALGDELEG-RRCKISYKAVLPLDVVITSPREIIN-ELVKIQGMESRVIIV--NTF 231
Query: 243 DMT-IHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKXXXXXXXXP 301
T +F EA ++G++ K VWI T + + LDS+N + E G+
Sbjct: 232 PKTGKKIFEEAQKLGMMEKGYVWIATTWLTSLLDSVNPLPAKTAESLRGVLTLRIHTPNS 291
Query: 302 YKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL---NYNIS-SPEMLL 357
K+ + R N S +++ L A+D++ II A+ RL NIS S + L
Sbjct: 292 KKKKDFVARWNKLSN----GTVGLNVYGLYAYDTVWIIARAVKRLLDSRANISFSSDPKL 347
Query: 358 RQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG 392
M L F G D + N+ G
Sbjct: 348 TSMKGGGSLNLGALSIFDQGSQF-LDYIVNTNMTG 381
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| TAIR|locus:2062586 GLR5 "glutamate receptor 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 1.4e-37, P = 1.4e-37
Identities = 138/526 (26%), Positives = 248/526 (47%)
Query: 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAA 89
++ IGA+ +S +G+ A A++ AV + N+D + +L L + D + F+ + A
Sbjct: 29 QLVNIGAVFAFDSVIGRAAKVALEAAVSDVNNDKSFLKETELRLLMEDSACNVFRGSFGA 88
Query: 90 QELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMAS 149
EL+ KE V +I + + +++IA + P++SFAA P + ++P+ +R
Sbjct: 89 FELLEKEVVAMIGPISS-SVAHTISDIAKGLHFPLVSFAA--TDPTLSALQFPFFLRTTP 145
Query: 150 NDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPP 209
ND+ QM + DL Y W+ V ++Y D+ G + G AL E + S I ++ P
Sbjct: 146 NDAHQMSALVDLINFYGWKEVISVYSDDELGRN-GVSALDDELYKK--RSRISYKV---P 199
Query: 210 ISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269
+S SD K + L K + RV+I L D + +F A ++ ++ + VW+ T+
Sbjct: 200 LSVHSDEK-FLTNALNKSKSIGPRVYI-LHFGPDPLLRIFDIAQKLQMMTHEYVWLATDW 257
Query: 270 VANALDSLNTT-VISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEYPEEDHFHPSIH 328
++ LDSL+ + +EG +G++ + F+ + N S H + ++
Sbjct: 258 LSVTLDSLSDKGTLKRLEGVVGLRQHIPESVK-MEHFTHKLQSN-RSMNAYALHAYDTVW 315
Query: 329 ALRAHDSIKIITEAIG-RLNYN------------------ISSPEMLLRQMLSSDFSGLS 369
+ AH +++ E I +Y+ +S E+LL ++L +F+G++
Sbjct: 316 MI-AHGIEELLNEGINITFSYSEKLLHARGTKLHLEKIKFFNSGELLLEKLLKVNFTGIA 374
Query: 370 GKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFT 429
G+++F G + I+NV + FW N GFS + K ++ ++
Sbjct: 375 GQVQFGSGRNVIGCDYEIINVNKTDVHTVGFWSKNGGFSVVAPKTRHSQKKTSFVSDEKL 434
Query: 430 GPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDG 489
G + WPG P+GW + + +P++I VP R F +FV + NS+ R G
Sbjct: 435 GDITWPGGG-REKPRGWVIADSADPLKIVVPRRVSFVEFVTEEK-----NSSH---RIQG 485
Query: 490 FSIELFRLVVDHLNYDLPYEFVP----HDGV-YDDLI----NGVYD 526
F I++F + + Y +PY F P H Y+ LI +GVYD
Sbjct: 486 FCIDVFIEALKFVPYSVPYIFEPFGNGHSSPNYNHLIQMVTDGVYD 531
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| TAIR|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 135/527 (25%), Positives = 250/527 (47%)
Query: 37 IGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELI 93
+GA+ +S +G+ A A+K A+ + N+D + KL++ +D N F A +L+
Sbjct: 63 VGALFTYDSFIGRAAKPAVKAAMDDVNADQSVLKGIKLNIIFQDSNCSGFIGTMGALQLM 122
Query: 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSE 153
+ V I G ++ +++ +A+ + VP+LSF A P S ++PY +R ND
Sbjct: 123 ENKVVAAI-GPQSSGIAHMISYVANELHVPLLSFGA--TDPTLSSLQFPYFLRTTQNDYF 179
Query: 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSI 213
QM IAD WR+V AI+ D+ G + +++L + L S I + + P +
Sbjct: 180 QMHAIADFLSYSGWRQVIAIFVDDECGRNG--ISVLGDVLAK-KRSRISYKAAITPGADS 236
Query: 214 SDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANA 273
S ++R L V +SRVF+V + D +++F+ A +G++ VWI T+ + A
Sbjct: 237 S----SIRDLLVSVNLMESRVFVV-HVNPDSGLNVFSVAKSLGMMASGYVWIATDWLPTA 291
Query: 274 LDSL---NTTVISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEYPEEDHFHPSIHAL 330
+DS+ ++ + ++G + + ++F A ++ N P D F+ +A+
Sbjct: 292 MDSMEHVDSDTMDLLQGVVAFRHYTIESSVK-RQFMARWK-NLR---PN-DGFNS--YAM 343
Query: 331 RAHDSIKIITEAIG---RLNYNIS---SP---------------------EMLLRQMLSS 363
A+DS+ ++ A+ R N NI+ P E ++ +L
Sbjct: 344 YAYDSVWLVARALDVFFRENNNITFSNDPNLHKTNGSTIQLSALSVFNEGEKFMKIILGM 403
Query: 364 DFSGLSGKIRF-KDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSN 422
+ +G++G I+F D +N ++N+ G + + +W + G S + +
Sbjct: 404 NHTGVTGPIQFDSDRNRVNP-AYEVLNLEGTAPRTVGYWSNHSGLSVVHPETLYSRPPNT 462
Query: 423 IAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSND 482
A +I+PG + + P+GW P+N +P+RIGVP R + +V KD N
Sbjct: 463 STANQRLKGIIYPGE-VTKPPRGWVFPNNGKPLRIGVPNRVSYTDYVS-KD------KNP 514
Query: 483 KNLRYDGFSIELFRLVVDHLNYDLPYEFVPH-DGV----YDDLINGV 524
+R G+ I++F ++ L Y +P ++ + DG YD+L+N V
Sbjct: 515 PGVR--GYCIDVFEAAIELLPYPVPRTYILYGDGKRNPSYDNLVNEV 559
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_LG_IV000445 | glutamate-gated kainate-type ion channel receptor subunit GluR5 (942 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 550 | |||
| cd06366 | 350 | cd06366, PBP1_GABAb_receptor, Ligand-binding domai | 7e-97 | |
| cd06350 | 348 | cd06350, PBP1_GPCR_family_C_like, Ligand-binding d | 6e-43 | |
| pfam01094 | 343 | pfam01094, ANF_receptor, Receptor family ligand bi | 5e-42 | |
| cd06269 | 298 | cd06269, PBP1_glutamate_receptors_like, Family C G | 4e-37 | |
| cd04509 | 299 | cd04509, PBP1_ABC_transporter_GCPR_C_like, Family | 6e-35 | |
| cd06268 | 298 | cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas | 2e-24 | |
| pfam13458 | 343 | pfam13458, Peripla_BP_6, Periplasmic binding prote | 1e-22 | |
| COG0683 | 366 | COG0683, LivK, ABC-type branched-chain amino acid | 2e-19 | |
| cd01391 | 269 | cd01391, Periplasmic_Binding_Protein_Type_1, Type | 1e-18 | |
| cd06351 | 328 | cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci | 2e-18 | |
| cd06333 | 312 | cd06333, PBP1_ABC-type_HAAT_like, Type I periplasm | 1e-16 | |
| cd06352 | 389 | cd06352, PBP1_NPR_GC_like, Ligand-binding domain o | 5e-13 | |
| cd06367 | 362 | cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isole | 6e-13 | |
| cd06345 | 344 | cd06345, PBP1_ABC_ligand_binding_like_10, Type I p | 9e-13 | |
| cd06363 | 410 | cd06363, PBP1_Taste_receptor, Ligand-binding domai | 8e-11 | |
| cd06330 | 346 | cd06330, PBP1_Arsenic_SBP_like, Periplasmic solute | 7e-10 | |
| cd06340 | 347 | cd06340, PBP1_ABC_ligand_binding_like_6, Type I pe | 7e-09 | |
| cd06346 | 312 | cd06346, PBP1_ABC_ligand_binding_like_11, Type I p | 7e-09 | |
| cd06342 | 334 | cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic l | 1e-08 | |
| cd06347 | 334 | cd06347, PBP1_ABC_ligand_binding_like_12, Type I p | 5e-08 | |
| cd06368 | 324 | cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc | 7e-08 | |
| cd06327 | 334 | cd06327, PBP1_SBP_like_1, Periplasmic solute-bindi | 9e-08 | |
| cd06338 | 345 | cd06338, PBP1_ABC_ligand_binding_like_5, Type I pe | 1e-07 | |
| cd06348 | 344 | cd06348, PBP1_ABC_ligand_binding_like_13, Type I p | 4e-07 | |
| cd06332 | 333 | cd06332, PBP1_aromatic_compounds_like, Type I peri | 6e-07 | |
| cd06335 | 347 | cd06335, PBP1_ABC_ligand_binding_like_2, Type I pe | 7e-07 | |
| cd06374 | 472 | cd06374, PBP1_mGluR_groupI, Ligand binding domain | 3e-06 | |
| cd06361 | 403 | cd06361, PBP1_GPC6A_like, Ligand-binding domain of | 5e-06 | |
| cd06326 | 336 | cd06326, PBP1_STKc_like, Type I periplasmic bindin | 9e-06 | |
| cd06339 | 336 | cd06339, PBP1_YraM_LppC_lipoprotein_like, Periplas | 3e-05 | |
| cd06337 | 357 | cd06337, PBP1_ABC_ligand_binding_like_4, Type I pe | 3e-05 | |
| cd06376 | 463 | cd06376, PBP1_mGluR_groupIII, Ligand-binding domai | 3e-05 | |
| cd06375 | 458 | cd06375, PBP1_mGluR_groupII, Ligand binding domain | 5e-05 | |
| cd06336 | 347 | cd06336, PBP1_ABC_ligand_binding_like_3, Type I pe | 6e-05 | |
| cd06373 | 396 | cd06373, PBP1_NPR_like, Ligand binding domain of n | 9e-05 | |
| cd06362 | 452 | cd06362, PBP1_mGluR, Ligand binding domain of the | 1e-04 | |
| cd06328 | 333 | cd06328, PBP1_SBP_like_2, Periplasmic solute-bindi | 6e-04 | |
| cd06379 | 377 | cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/i | 0.001 | |
| cd06382 | 327 | cd06382, PBP1_iGluR_Kainate, N-terminal leucine/is | 0.002 | |
| cd06378 | 362 | cd06378, PBP1_iGluR_NMDA_NR2, N-terminal leucine/i | 0.002 | |
| smart00918 | 62 | smart00918, Lig_chan-Glu_bd, Ligated ion channel L | 0.002 | |
| cd06381 | 363 | cd06381, PBP1_iGluR_delta_like, N-terminal leucine | 0.003 | |
| cd06342 | 334 | cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic l | 0.004 |
| >gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = 7e-97
Identities = 134/382 (35%), Positives = 214/382 (56%), Gaps = 42/382 (10%)
Query: 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNH---KLSLQIRDHNRDPFQAATAAQE 91
+IGAI D + S +GK A+ A+++A+++ N+D+ +L L +RD DP QAA+AA +
Sbjct: 1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALD 60
Query: 92 LINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151
L+ + V I G + VAE+A+ VP+LSFAA + + LS ++PY R +D
Sbjct: 61 LLENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPS-LSSRLQYPYFFRTTPSD 119
Query: 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS 211
S Q IA L +K+ WRRVA IYED+ YG SG L L +ALQ EI R PP +
Sbjct: 120 SSQNPAIAALLKKFGWRRVATIYEDDDYG--SGGLPDLVDALQEA-GIEISYRAAFPPSA 176
Query: 212 SISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271
+ D + LKK+++K SRV +V S D+ +F EA ++G++GK VWI+T+ ++
Sbjct: 177 NDDDITD----ALKKLKEKDSRVIVVH-FSPDLARRVFCEAYKLGMMGKGYVWILTDWLS 231
Query: 272 NALDS----LNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSI 327
+ S + ++ +M+G +G++SY + S +EF++ +R+ F +E PE PSI
Sbjct: 232 SNWWSSSDCTDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPELT--EPSI 289
Query: 328 HALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRI 387
+AL A+D++ S++F+GLSG ++F G L + I
Sbjct: 290 YALYAYDAV-----------------------WASTNFNGLSGPVQFDGGRRLASPAFEI 326
Query: 388 VNVVGKKYKELDFWLPNFGFSK 409
+N++GK Y+++ FW G S
Sbjct: 327 INIIGKGYRKIGFWSSESGLSV 348
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Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350 |
| >gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 6e-43
Identities = 77/304 (25%), Positives = 122/304 (40%), Gaps = 42/304 (13%)
Query: 37 IGAIVDANSQM-------------GKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNR 80
IG + +S G QA AM AV+ N+D N L I D
Sbjct: 2 IGGLFPLHSGSESVSLKCGRFGKKGLQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCC 61
Query: 81 DPFQAATAAQELINK-------------EKVKVIAGMETWEETAVVAEIASRVQVPILSF 127
P A AA +L+ KV + G + + VAE+ ++P +S+
Sbjct: 62 SPAVALRAALDLLLSGEGTTPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQISY 121
Query: 128 AAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187
A + LS ++P R +D+ Q I L + + W V +Y D+ YG L+
Sbjct: 122 GATSPL-LSDKLQFPSFFRTVPSDTSQALAIVALLKHFGWTWVGLVYSDDDYG--RSGLS 178
Query: 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIH 247
L E L+ + I +PP S +E ++ LKK++ +RV +V D +
Sbjct: 179 DLEEELEK-NGICIAFVEAIPP----SSTEEDIKRILKKLKSSTARVIVVF-GDEDDALR 232
Query: 248 LFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSA 307
LF EA ++G+ GK I T+ + L T + + +G LG + S F
Sbjct: 233 LFCEAYKLGMTGK-YWIISTDWDTSTCLLLFT--LDAFQGVLGFSGHAP-RSGEIPGFKD 288
Query: 308 LFRR 311
R+
Sbjct: 289 FLRK 292
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Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further devided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins. Length = 348 |
| >gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 5e-42
Identities = 94/351 (26%), Positives = 163/351 (46%), Gaps = 23/351 (6%)
Query: 53 TAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109
AM++A+++ N+D L + D D F A AA L+ + V + G
Sbjct: 4 LAMRLAIEDINADGGLLPGITLGYEDDDTCDDSF-AVAAAACLLKSKGVVAVIGPSCSSV 62
Query: 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRR 169
VA +A +P++S+ A + LS R+P R +DS+Q + IAD+ + + W+R
Sbjct: 63 AIAVARLAGAFGIPMISYGATSPE-LSDKTRYPTFARTVPSDSKQARAIADILKHFGWKR 121
Query: 170 VAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD 229
VA IY+D+ YG G L L +AL+ + + I+S D ++ ELK ++
Sbjct: 122 VAVIYDDDDYG--EGGLEALEDALREAGLNVVAV--ASEVIASDDDFTALLK-ELKDIKS 176
Query: 230 KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTL 289
K +RV +V S D + +A +GL+ VWI+T+ +++LD N + +G L
Sbjct: 177 K-ARVIVVC-GSSDDLRQILRQARELGLMSGGYVWILTDLWSDSLDIDNDKAREAAKGVL 234
Query: 290 GIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI------ 343
G DS ++EF ++ P D P+ +AL A+D++ ++ A+
Sbjct: 235 GFT-LKPPDSPGFQEFVERLKKLANRCTPALDT-EPNGYALLAYDAVYLLAHALNEALRD 292
Query: 344 --GRLNYNISSPEMLLRQMLSSDFSGLSGKIRF-KDGELLNADTLRIVNVV 391
LL + + +F GL+G ++F +G +L I+N
Sbjct: 293 DPNITRGLWVDGSQLLEYLRNVNFEGLTGPVQFDDNGGRRPDYSLEILNWD 343
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This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Length = 343 |
| >gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 4e-37
Identities = 69/285 (24%), Positives = 118/285 (41%), Gaps = 31/285 (10%)
Query: 36 KIGAIVDANS-----QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQ 90
+IG + +S + G A AV+ N+D N L +I D P A +AA
Sbjct: 1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINNDLPNTTLGYEIYDSCCSPSDAFSAAL 60
Query: 91 ELINK----EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR 146
+L + V + G + VA + + +P +S++A + LS ++P +R
Sbjct: 61 DLCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSATSPL-LSDKEQFPSFLR 119
Query: 147 MASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLV 206
+DS Q + I DL + + W V +Y D+ YG L LL E L+
Sbjct: 120 TVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYG--RRLLELLEEELEKNGICVAF---- 173
Query: 207 LPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266
+ SI D E +R LK+++ +RV +V +S + + L EA +G++ WI+
Sbjct: 174 ---VESIPDGSEDIRRLLKELKSSTARVIVVF-SSEEDALRLLEEAVELGMMT-GYHWII 228
Query: 267 TNTVANALDSLNTTVISSMEGTLGIKSY--------YSDDSSPYK 303
T+ L+ ++ G L Y+ + Y
Sbjct: 229 TDLW--LTSCLDLELLEYFPGNLTGFGEAALVYDAVYAGRRANYD 271
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This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G). Length = 298 |
| >gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 6e-35
Identities = 72/306 (23%), Positives = 126/306 (41%), Gaps = 23/306 (7%)
Query: 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQ 90
KIG + + ++ G + ++AV+ N+ KL L I D DP +A AA+
Sbjct: 1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAAR 60
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
L +E V + G + VA +A +++P++S A A L+ + +PYL R +
Sbjct: 61 RLCQQEGVDALVGPVSSGVALAVAPVAEALKIPLISPGATA-PGLTDKKGYPYLFRTGPS 119
Query: 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPI 210
D +Q + +AD ++YNW++VA +Y+D+ YG L A + + +
Sbjct: 120 DEQQAEALADYIKEYNWKKVAILYDDDSYGRGL--LEAFKAAFKKKGGTVVG-------E 170
Query: 211 SSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270
L+K++ + V IVL S + + +A GL +
Sbjct: 171 EYYPLGTTDFTSLLQKLKAAKPDV-IVLCGSGEDAATILKQAAEAGLT-GGYPILGITLG 228
Query: 271 ANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHAL 330
+ + + EG L Y+ D P F F R E + + AL
Sbjct: 229 LSDVLL--EAGGEAAEGVLTGTPYFPGDPPPESFF---FVRAAAREKKKYEDQPDYFAAL 283
Query: 331 RAHDSI 336
A+D++
Sbjct: 284 -AYDAV 288
|
This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4- isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine-binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus - which is included in this CD - followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type II periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 299 |
| >gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 72/313 (23%), Positives = 124/313 (39%), Gaps = 36/313 (11%)
Query: 36 KIGAIVD---ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQ 90
KIG ++ + +G+ ++AV+ N+ K+ L + D DP AA AA+
Sbjct: 1 KIGVLLPLSGPLAALGEPVRNGAELAVEEINAAGGILGRKIELVVEDTQGDPEAAAAAAR 60
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
EL++ + V + G + A +A VP++S A + P + PY+ R A +
Sbjct: 61 ELVD-DGVDAVIGPLSSGVALAAAPVAEEAGVPLISPGATS--PALTGKGNPYVFRTAPS 117
Query: 151 DSEQMKCIAD-LARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNV---SSSEIQSRLV 206
D++Q +AD LA K ++VA IY+D YG LA A + E+ +
Sbjct: 118 DAQQAAALADYLAEKGKVKKVAIIYDDYAYGRG------LAAAFREALKKLGGEVVAEET 171
Query: 207 LPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266
PP +D + K++ + L +A GL +
Sbjct: 172 YPP--GATDFSPLIA----KLKAAGP-DAVFLAGYGGDAALFLKQAREAGL---KVPIVG 221
Query: 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPS 326
+ A +L + EG LG Y DD P F + + P
Sbjct: 222 GDGAAA--PALLELAGDAAEGVLGTTPYAPDDDDPAAAAF------FQKAFKAKYGRPPD 273
Query: 327 IHALRAHDSIKII 339
+A A+D+++++
Sbjct: 274 SYAAAAYDAVRLL 286
|
Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 298 |
| >gnl|CDD|222144 pfam13458, Peripla_BP_6, Periplasmic binding protein | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 72/350 (20%), Positives = 135/350 (38%), Gaps = 41/350 (11%)
Query: 36 KIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSRNH--KLSLQIRDHNRDPFQAATAAQ 90
KIG + + G+ + ++A++ N+ K+ L + D DP +AA AA+
Sbjct: 3 KIGVLTPLSGPYAASGRSSRAGARLAIEEINAAGGVLGRKIELVVADDQSDPDRAAAAAR 62
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
L++++ V I G T VA + + VP++ +A S P + +
Sbjct: 63 RLVDQDGVDAIFGGLTSAVALAVAPVLEKKGVPLIGPSALEGEECS-----PNVFYTGAT 117
Query: 151 DSEQMKCIAD-LARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPP 209
++Q + D LA++ ++VA I D +G + A AL+ + P
Sbjct: 118 PNQQAAALVDYLAKELGGKKVALIGSDYAFGREL--NAAARAALKAAGGEVVGEVYY--P 173
Query: 210 ISSISDPKEAVRGELKKVQDKQSRV-FIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268
+ + +D V Q K S ++L + A GL K + +V+
Sbjct: 174 LGT-TDFSSVVL------QIKASGPDVVLLTLVGADAVAFIKAAREAGLDPKG-IPLVSL 225
Query: 269 TVANALDSLNTTVISSMEGTLGIKSYYSDDSSP-YKEFSALFRRNFTSEYPEEDHFHPSI 327
+ A L + EG Y+ D +P + F A ++ + + P P+
Sbjct: 226 SGYEA--DLLALGGEAAEGVYTAAPYFPDLDTPANRAFVAAYKARYGEDAP------PTQ 277
Query: 328 HALRAHDSIKIITEAI---GRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
A A+ + ++ A+ G L+ E + + F G G + F
Sbjct: 278 FAAAAYAAADLLAAALEAAGSLD-----REAVRAALRGLKFDGPFGPVGF 322
|
This family includes a diverse range of periplasmic binding proteins. Length = 343 |
| >gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 72/370 (19%), Positives = 131/370 (35%), Gaps = 28/370 (7%)
Query: 32 EEVTKIGAIVD---ANSQMGKQAITAMKIAVQ--NFNSDSRNHKLSLQIRDHNRDPFQAA 86
+ KIG ++ + G+Q ++AV+ N K+ L + D DP AA
Sbjct: 8 ADTIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGGILGRKVELVVEDDASDPATAA 67
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR 146
A++LI ++ V + G T + +A VP++S +A A P + R
Sbjct: 68 AVARKLITQDGVDAVVGPTTSGVALAASPVAEEAGVPLISPSATAPQLTGR-GLKPNVFR 126
Query: 147 MASNDSEQMKCIAD-LARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRL 205
D++Q AD L +K +RVA I +D YG LA+A + +
Sbjct: 127 TGPTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGEG------LADAFKA---ALKALGG 177
Query: 206 VLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265
+ + + K++ +V D + +A GL K +
Sbjct: 178 EVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGGYGPDAAL-FLRQAREQGLKAKL-IGG 235
Query: 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHP 325
A + + DDS K+F ++ + P
Sbjct: 236 DGAGTAEFEEIAGAGGAGAGLLATAY--STPDDSPANKKFVEAYKAKYGDPAA------P 287
Query: 326 SIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQM-LSSDFSGLSGKIRFKDGELLNADT 384
S A A+D++K++ +AI + + S E + + F G + F + +
Sbjct: 288 SYFAAAAYDAVKLLAKAIEKAGKS-SDREAVAEALKGGKFFDTAGGPVTFDEKGDRGSKP 346
Query: 385 LRIVNVVGKK 394
+ + V
Sbjct: 347 VYVGQVQKGG 356
|
Length = 366 |
| >gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 1e-18
Identities = 54/275 (19%), Positives = 102/275 (37%), Gaps = 24/275 (8%)
Query: 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELI 93
KIG ++ + + G Q + +++A + L + + D DP +A A ++LI
Sbjct: 1 KIGVLLPLSGSAPFGAQLLAGIELAAEE-----IGRGLEVILADSQSDPERALEALRDLI 55
Query: 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSE 153
+ V I G + V E+A+ +P++S A A +PY+ R+ ++ +
Sbjct: 56 QQ-GVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATA----PDLTGYPYVFRVGPDNEQ 110
Query: 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSI 213
+ A+ + W+RVA IY D+ G +L AL+ + I+ +
Sbjct: 111 AGEAAAEYLAEKGWKRVALIYGDDGAYG-RERLEGFKAALKK---AGIEVVAIEYGDLDT 166
Query: 214 SDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANA 273
+A+ LK + + +M A GL D I + A
Sbjct: 167 EKGFQALLQLLKAAPKPD----AIFACNDEMAAGALKAAREAGLTPGDISIIGFDGSPAA 222
Query: 274 LDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL 308
L + G + + D ++ A
Sbjct: 223 LL----AAGEAGPGLTTVAQPFPGDDPDQPDYPAA 253
|
Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The core structures of periplasmic binding proteins are classified into two types, and they differ in number and order of beta strands: type 1 has six beta strands, while type 2 has five beta strands per sub-domain. These two structural folds are thought to be distantly related via a common ancestor. Notably, while the N-terminal LIVBP-like domain of iGluRs belongs to the type 1 periplasmic-binding fold protein superfamily, the glutamate-binding domain of the iGluR is structurally similar to the type 2 periplasmic-binding fold. Length = 269 |
| >gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 62/306 (20%), Positives = 123/306 (40%), Gaps = 20/306 (6%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD-HNRDPFQAATAAQELIN 94
IGAI D +++ + A A A+ N ++ KLS+++ + + DPF A +L+
Sbjct: 1 NIGAIFDRDARKEELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCDLLV 60
Query: 95 KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQ 154
+ V I G + E + V I +++P +S + + +++ + +
Sbjct: 61 SQGVAAIFGPTSSESASAVQSICDALEIPHISISGGSEGLSDKEES-STTLQLYPSLEDL 119
Query: 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSIS 214
+ DL YNW + A IY+ D G L ++ + + +
Sbjct: 120 ADALLDLLEYYNWTKFAIIYDS-----DEGLSRLQELLDESGIKGIQVT------VRRLD 168
Query: 215 DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANAL 274
+ R LK+++ +SR I+ +S + + +A +G++G WI+TN L
Sbjct: 169 LDDDNYRQLLKELKRSESRRIILDCSSEEEAKEILEQAVELGMMGYGYHWILTN-----L 223
Query: 275 DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHD 334
D + + G I + D F + + E P + P A +D
Sbjct: 224 DLSDIDLEPFQYGPANITGFRLVDPDSPDVSQ--FLQRWLEESPGVNLRAPIYDAALLYD 281
Query: 335 SIKIIT 340
++ ++T
Sbjct: 282 AVLLLT 287
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. On the other hand, non-NMDA receptors have faster kinetics, are weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute to several forms of synaptic plasticity and are suggested to play an important role in the development of synaptic pathways. Length = 328 |
| >gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 36 KIGAIVDA---NSQMGKQAITAMKIAVQNFNSDSRN-HKLSLQIRDHNRDPFQAATAAQE 91
KIGAI+ + +G +++ N+ K+ L + D DP +A T A++
Sbjct: 1 KIGAILSLTGPAASLGIPEKKTLELLPDEINAGGIGGEKVELIVLDDGSDPTKAVTNARK 60
Query: 92 LINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151
LI ++KV I G T T VA +A + P++S APA + R+W + + ND
Sbjct: 61 LIEEDKVDAIIGPSTTPATMAVAPVAEEAKTPMISL-APAAAIVEPKRKWVF--KTPQND 117
Query: 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192
+ I +K + VA I + Y G+SG L A A
Sbjct: 118 RLMAEAILADMKKRGVKTVAFIGFSDAY-GESGLKELKALA 157
|
This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however. Length = 312 |
| >gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-13
Identities = 69/348 (19%), Positives = 133/348 (38%), Gaps = 45/348 (12%)
Query: 54 AMKIAVQNFNSD---SRNHKLSLQIRD-HNRDPFQAATAAQELINKEKVKVIAGMETWEE 109
A+++AV+ N+D + + D + A AA +L + V G
Sbjct: 22 AIQLAVERVNADPNLLPGYDFTFVYLDTECSES-VALLAAVDLYWEHNVDAFIGPGCPYA 80
Query: 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRR 169
A VA +A+ +P++S+ A LS +P L R + + + L R +NW
Sbjct: 81 CAPVARLAAHWNIPMISWGCVA-LSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHV 139
Query: 170 VAAIYEDNVYGGDSGKLALLAEALQNV---SSSEIQSRLVLPPISSISDPKEAVRGELKK 226
+Y D+ EAL+ + + + + S D E ++ ++K+
Sbjct: 140 AVVVYSDDSENCFF-----TLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQ-DIKR 193
Query: 227 VQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV-----------TNTVANALD 275
SR+ I+ S + L A+ +GL D V+I+ + D
Sbjct: 194 R----SRIIIMC-GSSEDVRELLLAAHDLGLTSGDYVFILIDLFNYSLPYQNSYPWERGD 248
Query: 276 SLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRR------NFTSEYPEEDHFHPSIHA 329
+ + + L I + D+ Y+EFS + T PE+ S +A
Sbjct: 249 GDDEKAKEAYDAVLTI-TLRPPDNPEYEEFSEEVKEAAKRPPFNTDAEPEQ----VSPYA 303
Query: 330 LRAHDSIKIITEAIGRLN---YNISSPEMLLRQMLSSDFSGLSGKIRF 374
+D++ + A+ + + ++ R+M + FSG++G +
Sbjct: 304 GYLYDAVLLYAHALNETLAEGGDYNGGLIITRRMWNRTFSGITGPVTI 351
|
Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family. Length = 389 |
| >gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-13
Identities = 73/379 (19%), Positives = 137/379 (36%), Gaps = 73/379 (19%)
Query: 37 IGAIVDANS--QMGKQAITAMKIAVQNFNSD-SRNHKLSLQIRDHNRDPFQAATAAQELI 93
IG ++ +S + A+TA NF + N L ++ DP + +L+
Sbjct: 5 IGVVLSGSSSEPAFRDAVTA-----ANFRHNLPYNLSLEAVAVSNDTDPISLLLSVCDLL 59
Query: 94 NKEKVKVIAGMETWEETAVVAE---IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
+ V + + +E AV +++ ++P++ + +S ++ +
Sbjct: 60 VVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGISGRESIFMSDKNIHSLFLQTGPS 119
Query: 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPI 210
+Q + ++ +Y+W + + + + G + ++ E Q L L
Sbjct: 120 LEQQADVMLEILEEYDWHQFSVVTSRD-PGYRDFLDRVETTLEESFVGWEFQLVLTLDL- 177
Query: 211 SSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN-T 269
S D + +LKK++ SRV I+L S + +F A +GL G VWIV
Sbjct: 178 -SDDDGDARLLRQLKKLE---SRV-ILLYCSKEEAERIFEAAASLGLTGPGYVWIVGELA 232
Query: 270 VANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHA 329
+ + L V G LG+ D ++
Sbjct: 233 LGSGLAPEGLPV-----GLLGV---------------------------GLDTWYSLEAR 260
Query: 330 LRAHDSIKIITEAI------------------GRLNYNISSPEMLLRQMLSSDFSGLSGK 371
+R D++ I+ A N SS + L R +++ F G +G
Sbjct: 261 VR--DAVAIVARAAESLLRDKGALPEPPVNCYDTANKRESSGQYLARFLMNVTFDGETGD 318
Query: 372 IRFK-DGELLNADTLRIVN 389
+ F DG L N L I+N
Sbjct: 319 VSFNEDGYLSNP-KLVIIN 336
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in the treatment of chronic pain. Length = 362 |
| >gnl|CDD|107340 cd06345, PBP1_ABC_ligand_binding_like_10, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 72/353 (20%), Positives = 140/353 (39%), Gaps = 37/353 (10%)
Query: 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQI--RDHNRDPFQAATAAQ 90
KIG + + S G+ ++A + N+ +++ D P A A +
Sbjct: 1 KIGVLAPLSGGASTTGEAMWNGAELAAEEINAAGGILGRKVELVFEDTEGSPEDAVRAFE 60
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPIL--SFAAPAVTPLSMSRRWPYLIRMA 148
L++++KV + G + E + ++A+ +VP + A+P +T + Y+ R
Sbjct: 61 RLVSQDKVDAVVGGYSSEVVLALQDVAAENKVPFIVTGAASPEITTADDYETYKYVFRAG 120
Query: 149 SNDSEQMKCIAD-----LARKYNWRRVAAIYEDNVYGG--DSGKLALLAEALQNVSSSEI 201
+S + +AD L K+ ++ A + ED +G D+G ALL EA V S E
Sbjct: 121 PTNSSYAQSVADALKETLVDKHGFKTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVE- 179
Query: 202 QSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261
+D L++++ V I+ S + LFT+ V
Sbjct: 180 ------RFSPDTTD----FTPILQQIKAADPDV-IIAGFSGN-VGVLFTQQWAEQKVPIP 227
Query: 262 SVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED 321
++ I +V + + + +S + + F + +++
Sbjct: 228 TIGI---SVEGNSPAFWKATNGAGNYVITAESGAP-GVEAITDKTVPFTEAYEAKFGGP- 282
Query: 322 HFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
P+ +DSI I+ EAI R + + L+ + +DF G +G+I+F
Sbjct: 283 ---PNYMGASTYDSIYILAEAIERAGS--TDGDALVEALEKTDFVGTAGRIQF 330
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. Length = 344 |
| >gnl|CDD|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R taste receptor | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 8e-11
Identities = 74/325 (22%), Positives = 133/325 (40%), Gaps = 47/325 (14%)
Query: 64 SDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA--GMETWEETAVVAEIASRVQ 121
SDS N +L + N + Q + +V+A G ++ VA + S
Sbjct: 76 SDSANFPPTLSLLSVNGSRIEP----QCNYTNYQPRVVAVIGPDSSTLALTVAPLFSFFL 131
Query: 122 VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG 181
+P +S+ A + LS +P +R +D +Q++ + L +++ W VA + D+ YG
Sbjct: 132 IPQISYGASSEV-LSNKELYPSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLGSDDEYGR 190
Query: 182 DSGKLALLAEALQNVSSSEI----QSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237
D +L + ++++ I Q + L +DP+ + LK++ + V IV
Sbjct: 191 DGLQL-----FSELIANTGICIAYQGLIPLD-----TDPETDYQQILKQINQTKVNV-IV 239
Query: 238 LQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVIS----SMEGT-LGIK 292
+ AS F + L GK VWI + SLN + S GT LG+
Sbjct: 240 VFASRQPAEAFFNSVIQQNLTGK--VWIASEAW-----SLNDELPSLPGIRNIGTVLGV- 291
Query: 293 SYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNIS- 351
+ + FS F +F + + HAL H+ ++ + G +
Sbjct: 292 ---AQQTVTIPGFSD-FIYSFA--FSVYAAVYAVAHAL--HNVLQCGS---GGCPKRVPV 340
Query: 352 SPEMLLRQMLSSDFSGLSGKIRFKD 376
P LL ++ +F+ L +RF +
Sbjct: 341 YPWQLLEELKKVNFTLLGQTVRFDE 365
|
Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors. Length = 410 |
| >gnl|CDD|107325 cd06330, PBP1_Arsenic_SBP_like, Periplasmic solute-binding domain of active transport proteins | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 78/365 (21%), Positives = 131/365 (35%), Gaps = 55/365 (15%)
Query: 36 KIGAIVD---ANSQMGKQAITAMKIAVQNFNS----DSRNHKLSLQIRDHNRDPFQAATA 88
KIG I + G+ A ++AV+ N+ R K+ L +RD P +A
Sbjct: 1 KIGVITFLSGRAAIFGEPARNGAELAVEEINAAGGIGGR--KIELVVRDEAGKPDEAIRE 58
Query: 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMA 148
A+EL+ E V ++ G+ + VA +A ++V + P L+ PY+ R
Sbjct: 59 ARELVENEGVDMLIGLISSGVALAVAPVAEELKVFFI-ATDPGTPRLTEEPDNPYVFRTR 117
Query: 149 SNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAEALQNVS-SSEIQSRL 205
++ A A K + A I D YG D+ A AL+ + E+ S
Sbjct: 118 NSTIMDAVAGALYAAKLDKKAKTWATINPDYAYGQDA--WADFKAALKRLRPDVEVVSEQ 175
Query: 206 VLPPI------SSISDPKEAVRGELKKVQDKQSR-VFIVLQASLDMTIHLFTEANRMGLV 258
P + S I+ + + +F L D+ +AN GL
Sbjct: 176 -WPKLGAPDYGSEIT-----------ALLAAKPDAIFSSLWGG-DLVT-FVRQANARGLF 221
Query: 259 GKDSVWIVTNTVANALDSLNTT----VISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFT 314
+V ++T T A L L VI G I D+ K F ++ +
Sbjct: 222 DGTTV-VLTLTGAPELAPLGDEMPEGVIIGGRGPYFIPP----DTPENKAFVDAYQEKY- 275
Query: 315 SEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISS--PEMLLRQMLSSDFSGLSGKI 372
+Y P+ A A+ ++ + A+ + PE + + F G I
Sbjct: 276 GDY-------PTYGAYGAYQAVMALAAAVEKAGATDGGAPPEQIAAALEGLSFETPGGPI 328
Query: 373 RFKDG 377
+
Sbjct: 329 TMRAA 333
|
Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Length = 346 |
| >gnl|CDD|107335 cd06340, PBP1_ABC_ligand_binding_like_6, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 16/164 (9%)
Query: 36 KIGAIV---DANSQMGKQAITAMKIAVQNFNSD----SRN-HKLSLQIRDHNRDPFQAAT 87
KIG ++ + +G+Q ++AV+ N+ S KL L D +P AT
Sbjct: 1 KIGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGNPDIGAT 60
Query: 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRM 147
A+ LI +E V + G T +++A R VP + AV+ R + Y R+
Sbjct: 61 EAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFV--VDGAVSDSITERGFKYTFRI 118
Query: 148 ASNDS----EQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGK 185
+D + + DL K + VA ++ED +G +
Sbjct: 119 TPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFGTSVAE 162
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Length = 347 |
| >gnl|CDD|107341 cd06346, PBP1_ABC_ligand_binding_like_11, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 11/153 (7%)
Query: 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFN-SDSRNHK-LSLQIRDHNRDPFQAATAAQ 90
KIG ++ + G A ++AV+ N + + ++L D DP AA
Sbjct: 1 KIGILLPLTGDLASYGPPMADAAELAVKEVNAAGGVLGEPVTLVTADTQTDPAAGVAAAT 60
Query: 91 ELINKEKVKVIAGMETWEET-AVVAEIASRVQVPILSFAAPAVTPLSMSRRWP--YLIRM 147
+L+N + V I G T A + +A V ++S P+ T +++ R
Sbjct: 61 KLVNVDGVPGIVGAACSGVTIAALTSVAVPNGVVMIS---PSSTSPTLTTLDDNGLFFRT 117
Query: 148 ASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
A +D+ Q + +A LA + ++ VA Y +N YG
Sbjct: 118 APSDALQGQALAQLAAERGYKSVATTYINNDYG 150
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. Length = 312 |
| >gnl|CDD|107337 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 37 IGAIVDANSQMGKQAITAMKIAVQNFNSDSRNH--KLSLQIRDHNRDPFQAATAAQELIN 94
G + N+ +GK ++AV++ N+ KL L + D DP QA AQ+L++
Sbjct: 5 AGPLTGPNAALGKDIKNGAQLAVEDINAKGGGKGVKLELVVEDDQADPKQAVAVAQKLVD 64
Query: 95 KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPLSMSRRWPYLIRMASNDS 152
V + G T + I + + ++S AA P +T R + + R+ + D
Sbjct: 65 D-GVVGVVGHLNSGVTIPASPIYADAGIVMISPAATNPKLT----ERGYKNVFRVVARDD 119
Query: 153 EQMKCIAD-LARKYNWRRVAAIYEDNVYG 180
+Q A ++VA I + YG
Sbjct: 120 QQGPAAAKYAVETLKAKKVAIIDDKTAYG 148
|
This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few. Length = 334 |
| >gnl|CDD|107342 cd06347, PBP1_ABC_ligand_binding_like_12, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 36 KIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQ 90
KIG + + G+ K+AV+ N+ K+ L + D+ D +AA AA
Sbjct: 1 KIGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGGVLGKKIELVVEDNKSDKEEAANAAT 60
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
LI+++KV I G T T IA +VP+++ P+ T +++ Y+ R+
Sbjct: 61 RLIDQDKVVAIIGPVTSGATLAAGPIAEDAKVPMIT---PSATNPKVTQGKDYVFRVCFI 117
Query: 151 DSEQMKCIADLARKYNWRRVAAIYEDN 177
D Q +A A + + AA+ DN
Sbjct: 118 DPFQGTVMAKFATENLKAKKAAVLYDN 144
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. Length = 334 |
| >gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 64/321 (19%), Positives = 125/321 (38%), Gaps = 37/321 (11%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSD---SRNHKLSLQIRDHNR-DPFQAATAAQE 91
+IGAI D ++ +Q A + A+ N++ L I + N D F+ A +
Sbjct: 1 RIGAIFDEDA---RQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACD 57
Query: 92 LINKEKVKVIAGMETWEETAVVAEIASRVQVP-ILSFAAPAVTPLSMSRRWPYLIRMASN 150
L+++ V I G + V I +++P I + +P P + M
Sbjct: 58 LLSQ-GVAAIFGPSSSSSANTVQSICDALEIPHITTSWSPNPKPRQFTI--NLYPSMRDL 114
Query: 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPI 210
+ DL + + WR+ IY+ D G L L E L + + V +
Sbjct: 115 S----DALLDLIKYFGWRKFVYIYDS-----DEG-LLRLQELLD---ALSPKGIQVT--V 159
Query: 211 SSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270
+ D + R LK+++ ++ R I+L S + +A +G++ + +I+TN
Sbjct: 160 RRLDDDTDMYRPLLKEIKREKER-RIILDCSPERLKEFLEQAVEVGMMSEYYHYILTN-- 216
Query: 271 ANALDSLNTTVISSMEGTLGIKSYY--SDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIH 328
LD + G + I + D+ ++F + R+ P
Sbjct: 217 ---LDFHTLDLELFRYGGVNITGFRLVDPDNPEVQKFIQRWERSDHRICPGSGLKPIKTE 273
Query: 329 ALRAHDSIKIITEAIGRLNYN 349
+ +D++ + T GR+ ++
Sbjct: 274 SALTYDAVLLFT---GRIQFD 291
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. Non-NMDA receptors have faster kinetics, are most often only weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute several forms of synaptic plasticity and are thought to play an important role in the development of synaptic pathways. Non-NMDA receptors include alpha-amino-3-hydroxy-5-methyl-4-isoxazole proprionate (AMPA) and kainate receptors. Length = 324 |
| >gnl|CDD|107322 cd06327, PBP1_SBP_like_1, Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 56/291 (19%), Positives = 103/291 (35%), Gaps = 42/291 (14%)
Query: 36 KIGAIVDAN----SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQE 91
KIG + D + GK ++ A ++AV++F + L + DH AA A+E
Sbjct: 1 KIGVLTDMSGVYADAEGKGSVEAAELAVEDFGGGVLGRPIELVVADHQNKADVAAAKARE 60
Query: 92 LINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPL---SMSR---RWPYLI 145
I+++ V +I G V E+A + + L S W Y
Sbjct: 61 WIDRDGVDMIVGGPNSAVALAVQEVAREKKKIYI-VTGAGSDDLTGKDCSPYTFHWAYDT 119
Query: 146 RMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSS---EIQ 202
M +N L + ++ + D +G L +A + V ++ +
Sbjct: 120 YMLAN-----GTAPALVKAGG-KKWFFLTADYAFGHS-----LERDARKVVKANGGKVVG 168
Query: 203 SRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262
S V P+ + SD L + Q + V ++ A D + +A GL
Sbjct: 169 S--VRHPLGT-SD----FSSYLLQAQASGADVLVLANAGADTVNAI-KQAAEFGLTKGQK 220
Query: 263 --VWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPY-KEFSALFR 310
++ T ++L +G ++Y D + + F F+
Sbjct: 221 LAGLLLFLTDVHSLGLDA------AQGLYLTTAWYWDLPNDETRAFVKRFQ 265
|
Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids. Length = 334 |
| >gnl|CDD|107333 cd06338, PBP1_ABC_ligand_binding_like_5, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 74/364 (20%), Positives = 141/364 (38%), Gaps = 59/364 (16%)
Query: 36 KIGAIVD---ANSQMGKQAITAMKIAVQNFNS------DSRNHKLSLQIRDHNRDPFQAA 86
+IGA + + G+ ++ V++ N+ + + + L D +P +AA
Sbjct: 1 RIGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYDDQSNPARAA 60
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR 146
A + LI ++KV + G + T A +A + VP++ A + ++ + Y+
Sbjct: 61 RAYERLITQDKVDFLLGPYSSGLTLAAAPVAEKYGVPMV--AGSGASDSIFAQGFKYVFG 118
Query: 147 MASNDSEQMKCIADLARKYNWR--RVAAIYEDNVYGGDSGKLALLAEALQNVSSS---EI 201
S+ K + ++ + R +VA +Y D+ + D +AE + + + E+
Sbjct: 119 TLPPASQYAKSLLEMLVALDPRPKKVAILYADDPFSQD------VAEGAREKAEAAGLEV 172
Query: 202 QSRLVLPP----ISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257
PP +S + + K K + V+ A L M
Sbjct: 173 VYDETYPPGTADLSPL----------ISKA--KAAGPDAVVVAGHFPDAVLLVRQ--MKE 218
Query: 258 VGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSY-----YSDDSSP-YKEFSALFRR 311
+G + + TV A + + + EG G + Y DD P EF+A ++
Sbjct: 219 LGYNPKALYM-TVGPAFPAFVKALGADAEGVFGPTQWTPALDYKDDLFPSAAEFAAAYKE 277
Query: 312 NFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSS-DFSGLSG 370
+ P HA A+ + +++ EA+ R S +R L+S DF G
Sbjct: 278 KYGKA--------PDYHAAGAYAAGQVLQEAVERAG---SLDPAAVRDALASNDFDTFYG 326
Query: 371 KIRF 374
I+F
Sbjct: 327 PIKF 330
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally. Length = 345 |
| >gnl|CDD|107343 cd06348, PBP1_ABC_ligand_binding_like_13, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 86/363 (23%), Positives = 155/363 (42%), Gaps = 65/363 (17%)
Query: 45 SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA 102
+ G++ + +K+A FN + L I D D +A A Q LINK++V I
Sbjct: 13 ALYGQEQLAGLKLAEDRFNQAGGVNGRPIKLVIEDSGGDEAEAINAFQTLINKDRVLAII 72
Query: 103 GMETWEETAVVAE-IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADL 161
G T + A A+ IA R VP++ P+ T + PY+ R+++ ++
Sbjct: 73 G-PTLSQQAFAADPIAERAGVPVV---GPSNTAKGIPEIGPYVFRVSAPEAVVAPAAIAA 128
Query: 162 ARKYNW--RRVAAIY-EDNVYGGDSGKLALLAEALQNVSSSEI-QSRLVLPPISSISDPK 217
A K N +RVA Y +D+ + +VS +EI Q L ++ +
Sbjct: 129 ALKLNPGIKRVAVFYAQDDAF---------------SVSETEIFQKALRDQGLNLV---- 169
Query: 218 EAVRGELKKVQDKQSRVFIVLQASLDMTI---------HLFTEANRMGLVGKDSVWIVTN 268
V+ D Q+++ VL + D+ + +L + +G G IV
Sbjct: 170 -TVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLVRQLRELGYNGL----IV-- 222
Query: 269 TVANALDSLNTTVI--SSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPS 326
N ++ N + ++ +G L ++Y ++ +P R+F Y ++ P
Sbjct: 223 -GGNGFNTPNVFPVCQAACDGVLVAQAYSPENDTPVN-------RDFVEAYKKKYGKAPP 274
Query: 327 IHALRAHDSIKIITEAIGRLNY-----NISSPEM---LLRQMLSSDFSGLSGKIRF-KDG 377
+ +A D+++++ EA+ RLN + PE+ L +LS + G+I F DG
Sbjct: 275 QFSAQAFDAVQVVAEALKRLNQKQKLAELPLPELRTALNAALLSGQYDTPLGEISFTPDG 334
Query: 378 ELL 380
E+L
Sbjct: 335 EVL 337
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. Length = 344 |
| >gnl|CDD|107327 cd06332, PBP1_aromatic_compounds_like, Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 62/357 (17%), Positives = 125/357 (35%), Gaps = 57/357 (15%)
Query: 36 KIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQEL 92
KIG + + +G+ ++A++ + + + D P A AA++L
Sbjct: 1 KIGLLTTLSGPYAALGQDIRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKL 60
Query: 93 INKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDS 152
I ++KV V+ G V + ++S + L+ P R + +
Sbjct: 61 IEQDKVDVVVGPVFSNVALAVVPSLTESGTFLIS-PNAGPSDLAGKLCSPNFFRTSWQND 119
Query: 153 EQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS 212
+ + + A +++V I D G D+ + E+ + P
Sbjct: 120 QVHEAMGKYAADKGYKKVVIIAPDYAAGKDA------VAGFKRTFKGEVVEEVYTPL--- 170
Query: 213 ISDPKEAVRGELKKV-QDKQSRVFIVL-------------QASLDMTIHLFTEANRMGLV 258
+ EL ++ K VF+ L QA L I L+
Sbjct: 171 ---GQLDFSAELAQIRAAKPDAVFVFLPGGMAVNFVKQYDQAGLKKKIPLY--------- 218
Query: 259 GKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSP-YKEFSALFRRNFTSEY 317
+T+ D+L + G L + D +P K F A ++ Y
Sbjct: 219 ---GPGFLTDQ-----DTLP-AQGDAAVGVLTALHWAPDLDNPANKRFVAAYKA----AY 265
Query: 318 PEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
PS++A + +D+ +++ A+ + ++S + L + ++DF G +F
Sbjct: 266 GRV----PSVYAAQGYDAAQLLDAALRAVGGDLSDKDALRAALRAADFDSPRGPFKF 318
|
This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea. Length = 333 |
| >gnl|CDD|107330 cd06335, PBP1_ABC_ligand_binding_like_2, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 22/159 (13%)
Query: 36 KIGAIVD---ANSQMGKQAITA-MKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAA 89
KIG D ++ G +I ++A+ N+ KL L RD +P + A
Sbjct: 1 KIGVDADFSGGSAPSG-VSIRRGARLAIDEINAAGGVLGRKLELVERDDRGNPARGLQNA 59
Query: 90 QELINKEKV-KVIAGMETWEETAVVA--EIASRVQVPILSFAAPAVTPLSMSRRWP---- 142
QEL EKV V+ G+ T +A E + ++P++ A A TP++ R
Sbjct: 60 QELAADEKVVAVLGGLHT---PVALANLEFIQQNKIPLIGPWA-AGTPIT---RNGAPPN 112
Query: 143 YLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYG 180
Y+ R++++DS Q + D A ++ +++VA + ++ +G
Sbjct: 113 YIFRVSADDSIQAPFLVDEAVKRGGFKKVALLLDNTGWG 151
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Length = 347 |
| >gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 67/311 (21%), Positives = 125/311 (40%), Gaps = 51/311 (16%)
Query: 46 QMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD---HN-----------RDPFQAATA 88
Q G Q + AM + N+D N L +IRD H+ RD +
Sbjct: 38 QYGIQRVEAMFHTLDRINADPVLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRD 97
Query: 89 AQELINK--------EKVKVIAGMETWEETAVVAEIASRVQV-PILSFAAPAVTP-LSMS 138
++ +N + K I G+ ++V ++ + +Q+ I A A + LS
Sbjct: 98 EKDGVNPDGQSPGPNKSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDK 157
Query: 139 RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSS 198
+ Y +R+ +D+ Q + + D+ ++YNW V+A++ + Y G+SG EA + +++
Sbjct: 158 TLFKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNY-GESG-----MEAFKELAA 211
Query: 199 SEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLV 258
E I S + + L+K++ + + +V+ MT+ A R V
Sbjct: 212 HEGLCIAHSDKIYSNAGEQS-FDRLLRKLRSRLPKARVVVCFCEGMTVRGLLMAMRRLGV 270
Query: 259 GKDSVWIVTNTVANALDSLNTTVISSME----GTLGIKSYYSDDSSPYKEFSALFRRNFT 314
G + I ++ A+ D V+ E G + IK + S F +
Sbjct: 271 GGEFQLIGSDGWADRDD-----VVEGYEEEAEGGITIKLQSPEVPS--------FDDYYL 317
Query: 315 SEYPEEDHFHP 325
PE + +P
Sbjct: 318 KLRPETNTRNP 328
|
Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 472 |
| >gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 60/276 (21%), Positives = 114/276 (41%), Gaps = 36/276 (13%)
Query: 54 AMKIAVQ--NFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK---------------- 95
AM A++ N ++ L +I D + A A ++K
Sbjct: 40 AMIHAIEMINNSTLLLGVTLGYEIYDTCSEVTTAMAAVLRFLSKFNCSRSTVEFKCDYSQ 99
Query: 96 --EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSE 153
++K + G E + V+ + + +P +S+A+ A LS R+P +R +D
Sbjct: 100 YVPRIKAVIGAGYSEISMAVSRMLNLQLIPQVSYASTA-EILSDKIRFPSFLRTVPSDFY 158
Query: 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSE-IQSRLVLPPISS 212
Q K +A L +K W V I D D G+ AL +Q ++ I + +LP +S
Sbjct: 159 QTKAMAHLIKKSGWNWVGIIITD----DDYGRSALETFIIQAEANGVCIAFKEILP--AS 212
Query: 213 ISDPKEAV---RGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269
+SD + R K +++ + V +V + + LF +A + + VWI ++
Sbjct: 213 LSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFL-LFNKAIERNI---NKVWIASDN 268
Query: 270 VANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEF 305
+ A L + + +G ++ S + S + +F
Sbjct: 269 WSTAKKILTDPNVKKIGKVVGF-TFKSGNISSFHQF 303
|
This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. Length = 403 |
| >gnl|CDD|107321 cd06326, PBP1_STKc_like, Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 9e-06
Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 10/190 (5%)
Query: 43 ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKV 100
+ +G+ + N+ K+ L D +P + ++LI +KV
Sbjct: 12 PAAALGRAYRAGAQAYFDAVNAAGGVNGRKIELVTLDDGYEPERTVANTRKLIEDDKVFA 71
Query: 101 IAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIAD 160
+ G TA + VP++ A + R + +R AS E I
Sbjct: 72 LFGYVGTPTTAAALPLLEEAGVPLVGPFTGASSLRDPPDRNVFNVR-ASYADEIAA-IVR 129
Query: 161 LARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAV 220
+R+A Y+D+ + G G LA + +AL + + +D AV
Sbjct: 130 HLVTLGLKRIAVFYQDDAF-GKDG-LAGVEKALAARGLKPVA-TASYERNT--ADVAAAV 184
Query: 221 RGELKKVQDK 230
+L + +
Sbjct: 185 A-QLAAARPQ 193
|
The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however. Length = 336 |
| >gnl|CDD|107334 cd06339, PBP1_YraM_LppC_lipoprotein_like, Periplasmic binding component of lipoprotein LppC, an immunodominant antigen | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 57/331 (17%), Positives = 105/331 (31%), Gaps = 51/331 (15%)
Query: 64 SDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVP 123
D + L++ D AA AA++ + E +I G E A +A A+ + VP
Sbjct: 28 YDLNGASIELRVYD-TAGAAGAAAAARQAV-AEGADIIVGPLLKENVAALAAAAAELGVP 85
Query: 124 ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDS 183
+L+ P L + ++ + A+ AR RR + D YG
Sbjct: 86 VLAL-----NNDESVAAGPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAPDGAYG--- 137
Query: 184 GKLALLAEALQNVSSSEIQSR-LVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL 242
+A+A + Q + I S + ++++ Q
Sbjct: 138 ---QRVADAFRQ----AWQQLGGTVVAIESYDPSPTDLSDAIRRLLGVDDSE----QRIA 186
Query: 243 DMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSY-----YSD 297
+ R + D++ V A + ++ + Y YS
Sbjct: 187 QLKSLESEPRRRQDI---DAIDAVALPDGEAR-LIKPQLLFYYGVPGDVPLYGTSRWYSG 242
Query: 298 DSSPYKE-------FSA---LFRRNFTSEYPEEDHFHPS--IHALRAHDSIKIITEAIGR 345
+P ++ F+ L NF Y + P + AL +D+ +
Sbjct: 243 TPAPLRDPDLNGAWFADPPWLLDANFELRYRAAYGWPPLSRLAAL-GYDAYAL----AAA 297
Query: 346 LNYNISSPEMLLRQMLSSDFSGLSGKIRFKD 376
L L + FSG++G +R
Sbjct: 298 LAQLGQGDAALTP---GAGFSGVTGVLRLDP 325
|
This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT). Length = 336 |
| >gnl|CDD|107332 cd06337, PBP1_ABC_ligand_binding_like_4, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 41 VDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKV 100
D ++ A + V +++ + +RD +P +A AQELI +KV +
Sbjct: 18 ADPWVLETMRSALADGLVVG-----GSTYEVEIIVRDSQSNPNRAGLVAQELILTDKVDL 72
Query: 101 IAGMETWEETAVVAEIASRVQVPILSFAAP 130
+ T + T V++ VP +S AP
Sbjct: 73 LLAGGTPDTTNPVSDQCEANGVPCISTMAP 102
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Length = 357 |
| >gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group III metabotropic glutamate receptor | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 26/164 (15%)
Query: 42 DANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRDH-NRDPF---QAATAAQELIN 94
D + G + AM A+ NSD N L +I D +RD + Q+ T Q LI
Sbjct: 23 DIKKENGIHRLEAMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQ 82
Query: 95 K------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS 136
K EKV + G + +VA I Q+P +S+A+ A LS
Sbjct: 83 KDTSDVRCTNGEPPVFVKPEKVVGVIGASASSVSIMVANILRLFQIPQISYASTA-PELS 141
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
RR+ + R+ DS Q + + D+ + W V+ + + YG
Sbjct: 142 DDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGNYG 185
|
Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 463 |
| >gnl|CDD|107370 cd06375, PBP1_mGluR_groupII, Ligand binding domain of the group II metabotropic glutamate receptor | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 72/316 (22%), Positives = 120/316 (37%), Gaps = 61/316 (19%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRDH-NRDPFQAATAAQ--------- 90
N G Q + AM A+ N+D R KL + I D +RD + + +
Sbjct: 25 NEDRGIQRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRASLTKV 84
Query: 91 ---ELINKEKVKVIAGMETWEETAVVAEIASRV-----------QVPILSFAAPAVTPLS 136
E + + V+ S V Q+P +S+A+ + LS
Sbjct: 85 DTSEYECPDGSYAVQENSPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAK-LS 143
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA-LQN 195
R+ Y R D Q K +A++ R +NW V+ + + Y G++G A EA L+N
Sbjct: 144 DKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDY-GETGIEAFEQEARLRN 202
Query: 196 V--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253
+ ++SE R S+ ++V +L Q +RV ++ S D L A
Sbjct: 203 ICIATSEKVGR------SADRKSYDSVIRKLL--QKPNARVVVLFTRSEDAR-ELLAAAK 253
Query: 254 RMGL----VGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALF 309
R+ V D W ++ + + I T+ + S+ P +F
Sbjct: 254 RLNASFTWVASDG-WGAQESIVKGSEDVAEGAI-----TIELASH------PIPDFD--- 298
Query: 310 RRNFTSEYPEEDHFHP 325
R F S PE + +P
Sbjct: 299 -RYFQSLTPETNTRNP 313
|
Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 458 |
| >gnl|CDD|107331 cd06336, PBP1_ABC_ligand_binding_like_3, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 60/308 (19%), Positives = 110/308 (35%), Gaps = 39/308 (12%)
Query: 48 GKQAITAMKIAVQNFNS------DSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVI 101
G + +++A + N+ + +K+ + D DP +AA A+ L+ ++ VK I
Sbjct: 16 GLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAAANARRLVQQDGVKFI 75
Query: 102 AGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADL 161
G TA +I R +V +L A + + P R+ +
Sbjct: 76 LGPIGGGITA-AQQITERNKV-LLLTAYSSD-LSIDTAGNPLTFRVPPIYNVYGVPFLAY 132
Query: 162 ARKYNWRRVAAIYEDNVYGGDSGKLALLA-EALQNVSSSEIQSRLVLPPISSIS-DPKEA 219
A+K ++VA + ++ YG A EA ++ +S DP
Sbjct: 133 AKKPGGKKVALLGPNDAYGQPWVAAYKAAWEAA----GGKV--------VSEEPYDPGTT 180
Query: 220 -VRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANR-MGLVGKDSVWIVTNTVANALDSL 277
+ K+ ++ V + S L + R +G G ++ T + L
Sbjct: 181 DFSPIVTKLLAEKPDVIFLGGPSPAPA-ALVIKQARELGFKGG----FLSCTGDKYDELL 235
Query: 278 NTTVISSMEGTLGIKSYYSDDSSPYKEFSAL--FRRNFTSEYPEEDHFHPSIHALRAHDS 335
T MEG + D P F F + Y E P+ A ++D+
Sbjct: 236 VATGADFMEGVYF---QFPDVDDPALAFPRAKAFVEEYKKRYGEP----PNSEAAVSYDA 288
Query: 336 IKIITEAI 343
+ I+ A+
Sbjct: 289 VYILKAAM 296
|
This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Length = 347 |
| >gnl|CDD|107368 cd06373, PBP1_NPR_like, Ligand binding domain of natriuretic peptide receptor (NPR) family | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 55/225 (24%), Positives = 87/225 (38%), Gaps = 26/225 (11%)
Query: 54 AMKIAVQNFNSDS---RNHKLSLQIRD----HNRDPFQAATAAQELINKEKVKVIAGMET 106
A+ IAV+ N+D H ++L D +A A +L + K G
Sbjct: 23 AIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLYFQHKPDAFLGPGC 82
Query: 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN 166
A VA A+ VP+L+ APA S + L R + ++ + + L +N
Sbjct: 83 EYAAAPVARFAAHWNVPVLTAGAPA-AGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFN 141
Query: 167 WRRVAAIYEDNVYGGD------SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAV 220
W R A +Y D+ G +L E VS L D KE
Sbjct: 142 WSRAALLYHDDKNDDRPCYFTLEGVYTVLKEENITVSDFPFDEDKEL------DDYKEL- 194
Query: 221 RGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265
L+ + K+ RV +++ AS D + A+R+GL + V+
Sbjct: 195 ---LRDIS-KKGRV-VIMCASPDTVREIMLAAHRLGLTSGEYVFF 234
|
Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proliferation. NPR-C acts as the receptor for all the three members of NP family, and functions as a clearance receptor. Unlike NPR-A and -B, NPR-C lacks an intracellular guanylyl cyclase domain and is thought to exert biological actions by sequestration of released natriuretic peptides and/or inhibition of adenylyl cyclase. Length = 396 |
| >gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic glutamate receptors (mGluR) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 26/162 (16%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDH-NRDPF---QAATAAQELINK- 95
Q G Q + AM A+ N+D L I D +RD + Q+ + + K
Sbjct: 25 KEQRGIQRLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALEQSLEFVRASLTKI 84
Query: 96 EKVKVIAGMETWEET------AVVAEIASRV-----------QVPILSFAAPAVTPLSMS 138
+ G V+ S V ++P +S+A+ + LS
Sbjct: 85 DDCVYCDGGSPPPNNSPKPVAGVIGASYSSVSIQVANLLRLFKIPQISYASTS-PELSDK 143
Query: 139 RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
R+ Y R DS Q + + D+ + +NW V+ + + YG
Sbjct: 144 TRYDYFSRTVPPDSFQAQAMVDIVKAFNWTYVSTVASEGNYG 185
|
Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III. Length = 452 |
| >gnl|CDD|107323 cd06328, PBP1_SBP_like_2, Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 70 KLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA 129
+ + ++D +P A + A+ELI + V ++ G + V +A + ++
Sbjct: 41 PIEVIVKDDAGNPEVAVSLARELIGDDGVDILVGSTSSGVALAVLPVAEENKKILIV--E 98
Query: 130 PAVTPLSMSRRWP-YLIRMASNDSEQMKCIAD-LARKYNWRRVAAIYEDNVYGGDS 183
PA + W Y R N S+ A L + +++A + +D +G D
Sbjct: 99 PAAADSITGKNWNRYTFRTGRNSSQDAIAAAAALGKPG--KKIATLAQDYAFGRDG 152
|
Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids. Length = 333 |
| >gnl|CDD|107374 cd06379, PBP1_iGluR_NMDA_NR1, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 49/240 (20%), Positives = 95/240 (39%), Gaps = 37/240 (15%)
Query: 160 DLARKYNWRRVAAIYEDNVYG-GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKE 218
++ R + W +V + D+ G + L E EI+ ++ + + ++
Sbjct: 147 EMLRSFKWNKVILLVSDDHEGRAAQKRFETLLE------EREIEFKIKVEKVVEFEPGEK 200
Query: 219 AVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLN 278
V L++ ++ SRV I+L AS D ++ A + + G+ VWIV+ A + N
Sbjct: 201 NVTSLLQEAKELTSRV-ILLSASEDDAAVIYRNAGMLNMTGEGYVWIVSE---QAGAARN 256
Query: 279 TTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKI 338
G LG++ + E S + D A++ +
Sbjct: 257 APD-----GVLGLQLINGKN-----ESSHI-----------RDAVAVLASAIQELFEKEN 295
Query: 339 ITEA---IGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF-KDGELLNADTLRIVNVVGKK 394
ITE + + R ++SS + G +G++ F DG+ A+ I+N+ +K
Sbjct: 296 ITEPPRECVGNTVIWETGPLFKRALMSSKYPGETGRVEFNDDGDRKFAN-YDIMNIQNRK 354
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore can be classified as excitatory glycine receptors. NR1/NR3 receptors are calcium-impermeable and unaffected by ligands acting at the NR2 glutamate-binding site. Length = 377 |
| >gnl|CDD|107377 cd06382, PBP1_iGluR_Kainate, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 56/259 (21%), Positives = 95/259 (36%), Gaps = 54/259 (20%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSD---SRNHKLSLQIRDHNR-DPFQAATAAQE 91
+IGAI + A + A+ N + N L I+ D F+ +
Sbjct: 1 RIGAI--FDDDDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCD 58
Query: 92 LINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151
L+ + V I G + E +++V I ++P + RW
Sbjct: 59 LLQ-QGVAAIFGPSSSEASSIVQSICDAKEIPHIQT------------RWDP----EPKS 101
Query: 152 SEQM------------KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ--NVS 197
+ Q + AD+ + +NW+ IYE L L E LQ +S
Sbjct: 102 NRQFTINLYPSNADLSRAYADIVKSFNWKSFTIIYESAEG------LLRLQELLQAFGIS 155
Query: 198 SSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF-IVLQASLDMTIHLFTEANRMG 256
I R + D R LK++ K S I++ S D+ I L +A ++G
Sbjct: 156 GITITVRQLDDD----LDY----RPLLKEI--KNSGDNRIIIDCSADILIELLKQAQQVG 205
Query: 257 LVGKDSVWIVTNTVANALD 275
++ + +I+TN + LD
Sbjct: 206 MMSEYYHYIITNLDLHTLD 224
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMAP receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined. Length = 327 |
| >gnl|CDD|107373 cd06378, PBP1_iGluR_NMDA_NR2, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 200 EIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259
E+QS L L D + + +LKK++ S+V I+L S + ++F A GL G
Sbjct: 167 ELQSVLTLDMSDDDGDAR--TQRQLKKLE---SQV-ILLYCSKEEAEYIFRAARSAGLTG 220
Query: 260 KDSVWIVTNTVA 271
VWIV + V
Sbjct: 221 PGYVWIVPSLVL 232
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in the treatment of chronic pain. Length = 362 |
| >gnl|CDD|214911 smart00918, Lig_chan-Glu_bd, Ligated ion channel L-glutamate- and glycine-binding site | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 468 FVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFV-PHDGVYDDLINGVYD 526
+V++K+ P GN R++G+ I+L + + L + YE + DG Y G
Sbjct: 2 YVMLKESPDGGND-----RFEGYCIDLLKELAKKLGFT--YEIILVPDGKY-----GARL 49
Query: 527 KVNYFN 532
+N
Sbjct: 50 PNGSWN 55
|
This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine. It is found in association with Lig_chan. Length = 62 |
| >gnl|CDD|107376 cd06381, PBP1_iGluR_delta_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 71/374 (18%), Positives = 129/374 (34%), Gaps = 79/374 (21%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSD-SRNHKLSLQIR--DHNRDPFQAATAAQEL 92
IGAI ++ + + A+ + N N + K++L I D N + F A A +L
Sbjct: 1 HIGAIFSESALEDDE-VFAVAVIDLNINEQILQTEKITLSISFIDLN-NHFDAVQEACDL 58
Query: 93 INKEKVKVIAGMETWEETAVVAE--IASRVQVPILSFA-APAVTPLSMSRRWPYLIRMAS 149
+N+ ++A + + + +A + + +P L +P + P S
Sbjct: 59 MNQ---GILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNP------S 109
Query: 150 NDSEQMK-----------CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSS 198
+Q + L ++ W++ Y DN Y + L E L +S
Sbjct: 110 PRGQQYTLALRPPVRLNDVMLRLVTEWRWQKFVYFY-DNDY-----DIRGLQEFLDQLSR 163
Query: 199 SEIQSRL--VLPPISS-ISDPKEAVR-GELKKVQDKQSRVFIVLQASLDMTIHLFTEANR 254
I L V IS + +R EL + +D R ++L S + +
Sbjct: 164 QGIDVLLQKVDLNISKMATALFTTMRCEELNRYRDTLRRALLLL--SPNGAYTFIDASVE 221
Query: 255 MGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFS-------- 306
L KDS W + N D+ ++ G + + + FS
Sbjct: 222 TNLAIKDSHWFLIN--EEISDTEIDELVRYAHGRM---------TVIRQTFSKEKTNQRC 270
Query: 307 -ALFRRNFTSEYPEEDHF--HPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSS 363
R + +D + I L +DS+ +LL +
Sbjct: 271 LRNNHRISSLLCDPKDGYLQMLEISNLYIYDSVL-----------------LLLETIKKG 313
Query: 364 DFSGLSGKIRFKDG 377
+GL+GK+ F +G
Sbjct: 314 PITGLTGKLEFNEG 327
|
This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. GluRdelta2 was shown to function as an AMPA-like receptor by mutation analysis. Moreover, targeted disruption of GluRdelta2 gene caused motor coordination impairment, Purkinje cell maturation, and long-term depression of synaptic transmission. It has been suggested that GluRdelta2 is the receptor for cerebellin 1, a glycoprotein of the Clq, and the tumor necrosis factor family which is secreted from cerebellar granule cells. Furthermore, recent studies have shown that the orphan GluRdelta1 plays an essential role in high-frequency hearing and ionic homeostasis in the basal cochlea and that the locus encoding GluRdelta1 may be involved in congenial or acquired high-frequency hearing loss in humans. Length = 363 |
| >gnl|CDD|107337 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.004
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 309 FRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGL 368
F + +++ + P +A A+D+ ++ EAI + P + + DF G+
Sbjct: 259 FVARYKAKFGDP----PGAYAPYAYDAANVLAEAI--KKAGSTDPAKVADALRKVDFDGV 312
Query: 369 SGKIRFKD-GELLNAD 383
+GKI F G+L A
Sbjct: 313 TGKISFDAKGDLKGAA 328
|
This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few. Length = 334 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 550 | |||
| KOG1054 | 897 | consensus Glutamate-gated AMPA-type ion channel re | 100.0 | |
| KOG4440 | 993 | consensus NMDA selective glutamate-gated ion chann | 100.0 | |
| cd06390 | 364 | PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin | 100.0 | |
| cd06387 | 372 | PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin | 100.0 | |
| cd06392 | 400 | PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v | 100.0 | |
| KOG1053 | 1258 | consensus Glutamate-gated NMDA-type ion channel re | 100.0 | |
| cd06362 | 452 | PBP1_mGluR Ligand binding domain of the metabotrop | 100.0 | |
| cd06364 | 510 | PBP1_CaSR Ligand-binding domain of the CaSR calciu | 100.0 | |
| cd06388 | 371 | PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin | 100.0 | |
| cd06393 | 384 | PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol | 100.0 | |
| cd06389 | 370 | PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin | 100.0 | |
| cd06365 | 469 | PBP1_Pheromone_receptor Ligand-binding domain of t | 100.0 | |
| cd06374 | 472 | PBP1_mGluR_groupI Ligand binding domain of the gro | 100.0 | |
| cd06361 | 403 | PBP1_GPC6A_like Ligand-binding domain of the promi | 100.0 | |
| cd06375 | 458 | PBP1_mGluR_groupII Ligand binding domain of the gr | 100.0 | |
| cd06376 | 463 | PBP1_mGluR_groupIII Ligand-binding domain of the g | 100.0 | |
| cd06380 | 382 | PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali | 100.0 | |
| cd06366 | 350 | PBP1_GABAb_receptor Ligand-binding domain of GABAb | 100.0 | |
| cd06379 | 377 | PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/ | 100.0 | |
| cd06367 | 362 | PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali | 100.0 | |
| cd06391 | 400 | PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v | 100.0 | |
| cd06386 | 387 | PBP1_NPR_C_like Ligand-binding domain of type C na | 100.0 | |
| cd06394 | 333 | PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu | 100.0 | |
| cd06372 | 391 | PBP1_GC_G_like Ligand-binding domain of membrane g | 100.0 | |
| cd06363 | 410 | PBP1_Taste_receptor Ligand-binding domain of the T | 100.0 | |
| cd06370 | 404 | PBP1_Speract_GC_like Ligand-binding domain of memb | 100.0 | |
| cd06352 | 389 | PBP1_NPR_GC_like Ligand-binding domain of membrane | 100.0 | |
| cd06373 | 396 | PBP1_NPR_like Ligand binding domain of natriuretic | 100.0 | |
| cd06385 | 405 | PBP1_NPR_A Ligand-binding domain of type A natriur | 100.0 | |
| cd06382 | 327 | PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v | 100.0 | |
| cd06371 | 382 | PBP1_sensory_GC_DEF_like Ligand-binding domain of | 100.0 | |
| cd06384 | 399 | PBP1_NPR_B Ligand-binding domain of type B natriur | 100.0 | |
| cd06381 | 363 | PBP1_iGluR_delta_like N-terminal leucine/isoleucin | 100.0 | |
| PRK15404 | 369 | leucine ABC transporter subunit substrate-binding | 100.0 | |
| KOG1056 | 878 | consensus Glutamate-gated metabotropic ion channel | 100.0 | |
| cd06368 | 324 | PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu | 100.0 | |
| PF01094 | 348 | ANF_receptor: Receptor family ligand binding regio | 100.0 | |
| cd06342 | 334 | PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind | 100.0 | |
| cd06378 | 362 | PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/ | 100.0 | |
| cd06338 | 345 | PBP1_ABC_ligand_binding_like_5 Type I periplasmic | 100.0 | |
| cd06345 | 344 | PBP1_ABC_ligand_binding_like_10 Type I periplasmic | 100.0 | |
| cd06346 | 312 | PBP1_ABC_ligand_binding_like_11 Type I periplasmic | 100.0 | |
| cd06348 | 344 | PBP1_ABC_ligand_binding_like_13 Type I periplasmic | 100.0 | |
| cd06377 | 382 | PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/ | 100.0 | |
| cd06340 | 347 | PBP1_ABC_ligand_binding_like_6 Type I periplasmic | 100.0 | |
| cd06355 | 348 | PBP1_FmdD_like Periplasmic component (FmdD) of an | 100.0 | |
| cd06383 | 368 | PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine | 100.0 | |
| cd06350 | 348 | PBP1_GPCR_family_C_like Ligand-binding domain of m | 100.0 | |
| cd06343 | 362 | PBP1_ABC_ligand_binding_like_8 Type I periplasmic | 100.0 | |
| TIGR03669 | 374 | urea_ABC_arch urea ABC transporter, substrate-bind | 100.0 | |
| cd06347 | 334 | PBP1_ABC_ligand_binding_like_12 Type I periplasmic | 100.0 | |
| cd06344 | 332 | PBP1_ABC_ligand_binding_like_9 Type I periplasmic | 100.0 | |
| COG0683 | 366 | LivK ABC-type branched-chain amino acid transport | 100.0 | |
| cd06331 | 333 | PBP1_AmiC_like Type I periplasmic components of am | 100.0 | |
| cd06329 | 342 | PBP1_SBP_like_3 Periplasmic solute-binding domain | 100.0 | |
| TIGR03407 | 359 | urea_ABC_UrtA urea ABC transporter, urea binding p | 100.0 | |
| PF13458 | 343 | Peripla_BP_6: Periplasmic binding protein; PDB: 4E | 100.0 | |
| cd06351 | 328 | PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc | 100.0 | |
| cd06349 | 340 | PBP1_ABC_ligand_binding_like_14 Type I periplasmic | 100.0 | |
| cd06327 | 334 | PBP1_SBP_like_1 Periplasmic solute-binding domain | 100.0 | |
| cd06330 | 346 | PBP1_Arsenic_SBP_like Periplasmic solute-binding d | 100.0 | |
| cd06357 | 360 | PBP1_AmiC Periplasmic binding domain of amidase (A | 100.0 | |
| cd06336 | 347 | PBP1_ABC_ligand_binding_like_3 Type I periplasmic | 100.0 | |
| cd06359 | 333 | PBP1_Nba_like Type I periplasmic binding component | 100.0 | |
| cd06328 | 333 | PBP1_SBP_like_2 Periplasmic solute-binding domain | 100.0 | |
| cd06360 | 336 | PBP1_alkylbenzenes_like Type I periplasmic binding | 100.0 | |
| cd06335 | 347 | PBP1_ABC_ligand_binding_like_2 Type I periplasmic | 100.0 | |
| cd06358 | 333 | PBP1_NHase Type I periplasmic-binding protein of t | 100.0 | |
| cd06356 | 334 | PBP1_Amide_Urea_BP_like Periplasmic component (Fmd | 100.0 | |
| cd06332 | 333 | PBP1_aromatic_compounds_like Type I periplasmic bi | 100.0 | |
| cd06334 | 351 | PBP1_ABC_ligand_binding_like_1 Type I periplasmic | 100.0 | |
| cd06337 | 357 | PBP1_ABC_ligand_binding_like_4 Type I periplasmic | 99.98 | |
| PF13433 | 363 | Peripla_BP_5: Periplasmic binding protein domain; | 99.98 | |
| cd06326 | 336 | PBP1_STKc_like Type I periplasmic binding domain o | 99.97 | |
| cd06269 | 298 | PBP1_glutamate_receptors_like Family C G-protein c | 99.97 | |
| cd06339 | 336 | PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin | 99.96 | |
| KOG1055 | 865 | consensus GABA-B ion channel receptor subunit GABA | 99.96 | |
| cd06341 | 341 | PBP1_ABC_ligand_binding_like_7 Type I periplasmic | 99.96 | |
| TIGR03863 | 347 | PQQ_ABC_bind ABC transporter, substrate binding pr | 99.96 | |
| cd04509 | 299 | PBP1_ABC_transporter_GCPR_C_like Family C of G-pro | 99.95 | |
| KOG1052 | 656 | consensus Glutamate-gated kainate-type ion channel | 99.95 | |
| cd06333 | 312 | PBP1_ABC-type_HAAT_like Type I periplasmic binding | 99.95 | |
| cd06268 | 298 | PBP1_ABC_transporter_LIVBP_like Periplasmic bindin | 99.93 | |
| cd06369 | 380 | PBP1_GC_C_enterotoxin_receptor Ligand-binding doma | 99.92 | |
| PF10613 | 65 | Lig_chan-Glu_bd: Ligated ion channel L-glutamate- | 99.83 | |
| cd01391 | 269 | Periplasmic_Binding_Protein_Type_1 Type 1 periplas | 99.63 | |
| PF04348 | 536 | LppC: LppC putative lipoprotein; InterPro: IPR0074 | 99.43 | |
| cd01537 | 264 | PBP1_Repressors_Sugar_Binding_like Ligand-binding | 98.83 | |
| cd06267 | 264 | PBP1_LacI_sugar_binding_like Ligand binding domain | 98.76 | |
| cd01536 | 267 | PBP1_ABC_sugar_binding_like Periplasmic sugar-bind | 98.76 | |
| COG2984 | 322 | ABC-type uncharacterized transport system, peripla | 98.72 | |
| COG3107 | 604 | LppC Putative lipoprotein [General function predic | 98.7 | |
| cd06320 | 275 | PBP1_allose_binding Periplasmic allose-binding dom | 98.66 | |
| cd06300 | 272 | PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi | 98.64 | |
| cd06325 | 281 | PBP1_ABC_uncharacterized_transporter Type I peripl | 98.6 | |
| PRK10797 | 302 | glutamate and aspartate transporter subunit; Provi | 98.45 | |
| PRK15437 | 259 | histidine ABC transporter substrate-binding protei | 98.41 | |
| cd06282 | 266 | PBP1_GntR_like_2 Ligand-binding domain of putative | 98.4 | |
| PF00497 | 225 | SBP_bac_3: Bacterial extracellular solute-binding | 98.38 | |
| cd06323 | 268 | PBP1_ribose_binding Periplasmic sugar-binding doma | 98.35 | |
| PRK15007 | 243 | putative ABC transporter arginine-biding protein; | 98.32 | |
| PRK15010 | 260 | ABC transporter lysine/arginine/ornithine binding | 98.32 | |
| PRK11917 | 259 | bifunctional adhesin/ABC transporter aspartate/glu | 98.31 | |
| cd06319 | 277 | PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b | 98.29 | |
| PF13407 | 257 | Peripla_BP_4: Periplasmic binding protein domain; | 98.28 | |
| PRK10653 | 295 | D-ribose transporter subunit RbsB; Provisional | 98.27 | |
| cd01545 | 270 | PBP1_SalR Ligand-binding domain of DNA transcripti | 98.26 | |
| cd06273 | 268 | PBP1_GntR_like_1 This group includes the ligand-bi | 98.24 | |
| cd06310 | 273 | PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi | 98.23 | |
| PRK09495 | 247 | glnH glutamine ABC transporter periplasmic protein | 98.22 | |
| cd06317 | 275 | PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi | 98.21 | |
| TIGR01096 | 250 | 3A0103s03R lysine-arginine-ornithine-binding perip | 98.2 | |
| cd06301 | 272 | PBP1_rhizopine_binding_like Periplasmic binding pr | 98.17 | |
| cd06309 | 273 | PBP1_YtfQ_like Periplasmic binding domain of ABC-t | 98.15 | |
| cd06312 | 271 | PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi | 98.14 | |
| PRK10936 | 343 | TMAO reductase system periplasmic protein TorT; Pr | 98.09 | |
| cd06289 | 268 | PBP1_MalI_like Ligand-binding domain of MalI, a tr | 98.06 | |
| PRK15395 | 330 | methyl-galactoside ABC transporter galactose-bindi | 98.05 | |
| cd06298 | 268 | PBP1_CcpA_like Ligand-binding domain of the catabo | 98.05 | |
| cd06305 | 273 | PBP1_methylthioribose_binding_like Methylthioribos | 98.05 | |
| COG1879 | 322 | RbsB ABC-type sugar transport system, periplasmic | 98.04 | |
| TIGR02995 | 275 | ectoine_ehuB ectoine/hydroxyectoine ABC transporte | 98.02 | |
| cd06271 | 268 | PBP1_AglR_RafR_like Ligand-binding domain of DNA t | 97.98 | |
| TIGR02285 | 268 | conserved hypothetical protein. Members of this fa | 97.96 | |
| PF00532 | 279 | Peripla_BP_1: Periplasmic binding proteins and sug | 97.96 | |
| PRK11260 | 266 | cystine transporter subunit; Provisional | 97.94 | |
| cd06284 | 267 | PBP1_LacI_like_6 Ligand-binding domain of an uncha | 97.93 | |
| PRK10859 | 482 | membrane-bound lytic transglycosylase F; Provision | 97.92 | |
| cd01539 | 303 | PBP1_GGBP Periplasmic glucose/galactose-binding pr | 97.9 | |
| cd06275 | 269 | PBP1_PurR Ligand-binding domain of purine represso | 97.88 | |
| cd06321 | 271 | PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b | 97.88 | |
| cd06303 | 280 | PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot | 97.88 | |
| cd06288 | 269 | PBP1_sucrose_transcription_regulator Ligand-bindin | 97.88 | |
| cd06311 | 274 | PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi | 97.86 | |
| cd06295 | 275 | PBP1_CelR Ligand binding domain of a transcription | 97.86 | |
| cd01575 | 268 | PBP1_GntR Ligand-binding domain of DNA transcripti | 97.84 | |
| TIGR03870 | 246 | ABC_MoxJ methanol oxidation system protein MoxJ. T | 97.83 | |
| cd06322 | 267 | PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b | 97.83 | |
| PRK09701 | 311 | D-allose transporter subunit; Provisional | 97.81 | |
| cd06270 | 268 | PBP1_GalS_like Ligand binding domain of DNA transc | 97.81 | |
| TIGR01481 | 329 | ccpA catabolite control protein A. Catabolite cont | 97.8 | |
| cd01542 | 259 | PBP1_TreR_like Ligand-binding domain of DNA transc | 97.8 | |
| cd06308 | 270 | PBP1_sensor_kinase_like Periplasmic binding domain | 97.78 | |
| cd06283 | 267 | PBP1_RegR_EndR_KdgR_like Ligand-binding domain of | 97.77 | |
| cd06294 | 270 | PBP1_ycjW_transcription_regulator_like Ligand-bind | 97.75 | |
| cd01574 | 264 | PBP1_LacI Ligand-binding domain of DNA transcripti | 97.73 | |
| cd06274 | 264 | PBP1_FruR Ligand binding domain of DNA transcripti | 97.73 | |
| cd06306 | 268 | PBP1_TorT-like TorT-like proteins, a periplasmic b | 97.72 | |
| cd06292 | 273 | PBP1_LacI_like_10 Ligand-binding domain of unchara | 97.7 | |
| cd06299 | 265 | PBP1_LacI_like_13 Ligand-binding domain of DNA-bin | 97.69 | |
| cd06293 | 269 | PBP1_LacI_like_11 Ligand-binding domain of unchara | 97.69 | |
| cd01540 | 289 | PBP1_arabinose_binding Periplasmic L-arabinose-bin | 97.68 | |
| PRK10355 | 330 | xylF D-xylose transporter subunit XylF; Provisiona | 97.67 | |
| cd06324 | 305 | PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b | 97.67 | |
| PRK10014 | 342 | DNA-binding transcriptional repressor MalI; Provis | 97.64 | |
| cd06285 | 265 | PBP1_LacI_like_7 Ligand-binding domain of uncharac | 97.64 | |
| cd06296 | 270 | PBP1_CatR_like Ligand-binding domain of a LacI-lik | 97.64 | |
| cd06278 | 266 | PBP1_LacI_like_2 Ligand-binding domain of uncharac | 97.63 | |
| cd06281 | 269 | PBP1_LacI_like_5 Ligand-binding domain of uncharac | 97.62 | |
| PRK10703 | 341 | DNA-binding transcriptional repressor PurR; Provis | 97.57 | |
| PRK15408 | 336 | autoinducer 2-binding protein lsrB; Provisional | 97.56 | |
| PF04392 | 294 | ABC_sub_bind: ABC transporter substrate binding pr | 97.56 | |
| PRK11303 | 328 | DNA-binding transcriptional regulator FruR; Provis | 97.56 | |
| cd06316 | 294 | PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi | 97.55 | |
| smart00062 | 219 | PBPb Bacterial periplasmic substrate-binding prote | 97.54 | |
| cd06290 | 265 | PBP1_LacI_like_9 Ligand-binding domain of uncharac | 97.51 | |
| PRK10423 | 327 | transcriptional repressor RbsR; Provisional | 97.48 | |
| cd06286 | 260 | PBP1_CcpB_like Ligand-binding domain of a novel tr | 97.46 | |
| cd06277 | 268 | PBP1_LacI_like_1 Ligand-binding domain of uncharac | 97.45 | |
| cd06313 | 272 | PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi | 97.45 | |
| COG1609 | 333 | PurR Transcriptional regulators [Transcription] | 97.44 | |
| cd01538 | 288 | PBP1_ABC_xylose_binding Periplasmic xylose-binding | 97.43 | |
| cd01541 | 273 | PBP1_AraR Ligand-binding domain of DNA transcripti | 97.42 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 97.41 | |
| PRK10727 | 343 | DNA-binding transcriptional regulator GalR; Provis | 97.41 | |
| cd06272 | 261 | PBP1_hexuronate_repressor_like Ligand-binding doma | 97.41 | |
| TIGR02955 | 295 | TMAO_TorT TMAO reductase system periplasmic protei | 97.39 | |
| COG0834 | 275 | HisJ ABC-type amino acid transport/signal transduc | 97.38 | |
| TIGR02417 | 327 | fruct_sucro_rep D-fructose-responsive transcriptio | 97.34 | |
| cd06297 | 269 | PBP1_LacI_like_12 Ligand-binding domain of unchara | 97.31 | |
| cd06280 | 263 | PBP1_LacI_like_4 Ligand-binding domain of uncharac | 97.3 | |
| cd06314 | 271 | PBP1_tmGBP Periplasmic sugar-binding domain of The | 97.27 | |
| cd06318 | 282 | PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi | 97.26 | |
| cd00134 | 218 | PBPb Bacterial periplasmic transport systems use m | 97.26 | |
| PRK09526 | 342 | lacI lac repressor; Reviewed | 97.25 | |
| cd06291 | 265 | PBP1_Qymf_like Ligand binding domain of the lacI-l | 97.23 | |
| cd06279 | 283 | PBP1_LacI_like_3 Ligand-binding domain of uncharac | 97.22 | |
| cd06307 | 275 | PBP1_uncharacterized_sugar_binding Periplasmic sug | 97.19 | |
| cd06302 | 298 | PBP1_LsrB_Quorum_Sensing Periplasmic binding domai | 97.18 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 97.11 | |
| cd06304 | 260 | PBP1_BmpA_like Periplasmic binding component of a | 97.08 | |
| PRK14987 | 331 | gluconate operon transcriptional regulator; Provis | 97.08 | |
| PRK10401 | 346 | DNA-binding transcriptional regulator GalS; Provis | 97.08 | |
| cd01543 | 265 | PBP1_XylR Ligand-binding domain of DNA transcripti | 97.05 | |
| PRK09492 | 315 | treR trehalose repressor; Provisional | 97.01 | |
| TIGR03871 | 232 | ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa | 97.01 | |
| PRK11041 | 309 | DNA-binding transcriptional regulator CytR; Provis | 96.94 | |
| cd06354 | 265 | PBP1_BmpA_PnrA_like Periplasmic binding domain of | 96.79 | |
| cd01544 | 270 | PBP1_GalR Ligand-binding domain of DNA transcripti | 96.56 | |
| TIGR02634 | 302 | xylF D-xylose ABC transporter, substrate-binding p | 96.46 | |
| TIGR02405 | 311 | trehalos_R_Ecol trehalose operon repressor, proteo | 96.33 | |
| COG1744 | 345 | Med Uncharacterized ABC-type transport system, per | 96.21 | |
| cd06353 | 258 | PBP1_BmpA_Med_like Periplasmic binding domain of t | 96.21 | |
| cd06315 | 280 | PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-bi | 95.86 | |
| TIGR02637 | 302 | RhaS rhamnose ABC transporter, rhamnose-binding pr | 95.6 | |
| PF12683 | 275 | DUF3798: Protein of unknown function (DUF3798); In | 94.11 | |
| TIGR02990 | 239 | ectoine_eutA ectoine utilization protein EutA. Mem | 94.0 | |
| PRK10339 | 327 | DNA-binding transcriptional repressor EbgR; Provis | 93.97 | |
| cd06287 | 269 | PBP1_LacI_like_8 Ligand-binding domain of uncharac | 93.55 | |
| COG3473 | 238 | Maleate cis-trans isomerase [Secondary metabolites | 93.28 | |
| cd06353 | 258 | PBP1_BmpA_Med_like Periplasmic binding domain of t | 92.68 | |
| TIGR00035 | 229 | asp_race aspartate racemase. | 91.18 | |
| PF02608 | 306 | Bmp: Basic membrane protein; InterPro: IPR003760 T | 90.37 | |
| PRK10200 | 230 | putative racemase; Provisional | 89.98 | |
| COG1464 | 268 | NlpA ABC-type metal ion transport system, periplas | 89.39 | |
| PF13377 | 160 | Peripla_BP_3: Periplasmic binding protein-like dom | 88.72 | |
| PF03808 | 172 | Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp | 88.29 | |
| cd06276 | 247 | PBP1_FucR_like Ligand-binding domain of a transcri | 87.24 | |
| PF02608 | 306 | Bmp: Basic membrane protein; InterPro: IPR003760 T | 86.84 | |
| COG1454 | 377 | EutG Alcohol dehydrogenase, class IV [Energy produ | 86.74 | |
| COG4213 | 341 | XylF ABC-type xylose transport system, periplasmic | 86.25 | |
| PRK09860 | 383 | putative alcohol dehydrogenase; Provisional | 85.93 | |
| cd06533 | 171 | Glyco_transf_WecG_TagA The glycosyltransferase Wec | 85.17 | |
| PRK11063 | 271 | metQ DL-methionine transporter substrate-binding s | 85.08 | |
| TIGR01098 | 254 | 3A0109s03R phosphate/phosphite/phosphonate ABC tra | 84.32 | |
| PRK15454 | 395 | ethanol dehydrogenase EutG; Provisional | 84.23 | |
| PF13685 | 250 | Fe-ADH_2: Iron-containing alcohol dehydrogenase; P | 83.44 | |
| COG1744 | 345 | Med Uncharacterized ABC-type transport system, per | 83.1 | |
| cd08192 | 370 | Fe-ADH7 Iron-containing alcohol dehydrogenases-lik | 83.02 | |
| cd08189 | 374 | Fe-ADH5 Iron-containing alcohol dehydrogenases-lik | 82.99 | |
| cd08190 | 414 | HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv | 82.42 | |
| PRK10624 | 382 | L-1,2-propanediol oxidoreductase; Provisional | 82.22 | |
| PF01177 | 216 | Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro | 81.54 | |
| cd08551 | 370 | Fe-ADH iron-containing alcohol dehydrogenases (Fe- | 81.39 |
| >KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-61 Score=451.07 Aligned_cols=453 Identities=15% Similarity=0.250 Sum_probs=368.1
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC----CCcEEEEEEec-CCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIRD-HNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~----~~~~l~~~~~d-~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
.+|.||.+||.+. .+...||++|+...|... ..+++.+++.. ...+++....++|+..+ .||.||+|....
T Consensus 25 ~tiqigglF~~n~---~qe~~Afr~~~~~~~~~~~~~~~pf~L~~~~d~~e~a~Sf~~tnafCsq~s-~Gv~Aifg~yd~ 100 (897)
T KOG1054|consen 25 NTIQIGGLFPRNT---DQEHSAFRFAVQLYNTNQNTTEKPFKLNPHVDNLESANSFAVTNAFCSQFS-RGVYAIFGFYDK 100 (897)
T ss_pred CceeeccccCCcc---hHHHHHHHHHHHHhhcCCCCCCCCcccccccchhhhhhhHHHHHHHHHHHh-hhHhhheecccc
Confidence 5899999999984 467789999999888754 13556555542 33788899999999998 699999999999
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.....+.++|+.+++|+|+++.. .....++++++.|+ +..++++++.||+|.+++++|+.+. | ...++
T Consensus 101 ks~~~ltsfc~aLh~~~vtpsfp------~~~~~~Fviq~RP~---l~~al~s~i~hy~W~~fv~lyD~~r-g--~s~Lq 168 (897)
T KOG1054|consen 101 KSVNTLTSFCGALHVSFVTPSFP------TDGDNQFVIQMRPA---LKGALLSLIDHYKWEKFVYLYDTDR-G--LSILQ 168 (897)
T ss_pred cchhhhhhhccceeeeeecccCC------cCCCceEEEEeCch---HHHHHHHHHHhcccceEEEEEcccc-h--HHHHH
Confidence 99999999999999999998875 12344789999998 8899999999999999999998765 5 66788
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+-+.+.+++ ..|.....-.. . +...++.+++.+.....+.|++ +|..+....++.++-+.+-..++|||++.
T Consensus 169 ai~~~a~~~n-w~VtA~~v~~~-~----d~~~yr~~f~~l~~r~e~rv~i-Dce~~~~~~il~q~i~~~k~~~~YHYvla 241 (897)
T KOG1054|consen 169 AIMEAAAQNN-WQVTAINVGNI-N----DVKEYRMLFEMLDRRQENRVLI-DCESERRNRILLQVIELGKHVKGYHYVLA 241 (897)
T ss_pred HHHHHHHhcC-ceEEEEEcCCc-c----cHHHHHHHHHHHhccccceEEE-EcccHHHHHHHHHHHHHhhhccceEEEEe
Confidence 8888888888 88887653332 2 4456999999999888888999 99999999999999999988899999998
Q ss_pred ccchhhcccCChhHHhhcCc---eEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHH
Q 008863 268 NTVANALDSLNTTVISSMEG---TLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (550)
+..... .+...+.+| +.+|... +.++|..++|+++|++.-...++...+.++...++++|||+.++++|++
T Consensus 242 Nl~f~d-----~dl~~f~~g~aNitgFqiv-n~~~~~~~k~~~~~~~l~~~~~~g~~~~~~k~tsAlthDailV~~eaf~ 315 (897)
T KOG1054|consen 242 NLGFTD-----IDLERFQHGGANITGFQIV-NKNNPMVKKFIQRWKELDEREYPGASNDPIKYTSALTHDAILVMAEAFR 315 (897)
T ss_pred eCCCch-----hhHHHHhcCCcceeEEEEe-cCCChHHHHHHHHHhhhcccccCCCCCCCcchhhhhhhhHHHHHHHHHH
Confidence 863322 223344443 4566654 4445899999999987766666666667788899999999999999999
Q ss_pred hhccC--------------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCC
Q 008863 345 RLNYN--------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPN 404 (550)
Q Consensus 345 ~~~~~--------------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~ 404 (550)
.+... |..|..+.++++++.++|+||+|+||..|.|.|++.+|++++.++.+++|.|+..
T Consensus 316 ~~~~q~~~~~rRG~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~~i~elk~~~~rk~~~W~e~ 395 (897)
T KOG1054|consen 316 SLRRQRIDISRRGNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTIDIVELKSNGSRKVGYWNEG 395 (897)
T ss_pred HHHHhhhchhccCCCccccCCCCCchhcchhHHHHHHheeecccccceeecccCccccceEEEEEeccCCcceeeeeccc
Confidence 87542 6788999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcCCcCCCccccCCCCccccCCCCCCCCCCccccCCCCCCeEecccCcccccccEEEecCCCCCCCCCCC
Q 008863 405 FGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKN 484 (550)
Q Consensus 405 ~g~~~~~~~~~~~~~~~~~~~~~~~~~i~wp~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~ 484 (550)
.++....+.... ..+. . . .++++++++| .++ .||||.|++.+. ++ ||
T Consensus 396 ~~fv~~~t~a~~-------~~d~-~---------~-~~n~tvvvtt-----iL~-------spyvm~kkn~~~-~e--gn 442 (897)
T KOG1054|consen 396 EGFVPGSTVAQS-------RNDQ-A---------S-KENRTVVVTT-----ILE-------SPYVMLKKNHEQ-LE--GN 442 (897)
T ss_pred Cceeeccccccc-------cccc-c---------c-cccceEEEEE-----ecC-------CchhHHHhhHHH-hc--CC
Confidence 998766543210 0110 0 1 4567777777 333 579999998632 33 79
Q ss_pred cccccchHHHHHHHHHhCCCCCCeEEEec--------CCC-hHHHHHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 485 LRYDGFSIELFRLVVDHLNYDLPYEFVPH--------DGV-YDDLINGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 485 ~~~~GfciDll~~la~~l~f~~~~~~~~~--------~g~-w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
++||||||||+.+||++++++|+..++.+ ||+ ||||||||++|+||+||+|||||.+||||+.
T Consensus 443 ~ryEGyCvdLa~~iAkhi~~~Y~l~iv~dgkyGardaD~k~WnGMvGeLv~grAdiavApLTIt~~REeviD 514 (897)
T KOG1054|consen 443 ERYEGYCVDLAAEIAKHIGIKYKLFIVGDGKYGARDADTKIWNGMVGELVYGRADIAVAPLTITLVREEVID 514 (897)
T ss_pred cccceeHHHHHHHHHHhcCceEEEEEecCCcccccCCCcccccchhHHHhcCccceEEeeeeeehhhhhhhc
Confidence 99999999999999999999966556544 566 9999999999999999999999999999975
|
|
| >KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-52 Score=393.78 Aligned_cols=438 Identities=19% Similarity=0.295 Sum_probs=339.3
Q ss_pred CCCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEec--CCCCHHHHHHHHHHhhhcCCeEEEEc-C-CC
Q 008863 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD--HNRDPFQAATAAQELINKEKVKVIAG-M-ET 106 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d--~~~~~~~a~~~~~~li~~~~v~aiiG-~-~~ 106 (550)
.+++++||+++... ..++-|.-++.++|++....++.+.... ...++......+|+.+-...|.+|+- + .+
T Consensus 32 np~t~nig~Vlst~-----~~ee~F~~t~~hln~~~~s~k~~~~aksv~~d~n~i~t~~~VC~~li~~~vyav~vSh~~T 106 (993)
T KOG4440|consen 32 NPKTVNIGAVLSTR-----KHEEMFRETVNHLNKRHGSWKIQLNAKSVTHDPNAIQTALSVCEDLISSQVYAVLVSHPPT 106 (993)
T ss_pred Cccceeeeeeeech-----hHHHHHHHHHHHhhccccceEEEEccccccCCCcHHHHHHHHHHHHHhhheeEEEecCCCC
Confidence 44799999999654 6678899999999988655666654332 44566666666665443467777763 2 22
Q ss_pred hH---HHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCc
Q 008863 107 WE---ETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (550)
Q Consensus 107 s~---~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~ 182 (550)
|. ...++...++-+.||++..... +.. ++++-++.|+|+.|++.+++....++|.+|.|++|.++.++|.-|
T Consensus 107 s~d~f~p~~vSYT~gFY~iPV~G~~~R--da~fSdKnIh~sFlRtvpPyshqa~VwleMl~~~~y~~vi~l~s~d~~g-- 182 (993)
T KOG4440|consen 107 SNDHFTPTPVSYTAGFYRIPVLGLTTR--DAIFSDKNIHLSFLRTVPPYSHQASVWLEMLRVYSYNHVILLVSDDHEG-- 182 (993)
T ss_pred CCcccccccceeeccceeeeeeeeeeh--hhhhccCceeeeEeecCCCccchhHHHHHHHHHhhcceEEEEEcccccc--
Confidence 22 2334666788899999999887 666 678889999999999999999999999999999999999998777
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCE
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~ 262 (550)
+.....++..+++.. -++.....+.+.. .++++.|-++|...+|++++ ..+.+++..+++.|..++|+|++|
T Consensus 183 ra~~~r~qt~~e~~~-~~~e~v~~f~p~~------~~~t~~l~~~k~~~~rv~~~-~as~dDA~~ifr~Ag~lnmTG~G~ 254 (993)
T KOG4440|consen 183 RAAQKRLQTLLEERE-SKAEKVLQFDPGT------KNVTALLMEAKELEARVIIL-SASEDDAATIFRAAGMLNMTGSGY 254 (993)
T ss_pred hhHHhHHHHHHHHHh-hhhhhheecCccc------chHHHHHhhhhhhhheeEEe-ecccchHHHHHHhhhhhcccCceE
Confidence 777677777777655 5555556666643 78999999999999999999 999999999999999999999999
Q ss_pred EEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHH
Q 008863 263 VWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEA 342 (550)
Q Consensus 263 ~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~A 342 (550)
+||++..-.+. ....+|+++++..... ...+..-|+|.+++.|
T Consensus 255 VWiV~E~a~~~--------nn~PdG~LGlqL~~~~-----------------------------~~~~hirDsv~vlasA 297 (993)
T KOG4440|consen 255 VWIVGERAISG--------NNLPDGILGLQLINGK-----------------------------NESAHIRDSVGVLASA 297 (993)
T ss_pred EEEEecccccc--------CCCCCceeeeEeecCc-----------------------------cccceehhhHHHHHHH
Confidence 99998764422 1346788888763221 1245678999999999
Q ss_pred HHhhccC----------------CCCHHHHHHHHHhCcc-cccceeEEEeCCCCCCCCceEEEEee-CCeeeEEEEEeCC
Q 008863 343 IGRLNYN----------------ISSPEMLLRQMLSSDF-SGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLPN 404 (550)
Q Consensus 343 l~~~~~~----------------~~~~~~l~~~l~~~~~-~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~~ 404 (550)
++++... |..+..+.+.+...++ .|.||++.||++|+|....|+|+|+. +...+.+|.|+..
T Consensus 298 v~e~~~~e~I~~~P~~c~d~~~~w~~g~~l~~~l~s~~~~~g~TgrV~Fnd~gdRi~a~YdiiN~hq~rk~Vg~~~yd~~ 377 (993)
T KOG4440|consen 298 VHELLEKENITDPPRGCVDNTNIWKTGPLLKRVLMSSKYADGVTGRVEFNDDGDRIFANYDIINLHQNRKLVGVGIYDGT 377 (993)
T ss_pred HHHHHhhccCCCCCCcccCccchhcccHHHHHHHhhhcccCCcceeEEEcCCCceeeccceeEehhhhhhhhhhccccce
Confidence 9998653 6788889888887555 79999999999999999999999994 5555656665531
Q ss_pred CCCccccCCCCcCCcCCCccccCCCCccccCCCCCCCCCCccccCCCCCCeEecccCcccccccEEEecCCCC-----C-
Q 008863 405 FGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLN-----G- 478 (550)
Q Consensus 405 ~g~~~~~~~~~~~~~~~~~~~~~~~~~i~wp~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~pfv~~~~~~~~-----~- 478 (550)
.- ...++.|+|||+.+ .+|+++.+|++-|.++|.. +|||..++.... +
T Consensus 378 r~-------------------~~nd~~IiWpGg~~-~KP~gi~~pthLrivTi~~------~PFVYv~p~~sd~~c~eef 431 (993)
T KOG4440|consen 378 RV-------------------IPNDRKIIWPGGET-EKPRGIQMPTHLRIVTIHQ------EPFVYVKPTLSDGTCKEEF 431 (993)
T ss_pred ee-------------------ccCCceeecCCCCc-CCCccccccceeEEEEecc------CCeEEEecCCCCcchhhhc
Confidence 11 12235699999999 9999999999666666654 689988731110 0
Q ss_pred ----------------------CCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec----------------CCChHHH
Q 008863 479 ----------------------NSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH----------------DGVYDDL 520 (550)
Q Consensus 479 ----------------------~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~----------------~g~w~Gm 520 (550)
+...-..||.|||||||-+|++.++|+|..-++++ ..+||||
T Consensus 432 ~~~~d~~~k~~c~gpn~s~p~s~~~t~~fCC~G~cIDLLi~Ls~~~Nftyd~~l~~dg~fg~~~~vnnsseT~~kew~G~ 511 (993)
T KOG4440|consen 432 TVNGDPVKKVICTGPNDSSPGSPRHTVPFCCYGFCIDLLIKLSRTMNFTYDVHLVADGKFGTQERVNNSSETNKKEWNGM 511 (993)
T ss_pred cccCCcccceeecCCCCCCCCCcccCcchhhhHHHHHHHHHHHHhhcceEEEEEeecccccceeeeecccccccceehhh
Confidence 00002569999999999999999999954445444 1479999
Q ss_pred HHhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 521 INGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 521 i~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
||||+.++|||+|+|+|||+||++.+..
T Consensus 512 iGEL~~~~ADMivaplTINpERa~yieF 539 (993)
T KOG4440|consen 512 IGELLSGQADMIVAPLTINPERAQYIEF 539 (993)
T ss_pred hhhhhCCccceEeeceeeChhhhhheec
Confidence 9999999999999999999999998764
|
|
| >cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=370.63 Aligned_cols=342 Identities=15% Similarity=0.276 Sum_probs=289.4
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||+||+.+. ...+.||++|++++|.+. +|...+. -+..|++.+.+.+|++++ +||.|||||.++.++..++
T Consensus 1 ~iG~if~~~~---~~~~~af~~av~~~N~~~---~l~~~~~~~~~~dsf~~~~~~C~~~~-~gV~AI~Gp~s~~~a~~v~ 73 (364)
T cd06390 1 QIGGLFPNQQ---SQEHAAFRFALSQLTEPP---KLLPQIDIVNISDSFEMTYTFCSQFS-KGVYAIFGFYDRKTVNMLT 73 (364)
T ss_pred CCceeeCCCC---hHHHHHHHHHHHHhccCc---ccccceEEeccccHHHHHHHHHHHhh-cCceEEEccCChhHHHHHH
Confidence 4899998763 467899999999999863 5544444 456799999999999998 6999999999999999999
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
++|+..+||+|++++. .. ...+|++++.|+ +.+|+++++++|+|++|++||+++ || ...++.+.+.+.
T Consensus 74 sic~~~~vP~i~~~~~----~~--~~~~~~i~~~P~---~~~Ai~diI~~~~W~~v~iIYd~d-~g--~~~lq~l~~~~~ 141 (364)
T cd06390 74 SFCGALHVCFITPSFP----VD--TSNQFVLQLRPE---LQDALISVIEHYKWQKFVYIYDAD-RG--LSVLQKVLDTAA 141 (364)
T ss_pred HhhcCCCCCceecCCC----CC--CCCceEEEeChh---HHHHHHHHHHHcCCcEEEEEEeCC-cc--HHHHHHHHHhhh
Confidence 9999999999997543 22 233679999998 899999999999999999999755 88 999999999999
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhc
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANAL 274 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 274 (550)
+.+ ++|......+. ...+++..|+++++.++++||+ +|+.+.+..+|+++.+.+|++.+|+||+++......
T Consensus 142 ~~~-~~I~~~~~~~~------~~~d~~~~L~~ik~~~~rvIVl-~~~~~~~~~~L~~a~~~~~~~~gy~wI~t~l~~~~~ 213 (364)
T cd06390 142 EKN-WQVTAVNILTT------TEEGYRKLFQDLDKKKERLIVV-DCESERLNAILNQIIKLEKNGIGYHYILANLGFMDI 213 (364)
T ss_pred ccC-ceeeEEEeecC------ChHHHHHHHHhccccCCeEEEE-ECCHHHHHHHHHHHHHhhccCCceEEEecCCCcccc
Confidence 999 99987665543 3468999999999999999999 999999999999999999989999999998433222
Q ss_pred ccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc-------
Q 008863 275 DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN------- 347 (550)
Q Consensus 275 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~------- 347 (550)
+. ........|+++++.+.+.. +.+++|..+|++.....++......+..+++++||||+++|+|++++.
T Consensus 214 ~~--~~~~~~~~nitg~r~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~yDaV~~~A~A~~~l~~~~~~~~ 290 (364)
T cd06390 214 DL--TKFRESGANVTGFQLVNYTD-TTVSRIMQQWKNFDARDLPRVDWKRPKYTSALTYDGVRVMAEAFQNLRKQRIDIS 290 (364)
T ss_pred cH--HHHhcCCcCceEEEEecCCC-HHHHHHHHHHHhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 22 23345677899999987655 889999999988766555544444678899999999999999999642
Q ss_pred ------cC-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCC
Q 008863 348 ------YN-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGF 407 (550)
Q Consensus 348 ------~~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~ 407 (550)
.| |..|..|.++|++++|+|+||+|+|+++|+|.++.|+|+++.+.++++||+|++..|+
T Consensus 291 ~~~~~~~C~~~~~~~w~~G~~l~~~i~~~~f~GlTG~i~F~~~G~r~~~~~~I~~~~~~g~~~vG~W~~~~g~ 363 (364)
T cd06390 291 RRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDEKL 363 (364)
T ss_pred cCCCCCCCCCCCCCCCccHHHHHHHHHhhcccccccceeeCCCCCcccceEEEEEecCCcceEEEEECCCCCc
Confidence 12 6779999999999999999999999999999999999999999999999999998775
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). |
| >cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=366.69 Aligned_cols=343 Identities=17% Similarity=0.270 Sum_probs=288.2
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCC---C-CcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDS---R-NHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~-~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
.||+||+.+. .+.+.||++|++.+|.+. + ..+|.+.+. -...|++.+.+.+|++++ .||.||+||.++.++
T Consensus 1 ~iG~iF~~~~---~~~~~aF~~Av~~~N~~~~~~~~~~~l~~~i~~~~~~dsf~~~~~~C~l~~-~GV~AIfGp~~~~s~ 76 (372)
T cd06387 1 SIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFS-RGVYAIFGFYDQMSM 76 (372)
T ss_pred CcceeecCCc---HHHHHHHHHHHHHhcccccccccCeEEEEeeEEecCCChHHHHHHHHHHhh-cccEEEEecCCHhHH
Confidence 3899998664 467899999999999875 2 257777555 346899999999999998 699999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
..++++|+..+||+|.+... .+ ...++.+++.|+ +.+|+++++++|+|++|++|| |+++| ...++.+.
T Consensus 77 ~~v~s~c~~~~iP~i~~~~~--~~----~~~~~~l~l~P~---l~~Ai~diI~~~~Wr~~~~iY-d~d~g--l~~Lq~L~ 144 (372)
T cd06387 77 NTLTSFCGALHTSFITPSFP--TD----ADVQFVIQMRPA---LKGAILSLLAHYKWEKFVYLY-DTERG--FSILQAIM 144 (372)
T ss_pred HHHHHhhccccCCeeeeCCC--CC----CCCceEEEEChh---HHHHHHHHHHhcCCCEEEEEe-cCchh--HHHHHHHH
Confidence 99999999999999998654 11 344788999998 799999999999999999999 45667 77888888
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
+.+...+ ..|......+. . ...+++..++++++.+.++||+ +|+++.+..+|++|.++||++++|+||+++..
T Consensus 145 ~~~~~~~-~~V~~~~v~~~-~----~~~~~~~~l~el~~~~~r~iIl-d~s~~~~~~il~~a~e~gM~~~~y~~ilt~ld 217 (372)
T cd06387 145 EAAVQNN-WQVTARSVGNI-K----DVQEFRRIIEEMDRRQEKRYLI-DCEVERINTILEQVVILGKHSRGYHYMLANLG 217 (372)
T ss_pred HhhccCC-ceEEEEEeccC-C----chHHHHHHHHHhccccceEEEE-ECCHHHHHHHHHHHHHcCccccceEEEEecCC
Confidence 8888888 88766543332 1 3468899999999999999999 99999999999999999999999999999864
Q ss_pred hhhcccCChhHHhhcCc---eEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 271 ANALDSLNTTVISSMEG---TLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 271 ~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
....+ ..++..| +++++.+.+.. +.+++|.++|++.....++.....++..+++++||||+++|+|++++.
T Consensus 218 ~~~~d-----l~~~~~g~~NItg~rl~~~~~-~~~~~f~~~w~~~~~~~~~~~~~~~l~~~~al~yDaV~~~A~A~~~l~ 291 (372)
T cd06387 218 FTDIS-----LERVMHGGANITGFQIVNNEN-PMVQQFLQRWVRLDEREFPEAKNSPLKYTSALTHDAILVIAEAFRYLR 291 (372)
T ss_pred ccccc-----HHHhccCCcceeEEEEecCCC-chHHHHHHHHHhCCcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 43333 2344555 88999876655 889999999988776666554444567899999999999999999652
Q ss_pred -------------cC-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCC
Q 008863 348 -------------YN-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGF 407 (550)
Q Consensus 348 -------------~~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~ 407 (550)
.| |..|..|.++|++++|+|+||+++|+++|+|.++.|+|+++.+.++++||+|++..|+
T Consensus 292 ~~~~~~~~~~~~~~C~~~~~~~W~~G~~l~~~ik~v~~~GLTG~i~F~~~G~R~~~~ldIinl~~~g~~kIG~W~~~~g~ 371 (372)
T cd06387 292 RQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKPSGSRKAGYWNEYERF 371 (372)
T ss_pred hcCCCcccCCCCCCcCCCCCCCccchHHHHHHHHhcccCCCccceeeCCCCCcccceEEEEEecCCCceeEEEECCCCCc
Confidence 22 6789999999999999999999999999999999999999999999999999998875
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). |
| >cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=365.92 Aligned_cols=348 Identities=16% Similarity=0.270 Sum_probs=272.5
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEE-ecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQI-RDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~-~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.||+||+..+ ...+.||++|++++|.+. ++.+|.+.+ +++.+|++.+...+|++++ ++|.|||||.++..+.
T Consensus 1 ~iG~if~~~~---~~~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~~-~gV~AI~Gp~s~~~a~ 76 (400)
T cd06392 1 HIGAIFEENA---AKDDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLMT-QGILALVTSTGCASAN 76 (400)
T ss_pred CeeeccCCCc---hHHHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHHh-cCeEEEECCCchhHHH
Confidence 4899999764 457899999999999776 678999999 7999999999999999996 6999999999999999
Q ss_pred HHHHhhccCCccEEeccCCC---------CCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCc
Q 008863 112 VVAEIASRVQVPILSFAAPA---------VTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~---------~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~ 182 (550)
.++++|+.++||+|++++.+ .+|... ..+|.+.+.|+ ..+.+|+++++.+|+|++|++|| |+++|
T Consensus 77 ~v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~~--~~~~~~~lrp~-~~~~~Ai~dlV~~~~W~~v~~iY-D~d~g-- 150 (400)
T cd06392 77 ALQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSPE--GEEYTLAARPP-VRLNDVMLKLVTELRWQKFIVFY-DSEYD-- 150 (400)
T ss_pred HHHHHhccCcCCcEeecccccccccccccCCCCcC--cCceeEEecCc-hHHHHHHHHHHHhCCCcEEEEEE-ECccc--
Confidence 99999999999999986520 023222 33566777787 67889999999999999999999 67788
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC-------CeEEEEEcCCHHHHHHHHHHHHHc
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-------SRVFIVLQASLDMTIHLFTEANRM 255 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~-------~~~ii~~~~~~~~~~~il~~a~~~ 255 (550)
...++.+.+.+.+.+ .+|.... +... ...++.+.++.++... -++||+ +|+++.+..++++|.++
T Consensus 151 l~~lq~L~~~~~~~~-~~I~~~~-v~~~-----~~~~~~~~l~~~~~~~L~~~~~~~r~iVv-~~s~~~~~~il~qA~~l 222 (400)
T cd06392 151 IRGLQSFLDQASRLG-LDVSLQK-VDRN-----ISRVFTNLFTTMKTEELNRYRDTLRRAIL-LLSPRGAQTFINEAVET 222 (400)
T ss_pred HHHHHHHHHHHhhcC-ceEEEEE-cccC-----cchhhhhHHHHHHHhhhhhccccceEEEE-EcCcHHHHHHHHHHHHh
Confidence 888999999999988 8887554 2211 0113444444443333 488888 99999999999999999
Q ss_pred CCCCCCEEEEEeccchhhcccCChhHHhhcCceEE----EEeecCCCChhHHHHH----HHHHHHhhccCCCCCCCCCCc
Q 008863 256 GLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLG----IKSYYSDDSSPYKEFS----ALFRRNFTSEYPEEDHFHPSI 327 (550)
Q Consensus 256 g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~~ 327 (550)
||++.+|+||+++......+ ..++.+|.++ ++.+.+.. .....|. .+|++....... .....+..
T Consensus 223 gM~~~~y~wI~t~~~~~~~d-----l~~~~~g~~~niT~~r~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~-~~~~~l~~ 295 (400)
T cd06392 223 NLASKDSHWVFVNEEISDTE-----ILELVHSALGRMTVIRQIFPLS-KDNNQRCIRNNHRISSLLCDPQE-GYLQMLQV 295 (400)
T ss_pred CcccCCeEEEEecCCccccc-----HHHHhcccccceeeEEEecCCc-HHHHHHHHHHHHHHHhhhccccc-ccccccch
Confidence 99999999999998665433 3355666654 77665543 3344443 444332221100 11124678
Q ss_pred hhhHHhHHHHHHHHHHHhhc-----------cC-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEE
Q 008863 328 HALRAHDSIKIITEAIGRLN-----------YN-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVN 389 (550)
Q Consensus 328 ~~~~~yDav~~~a~Al~~~~-----------~~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~ 389 (550)
+++++||||+++|+|++.+. .| |..|..|+++|++++|+|+||+|+|+++|+|.++.|+|++
T Consensus 296 ~aalayDaV~~~A~Al~~ll~~~~~~~~~~l~C~~~~~~~w~~G~~ll~~ik~v~f~GLTG~I~F~~~G~r~~~~ldIi~ 375 (400)
T cd06392 296 SNLYLYDSVLMLANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLETIKKGHITGLTGVMEFKEDGANPHVQFEILG 375 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCCCCCChHHHHHHHHhCCCccCccceeECCCCCCcCCceEEEe
Confidence 99999999999999999742 12 6789999999999999999999999999999999999999
Q ss_pred ee-----CCeeeEEEEEeCCCCCc
Q 008863 390 VV-----GKKYKELDFWLPNFGFS 408 (550)
Q Consensus 390 ~~-----~~~~~~vG~w~~~~g~~ 408 (550)
++ +.++++||+|++..|++
T Consensus 376 l~~~~~~g~g~~~iG~W~~~~gl~ 399 (400)
T cd06392 376 TSYSETFGKDVRRLATWDSEKGLN 399 (400)
T ss_pred ccccccCCCCceEeEEecCCCCCC
Confidence 65 56699999999988864
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel |
| >KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=361.00 Aligned_cols=396 Identities=16% Similarity=0.302 Sum_probs=292.2
Q ss_pred cCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH---HHHHHHHhhccCCccEEeccCCCCCCc--ccCCCCCeEEEEecCc
Q 008863 77 DHNRDPFQAATAAQELINKEKVKVIAGMETWE---ETAVVAEIASRVQVPILSFAAPAVTPL--SMSRRWPYLIRMASND 151 (550)
Q Consensus 77 d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~---~~~~v~~~~~~~~iP~is~~~~~~~~~--~~~~~~~~~~~~~p~~ 151 (550)
-...||...+..+|.+++..+|.+|+-...+. .+..+--+....+||+|+.... ... ..+.....++++.|+.
T Consensus 80 ~N~tdPkSll~~vC~lvs~~~V~glvf~d~s~~~avaq~LDfiSs~t~iPIisi~gg--~a~~~~~kd~gs~flQlg~Si 157 (1258)
T KOG1053|consen 80 MNTTDPKSLLTQVCDLVSGARVHGLVFEDDSDTEAVAQILDFISSQTHIPIISIHGG--AAMVLTPKDLGSTFLQLGPSI 157 (1258)
T ss_pred cCCCCHHHHHHHHHhhhhhcceeEEEeecCccchHHHHHHHHHHHhcCCcEEEEecC--ccceecCCCCcceEEEeCCcH
Confidence 34589999999999999999999887544333 2223334667899999999877 333 3444556899999999
Q ss_pred HHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCC-CeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC
Q 008863 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVS-SSEIQSRLVLPPISSISDPKEAVRGELKKVQDK 230 (550)
Q Consensus 152 ~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g-~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~ 230 (550)
++|++++.++|+.|+|..|++|....+. ++.+...++...+..- ++++.......+.. ++.......++++.
T Consensus 158 eqqa~Vml~iL~~ydW~~Fs~vtt~~pg--~~~f~~~ir~~~d~s~vgwe~i~v~~l~~s~-----~d~~a~~q~qLkki 230 (1258)
T KOG1053|consen 158 EQQAQVMLKILEEYDWYNFSLVTTQFPG--NRTFVSLIRQTNDNSHVGWEMINVLTLDPST-----DDLLAKLQAQLKKI 230 (1258)
T ss_pred HHHHHHHHHHHHHcCcceeEEEEeecCc--hHHHHHHHHHhhhhccccceeeeeeecCCCC-----CchHHHHHHHHHhc
Confidence 9999999999999999999999998873 4888888888777643 03444444444332 12233344456666
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHH
Q 008863 231 QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFR 310 (550)
Q Consensus 231 ~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~ 310 (550)
++.+|++ .|+.+++..|+..|.++|+++++|.||++...... + +....+.-|.+.+... .|+
T Consensus 231 ~a~Vill-yC~~eea~~IF~~A~q~Gl~g~~y~Wi~pqlv~g~-~---~~pa~~P~GLisv~~~-------------~w~ 292 (1258)
T KOG1053|consen 231 QAPVILL-YCSREEAERIFEEAEQAGLTGPGYVWIVPQLVEGL-E---PRPAEFPLGLISVSYD-------------TWR 292 (1258)
T ss_pred CCcEEEE-EecHHHHHHHHHHHHhcCCcCCceEEEeehhccCC-C---CCCccCccceeeeecc-------------chh
Confidence 7899999 99999999999999999999999999997665432 1 1112445566654421 111
Q ss_pred HHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccC------------------CCCHHHHHHHHHhCcccccceeE
Q 008863 311 RNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN------------------ISSPEMLLRQMLSSDFSGLSGKI 372 (550)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~------------------~~~~~~l~~~l~~~~~~G~tG~i 372 (550)
. ...+.+-|++-+++.|...+... ...+..+..+|.++.|+| +.+
T Consensus 293 ~---------------~l~~rVrdgvaiva~aa~s~~~~~~~lp~~~~~C~~~~~~~~~~~~~l~r~l~NvT~~g--~~l 355 (1258)
T KOG1053|consen 293 Y---------------SLEARVRDGVAIVARAASSMLRIHGFLPEPKMDCREQEETRLTSGETLHRFLANVTWDG--RDL 355 (1258)
T ss_pred h---------------hHHHHHhhhHHHHHHHHHHHHhhcccCCCcccccccccCccccchhhhhhhhheeeecc--cce
Confidence 1 22456789999999998877542 236788999999999998 889
Q ss_pred EEeCCCCCCCCceEEEEee-CCeeeEEEEEeCCCCCccccCCCCcCCcCCCccccCCCCccccCCCCCCCCCCccccCCC
Q 008863 373 RFKDGELLNADTLRIVNVV-GKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSN 451 (550)
Q Consensus 373 ~f~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~wp~~~~~~~p~~~~~~~~ 451 (550)
+|+++|...+++.-++.+. +..|.+||.|.... +.+. -.+||.-. +....++.
T Consensus 356 sf~~~g~~v~p~lvvI~l~~~r~We~VG~We~~~-L~M~--------------------y~vWPr~~----~~~q~~~d- 409 (1258)
T KOG1053|consen 356 SFNEDGYLVHPNLVVIDLNRDRTWERVGSWENGT-LVMK--------------------YPVWPRYH----KFLQPVPD- 409 (1258)
T ss_pred eecCCceeeccceEEEecCCCcchheeceecCCe-EEEe--------------------cccccccc----CccCCCCC-
Confidence 9999998888888877664 57899999998622 1111 16788321 22222332
Q ss_pred CCCeEecccCcccccccEEEec-CCCCC--------------------CCC-C-CCcccccchHHHHHHHHHhCCCCCCe
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKD-DPLNG--------------------NSN-D-KNLRYDGFSIELFRLVVDHLNYDLPY 508 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~-~~~~~--------------------~~~-~-~~~~~~GfciDll~~la~~l~f~~~~ 508 (550)
..||+|++-+| +|||..++ |+.++ .+. + -..||+|||||+|++||+.++|+ |
T Consensus 410 ~~HL~VvTLeE---~PFVive~vDP~t~~C~~ntvpc~s~~~~t~ss~~~~~~tvKkCCkGfCIDiLkKlA~~v~Ft--Y 484 (1258)
T KOG1053|consen 410 KLHLTVVTLEE---RPFVIVEDVDPLTQTCVRNTVPCRSQLNSTFSSGDEANRTVKKCCKGFCIDILKKLARDVKFT--Y 484 (1258)
T ss_pred cceeEEEEecc---CCeEEEecCCCCcCcCCCCCCcchhhhhhccCCCccCCchHHhhhhhhhHHHHHHHHhhcCcc--e
Confidence 45888888767 89998875 22222 000 0 15699999999999999999999 8
Q ss_pred EEEec---------CCChHHHHHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 509 EFVPH---------DGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 509 ~~~~~---------~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
+|+.| ||.||||||||++++|||||++||||+||.+||.
T Consensus 485 DLYlVtnGKhGkk~ng~WnGmIGev~~~rA~MAVgSltINeeRSevVD 532 (1258)
T KOG1053|consen 485 DLYLVTNGKHGKKINGVWNGMIGEVVYQRADMAVGSLTINEERSEVVD 532 (1258)
T ss_pred EEEEecCCcccceecCcchhhHHHHHhhhhheeeeeeEechhhhcccc
Confidence 88877 6899999999999999999999999999999985
|
|
| >cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=374.52 Aligned_cols=361 Identities=19% Similarity=0.281 Sum_probs=299.4
Q ss_pred cEEEEEEEecCC-------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhc--
Q 008863 34 VTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINK-- 95 (550)
Q Consensus 34 ~i~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~-- 95 (550)
++.||++||.+. ..|.....|+++|+++||+++ +|++|+++++|+++++..+++.+.+++.+
T Consensus 2 d~~igglfp~h~~~~~~~~c~~~~~~~G~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~a~~~a~~li~~~~ 81 (452)
T cd06362 2 DIILGGLFPVHSKGTGGEPCGEIKEQRGIQRLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALEQSLEFVRASL 81 (452)
T ss_pred CeEEEEEEecccCCCCCCCCcCccccchHHHHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCCchHHHHHHHHHHhhhh
Confidence 589999999882 367778999999999999998 69999999999999999999999888853
Q ss_pred --------------------CCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHh
Q 008863 96 --------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQ 154 (550)
Q Consensus 96 --------------------~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~ 154 (550)
++|.+||||.+|..+.++++++..+++|+|+++++ ++.+ ++..|||+||+.|++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~aviG~~~S~~~~av~~~~~~~~ip~Is~~st--s~~ls~~~~~~~~fR~~p~d~~~ 159 (452)
T cd06362 82 TKIDDCVYCDGGSPPPNNSPKPVAGVIGASYSSVSIQVANLLRLFKIPQISYAST--SPELSDKTRYDYFSRTVPPDSFQ 159 (452)
T ss_pred hcCCccccccCCCcccccCCCCeEEEECCCCCchHHHHHHHhccccCcccccccC--chhhccccccCCEEEecCChHHH
Confidence 58999999999999999999999999999999988 6664 456889999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCe
Q 008863 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSR 233 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~ 233 (550)
+.++++++++++|++|++|+++++|| ....+.+.+.+++.| ++|+....++... ...|+.+++++|++ .+++
T Consensus 160 ~~a~~~~l~~~~w~~vaii~~~~~~G--~~~~~~~~~~~~~~g-i~i~~~~~~~~~~----~~~d~~~~l~~l~~~~~a~ 232 (452)
T cd06362 160 AQAMVDIVKAFNWTYVSTVASEGNYG--EKGIEAFEKLAAERG-ICIAGSEKIPSSA----TEEEFDNIIRKLLSKPNAR 232 (452)
T ss_pred HHHHHHHHHHCCCcEEEEEEeCCHHH--HHHHHHHHHHHHHCC-eeEEEEEEcCCCC----CHHHHHHHHHHHhhcCCCe
Confidence 99999999999999999999999999 999999999999999 9999887776533 45799999999987 4899
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH-----
Q 008863 234 VFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL----- 308 (550)
Q Consensus 234 ~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~----- 308 (550)
+||+ .+....+..++++++++|+. ..+.||.++.|....... .......+|++++....... +.+++|++.
T Consensus 233 viil-~~~~~~~~~~~~~a~~~g~~-~~~~~i~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~i-~~f~~~l~~l~~~~ 308 (452)
T cd06362 233 VVVL-FCREDDIRGLLAAAKRLNAE-GHFQWIASDGWGARNSVV-EGLEDVAEGAITIELQSAEV-PGFDEYFLSLTPEN 308 (452)
T ss_pred EEEE-EcChHHHHHHHHHHHHcCCc-CceEEEEeccccccchhh-cccccccceEEEEEeccccc-ccHHHHhhhCCcCc
Confidence 9999 99999999999999999998 457999998886532211 22335678888877665443 456555432
Q ss_pred -----HHHHhhccCCCCC--------------C-------CCCCchhhHHhHHHHHHHHHHHhhcc---------C----
Q 008863 309 -----FRRNFTSEYPEED--------------H-------FHPSIHALRAHDSIKIITEAIGRLNY---------N---- 349 (550)
Q Consensus 309 -----~~~~~~~~~~~~~--------------~-------~~~~~~~~~~yDav~~~a~Al~~~~~---------~---- 349 (550)
|.+.||+..+.|. . .....+++++||||+++|+||+++.. |
T Consensus 309 ~~~~~~~~~~w~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~vyDAV~a~A~AL~~~l~~~~~~~~~~c~~~~ 388 (452)
T cd06362 309 NSRNPWFREFWEQKFNCKLTGNGSTKDNTCCTERILLLSNYEQESKVQFVIDAVYAMAHALHNMHRDLCPGTTGLCDAMK 388 (452)
T ss_pred CCCChHHHHHHHHhcCCCcCCCCccccCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCcc
Confidence 3444444333221 0 01234778899999999999998852 1
Q ss_pred CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeC----CeeeEEEEEeCCCCCc
Q 008863 350 ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG----KKYKELDFWLPNFGFS 408 (550)
Q Consensus 350 ~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~----~~~~~vG~w~~~~g~~ 408 (550)
+.++.+|.++|++++|.|++| +|+||++|++. ..|+|++++. .++++||.|++..|++
T Consensus 389 ~~~~~~l~~~l~~v~f~g~tg~~v~Fd~~G~~~-~~y~I~~~~~~~~~~~~~~VG~w~~~~~~~ 451 (452)
T cd06362 389 PIDGRKLLFYLRNVSFSGLAGGPVRFDANGDGP-GRYDIFNYQRTNGKYDYVKVGSWKGELSLN 451 (452)
T ss_pred CCCHHHHHHHHHhCCcCCCCCceEEECCCCCCC-CceEEEEEEEcCCceEEEEEEEEecccccC
Confidence 468899999999999999998 89999999996 6999999983 4689999999877753
|
Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III. |
| >cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=371.57 Aligned_cols=360 Identities=19% Similarity=0.263 Sum_probs=300.6
Q ss_pred CCCcEEEEEEEecCC----------------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHH
Q 008863 31 IEEVTKIGAIVDANS----------------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQA 85 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~----------------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a 85 (550)
.++.|.||++||.+. ..|.+...|+.+|+++||+++ |+++|+++++|+++++..+
T Consensus 9 ~~Gd~~igglFpvh~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~~am~~AieeIN~~~~lLp~i~Lg~~i~Dtc~~~~~a 88 (510)
T cd06364 9 KKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINNSPTLLPNITLGYRIFDTCNTVSKA 88 (510)
T ss_pred ecCCEEEEEEEECcccccccccccccCCCCCcccccChhhHHHHHHHHHHHHHHhCCCccCCCCEEeEEEEccCCchHHH
Confidence 457899999999973 467788999999999999998 7899999999999999999
Q ss_pred HHHHHHhhhcCC------------------eEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEE
Q 008863 86 ATAAQELINKEK------------------VKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIR 146 (550)
Q Consensus 86 ~~~~~~li~~~~------------------v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~ 146 (550)
++.+.+++.+++ +.+||||.+|..+.++++++..++||+|+++++ ++. .++..||++||
T Consensus 89 ~~~a~~li~~~~~~~~~~~~~c~~~~~~~~v~aVIG~~sS~~s~ava~~~~~~~IP~IS~~ss--s~~ls~~~~yp~ffR 166 (510)
T cd06364 89 LEATLSFVAQNKIDSLNLDEFCNCSEHIPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASS--SRLLSNKNQFKSFLR 166 (510)
T ss_pred HHHHHHHHhcccccccccccccccCCCCCceEEEECCCchhHHHHHHHHhccccccccccccC--CcccCCccccCCeeE
Confidence 999999986543 469999999999999999999999999999988 666 44568999999
Q ss_pred EecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHH
Q 008863 147 MASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK 226 (550)
Q Consensus 147 ~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~ 226 (550)
+.|++..+++++++++++|+|++|++|+++++|| +...+.+++.+++.| +||+..+.++... ...++.+++.+
T Consensus 167 t~psd~~q~~Ai~~l~~~f~wk~VaiI~~dd~yG--~~~~~~~~~~~~~~G-i~I~~~~~i~~~~----~~~d~~~~l~k 239 (510)
T cd06364 167 TIPNDEHQATAMADIIEYFRWNWVGTIAADDDYG--RPGIEKFREEAEERD-ICIDFSELISQYS----DEEEIQRVVEV 239 (510)
T ss_pred cCCChHHHHHHHHHHHHHcCCeEEEEEEecCcch--HHHHHHHHHHHHHCC-cEEEEEEEeCCCC----CHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999 9999887776532 45789999999
Q ss_pred hhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHH
Q 008863 227 VQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFS 306 (550)
Q Consensus 227 i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~ 306 (550)
++++++|+||+ .+....+..++++++++|+.+ .+||+++.|............+.+.|++++.+..... +.+++|+
T Consensus 240 lk~~~a~vVvl-~~~~~~~~~ll~qa~~~g~~~--~iwI~s~~w~~~~~~~~~~~~~~~gg~lg~~~~~~~i-~~f~~~l 315 (510)
T cd06364 240 IQNSTAKVIVV-FSSGPDLEPLIKEIVRRNITG--KIWLASEAWASSSLIAMPEYFDVMGGTIGFALKAGQI-PGFREFL 315 (510)
T ss_pred HHhcCCeEEEE-EeCcHHHHHHHHHHHHhCCCC--cEEEEEchhhcccccccCCccceeeEEEEEEECCCcC-ccHHHHH
Confidence 99999999999 999999999999999999986 5999999887543333333446778899888765544 6777777
Q ss_pred HH----------HHHHhhccCCCCC---------------------------------CCC----------------CCc
Q 008863 307 AL----------FRRNFTSEYPEED---------------------------------HFH----------------PSI 327 (550)
Q Consensus 307 ~~----------~~~~~~~~~~~~~---------------------------------~~~----------------~~~ 327 (550)
+. |.+.||+..+.|. .|. ...
T Consensus 316 ~~l~p~~~~~~~~~~~~we~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ 395 (510)
T cd06364 316 QKVHPKKSSHNGFAKEFWEETFNCYLEDSPKNALPVDTFLGHEESGDDSENGSTAFRPLCTGDENIASVETPYLDYTHLR 395 (510)
T ss_pred HhCCcccCCCChHHHHHHHHhcCCCCCCCcccccccccccccccccccccccccccCCCCCChhhhcccCCccccccchh
Confidence 65 3444554333321 111 112
Q ss_pred hhhHHhHHHHHHHHHHHhhccC----------------CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEe
Q 008863 328 HALRAHDSIKIITEAIGRLNYN----------------ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNV 390 (550)
Q Consensus 328 ~~~~~yDav~~~a~Al~~~~~~----------------~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~ 390 (550)
.+..+||||+++|+||+++..| ..++++|+++|++++|.|.+| ++.||++|+.. ..|+|+++
T Consensus 396 ~~~~v~~AVyAvAhaLh~~~~c~~~~~~~~~~~c~~~~~~~~~~l~~~L~~v~F~~~~g~~v~Fd~~Gd~~-~~YdI~n~ 474 (510)
T cd06364 396 ISYNVYLAVYSIAHALQDIYTCTPGKGLFTNGSCADIKKVEAWQVLKHLRHLNFTDNMGEQVRFDEGGDLV-GNYSIINW 474 (510)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCHHHHHHHHHhcEEecCCCCEEEEecCCCCc-cceeEEEe
Confidence 3567999999999999998643 145889999999999999998 89999999974 79999999
Q ss_pred eC----C--eeeEEEEEeCC
Q 008863 391 VG----K--KYKELDFWLPN 404 (550)
Q Consensus 391 ~~----~--~~~~vG~w~~~ 404 (550)
+. + .+++||.|++.
T Consensus 475 q~~~~~~~~~~v~VG~~~~~ 494 (510)
T cd06364 475 HLSPEDGSVVFKEVGYYNVY 494 (510)
T ss_pred eecCCCCcEEEEEEEEEcCC
Confidence 83 1 37899999864
|
Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci |
| >cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=358.02 Aligned_cols=342 Identities=15% Similarity=0.252 Sum_probs=281.4
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCC----CCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~----~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||+||+.++ .+.+.||++|++.+|.+. .+.+|...+. -...|++.+.+.+|++++ +||.|||||.+|..+
T Consensus 1 ~iG~if~~~~---~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~~~~~~C~~~~-~gV~AI~Gp~ss~~~ 76 (371)
T cd06388 1 QIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYS-RGVFAIFGLYDKRSV 76 (371)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhhccccccccceEEeeeeeecCCCChhHHHHHHHHHHh-CCceEEEecCCHHHH
Confidence 4899998664 456799999999999764 2357776655 356799999999999998 699999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.+++++|+..+||+|+++++ . ...+.|.+++.|+ +..++++++++++|++|++||++++ | ...++.|.
T Consensus 77 ~~v~~i~~~~~IP~I~~~~~--~----~~~~~f~i~~~p~---~~~a~~~~i~~~~wk~vaiiYd~~~-~--~~~lq~l~ 144 (371)
T cd06388 77 HTLTSFCSALHISLITPSFP--T----EGESQFVLQLRPS---LRGALLSLLDHYEWNRFVFLYDTDR-G--YSILQAIM 144 (371)
T ss_pred HHHHHHhhCCCCCeeecCcc--c----cCCCceEEEeChh---hhhHHHHHHHhcCceEEEEEecCCc-c--HHHHHHHH
Confidence 99999999999999998754 1 2345667777777 5788999999999999999997443 4 45788999
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
+.+++.| ++|+.....+. .+.|++.+|++|++.++++||+ .|+.+.+..+++||+++||.+++||||+++..
T Consensus 145 ~~~~~~g-~~v~~~~~~~~------~~~d~~~~L~~ik~~~~~~iil-~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~ 216 (371)
T cd06388 145 EKAGQNG-WQVSAICVENF------NDASYRRLLEDLDRRQEKKFVI-DCEIERLQNILEQIVSVGKHVKGYHYIIANLG 216 (371)
T ss_pred HhhHhcC-CeeeeEEeccC------CcHHHHHHHHHhcccccEEEEE-ECCHHHHHHHHHHHHhcCccccceEEEEccCc
Confidence 9999999 88877553332 2369999999999999999999 99999999999999999999999999998763
Q ss_pred hhhcccCChhHHhhcCc---eEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 271 ANALDSLNTTVISSMEG---TLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 271 ~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
.... +..++..| +.++...... ++.+++|.++|.+.+...+++. ++.|...++++||||+++++|++++.
T Consensus 217 ~~~~-----~l~~~~~g~~nitg~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~aAl~YDaV~l~a~A~~~l~ 289 (371)
T cd06388 217 FKDI-----SLERFMHGGANVTGFQLVDFN-TPMVTKLMQRWKKLDQREYPGS-ESPPKYTSALTYDGVLVMAEAFRNLR 289 (371)
T ss_pred cccc-----cHHHHhccCCceEEEEeecCC-ChhHHHHHHHHHhcCccccCCC-CCCccchHHHHHHHHHHHHHHHHHHH
Confidence 3222 22333343 6677765433 4789999999988776666432 24678899999999999999999753
Q ss_pred -------------cC-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCC
Q 008863 348 -------------YN-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGF 407 (550)
Q Consensus 348 -------------~~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~ 407 (550)
.| |..|..|+++|++++|+|+||+++||++|+|.++.++|++++..++++||+|++..|+
T Consensus 290 ~~~~~~~~~~~~~~C~~~~~~~w~~G~~i~~~lk~~~~~GlTG~i~Fd~~G~r~~~~l~Ii~l~~~g~~kvG~W~~~~g~ 369 (371)
T cd06388 290 RQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNIQFDHYGRRVNYTMDVFELKSNGPRKIGYWNDMDKL 369 (371)
T ss_pred hcCCCcccCCCCCCcCCCCCCCCcccHHHHHHHHhcCcCCCccceeECCCCCcccceEEEEEccCCCceEEEEEcCCCCc
Confidence 22 5677899999999999999999999999999989999999999999999999998886
Q ss_pred c
Q 008863 408 S 408 (550)
Q Consensus 408 ~ 408 (550)
+
T Consensus 370 ~ 370 (371)
T cd06388 370 V 370 (371)
T ss_pred c
Confidence 4
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). |
| >cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=364.11 Aligned_cols=353 Identities=20% Similarity=0.273 Sum_probs=287.0
Q ss_pred cEEEEEEEe-cC---CccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCC
Q 008863 34 VTKIGAIVD-AN---SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGME 105 (550)
Q Consensus 34 ~i~IG~i~~-~~---~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~ 105 (550)
.|+||+++| .+ +..|...+.|+++|+++||+++ ++..|.+.+.+.+. ++..+...+|+++. ++|.|||||.
T Consensus 2 ~i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~~d~~~~~~~~~~~l~-~~V~AiiGp~ 80 (384)
T cd06393 2 VIRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLA-LGVVAIFGPS 80 (384)
T ss_pred eeeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCccCCCceEEEEEEecccccchhHHHHhhcccc-cCcEEEECCC
Confidence 589999999 55 4567788999999999999988 67889998887544 67688899999886 6999999999
Q ss_pred ChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
+|..+.+++++|+.++||+|+++++ ++..+.. .+|++|+.|++..+..++++++++|+|++|++||+++. | ...
T Consensus 81 ~S~~~~av~~i~~~~~iP~Is~~~t--~~~lt~~-~~~~~~~~~~~~~~~~a~~~~~~~~~wk~vaily~~~~-g--~~~ 154 (384)
T cd06393 81 QGSCTNAVQSICNALEVPHIQLRWK--HHPLDNK-DTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDST-G--LIR 154 (384)
T ss_pred ChHHHHHHHHHHhccCCCeEeccCC--CcccCcc-ceeEEEeccCHHHHHHHHHHHHHHcCCcEEEEEEeCch-h--HHH
Confidence 9999999999999999999999988 6665433 36788888999899999999999999999999998765 5 555
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
++.+.+.+++.| ++|... .++. .+.|++.+|++|+..++++||+ .++.+.+..+++||+++||..+.|+|+
T Consensus 155 l~~~~~~~~~~g-~~v~~~-~~~~------~~~d~~~~L~~ik~~~~~~iil-~~~~~~~~~il~qa~~~gm~~~~~~~~ 225 (384)
T cd06393 155 LQELIMAPSRYN-IRLKIR-QLPT------DSDDARPLLKEMKRGREFRIIF-DCSHQMAAQILKQAMAMGMMTEYYHFI 225 (384)
T ss_pred HHHHHHhhhccC-ceEEEE-ECCC------CchHHHHHHHHHhhcCceEEEE-ECCHHHHHHHHHHHHHhccccCceEEE
Confidence 567888888889 998763 3543 3479999999999999999999 999999999999999999999999999
Q ss_pred EeccchhhcccCChhHHhh-cCc--eEEEEeecCCCChhHHHHHHHHHHH-hhccCCCCCC---CCCCchhhHHhHHHHH
Q 008863 266 VTNTVANALDSLNTTVISS-MEG--TLGIKSYYSDDSSPYKEFSALFRRN-FTSEYPEEDH---FHPSIHALRAHDSIKI 338 (550)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~-~~g--~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~---~~~~~~~~~~yDav~~ 338 (550)
+++......+.. .+ ..| ..++...... ++.+++|.++|+++ +......... ..+...++++||||++
T Consensus 226 ~~~~~~~~~~~~-----~~~~~~~~it~~~~~~~~-~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aal~yDav~~ 299 (384)
T cd06393 226 FTTLDLYALDLE-----PYRYSGVNLTGFRILNVD-NPHVSSIVEKWSMERLQAAPKPETGLLDGVMMTDAALLYDAVHM 299 (384)
T ss_pred EccCccccccch-----hhhcCcceEEEEEecCCC-cHHHHHHHHHHHhhhhccccccccccccccccchhHHhhhhHHH
Confidence 887644332221 11 233 3455554333 48899999999754 5332111001 1235689999999999
Q ss_pred HHHHHHhhcc-------C-----CCCHHHHHHHHHhCcccccceeEEEeC-CCCCCCCceEEEEeeCCeeeEEEEEeCCC
Q 008863 339 ITEAIGRLNY-------N-----ISSPEMLLRQMLSSDFSGLSGKIRFKD-GELLNADTLRIVNVVGKKYKELDFWLPNF 405 (550)
Q Consensus 339 ~a~Al~~~~~-------~-----~~~~~~l~~~l~~~~~~G~tG~i~f~~-~g~~~~~~~~i~~~~~~~~~~vG~w~~~~ 405 (550)
+++|++++.. | |..|..|+++|++++|+|+||+++||+ +|.|.++.++|+++.+.++++||+|++..
T Consensus 300 ~a~A~~~~~~~~~~~~~c~~~~~w~~G~~i~~~l~~~~~~GltG~i~Fd~~~g~r~~~~~~i~~~~~~g~~~vg~W~~~~ 379 (384)
T cd06393 300 VSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWNPNT 379 (384)
T ss_pred HHHHHhhhhhcCCCCCCCCCCCCCcccHHHHHHHhheeecccccceEecCCCCeeeeeEEEEEEecCCcceeeEEEcCCC
Confidence 9999996532 2 667899999999999999999999996 78999999999999999999999999998
Q ss_pred CCc
Q 008863 406 GFS 408 (550)
Q Consensus 406 g~~ 408 (550)
|++
T Consensus 380 g~~ 382 (384)
T cd06393 380 GLN 382 (384)
T ss_pred CcC
Confidence 875
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated |
| >cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=359.71 Aligned_cols=348 Identities=16% Similarity=0.251 Sum_probs=284.7
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||+||+... .+.+.||++|++.+|.. +.+|.+.+. -...|++.+.+.+|++++ +||.||+||.++..+.+++
T Consensus 1 ~ig~if~~~~---~~~~~af~~a~~~~n~~--~~~l~~~~~~~~~~dsf~~~~~~C~~~~-~GV~AI~Gp~ss~~~~~v~ 74 (370)
T cd06389 1 QIGGLFPRGA---DQEYSAFRVGMVQFSTS--EFRLTPHIDNLEVANSFAVTNAFCSQFS-RGVYAIFGFYDKKSVNTIT 74 (370)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhccc--CceeeeeeEEecccchHHHHHHHHHHhh-cCcEEEEecCCHHHHHHHH
Confidence 4899998764 46789999999999986 577777554 466799999999999998 6999999999999999999
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
++|+.++||+|+++++ . ...++|.+++.|+ ...++++++++|+|++|++||+ ++|| ...++.+.+.++
T Consensus 75 ~i~~~~~IP~I~~~~~--~----~~~~~f~~~~~p~---~~~ai~d~i~~~~wk~vailYd-sd~g--l~~lq~l~~~~~ 142 (370)
T cd06389 75 SFCGTLHVSFITPSFP--T----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLYD-SDRG--LSTLQAVLDSAA 142 (370)
T ss_pred HhhccCCCCeeeecCC--C----CCCCceEEEecch---hhhHHHHHHHhcCCcEEEEEec-CchH--HHHHHHHHHhhc
Confidence 9999999999998765 2 2356889999998 6899999999999999999998 5688 889999999999
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhc
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANAL 274 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 274 (550)
+.| ++|.......... .....|++.+|++|++.++++||+ .|+.+.+..++++|+++||.++.|+||+++......
T Consensus 143 ~~g-~~V~~~~~~~i~~--~~~~~d~~~~L~~ik~~~~~~Iil-~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~ 218 (370)
T cd06389 143 EKK-WQVTAINVGNINN--DRKDEAYRSLFQDLENKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDG 218 (370)
T ss_pred cCC-ceEEEEEeecCCC--ccchHHHHHHHHHhccccceEEEE-ECCHHHHHHHHHHHHHhCccccceEEEEccCCcccc
Confidence 999 8877543211110 113469999999999999999999 999999999999999999999999999987633222
Q ss_pred ccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc-------
Q 008863 275 DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN------- 347 (550)
Q Consensus 275 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~------- 347 (550)
++.. ......++.+++..... ++..++|.++|++....+++...+..+...++++||||+++++|++++.
T Consensus 219 ~l~~--~~~~~~nitg~~~~~~~-~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~aAl~yDAV~v~a~A~~~l~~~~~~~~ 295 (370)
T cd06389 219 DLSK--IQFGGANVSGFQIVDYD-DPLVSKFIQRWSTLEEKEYPGAHTKTIKYTSALTYDAVQVMTEAFRNLRKQRIEIS 295 (370)
T ss_pred chhh--hccCCcceEEEEEecCC-CchHHHHHHHHHhcCccccCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 2211 00112245666654443 4889999999987444445433335678899999999999999999763
Q ss_pred ------cC-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCc
Q 008863 348 ------YN-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (550)
Q Consensus 348 ------~~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~ 408 (550)
.| |.+|..|.++|++++|+|+||+|+||++|+|.++.++|++++..++++||+|++..|++
T Consensus 296 ~~~~~~~C~~~~~~~w~~G~~i~~~l~~~~~~GlTG~i~Fd~~G~r~~~~~~ii~l~~~g~~kvG~W~~~~~~~ 369 (370)
T cd06389 296 RRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLTGNIKFDQNGKRINYTINVMELKSNGPRKIGYWSEVDKMV 369 (370)
T ss_pred cCCCCCCcCCCCCCCCCCcHHHHHHHHhcccCccccceEeCCCCccccceEEEEEecCCcceEEEEEcCCCCcc
Confidence 22 56899999999999999999999999999999889999999999999999999988864
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). |
| >cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=370.01 Aligned_cols=358 Identities=18% Similarity=0.226 Sum_probs=296.1
Q ss_pred cEEEEEEEecCC----------------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHH
Q 008863 34 VTKIGAIVDANS----------------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATA 88 (550)
Q Consensus 34 ~i~IG~i~~~~~----------------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~ 88 (550)
.|.||++||.+. ..|.+...|+.+|+++||++. ||++|++.++|+++++..+++.
T Consensus 2 di~igglf~vh~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~~~~a~~~ 81 (469)
T cd06365 2 DLVIGGFFPLYTLSGPFETDDWHPFSADLDFRLLLKNYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKALES 81 (469)
T ss_pred CeeEeceEEEEEeccccccccccCccccccccccchhhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCccHHHHHH
Confidence 588999998761 346788899999999999887 8999999999999999999999
Q ss_pred HHHhhhc-------------CCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcHHh
Q 008863 89 AQELINK-------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDSEQ 154 (550)
Q Consensus 89 ~~~li~~-------------~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~~~ 154 (550)
+.+++.. +++++||||.+|..+.+++++++.++||+|+++++ ++. .++..|||+||+.|++..+
T Consensus 82 ~~~~~~~~~~~~~~~~C~~~~~vvavIG~~~S~~s~~va~i~~~~~IP~Is~~st--s~~lsd~~~yp~ffRt~psd~~q 159 (469)
T cd06365 82 SLMWLSGEGETIPNYSCRRQRKSVAVIGGPSWALSATIATLLGLYKFPQLTYGPF--DPLLSDRVQFPSLYQMAPKDTSL 159 (469)
T ss_pred HHHHHhCCCcccCCccCCCCCceEEEEcCCccHHHHHHHHHhhhhcccceeeccC--CccccchhhCCcceEecCCchhH
Confidence 9999853 57999999999999999999999999999999988 666 4567889999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeE
Q 008863 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ 234 (550)
+.|+++++++|+|++|++|+++++|| ....+.+.+.+++.| +||...+.++... .....++..++++++++++|+
T Consensus 160 ~~ai~~li~~f~W~~Vaiv~~d~~yg--~~~~~~~~~~~~~~g-i~I~~~~~i~~~~--~~~~~~~~~~l~~i~~~~arv 234 (469)
T cd06365 160 PLGMVSLMLHFSWTWVGLVISDDDRG--EQFLSDLREEMQRNG-ICLAFVEKIPVNM--QLYLTRAEKYYNQIMTSSAKV 234 (469)
T ss_pred HHHHHHHHHhcCCeEEEEEEecChhH--HHHHHHHHHHHHHCC-eEEEEEEEecCCc--hhhHHHHHHHHHHhhcCCCeE
Confidence 99999999999999999999999999 999999999999999 9999988887643 011247889999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH------
Q 008863 235 FIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL------ 308 (550)
Q Consensus 235 ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~------ 308 (550)
||+ ++..+.+..++.++.+.+..+ ++||+++.|....... ....+.++|++++.++.... |.+++|+++
T Consensus 235 Ivl-~~~~~~~~~l~~~~~~~~~~~--~~wi~s~~w~~~~~~~-~~~~~~~~G~lg~~~~~~~~-~~f~~fl~~l~~~~~ 309 (469)
T cd06365 235 III-YGDTDSLLEVSFRLWQYLLIG--KVWITTSQWDVTTSPK-DFTLNSFHGTLIFSHHHSEI-PGFKDFLQTVNPSKY 309 (469)
T ss_pred EEE-EcCcHHHHHHHHHHHHhccCc--eEEEeecccccccccc-ccccceeeEEEEEEeccCcC-cchHHHhhccCcccC
Confidence 999 898888877766666655544 7999999886543221 22346789999999876665 889998876
Q ss_pred ----HHHHhhccCCCCC----------CCC----------------CCchhhHHhHHHHHHHHHHHhhccC---------
Q 008863 309 ----FRRNFTSEYPEED----------HFH----------------PSIHALRAHDSIKIITEAIGRLNYN--------- 349 (550)
Q Consensus 309 ----~~~~~~~~~~~~~----------~~~----------------~~~~~~~~yDav~~~a~Al~~~~~~--------- 349 (550)
|-..||+..+.|. .|. ....+.++||||+++|+||+++..|
T Consensus 310 ~~npw~~efwe~~f~c~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~v~dAVya~AhALh~~l~c~~~~~~~~~ 389 (469)
T cd06365 310 PEDIFLEKLWWIYFNCSLSKSSCKTLKNCLSNASLEWLPLHYFDMAMSEESYNVYNAVYAVAHALHEMLLQQVETQSENN 389 (469)
T ss_pred CCccHHHhhHhHhcCcccCcCCccccCCCCCCccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 3445665544432 111 1224577999999999999999754
Q ss_pred ----CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeC-----CeeeEEEEEeCC
Q 008863 350 ----ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWLPN 404 (550)
Q Consensus 350 ----~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~~~ 404 (550)
..++++|+++|++++|.|.+| .+.||++|+.. ..|+|++++. ..+++||.|++.
T Consensus 390 ~~~~~~~~~~l~~~l~~v~F~~~~g~~v~Fd~nGd~~-~~YdI~n~q~~~~~~~~~~~VG~~~~~ 453 (469)
T cd06365 390 GKRLIFLPWQLHSFLKNIQFKNPAGDEVNLNQKRKLD-TEYDILNYWNFPQGLGLKVKVGEFSPQ 453 (469)
T ss_pred CCCCCccHHHHHHHHHhccccCCCCCEEEecCCCCcC-ceeeEEEEEECCCCCEEEEEEEEEeCC
Confidence 146889999999999999999 79999999984 7999999972 247999999863
|
Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors. |
| >cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=371.60 Aligned_cols=358 Identities=19% Similarity=0.261 Sum_probs=295.3
Q ss_pred CCcEEEEEEEecCC-----------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHH
Q 008863 32 EEVTKIGAIVDANS-----------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQE 91 (550)
Q Consensus 32 ~~~i~IG~i~~~~~-----------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~ 91 (550)
+++|.||++||.+. ..|.+...|+.+|+++||+++ ||++|++.++|+|+++..|++.+.+
T Consensus 7 ~Gd~~igglfpvh~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~ 86 (472)
T cd06374 7 DGDIIIGALFSVHHQPAAEKVPERKCGEIREQYGIQRVEAMFHTLDRINADPVLLPNITLGCEIRDSCWHSSVALEQSIE 86 (472)
T ss_pred cCCEEEEEEEecccccccCCCCCCCccccCcchhHHHHHHHHHHHHHHhCCcccCCCceeccEEEEcCCCchHHHHHHHH
Confidence 46899999999872 257788899999999999998 8999999999999999999999999
Q ss_pred hhh-------------------------cCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEE
Q 008863 92 LIN-------------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLI 145 (550)
Q Consensus 92 li~-------------------------~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~ 145 (550)
++. +++|.+||||.+|..+.++++++..++||+|+++++ ++.+ ++..|||+|
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~aiiGp~~S~~~~ava~~~~~~~iP~Is~~at--s~~ls~~~~~p~~f 164 (472)
T cd06374 87 FIRDSLISIRDEKDGVNPDGQSPGPNKSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAYSAT--SIDLSDKTLFKYFL 164 (472)
T ss_pred HHhhcccccccccccccccCCCcccccCCCCeEEEECCCcchHHHHHHHHhhhhcccccccccC--chhhcccccCCceE
Confidence 885 248999999999999999999999999999999988 6664 456899999
Q ss_pred EEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHH
Q 008863 146 RMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELK 225 (550)
Q Consensus 146 ~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~ 225 (550)
|+.|++..++.++++++++|+|++|++|+++++|| ....+.+.+.+++.| +||+....++... ...+++.++.
T Consensus 165 Rt~p~d~~~~~al~~l~~~~~W~~Vaii~~~~~yg--~~~~~~~~~~~~~~g-i~i~~~~~i~~~~----~~~d~~~~l~ 237 (472)
T cd06374 165 RVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYG--ESGMEAFKELAAHEG-LCIAHSDKIYSNA----GEQSFDRLLR 237 (472)
T ss_pred EcCCChHHHHHHHHHHHHHCCCcEEEEEEecchHH--HHHHHHHHHHHHHCC-eeEEEEEEecCCC----chHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999 9999887775432 4579999999
Q ss_pred HhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHH
Q 008863 226 KVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYK 303 (550)
Q Consensus 226 ~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 303 (550)
+|++. ++++|++ .+....+..++++++++|+. ..++||.++.|........ ...+..+|++++....... +.++
T Consensus 238 ~lk~~~~da~vvv~-~~~~~~~~~~l~~a~~~g~~-~~~~wi~s~~~~~~~~~~~-~~~~~~~G~l~~~~~~~~~-~~F~ 313 (472)
T cd06374 238 KLRSRLPKARVVVC-FCEGMTVRGLLMAMRRLGVG-GEFQLIGSDGWADRDDVVE-GYEEEAEGGITIKLQSPEV-PSFD 313 (472)
T ss_pred HHHhcCCCcEEEEE-EechHHHHHHHHHHHHhcCC-CceEEEEecccccchHhhh-cchhhhheeEEEEecCCCC-ccHH
Confidence 99975 5556666 67888899999999999997 4479999998875322221 2345678999998765554 6777
Q ss_pred HHHHH----------HHHHhhccCCCCC-------------CCC----------CCchhhHHhHHHHHHHHHHHhhcc--
Q 008863 304 EFSAL----------FRRNFTSEYPEED-------------HFH----------PSIHALRAHDSIKIITEAIGRLNY-- 348 (550)
Q Consensus 304 ~f~~~----------~~~~~~~~~~~~~-------------~~~----------~~~~~~~~yDav~~~a~Al~~~~~-- 348 (550)
+|++. |...||+..+.|. .|. ...+++++||||+++|+||+++..
T Consensus 314 ~~l~~l~~~~~~~~~~~~~~w~~~f~c~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~vyDAVyaiA~ALh~~~~~~ 393 (472)
T cd06374 314 DYYLKLRPETNTRNPWFREFWQHRFQCRLPGHPQENPNYIKICTGNESLDEQYVQDSKMGFVINAIYAMAHGLHNMHQDL 393 (472)
T ss_pred HHHHhCCcccCCCChHHHHHHHHhcCCCcCCccCcCCccCCCCCCcccccccccccceeHHHHHHHHHHHHHHHHHHHhh
Confidence 76653 2233443333221 011 124566899999999999999852
Q ss_pred -------C----CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeC-----CeeeEEEEEeC
Q 008863 349 -------N----ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWLP 403 (550)
Q Consensus 349 -------~----~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~~ 403 (550)
| +.+|..|.++|++++|.|++| +|.||++|++. ..|+|++++. .++++||.|++
T Consensus 394 ~~~~~~~c~~~~~~~~~~l~~~l~~v~F~g~tG~~v~Fd~~G~~~-~~ydI~n~~~~~~~~~~~~~VG~w~~ 464 (472)
T cd06374 394 CPGHVGLCDAMKPIDGRKLLEYLLKTSFSGVSGEEVYFDENGDSP-GRYDIMNLQYTEDLRFDYINVGSWHE 464 (472)
T ss_pred CCCCCCCCcCCCCCCHHHHHHHHHhCcccCCCCCeEEEcCCCCCC-CceEEEEEEECCCCCEEEEEEEEEeC
Confidence 1 246889999999999999999 89999999986 6999999984 36899999974
|
Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. |
| >cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=358.75 Aligned_cols=331 Identities=20% Similarity=0.244 Sum_probs=279.1
Q ss_pred cchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhc------------------CCeEEEEcCCC
Q 008863 47 MGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINK------------------EKVKVIAGMET 106 (550)
Q Consensus 47 ~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~------------------~~v~aiiG~~~ 106 (550)
.|.+...|+.+|+|+||+++ +|++|+++++|+++++..+++.+.+++++ ++|.+||||.+
T Consensus 33 ~g~~~~~am~~AieeIN~~~~Lpg~~L~~~i~Dt~~~~~~a~~~a~~li~~~~~~~~~~~~~c~~~~~~~~V~aVIG~~~ 112 (403)
T cd06361 33 KGFLQTLAMIHAIEMINNSTLLLGVTLGYEIYDTCSEVTTAMAAVLRFLSKFNCSRSTVEFKCDYSQYVPRIKAVIGAGY 112 (403)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCEEceEEEeCCCChHHHHHHHHHHHhhcccccccccccccCCCCCCCeEEEECCCc
Confidence 47788999999999999998 89999999999999999999999999974 58999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
|..+.+++++++.++||+|+++++ ++.++ +.+|||+||+.|++..+++++++++++|+|++|++|+++++|| +..
T Consensus 113 S~~s~ava~v~~~~~IP~IS~~at--s~~Ls~~~~~~~ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~~d~yG--~~~ 188 (403)
T cd06361 113 SEISMAVSRMLNLQLIPQVSYAST--AEILSDKIRFPSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIIITDDDYG--RSA 188 (403)
T ss_pred chHHHHHHHHhccCCcceEecCcC--CcccCCcccCCCeeECCCchHhHHHHHHHHHHHcCCcEEEEEEecCchH--HHH
Confidence 999999999999999999999999 77754 6788999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCC-ChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISD-PKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~-~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
.+.|++.+++.| +||...+.++....... ...++..+++.++++++|+||+ .+....+..++++|+++|+ +++|
T Consensus 189 ~~~f~~~~~~~G-icIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv-~~~~~~~~~l~~~a~~~g~---~~~w 263 (403)
T cd06361 189 LETFIIQAEANG-VCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVV-FARQFHVFLLFNKAIERNI---NKVW 263 (403)
T ss_pred HHHHHHHHHHCC-eEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEE-EeChHHHHHHHHHHHHhCC---CeEE
Confidence 999999999999 99999888876421000 1145666777788899999999 9999999999999999999 3799
Q ss_pred EEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHH
Q 008863 265 IVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (550)
|+++.|................|.+++.+... ...+|.+.|++.+ ...+||||+++|+||+
T Consensus 264 igs~~w~~~~~~~~~~~~~~~~g~ig~~~~~~----~~~~F~~~~~~~~---------------~~~v~~AVyaiA~Al~ 324 (403)
T cd06361 264 IASDNWSTAKKILTDPNVKKIGKVVGFTFKSG----NISSFHQFLKNLL---------------IHSIQLAVFALAHAIR 324 (403)
T ss_pred EEECcccCccccccCCcccccceEEEEEecCC----ccchHHHHHHHhh---------------HHHHHHHHHHHHHHHH
Confidence 99999976444333223355678888877543 3344444444432 3357999999999999
Q ss_pred hhccC-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCC----eeeEEEEEeCCCC
Q 008863 345 RLNYN-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGK----KYKELDFWLPNFG 406 (550)
Q Consensus 345 ~~~~~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~----~~~~vG~w~~~~g 406 (550)
++..+ ..++++|+++|++++|.|.+|++.||++|+. ...|+|++++++ .+++||.|++...
T Consensus 325 ~~~~~~~c~~~~~~~~~~l~~~L~~~~f~g~~~~v~Fd~~gd~-~~~y~I~~~~~~~~~~~~~~vg~~~~~~~ 396 (403)
T cd06361 325 DLCQERQCQNPNAFQPWELLGQLKNVTFEDGGNMYHFDANGDL-NLGYDVVLWKEDNGHMTVTIMAEYDPQND 396 (403)
T ss_pred HhccCCCCCCCCCcCHHHHHHHHheeEEecCCceEEECCCCCC-CcceEEEEeEecCCcEEEEEEEEEeCCCC
Confidence 98631 2489999999999999999889999999987 579999999863 3799999998544
|
This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. |
| >cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=364.12 Aligned_cols=354 Identities=16% Similarity=0.241 Sum_probs=297.4
Q ss_pred cEEEEEEEecCC-------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhh---
Q 008863 34 VTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELIN--- 94 (550)
Q Consensus 34 ~i~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~--- 94 (550)
++.||++||.+. ..|.+...|+.+|+++||+++ ||++|++.++|+++++..+++.+.+++.
T Consensus 2 d~~igglFp~h~~~~~~~~C~~~~~~~g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~~ 81 (458)
T cd06375 2 DLVLGGLFPVHEKGEGTEECGRINEDRGIQRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRASL 81 (458)
T ss_pred CEEEEEEEEeeeCCCCCCCCcCccccchHHHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCCcHHHHHHHHHHHhhhh
Confidence 689999999972 358889999999999999998 7999999999999999999999887772
Q ss_pred ---------------------cCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcH
Q 008863 95 ---------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDS 152 (550)
Q Consensus 95 ---------------------~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~ 152 (550)
.++|.|||||.+|..+.++++++..++||+|+++++ ++.+ ++..|||+||+.|++.
T Consensus 82 ~~~~~~~~~C~~~~~~~~~~~~~~V~aVIG~~~S~~s~ava~~~~~~~IP~Is~~st--s~~Ls~~~~~~~ffRt~psd~ 159 (458)
T cd06375 82 TKVDTSEYECPDGSYAVQENSPLAIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVPPDF 159 (458)
T ss_pred hcccccccccccCCccccccCCCCeEEEEcCCCchHHHHHHHHhhhccccceeeccC--ChhhcccccCCCeEEecCCcH
Confidence 247999999999999999999999999999999988 6764 5667899999999999
Q ss_pred HhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CC
Q 008863 153 EQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQ 231 (550)
Q Consensus 153 ~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~ 231 (550)
.+++|+++++++|+|++|++||++++|| ....+.+.+.+++.| +||+..+.++... ...|+..+++++++ .+
T Consensus 160 ~qa~ai~~ll~~~~W~~Vaii~~~~~yG--~~~~~~~~~~~~~~g-i~i~~~~~i~~~~----~~~d~~~~l~~l~~~~~ 232 (458)
T cd06375 160 YQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ICIATSEKVGRSA----DRKSYDSVIRKLLQKPN 232 (458)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeCchHH--HHHHHHHHHHHHHCC-eeEEEEEEecCCC----CHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999 999999999999999 9999888776543 45799999999875 59
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH---
Q 008863 232 SRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL--- 308 (550)
Q Consensus 232 ~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~--- 308 (550)
+|+||+ .+..+++..++++|.++|+. +.||+++.|....... .......+|++++.+..... +.+++|+++
T Consensus 233 a~vVvl-~~~~~~~~~ll~~a~~~g~~---~~wigs~~~~~~~~~~-~~~~~~~~G~i~~~~~~~~i-~~f~~yl~~l~p 306 (458)
T cd06375 233 ARVVVL-FTRSEDARELLAAAKRLNAS---FTWVASDGWGAQESIV-KGSEDVAEGAITIELASHPI-PDFDRYFQSLTP 306 (458)
T ss_pred CEEEEE-ecChHHHHHHHHHHHHcCCc---EEEEEeccccccchhh-hccchhhceEEEEEeccccc-hhHHHHHHhCCc
Confidence 999999 99999999999999999986 6999999986432211 11235678999998876555 888888876
Q ss_pred -------HHHHhhccCCCCC---------CC------------CCCchhhHHhHHHHHHHHHHHhhcc--C---------
Q 008863 309 -------FRRNFTSEYPEED---------HF------------HPSIHALRAHDSIKIITEAIGRLNY--N--------- 349 (550)
Q Consensus 309 -------~~~~~~~~~~~~~---------~~------------~~~~~~~~~yDav~~~a~Al~~~~~--~--------- 349 (550)
|-..||+..+.|. .| .......++||||+++|+||+++.. |
T Consensus 307 ~~~~~n~w~~e~w~~~f~c~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~~AVyA~AhaLh~~l~~~c~~~~~~c~~ 386 (458)
T cd06375 307 ETNTRNPWFKDFWEQKFQCSLQNRDCANTTTNDKERLLDKVNYEQESKIMFVVNAVYAMAHALHNMQRDLCPNTTKLCDA 386 (458)
T ss_pred CcCCCCcHHHHHHHHHcCCCCCCCCccCCCCCchhcccccCcccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4455665554432 11 1134677899999999999999863 2
Q ss_pred --CCCHHHHH-HHHHhCccc-----ccce-eEEEeCCCCCCCCceEEEEeeC--C----eeeEEEEEeC
Q 008863 350 --ISSPEMLL-RQMLSSDFS-----GLSG-KIRFKDGELLNADTLRIVNVVG--K----KYKELDFWLP 403 (550)
Q Consensus 350 --~~~~~~l~-~~l~~~~~~-----G~tG-~i~f~~~g~~~~~~~~i~~~~~--~----~~~~vG~w~~ 403 (550)
..++++|. .+|++++|. |.+| ++.||++|+.. ..|+|++++. + .+++||.|+.
T Consensus 387 ~~~~~~~~l~~~~L~~v~F~~~~~~~~~g~~v~Fd~nGd~~-~~YdI~n~q~~~~~~~~~~~~VG~w~~ 454 (458)
T cd06375 387 MKPLDGKKLYKEYLLNVSFTAPFRPDLADSEVKFDSQGDGL-GRYNIFNYQRTGNSYGYRYVGVGAWAN 454 (458)
T ss_pred CCCCCHHHHHHHHHHhccccccccCCCCCCeeEECCCCCCC-cceEEEEEEEcCCCCcEEEEEEEEEec
Confidence 24678999 599999999 9988 89999999974 7999999983 2 2789999964
|
Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes |
| >cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=366.76 Aligned_cols=357 Identities=19% Similarity=0.286 Sum_probs=287.0
Q ss_pred cEEEEEEEecC--C-----------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHH----Hhh
Q 008863 34 VTKIGAIVDAN--S-----------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQ----ELI 93 (550)
Q Consensus 34 ~i~IG~i~~~~--~-----------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~----~li 93 (550)
+|+||++||.+ . ..|.+...|+++|+++||+++ ||++|+++++|+++++..+.+.+. +++
T Consensus 2 di~igglfp~h~~~~~~~~c~~~~~~~g~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~~~~~a~~~~~~l~ 81 (463)
T cd06376 2 DITLGGLFPVHARGPAGVPCGDIKKENGIHRLEAMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQALI 81 (463)
T ss_pred CeEEEEEEeeeeCCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCCceEccEEEeccCCcHHHHHHHHHHHhhhh
Confidence 69999999988 1 266778899999999999998 789999999999988765554444 333
Q ss_pred hc------------------CCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHh
Q 008863 94 NK------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQ 154 (550)
Q Consensus 94 ~~------------------~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~ 154 (550)
.+ ++|.|||||.+|..+.+++++++.++||+|+++++ ++.+ ++..|||+||+.|++..+
T Consensus 82 ~~~~~~~~C~~~~~~~~~~~~~V~aviG~~~S~~t~ava~i~~~~~iP~Is~~at--s~~ls~~~~~~~ffR~~p~d~~~ 159 (463)
T cd06376 82 QKDTSDVRCTNGEPPVFVKPEKVVGVIGASASSVSIMVANILRLFQIPQISYAST--APELSDDRRYDFFSRVVPPDSFQ 159 (463)
T ss_pred hcccccCcCCCCCccccCCCCCeEEEECCCCchHHHHHHHHhccccCcccccccC--ChhhcccccCCceEEccCCHHHH
Confidence 21 58999999999999999999999999999999988 6664 456789999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCe
Q 008863 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSR 233 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~ 233 (550)
+.++++++++|+|++|++|+++++|| ....+.+.+.+++.|.++|.....++... ...|+..++++|++ .+++
T Consensus 160 ~~ai~~~i~~~~w~~Vaii~~~~~yg--~~~~~~~~~~~~~~g~~~v~~~~~i~~~~----~~~d~~~~l~~ik~~~~~~ 233 (463)
T cd06376 160 AQAMVDIVKALGWNYVSTLASEGNYG--ESGVEAFTQISREAGGVCIAQSIKIPREP----RPGEFDKIIKRLLETPNAR 233 (463)
T ss_pred HHHHHHHHHHcCCeEEEEEEeCChHH--HHHHHHHHHHHHHcCCceEEEEEecCCCC----CHHHHHHHHHHHhccCCCe
Confidence 99999999999999999999999999 99999999999887416776655554332 45799999999987 6999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH-----
Q 008863 234 VFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL----- 308 (550)
Q Consensus 234 ~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~----- 308 (550)
+||+ .+..+++..++++|+++|+.+ .|+||+++.|........ .....+.|++++.+..... +.+++|...
T Consensus 234 vIvl-~~~~~~~~~ll~~a~~~~~~g-~~~wig~d~~~~~~~~~~-~~~~~~~G~~~~~~~~~~~-~~F~~~~~~l~~~~ 309 (463)
T cd06376 234 AVII-FANEDDIRRVLEAAKRANQVG-HFLWVGSDSWGAKISPIL-QQEDVAEGAITILPKRASI-EGFDAYFTSRTLEN 309 (463)
T ss_pred EEEE-ecChHHHHHHHHHHHhcCCcC-ceEEEEeccccccccccc-cCcceeeeEEEEEeccccc-hhHHHHHHhCCccc
Confidence 9999 999999999999999999986 489999999875432221 1234678999988765544 777777663
Q ss_pred -----HHHHhhccCCCCC----------------CCC---------CCchhhHHhHHHHHHHHHHHhhcc---------C
Q 008863 309 -----FRRNFTSEYPEED----------------HFH---------PSIHALRAHDSIKIITEAIGRLNY---------N 349 (550)
Q Consensus 309 -----~~~~~~~~~~~~~----------------~~~---------~~~~~~~~yDav~~~a~Al~~~~~---------~ 349 (550)
|...+|+..+.|. +.. ....++++||||+++|+||+++.. |
T Consensus 310 ~~~~~~~~~~w~~~f~c~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~dAVyaiA~ALh~l~~~~c~~~~~~C 389 (463)
T cd06376 310 NRRNVWFAEFWEENFNCKLTISGSKKEDTDRKCTGQERIGRDSTYEQEGKVQFVIDAVYAMAHALHSMHKDLCPGYTGVC 389 (463)
T ss_pred CCCCcHHHHHHHHhCCCcccCCCCccccccCcCcchhhccccCcccccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 2233443322221 110 122677899999999999999852 2
Q ss_pred ----CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeC-----CeeeEEEEEeC
Q 008863 350 ----ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWLP 403 (550)
Q Consensus 350 ----~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~~ 403 (550)
+.+|++|.++|++++|+|++| +|.||++|++. ..|+|++++. .++++||.|++
T Consensus 390 ~~~~~~~~~~l~~~L~~v~F~g~tg~~v~Fd~~G~~~-~~Ydi~n~q~~~~~~~~~~~VG~w~~ 452 (463)
T cd06376 390 PEMEPADGKKLLKYIRAVNFNGSAGTPVMFNENGDAP-GRYDIFQYQITNTSSPGYRLIGQWTD 452 (463)
T ss_pred ccCCCCCHHHHHHHHHhCCccCCCCCeEEeCCCCCCC-CceEEEEEEecCCCceeEEEEEEECC
Confidence 457899999999999999999 89999999985 6899999872 46899999975
|
Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. |
| >cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=357.72 Aligned_cols=350 Identities=17% Similarity=0.297 Sum_probs=280.6
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecC-CCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDH-NRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~-~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
+||+||+.+ +...+.|+++|++++|.+. ++++|.+.+.++ .+|+..+.+.+|++++ ++|.|||||.+|..+.
T Consensus 1 ~iG~if~~~---~~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~-~~V~aiiGp~~s~~~~ 76 (382)
T cd06380 1 PIGGLFDVD---EDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAICSQLS-RGVFAIFGSYDKSSVN 76 (382)
T ss_pred CceeEECCC---ChHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHHHHHHHh-cCcEEEEecCcHHHHH
Confidence 489999998 4788999999999999874 456777667754 5899999999999997 5999999999999999
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
+++++|+.++||+|+++++ .+.+ ...++|+||+.|+ ...++++++++++|++|++||++++ | ....+.+.+
T Consensus 77 ~~~~~~~~~~iP~i~~~~~--~~~l-~~~~~~~fr~~p~---~~~a~~~~~~~~~wk~vaii~~~~~-~--~~~~~~~~~ 147 (382)
T cd06380 77 TLTSYSDALHVPFITPSFP--TNDL-DDGNQFVLQMRPS---LIQALVDLIEHYGWRKVVYLYDSDR-G--LLRLQQLLD 147 (382)
T ss_pred HHHHHHhcCCCCeEecCCC--cccC-CCCCcEEEEeccc---hhHHHHHHHHhcCCeEEEEEECCCc-c--hHHHHHHHH
Confidence 9999999999999999988 5555 3467899999986 3468999999999999999998775 4 556677778
Q ss_pred HHhcCCCeEEEEE-eecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 192 ALQNVSSSEIQSR-LVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 192 ~l~~~g~~~v~~~-~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
.+++.| .++... ..+.... ...|++.+|++|++.++|+||+ .++.+++..++++|+++||.+++|+||+++..
T Consensus 148 ~~~~~g-~~i~v~~~~~~~~~----~~~d~~~~L~~ik~~~~~~iil-~~~~~~~~~i~~qa~~~gm~~~~y~~i~~~~~ 221 (382)
T cd06380 148 YLREKD-NKWQVTARRVDNVT----DEEEFLRLLEDLDRRKEKRIVL-DCESERLNKILEQIVDVGKNRKGYHYILANLG 221 (382)
T ss_pred HHhccC-CceEEEEEEecCCC----cHHHHHHHHHHhhcccceEEEE-ECCHHHHHHHHHHHHHhhhcccceEEEEccCC
Confidence 888777 433322 2222211 3479999999999999999999 99999999999999999999999999998764
Q ss_pred hhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc--
Q 008863 271 ANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY-- 348 (550)
Q Consensus 271 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~-- 348 (550)
....++. .......+..++..... .++..++|.++|++.+...++......+..+++++||||+++++|++++..
T Consensus 222 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~aa~aYDav~~~a~Al~~~~~~~ 298 (382)
T cd06380 222 FDDIDLS--KFLFGGVNITGFQLVDN-TNPTVQKFLQRWKKLDPREWPGAGTSPIKYTAALAHDAVLVMAEAFRSLRRQR 298 (382)
T ss_pred cccccHH--HhccCceeeEEEeccCC-CCHHHHHHHHHHHhcCccccCcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4332221 01111123445544333 347899999999887754433222345677899999999999999998752
Q ss_pred -----------------C-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCC
Q 008863 349 -----------------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPN 404 (550)
Q Consensus 349 -----------------~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~ 404 (550)
| |.+|..|+++|++++|+|+||+++||++|+|.+..++|++++++++++||+|++.
T Consensus 299 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~i~~~l~~~~~~G~tG~i~Fd~~G~~~~~~~~i~~~~~~~~~~vg~w~~~ 378 (382)
T cd06380 299 GSGRHRIDISRRGNGGDCLANPAVPWEHGIDIERALKKVQFEGLTGNVQFDEFGQRTNYTLDVVELKTRGLRKVGYWNED 378 (382)
T ss_pred cccccccccccCCCCCcCCCCCCCCccchHHHHHHHHhcccCCcccceEECCCCCcccccEEEEEecCCCceEEEEECCC
Confidence 1 4579999999999999999999999999999889999999999999999999998
Q ss_pred CCC
Q 008863 405 FGF 407 (550)
Q Consensus 405 ~g~ 407 (550)
.|+
T Consensus 379 ~g~ 381 (382)
T cd06380 379 DGL 381 (382)
T ss_pred cCc
Confidence 775
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita |
| >cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=353.04 Aligned_cols=338 Identities=39% Similarity=0.691 Sum_probs=296.2
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
|||+++|++ +..|.....|+++|+++||+++ +|++|+++++|+++++..+++.+++|+.+++|.+||||.+|..+.
T Consensus 1 ~IG~~~p~sGa~~G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~~~~ 80 (350)
T cd06366 1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALDLLENKPVVAIIGPQCSSVAE 80 (350)
T ss_pred CEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecCCCCCHHHHHHHHHHHhccCCceEEECCCcHHHHH
Confidence 699999999 7789999999999999999997 589999999999999999999999999878999999999999999
Q ss_pred HHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
+++++++.+++|+|+++++ ++.+ ++..+||+||+.|++..++.++++++++++|+++++|+++++|| ....+.++
T Consensus 81 a~~~~~~~~~ip~i~~~~~--~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~~g--~~~~~~~~ 156 (350)
T cd06366 81 FVAEVANEWNVPVLSFAAT--SPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDDYG--SGGLPDLV 156 (350)
T ss_pred HHHHHhhcCCeeEEeccCC--CccccccccCCceEEcccchHhHHHHHHHHHHHCCCcEEEEEEEcCccc--chhHHHHH
Confidence 9999999999999999988 6665 56778999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
+.+++.| ++|+....++... ...|+.++++++++.++|+|++ ++...++..++++++++|+.++.|+|+.++.+
T Consensus 157 ~~~~~~g-~~v~~~~~~~~~~----~~~d~~~~l~~i~~~~~dvvi~-~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 230 (350)
T cd06366 157 DALQEAG-IEISYRAAFPPSA----NDDDITDALKKLKEKDSRVIVV-HFSPDLARRVFCEAYKLGMMGKGYVWILTDWL 230 (350)
T ss_pred HHHHHcC-CEEEEEeccCCCC----ChhHHHHHHHHHhcCCCeEEEE-ECChHHHHHHHHHHHHcCCcCCCEEEEECcch
Confidence 9999999 9999888777642 2479999999999999999999 99999999999999999999888999998765
Q ss_pred hhhc----ccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 271 ANAL----DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 271 ~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
.... ...........+|++++..+.+..++..++|.++|++++....+. ...|+.+++++||++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~--~~~p~~~a~~~YDav~~-------- 300 (350)
T cd06366 231 SSNWWSSSDCTDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPE--LTEPSIYALYAYDAVWA-------- 300 (350)
T ss_pred hhhhccCCCCChHHHHHhhceEEEEeecccccCccHHHHHHHHHHHhcccCcC--cCCCCcccchhhhheee--------
Confidence 5432 112223446678988888776553578999999999988532111 12577889999999998
Q ss_pred ccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCc
Q 008863 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (550)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~ 408 (550)
+.+|+|++|+++||++|++.+..|+++++.++++++||.|++..|+.
T Consensus 301 ---------------~~~~~G~~G~v~fd~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~ 347 (350)
T cd06366 301 ---------------STNFNGLSGPVQFDGGRRLASPAFEIINIIGKGYRKIGFWSSESGLS 347 (350)
T ss_pred ---------------eceEEeeeeeEEEcCCCccCCcceEEEEecCCceEEEEEEeCCCCcc
Confidence 45899999999999999998899999999999999999999887765
|
Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. |
| >cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-44 Score=354.55 Aligned_cols=316 Identities=20% Similarity=0.341 Sum_probs=262.3
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHH-HhhhcCCeEEEEc-CC-C
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQ-ELINKEKVKVIAG-ME-T 106 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~-~li~~~~v~aiiG-~~-~ 106 (550)
.+|+||+++|.+ ..+.|+++|++++|++. ++.++.....+...++..+...+| +|++ ++|.+|+| +. +
T Consensus 18 ~~i~IG~i~~~~-----~~~~~~~~Ai~~~N~~~~~~~~~~l~~~~i~~~~~~~~~a~~~~~~Li~-~~V~aii~~~~~s 91 (377)
T cd06379 18 KTVNIGAVLSNK-----KHEQEFKEAVNAANVERHGSRKIKLNATTITHDPNPIQTALSVCEQLIS-NQVYAVIVSHPPT 91 (377)
T ss_pred cEEEEeEEecch-----hHHHHHHHHHHHHhhhhcCCcceeeccceEeecCChhhHHHHHHHHHhh-cceEEEEEeCCCC
Confidence 579999999843 67899999999999954 233343332222356777666666 4666 69999974 33 3
Q ss_pred hH---HHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCc
Q 008863 107 WE---ETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (550)
Q Consensus 107 s~---~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~ 182 (550)
+. .+.+++.+|+.++||+|+++++ ++.+ ++..+||+||+.|++..++.++++++++++|++|++||++++||
T Consensus 92 s~~~~~~~~v~~~~~~~~iP~Is~~a~--~~~ls~~~~~~~~~R~~psd~~~~~a~~~~l~~~~w~~vaii~~~~~~g-- 167 (377)
T cd06379 92 SNDHLTPTSVSYTAGFYRIPVVGISTR--DSIFSDKNIHLSFLRTVPPYSHQADVWLEMLRSFKWNKVILLVSDDHEG-- 167 (377)
T ss_pred CcccccHHHHHHHhhCCCCcEEecccC--CccccCccccccEEEecCCHHHHHHHHHHHHHHcCCeEEEEEEEcCcch--
Confidence 32 4667888999999999999887 6654 44568999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCe----EEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 183 SGKLALLAEALQNVSSS----EIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~----~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
....+.+++.+++.| + ++...+.++. ...|+...++++++.++|+|++ .++.+++..++++++++||+
T Consensus 168 ~~~~~~~~~~~~~~g-~~~~~~v~~~~~~~~------~~~d~~~~l~~ik~~~~~vIvl-~~~~~~~~~l~~qa~~~g~~ 239 (377)
T cd06379 168 RAAQKRFETLLEERE-IEFKIKVEKVVEFEP------GEKNVTSLLQEAKELTSRVILL-SASEDDAAVIYRNAGMLNMT 239 (377)
T ss_pred hHHHHHHHHHHHhcC-CccceeeeEEEecCC------chhhHHHHHHHHhhcCCeEEEE-EcCHHHHHHHHHHHHHcCCC
Confidence 999999999999999 9 8877766655 3478999999999999999999 99999999999999999999
Q ss_pred CCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHH
Q 008863 259 GKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKI 338 (550)
Q Consensus 259 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~ 338 (550)
+++|+||.++.+... .....|+++++.... ..+++++||||++
T Consensus 240 ~~~~~wi~t~~~~~~--------~~~~~g~~g~~~~~~-----------------------------~~~~~~~yDAV~~ 282 (377)
T cd06379 240 GEGYVWIVSEQAGAA--------RNAPDGVLGLQLING-----------------------------KNESSHIRDAVAV 282 (377)
T ss_pred CCCEEEEEecccccc--------ccCCCceEEEEECCC-----------------------------CCHHHHHHHHHHH
Confidence 999999999987432 134578888875321 1246789999999
Q ss_pred HHHHHHhhccC----------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEe
Q 008863 339 ITEAIGRLNYN----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWL 402 (550)
Q Consensus 339 ~a~Al~~~~~~----------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~ 402 (550)
+++|++++..+ |..|..+.++|++++|+|+||+|.||++|+|.++.|+|+++++.++++||.|+
T Consensus 283 ~A~Al~~~~~~~~~~~~~~~c~~~~~~~~~g~~l~~~l~~v~f~G~tg~i~Fd~~Gd~~~~~~~I~~~~~~~~~~VG~w~ 362 (377)
T cd06379 283 LASAIQELFEKENITEPPRECVGNTVIWETGPLFKRALMSSKYPGETGRVEFNDDGDRKFANYDIMNIQNRKLVQVGLYN 362 (377)
T ss_pred HHHHHHHHHcCCCCCCCCccccCCCCCCcchHHHHHHHHhCCcCCccCceEECCCCCccCccEEEEEecCCCceEeeEEc
Confidence 99999987421 45789999999999999999999999999998889999999999999999998
Q ss_pred C
Q 008863 403 P 403 (550)
Q Consensus 403 ~ 403 (550)
+
T Consensus 363 ~ 363 (377)
T cd06379 363 G 363 (377)
T ss_pred C
Confidence 6
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore |
| >cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=353.64 Aligned_cols=321 Identities=18% Similarity=0.280 Sum_probs=278.0
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH-
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE- 109 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~- 109 (550)
.|+||+++|.++ .+.+++.|+..+|.+. .+.+++++..|+.+||..+..++|+++.+++|.+|+||.+|..
T Consensus 2 ~~~ig~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~l~~~d~~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~~ 76 (362)
T cd06367 2 TVNIGVVLSGSS-----SEPAFRDAVTAANFRHNLPYNLSLEAVAVSNDTDPISLLLSVCDLLVVQVVAGVVFSDPTDEE 76 (362)
T ss_pred ceEEEEEecCCc-----chhhHHHHhhhccccccCCcccceEEEEEecCCCHHHHHHHHHHHhcccceEEEEecCCCCcc
Confidence 589999999882 3488888888888765 5899999999999999999999999998789999999999988
Q ss_pred --HHHHHHhhccCCccEEeccCCCCCCcc--cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 110 --TAVVAEIASRVQVPILSFAAPAVTPLS--MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 110 --~~~v~~~~~~~~iP~is~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
+.+++.+|+.++||+|+++++ ++.+ ++..+||+||+.|++..+++++++++++|+|++|++||+++++| +..
T Consensus 77 ~~~~~~~~v~~~~~iP~Is~~~~--~~~~~s~~~~~~~~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g--~~~ 152 (362)
T cd06367 77 AVAQILDFTSAQTRIPVVGISGR--ESIFMSDKNIHSLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGY--RDF 152 (362)
T ss_pred chhhhhhhhhhhhcCcEEEeecc--ccccccCCCcccceEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCccc--HHH
Confidence 899999999999999999888 5554 45688999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcCCCeE--EEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEE
Q 008863 186 LALLAEALQNVSSSE--IQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~--v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (550)
.+.+++.+++.| ++ +.....++... ..++...+.++++.++++|++ .|+...+..++++|.++||++++|+
T Consensus 153 ~~~l~~~l~~~g-~~~~i~~~~~~~~~~-----~~~~~~~l~~l~~~~~~vivl-~~~~~~~~~il~~a~~~g~~~~~~~ 225 (362)
T cd06367 153 LDRVETTLEESF-VGWEFQLVLTLDLSD-----DDGDARLLRQLKKLESRVILL-YCSKEEAERIFEAAASLGLTGPGYV 225 (362)
T ss_pred HHHHHHHHHhcc-cceeeeeeEEeccCC-----CcchHHHHHHHHhcCCcEEEE-eCCHHHHHHHHHHHHHcCCCCCCcE
Confidence 999999999999 88 66655555432 227888899999999999999 9999999999999999999999999
Q ss_pred EEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHH
Q 008863 264 WIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI 343 (550)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al 343 (550)
||+++.+..... .......|++++++... ..+.+++||||+++++|+
T Consensus 226 wI~~~~~~~~~~----~~~~~~~G~~g~~~~~~-----------------------------~~~~~~~~Dav~~~a~Al 272 (362)
T cd06367 226 WIVGELALGSGL----APEGLPVGLLGVGLDTW-----------------------------YSLEARVRDAVAIVARAA 272 (362)
T ss_pred EEECcccccccC----CccCCCCeeEEEEeccc-----------------------------ccHHHHHHHHHHHHHHHH
Confidence 999999864211 12255678888875311 234778999999999999
Q ss_pred HhhccC------------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEEEEEeC
Q 008863 344 GRLNYN------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLP 403 (550)
Q Consensus 344 ~~~~~~------------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~ 403 (550)
+++..+ |.+|..|.++|++++|.|++|+|.||++|+|.++.|+|++++ +.+|++||.|++
T Consensus 273 ~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~l~~~l~~~~f~G~tg~v~F~~~G~~~~~~~~I~~l~~~~~~~~VG~W~~ 351 (362)
T cd06367 273 ESLLRDKGALPEPPVNCYDTANKRESSGQYLARFLMNVTFDGETGDVSFNEDGYLSNPKLVIINLRRNRKWERVGSWEN 351 (362)
T ss_pred HHHHHhcCCCCCCCCCcCCCCCCCCCchHHHHHHHhcccccCCCCceeECCCcccccceEEEEEecCCCcceEEEEEcC
Confidence 987431 467889999999999999999999999999988999999999 889999999985
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits |
| >cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=346.71 Aligned_cols=356 Identities=17% Similarity=0.271 Sum_probs=274.1
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEE--EEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLS--LQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~--~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||+||+.++. ..+.||++|++++|++. ++++|. +...|+ +|++.+...+|++++ .+|.|||||.++..+
T Consensus 1 ~IGaif~~~s~---~~~~Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~-~d~f~a~~~~c~l~~-~gv~ai~Gp~~~~~~ 75 (400)
T cd06391 1 HIGAIFDESAK---KDDEVFRMAVADLNQNNEILQTEKITVSVTFVDG-NNPFQAVQEACELMN-QGILALVSSIGCTSA 75 (400)
T ss_pred CcceeeccCCc---hHHHHHHHHHHHhcCCccccCCCcceEEEEEeeC-CCcHHHHHHHHHHHh-CCeEEEECCCcchHH
Confidence 48999999863 44579999999999876 677555 477788 499999999999996 699999999888888
Q ss_pred HHHHHhhccCCccEEec----cCCC-CC--Cccc--CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCC
Q 008863 111 AVVAEIASRVQVPILSF----AAPA-VT--PLSM--SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG 181 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~----~~~~-~~--~~~~--~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~ 181 (550)
..++++|+.++||+|++ +++. ++ +... +..||+++| |+ ..+.+|+++++++|+|++++++++ +++|
T Consensus 76 ~~v~~~~~~~~vP~i~~~~~~~~t~~~~~~~~~~~~~~~y~~~~r--p~-~~~~~ai~~li~~f~W~~v~i~~d-~~~~- 150 (400)
T cd06391 76 GSLQSLADAMHIPHLFIQRSTAGTPRSSCGLTRSNRNDDYTLSVR--PP-VYLNDVILRVVTEYAWQKFIIFYD-TDYD- 150 (400)
T ss_pred HHHHHHhccCcCCeEEeecccccCccccCCCCCCCCcccceEEec--Ch-HHHHHHHHHHHHHcCCcEEEEEEe-CCcc-
Confidence 99999999999999984 3320 00 2222 445666655 65 678899999999999999998765 5567
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHH-HHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRG-ELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~-~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
...++.+.+.+.+.+ +||.... +.... ...-...++. .+++|++ .+.++||+ +|+.+.+..++++|.++||+
T Consensus 151 -~~~l~~l~~~~~~~~-i~I~~~~-~~~~~-~~~~~~~~~~~~~~~l~~~~~~~rviVl-~~~~~~~~~ll~~a~~~gm~ 225 (400)
T cd06391 151 -IRGIQEFLDKVSQQG-MDVALQK-VENNI-NKMITGLFRTMRIEELNRYRDTLRRAIL-VMNPATAKSFITEVVETNLV 225 (400)
T ss_pred -HHHHHHHHHHHHHcC-CeEEEEe-cCcch-hhhhHHHHHHHHHHHHHhhcccccEEEE-ECCcHHHHHHHHHHHHcCCC
Confidence 788899999999999 9998643 22111 0000012222 4566665 56799999 99999999999999999999
Q ss_pred CCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccC--CCCC-CCCCCchhhHHhHH
Q 008863 259 GKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEY--PEED-HFHPSIHALRAHDS 335 (550)
Q Consensus 259 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~-~~~~~~~~~~~yDa 335 (550)
+++|+||++++.....++.+ .....+.|..++.++.+.. ....+|..+|..++.... +... ...+..+++++|||
T Consensus 226 ~~~y~wi~t~~~~~~~dl~~-~~~~~~~~v~~~r~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~alayDa 303 (400)
T cd06391 226 AFDCHWIIINEEISDMDVQE-LVRRSIGRLTIIRQTFPLP-QNISQRCFRGNHRISSSLCDPKDPFAQMMEISNLYIYDT 303 (400)
T ss_pred CCCeEEEEeCccccccccch-HHhcccceEEEeccCCchH-HHHHHHHHHHhhhccccccCccccccccccchhhHHHHH
Confidence 99999999999887777533 2233445566677655443 567777777777653222 1111 12356889999999
Q ss_pred HHHHHHHHHhhcc-----------C-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-----C
Q 008863 336 IKIITEAIGRLNY-----------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-----G 392 (550)
Q Consensus 336 v~~~a~Al~~~~~-----------~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-----~ 392 (550)
|+++|+|++++.. | |..|..|+++|++++|+|+||+++|+++|+|.++.|+|+++. +
T Consensus 304 V~~~A~A~~~l~~~~~~~~~~~~~c~~~~~~~w~~G~~ll~~i~~~~f~GlTG~i~f~~~g~r~~~~~dIin~~~~~~~~ 383 (400)
T cd06391 304 VLLLANAFHKKLEDRKWHSMASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGELEFNENGGNPNVHFEILGTNYGEDLG 383 (400)
T ss_pred HHHHHHHHHHHHhhccccCCCCcccccCCCCCCCChHHHHHHHHhcCcccceeceEECCCCCccCCceEEEEeeccccCC
Confidence 9999999997631 2 678999999999999999999999999999999999999996 7
Q ss_pred CeeeEEEEEeCCCCCc
Q 008863 393 KKYKELDFWLPNFGFS 408 (550)
Q Consensus 393 ~~~~~vG~w~~~~g~~ 408 (550)
.++++||+|++..|++
T Consensus 384 ~g~rkiG~Ws~~~gl~ 399 (400)
T cd06391 384 RGVRKLGCWNPITGLN 399 (400)
T ss_pred CcceEEEEEcCCcCCC
Confidence 8999999999988864
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a |
| >cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=345.29 Aligned_cols=347 Identities=15% Similarity=0.225 Sum_probs=282.6
Q ss_pred EEEEEecC---CccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 37 IGAIVDAN---SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 37 IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|=+|+|.+ .........|+++|+++||+++ +|++|+++++|++|++..+...+..++. ++|.|||||.|+..+
T Consensus 2 ~~~l~p~~~~~~~~~~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~~~~~~~~~~~l~~-~~v~aiiGp~~s~~~ 80 (387)
T cd06386 2 VLVLLPQNNSYLFSSARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCGNEALFSLVDRSCA-RKPDLILGPVCEYAA 80 (387)
T ss_pred cEEECCCCCCcceehhhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCCchHHHHHHHHHHh-hCCCEEECCCCccHH
Confidence 34566755 3445788899999999999976 6899999999999998767777777665 699999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcc-c-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh---
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLS-M-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK--- 185 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~-~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~--- 185 (550)
.+++++|+.++||+|+++++ ++.. + +..||++||+.|++..++.++++++++|+|++|++||++++++ +..
T Consensus 81 ~~va~ia~~~~iP~Is~~a~--~~~~s~~~~~yp~~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~~~~~~--~~~~~~ 156 (387)
T cd06386 81 APVARLASHWNIPMISAGAL--AAGFSHKKSEYSHLTRVAPSYVKMGETFSALFERFHWRSALLVYEDDKQE--RNCYFT 156 (387)
T ss_pred HHHHHHHHhCCCcEEccccC--chhhccCcccCCeeEEecCchHHHHHHHHHHHHhCCCeEEEEEEEcCCCC--ccceeh
Confidence 99999999999999999888 5664 3 4568999999999999999999999999999999999998887 765
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.+.+.+.+++.| ++|......+. ...++..+++++++.+ |+||+ +++.+.+..++++|+++||++++|+||
T Consensus 157 ~~~l~~~~~~~g-i~v~~~~~~~~------~~~d~~~~l~~ik~~~-rvii~-~~~~~~~~~ll~~A~~~gm~~~~yv~i 227 (387)
T cd06386 157 LEGVHHVFQEEG-YHMSIYPFDET------KDLDLDEIIRAIQASE-RVVIM-CAGADTIRSIMLAAHRRGLTSGDYIFF 227 (387)
T ss_pred HHHHHHHHHhcC-ceEEEEecCCC------CcccHHHHHHHHHhcC-cEEEE-ecCHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 889999999999 99987554332 2368999999999877 99999 999999999999999999999999999
Q ss_pred Eeccchhh-c--------ccCC---hhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCC-CCCCchhhHH
Q 008863 266 VTNTVANA-L--------DSLN---TTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDH-FHPSIHALRA 332 (550)
Q Consensus 266 ~~~~~~~~-~--------~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 332 (550)
..+...+. . +..+ ....+.+.|+..+.++ ++.+++|.+++++++... +.+.. ..++.+++++
T Consensus 228 ~~d~~~~~~~~~~~w~~~~~~~~~~~~a~~~~~~v~~~~~~----~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~aa~~ 302 (387)
T cd06386 228 NIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLNTVTLLRTV----KPEFEKFSMEVKSSVEKA-GDLNDCDYVNMFVEGF 302 (387)
T ss_pred EEecccccccCCCCCccCCCcCHHHHHHHHhheEEeccCCC----ChHHHHHHHHHHHHHHhC-CCCcccccchHHHHHH
Confidence 99765311 0 0011 1122334454443332 378899999998766542 22322 2455889999
Q ss_pred hHHHHHHHHHHHhh---ccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC---CeeeEEEEEeC
Q 008863 333 HDSIKIITEAIGRL---NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG---KKYKELDFWLP 403 (550)
Q Consensus 333 yDav~~~a~Al~~~---~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~---~~~~~vG~w~~ 403 (550)
|||++++++|++++ +..+.+|..|+++|++++|+|+||+++||++|+|. ..|.++.+++ ++++.||.|..
T Consensus 303 yDav~l~A~Al~~~~~~g~~~~~g~~l~~~l~~~~f~G~tG~v~~d~~g~r~-~~~~v~~~~~~~~~~~~~~~~~~~ 378 (387)
T cd06386 303 HDAILLYALALHEVLKNGYSKKDGTKITQRMWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTYEVVGNYFG 378 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhCCceeeccccEEECCCCCcc-ccEEEEEccCCCCccEEEEeEEcc
Confidence 99999999999998 32246899999999999999999999999999996 6999999964 78999999975
|
Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation. |
| >cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=341.02 Aligned_cols=325 Identities=17% Similarity=0.302 Sum_probs=256.3
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHH-HHHHHHHHhhhcCCeEEEEcCCChHH-H
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPF-QAATAAQELINKEKVKVIAGMETWEE-T 110 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~-~a~~~~~~li~~~~v~aiiG~~~s~~-~ 110 (550)
+||+||+..+..|.....|+++|++++|+++ ++.+|++++.|...++. .+..++|++++ ++|.|||||.+|.. +
T Consensus 1 ~iG~i~d~~s~~G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d~~f~~~~~~~~~l~-~gV~AIiGp~ss~~~~ 79 (333)
T cd06394 1 RIAAILDDPMECGRGERLALALARERINRAPERLGKARVEVDIFELLRDSQYETTDTMCQILP-KGVVSVLGPSSSPASS 79 (333)
T ss_pred CceeeecCCccccHHHHHHHHHHHHHhccCccccCCceeEEEEeeccccChHHHHHHHHHHHh-cCeEEEECCCCchHHH
Confidence 5899999998899999999999999999986 34699999999888764 88889999996 69999999999975 5
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.+++++|+..+||+|++++.. +|.....++++ +++.|++..+.+|+++++++|+|++|++||+++++- ..|+
T Consensus 80 ~~v~~i~~~~~VP~Is~~~~~-~~~~~~~~~~~-i~l~P~~~~~~~Ai~dli~~~~W~~v~~iYe~d~~l------~~L~ 151 (333)
T cd06394 80 SIVSHICGEKEIPHFKVGPEE-TPKLQYLRFAS-VNLHPSNEDISVAVAGILNSFNYPTASLICAKAECL------LRLE 151 (333)
T ss_pred HHHHHHhhccCCceEEecccc-CcccccccceE-EEecCCHHHHHHHHHHHHHhcCCCEEEEEEeCcHHH------HHHH
Confidence 699999999999999987651 13233334444 899999999999999999999999999999998853 3344
Q ss_pred HHHhcCCC--eEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 191 EALQNVSS--SEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 191 ~~l~~~g~--~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+.++.... ..+... .. ..+.|++++|++|++.++++||+ +|+.+.+..++++|+++||+.+.|+|++++
T Consensus 152 ~~l~~~~~~~~~i~~~----~~----~~~~d~~~~L~~ik~~~~~~iVv-~~~~~~a~~il~qa~~lGm~~~~y~~i~T~ 222 (333)
T cd06394 152 ELLRQFLISKETLSVR----ML----DDSRDPTPLLKEIRDDKTATIII-DANASMSHTILLKASELGMTSAFYKYILTT 222 (333)
T ss_pred HHHHhhcccCCceeeE----Ec----cCcccHHHHHHHHHhcCCCEEEE-ECChHHHHHHHHHHHHcCCCCCceEEEEec
Confidence 44443330 222211 11 13468999999999999999999 999999999999999999999999999998
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
......++... ......+.+|+...+ .++..++|.++|+++|.+......-......++++||||+++
T Consensus 223 l~~~~~~L~~~--~~~~~niTgF~l~d~-~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~al~~D~v~~~--------- 290 (333)
T cd06394 223 MDFPLLRLDSI--VDDRSNILGFSMFNQ-SHAFYQEFIRSLNQSWRENCDHSPYTGPALSSALLFDAVYAV--------- 290 (333)
T ss_pred CCcccccHHHh--hcCCcceEEEEeecC-CcHHHHHHHHHHHHhhhhhcccccCCCcccceeeecceEEEE---------
Confidence 86543332211 111223456665433 348999999999887743221111112235789999999998
Q ss_pred CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCc
Q 008863 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~ 408 (550)
|+||+|+||+.|+|.++.++|++++..+.++||+|++..|++
T Consensus 291 ------------------glTg~i~f~~~g~R~~~~l~v~~l~~~g~~kig~W~~~~gl~ 332 (333)
T cd06394 291 ------------------GLTGRIEFNSKGQRSNYTLKILQKTRSGFRQIGQWHSNETLS 332 (333)
T ss_pred ------------------eeecceecCCCCcCcccEEEEEEecCCcceEEEEEeCCCCcC
Confidence 999999999999999999999999999999999999988865
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act |
| >cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=341.79 Aligned_cols=356 Identities=12% Similarity=0.159 Sum_probs=280.2
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
+||++.|.+ ...+.....|+++|+++||+++ +|++|++++.|++|++..++..+++++.+++|.+||||.||..
T Consensus 1 ~vg~~~p~~~~~~~~~~~~~~a~~lAi~~IN~~~~~l~~~~l~~~~~D~~~~~~~a~~~~~~l~~~~~v~aiiGp~~S~~ 80 (391)
T cd06372 1 TVGFQAPWNISHPFSAQRLGAALQIAMDKVNSDPVYLGNYSMEFTYTNSTCSAKESLAGFIDQVQKEHISALFGPACPEA 80 (391)
T ss_pred CceeeccccccCchhhhhHHHHHHHHHHHHhcCCCCCCCceEEEEEecCCCCccHHHHHHHHHHHhcCceEEECCCCCcH
Confidence 589999976 3356677789999999999997 5799999999999999999999999998789999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC---CCCcchh
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV---YGGDSGK 185 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~---~g~~~~~ 185 (550)
+.+++++++.+++|+|+++++ ++.+ ++..||+++|+.|++..++.++++++++|+|++|++||++++ ++.....
T Consensus 81 ~~av~~va~~~~iP~is~~s~--s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~~~~~~~~~~~~~~ 158 (391)
T cd06372 81 AEVTGLLASQWNIPMFGFVGQ--TAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGGSSRDSSWDEVDEL 158 (391)
T ss_pred HHHHHHHHhccCccEEEeecC--CccccccccCCceEEecCchhhHHHHHHHHHHHCCCeEEEEEEeccccchhhhHHHH
Confidence 999999999999999999887 6664 456789999999999999999999999999999999996542 2200112
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.+.+.+.++ .+ +++...+.+... ..++...+.+.++.++|+||+ +++.+.+..++++|.++||.++.|+||
T Consensus 159 ~~~~~~~~~-~~-~~i~~~~~~~~~------~~d~~~~~l~~~~~~~~vii~-~~~~~~~~~i~~~a~~~g~~~~~y~~i 229 (391)
T cd06372 159 WKAVENQLK-FH-FNITATVRYSSS------NPDLLQEKLRYISSVARVIIL-ICSSEDAKAILQAAEKLGLMKGKFVFF 229 (391)
T ss_pred HHHHHHHHh-hC-EEEEEEEecCCC------ChHHHHHHHHhhhccceEEEE-EcChHHHHHHHHHHHHcCCCCCCEEEE
Confidence 334455554 57 888887766553 256666555555679999999 999999999999999999998889999
Q ss_pred Eecc-----chhhccc-CChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCC---CCCCCchhhHHhHHH
Q 008863 266 VTNT-----VANALDS-LNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED---HFHPSIHALRAHDSI 336 (550)
Q Consensus 266 ~~~~-----~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~yDav 336 (550)
.+.. |...... ......+..+|++++........+...+|.++|++++......+. ......+++++||||
T Consensus 230 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~~~~~~~~a~~~yDav 309 (391)
T cd06372 230 LLQQFEDNFWKEVLTDDQVQHLPKVYESVFLIAPSSYGGYSGGYEFRKQVYQKLKRPPFQSSLSSEEQVSPYSAYLHDAV 309 (391)
T ss_pred EehhhcCccccccCCCcchHHHHHHHhhEEEEecCCCCCCcchhHHHHHHHHHHhcCCccccccccccchHHHHHHHHHH
Confidence 9532 3211110 011223456787777665433345677898888887753322111 113457899999999
Q ss_pred HHHHHHHHhhccC---CCCHHHHHHHHH---hCcccccceeEEEeCCCCCCCCceEEEEeeC----CeeeEEEEEeC
Q 008863 337 KIITEAIGRLNYN---ISSPEMLLRQML---SSDFSGLSGKIRFKDGELLNADTLRIVNVVG----KKYKELDFWLP 403 (550)
Q Consensus 337 ~~~a~Al~~~~~~---~~~~~~l~~~l~---~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~----~~~~~vG~w~~ 403 (550)
+++++|++++..+ +.+|..+.+.|+ +++|+|+||+|.||++|+|. ..|.|+++++ ..+++||+|+.
T Consensus 310 ~~~A~Al~~~~~~g~~~~~g~~l~~~l~~~~~~~f~G~tG~v~fd~~G~r~-~~y~i~~~~~~~~~~~~~~vg~~~~ 385 (391)
T cd06372 310 LLYALAVKEMLKAGKDFRNGRQLVSTLRGANQVELQGITGLVLLDEQGKRQ-MDYSVYALQKSGNSSLFLPFLHYDS 385 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHhhccCceEeccceeEEECCCCCcc-eeEEEEeccccCCccceeeEEEecc
Confidence 9999999996543 568999999999 68999999999999999994 8999999975 34899999986
|
This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle. |
| >cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=341.56 Aligned_cols=340 Identities=20% Similarity=0.292 Sum_probs=281.0
Q ss_pred CCcEEEEEEEecCC---------------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHH
Q 008863 32 EEVTKIGAIVDANS---------------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAAT 87 (550)
Q Consensus 32 ~~~i~IG~i~~~~~---------------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~ 87 (550)
++.+.||++||.+. ..|.....|+++|+++||+++ +|++|+++++|+++ +..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~~~-~~~a~~ 82 (410)
T cd06363 4 PGDYLLGGLFPLHYATSALPHRRPEPLDCSSYRFNLSGYRLFQAMRFAVEEINNSTSLLPGVTLGYEIFDHCS-DSANFP 82 (410)
T ss_pred CCCEEEEEEeECcccccccccCCCCCccCccCccCHHHHHHHHHHHHHHHHHhCCCccCCCCeeceEEEecCC-cHHHHH
Confidence 46799999999872 356677899999999999998 58999999999977 667999
Q ss_pred HHHHhhhc---------------CCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCc
Q 008863 88 AAQELINK---------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASND 151 (550)
Q Consensus 88 ~~~~li~~---------------~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~ 151 (550)
.+.+|+.+ ++|.+||||.+|..+.+++++++.+++|+|+++++ ++.++ +..+||+||+.|++
T Consensus 83 ~~~~li~~~~~~~~~~c~~~~~~~~V~aIiGp~~S~~~~av~~i~~~~~vp~is~~~~--~~~lt~~~~~~~~fr~~~~~ 160 (410)
T cd06363 83 PTLSLLSVNGSRIEPQCNYTNYQPRVVAVIGPDSSTLALTVAPLFSFFLIPQISYGAS--SEVLSNKELYPSFLRTVPSD 160 (410)
T ss_pred HHHHHHhccCcccCcccccccCCCCeEEEECCCccHHHHHHHHHhccccccccccccc--CccccccccCCCeeEecCCc
Confidence 99998854 79999999999999999999999999999999988 66644 45789999999999
Q ss_pred HHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC
Q 008863 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ 231 (550)
Q Consensus 152 ~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~ 231 (550)
..++.++++++++++|++|++|+++++|| ....+.+++.+++.| +++.....++... ....|+..++++|+.++
T Consensus 161 ~~~~~al~~~l~~~~~k~vaii~~~~~~g--~~~~~~~~~~l~~~g-i~i~~~~~~~~~~---~~~~d~~~~l~~i~~~~ 234 (410)
T cd06363 161 KDQIEAMVQLLQEFGWNWVAFLGSDDEYG--RDGLQLFSELIANTG-ICIAYQGLIPLDT---DPETDYQQILKQINQTK 234 (410)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEeCChhH--HHHHHHHHHHHHHCC-eEEEEEEEecCCC---chHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999 999999999999999 9999887776431 13579999999999999
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHH
Q 008863 232 SRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRR 311 (550)
Q Consensus 232 ~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~ 311 (550)
+|+|++ .+..+.+..++++++++|+.+. .|+.+..|................+.+++...... .+.+++|.++
T Consensus 235 ~dvIil-~~~~~~~~~il~qa~~~g~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~--- 307 (410)
T cd06363 235 VNVIVV-FASRQPAEAFFNSVIQQNLTGK--VWIASEAWSLNDELPSLPGIRNIGTVLGVAQQTVT-IPGFSDFIYS--- 307 (410)
T ss_pred CeEEEE-EcChHHHHHHHHHHHhcCCCCC--EEEEeCcccccccccCCccceeeccEEEEEeCCCC-CccHHHHHHH---
Confidence 999999 9999999999999999999764 88988776532111111111234455665544333 3666666654
Q ss_pred HhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccC---------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCC
Q 008863 312 NFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN---------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNA 382 (550)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~---------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~ 382 (550)
+++.+||||+++++|++++..+ ..+++.|+++|++++|.|++|++.||++|++.
T Consensus 308 ----------------~~~~~YDaV~~~a~Al~~a~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~g~i~fd~~G~~~- 370 (410)
T cd06363 308 ----------------FAFSVYAAVYAVAHALHNVLQCGSGGCPKRVPVYPWQLLEELKKVNFTLLGQTVRFDENGDPN- 370 (410)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHhccEEecCCcEEEeCCCCCCc-
Confidence 3567999999999999998322 23688999999999999999999999999864
Q ss_pred CceEEEEeeCC----eeeEEEEEeCC
Q 008863 383 DTLRIVNVVGK----KYKELDFWLPN 404 (550)
Q Consensus 383 ~~~~i~~~~~~----~~~~vG~w~~~ 404 (550)
..+.|++++.. ++++||+|++.
T Consensus 371 ~~~~i~~~~~~~~~~~~~~vG~~~~~ 396 (410)
T cd06363 371 FGYDIVVWWWDNSSGTFEEVGSYSFY 396 (410)
T ss_pred cceEEEEEEEcCCceeEEEEEEEECC
Confidence 68999999542 58999999874
|
Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors. |
| >cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=342.08 Aligned_cols=351 Identities=15% Similarity=0.217 Sum_probs=283.0
Q ss_pred EEEEEEEecCC----ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 35 TKIGAIVDANS----QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 35 i~IG~i~~~~~----~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
|+||+++|+++ ..|.....|+++|+++||+++ +|++|++++.|+++++..+++.+++++. ++|.+||||.+|
T Consensus 1 i~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~~~~~~a~~~~~~li~-~~v~aiiGp~~S 79 (404)
T cd06370 1 IKVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTHGDEVLSIRAVSDWWK-RGVVAFIGPECT 79 (404)
T ss_pred CeeEecccccCCccccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecCCChHHHHHHHHHHHh-cCceEEECCCch
Confidence 68999999985 458889999999999999997 5899999999999999999999999997 599999999987
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
.. +++.+++.++||+|+++++ ++.+ ++..||++||+.|++..++.++++++++++|+++++|+++++|| ....
T Consensus 80 ~~--~~a~i~~~~~iP~Is~~a~--~~~l~~~~~~~~f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~g--~~~~ 153 (404)
T cd06370 80 CT--TEARLAAAWNLPMISYKCD--EEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFNWNKFSVVYENDSKY--SSVF 153 (404)
T ss_pred hH--HHHHHHhhcCCcEEecccC--CccccccccCCCeEEcCCCHHHHHHHHHHHHHHCCCcEEEEEEecCccc--HHHH
Confidence 43 4567999999999999988 6664 45578999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCC-CChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSIS-DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLV-GKDSVW 264 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~-~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~-~~~~~~ 264 (550)
+.+++.+++.| ++|+..+.++...... ....++..++++++.. ++++|+ ++....+..++++|.++||. +.+|+|
T Consensus 154 ~~~~~~~~~~g-~~iv~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~-~~~~~~~~~~l~qa~~~g~~~~~~y~~ 230 (404)
T cd06370 154 ETLKEEAELRN-ITISHVEYYADFYPPDPIMDNPFEDIIQRTKET-TRIYVF-IGEANELRQFLMSMLDEGLLESGDYMV 230 (404)
T ss_pred HHHHHHHHHcC-CEEEEEEEECCCCCchhhhHHHHHHHHHhccCC-CEEEEE-EcCHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 99999999999 9999888776541000 0246888889888764 677777 67778899999999999998 688999
Q ss_pred EEeccchh------h------------cccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCC------
Q 008863 265 IVTNTVAN------A------------LDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEE------ 320 (550)
Q Consensus 265 i~~~~~~~------~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~------ 320 (550)
|..+.... . .........+.++|++.+..... ++...+|.+.|++.+....+.+
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 308 (404)
T cd06370 231 LGVDIEYYDRDSQDYYSLHRGFQSREYNRSDDEKALEAMKSVLIIVPTPV--SPDYDSFSIFVRKYNLEPPFNGDLGESE 308 (404)
T ss_pred EEEchhhccccchhhhhhhhhhccccccccccHHHHHHhHheEEEecCCC--CchHHHHHHHHHHhccCCCCcccccccc
Confidence 98653110 0 00111233456778777654333 4677888888887654322111
Q ss_pred CCCCCCchhhHHhHHHHHHHHHHHhhccC---CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeCCeee
Q 008863 321 DHFHPSIHALRAHDSIKIITEAIGRLNYN---ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVGKKYK 396 (550)
Q Consensus 321 ~~~~~~~~~~~~yDav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~~~~~ 396 (550)
....++.+++++|||++++++|++++..+ ..+|..|+++|++++|+|+|| ++.||++|+|. ..|.+++++++.|-
T Consensus 309 ~~~~~~~~aa~~yDAv~~~a~Al~~~~~~~~~~~~g~~i~~~l~~~~f~GvtG~~v~fd~~G~~~-~~y~v~~~~~~~~~ 387 (404)
T cd06370 309 LVLEIDIEAAYLYDAVMLYAKALDETLLEGGDIYNGTAIVSHILNRTYRSITGFDMYIDENGDAE-GNYSVLALQPIPPG 387 (404)
T ss_pred cccccceeeehhHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcccccccCceEEEcCCCCcc-cceEEEEecccccc
Confidence 23457788999999999999999998322 247999999999999999999 99999999984 89999999887554
Q ss_pred EE
Q 008863 397 EL 398 (550)
Q Consensus 397 ~v 398 (550)
.-
T Consensus 388 ~~ 389 (404)
T cd06370 388 DN 389 (404)
T ss_pred CC
Confidence 33
|
Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model. |
| >cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=338.70 Aligned_cols=358 Identities=18% Similarity=0.237 Sum_probs=304.2
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
|||+++|++ +..|.....|+++|+++||+.+ +|++|++++.|+++++..+.+.+.+++.+++|.+||||.+|..
T Consensus 1 kvG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~~~~~a~~~a~~l~~~~~v~aiiG~~~s~~ 80 (389)
T cd06352 1 TVGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECSESVALLAAVDLYWEHNVDAFIGPGCPYA 80 (389)
T ss_pred CeEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCCchhhhHHHHHHHHhhcCCcEEECCCChhH
Confidence 699999998 4578889999999999999997 5899999999999999999999999998789999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLA 187 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~ 187 (550)
+.++++++..+++|+|+++++ ++.. ++..+||+||+.|++..++.++++++++++|++++++++++. || ....+
T Consensus 81 ~~a~~~~~~~~~ip~Is~~~~--~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~~~g--~~~~~ 156 (389)
T cd06352 81 CAPVARLAAHWNIPMISWGCV--ALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYSDDSENC--FFTLE 156 (389)
T ss_pred HHHHHHHHhcCCCCEeccccc--ccccCccccCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEecCCccH--HHHHH
Confidence 999999999999999999888 5554 345789999999999999999999999999999999999887 88 89999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+.+.+++.| ++|.....++... ...|+..+++++++.. |+|++ ++...++..++++++++|+.++.|+|+.+
T Consensus 157 ~~~~~~~~~G-~~v~~~~~~~~~~----~~~d~~~~l~~i~~~~-~vii~-~~~~~~~~~~l~q~~~~g~~~~~~~~i~~ 229 (389)
T cd06352 157 ALEAALREFN-LTVSHVVFMEDNS----GAEDLLEILQDIKRRS-RIIIM-CGSSEDVRELLLAAHDLGLTSGDYVFILI 229 (389)
T ss_pred HHHHHHHhcC-CeEEEEEEecCCc----cchhHHHHHHHhhhcc-eEEEE-ECCHHHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 9999999999 9999888776631 1478999999999877 99998 88899999999999999999888999988
Q ss_pred ccchhhcc-----------cCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCC--CCCCCchhhHHhH
Q 008863 268 NTVANALD-----------SLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED--HFHPSIHALRAHD 334 (550)
Q Consensus 268 ~~~~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~yD 334 (550)
+.+..... .......+..+|++++..+.. .++.+++|.++|++++...++.|. ...++.+++.+||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~a~~~YD 308 (389)
T cd06352 230 DLFNYSLPYQNSYPWERGDGDDEKAKEAYDAVLTITLRPP-DNPEYEEFSEEVKEAAKRPPFNTDAEPEQVSPYAGYLYD 308 (389)
T ss_pred ehhccccccCCCCCcccCCcccHHHHHHHHhheEEEecCC-CCchHHHHHHHHHHHHhcccCccCCCccccchhhhhHHH
Confidence 76554321 111223455778887776555 458899999999998865443331 2346788999999
Q ss_pred HHHHHHHHHHhhccC---CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC--CeeeEEEEEeCCCC
Q 008863 335 SIKIITEAIGRLNYN---ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG--KKYKELDFWLPNFG 406 (550)
Q Consensus 335 av~~~a~Al~~~~~~---~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~--~~~~~vG~w~~~~g 406 (550)
|++++++|++++..+ +.++..+.+.+++++|.|++|+++||++|+|. ..|.|+++++ +++..++.+....+
T Consensus 309 av~~~a~Al~~~~~~~~~~~~~~~v~~~l~~~~f~g~~G~v~fd~~G~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~ 384 (389)
T cd06352 309 AVLLYAHALNETLAEGGDYNGGLIITRRMWNRTFSGITGPVTIDENGDRE-GDYSLLDLDSTGGQLEVVYLYDTSSG 384 (389)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHhcCcEEEeeeeeEEEcCCCCee-eeEEEEEecCCCceEEEEEeccccce
Confidence 999999999998543 24788999999999999999999999999996 7899999985 67888888776444
|
Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l |
| >cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=338.55 Aligned_cols=356 Identities=18% Similarity=0.234 Sum_probs=285.7
Q ss_pred EEEEEEecCC----ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCC----CHHHHHHHHHHhhhcCCeEEEEcC
Q 008863 36 KIGAIVDANS----QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNR----DPFQAATAAQELINKEKVKVIAGM 104 (550)
Q Consensus 36 ~IG~i~~~~~----~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~----~~~~a~~~~~~li~~~~v~aiiG~ 104 (550)
+||+++|.++ ..+.....|+++|+++||+++ +|++|+++++|+++ ++..+...+.+++.+++|.+||||
T Consensus 1 ~~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~~~~~~~~~a~~~a~~~~~~~~v~aiiGp 80 (396)
T cd06373 1 TLAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLYFQHKPDAFLGP 80 (396)
T ss_pred CeEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCCcCCCeEEEEEEecCccccccchhhhHHHHHHHHhccCCeEEECC
Confidence 5899999983 346678899999999999997 58999999999999 889999999998866899999999
Q ss_pred CChHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCC--
Q 008863 105 ETWEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG-- 181 (550)
Q Consensus 105 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~-- 181 (550)
.+|..+.+++++++.++||+|+++++ ++.++ +..|||+||+.|++..++.++++++++++|+++++|++++++++
T Consensus 81 ~~S~~~~av~~~~~~~~ip~Is~~as--~~~lt~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~~~~~~~~~ 158 (396)
T cd06373 81 GCEYAAAPVARFAAHWNVPVLTAGAP--AAGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFNWSRAALLYHDDKNDDRP 158 (396)
T ss_pred CccchhHHHHHHHhcCCCceECccCC--ccccccchhcCceeeccccHHHHHHHHHHHHHHcCCeEEEEEEECCCCCcch
Confidence 99999999999999999999999988 66654 46789999999999999999999999999999999999876520
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
-....+.+.+.+++.| +++.... +.... ...|+..+|+++++.. |+||+ ++....+..++++++++|+...+
T Consensus 159 ~~~~~~~~~~~~~~~g-~~v~~~~-~~~~~----~~~d~~~~l~~ik~~~-~vii~-~~~~~~~~~~~~qa~~~g~~~~~ 230 (396)
T cd06373 159 CYFTLEGVYTVLKEEN-ITVSDFP-FDEDK----ELDDYKELLRDISKKG-RVVIM-CASPDTVREIMLAAHRLGLTSGE 230 (396)
T ss_pred HHHHHHHHHHHHhhcC-ceeeEEe-ecCCc----cccCHHHHHHHHHhcC-cEEEE-ecCHHHHHHHHHHHHHcCCCCCc
Confidence 0335688888999889 8887543 33321 1368999999999865 99999 99999999999999999999999
Q ss_pred EEEEEeccchhhc----cc-------CChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCC-CCCCCchh
Q 008863 262 SVWIVTNTVANAL----DS-------LNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED-HFHPSIHA 329 (550)
Q Consensus 262 ~~~i~~~~~~~~~----~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~ 329 (550)
|+||..+...... .. ......+..++++.+...... .+.+++|.++|++++..++..+. ...+..++
T Consensus 231 yv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~a 309 (396)
T cd06373 231 YVFFNIDLFGSSLYGGGPWWWERGDEDDEKAKEAYQALMTITLREPD-NPEYKEFSLEVKERAKKKFNTTSDDSLVNFFA 309 (396)
T ss_pred EEEEEEccchhhhccCCCCcCCCCCcccHHHHHHHHHheEEecCCCC-ChHHHHHHHHHHHHhhhcCCCCcchhHHHHHH
Confidence 9999876542210 00 011222345577766654433 47888999999886543332111 12456788
Q ss_pred hHHhHHHHHHHHHHHhhccC---CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEe---eCCeeeEEEEEeC
Q 008863 330 LRAHDSIKIITEAIGRLNYN---ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV---VGKKYKELDFWLP 403 (550)
Q Consensus 330 ~~~yDav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~---~~~~~~~vG~w~~ 403 (550)
+.+|||++++++||+++..+ +.+|+.|+++|++++|+|++|+++||++|++. ..|.++.+ ++++++.+|.+++
T Consensus 310 ~~~YDav~~~a~Al~~~~~~~~~~~~~~~i~~~l~~~~f~G~tG~v~fd~~G~~~-~~~~v~~~~~~~~g~~~~~~~~~~ 388 (396)
T cd06373 310 GAFYDAVLLYALALNETLAEGGDPRDGTNITRRMWNRTFEGITGNVSIDENGDRE-SDFSLWDMTDTETGTFEVVANYNG 388 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHhcCCceecccCceEeecCCccc-ceeeeeeccCCCCceEEEEeeccc
Confidence 99999999999999987321 25899999999999999999999999999985 77888655 5789999999886
|
Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli |
| >cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=336.76 Aligned_cols=352 Identities=15% Similarity=0.186 Sum_probs=276.9
Q ss_pred EEEEEEecCCc---cc-hhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHH-----HHHHHHHhhhcCCeEEEEc
Q 008863 36 KIGAIVDANSQ---MG-KQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQ-----AATAAQELINKEKVKVIAG 103 (550)
Q Consensus 36 ~IG~i~~~~~~---~g-~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~-----a~~~~~~li~~~~v~aiiG 103 (550)
+||+++|++.. .+ .....|+++|+++||+++ +|++|++++.|+++++.. +...+.++...+++.+|||
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~~D~~~~~~~c~~~~~~~~~~~~~~~~~v~aiiG 80 (405)
T cd06385 1 TLAVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVLGSSENKEGVCSDSAAPLVAVDLKFTHNPWAFIG 80 (405)
T ss_pred CeeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEEccccccCCCCccccchHHHHHHHHhcCCcEEEC
Confidence 59999998832 44 677789999999999996 589999999998665543 3333344333479999999
Q ss_pred CCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEE-EEEEcCC-CC
Q 008863 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVA-AIYEDNV-YG 180 (550)
Q Consensus 104 ~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~-ii~~~~~-~g 180 (550)
|.||..+.+++++++.++||+|+++++ ++.. ++..|||+||+.|++..++.++++++++|+|++++ ++|.++. ++
T Consensus 81 p~~S~~~~~va~~a~~~~iP~Is~~a~--~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~ii~~~~~~~~ 158 (405)
T cd06385 81 PGCDYTASPVARFTTHWDVPLVTAGAP--ALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAMLIYSDNKVDD 158 (405)
T ss_pred CCccchHHHHHHHHhccCCcEEccccC--hhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEEEEecCcccc
Confidence 999999999999999999999999988 6664 45689999999999999999999999999999988 4666543 22
Q ss_pred Ccch---hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 181 GDSG---KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 181 ~~~~---~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
+. ..+.+.+.+++.| ++|......+. +..|++.+|+++++.. |+||+ +++.+....++++|.++||
T Consensus 159 --~~~~~~~~~l~~~~~~~g-i~v~~~~~~~~------~~~d~~~~l~~ik~~~-~iii~-~~~~~~~~~i~~~a~~~g~ 227 (405)
T cd06385 159 --RPCYFAMEGLYMELKKNN-ITVVDLVFEED------DLINYTTLLQDIKQKG-RVIYV-CCSPDIFRRLMLQFWREGL 227 (405)
T ss_pred --cchHHHHHHHHHHHHhCC-eEEEEeeccCC------chhhHHHHHHHHhhcc-eEEEE-eCCHHHHHHHHHHHHHcCC
Confidence 22 4688889999999 99987653322 3468999999998754 99999 9999999999999999999
Q ss_pred CCCCEEEEEeccchhhccc------------CChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCC--CC
Q 008863 258 VGKDSVWIVTNTVANALDS------------LNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED--HF 323 (550)
Q Consensus 258 ~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~ 323 (550)
.++.|+||+++.+...... .+......+++++....+.+ .++.+++|.++|+++....+ .+. .+
T Consensus 228 ~~~~y~~i~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~a~~~v~~~~~~~~-~~~~~~~f~~~~~~~~~~~~-~~~~~~~ 305 (405)
T cd06385 228 PSEDYVFFYIDLFGASLQGPDPKRPWYRGDADDAAAREAFQSVKILTYKEP-QNPEYKEFLSDLKTDAKEMF-NFTVEDS 305 (405)
T ss_pred CCCcEEEEEeecchhhccCCCCCCCCCCCCcccHHHHHhhheeEEEeCCCC-CChhHHHHHHHHHHHhhccC-CCccchh
Confidence 9999999998665322110 11223455677776654333 34788999999988643222 111 12
Q ss_pred CCCchhhHHhHHHHHHHHHHHhhcc---CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEe---eCCeeeE
Q 008863 324 HPSIHALRAHDSIKIITEAIGRLNY---NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV---VGKKYKE 397 (550)
Q Consensus 324 ~~~~~~~~~yDav~~~a~Al~~~~~---~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~---~~~~~~~ 397 (550)
.++.+++++||||+++++||+++.. .+.+|+.|.++|++++|+|++|++.||++|+|. ..|.++.+ ++++++.
T Consensus 306 ~~~~~aa~~YDav~l~a~Al~~~~~~~~~~~~g~~i~~~l~~~~f~G~tG~v~fd~~G~r~-~~~~~~~~~~~~~g~~~~ 384 (405)
T cd06385 306 LMNIIAGGFYDGVMLYAHALNETMAKGGTRPPGTAITQRMWNRTFYGVTGFVKIDDNGDRE-TDFALWDMTDTESGDFQV 384 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhCceEeeceeEEEEcCCCCEe-ceeEEEEccCCCCCcEEE
Confidence 3668899999999999999999722 134899999999999999999999999999995 78877755 6789999
Q ss_pred EEEEeC
Q 008863 398 LDFWLP 403 (550)
Q Consensus 398 vG~w~~ 403 (550)
||+|+.
T Consensus 385 v~~~~~ 390 (405)
T cd06385 385 VSVYNG 390 (405)
T ss_pred EEEEcc
Confidence 999985
|
Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure. |
| >cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=332.59 Aligned_cols=319 Identities=21% Similarity=0.311 Sum_probs=263.9
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~-~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
+||+||+. ..|....+|+++|+++||+++ +|++|++++.|++ +++..+.+.+|+++++ +|.+|+||.+|..+.
T Consensus 1 ~iG~i~~~--~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~~~~~li~~-~V~aiiG~~~S~~~~ 77 (327)
T cd06382 1 RIGAIFDD--DDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQQ-GVAAIFGPSSSEASS 77 (327)
T ss_pred CeEEEecC--CCchHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHHHhhhhhhc-CcEEEECCCChhHHH
Confidence 59999996 447899999999999999997 4899999999998 8999999999999985 999999999999999
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
+++++++.++||+|+++++ ++... .++++||+.|++..++.++++++++++|+++++||++++++ .. +.+
T Consensus 78 av~~~~~~~~vP~Is~~~~--~~~~~--~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vavl~~~~~~~--~~----l~~ 147 (327)
T cd06382 78 IVQSICDAKEIPHIQTRWD--PEPKS--NRQFTINLYPSNADLSRAYADIVKSFNWKSFTIIYESAEGL--LR----LQE 147 (327)
T ss_pred HHHHHHhccCCCceeccCC--cCccc--cccceEEeCCCHHHHHHHHHHHHHhcCCcEEEEEecChHHH--HH----HHH
Confidence 9999999999999998877 55444 45789999999999999999999999999999999988755 43 444
Q ss_pred HHhcCCCe---EEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 192 ALQNVSSS---EIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 192 ~l~~~g~~---~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
.+++.+ . .+.. ..+++ .. |++.+|++|++.++|+|++ .+....+..++++|+++||.++.|+|++++
T Consensus 148 ~~~~~~-~~g~~v~~-~~~~~------~~-d~~~~l~~i~~~~~d~vv~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~ 217 (327)
T cd06382 148 LLQAFG-ISGITITV-RQLDD------DL-DYRPLLKEIKNSGDNRIII-DCSADILIELLKQAQQVGMMSEYYHYIITN 217 (327)
T ss_pred HHHhhc-cCCCeEEE-EEccC------Cc-cHHHHHHHHHhcCceEEEE-ECCHHHHHHHHHHHHHhCccccceEEEEec
Confidence 444444 3 3443 33433 23 8999999999999999999 999999999999999999999999999977
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
......++.. ......+..++..+.+. ++..++|.++|+++|...++......|+.+++.+|||++++
T Consensus 218 ~~~~~~~l~~--~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~a~~yDav~~~--------- 285 (327)
T cd06382 218 LDLHTLDLED--YRYSGVNITGFRLVDPD-SPEVKEVIRSLELSWDEGCRILPSTGVTTESALMYDAVYLF--------- 285 (327)
T ss_pred CCccccchhh--hccCceeEEEEEEecCC-chhHHHHHHHHHhhcccccccCCCCCcchhhhhhhceEEEe---------
Confidence 7554433211 11122245555555443 48899999999999865433333345778899999999998
Q ss_pred CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCC
Q 008863 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGF 407 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~ 407 (550)
|+||+|+||++|+|.++.++|+++.++++++||.|++..|+
T Consensus 286 ------------------g~tG~v~f~~~g~r~~~~~~~~~~~~~~~~~vg~w~~~~~~ 326 (327)
T cd06382 286 ------------------GLTGRIEFDSSGQRSNFTLDVIELTESGLRKVGTWNSSEGL 326 (327)
T ss_pred ------------------ecccceeeCCCCCEeeeEEEEEeccccCceEEEEECCCCCc
Confidence 99999999999999999999999999999999999987775
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri |
| >cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=326.24 Aligned_cols=341 Identities=18% Similarity=0.172 Sum_probs=270.0
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
|||++.|++ +..|.....|+++|+++||+++ +|++|+++++|++|++..++..+.++ +++|.+||||.+|..
T Consensus 1 ~ig~~~p~sg~~~~~g~~~~~a~~lAie~iN~~g~il~g~~l~~~~~d~~~~~~~a~~~~~~~--~~~V~aviGp~~S~~ 78 (382)
T cd06371 1 KVGVLGPWSCDPIFSKALPDVAARLAVSRINRDPSLSLGYWFDYVLLPEPCETSRALAAFLGY--EGYASAFVGPVNPGY 78 (382)
T ss_pred CceEecCcccCchhhhhhHHHHHHHHHHHHhCCCCCCCCceEEEEEecCCCChhHHHHHHHcc--cCCceEEECCCCchH
Confidence 599999997 4567788899999999999997 57899999999999987666444332 369999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
+.+++++++.++||+|+++++ ++.++ +..||+++|+.|+. ..++++++++|+|++|++|++++++| ....+.
T Consensus 79 ~~a~a~va~~~~iP~Is~~a~--~~~lt~~~~y~~f~r~~~~~---~~~~~~~~~~~~w~~vaii~~~~~~~--~~~~~~ 151 (382)
T cd06371 79 CEAAALLAKEWDKALFSWGCV--NYELDDVRSYPTFARTLPSP---SRVLFTVLRYFRWAHVAIVSSPQDIW--VETAQK 151 (382)
T ss_pred HHHHHHHHHhcCceEEecccC--chhhcCcccCCCceecCCCc---HHHHHHHHHHCCCeEEEEEEecccch--HHHHHH
Confidence 999999999999999999988 66644 56789999999985 56788999999999999999999998 889999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC-CeEEEEEcCCH-----HHHHHHHHHHHHcCCCCCCE
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-SRVFIVLQASL-----DMTIHLFTEANRMGLVGKDS 262 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~~ii~~~~~~-----~~~~~il~~a~~~g~~~~~~ 262 (550)
+.+.+++.| ++|+....++. ...|++++|++|++.+ +|+||+ ++.. .....++++|+++||++.+|
T Consensus 152 l~~~l~~~g-i~v~~~~~~~~------~~~d~~~~L~~lk~~~~~~viv~-~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y 223 (382)
T cd06371 152 LASALRAHG-LPVGLVTSMGP------DEKGAREALKKVRSADRVRVVIM-CMHSVLIGGEEQRLLLETALEMGMTDGRY 223 (382)
T ss_pred HHHHHHHCC-CcEEEEEEecC------CHHHHHHHHHHHhcCCCcEEEEE-EeeccccCcHHHHHHHHHHHHcCCcCCcE
Confidence 999999999 99988777765 3479999999999987 699998 7655 67789999999999999999
Q ss_pred EEEEeccchhhc--------cc-CChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhcc-CCCC-CCCCCCchhhH
Q 008863 263 VWIVTNTVANAL--------DS-LNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSE-YPEE-DHFHPSIHALR 331 (550)
Q Consensus 263 ~~i~~~~~~~~~--------~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~-~~~~~~~~~~~ 331 (550)
+||.++...... .. .+.......++++.+... ... .+|.+.|++.+... .+.. ....+..++++
T Consensus 224 ~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T cd06371 224 VFIPYDTLLYSLPYRNVSYPALRNNSKLRRAYDAVLTITMD-SGE----QSFYEAFRAAQERGEIPSDLEPEQVSPLFGT 298 (382)
T ss_pred EEEEeccccccCCCCCccccCCCCCHHHHHHhHhhEEEEec-CCC----CcHHHHHHHHHhcCCCCCCCCccccchhHHH
Confidence 999987432111 00 112233566777666543 222 34555555544211 1110 01123456668
Q ss_pred HhHHHHHHHHHHHhhccC--CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEE
Q 008863 332 AHDSIKIITEAIGRLNYN--ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELD 399 (550)
Q Consensus 332 ~yDav~~~a~Al~~~~~~--~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG 399 (550)
+|||++++++|++++.+. ..++.+++++|++++|+|++|+++||++|++ ...|.|+++.+.+++-+=
T Consensus 299 ~YDav~~~a~Al~~a~~~g~~~d~~~l~~~l~~~~f~GvtG~v~fd~~g~~-~~~~~v~~~~~~~~~~~~ 367 (382)
T cd06371 299 IYNSIYLLAHAVENARAAGGGVSGANLAQHTRNLEFQGFNQRLRTDSGGGG-QAPYVVLDTDGKGDQLYP 367 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhCccccccceEEEecCCCCc-ccceEEEecCCCCCeeee
Confidence 999999999999998531 2489999999999999999999999999998 499999999987766543
|
This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge |
| >cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=323.46 Aligned_cols=353 Identities=16% Similarity=0.201 Sum_probs=271.4
Q ss_pred EEEEEEecCC----ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCH----HHHHHHHHHhhhcCCeEEEEcC
Q 008863 36 KIGAIVDANS----QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDP----FQAATAAQELINKEKVKVIAGM 104 (550)
Q Consensus 36 ~IG~i~~~~~----~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~----~~a~~~~~~li~~~~v~aiiG~ 104 (550)
+||+++|.+. ..-.....|+++|+++||+++ +|++|++.++|+++++ ..+...+..+...+++.+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~lAieeiN~~g~il~g~~l~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp 80 (399)
T cd06384 1 TLAVVLPDNNLKYAWAWPRVGPAIRMAVERIQNKGKLLRGYTITLLNKSSELNGGCSESLAPLHAVDLKLYSDPDVFFGP 80 (399)
T ss_pred CeEEECCCCCCCCeeehhhhHHHHHHHHHHHhccCCcCCCceEEEEEeccCCccccchhhhHHHHHHHHhhcCCCEEECC
Confidence 4788887652 122355679999999999997 5899999999986553 3333233222112578899999
Q ss_pred CChHHHHHHHHhhccCCccEEeccCCCCCCcc-cC-CCCCeEEEEecCcHHhHHHHHHHHHHcCCe-EEEEEEEcCCCC-
Q 008863 105 ETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MS-RRWPYLIRMASNDSEQMKCIADLARKYNWR-RVAAIYEDNVYG- 180 (550)
Q Consensus 105 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~~al~~~l~~~~w~-~v~ii~~~~~~g- 180 (550)
.||..+.+++++++.++||+|+++++ ++.+ ++ ..||++||+.|++..++.++..++++|+|+ ++++||+++..+
T Consensus 81 ~~S~~~~av~~i~~~~~iP~Is~~at--~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaiiy~~~~~~~ 158 (399)
T cd06384 81 GCVYPTASVARFATHWRLPLITAGAP--AFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALLYLDLKTDD 158 (399)
T ss_pred CCchHHHHHHHHHhhcCCcEEeeccc--hhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEEEecCCccC
Confidence 99999999999999999999999998 6664 33 478999999999999999988888999999 688998754221
Q ss_pred -CcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 181 -GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 181 -~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.....+.+.+.+++.| ++|+....... ...|++++|+++++ ++|+|++ ++....+..++++++++||.+
T Consensus 159 ~~~~~~~~~~~~~~~~~g-i~v~~~~~~~~------~~~d~~~~l~~ik~-~~~vIi~-~~~~~~~~~i~~qa~~~g~~~ 229 (399)
T cd06384 159 RPHYFISEGVFLALQEEN-ANVSAHPYHIE------KNSDIIEIIQFIKQ-NGRIVYI-CGPLETFLEIMLQAQREGLTP 229 (399)
T ss_pred CcceEehHHHHHHHHhcC-ceEEEEEEecc------chhhHHHHHHHHhh-cccEEEE-eCCchHHHHHHHHHHHcCCCC
Confidence 00113566777788889 99887554433 34799999999997 8999999 999999999999999999999
Q ss_pred CCEEEEEeccchhhcc-----c--------CChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCC-
Q 008863 260 KDSVWIVTNTVANALD-----S--------LNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHP- 325 (550)
Q Consensus 260 ~~~~~i~~~~~~~~~~-----~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~- 325 (550)
+.|+||..+.+..... . ......+.+++++.+..+.+. ++.+++|.++|++++..++. + ...|
T Consensus 230 ~~y~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~-~-~~~p~ 306 (399)
T cd06384 230 GDYVFFYLDVFGESLRVKSPRESYKQMNHSSWTVLKEAFKSVFVITYREPE-NPEYKEFQRELHARAKEDFG-V-ELEPS 306 (399)
T ss_pred CcEEEEEehhcccccccCCCCccccCCCCcccHHHHHHHhheEEeecCCCC-CchHHHHHHHHHHHHhhhcC-C-CcCcc
Confidence 9999998765432111 0 012333467788877655444 47789999999886544331 1 1123
Q ss_pred --CchhhHHhHHHHHHHHHHHhhcc---CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEE---EEeeCCeeeE
Q 008863 326 --SIHALRAHDSIKIITEAIGRLNY---NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRI---VNVVGKKYKE 397 (550)
Q Consensus 326 --~~~~~~~yDav~~~a~Al~~~~~---~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i---~~~~~~~~~~ 397 (550)
+.+++++|||+++++.|++++.. .|.+|..|+++|++++|+|++|+++||++|+|. ..+.+ .++++++++.
T Consensus 307 ~~~~~aa~~YDav~l~a~Al~~~~~~~~~~~~g~~i~~~l~~~~f~GvtG~v~fd~~G~r~-~~~~~~~~~~~~~g~~~~ 385 (399)
T cd06384 307 LMNFIAGCFYDGVMLYAMALNETLAEGGSQKDGLNITRKMQDRRFWGVTGLVSIDKNNDRD-IDFDLWAMTDHETGKYEV 385 (399)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCcHhHHHHHhCceeecceeEEEECCCCCcc-cceEEEEeecCCCCeEEE
Confidence 56789999999999999999732 246899999999999999999999999999994 56666 4667899999
Q ss_pred EEEEeC
Q 008863 398 LDFWLP 403 (550)
Q Consensus 398 vG~w~~ 403 (550)
+|+|+.
T Consensus 386 v~~~~~ 391 (399)
T cd06384 386 VAHYNG 391 (399)
T ss_pred EEEEcC
Confidence 999986
|
Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux. |
| >cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=313.73 Aligned_cols=337 Identities=15% Similarity=0.193 Sum_probs=249.8
Q ss_pred EEEEEEecCCccchhHHHHHHHHH--HHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAV--QNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av--~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
+||+||+.++. ....||++|+ +++|+++ ++..++++.+|+.+||.++.+++|+|+++ +|.|||||.++..+.
T Consensus 1 ~IG~if~~~~~---~~~~af~~ala~~~iN~~gg~~~~~i~~v~~dd~~d~~~a~~~~c~Li~~-gV~AI~G~~~s~~~~ 76 (363)
T cd06381 1 HIGAIFSESAL---EDDEVFAVAVIDLNINEQILQTEKITLSISFIDLNNHFDAVQEACDLMNQ-GILALVTSTGCASAI 76 (363)
T ss_pred CeeeeccCCcc---hHHHHHHHHHHHhhccccccCCccceeeeEeecCCChHHHHHHHHHHHhc-CcEEEEecCChhHHH
Confidence 59999998742 3344555555 5566655 35667888899999999999999999986 999999999999999
Q ss_pred HHHHhhccCCccEEeccCCCC-CCcc------cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcch
Q 008863 112 VVAEIASRVQVPILSFAAPAV-TPLS------MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~-~~~~------~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~ 184 (550)
+++++|+..+||+|++.+... +|.. +....+|.|++.|+. .+..++++++++++|++|+++|+++++ ..
T Consensus 77 av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~-~~~~ai~~lv~~~~wkkvavly~~d~g---~~ 152 (363)
T cd06381 77 ALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPPV-RLNDVMLRLVTEWRWQKFVYFYDNDYD---IR 152 (363)
T ss_pred HHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEeccH-HHHHHHHHHHHhCCCeEEEEEEECCch---HH
Confidence 999999999999999765300 1101 112346778888884 788999999999999999999998874 44
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhh-------cCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-------DKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~-------~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
..+.+.+.+++.| +.+.... .... ....++..++.++ +.+.+.||+ .|+++.+..++++|.++||
T Consensus 153 ~l~~~~~~~~~~g-~~v~~~~-~~~~-----~~~~~~~l~~~~~~~~l~~~~~~~~~vIl-~~~~~~~~~~l~~a~~~gm 224 (363)
T cd06381 153 GLQEFLDQLSRQG-IDVLLQK-VDLN-----ISKMATALFTTMRCEELNRYRDTLRRALL-LLSPNGAYTFIDASVETNL 224 (363)
T ss_pred HHHHHHHHHHhcC-ceEEEEe-cccc-----cchhhhhhhhHHHHHHHHhhcccceEEEE-EcCcHHHHHHHHHHHHcCC
Confidence 5577778888888 7665432 2211 1123344444332 445668888 9999999999999999999
Q ss_pred CCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccC-C-CCCCCCCCchhhHHhHH
Q 008863 258 VGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEY-P-EEDHFHPSIHALRAHDS 335 (550)
Q Consensus 258 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~-~~~~~~~~~~~~~~yDa 335 (550)
++.+|+|++++.|....... ........|+++|+...+.. +..+.|.+.+.+.+...+ + ....+.+...++++|||
T Consensus 225 ~~~~~~wi~~~~l~~~~~~l-~~~~~~~~nitgfrl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~yDa 302 (363)
T cd06381 225 AIKDSHWFLINEEISDTEID-ELVRYAHGRMTVIRQTFSKE-KTNQRCLRNNHRISSLLCDPKDGYLQMLEISNLYIYDS 302 (363)
T ss_pred CcCceEEEEeccccccchhh-HHHhhcCccEEEEEEecCCc-CchHHHHHHHHHHHHhhcCCCCCCCCChhHHHHHHHHH
Confidence 99999999888776532211 23345567889999876544 456655443333322111 0 11123566789999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCe-----eeEEEEEeCCCCC
Q 008863 336 IKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKK-----YKELDFWLPNFGF 407 (550)
Q Consensus 336 v~~~a~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~-----~~~vG~w~~~~g~ 407 (550)
|+++ .++|+++.|+|+||+|+||++|.|.++.++|+++...+ .+++|+|++..|+
T Consensus 303 V~~~-----------------~~~~~~~~~~GLTG~i~F~~~g~r~~~~l~i~~~~~~~~~~~~~~~~~~w~~~~~~ 362 (363)
T cd06381 303 VLLL-----------------LETIKKGPITGLTGKLEFNEGGDNSNVQFEILGTGYSETLGKDGRWLATWNPSKGL 362 (363)
T ss_pred HHHH-----------------HHHHHhcCccCcceeEEeCCCCCccccEEEEEEeccCCccccceEEeeeccCCCCC
Confidence 9999 78889999999999999999999999999999998555 7889999987775
|
This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G |
| >PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=308.97 Aligned_cols=334 Identities=16% Similarity=0.212 Sum_probs=282.7
Q ss_pred CcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++|+||++.|++ +..|.....++++|++++|+.+ .|++|++++.|++++|..+.+.+.+|+. ++|.+|+|+.++
T Consensus 24 ~~I~IG~l~plSG~~a~~G~~~~~g~~~av~~iNa~GGi~G~~ielv~~D~~~~p~~a~~~~~~Li~-~~V~~iiG~~~s 102 (369)
T PRK15404 24 DDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYDDACDPKQAVAVANKVVN-DGIKYVIGHLCS 102 (369)
T ss_pred CceEEEEeecCCCcchhcCHhHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCCCHHHHHHHHHHHHh-CCceEEEcCCCc
Confidence 589999999999 4578889999999999999987 5899999999999999999999999996 799999999999
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcCCCCCcchhH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
..+.+++++++..++|+|++.++ ++.+....++|+||+.|.+..+..++++++ ++++|+++++|++++.|| +...
T Consensus 103 ~~~~a~~~~~~~~~ip~i~~~s~--~~~l~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k~va~i~~d~~~g--~~~~ 178 (369)
T PRK15404 103 SSTQPASDIYEDEGILMITPAAT--APELTARGYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIAVLHDKQQYG--EGLA 178 (369)
T ss_pred hhHHHhHHHHHHCCCeEEecCCC--CHHHhcCCCceEEeCCCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCchh--HHHH
Confidence 99999999999999999999887 666555668999999999999999999987 457999999999999999 9999
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+++.| ++++....++.. ..|+..++.++++.++|+|++ .........++++++++|+.. .|+.
T Consensus 179 ~~~~~~~~~~G-~~v~~~~~~~~g------~~D~~~~v~~l~~~~~d~v~~-~~~~~~~~~~~k~~~~~G~~~---~~i~ 247 (369)
T PRK15404 179 RSVKDGLKKAG-ANVVFFEGITAG------DKDFSALIAKLKKENVDFVYY-GGYHPEMGQILRQAREAGLKT---QFMG 247 (369)
T ss_pred HHHHHHHHHcC-CEEEEEEeeCCC------CCchHHHHHHHHhcCCCEEEE-CCCchHHHHHHHHHHHCCCCC---eEEe
Confidence 99999999999 999887777764 378999999999999999998 888888899999999999864 5666
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
+..+... .+ .....+..+|+++..++....+|..++|.+.|++.+ +..++.++..+||++++++.|++++
T Consensus 248 ~~~~~~~-~~-~~~~~~~~~Gv~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~~~~~~~~~Y~~~~~l~~Al~~a 317 (369)
T PRK15404 248 PEGVGNK-SL-SNIAGPASEGMLVTLPKRYDQDPANKAIVDAFKAKK--------QDPSGPFVWTTYAAVQSLAAGINRA 317 (369)
T ss_pred cCcCCCH-HH-HHhhhhhhcCcEEEccCCCccChhHHHHHHHHHHhc--------CCCCccchHHHHHHHHHHHHHHHhh
Confidence 5433211 11 011124567877655443444577888988888765 2344566788999999999999999
Q ss_pred ccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCe
Q 008863 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKK 394 (550)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~ 394 (550)
+.. +++.|+++|++.+|+|++|+++|+.+|+.....|.|++|++.+
T Consensus 318 G~~--~~~~l~~al~~~~~~~~~G~~~~~~~g~~~~~~~~i~~~~~~~ 363 (369)
T PRK15404 318 GSD--DPAKVAKYLKANTFDTVIGPLSWDEKGDLKGFEFGVFEWHADG 363 (369)
T ss_pred CCC--CHHHHHHHHHhCCCCcceEeeEECCCCCcccCCEEEEEEEcCC
Confidence 876 8999999999999999999999999998877899999988654
|
|
| >KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=318.69 Aligned_cols=382 Identities=20% Similarity=0.299 Sum_probs=319.9
Q ss_pred CCCcEEEEEEEecCC-------------ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhh-
Q 008863 31 IEEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELIN- 94 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~- 94 (550)
.+++|.||++||.+. ..|.+...|+.+|+++||+.. ||+++.+.++|+|+.+..|+++..+++.
T Consensus 28 ~~gdi~lgglFpvh~k~~~~~~cg~~~~~~gi~r~eAml~al~~iN~~~lLp~~kLG~~i~DTCs~~t~aleqsl~Fv~~ 107 (878)
T KOG1056|consen 28 IPGDIILGGLFPVHEKGGGAPQCGRIREPRGIQRLEAMLFALDEINNPDLLPNIKLGARILDTCSRSTYALEQSLSFVRA 107 (878)
T ss_pred CCCCeEEcceeeecccCCCCCcccccccchhHHHHHHHHHHHHHhcCcccCCCceeeeeEeeccCCcHHHHHhhHHHHHh
Confidence 457899999999871 457788899999999999833 8999999999999999999999988774
Q ss_pred ---------------cCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcHHhHHHH
Q 008863 95 ---------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDSEQMKCI 158 (550)
Q Consensus 95 ---------------~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~al 158 (550)
...|.++||+..|..+.+++.+..-++||+|+++++ ++. +++.+|+||.|+.|+|..|++||
T Consensus 108 ~~~~~~~e~~c~~g~sp~v~~VIG~s~Ssvsi~vanlLrlf~ipQisyaSt--s~~LSdk~ry~~F~RtVP~D~~Qa~Am 185 (878)
T KOG1056|consen 108 SLTSDDSEVRCPDGYSPPVVAVIGPSYSSVSIAVANLLRLFLIPQISYAST--SPDLSDKTRYDYFLRTVPSDVFQAQAM 185 (878)
T ss_pred cccCCCcceecCCCCCCceeEEeCCCCchHHHHHHHHHHhhcCceeccccC--CcccccchhhhceeeecCChHHHHHHH
Confidence 145899999999999999999999999999999999 777 78999999999999999999999
Q ss_pred HHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEE
Q 008863 159 ADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIV 237 (550)
Q Consensus 159 ~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~ 237 (550)
++++++|+|++|..++++++|| +...+.|++..+..| +||...+.++... .+..+...++++.+ .++++||+
T Consensus 186 ~~il~~f~W~yVstv~s~~dYG--E~Gieaf~~~a~~~~-iCIa~s~ki~~~~----~~~~~~~~l~kl~~~~~a~vvV~ 258 (878)
T KOG1056|consen 186 VDILKKFNWNYVSTVASEGDYG--ESGIEAFKEEAAERG-ICIAFSEKIYQLS----IEQEFDCVLRKLLETPNARVVVV 258 (878)
T ss_pred HHHHHHhCeeEeeehhcCccch--hhhHHHHHHhHHhcC-ceEEehhhccccc----chhHHHHHHHHHhhcCCCeEEEE
Confidence 9999999999999999999999 999999999999999 9999988777654 66788999999887 69999999
Q ss_pred EcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHH--------
Q 008863 238 LQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALF-------- 309 (550)
Q Consensus 238 ~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~-------- 309 (550)
.+..++++.++++|+.+++.+ .++||.++.|....+.... ......|.+++....... +.+++|.+..
T Consensus 259 -F~~~~~~r~~~~aa~~~n~~g-~~~wiaSd~W~~~~~~~~~-~e~~a~g~i~i~l~~~~v-~~F~~y~~s~~p~nn~~n 334 (878)
T KOG1056|consen 259 -FCRGEDARRLLKAARRANLTG-EFLWIASDGWASQNSPTEA-PEREAEGAITIKLASPQV-PGFDRYFQSLHPENNRRN 334 (878)
T ss_pred -ecCcchHHHHHHHHHHhCCCc-ceEEEecchhhccCChhhh-hhhhhceeEEEEecCCcc-hhHHHHHHhcCccccccC
Confidence 999999999999999999988 4799999999975444322 234678999998876554 7788877653
Q ss_pred --HHHhhccCCCCCCC-------------C------------CCchhhHHhHHHHHHHHHHHhhccC-------------
Q 008863 310 --RRNFTSEYPEEDHF-------------H------------PSIHALRAHDSIKIITEAIGRLNYN------------- 349 (550)
Q Consensus 310 --~~~~~~~~~~~~~~-------------~------------~~~~~~~~yDav~~~a~Al~~~~~~------------- 349 (550)
-+.||++.+.|... . -......++|||+.+|+||+.+..+
T Consensus 335 ~w~~e~w~~~f~C~l~~~~~~~~~~~~~Ct~~e~~~~~~~~~q~~k~~~Vi~aVya~A~aLh~m~~~lc~~~~~~C~~m~ 414 (878)
T KOG1056|consen 335 PWFAEFWEDKFNCSLPNSAFKNENLIRLCTAVERITLDSAYEQDSKVQFVIDAVYAMAHALHNMHQDLCPGTSGLCSAMK 414 (878)
T ss_pred cccchhhhhcccCCCCcccccchhhhhhcccchhhccccchhhhcccccHHHHHHHHHHHHHHHHHhhcCCccccCcCcc
Confidence 33455544444211 0 0124556899999999999998653
Q ss_pred CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC----CeeeEEEEEeCCCCCccccCCCCcCCcCCCccc
Q 008863 350 ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG----KKYKELDFWLPNFGFSKTSSKHNVGDISSNIAA 425 (550)
Q Consensus 350 ~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~----~~~~~vG~w~~~~g~~~~~~~~~~~~~~~~~~~ 425 (550)
..+|+.|.+.+++++|.+..|.+.||++|+.. ..|+|++++. ..+..+|+|+....++.
T Consensus 415 ~~dg~~L~~~l~~vnF~~~~~~v~Fd~~gD~~-~~y~I~~~~~~~~~~~y~~vg~w~~~~~l~i---------------- 477 (878)
T KOG1056|consen 415 AIDGSLLLKYLLNVNFTGPAGSVRFDENGDGP-GRYDILNYQLTNGSYTYKEVGYWSEGLSLNI---------------- 477 (878)
T ss_pred ccCHHHHHhhhheeEEecCCCceeecCCCCCc-cceeEEEeeccCCCccceeeeeecccccccc----------------
Confidence 35899999999999999999999999999985 9999999984 26899999997555321
Q ss_pred cCCCCccccCCCCCCCCCCccc
Q 008863 426 EGFTGPVIWPGNLINRNPKGWA 447 (550)
Q Consensus 426 ~~~~~~i~wp~~~~~~~p~~~~ 447 (550)
..+.|.++.. ..|++.+
T Consensus 478 ----~~~~w~~~~~-~v~~S~C 494 (878)
T KOG1056|consen 478 ----EDLDWTTKPS-GVPKSVC 494 (878)
T ss_pred ----eeeeeccCCC-CCccccc
Confidence 2377888877 7777765
|
|
| >cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=306.42 Aligned_cols=319 Identities=19% Similarity=0.297 Sum_probs=259.0
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecC-CCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDH-NRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~-~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
+||+|++.++ .....|+++|+++||+++ ++.++++.+.|+ .+++..+.+.+|+|+. ++|.+||||.+|..+.
T Consensus 1 ~iG~i~~~~~---~~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~~~~a~~~a~~li~-~~V~aiiG~~~S~~~~ 76 (324)
T cd06368 1 RIGAIFDEDA---RQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLS-QGVAAIFGPSSSSSAN 76 (324)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHHHhcccccccCCceeeeEEEEecCCChHHHHHHHHHHHh-cCcEEEECCCCHHHHH
Confidence 5999999986 788899999999999997 356888888887 5999999999999998 7999999999999999
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
+++++++.++||+|+++++ ++... .++.+++.|+...++.++++++++++|+++++||++++++ . ..+.+.+
T Consensus 77 av~~i~~~~~ip~is~~~~--~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~~--~-~l~~~~~ 148 (324)
T cd06368 77 TVQSICDALEIPHITTSWS--PNPKP---RQFTINLYPSMRDLSDALLDLIKYFGWRKFVYIYDSDEGL--L-RLQELLD 148 (324)
T ss_pred HHHHHHhccCCCcEEecCC--cCCCC---CcceEEecCCHHHHHHHHHHHHHhcCCCEEEEEECCcHhH--H-HHHHHHH
Confidence 9999999999999999987 55543 2345566688889999999999999999999999877643 4 4566666
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccch
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (550)
.+.+.| +++...... +. . +|++.++.++++.++++||+ .+...++..+++++.++||.++.|+||+++...
T Consensus 149 ~~~~~g-~~v~~~~~~-~~-----~-~d~~~~l~~i~~~~~d~Vi~-~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~ 219 (324)
T cd06368 149 ALSPKG-IQVTVRRLD-DD-----T-DMYRPLLKEIKREKERRIIL-DCSPERLKEFLEQAVEVGMMSEYYHYILTNLDF 219 (324)
T ss_pred hhccCC-ceEEEEEec-CC-----c-hHHHHHHHHHhhccCceEEE-ECCHHHHHHHHHHHHHhccccCCcEEEEccCCc
Confidence 777778 888866533 22 2 38999999999999999999 999999999999999999998899999977643
Q ss_pred hhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccCCC
Q 008863 272 NALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNIS 351 (550)
Q Consensus 272 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~ 351 (550)
...+.. .......++.++..... .+|..++|.++|++.+...++......|..+++.+|||++++
T Consensus 220 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~aa~~yDav~~~------------ 284 (324)
T cd06368 220 HTLDLE--LFRYGGVNITGFRLVDP-DNPEVQKFIQRWERSDHRICPGSGLKPIKTESALTYDAVLLF------------ 284 (324)
T ss_pred cccchh--hhhcCCceEEEEEEecC-CChHHHHHHHHHHhccccccCCCCCCCcchhhHhhhcEEEEe------------
Confidence 322111 11112223444444333 358899999999998865333222336788999999999988
Q ss_pred CHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCC
Q 008863 352 SPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGF 407 (550)
Q Consensus 352 ~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~ 407 (550)
||+++||++|+|.++.++|+++.+.+++++|.|++..++
T Consensus 285 -----------------tg~~~f~~~g~~~~~~~~i~~~~~~~~~~~g~W~~~~~~ 323 (324)
T cd06368 285 -----------------TGRIQFDENGQRSNFTLDILELKEGGLRKVGTWNPEDGL 323 (324)
T ss_pred -----------------eeeeEeCCCCcCcceEEEEEEEcCCCceEEEEECCCCCC
Confidence 999999999999999999999999999999999987664
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors |
| >PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=312.19 Aligned_cols=329 Identities=23% Similarity=0.363 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008863 51 AITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (550)
Q Consensus 51 ~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~ 127 (550)
...|+++|+++||+++ ++++|++.+.|+++++......+...+..+++.+||||.++..+.+++.+++.++||+|++
T Consensus 2 ~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~ 81 (348)
T PF01094_consen 2 VLAAVQLAIDEINNNPDLLPNITLEVQVFDTCSDDSFALQAAICSLNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISP 81 (348)
T ss_dssp HHHHHHHHHHHHHHSSTSSTTSEEEEEEEEETTTTHHHHHHHHHHHHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEEEEeeccCCcccccchhhhccCCCcEEEECCCcccccchhheeecccccceeec
Confidence 5689999999999986 6899999999998544445554444444479999999999999999999999999999999
Q ss_pred cCCCCCCc-cc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEe
Q 008863 128 AAPAVTPL-SM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRL 205 (550)
Q Consensus 128 ~~~~~~~~-~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~ 205 (550)
+++ ++. .+ +..+|+++|+.|++..+++++++++++|+|++|++||+++++| ....+.+.+.+++.+..++....
T Consensus 82 ~~~--~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (348)
T PF01094_consen 82 GST--SPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFGWTRVSVVYSDDDYG--NSLADSFQDLLRERGGICVAFIS 157 (348)
T ss_dssp SGG--SGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHHH--HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccc--ccccccchhhccccccccccHHHHHHHHHHhhhcCCCceeeeeccccccc--cccchhhhhhhcccccceecccc
Confidence 988 666 45 6799999999999999999999999999999999999999988 88899999999995414554412
Q ss_pred ecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHh
Q 008863 206 VLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVIS 283 (550)
Q Consensus 206 ~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~ 283 (550)
..... ..+....++.+++ .++++||+ +++...+..++++|.++||.+++|+||.++.+.............
T Consensus 158 ~~~~~------~~~~~~~~~~l~~~~~~~rvvil-~~~~~~~~~~l~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 230 (348)
T PF01094_consen 158 VVISS------DSDAEELLKKLKEIKSGARVVIL-CSSPEDARQFLEAAYELGMTSGDYVWILTDLDNSSFWQNNEDFRE 230 (348)
T ss_dssp EEETT------TSHHHHHHHHHHHHTTTTSEEEE-ESBHHHHHHHHHHHHHTTTSSTTSEEEEETTTTTTHTSTHCHHHC
T ss_pred ccccc------ccchhhhhhhhhhccccceeeee-ecccccccccccchhhhhccccceeEEeecccccccccccccccc
Confidence 22221 2344445555554 89999999 999999999999999999999999999999876543222334556
Q ss_pred hcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccC----------CCCH
Q 008863 284 SMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN----------ISSP 353 (550)
Q Consensus 284 ~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~----------~~~~ 353 (550)
...|++++...... .+.+.+|.++|+..............+..+++++|||++++++|++++... |.+|
T Consensus 231 ~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAv~~~a~al~~~~~~~~~~~~~~~~~~~g 309 (348)
T PF01094_consen 231 AFQGVLGFTPPPPS-SPEFEDFMKKWKESNNQSSTSGSDQEPSPYAAYAYDAVYLLAHALNRALQDGGPVTNGRNPWQNG 309 (348)
T ss_dssp CHTTEEEEEESTTT-SHHHHHHHHHHHTTTHTTTTTTTTSSGCHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSSGTSTTH
T ss_pred cccceeeeeeeccc-ccchhhhhcccChhhccCcccccccccceeeeeehhhhHHHHHHHHHHHHhccCCCCCccccccH
Confidence 77889988875444 478999998888754322222224567889999999999999999998642 4478
Q ss_pred HHHHHHHHhCcccccceeEEEeC-CCCCCCCceEEEEee
Q 008863 354 EMLLRQMLSSDFSGLSGKIRFKD-GELLNADTLRIVNVV 391 (550)
Q Consensus 354 ~~l~~~l~~~~~~G~tG~i~f~~-~g~~~~~~~~i~~~~ 391 (550)
..+.++|++++|.|++|++.|++ +|+|.+..|+|++++
T Consensus 310 ~~l~~~l~~~~f~G~tG~v~f~~~~G~~~~~~~~i~~~~ 348 (348)
T PF01094_consen 310 SQLLKYLRNVSFEGLTGRVSFDSNDGDRTNYDYDILNMQ 348 (348)
T ss_dssp HHHHHHHHTEEEEETTEEEEEETTTSBEESEEEEEEEE-
T ss_pred HHHHHHHhheeeeCCCCCEEEeCCCCCcCCCEEEEEECC
Confidence 89999999999999999999999 899988999999875
|
; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A .... |
| >cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=303.13 Aligned_cols=327 Identities=22% Similarity=0.286 Sum_probs=279.6
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||++.|++ +..|.....|+++|++++|+++ +|++|+++++|+++++..+.+.+.+++.+ +|.+|+||.++..+
T Consensus 1 ~iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~i~~~~~D~~~~~~~~~~~~~~li~~-~v~aiiG~~~s~~~ 79 (334)
T cd06342 1 KIGVAGPLTGPNAALGKDIKNGAQLAVEDINAKGGGKGVKLELVVEDDQADPKQAVAVAQKLVDD-GVVGVVGHLNSGVT 79 (334)
T ss_pred CeeEeccCCCcchhhcHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCChHHHHHHHHHHHhC-CceEEECCCccHhH
Confidence 599999999 4678889999999999999996 68999999999999999999999999986 99999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.+++.+++..+||+|+++++ ++......+|++||+.|++..++.++++++ ++++|++|++++++++|| ....+.+
T Consensus 80 ~~~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g--~~~~~~~ 155 (334)
T cd06342 80 IPASPIYADAGIVMISPAAT--NPKLTERGYKNVFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKTAYG--QGLADEF 155 (334)
T ss_pred HHhHHHHHhCCCeEEecCCC--CchhhcCCCceEEeccCCcHHHHHHHHHHHHHhcCCCEEEEEeCCcchh--hHHHHHH
Confidence 99999999999999999877 555555578999999999999999999987 578999999999999999 9999999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| ++|.....++.. ..|+...++++++.++++|++ .+....+..+++++.+.|+.. .|+.+..
T Consensus 156 ~~~~~~~g-~~v~~~~~~~~~------~~d~~~~l~~i~~~~~~~vi~-~~~~~~~~~~~~~~~~~g~~~---~~~~~~~ 224 (334)
T cd06342 156 KKALKAAG-GKVVAREGTTDG------ATDFSAILTKIKAANPDAVFF-GGYYPEAGPLVRQMRQLGLKA---PFMGGDG 224 (334)
T ss_pred HHHHHHcC-CEEEEEecCCCC------CccHHHHHHHHHhcCCCEEEE-cCcchhHHHHHHHHHHcCCCC---cEEecCc
Confidence 99999999 999988877653 378999999999999999999 889999999999999999853 5666554
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
+... .. ........+|++....+.+. .++..++|.++|.++|. ..++.++..+||+++++++|++++..
T Consensus 225 ~~~~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~~~yda~~~~~~al~~~~~ 294 (334)
T cd06342 225 LCDP-EF-IKIAGDAAEGTYATFPGGPLEKMPAGKAFVARYKAKFG--------DPPGAYAPYAYDAANVLAEAIKKAGS 294 (334)
T ss_pred cCCH-HH-HHHhhHhhCCcEEEecCCCCCCChHHHHHHHHHHHHhC--------CCCchhHHHHHHHHHHHHHHHHHhCC
Confidence 3211 11 01112446777766555433 45788888888888763 34567889999999999999999865
Q ss_pred CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEe
Q 008863 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV 390 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~ 390 (550)
. ++..+.++|++.+|+|++|+++|+++|++.+..|+|++|
T Consensus 295 ~--~~~~v~~~l~~~~~~g~~g~i~f~~~g~~~~~~~~~~~~ 334 (334)
T cd06342 295 T--DPAKVADALRKVDFDGVTGKISFDAKGDLKGAAVTVYQV 334 (334)
T ss_pred C--CHHHHHHHHHhCCCCCcceeeEECCCCCcccCcEEEEeC
Confidence 4 899999999999999999999999999999999999875
|
This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few. |
| >cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=298.62 Aligned_cols=328 Identities=15% Similarity=0.210 Sum_probs=245.4
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChH--H
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIA-GMETWE--E 109 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~--~ 109 (550)
.+.|+++++.+. .....++-+...-+..++..++.+++. -...||....+.+|+++...+|.|+| ||.++. .
T Consensus 2 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~vC~ll~~~~V~aiIfgp~~~~~~~ 77 (362)
T cd06378 2 GLNIAVVLSGTN----SSTAFLRGRLTKEDFLDLPLDVNVVTLLVNETDPKSILTQLCDLLSTTKVHGVVFEDDTDQEAV 77 (362)
T ss_pred CceEEEEecCCC----cchhhhccccccccccCCCCCccceeeecCCCCHHHHHHHHHHHhcccceEEEEecCCCCcccc
Confidence 478999998762 122222222221121113344444433 36689999999999999866799755 999887 3
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCc--ccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPL--SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
+..++.++++++||+|++++. ++. .++..+||++|+.|++..+++|+++++++|+|++|++||++++.+ ..+.+
T Consensus 78 a~~~s~~~~~~~vP~is~~~~--s~~~ls~~~~~p~flr~~Psd~~q~~Ai~~Ii~~f~W~~v~iV~~~~~g~--~~~~~ 153 (362)
T cd06378 78 AQILDFISAQTFLPILGIHGG--SSMIMAAKDSGSTFLQFGPSIEQQAAVMLKIMEEYDWHAFSVVTSRFPGY--DDFVS 153 (362)
T ss_pred chhhhhhhhceeccEEEeccc--ccccccCCCCCceEEEeCCCHHHHHHHHHHHHHHCCCeEEEEEEEcCCCH--HHHHH
Confidence 345666777799999999876 442 355788999999999999999999999999999999999998755 77788
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+...+ +++.....++... ..+.+....++++++.++++||+ +|+.+.+..++++|.++||++++|+||++
T Consensus 154 ~l~~~~~~~~-~~~~i~~~~~~~~---~~~~~~~~~l~~lk~~~arViVl-~~s~~~a~~if~~A~~~gm~g~~yvWI~t 228 (362)
T cd06378 154 AVRTTVDNSF-VGWELQSVLTLDM---SDDDGDARTQRQLKKLESQVILL-YCSKEEAEYIFRAARSAGLTGPGYVWIVP 228 (362)
T ss_pred HHHHHHhhcc-cceeEEEEEeecc---CCCcchHHHHHHHHhcCCCEEEE-ECCHHHHHHHHHHHHHcCCcCCCeEEEec
Confidence 8888877766 6655443333221 02234678889999999999999 99999999999999999999999999999
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
+......+. ...++..|.+++.. ++|+. ...+..||||+++++|++.+.
T Consensus 229 ~~~~~~~~~---~~~~~~~G~i~v~~-------------~~w~~---------------~~~a~~~DaV~vva~Al~~l~ 277 (362)
T cd06378 229 SLVLGNTDL---GPSEFPVGLISVSY-------------DGWRY---------------SLRARVRDGVAIIATGASAML 277 (362)
T ss_pred ccccCCCcc---ccccCCcceEeecc-------------ccccc---------------cHHHHHHHHHHHHHHHHHHHH
Confidence 986654221 11244567665432 11110 125678999999999998653
Q ss_pred c-----------C-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC-CeeeEEEEEeCCCCCc
Q 008863 348 Y-----------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG-KKYKELDFWLPNFGFS 408 (550)
Q Consensus 348 ~-----------~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~-~~~~~vG~w~~~~g~~ 408 (550)
. | |..|..|.++|++++|+|+ +|+|+++|.|.++.|+|++++. .+|++||.|+. .++.
T Consensus 278 ~~~~~~~~~~~~C~~~~~~~~~~G~~l~~~l~~v~~~G~--~i~F~~~G~r~~~~ldIinl~~~~g~~kVG~W~~-~~L~ 354 (362)
T cd06378 278 RQHGFIPEAKGSCYGQAEKRDLPPNTLHRYMMNVTWEGR--DLSFTEDGYLVNPKLVVISLNKERVWEEVGKWEN-GSLR 354 (362)
T ss_pred hccCCCCCCCCCcCCCCCCCCCchHHHHHHhhcceECCC--ceeECCCCeEccceEEEEEecCCCCceEEEEEcC-CeEE
Confidence 1 1 5678999999999999996 9999999999999999999996 69999999993 4544
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in |
| >cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=298.43 Aligned_cols=325 Identities=19% Similarity=0.296 Sum_probs=273.4
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC------CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS------RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~------~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
|||+++|++ +..|.....|+++|++++|.++ .|++|+++++|+++++..+.+.+.+|+.+++|.+|+||.+
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~ggi~~g~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG~~~ 80 (345)
T cd06338 1 RIGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYDDQSNPARAARAYERLITQDKVDFLLGPYS 80 (345)
T ss_pred CeeEEEeCCCccccccHHHHHHHHHHHHHHHhcCCcccCCCCceEEEEEecCCCCHHHHHHHHHHHHhhcCccEEecCCc
Confidence 699999999 5668889999999999999964 3689999999999999999999999998779999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC--CeEEEEEEEcCCCCCcch
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN--WRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~--w~~v~ii~~~~~~g~~~~ 184 (550)
+..+.+++++++..+||+|+++++ ++......+|++||+.|++..+..++++++.+++ |+++++++.+++|| ..
T Consensus 81 s~~~~a~~~~~~~~~vp~i~~~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g--~~ 156 (345)
T cd06338 81 SGLTLAAAPVAEKYGVPMVAGSGA--SDSIFAQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILYADDPFS--QD 156 (345)
T ss_pred chhHHHHHHHHHHhCCcEEecCCC--CchHhhcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEecCCccc--HH
Confidence 999999999999999999999887 5655556789999999999999999999999887 99999999999999 99
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
..+.+.+.+++.| ++|.....++.. .+|++.++++|++.++|+|++ .+.......+++++++.|+..+ ..+
T Consensus 157 ~~~~~~~~~~~~g-~~v~~~~~~~~~------~~d~~~~v~~l~~~~~d~i~~-~~~~~~~~~~~~~~~~~g~~~~-~~~ 227 (345)
T cd06338 157 VAEGAREKAEAAG-LEVVYDETYPPG------TADLSPLISKAKAAGPDAVVV-AGHFPDAVLLVRQMKELGYNPK-ALY 227 (345)
T ss_pred HHHHHHHHHHHcC-CEEEEEeccCCC------ccchHHHHHHHHhcCCCEEEE-CCcchhHHHHHHHHHHcCCCCC-EEE
Confidence 9999999999999 999887767653 368999999999999999999 9999999999999999999764 222
Q ss_pred EEeccch-h-hcccCChhHHhhcCceEEEEeecCCC------ChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHH
Q 008863 265 IVTNTVA-N-ALDSLNTTVISSMEGTLGIKSYYSDD------SSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSI 336 (550)
Q Consensus 265 i~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav 336 (550)
. +..+. . ... ......+|++....+.+.. .|..++|.++|+++|. ..|+.++..+||++
T Consensus 228 ~-~~~~~~~~~~~----~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~y~a~ 294 (345)
T cd06338 228 M-TVGPAFPAFVK----ALGADAEGVFGPTQWTPALDYKDDLFPSAAEFAAAYKEKYG--------KAPDYHAAGAYAAG 294 (345)
T ss_pred E-ecCCCcHHHHH----HHhhhhCceeecceeccCcccccccCccHHHHHHHHHHHhC--------CCCCcccHHHHHHH
Confidence 2 22211 1 111 1123356777655544332 3778999999988873 34667788999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEE
Q 008863 337 KIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVN 389 (550)
Q Consensus 337 ~~~a~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~ 389 (550)
+++++|+++++.. +++.+.++|++++|+|++|++.|+++|++. ..+.+++
T Consensus 295 ~~~~~a~~~ag~~--~~~~v~~al~~~~~~~~~G~~~f~~~~~~~-~~~~~~~ 344 (345)
T cd06338 295 QVLQEAVERAGSL--DPAAVRDALASNDFDTFYGPIKFDETGQNN-HPMTVVQ 344 (345)
T ss_pred HHHHHHHHHhCCC--CHHHHHHHHHhCCCcccccCeeECCCCCcC-CCceeee
Confidence 9999999999876 899999999999999999999999988875 3555554
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally. |
| >cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=297.89 Aligned_cols=322 Identities=20% Similarity=0.263 Sum_probs=269.5
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|||+++|++ +..|.....|+++|++++|+++ +|++|+++++|++++|..+.+.+++|+.+++|.+|+||.++..+
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~ggi~g~~v~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 80 (344)
T cd06345 1 KIGVLAPLSGGASTTGEAMWNGAELAAEEINAAGGILGRKVELVFEDTEGSPEDAVRAFERLVSQDKVDAVVGGYSSEVV 80 (344)
T ss_pred CeeEEEecCCcccccCHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEECCcchHHH
Confidence 599999999 5678999999999999999987 58999999999999999999999999987799999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCccc----CCCCCeEEEEecCcHHhHHHHHHHHHH-----cCCeEEEEEEEcCCCCC
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSM----SRRWPYLIRMASNDSEQMKCIADLARK-----YNWRRVAAIYEDNVYGG 181 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~al~~~l~~-----~~w~~v~ii~~~~~~g~ 181 (550)
.+++++++..++|+|+++++ ++... ...+|++||+.|++..+..++++++.+ ++|++|++++++++||
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~--~~~~t~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~~~~g- 157 (344)
T cd06345 81 LALQDVAAENKVPFIVTGAA--SPEITTADDYETYKYVFRAGPTNSSYAQSVADALKETLVDKHGFKTAAIVAEDAAWG- 157 (344)
T ss_pred HHHHHHHHHcCCcEEeccCC--CCcccccccccCCceEEecCCCcHHHHHHHHHHHHHhhcccCCCceEEEEecCchhh-
Confidence 99999999999999998877 55533 457899999999999999999999876 8999999999999999
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
....+.+++.+++.| ++|+....++.. ..|++.++.+|++.++++|++ .+.......+++++.++|+..+
T Consensus 158 -~~~~~~~~~~~~~~G-~~vv~~~~~~~~------~~d~~~~v~~l~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~- 227 (344)
T cd06345 158 -KGIDAGIKALLPEAG-LEVVSVERFSPD------TTDFTPILQQIKAADPDVIIA-GFSGNVGVLFTQQWAEQKVPIP- 227 (344)
T ss_pred -hHHHHHHHHHHHHcC-CeEEEEEecCCC------CCchHHHHHHHHhcCCCEEEE-eecCchHHHHHHHHHHcCCCCc-
Confidence 999999999999999 999987777663 368999999999999999999 9898899999999999998542
Q ss_pred EEEEEeccchhhcccCChhHHhhcCceEEEEeecC---CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHH
Q 008863 262 SVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYS---DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKI 338 (550)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~ 338 (550)
++....+....... .......++.+....+.+ ..++..++|.++|+++| +..|+.+++.+||++++
T Consensus 228 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~--------g~~p~~~~~~~yda~~~ 296 (344)
T cd06345 228 --TIGISVEGNSPAFW-KATNGAGNYVITAESGAPGVEAITDKTVPFTEAYEAKF--------GGPPNYMGASTYDSIYI 296 (344)
T ss_pred --eEEecCCcCCHHHH-HhhchhcceEEeecccccCccCCCHHHHHHHHHHHHHh--------CCCCcccchHHHHHHHH
Confidence 33322221110000 111233455554433332 23577888988888887 34577888999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCC
Q 008863 339 ITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNAD 383 (550)
Q Consensus 339 ~a~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~ 383 (550)
+++|+++++.. +++.+.++|++.+|+|++|+++||++|++...
T Consensus 297 l~~A~~~ag~~--~~~~i~~al~~~~~~g~~G~i~f~~~g~~~~~ 339 (344)
T cd06345 297 LAEAIERAGST--DGDALVEALEKTDFVGTAGRIQFYGDDSAFAH 339 (344)
T ss_pred HHHHHHHhcCC--CHHHHHHHHHhCCCcCCceeEEECCCCCcCcC
Confidence 99999999876 89999999999999999999999999998643
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=291.05 Aligned_cols=302 Identities=20% Similarity=0.285 Sum_probs=256.4
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|||+++|++ +..|.....|+++|+++||+.+ .|++|+++++|++++|..+.+.+.+|+.+++|.+|+||.+|..+
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~iel~~~D~~~~p~~a~~~a~~li~~~~v~~viG~~~s~~~ 80 (312)
T cd06346 1 KIGILLPLTGDLASYGPPMADAAELAVKEVNAAGGVLGEPVTLVTADTQTDPAAGVAAATKLVNVDGVPGIVGAACSGVT 80 (312)
T ss_pred CceeeccCCCchhhcChhHHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCEEEccccchhh
Confidence 699999999 4567889999999999999988 58999999999999999999999999987899999999999999
Q ss_pred HHH-HHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 111 AVV-AEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 111 ~~v-~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
.++ ++++.+.++|+|+++++ ++.+. +..++|+||+.|++..++.++++++.+++|+++++|+++++|| +...+.
T Consensus 81 ~a~~~~~~~~~~vp~i~~~~~--~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~~~~~g--~~~~~~ 156 (312)
T cd06346 81 IAALTSVAVPNGVVMISPSST--SPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGYKSVATTYINNDYG--VGLADA 156 (312)
T ss_pred HhhhhhhhccCCcEEEecCCC--CccceecCCCceEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEccCchh--hHHHHH
Confidence 999 89999999999999888 66644 4557899999999999999999999999999999999999999 999999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| ++|+....++.. ..|+.++++++++.++|+|++ .+.+..+..++++++++|+.. .|+.++
T Consensus 157 ~~~~~~~~G-~~vv~~~~~~~~------~~d~~~~v~~l~~~~pd~v~~-~~~~~~~~~~~~~~~~~G~~~---~~~~~~ 225 (312)
T cd06346 157 FTKAFEALG-GTVTNVVAHEEG------KSSYSSEVAAAAAGGPDALVV-IGYPETGSGILRSAYEQGLFD---KFLLTD 225 (312)
T ss_pred HHHHHHHcC-CEEEEEEeeCCC------CCCHHHHHHHHHhcCCCEEEE-ecccchHHHHHHHHHHcCCCC---ceEeec
Confidence 999999999 999988877764 379999999999999999999 888889999999999999954 466655
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
.+... ...........+|+++..++.+ .+..++|.++|+++| +..|+.+++.+||+++++++|
T Consensus 226 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~--~~~~~~f~~~~~~~~--------g~~p~~~~~~~Yd~~~~l~~A------ 288 (312)
T cd06346 226 GMKSD-SFLPADGGYILAGSYGTSPGAG--GPGLEAFTSAYKAAY--------GESPSAFADQSYDAAALLALA------ 288 (312)
T ss_pred cccCh-HHHHhhhHHHhCCcEEccCCCC--chhHHHHHHHHHHHh--------CCCCCccchhhHHHHHHHHHH------
Confidence 43321 1111111245677776554322 277889999999887 345778889999999999988
Q ss_pred CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceE
Q 008863 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLR 386 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~ 386 (550)
|.|++|+++|+++|++. ..|+
T Consensus 289 ----------------~~g~~g~~~f~~~g~~~-~~~~ 309 (312)
T cd06346 289 ----------------YQGASGVVDFDENGDVA-GSYD 309 (312)
T ss_pred ----------------hCCCccceeeCCCCCcc-ccee
Confidence 89999999999999875 3554
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=288.58 Aligned_cols=325 Identities=18% Similarity=0.316 Sum_probs=265.6
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|||+++|++ +..|.....|+++|++++|+.+ .|++|++++.|++++|..+.+.+++|+.+++|.+|+||.++..+
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi~G~~v~lv~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~~~ 80 (344)
T cd06348 1 PLGVALALTGNAALYGQEQLAGLKLAEDRFNQAGGVNGRPIKLVIEDSGGDEAEAINAFQTLINKDRVLAIIGPTLSQQA 80 (344)
T ss_pred CeeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCCcCCcEEEEEEecCCCChHHHHHHHHHHhhhcCceEEECCCCcHHH
Confidence 699999999 5678999999999999999988 58999999999999999999999999987799999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHH-HHHHHHc-CCeEEEEEEEcCC-CCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCI-ADLARKY-NWRRVAAIYEDNV-YGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al-~~~l~~~-~w~~v~ii~~~~~-~g~~~~~~~ 187 (550)
.++.++++..+||+|+++++ ++.. ...++|+||+.|++..+...+ ..+++++ +|+++++||++++ || ....+
T Consensus 81 ~a~~~~~~~~~ip~i~~~~~--~~~~-~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~g--~~~~~ 155 (344)
T cd06348 81 FAADPIAERAGVPVVGPSNT--AKGI-PEIGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFYAQDDAFS--VSETE 155 (344)
T ss_pred HhhhHHHHhCCCCEEeccCC--CCCc-CCCCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEEeCCchHH--HHHHH
Confidence 99999999999999998876 4443 345689999987776655444 4556777 9999999998655 99 99999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| ++++....++.. ..|+..++.+++++++++|++ .+....+..+++++++.|+.. .|+.+
T Consensus 156 ~~~~~~~~~g-~~v~~~~~~~~~------~~d~~~~v~~i~~~~~d~vi~-~~~~~~~~~~~~~~~~~g~~~---~~~~~ 224 (344)
T cd06348 156 IFQKALRDQG-LNLVTVQTFQTG------DTDFQAQITAVLNSKPDLIVI-SALAADGGNLVRQLRELGYNG---LIVGG 224 (344)
T ss_pred HHHHHHHHcC-CEEEEEEeeCCC------CCCHHHHHHHHHhcCCCEEEE-CCcchhHHHHHHHHHHcCCCC---ceecc
Confidence 9999999999 999988777763 379999999999999999999 999999999999999999975 34544
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
..+... .. .....+..+|++....+.+. ..+..++|.+.|+++|. ..++.++..+||+++++++|++++
T Consensus 225 ~~~~~~-~~-~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~~~~yda~~~~~~A~~~a 294 (344)
T cd06348 225 NGFNTP-NV-FPVCQAACDGVLVAQAYSPENDTPVNRDFVEAYKKKYG--------KAPPQFSAQAFDAVQVVAEALKRL 294 (344)
T ss_pred ccccCH-HH-HHhhhHhhcCeEEEeeccCCCCCHHHHHHHHHHHHHHC--------CCccHHHHHHHHHHHHHHHHHHHh
Confidence 433211 11 11122456777766655432 33668888888888773 356677889999999999999999
Q ss_pred ccCC-CC-------HHHHHHHHHhCcccccceeEEEeCCCCCCCCceE
Q 008863 347 NYNI-SS-------PEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLR 386 (550)
Q Consensus 347 ~~~~-~~-------~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~ 386 (550)
+.+. .+ +..|.++|++.+|.|++|++.|+++|++.+..|-
T Consensus 295 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~g~~G~v~f~~~g~~~~~~~~ 342 (344)
T cd06348 295 NQKQKLAELPLPELRTALNAALLSGQYDTPLGEISFTPDGEVLQKAFY 342 (344)
T ss_pred cCCCccccchhhhHHHHHHHHHhccCCccceeeeEECCCCCcccCcee
Confidence 7531 11 5688999999999999999999999998766554
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=278.06 Aligned_cols=320 Identities=14% Similarity=0.205 Sum_probs=233.1
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEEec-CCCCHHHHHHHHHHhh-hcCCeEEEEcC-CC
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRD-HNRDPFQAATAAQELI-NKEKVKVIAGM-ET 106 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d-~~~~~~~a~~~~~~li-~~~~v~aiiG~-~~ 106 (550)
..|+||+||+.. ...+.||++|++.+|.+. .+++|++++.. ...|++.+.+.+|+++ + .||.||+|+ .+
T Consensus 17 ~~i~iG~if~~~----~~~~~af~~Av~~~N~~~~l~~~~~L~~~~~~~~~~dsf~~~~~vC~~ll~-~GV~AIfg~p~s 91 (382)
T cd06377 17 HTVRLGALLVRA----PAPRDRVLAALARANRAPLLPYNLSLEVVAAAAPSRDPASLLRSVCQTVVV-QGVSALLAFPQT 91 (382)
T ss_pred CceeeeEEecCC----chHHHHHHHHHHHhccccccccCceeEEeEEEcCCCChHHHHHHHHHhHhh-CCeEEEEecCCC
Confidence 469999999865 457899999999999886 46899888874 5679999999999995 6 699999994 77
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
+..+..+.++|+.++||+|+++.. ++.. +...+.+.+++.|+..+++.|+++++++|+|++|++||+.+... ..+
T Consensus 92 ~~~~~~v~sic~~l~IP~I~~~~~--~~~~~~~~~~~l~L~l~P~~~~l~~a~~~ll~~~~W~~f~~iy~~~~gl--~~l 167 (382)
T cd06377 92 RPELVQLDFVSAALEIPVVSIVRR--EFPRGSQNPFHLQMSWASPLSTLLDVLLSVLQRNGWEDVSLVLCRERDP--TGL 167 (382)
T ss_pred HHHHHHHHHHhcCCCCCEEEecCC--cccccCCCceeEEEEecCCHHHHHHHHHHHHHHCCCcEEEEEEecCcCH--HHH
Confidence 778889999999999999999654 2222 22333334466999999999999999999999999999988733 443
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHH-HHHHHHhhcCC-CeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAV-RGELKKVQDKQ-SRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~-~~~l~~i~~~~-~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (550)
.+.++..... .+.....+......+.+..++ +.+|+++++.. +++|++ +|+.+.+..+|+++.+. |+
T Consensus 168 q~l~~~~~~~----~~~~~i~v~~~~~~~~d~~~~~~~~L~~i~~~~~~~~ill-~cs~e~~~~il~~~~~~------y~ 236 (382)
T cd06377 168 LLLWTNHARF----HLGSVLNLSRNDPSTADLLDFLRAQLELLKDPPGPAVVLF-GCDVARARRVLELTPPG------PH 236 (382)
T ss_pred HHHHHHhccc----ccCceEEEEeccCccCChhHHHHHHHHHhhcccCceEEEE-ECCHHHHHHHHHhhccc------eE
Confidence 3333332221 111112221110000123455 99999999998 999999 99999999999887763 99
Q ss_pred EEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHH
Q 008863 264 WIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI 343 (550)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al 343 (550)
||+++.. +........+.-|.+.. .. . ......+++||||+++++|+
T Consensus 237 wIv~~~~----~le~~~~~g~nigLl~~---~~-~-------------------------~~~~l~ali~DAV~lvA~a~ 283 (382)
T cd06377 237 WILGDPL----PPEALRTEGLPPGLLAH---GE-T-------------------------TQPPLEAYVQDALELVARAV 283 (382)
T ss_pred EEEcCCc----ChhhccCCCCCceEEEE---ee-c-------------------------ccccHHHHHHHHHHHHHHHH
Confidence 9998721 11100001112232211 00 0 01123789999999999999
Q ss_pred Hhhc-------------c--------CCCCHHHHHHHHHhCcccccceeEEEeCCCCC--CCCceEEEEee--CC---ee
Q 008863 344 GRLN-------------Y--------NISSPEMLLRQMLSSDFSGLSGKIRFKDGELL--NADTLRIVNVV--GK---KY 395 (550)
Q Consensus 344 ~~~~-------------~--------~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~--~~~~~~i~~~~--~~---~~ 395 (550)
+.+. . .|..|..|.++|++++|+|+||+|.|+ +|.| .++.++|++++ .. .|
T Consensus 284 ~~l~~~~~~~~l~~~~~~C~~~~~~~~W~~G~~l~~~Lknv~~eGlTG~I~F~-~g~R~~~~~~l~I~~L~~~~~G~~~W 362 (382)
T cd06377 284 GSATLVQPELALIPATVNCMDLPTKGNESSGQYLARFLANTSFDGRTGPVWVT-GSSQVHSSRHFKVWSLRRDPVGQPTW 362 (382)
T ss_pred HHhhhcccccccCCCCCCcccCCCCCCCCchHHHHHHHHhCcccccceeEEEc-cCeeecccceEEEEEeccccCCCccc
Confidence 9751 1 155889999999999999999999994 6788 78999999998 43 35
Q ss_pred eEEEEEeCCCC
Q 008863 396 KELDFWLPNFG 406 (550)
Q Consensus 396 ~~vG~w~~~~g 406 (550)
++||+|++...
T Consensus 363 ~kVG~W~~~~~ 373 (382)
T cd06377 363 TTVGSWQGGRK 373 (382)
T ss_pred eEEEEecCCCc
Confidence 99999998633
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in |
| >cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=291.39 Aligned_cols=323 Identities=20% Similarity=0.274 Sum_probs=270.3
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC-----CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS-----RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~-----~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
|||+++|++ +..|.....|+++|++++|+.+ +|++|+++++|+++++..+.+.+++++.+++|.+|+||.++
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 80 (347)
T cd06340 1 KIGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGNPDIGATEAERLITEEGVVALVGAYQS 80 (347)
T ss_pred CceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEecccch
Confidence 699999999 4678899999999999999986 47999999999999999999999999987799999999999
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc------CCeEEEEEEEcCCCCC
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY------NWRRVAAIYEDNVYGG 181 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~------~w~~v~ii~~~~~~g~ 181 (550)
..+.+++++++..++|+|+++++ ++......+||+||+.|++..+..++++++.++ +|+++++|+++++||
T Consensus 81 ~~~~a~~~~~~~~~ip~i~~~~~--~~~l~~~~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~g- 157 (347)
T cd06340 81 AVTLAASQVAERYGVPFVVDGAV--SDSITERGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFG- 157 (347)
T ss_pred HhHHHHHHHHHHhCCCEEecccc--chHHhhcCCceEEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecCchHh-
Confidence 99999999999999999999887 566556678999999999999999999999876 469999999999999
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
....+.+++.+++.| ++|+....++.. ..|+..+++++++.++|+|++ .+....+..+++++++.|+..+
T Consensus 158 -~~~~~~~~~~~~~~G-~~vv~~~~~~~~------~~d~~~~i~~l~~~~~d~v~~-~~~~~~~~~~~~~~~~~G~~~~- 227 (347)
T cd06340 158 -TSVAEAIKKFAKERG-FEIVEDISYPAN------ARDLTSEVLKLKAANPDAILP-ASYTNDAILLVRTMKEQRVEPK- 227 (347)
T ss_pred -HHHHHHHHHHHHHcC-CEEEEeeccCCC------CcchHHHHHHHHhcCCCEEEE-cccchhHHHHHHHHHHcCCCCc-
Confidence 999999999999999 999988777753 369999999999999999999 9999999999999999999764
Q ss_pred EEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHH
Q 008863 262 SVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITE 341 (550)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~ 341 (550)
.++......... .+ .....+..+|.+...++.....+..++|.++|+++|. ..++.++..+||+++++++
T Consensus 228 ~~~~~~~~~~~~-~~-~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~y~~~~~--------~~~~~~~~~~Y~a~~~l~~ 297 (347)
T cd06340 228 AVYSVGGGAEDP-SF-VKALGKDAEGILTRNEWSDPKDPMAKDLNKRFKARFG--------VDLSGNSARAYTAVLVIAD 297 (347)
T ss_pred EEEecCCCcCcH-HH-HHHhhHhhheEEeccccCCCCChHHHHHHHHHHHHhC--------CCCChHHHHHHHHHHHHHH
Confidence 222222211110 00 0112245678887766555445788899999988873 3467788999999999999
Q ss_pred HHHhhccCCCCHHHHH--HHHHhCccc---ccceeEEEeCCCCCCCC
Q 008863 342 AIGRLNYNISSPEMLL--RQMLSSDFS---GLSGKIRFKDGELLNAD 383 (550)
Q Consensus 342 Al~~~~~~~~~~~~l~--~~l~~~~~~---G~tG~i~f~~~g~~~~~ 383 (550)
|++++++. ++..+. .+|++..+. +.+|+++||++|+..+.
T Consensus 298 A~~~ag~~--~~~~v~~~~~~~~~~~~~~~~~~g~~~f~~~g~~~~~ 342 (347)
T cd06340 298 ALERAGSA--DPEKIRDLAALASTSGEDLIMPYGPIKFDAKGQNTNA 342 (347)
T ss_pred HHHHhcCC--CHHHHHHHHHhccCCccccccCCCCeeECCCCCcccc
Confidence 99999876 899999 488877765 56889999999987654
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=284.28 Aligned_cols=337 Identities=15% Similarity=0.183 Sum_probs=274.0
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||++.|++ +..|.....|+++|+++||+.+ .|++|+++++|++++|..+.+.+.+|+.+++|.+|+|+.+|..+
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iN~~GGi~G~~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~iiG~~~S~~~ 80 (348)
T cd06355 1 KVGILHSLSGTMAISETTLKDAELLAIEEINAAGGVLGRKIEAVVEDGASDWPTFAEKARKLLTQDKVAAVFGCWTSASR 80 (348)
T ss_pred CeEEEEcCCCcccccchhHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCCCcEEEeccchhhH
Confidence 699999999 4668889999999999999998 58999999999999999999999999988899999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.++.+++.+.++|++++... .. ...+||+||+.+.+..+...+++++.. .+++++++|+.|++|| ....+.+
T Consensus 81 ~a~~~~~~~~~~~~i~~~~~--~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~vaii~~d~~~g--~~~~~~~ 153 (348)
T cd06355 81 KAVLPVFERHNGLLFYPVQY--EG---LEQSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRFYLVGSDYVYP--RTANKIL 153 (348)
T ss_pred HHHHHHHhccCCceecCCCc--cC---CCCCCCEEEeCCChHHhHHHHHHHHHhccCCCeEEEECCcchHH--HHHHHHH
Confidence 99999999999999986543 21 235689999999999999999999865 5799999999999999 9999999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| ++++....++.. ..|+..++.++++.++|+|++ ...+..+..+++++++.|+.+....++....
T Consensus 154 ~~~~~~~G-~~vv~~~~~~~~------~~D~~~~v~~l~~~~pd~v~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 225 (348)
T cd06355 154 KAQLESLG-GEVVGEEYLPLG------HTDFQSIINKIKAAKPDVVVS-TVNGDSNVAFFKQLKAAGITASKVPVLSFSV 225 (348)
T ss_pred HHHHHHcC-CeEEeeEEecCC------hhhHHHHHHHHHHhCCCEEEE-eccCCchHHHHHHHHHcCCCccCCeeEEccc
Confidence 99999999 999988877763 489999999999999999999 8888899999999999999765444554332
Q ss_pred chhhcccCChhHHhhcCceEEEEeec-CCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYY-SDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
....+.... .....|.+....+. ....|..++|.++|+++|... ..++..++.+||+++++++|+++++.
T Consensus 226 ~~~~~~~~g---~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~g~~------~~~~~~a~~~Y~a~~~~~~Al~~ag~ 296 (348)
T cd06355 226 AEEELRGIG---PENLAGHYAAWNYFQSVDTPENKKFVAAFKARYGQD------RVTNDPMEAAYIGVYLWKQAVEKAGS 296 (348)
T ss_pred cHHHHhhcC---hHhhcCCEEeccchhhcCCHHHHHHHHHHHHHcCCC------CCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 221111111 13456665443332 224477888988888887421 12345677899999999999999987
Q ss_pred CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEE
Q 008863 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKEL 398 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~v 398 (550)
. +++.++++|++.+|.+..|.++|++.++.....+.+.+++ +++++.|
T Consensus 297 ~--~~~~i~~aL~~~~~~~~~g~~~f~~~~~~~~~~~~i~~~~~~g~~~~v 345 (348)
T cd06355 297 F--DVDKVRAALPGQSFDAPEGPVTVDPANHHLWKPVRIGRIQADGQFEIV 345 (348)
T ss_pred C--CHHHHHHHhccCcccCCCcceEeecCCCeeeeeeEEEEEcCCCcEEEE
Confidence 6 9999999999999999999999998555444566677775 5665544
|
This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems. |
| >cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=291.44 Aligned_cols=314 Identities=14% Similarity=0.185 Sum_probs=229.8
Q ss_pred ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecC-------CCCHHHHHHHHHHhhhcCCe--EEEEcCCChHHHHHHHHh
Q 008863 46 QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDH-------NRDPFQAATAAQELINKEKV--KVIAGMETWEETAVVAEI 116 (550)
Q Consensus 46 ~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~-------~~~~~~a~~~~~~li~~~~v--~aiiG~~~s~~~~~v~~~ 116 (550)
..|...+.||++|++++|++. +.++.+.+.+. +.|...+.+++|++++ +++ .|||||.++..+..++++
T Consensus 9 ~~~~~~~~A~~~Av~~~N~~~-~~~l~~~~~~~~~~~~~~~~d~~~~~~~~C~~~~-~gv~~~AIiGp~ss~~a~~V~si 86 (368)
T cd06383 9 DDNDVYKQIIDDALSYINRNI-GTGLSVVHQQVETNAEVNRNDVKVALIEVCDKAD-SAIVPHLVLDTTTCGDASEIKSV 86 (368)
T ss_pred cchHHHHHHHHHHHHHHhcCC-CCceEEEEecccccccccCCcHHHHHHHHHHHHH-ccCCcEEEECCCcchhHHHHHHH
Confidence 357889999999999999884 77777777765 4577788888999997 577 899999999999999999
Q ss_pred hccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcc-hhHHHHHHHHhc
Q 008863 117 ASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDS-GKLALLAEALQN 195 (550)
Q Consensus 117 ~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~-~~~~~l~~~l~~ 195 (550)
|+.++||+|++++. .. ...++||++|+.|++..+.+|+++++++|+|++|++||++++.. . ...+.+++...+
T Consensus 87 ~~~~~IP~Is~s~~--~~--~~~~~p~~ir~~Ps~~~~~~Ai~dlI~~f~W~~v~iIYddd~gl--~~~l~~~l~~~~~~ 160 (368)
T cd06383 87 TGALGIPTFSASYG--QE--GDLEQPYLIQLMPPADDIVEAIRDIVSYYNITNAAILYDDDFVM--DHKYKSLLQNWPTR 160 (368)
T ss_pred HhccCCCEEEccCC--Cc--CcccCceEEEEeCChHHHHHHHHHHHHHCCCcEEEEEEEcCchh--hHHHHHHHHhHHhc
Confidence 99999999998654 21 22478999999999999999999999999999999999776632 3 233334333444
Q ss_pred CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcc
Q 008863 196 VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALD 275 (550)
Q Consensus 196 ~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 275 (550)
.+ .++. +. ...+++..+++|++.+.+.||+.++.++.+..++++|.++||++++|+||+++......+
T Consensus 161 ~~-~~v~-----~~------~~~~~~~~Lk~lk~~~~~rIIi~~s~~~~~~~il~qA~~lgm~~~~y~wilt~ld~~~~d 228 (368)
T cd06383 161 HV-ITII-----NS------IIDEVREQIKRLRNLDIKNIFILGSTEEIIRYVLDQALAEGFMGRKYAWFLGNPDLGIYD 228 (368)
T ss_pred CC-EEEE-----ec------cchhHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHcCCcCCceEEEEcCCCchhhh
Confidence 44 4442 11 125688999999998885665514446999999999999999999999999998665433
Q ss_pred cCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc------C
Q 008863 276 SLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY------N 349 (550)
Q Consensus 276 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~------~ 349 (550)
+... .....++.+++...+.. ...+++..++.+. ..+.....+....++++||||+++++|++.+.. |
T Consensus 229 l~~~--~~~~~Nitgfrl~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~aL~~Dav~~~~~a~~~l~~~~~~~~~ 302 (368)
T cd06383 229 DLSC--QLRNASIFVTRPMMDYQ-SSVRGALLRTDEP---TLRPVFYFEWAFRLFLAYDAVLAVGEWPRRMRKKRVEDGS 302 (368)
T ss_pred hhhh--ccccCcEEEeeccccch-hhhccceeeccCC---ccCchhHHHHHHHHHHHHHHHHHhccccchhheeeccCCC
Confidence 3211 11123466777643333 3335555543110 001111123446799999999999999996421 1
Q ss_pred ------CCC-----------HHHHHHHHHhCcccccceeEEEeCCCCCCCCce
Q 008863 350 ------ISS-----------PEMLLRQMLSSDFSGLSGKIRFKDGELLNADTL 385 (550)
Q Consensus 350 ------~~~-----------~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~ 385 (550)
|.. |..+.++|++++|+|+||+|+||++|.|.++.+
T Consensus 303 ~~~~~~~~~g~~~~~~w~~~g~~~~~~~k~~~~~gltG~i~f~~~g~R~~~~l 355 (368)
T cd06383 303 TGTSVLPGFGISPESPLMTLQSSPFNGSSEIKFEMLAGRVAIDEGSSVSTKTI 355 (368)
T ss_pred cCccccCCCCCCcccchhhcccccccCccceeEeeecCeEEEecCceeeeeee
Confidence 222 338999999999999999999999999865433
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current. |
| >cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=287.62 Aligned_cols=306 Identities=26% Similarity=0.428 Sum_probs=254.8
Q ss_pred EEEEEEecCC-------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhc----
Q 008863 36 KIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINK---- 95 (550)
Q Consensus 36 ~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~---- 95 (550)
.||++||.+. ..|.....++.+|++++|+++ +|++|++++.|+++++..+.+.+++++.+
T Consensus 1 ~ig~lf~~~~~~~~~~~~c~~~~~~~~~~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~~ 80 (348)
T cd06350 1 IIGGLFPLHSGSESVSLKCGRFGKKGLQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCCSPAVALRAALDLLLSGEGT 80 (348)
T ss_pred CeEEEEeCcccccCCCcccceechHHHHHHHHHHHHHHHHcCCCccCCCCceeEEEEecCCcchHHHHHHHHHHhcCCCC
Confidence 3788998884 345677789999999999985 68999999999999999999999999987
Q ss_pred ---------CCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHc
Q 008863 96 ---------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKY 165 (550)
Q Consensus 96 ---------~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~ 165 (550)
+++.+|+||.+|..+.+++++++.+++|+|+++++ ++.+ ++..+||+||+.|++..++.+++++++++
T Consensus 81 ~~~~~~~~~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is~~~~--~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~~~~~ 158 (348)
T cd06350 81 TPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQISYGAT--SPLLSDKLQFPSFFRTVPSDTSQALAIVALLKHF 158 (348)
T ss_pred CCCCcCCCCCceEEEECCCccHHHHHHHHHHhcCcCceecccCC--ChhhccccccCCeeEecCCcHHHHHHHHHHHHHC
Confidence 79999999999999999999999999999999988 6664 56678999999999999999999999999
Q ss_pred CCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHH
Q 008863 166 NWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (550)
Q Consensus 166 ~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~ 245 (550)
+|+++++|+++++|| ....+.+++.+++.| +++...+.++... ...|+..+++++++.++|+|++ .+....+
T Consensus 159 ~~~~v~~l~~~~~~g--~~~~~~~~~~~~~~g-i~v~~~~~~~~~~----~~~d~~~~l~~l~~~~~~vvv~-~~~~~~~ 230 (348)
T cd06350 159 GWTWVGLVYSDDDYG--RSGLSDLEEELEKNG-ICIAFVEAIPPSS----TEEDIKRILKKLKSSTARVIVV-FGDEDDA 230 (348)
T ss_pred CCeEEEEEEecchhH--HHHHHHHHHHHHHCC-CcEEEEEEccCCC----cHHHHHHHHHHHHhCCCcEEEE-EeCcHHH
Confidence 999999999999999 999999999999999 9999888887642 2579999999999999999999 9999999
Q ss_pred HHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCC
Q 008863 246 IHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHP 325 (550)
Q Consensus 246 ~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 325 (550)
..++++++++|+ +.. .|+.++.|....... ....+..+|++++..+.+.. ....+|.+.+++
T Consensus 231 ~~~~~~a~~~g~-~~~-~~i~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~f~~~~~~-------------- 292 (348)
T cd06350 231 LRLFCEAYKLGM-TGK-YWIISTDWDTSTCLL-LFTLDAFQGVLGFSGHAPRS-GEIPGFKDFLRK-------------- 292 (348)
T ss_pred HHHHHHHHHhCC-CCe-EEEEEccccCccccc-cCCcceeeeEEEEEEEeecC-CcCCChHHHHHH--------------
Confidence 999999999999 443 555655554331111 11225577888777665432 223334443333
Q ss_pred CchhhHHhHHHHHHHHHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC----CeeeEEEEE
Q 008863 326 SIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG----KKYKELDFW 401 (550)
Q Consensus 326 ~~~~~~~yDav~~~a~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~----~~~~~vG~w 401 (550)
+++.+|||+++ .+.|+++|++. ..+.|.+++. ..+++||.|
T Consensus 293 --~~~~~YDav~~--------------------------------~v~f~~~gd~~-~~~~i~~~~~~~~~~~~~~vg~~ 337 (348)
T cd06350 293 --YAYNVYDAVYA--------------------------------EVKFDENGDRL-ASYDIINWQIFPGGGGFVKVGFW 337 (348)
T ss_pred --HHHHHHhheeE--------------------------------EEEecCCCCcc-cceeEEEEEEcCCcEEEEEEEEE
Confidence 47889999998 89999999995 7899998876 689999999
Q ss_pred eCC
Q 008863 402 LPN 404 (550)
Q Consensus 402 ~~~ 404 (550)
++.
T Consensus 338 ~~~ 340 (348)
T cd06350 338 DPQ 340 (348)
T ss_pred cCC
Confidence 974
|
Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr |
| >cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=283.47 Aligned_cols=343 Identities=15% Similarity=0.233 Sum_probs=278.8
Q ss_pred CCCcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCC
Q 008863 31 IEEVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (550)
Q Consensus 31 ~~~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~ 105 (550)
..++|+||+++|++ +..|.....++++|++++|+.+ .|++|+++++|+++++..+.+.+.+|+.+++|.+|+|+.
T Consensus 3 ~~~~i~iG~~~~~sG~~a~~g~~~~~g~~~a~~~~Na~gGi~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~v~avvG~~ 82 (362)
T cd06343 3 TDTEIKIGNTMPLSGPASAYGVIGRTGAAYFFMINNDQGGINGRKIELIVEDDGYSPPKTVEQTRKLVESDEVFAMVGGL 82 (362)
T ss_pred CCceEEEeeccCCCCchhhhcHHHHHHHHHHHHHHHhcCCcCCeEEEEEEecCCCChHHHHHHHHHHHhhcCeEEEEecC
Confidence 34689999999999 4578899999999999999987 589999999999999999999999999878999999999
Q ss_pred ChHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcCCCCCcc
Q 008863 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDS 183 (550)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~~~g~~~ 183 (550)
++..+.++.++++..+||+|++.++ ++... ...+||+||+.|++..++.++++++ ++++|+++++|++++.|| .
T Consensus 83 ~s~~~~~~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g--~ 158 (362)
T cd06343 83 GTPTNLAVQKYLNEKKVPQLFPASG--ASKWNDPKPFPWTFGWQPSYQDEARIYAKYLVEEKPNAKIAVLYQNDDFG--K 158 (362)
T ss_pred CcHHHHHhHHHHHhcCCceEecccc--cHhhhCCCCCCceEecCCChHHHHHHHHHHHHHhCCCceEEEEEeccHHH--H
Confidence 9999999999999999999998776 45543 3478999999999999999999986 567999999999999999 9
Q ss_pred hhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEE
Q 008863 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (550)
Q Consensus 184 ~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (550)
...+.+++.+++.| ++++....++.. ..|+++++.++++.++++|++ .+.......+++++++.|+...
T Consensus 159 ~~~~~~~~~~~~~G-~~vv~~~~~~~~------~~d~~~~v~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~--- 227 (362)
T cd06343 159 DYLKGLKDGLGDAG-LEIVAETSYEVT------EPDFDSQVAKLKAAGADVVVL-ATTPKFAAQAIRKAAELGWKPT--- 227 (362)
T ss_pred HHHHHHHHHHHHcC-CeEEEEeeecCC------CccHHHHHHHHHhcCCCEEEE-EcCcHHHHHHHHHHHHcCCCce---
Confidence 99999999999999 999988877764 379999999999999999999 8889899999999999999763
Q ss_pred EEEeccchhhcccCChhHHhhcCceEEEEeecC------CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHH
Q 008863 264 WIVTNTVANALDSLNTTVISSMEGTLGIKSYYS------DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIK 337 (550)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~ 337 (550)
++.+..+............+..+|.+....+.. ..++..++|.+.|++.+... ..++.++..+||++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~y~a~~ 301 (362)
T cd06343 228 FLLSSVSASVASVLKPAGLEAAEGVIAAAYLKDPTDPAWADDPGVKEFIAFYKKYFPEG------DPPDTYAVYGYAAAE 301 (362)
T ss_pred EEEEecccccHHHHHHhhhHhhCceEEEEEecCCCccccccCHHHHHHHHHHHHhcCCC------CCCchhhhHHHHHHH
Confidence 444443322111011111244677766554321 23467788888887776321 146778889999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHhCcc---ccc-ceeEEEeCCCCCCCCceEEEEeeCCee
Q 008863 338 IITEAIGRLNYNISSPEMLLRQMLSSDF---SGL-SGKIRFKDGELLNADTLRIVNVVGKKY 395 (550)
Q Consensus 338 ~~a~Al~~~~~~~~~~~~l~~~l~~~~~---~G~-tG~i~f~~~g~~~~~~~~i~~~~~~~~ 395 (550)
++++|+++++.. .+++.++++|+++++ .+. .|+++|+..+++....+.|.++++++|
T Consensus 302 ~~~~a~~~ag~~-~~~~~v~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 362 (362)
T cd06343 302 TLVKVLKQAGDD-LTRENIMKQAESLKDVLPDLLPGIRINTSPDDHLPIEQMQLMRFEGGRW 362 (362)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHhCCCCCccccCccceecCccccccceeEEEEEEecCcC
Confidence 999999998753 489999999999987 333 359999876666556788888877654
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=280.23 Aligned_cols=341 Identities=12% Similarity=0.125 Sum_probs=271.1
Q ss_pred EEEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 35 TKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 35 i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
|+||++.|++ +..|....+|+++|++++|+++ .|++|++++.|++++|..+.+.+.+|+.+++|.+|+|+.+|..
T Consensus 1 IkIG~~~plSG~~a~~G~~~~~G~~lAv~~iNa~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~d~v~~viG~~~S~~ 80 (374)
T TIGR03669 1 IKLGVLEDRSGNFALVGTPKWHASQLAIEEINKSGGILGRQIELIDPDPQSDNERYQELTRRLLNRDKVDALWAGYSSAT 80 (374)
T ss_pred CEEEEEeCCCCCchhccHHHHHHHHHHHHHHHhcCCCCCceeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEcCCchHH
Confidence 6999999999 5678899999999999999987 5899999999999999999999999998889999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
+.++.+++.+.++|+|..... . .....+|+||+.|++..+..++++++....-+++++|+++++|| +...+.+
T Consensus 81 ~~A~~~~~~~~~~~~i~~~~~--~---~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g~~va~l~~d~~~g--~~~~~~~ 153 (374)
T TIGR03669 81 REAIRPIIDRNEQLYFYTNQY--E---GGVCDEYTFAVGATARQQLGTVVPYMVEEYGKKIYTIAADYNFG--QLSADWV 153 (374)
T ss_pred HHHHHHHHHhcCceEEcCccc--c---cccCCCCEEEcCCChHHHHHHHHHHHHHcCCCeEEEEcCCcHHH--HHHHHHH
Confidence 999999999999999974422 1 12235899999999999999999998654336899999999999 9889999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| ++++....++.. ..||..++.+|++.++|+|++ .....+...++++++++|+..+ ++....
T Consensus 154 ~~~~~~~G-~~vv~~~~~~~g------~~Df~~~l~~i~~~~pD~V~~-~~~g~~~~~~~kq~~~~G~~~~---~~~~~~ 222 (374)
T TIGR03669 154 RVIAKENG-AEVVGEEFIPLS------VSQFSSTIQNIQKADPDFVMS-MLVGANHASFYEQAASANLNLP---MGTSTA 222 (374)
T ss_pred HHHHHHcC-CeEEeEEecCCC------cchHHHHHHHHHHcCCCEEEE-cCcCCcHHHHHHHHHHcCCCCc---ccchhh
Confidence 99999999 999888877764 489999999999999999999 8888888899999999999643 222111
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
........ ........|++....+... ..|..++|.++|+++|... ..++.+++.+||+++++++|++++++
T Consensus 223 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~F~~~y~~~~g~~------p~~~~~a~~~Yda~~~l~~Ai~~AGs 295 (374)
T TIGR03669 223 MAQGYEHK-RFEPPALKDVYAGVNYMEEIDTPENEAFVERFYAKFPDA------PYINQEAENNYFSVYMYKQAVEEAGT 295 (374)
T ss_pred hhhhhhhh-hcCchhhCCcEEeeeccccCCCHHHHHHHHHHHHHcCCC------CCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 11100000 0001234566554444332 3477889999999887421 12355678899999999999999988
Q ss_pred CCCCHHHHHHHHHh-CcccccceeEEEeCCCCCCCCceEEEEeeC-CeeeEEEEEe
Q 008863 349 NISSPEMLLRQMLS-SDFSGLSGKIRFKDGELLNADTLRIVNVVG-KKYKELDFWL 402 (550)
Q Consensus 349 ~~~~~~~l~~~l~~-~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~-~~~~~vG~w~ 402 (550)
. +++.++++|++ .++.|++|+++|++.++.....+.|.+++. +++..+..|.
T Consensus 296 ~--d~~av~~aL~~~~~~~~~~G~i~fd~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 349 (374)
T TIGR03669 296 T--DQDAVRDVLESGVEMDAPEGKVCIDGATHHMSHTMRLARADADHNITFVKEQE 349 (374)
T ss_pred C--CHHHHHHHHHcCCeEECCCccEEEcCCCCeeeeeeEEEEEcCCCCEEEEEecC
Confidence 6 99999999997 678999999999977665545666777764 4455555555
|
Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization. |
| >cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=277.07 Aligned_cols=318 Identities=22% Similarity=0.316 Sum_probs=265.9
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||+++|++ +..|.....|+++|++++|+++ +|++|++++.|+++++..+.+.+++++.+++|.+|+||.++..+
T Consensus 1 ~iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~l~~~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~~ 80 (334)
T cd06347 1 KIGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGGVLGKKIELVVEDNKSDKEEAANAATRLIDQDKVVAIIGPVTSGAT 80 (334)
T ss_pred CeeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCCChHHHHHHHHHHhcccCeEEEEcCCccHhH
Confidence 699999999 4567889999999999999987 68999999999999999999999999987799999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcC-CCCCcchhHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDN-VYGGDSGKLAL 188 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~-~~g~~~~~~~~ 188 (550)
.+++++++..+||+|+++++ .+..... .+++||+.|++..++.++++++ ++++|+++++|+.++ +|+ ....+.
T Consensus 81 ~~v~~~~~~~~ip~i~~~~~--~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~~~--~~~~~~ 155 (334)
T cd06347 81 LAAGPIAEDAKVPMITPSAT--NPKVTQG-KDYVFRVCFIDPFQGTVMAKFATENLKAKKAAVLYDNSSDYS--KGLAKA 155 (334)
T ss_pred HHhHHHHHHCCCeEEcCCCC--CCCcccC-CCeEEEeeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCchh--HHHHHH
Confidence 99999999999999999887 4543322 3589999999999999999997 568999999999886 788 888899
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| +++.....++.. ..++...++++++.++++|++ .+.......+++++++.|+.. .|+.++
T Consensus 156 ~~~~~~~~g-~~v~~~~~~~~~------~~d~~~~~~~~~~~~~d~i~~-~~~~~~~~~~~~~~~~~g~~~---~i~~~~ 224 (334)
T cd06347 156 FKEAFKKLG-GEIVAEETFNAG------DTDFSAQLTKIKAKNPDVIFL-PGYYTEVGLIAKQARELGIKV---PILGGD 224 (334)
T ss_pred HHHHHHHcC-CEEEEEEEecCC------CCcHHHHHHHHHhcCCCEEEE-cCchhhHHHHHHHHHHcCCCC---cEEecc
Confidence 999999999 999887777653 368999999999999999999 999999999999999999853 567666
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
.|.... . ........+|.+....+... .++..+.|.+.|++++. ..+..++..+||+++++++|+++++
T Consensus 225 ~~~~~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~~~yda~~~~~~Al~~ag 294 (334)
T cd06347 225 GWDSPK-L-EEAGGAAAEGVYFTTHFSADDPTPKAKKFVKAYKAKYG--------KEPDAFAALGYDAYYLLADAIERAG 294 (334)
T ss_pred cccCHH-H-HHHHHHHhCCcEEecccCCCCCCHHHHHHHHHHHHHHC--------CCcchhHHHHHHHHHHHHHHHHHhC
Confidence 654321 1 11123456777666555443 34778888888887763 3567788899999999999999988
Q ss_pred cCCCCHHHHHHHHHhC-cccccceeEEEeCCCCCC
Q 008863 348 YNISSPEMLLRQMLSS-DFSGLSGKIRFKDGELLN 381 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~-~~~G~tG~i~f~~~g~~~ 381 (550)
.. ++..+.+.|.+. +|+|++|+++|+++|+..
T Consensus 295 ~~--~~~~v~~~l~~~~~~~g~~G~v~f~~~g~~~ 327 (334)
T cd06347 295 ST--DPEAIRDALAKTKDFDGVTGKITIDENGNPV 327 (334)
T ss_pred CC--CHHHHHHHHHhCCCcccceeeeEECCCCCcC
Confidence 75 889999998765 799999999999888765
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=279.45 Aligned_cols=318 Identities=16% Similarity=0.200 Sum_probs=262.9
Q ss_pred EEEEEEecC--CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
+||++.|++ +..|....+|+++|+++||..+ +|++|+++++|++++|..+.+.+.+|+.+++|.+|+|+.+|..+.
T Consensus 1 ~iG~~~p~sG~a~~G~~~~~g~~lA~~~iNa~ggi~G~~ielv~~D~~~~p~~a~~~a~~li~~~~v~aiiG~~~s~~~~ 80 (332)
T cd06344 1 TIAVVVPIGKNPNLAEEILRGVAQAQTEINLQGGINGKLLKVVIANDGNDPEIAKKVADELVKDPEILGVVGHYSSDATL 80 (332)
T ss_pred CeEEEEecCCChhhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCCCChHHHHHHHHHHhcccCceEEEcCCCcHHHH
Confidence 489999999 5678889999999999999887 689999999999999999999999999888999999999999999
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC-CeEEEEEEEcCC-CCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN-WRRVAAIYEDNV-YGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~-w~~v~ii~~~~~-~g~~~~~~~~l 189 (550)
+++++++..++|+|+++++ ++.+. ..+||+||+.|++..+.+++++++.+++ |+++++|++++. || +...+.+
T Consensus 81 a~~~~~~~~~ip~i~~~a~--~~~lt-~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g--~~~~~~~ 155 (332)
T cd06344 81 AALDIYQKAKLVLISPTST--SVKLS-NPGPYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNSTSPYS--QSLKQEF 155 (332)
T ss_pred HHHHHHhhcCceEEccCcC--chhhc-CCCCcEEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeCCCchHh--HHHHHHH
Confidence 9999999999999998876 55554 4679999999999999999999998875 999999999876 99 9999999
Q ss_pred HHHHhc-CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 190 AEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 190 ~~~l~~-~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
.+.+++ .| .++.....+.. .+.++..++.++++.++++|++ .+.......+++++++.+.. ..++.+.
T Consensus 156 ~~~~~~~~g-~~v~~~~~~~~------~~~~~~~~v~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~~~~---~~i~~~~ 224 (332)
T cd06344 156 TSALLERGG-GIVVTPCDLSS------PDFNANTAVSQAINNGATVLVL-FPDTDTLDKALEVAKANKGR---LTLLGGD 224 (332)
T ss_pred HHHHHHhcC-CeeeeeccCCC------CCCCHHHHHHHHHhcCCCEEEE-eCChhHHHHHHHHHHhcCCC---ceEEecc
Confidence 999999 58 88775544432 2357888999999999999999 88888888999999987752 2344444
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
.+... .+.. ......+|.+...++.+. ++..++|.+.|+++|. ..++.+++.+||+++++++|++++++
T Consensus 225 ~~~~~-~~~~-~~~~~~~G~~~~~~~~~~-~~~~~~f~~~~~~~~~--------~~~~~~a~~~Yda~~~l~~A~~~ag~ 293 (332)
T cd06344 225 SLYTP-DTLL-DGGKDLEGLVLAVPWHPL-ASPNSPFAKLAQQLWG--------GDVSWRTATAYDATKALIAALSQGPT 293 (332)
T ss_pred cccCH-HHHH-hchhhhcCeEEEEecccc-cccchHHHHHHHHHhc--------CCchHHHHhHHHHHHHHHHHHHhCCC
Confidence 43221 1110 112456788777776554 4678899999988874 35678899999999999999999887
Q ss_pred CCCCHHHHH-HHHHhCcccccceeEEEeCCCCCCC
Q 008863 349 NISSPEMLL-RQMLSSDFSGLSGKIRFKDGELLNA 382 (550)
Q Consensus 349 ~~~~~~~l~-~~l~~~~~~G~tG~i~f~~~g~~~~ 382 (550)
. ++..+. ..++...|.|..|+++|+++|++..
T Consensus 294 ~--~~~~~~~~~~~~~~~~g~~g~i~f~~~g~~~~ 326 (332)
T cd06344 294 R--EGVQQVELSLRNFSVQGATGKIKFLPSGDRNG 326 (332)
T ss_pred h--hhhhhhhhhcccccccCCCceeEeCCCCcccC
Confidence 5 677776 6788888999999999999998864
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=279.38 Aligned_cols=337 Identities=22% Similarity=0.287 Sum_probs=276.2
Q ss_pred CcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++|+||++.|++ +..|.....|+++|+++||..+ .|.+|++++.|+.+||..+.+.+.+|+.+++|.+|+|+.+|
T Consensus 9 ~~IkIGv~~plsG~~A~~G~~~~~ga~lAv~~iNa~Ggi~G~~velv~~D~~~dp~~a~~~A~~li~~~~V~~vvG~~~S 88 (366)
T COG0683 9 DTIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGGILGRKVELVVEDDASDPATAAAVARKLITQDGVDAVVGPTTS 88 (366)
T ss_pred CceEEEEEecCCchhhhhChHHHHHHHHHHHHHhhhCCcCCceEEEEEecCCCChHHHHHHHHHHHhhcCceEEEEeccC
Confidence 479999999998 6789999999999999999998 47779999999999999999999999998999999999999
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcCCCCCcchh
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~~~g~~~~~ 185 (550)
..+.++.+++++.++|+|+++++ ++... ....+++||+.|++..++.++++++.. .+.+++++|++++.|| +.+
T Consensus 89 ~~~~a~~~v~~~~~i~~i~p~st--~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~~~~~yg--~~~ 164 (366)
T COG0683 89 GVALAASPVAEEAGVPLISPSAT--APQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYG--EGL 164 (366)
T ss_pred cccccchhhHhhcCceEEeecCC--CCcccccccccceEEecCChHHHHHHHHHHHHHhcCCcEEEEEeCCCCcc--hhH
Confidence 99999999999999999999998 67644 344456999999999999999999965 5556999999999999 999
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.+.+++.+++.| +++.....+.+.. .++..++.+++..++++|++ .+...+...+++++++.|+.... .++
T Consensus 165 ~~~~~~~l~~~G-~~~~~~~~~~~~~------~~~~~~v~~i~~~~~d~v~~-~~~~~~~~~~~r~~~~~G~~~~~-~~~ 235 (366)
T COG0683 165 ADAFKAALKALG-GEVVVEEVYAPGD------TDFSALVAKIKAAGPDAVLV-GGYGPDAALFLRQAREQGLKAKL-IGG 235 (366)
T ss_pred HHHHHHHHHhCC-CeEEEEEeeCCCC------CChHHHHHHHHhcCCCEEEE-CCCCccchHHHHHHHHcCCCCcc-ccc
Confidence 999999999999 8765555565543 45999999999999999999 99999999999999999998752 222
Q ss_pred EeccchhhcccCChhHHhhcCc-e-EEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHH
Q 008863 266 VTNTVANALDSLNTTVISSMEG-T-LGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI 343 (550)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al 343 (550)
............ .....+ . +......+...|..+.|.++|++++.. ...++.++..+||+++++++|+
T Consensus 236 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~g~------~~~~~~~~~~~y~a~~~~~~ai 305 (366)
T COG0683 236 DGAGTAEFEEIA----GAGGAGAGLLATAYSTPDDSPANKKFVEAYKAKYGD------PAAPSYFAAAAYDAVKLLAKAI 305 (366)
T ss_pred cccCchhhhhhc----ccCccccEEEEecccccccCcchHHHHHHHHHHhCC------CCCcccchHHHHHHHHHHHHHH
Confidence 211111111111 111222 2 222222334456777899999998851 2355668899999999999999
Q ss_pred HhhccCCCCHHHHHHHHHhCc-ccccceeEEEeCCCCCCCCceEEEEeeCC
Q 008863 344 GRLNYNISSPEMLLRQMLSSD-FSGLSGKIRFKDGELLNADTLRIVNVVGK 393 (550)
Q Consensus 344 ~~~~~~~~~~~~l~~~l~~~~-~~G~tG~i~f~~~g~~~~~~~~i~~~~~~ 393 (550)
+++.. ..+++.+.++|+... +.+.+|.+.|+++|++....+.|.+++..
T Consensus 306 ~~a~~-~~d~~~v~~al~~~~~~~~~~G~v~~~~~~~~~~~~~~i~~~~~~ 355 (366)
T COG0683 306 EKAGK-SSDREAVAEALKGGKFFDTAGGPVTFDEKGDRGSKPVYVGQVQKG 355 (366)
T ss_pred HHHhc-CCCHHHHHHHHhhCCCCccCCcceeECCCCCcCCCceEEEEEEec
Confidence 99983 237889999999887 68999999999999998899999998843
|
|
| >cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=278.11 Aligned_cols=319 Identities=18% Similarity=0.237 Sum_probs=265.6
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||+++|++ +..|.....|+++|++++|+.+ .|++|+++++|+++||..+.+++++|+.+++|.+|+|+.+|..+
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gGi~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~ 80 (333)
T cd06331 1 KIGLLFSLSGPAAISEPSLRNAALLAIEEINAAGGILGRPLELVVEDPASDPAFAAKAARRLIRDDKVDAVFGCYTSASR 80 (333)
T ss_pred CeEEEecCCCccccccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHhccCCcEEEecccHHHH
Confidence 599999999 4578899999999999999997 58999999999999999999999999987799999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.++.++++..++|+|++... .. ....|++||+.|+...+..++++++...+|+++++|+.++.|| ......++
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~--~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g--~~~~~~~~ 153 (333)
T cd06331 81 KAVLPVVERGRGLLFYPTQY--EG---GECSPNVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGSDYVWP--RESNRIAR 153 (333)
T ss_pred HHHHHHHHhcCceEEeCCCC--CC---CcCCCCeEEccCChHHhHHHHHHHHHHhcCCeEEEECCCchhH--HHHHHHHH
Confidence 99999999999999997654 22 1235899999999999999999998766699999999999999 99999999
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
+.+++.| .+++....++.. ..|+.+++.++++.++++|++ .+.......+++++++.|+...... +.+..+
T Consensus 154 ~~~~~~G-~~vv~~~~~~~~------~~d~~~~v~~~~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~ 224 (333)
T cd06331 154 ALLEELG-GEVVGEEYLPLG------TSDFGSVIEKIKAAGPDVVLS-TLVGDSNVAFYRQFAAAGLDADRIP-ILSLTL 224 (333)
T ss_pred HHHHHcC-CEEEEEEEecCC------cccHHHHHHHHHHcCCCEEEE-ecCCCChHHHHHHHHHcCCCcCCCe-eEEccc
Confidence 9999999 999888777764 379999999999999999999 8898999999999999999743333 333322
Q ss_pred h-hhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 271 A-NALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 271 ~-~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
. ..+.... ....+|++...++.+. ..+..++|.++|++++... ..++.+++.+||+++++++|+++++.
T Consensus 225 ~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yda~~~~~~A~~~ag~ 295 (333)
T cd06331 225 DENELAAIG---AEAAEGHYSAASYFQSLDTPENKAFVARYRARYGDD------AVINSPAEAAYEAVYLWAAAVEKAGS 295 (333)
T ss_pred chhhhhccC---hhhhCCcEeechhhhhcCChhHHHHHHHHHHHcCCC------cCCCchhHHHHHHHHHHHHHHHHcCC
Confidence 2 1111111 1345677766555332 3467888888888776321 14677889999999999999999987
Q ss_pred CCCCHHHHHHHHHhCcccccceeEEEeCCCCCC
Q 008863 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLN 381 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~ 381 (550)
. +++.|+++|++++|+|++|.+.|++.+++.
T Consensus 296 ~--~~~~l~~al~~~~~~~~~G~i~f~~~~~~~ 326 (333)
T cd06331 296 T--DPEAVRAALEGVSFDAPQGPVRIDPDNHHT 326 (333)
T ss_pred C--CHHHHHHHhhcCcccCCCCceEecCCCCcc
Confidence 6 899999999999999999999999887775
|
This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t |
| >cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=277.73 Aligned_cols=314 Identities=17% Similarity=0.236 Sum_probs=262.8
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||++.|++ +..|.....|+++|++++|+.+ .|++|+++++|++++|..+.+.+++|+.+ +|.+|+||.++..+
T Consensus 1 ~IG~l~p~sG~~a~~G~~~~~g~~~a~~~iN~~GGi~G~~i~l~~~D~~~~p~~a~~~a~~lv~~-~v~aiiG~~~s~~~ 79 (342)
T cd06329 1 KIGVIDPLSGPFASLGELVRRGLQLAADEINAKGGVDGRPIELVEEDNKGSPQEALRKAQKAIDD-GVRLVVQGNSSSVA 79 (342)
T ss_pred CeeeeccCCCCcccccHHHHHHHHHHHHHHHhcCCcCCeEEEEEeccCCCChHHHHHHHHHHHHh-CCeEEEcccchHHH
Confidence 599999998 4578899999999999999987 58999999999999999999999999986 99999999999998
Q ss_pred HHH-------HHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcC-CeEEEEEEEcCCCCC
Q 008863 111 AVV-------AEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYN-WRRVAAIYEDNVYGG 181 (550)
Q Consensus 111 ~~v-------~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~-w~~v~ii~~~~~~g~ 181 (550)
.++ ++++...++|+|+++++ ++.+. ...+||+||+.|++..++.++++++...+ |+++++++.++.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~k~v~i~~~~~~~g- 156 (342)
T cd06329 80 LALTEAVRKHNQRNPGKEVLYLNYASV--APALTGEKCSFWHFRTDANTDMKMEALASYIKKQPDGKKVYLINQDYSWG- 156 (342)
T ss_pred HHhhhhhhhhhhhhccCCeEEEecCCC--CchhhhccCcceEEEecCChHHHHHHHHHHHHhcccCceEEEEeCChHHH-
Confidence 888 78888999999999877 55543 34578999999999999999999998775 99999999999999
Q ss_pred cchhHHHHHHHHhc--CCCeEEEEEeecCCCCCCCCCh-HHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 182 DSGKLALLAEALQN--VSSSEIQSRLVLPPISSISDPK-EAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 182 ~~~~~~~l~~~l~~--~g~~~v~~~~~~~~~~~~~~~~-~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
....+.+++.+++ .| ++|+....++. .. +|+..++.++++.++++|++ .........+++++++.|+.
T Consensus 157 -~~~~~~~~~~~~~~~~G-~~vv~~~~~~~------~~~~d~~~~i~~l~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~ 227 (342)
T cd06329 157 -QDVAAAFKAMLAAKRPD-IQIVGEDLHPL------GKVKDFSPYVAKIKASGADTVIT-GNWGNDLLLLVKQAADAGLK 227 (342)
T ss_pred -HHHHHHHHHHHHhhcCC-cEEeceeccCC------CCCCchHHHHHHHHHcCCCEEEE-cccCchHHHHHHHHHHcCCC
Confidence 9999999999999 99 99987766654 34 68999999999999999999 88788899999999999996
Q ss_pred CCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHH
Q 008863 259 GKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIK 337 (550)
Q Consensus 259 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~ 337 (550)
. .++........ ......+..+|.+....+.. ..++..++|.++|+++|. ..++.++..+||+++
T Consensus 228 ~---~~~~~~~~~~~---~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~~~y~~~~ 293 (342)
T cd06329 228 L---PFYTPYLDQPG---NPAALGEAGLGLVVAVAYWHPNDTPANRAFVEAFKAKYG--------RVPDYYEGQAYNGIQ 293 (342)
T ss_pred c---eEEeccccchh---HHHhhcccccceEEeeeccCCCCCHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHH
Confidence 4 34443332211 11112244567776655433 235778889888888773 356677889999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCC
Q 008863 338 IITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGE 378 (550)
Q Consensus 338 ~~a~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g 378 (550)
++++|+++++.. +++.+.++|++++|+|.+|+++|+..+
T Consensus 294 ~~~~a~~~ag~~--~~~~v~~al~~~~~~~~~g~~~~~~~~ 332 (342)
T cd06329 294 MLADAIEKAGST--DPEAVAKALEGMEVDTPVGPVTMRASD 332 (342)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHhCCccccCCCCeEEcccC
Confidence 999999998876 899999999999999999999998533
|
Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids. |
| >TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=275.58 Aligned_cols=336 Identities=14% Similarity=0.167 Sum_probs=267.7
Q ss_pred EEEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 35 TKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 35 i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
|+||++.|++ +..|.....|+++|++++|+++ .|++|+++++|++++|..+.+.+.+|+.+++|.+|+|+.+|..
T Consensus 1 I~IG~l~plsG~~a~~g~~~~~g~~lav~~iN~~GGi~G~~i~l~~~Dd~~~p~~a~~~a~~Lv~~~~V~~iiG~~~S~~ 80 (359)
T TIGR03407 1 IKVGILHSLSGTMAISETTLKDAELMAIEEINASGGVLGKKIEPVVEDGASDWPTFAEKARKLITQDKVAAVFGCWTSAS 80 (359)
T ss_pred CeEEEEeCCCCchhhcchhHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEcCCcHHH
Confidence 6899999999 4667888999999999999998 5899999999999999999999999998889999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcCCCCCcchhHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
+.++.+++...++|++.+... . .....|++||+.+++..+..++++++.. .+.+++++++.+++|| ....+.
T Consensus 81 ~~a~~~~~~~~~~~~i~~~~~--~---~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~g~k~v~~l~~d~~~g--~~~~~~ 153 (359)
T TIGR03407 81 RKAVLPVFEENNGLLFYPVQY--E---GEECSPNIFYTGAAPNQQIIPAVDYLLSKKGAKRFFLLGSDYVFP--RTANKI 153 (359)
T ss_pred HHHHHHHHhccCCceEeCCcc--c---CcccCCCEEEcCCChHHHHHHHHHHHHhccCCceEEEecCccHHH--HHHHHH
Confidence 999999999999999976533 1 1235689999999999999999999876 5999999999999999 888899
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| ++++....++.. ..|+..++.+|++.++|+|++ .........+++++++.|+......++.+.
T Consensus 154 ~~~~~~~~G-~~vv~~~~~~~~------~~D~s~~v~~l~~~~pDav~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 225 (359)
T TIGR03407 154 IKAYLKSLG-GTVVGEDYTPLG------HTDFQTIINKIKAFKPDVVFN-TLNGDSNVAFFKQLKNAGITAKDVPVVSFS 225 (359)
T ss_pred HHHHHHHcC-CEEEeeEEecCC------hHhHHHHHHHHHHhCCCEEEE-eccCCCHHHHHHHHHHcCCCccCCcEEEee
Confidence 999999999 999888777763 489999999999999999998 777777889999999999976433334433
Q ss_pred cchhhcccCChhHHhhcCceEEEEee-cCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSY-YSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
.......... .+..+|++....+ .....+..++|.++|++.|... ..+...++.+||++.++++|+++++
T Consensus 226 ~~~~~~~~~g---~~~~~G~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~y~a~~~~~~A~~~ag 296 (359)
T TIGR03407 226 VAEEEIRGIG---PENLVGHLAAWNYFQSVDTPANKKFVKAFKAKYGDD------RVTNDPMEAAYLGVYLWKAAVEKAG 296 (359)
T ss_pred cCHHHHhhcC---hHhhCCeEEeccchhcCCCHHHHHHHHHHHHHcCCC------CCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 2221111111 1345676543222 2234477888888888877421 1233446678999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeee
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYK 396 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~ 396 (550)
.. ++..++++|++++|.++.|+++|+++++.....+.+.+++ +++|.
T Consensus 297 ~~--~~~~i~~al~~~~~~~~~G~i~f~~~~~~~~~~~~~~~~~~~g~~~ 344 (359)
T TIGR03407 297 SF--DVDAVRDAAIGIEFDAPEGKVKVDGKNHHLTKTVRIGEIRADGQFD 344 (359)
T ss_pred CC--CHHHHHHHhcCCcccCCCccEEEeCCCCeeeeeeEEEEEccCCCEE
Confidence 76 9999999999999999999999997444433455555664 44443
|
Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane. |
| >PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=278.90 Aligned_cols=334 Identities=23% Similarity=0.363 Sum_probs=277.8
Q ss_pred cEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 34 VTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 34 ~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+|+||+++|+++ ..|.....|+++|++++|+++ +|++|+++++|+.+++..+.+.+.+++.+++|.+|+|+.++.
T Consensus 1 ~i~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vvg~~~s~ 80 (343)
T PF13458_consen 1 PIKIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGGINGRKIELVVYDDGGDPAQAVQAARKLIDDDGVDAVVGPLSSA 80 (343)
T ss_dssp SEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TT-HHHHHHHHHHHHHTSTESEEEESSSHH
T ss_pred CEEEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCCcCCccceeeeccCCCChHHHHHHHHHhhhhcCcEEEEecCCcH
Confidence 599999999993 567789999999999999997 699999999999999999999999999888999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH-HcCCeEEEEEEEcCCCCCcchhHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~-~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.+.++++++...++|+|++++. + ....++|+|++.|++..++.++++++. +++.+++++|+.++++| ....+
T Consensus 81 ~~~~~~~~~~~~~ip~i~~~~~--~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~g--~~~~~ 153 (343)
T PF13458_consen 81 QAEAVAPIAEEAGIPYISPSAS--S---PSPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPYG--RSLAE 153 (343)
T ss_dssp HHHHHHHHHHHHT-EEEESSGG--G---GTTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEESSHHH--HHHHH
T ss_pred HHHHHHHHHHhcCcEEEEeecc--C---CCCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEecCchhh--hHHHH
Confidence 9999999999999999996654 2 235668999999999999999999974 58999999999999999 99999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| ++++....++.. ..|+..+++++++.++++|++ .+.+..+..+++++.+.|+..+.+....+
T Consensus 154 ~~~~~~~~~G-~~vv~~~~~~~~------~~d~~~~~~~l~~~~~d~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (343)
T PF13458_consen 154 AFRKALEAAG-GKVVGEIRYPPG------DTDFSALVQQLKSAGPDVVVL-AGDPADAAAFLRQLRQLGLKPPRIPLFGT 225 (343)
T ss_dssp HHHHHHHHTT-CEEEEEEEE-TT------SSHHHHHHHHHHHTTTSEEEE-ESTHHHHHHHHHHHHHTTGCSCTEEEEEG
T ss_pred HHHHHHhhcC-ceeccceecccc------cccchHHHHHHhhcCCCEEEE-eccchhHHHHHHHHHhhccccccceeecc
Confidence 9999999999 998877777764 379999999999999999998 99999999999999999988754444433
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
..+...+. .......+|.+....+.+. .+|..++|.++|++.|... ..++..+..+||++.++++|++++
T Consensus 226 ~~~~~~l~---~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yda~~~~~~al~~~ 296 (343)
T PF13458_consen 226 SLDDASLQ---QLGGDALEGVYIVSPWFPDPDSPAVKQFQERYRAAYGEE------PPPSLYAAQGYDAARLLAQALERA 296 (343)
T ss_dssp GGSSHHHH---HHHGGGGTTEEEEESGGGTGGSHHHHHHHHHHHHHHSST------GGTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHH---HhhhhhccCceeecccCCCCCCHHHHHHHHHHHHHcCCC------CCCchhHHHHHHHHHHHHHHHHHh
Confidence 33332221 1122457788877776553 3578899999999988531 137889999999999999999999
Q ss_pred ccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CC
Q 008863 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GK 393 (550)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~ 393 (550)
+.. +++.++++|++.+|+|+.|++.|+..++.....+.|++++ +|
T Consensus 297 g~~--~~~~v~~al~~~~~~g~~g~~~~~~~~~~~~~~~~i~~v~~~G 342 (343)
T PF13458_consen 297 GSL--DREAVREALESLKYDGLFGPISFDPPDHQANKPVYIVQVKSDG 342 (343)
T ss_dssp TSH--HHHHHHHHHHTSEEEETTEEEEEETTTSBEEEEEEEEEEETTT
T ss_pred CCC--CHHHHHHHHHhCCCcccccceEEeCCCCccccCeEEEEEecCC
Confidence 754 9999999999999999999999987666667888999998 54
|
... |
| >cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=276.09 Aligned_cols=315 Identities=21% Similarity=0.324 Sum_probs=248.0
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCC---CcEEEEEEecC-CCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRDH-NRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~---~~~l~~~~~d~-~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
+||++++... .....|+++|++++|..++ +..+.+.+.+. .+++..+.+.+|+++..++|.+|+||.++..+.
T Consensus 1 ~iG~i~~~~~---~~~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~l~~~~~v~ai~G~~~s~~~~ 77 (328)
T cd06351 1 NIGAIFDRDA---RKEELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCDLLVSQGVAAIFGPTSSESAS 77 (328)
T ss_pred CeeeecCCCc---HHHHHHHHHHHHHhccCccccCCeeEEEEEEEeCCCChHHHHHHHHHHHhccCcEEEECCCCHHHHH
Confidence 4899998764 6788999999999999872 45565555543 489999999999999557999999999999999
Q ss_pred HHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
+++++|+.++||+|+++++ .+. .++..++++||+.|+...+++++++++.+++|++|++||+++++. ..+ +.+.
T Consensus 78 ~v~~~~~~~~iP~is~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~~~~~~--~~l-~~~~ 152 (328)
T cd06351 78 AVQSICDALEIPHISISGG--SEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYDSDEGL--SRL-QELL 152 (328)
T ss_pred HHHHHhccCCCCeEEeecC--cccccccccccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEeCchHH--HHH-HHHH
Confidence 9999999999999999887 454 334578999999999999999999999999999999999998854 333 3333
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCC-eEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQS-RVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~-~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
+.....+ ..+... .+... .++++..++++++.++ ++|++ ++..+.+..++++|.++||++++|+||+++.
T Consensus 153 ~~~~~~~-~~v~~~-~~~~~------~~~~~~~l~~l~~~~~~~vil~-~~~~~~~~~~l~~a~~~gm~~~~~~~i~~~~ 223 (328)
T cd06351 153 DESGIKG-IQVTVR-RLDLD------DDNYRQLLKELKRSESRRIILD-CSSEEEAKEILEQAVELGMMGYGYHWILTNL 223 (328)
T ss_pred HhhcccC-ceEEEE-EecCC------chhHHHHHHHHhhcccceEEEE-CCcHHHHHHHHHHHHHhccccCCcEEEEecC
Confidence 3333334 344433 34432 2379999999999988 66655 6666999999999999999999999999998
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccC
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN 349 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 349 (550)
.....+. ........|++++....... +...+|..+|.. .++......+...++++||+++++
T Consensus 224 ~~~~~d~--~~~~~~~~~i~g~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~~~~---------- 286 (328)
T cd06351 224 DLSDIDL--EPFQYGPANITGFRLVDPDS-PDVSQFLQRWLE----ESPGVNLRAPIYDAALLYDAVLLL---------- 286 (328)
T ss_pred Cccccch--hhhccCCcceEEEEEeCCCc-hHHHHHHHhhhh----ccCCCCcCccchhhHhhhcEEEEE----------
Confidence 6654332 22334567888888865544 677778887722 222222445667788889887766
Q ss_pred CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEEEEEeC
Q 008863 350 ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLP 403 (550)
Q Consensus 350 ~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~ 403 (550)
||++.|+++|.|.++.++|++++ +.++++||.|++
T Consensus 287 -------------------tg~i~f~~~g~r~~~~l~i~~l~~~~~~~~vg~W~~ 322 (328)
T cd06351 287 -------------------TGTVSFDEDGVRSNFTLDIIELNRSRGWRKVGTWNG 322 (328)
T ss_pred -------------------EeeEEECCCCcccceEEEEEEecCCCCceEEEEecC
Confidence 99999999999999999999999 899999999994
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors |
| >cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=273.06 Aligned_cols=331 Identities=17% Similarity=0.259 Sum_probs=270.3
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|||++.|++ +..|.....|+++|++++|+++ +|++|+++++|+++++..+.+.+.+|+.+++|.+|+|+.+|..+
T Consensus 1 ~IG~~~plsG~~a~~G~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~a~~~a~~li~~~~V~~i~G~~~s~~~ 80 (340)
T cd06349 1 LIGVAGPLTGDNAQYGTQWKRAFDLALDEINAAGGVGGRPLNIVFEDSKSDPRQAVTIAQKFVADPRIVAVLGDFSSGVS 80 (340)
T ss_pred CeeEEecCCCcchhcCccHHHHHHHHHHHHHhhCCcCCeEEEEEEeCCCCChHHHHHHHHHHhccCCeEEEECCCccHhH
Confidence 699999999 5678999999999999999987 68999999999999999999999999998899999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.+++++++..++|+|+++++ .+.+. ...+|+||+.|++..+..++++++ ++++|+++++++.+++|| ....+.+
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~--~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~g--~~~~~~~ 155 (340)
T cd06349 81 MAASPIYQRAGLVQLSPTNS--HPDFT-KGGDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWG--RTSADIF 155 (340)
T ss_pred HHhHHHHHhCCCeEEecCCC--CCccc-cCCCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCChHh--HHHHHHH
Confidence 99999999999999998876 45443 246899999999999999999997 678999999999999999 9999999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| ++++....+++. ..|++.++.++++.++|+|++ .+.......+++++++.|+.. .++.+..
T Consensus 156 ~~~~~~~g-~~v~~~~~~~~~------~~d~~~~v~~l~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~---~~~~~~~ 224 (340)
T cd06349 156 VKAAEKLG-GQVVAHEEYVPG------EKDFRPTITRLRDANPDAIIL-ISYYNDGAPIARQARAVGLDI---PVVASSS 224 (340)
T ss_pred HHHHHHcC-CEEEEEEEeCCC------CCcHHHHHHHHHhcCCCEEEE-ccccchHHHHHHHHHHcCCCC---cEEccCC
Confidence 99999999 999987777653 368999999999999999999 889999999999999999875 3344332
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
+... .... ......+|++....+.+. ..+..++|.++|+++|. ..|+.++..+||++.++++|+++++.
T Consensus 225 ~~~~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~y~~~~~~~~a~~~ag~ 294 (340)
T cd06349 225 VYSP-KFIE-LGGDAVEGVYTPTAFFPGDPRPEVQSFVSAYEAKYG--------AQPDAFAAQAYDAVGILAAAVRRAGT 294 (340)
T ss_pred cCCH-HHHH-HhHHHhCCcEEecccCCCCCCHHHHHHHHHHHHHHC--------CCcchhhhhHHHHHHHHHHHHHHhCC
Confidence 2111 1110 112346777766555443 34778899999988773 34677889999999999999999876
Q ss_pred CCCCHHHHHHH-HHhCcccccceeEEEeCC-CCCCCCceEEEEeeCCee
Q 008863 349 NISSPEMLLRQ-MLSSDFSGLSGKIRFKDG-ELLNADTLRIVNVVGKKY 395 (550)
Q Consensus 349 ~~~~~~~l~~~-l~~~~~~G~tG~i~f~~~-g~~~~~~~~i~~~~~~~~ 395 (550)
. +...+... +.+..+.+.+|+++|+.+ ++.. ..+.++.+++++|
T Consensus 295 ~--~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~~g~~ 340 (340)
T cd06349 295 D--RRAARDGFAKAEDVYSGVTGSTKFDPNTRRVI-KRFVPLVVRNGKF 340 (340)
T ss_pred C--CHHHHHHHHHhccCcccceEeEEECCCCCCcc-CceEEEEEeCCcC
Confidence 4 44444343 245567899999999986 5554 5888888877653
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. |
| >cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=275.17 Aligned_cols=318 Identities=17% Similarity=0.202 Sum_probs=265.3
Q ss_pred EEEEEEecCC----ccchhHHHHHHHHHHHHhcCC-CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDANS----QMGKQAITAMKIAVQNFNSDS-RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~~----~~g~~~~~a~~~Av~~iN~~~-~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||+++|+++ ..|.....|+++|++++| .+ .|++|+++++|++++|..+.+.+.+|+.+++|.+|+|+.++..+
T Consensus 1 ~IG~l~plsG~~~a~~g~~~~~g~~la~~~iN-ggi~G~~v~l~~~D~~~~p~~a~~~~~~l~~~~~V~aviG~~~s~~~ 79 (334)
T cd06327 1 KIGVLTDMSGVYADAEGKGSVEAAELAVEDFG-GGVLGRPIELVVADHQNKADVAAAKAREWIDRDGVDMIVGGPNSAVA 79 (334)
T ss_pred CcccccCCCCcCccccCHHHHHHHHHHHHHhc-CCccCeEEEEEEecCCCCchHHHHHHHHHHhhcCceEEECCccHHHH
Confidence 5899999984 347788999999999999 44 68999999999999999999999999987799999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.++++++++.++|+|+++++ ++... ...+||+||+.|++..++.++++++...+++++++++.++.|| +...+.+
T Consensus 80 ~a~~~~~~~~~vp~i~~~s~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~g--~~~~~~~ 155 (334)
T cd06327 80 LAVQEVAREKKKIYIVTGAG--SDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGGKKWFFLTADYAFG--HSLERDA 155 (334)
T ss_pred HHHHHHHHHhCceEEecCCC--ccccccCCCCCceEEccCChHHHHHHHHHHHHHhcCCeEEEEecchHHh--HHHHHHH
Confidence 99999999999999999877 55543 3457999999999999999999998877799999999999999 9999999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| ++++....++.. .+|+..++.++++.++|+|++ .+.......+++++++.|+.... .++....
T Consensus 156 ~~~~~~~G-~~vv~~~~~~~~------~~d~~~~v~~l~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~ 226 (334)
T cd06327 156 RKVVKANG-GKVVGSVRHPLG------TSDFSSYLLQAQASGADVLVL-ANAGADTVNAIKQAAEFGLTKGQ-KLAGLLL 226 (334)
T ss_pred HHHHHhcC-CEEcCcccCCCC------CccHHHHHHHHHhCCCCEEEE-eccchhHHHHHHHHHHhCCccCC-cEEEecc
Confidence 99999999 999887777653 379999999999999999999 88999999999999999997432 2333322
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
+....... ..+..+|++...++... ..+..++|.++|+++|. ..|+.+++.+||+++++++|+++++.
T Consensus 227 ~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~~~~Y~~~~~~~~A~~~ag~ 295 (334)
T cd06327 227 FLTDVHSL---GLDAAQGLYLTTAWYWDLPNDETRAFVKRFQAKYG--------KMPSMVQAGAYSAVLHYLKAVEAAGT 295 (334)
T ss_pred cHHHHHhh---chhhhcCeEEeeeccccCCCHHHHHHHHHHHHHHC--------cCCCcHHHHHHHHHHHHHHHHHHHCC
Confidence 22111111 12356787776665433 25788899999988873 34677888999999999999999988
Q ss_pred CCCCHHHHHHHHHhCc-ccccceeEEEeC-CCCC
Q 008863 349 NISSPEMLLRQMLSSD-FSGLSGKIRFKD-GELL 380 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~-~~G~tG~i~f~~-~g~~ 380 (550)
. ++..+.++|++++ +++..|+++|++ +++.
T Consensus 296 ~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~ 327 (334)
T cd06327 296 D--DADKVVAKMKETPIYDLFAGNGYIRACDHQM 327 (334)
T ss_pred C--ChHHHHHhccccceeccCCCCceeeccccch
Confidence 7 8888999999975 578899999987 5544
|
Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids. |
| >cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=273.83 Aligned_cols=320 Identities=20% Similarity=0.231 Sum_probs=260.2
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||+++|++ +..|.....|+++|++++|+++ +|++|++++.|+++++..+.+.+++|+.+++|.+|+||.++..+
T Consensus 1 ~iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~v~~~~~D~~~~~~~a~~~a~~li~~~~v~aiig~~~s~~~ 80 (346)
T cd06330 1 KIGVITFLSGRAAIFGEPARNGAELAVEEINAAGGIGGRKIELVVRDEAGKPDEAIREARELVENEGVDMLIGLISSGVA 80 (346)
T ss_pred CeeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCCcCCeEEEEEEecCCCCHHHHHHHHHHHHhccCCcEEEcccchHHH
Confidence 699999999 3567889999999999999998 68999999999999999999999999987799999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.+++++++..++|+|++.+. ++.. ....++++||+.|++..+..+++++++++ +|+++++|+.++.+| ....+
T Consensus 81 ~~~~~~~~~~~ip~i~~~s~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~g--~~~~~ 156 (346)
T cd06330 81 LAVAPVAEELKVFFIATDPG--TPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPDYAYG--QDAWA 156 (346)
T ss_pred HHHHHHHHHcCCeEEEcCCC--CcccccCCCCCceEEecCChHHHHHHHHHHHHHhCcCccEEEEECCchHHH--HHHHH
Confidence 99999999999999998876 5543 34568999999999999999999999876 499999999999999 88999
Q ss_pred HHHHHHhcCC-CeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 188 LLAEALQNVS-SSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 188 ~l~~~l~~~g-~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
.+++.+++.| +++++....++. ..+|+..++.+|++.++++|++ .+...+...+++++++.|+.+ +..|+.
T Consensus 157 ~~~~~~~~~g~~~~~v~~~~~~~------~~~d~~~~v~~i~~~~~d~ii~-~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 228 (346)
T cd06330 157 DFKAALKRLRPDVEVVSEQWPKL------GAPDYGSEITALLAAKPDAIFS-SLWGGDLVTFVRQANARGLFD-GTTVVL 228 (346)
T ss_pred HHHHHHHHhCCCCeecccccCCC------CCcccHHHHHHHHhcCCCEEEE-ecccccHHHHHHHHHhcCccc-CceEEe
Confidence 9999999884 044544333332 3478999999999999999999 888889999999999999965 456776
Q ss_pred eccchhhcccCChhHHhhcCceEEEEee--cCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHH
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSY--YSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI 343 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al 343 (550)
+......+. .......+|.+....+ ... .++..++|.++|+++|. ..|+.++..+||+++++++|+
T Consensus 229 ~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~~~~y~a~~~l~~a~ 297 (346)
T cd06330 229 TLTGAPELA---PLGDEMPEGVIIGGRGPYFIPPDTPENKAFVDAYQEKYG--------DYPTYGAYGAYQAVMALAAAV 297 (346)
T ss_pred eccchhhhh---hhhcccCCceEEeccccCCCCCCChHHHHHHHHHHHHHC--------CCCChHHHHHHHHHHHHHHHH
Confidence 555332211 1112345565543321 111 35778899999988873 356677889999999999999
Q ss_pred HhhccCCCCH----HHHHHHHHhCcccccceeEEEeCCCCC
Q 008863 344 GRLNYNISSP----EMLLRQMLSSDFSGLSGKIRFKDGELL 380 (550)
Q Consensus 344 ~~~~~~~~~~----~~l~~~l~~~~~~G~tG~i~f~~~g~~ 380 (550)
++++.. ++ +.+.++|+++++.|++|++.|+.+.++
T Consensus 298 ~~a~~~--~~~~~~~~v~~al~~~~~~~~~G~~~f~~~~~~ 336 (346)
T cd06330 298 EKAGAT--DGGAPPEQIAAALEGLSFETPGGPITMRAADHQ 336 (346)
T ss_pred HHhcCC--CCCCcHHHHHHHHcCCCccCCCCceeeecCCCc
Confidence 999865 32 469999999999999999999975444
|
Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. |
| >cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=268.09 Aligned_cols=339 Identities=16% Similarity=0.209 Sum_probs=272.3
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|||+++|++ +..|.....|+++|++++|+++ .|++|+++++|++++|..+...+.+|+++++|.+|+|+.++..+
T Consensus 1 kIG~~~plSG~~a~~g~~~~~g~~la~~~iN~~GGi~G~~ielv~~D~~~~p~~a~~~a~~li~~~~V~aiiG~~~s~~~ 80 (360)
T cd06357 1 RVGVLFSRTGVTAAIERSQRNGALLAIEEINAAGGVLGRELEPVEYDPGGDPDAYRALAERLLREDGVRVIFGCYTSSSR 80 (360)
T ss_pred CeEEEEcCCCCchhccHHHHHHHHHHHHHHhhcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEeCccHHHH
Confidence 699999999 5688999999999999999998 58999999999999999999999999988899999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.++.++++..++|++.+++. .. . ...+++|++.++...+..++++++...+-+++++|+.|++|| ....+.+.
T Consensus 81 ~a~~~~~~~~~~~~~~~~~~--~~-~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~g--~~~~~~~~ 153 (360)
T cd06357 81 KAVLPVVERHDALLWYPTLY--EG-F--EYSPNVIYTGAAPNQNSVPLADYLLRHYGKRVFLVGSNYIYP--YESNRIMR 153 (360)
T ss_pred HHHHHHHHhcCceEEeCCCc--cC-C--cccCCEEEeCCCcHHHHHHHHHHHHhcCCcEEEEECCCCcch--HHHHHHHH
Confidence 99999999999999987654 22 1 123678888888777788899998765568999999999999 99999999
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc-
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT- 269 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~- 269 (550)
+.+++.| ++++....++... ...|+..++.++++.++|+|++ .+....+..++++++++|+.+.. ..+.+..
T Consensus 154 ~~~~~~G-~~vv~~~~~~~~~----~~~d~s~~v~~l~~~~pd~V~~-~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~ 226 (360)
T cd06357 154 DLLEQRG-GEVLGERYLPLGA----SDEDFARIVEEIREAQPDFIFS-TLVGQSSYAFYRAYAAAGFDPAR-MPIASLTT 226 (360)
T ss_pred HHHHHcC-CEEEEEEEecCCC----chhhHHHHHHHHHHcCCCEEEE-eCCCCChHHHHHHHHHcCCCccC-ceeEEeec
Confidence 9999999 9988765555431 3589999999999999999999 88999999999999999997643 2222322
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
....... ...+..+|++....+... ..|..+.|.++|+++|... ..++.+++.+||+++++++|+++++.
T Consensus 227 ~~~~~~~---~~g~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~g~~------~~~~~~~~~~yda~~~l~~Al~~ag~ 297 (360)
T cd06357 227 SEAEVAA---MGAEAAAGHITAAPYFSSIDTPANRAFVARYRARFGED------APVSACAEAAYFQVHLFARALQRAGS 297 (360)
T ss_pred cHHHHhh---cchHhhCCcEEecccccccCChhHHHHHHHHHHHcCCC------CCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 1111110 112456787776655332 3477889999998887421 13566788999999999999999987
Q ss_pred CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEe-eCCeeeEEE
Q 008863 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV-VGKKYKELD 399 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~-~~~~~~~vG 399 (550)
. +++.++++|++.+|.|..|.+.|+..++.......+.++ ++++|..+.
T Consensus 298 ~--~~~~v~~aL~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~G~~~~~~ 347 (360)
T cd06357 298 D--DPEDVLAALLGFSFDAPQGPVRIDPDNNHTYLWPRIARVNADGQFDIVR 347 (360)
T ss_pred C--CHHHHHHHhccCcccCCCcceEEeCCCCeeeeeeEEEEEcCCCCEEEEE
Confidence 6 899999999999999999999999765543345556677 566666554
|
This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced. |
| >cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=273.02 Aligned_cols=321 Identities=18% Similarity=0.180 Sum_probs=265.4
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--C--C--cEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--R--N--HKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~--~--~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
+||++.|++ +..|.....++++|++++|+.+ . | ++|+++++|++++|..+.+.+.+|+.+++|.+|+|+.+
T Consensus 1 ~IG~l~plsG~~a~~g~~~~~g~~lA~~~iN~~GGi~~~G~~~~iel~~~D~~~~p~~a~~~~~~li~~~~v~~iiG~~~ 80 (347)
T cd06336 1 KIGFSGPLSGPAAAWGLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAAANARRLVQQDGVKFILGPIG 80 (347)
T ss_pred CcceeccCcCcccccChhhHHHHHHHHHHHHhcCCcccCCceeeEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEeCCC
Confidence 699999999 4578889999999999999886 2 4 48999999999999999999999998779999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
+..+.. ++++++.++|+|++.+. ++..+...++|+||+.|++..+..++++++.+.+|+++++|+.|+.|| +...
T Consensus 81 s~~~~~-~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g--~~~~ 155 (347)
T cd06336 81 GGITAA-QQITERNKVLLLTAYSS--DLSIDTAGNPLTFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPNDAYG--QPWV 155 (347)
T ss_pred Cchhhh-hhhhhhcCceEEeccCC--cccccccCCceEEEecCCchhHHHHHHHHHhhcCCceEEEEccCCchh--HHHH
Confidence 988888 99999999999999987 666655567999999999999999999999889999999999999999 9999
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH-HHHHHHHHHHHcCCCCCCEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD-MTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~-~~~~il~~a~~~g~~~~~~~~i 265 (550)
+.+++.+++.| ++++....++.. ..|+..++.++++.++++|++ .+... ....++++++++|+... ..++
T Consensus 156 ~~~~~~l~~~G-~~vv~~~~~~~~------~~D~s~~i~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~~g~~~~-~~~~ 226 (347)
T cd06336 156 AAYKAAWEAAG-GKVVSEEPYDPG------TTDFSPIVTKLLAEKPDVIFL-GGPSPAPAALVIKQARELGFKGG-FLSC 226 (347)
T ss_pred HHHHHHHHHcC-CEEeeecccCCC------CcchHHHHHHHHhcCCCEEEE-cCCCchHHHHHHHHHHHcCCCcc-EEec
Confidence 99999999999 999887777763 379999999999999999999 88888 99999999999999763 2222
Q ss_pred EeccchhhcccCChhHHhhcCceEEEEeecCC---CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHH
Q 008863 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSD---DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEA 342 (550)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~A 342 (550)
.......... ....+..+|++...++... .+|..++|.++|+++|. ..++.++..+||+++++++|
T Consensus 227 ~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~y~~~~~~~~A 295 (347)
T cd06336 227 TGDKYDELLV---ATGADFMEGVYFQFPDVDDPALAFPRAKAFVEEYKKRYG--------EPPNSEAAVSYDAVYILKAA 295 (347)
T ss_pred cCCCchHHHH---HhcHHhhCceEEEeecccccccCCHHHHHHHHHHHHHHC--------CCCcHHHHHHHHHHHHHHHH
Confidence 2221111111 1112456788777665443 45778899999988873 34677889999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHh--------CcccccceeEEEeCCCCCCCC
Q 008863 343 IGRLNYNISSPEMLLRQMLS--------SDFSGLSGKIRFKDGELLNAD 383 (550)
Q Consensus 343 l~~~~~~~~~~~~l~~~l~~--------~~~~G~tG~i~f~~~g~~~~~ 383 (550)
+++++.. ++..+.+.+.. ..|.+..|.+.||++|+...+
T Consensus 296 l~~ag~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 342 (347)
T cd06336 296 MEAAGSV--DDTAAVAALAAMLGVGKPAFGYARWWGKELFGVNGALVGP 342 (347)
T ss_pred HHhcCCC--CcHHHHHHHhhccCCCcCccccccccccccccCCCccccC
Confidence 9999876 56566665543 467788999999999998643
|
This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=267.95 Aligned_cols=326 Identities=18% Similarity=0.264 Sum_probs=261.3
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+||+++|++ +..|.....|+++|++++|...+|++|+++++|++++|..+.+.+.+|+.+++|.+|+|+.++..+.+
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~lAv~~inggi~G~~i~l~~~D~~~~p~~a~~~~~~lv~~~~v~~viG~~~s~~~~a 80 (333)
T cd06359 1 KIGFITTLSGPAAALGQDMRDGFQLALKQLGGKLGGLPVEVVVEDDGLKPDVAKQAAERLIKRDKVDFVTGVVFSNVLLA 80 (333)
T ss_pred CeEEEEecccchhhhhHHHHHHHHHHHHHhCCccCCEEEEEEecCCCCChHHHHHHHHHHHhhcCCcEEEccCCcHHHHH
Confidence 699999999 45677889999999999984337899999999999999999999999998779999999999999999
Q ss_pred HHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
+++++...++|+|++++. .+... ...+||+||+.|++..+..++++++...+|+++++++++++|| +...+.+++
T Consensus 81 ~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~vail~~~~~~g--~~~~~~~~~ 156 (333)
T cd06359 81 VVPPVLESGTFYISTNAG--PSQLAGKQCSPYFFSTSWQNDQVHEAMGKYAQDKGYKRVFLIAPNYQAG--KDALAGFKR 156 (333)
T ss_pred HHHHHHHcCCeEEecCCC--ccccccccCCCcEEEeeCChHhhHHHHHHHHHHhCCCeEEEEecCchhh--HHHHHHHHH
Confidence 999999999999998765 34433 3457999999999999999999999989999999999999999 888888877
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccch
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (550)
.+. .++.....++. ..+|+..++.++++.++|+|++ ......+..++++++++|+... ..++.+....
T Consensus 157 ~~~----~~v~~~~~~~~------~~~d~~~~i~~l~~~~pd~v~~-~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~ 224 (333)
T cd06359 157 TFK----GEVVGEVYTKL------GQLDFSAELAQIRAAKPDAVFV-FLPGGMGVNFVKQYRQAGLKKD-IPLYSPGFSD 224 (333)
T ss_pred HhC----ceeeeeecCCC------CCcchHHHHHHHHhCCCCEEEE-EccCccHHHHHHHHHHcCcccC-CeeeccCccc
Confidence 764 24554444443 3479999999999999999999 7788889999999999998643 2444433322
Q ss_pred hhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccCC
Q 008863 272 NALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNI 350 (550)
Q Consensus 272 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 350 (550)
.. ... ....+..+|++....+.+. .++..++|.++|+++| +..++.++..+||+++++++|+++++...
T Consensus 225 ~~-~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~~~~~~~~~yda~~~~~~A~~~ag~~~ 294 (333)
T cd06359 225 EE-DTL-PAVGDAALGLYNTAQWAPDLDNPANKKFVADFEKKY--------GRLPTLYAAQAYDAAQLLDSAVRKVGGNL 294 (333)
T ss_pred CH-HHH-HhcchhhcCeeeccccCCCCCCHHHHHHHHHHHHHh--------CCCCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11 011 1122446777766555432 3578889999998887 33577888999999999999999997642
Q ss_pred CCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEE
Q 008863 351 SSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIV 388 (550)
Q Consensus 351 ~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~ 388 (550)
.+++.+.++|++..|+|++|+++|+.+|+.. ..+.++
T Consensus 295 ~~~~~v~~al~~~~~~~~~G~~~~~~~~~~~-~~~~~~ 331 (333)
T cd06359 295 SDKDALRAALRAADFKSVRGAFRFGTNHFPI-QDFYLR 331 (333)
T ss_pred CCHHHHHHHHhcCccccCccceEECCCCCcc-eeEEEE
Confidence 3789999999999999999999999876653 344444
|
This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized. |
| >cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=265.09 Aligned_cols=316 Identities=17% Similarity=0.218 Sum_probs=255.8
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcC-C--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSD-S--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~-~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
+||++.|++ +..|.....|+++|++++|+. + +|++|++++.|++++|..+...+.+|+.+++|.+|+|+.+|..
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~lav~~inn~~ggi~G~~i~lv~~D~~~~p~~a~~~~~~li~~~~V~avvG~~~S~~ 80 (333)
T cd06328 1 KIGLITDLSGPLAAYGKQTLTGFMLGLEYATGGTMQVDGRPIEVIVKDDAGNPEVAVSLARELIGDDGVDILVGSTSSGV 80 (333)
T ss_pred CeEEEEecCCchhhhhHHHHHHHHHHHHHHHhcCCCcCCEEEEEEEecCCCChHHHHHHHHHHHHhcCCeEEEccCCcHH
Confidence 699999999 467889999999999999654 3 5899999999999999999999999999889999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccC-CCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
+.++.+++++.++|+|+++++ ++..+. ..++|+||+.+++..+...+++++... ++++++|+.+++|| +...+.
T Consensus 81 ~~a~~~~~~~~~ip~i~~~~~--~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~g--~~~~~~ 155 (333)
T cd06328 81 ALAVLPVAEENKKILIVEPAA--ADSITGKNWNRYTFRTGRNSSQDAIAAAAALGKP-GKKIATLAQDYAFG--RDGVAA 155 (333)
T ss_pred HHHHHHHHHHhCCcEEecCCC--CchhhccCCCCcEEEecCChHHHHHHHHHHHHhc-CCeEEEEecCcccc--HHHHHH
Confidence 999999999999999998877 566543 345899999998888888888888666 89999999999999 999999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH-HHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD-MTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~-~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
+++.+++.| ++++....+++. ..|+..++.++++.++|+|++ ..... ....+++++.+.|+... ....
T Consensus 156 ~~~~~~~~G-~~vv~~~~~~~~------~~d~~~~v~~l~~~~pd~V~~-~~~~~~~~~~~~~~~~~~g~~~~---~~~~ 224 (333)
T cd06328 156 FKAALEKLG-AAIVTEEYAPTD------TTDFTPYAQRLLDALKKVLFV-IWAGAGGPWPKLQQMGVLGYGIE---ITLA 224 (333)
T ss_pred HHHHHHhCC-CEEeeeeeCCCC------CcchHHHHHHHHhcCCCEEEE-EecCchhHHHHHHHhhhhcCCCe---EEec
Confidence 999999999 999988877764 379999999999999999988 54444 56677888887776532 2222
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
..+..... ........+|......+....+|..+.|.++|+++| +..|+.+++.+||++.++++|+++++
T Consensus 225 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~--------g~~p~~~~~~~y~a~~~l~~Ai~~ag 294 (333)
T cd06328 225 GDILANLT--MYKAGPGMSGASYYYHYFLPKNPVNDWLVEEHKARF--------GSPPDLFTAGGMSAAIAVVEALEETG 294 (333)
T ss_pred ccccCccc--cccccccccceeeeecCCCCCCHHHHHHHHHHHHHh--------CCCcchhhHHHHHHHHHHHHHHHHhC
Confidence 22211111 011123345555444443244577888989998887 34577788999999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCC
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGEL 379 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~ 379 (550)
.. +++.+.++|++.+|+++.|+++|+..++
T Consensus 295 ~~--~~~~v~~aL~~~~~~~~~g~~~f~~~~~ 324 (333)
T cd06328 295 DT--DTEALIAAMEGMSFETPKGTMTFRKEDH 324 (333)
T ss_pred CC--CHHHHHHHHhCCeeecCCCceEECcccc
Confidence 54 8999999999999999999999995433
|
Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids. |
| >cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=263.61 Aligned_cols=325 Identities=16% Similarity=0.238 Sum_probs=268.8
Q ss_pred EEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+||+++|+++ ..|.....|+++|++++|..-+|++|+++++|+++++..+.+.+.+|+.+++|.+|+|+.++..+.+
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~lv~~~~v~~iig~~~s~~~~~ 80 (336)
T cd06360 1 KVGLLLPYSGTYAALGEDITRGFELALQEAGGKLGGREVEFVVEDDEAKPDVAVEKARKLIEQDKVDVVVGPVHSGEALA 80 (336)
T ss_pred CeEEEEecccchHhhcHhHHHHHHHHHHHhCCCcCCEEEEEEEcCCCCChHHHHHHHHHHHHHhCCcEEEccCccHhHHH
Confidence 6999999984 4567899999999999974336899999999999999999999999998779999999998888888
Q ss_pred HHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
+.+++...++|+|++++. ++... ...+|++||+.|++..++..+++++...+|+++++++.++.|| +...+.+++
T Consensus 81 ~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~~~~~g--~~~~~~~~~ 156 (336)
T cd06360 81 MVKVLREPGTPLINPNAG--ADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAWDYAFG--YEVVEGFKE 156 (336)
T ss_pred HHHHHHhcCceEEecCCC--CccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEeccchhh--HHHHHHHHH
Confidence 889999999999999876 55533 3447899999999999999999999988999999999998998 888999999
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccch
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (550)
.+++.| +++.....++.. ..|+.+++.++++.++|+|++ ......+..+++++++.|+.+. ..|+.++.+.
T Consensus 157 ~~~~~G-~~v~~~~~~~~~------~~d~~~~v~~~~~~~pd~v~~-~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 227 (336)
T cd06360 157 AFTEAG-GKIVKELWVPFG------TSDFASYLAQIPDDVPDAVFV-FFAGGDAIKFVKQYDAAGLKAK-IPLIGSGFLT 227 (336)
T ss_pred HHHHcC-CEEEEEEecCCC------CcchHHHHHHHHhcCCCEEEE-ecccccHHHHHHHHHHcCCccC-CeEEeccccc
Confidence 999999 999877666653 379999999999999999999 8888899999999999999643 2455544432
Q ss_pred hhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccCC
Q 008863 272 NALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNI 350 (550)
Q Consensus 272 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 350 (550)
.. .. .....+..+|++...++... .++..+.|.++|+++|. ..|+.++..+||+++++++|+++++...
T Consensus 228 ~~-~~-~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~~~~--------~~~~~~~~~~yda~~~~~~A~~~a~~~~ 297 (336)
T cd06360 228 DG-TT-LGAAGEAAEGVITALHYADTLDNPANQAFVKAYRAAYP--------DTPSVYAVQGYDAGQALILALEAVGGDL 297 (336)
T ss_pred CH-HH-HHhhHhhhcCceeccccCCCCCCHHHHHHHHHHHHHhC--------CCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11 01 11123456777766554332 45788899999888873 3577889999999999999999997643
Q ss_pred CCHHHHHHHHHhCcccccceeEEEeCCCCCCCC
Q 008863 351 SSPEMLLRQMLSSDFSGLSGKIRFKDGELLNAD 383 (550)
Q Consensus 351 ~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~ 383 (550)
.+++.+.++|++.+|.|..|+++|+++|++...
T Consensus 298 ~~~~~v~~al~~~~~~~~~g~~~f~~~~~~~~~ 330 (336)
T cd06360 298 SDGQALIAAMAAAKIDSPRGPFTLDKAHNPIQD 330 (336)
T ss_pred CCHHHHHHHHhcCCccCCCcceEECCCCCcccc
Confidence 368899999999999999999999998887643
|
This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however. |
| >cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=264.32 Aligned_cols=323 Identities=17% Similarity=0.219 Sum_probs=258.2
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||+++|++ +..|.....|+++|++++|..+ .|++|+++++|++++|..+.+.+.+|+.+++|.+|+|+.++..+
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi~G~~i~lv~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~ 80 (347)
T cd06335 1 KIGVDADFSGGSAPSGVSIRRGARLAIDEINAAGGVLGRKLELVERDDRGNPARGLQNAQELAADEKVVAVLGGLHTPVA 80 (347)
T ss_pred CeeeecCccCccccccHHHHHHHHHHHHHHHhcCCcCCeEEEEEeccCCCCcHHHHHHHHHHhccCCeEEEEcCCCCHHH
Confidence 699999999 4678899999999999999997 58999999999999999999999999987799999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCccc--CCCCCeEEEEecCcHHhHHHHHHHHH-HcCCeEEEEEEEcCCCCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSM--SRRWPYLIRMASNDSEQMKCIADLAR-KYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~al~~~l~-~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.+++++++..+||+|++.++ .+.+. ...++|+||+.|++..++.++++++. +.+|++|+++|++++|| +...+
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~--~~~l~~~~~~~~~~Fr~~~~~~~~~~~~a~~~~~~~~~~~v~ii~~~~~~g--~~~~~ 156 (347)
T cd06335 81 LANLEFIQQNKIPLIGPWAA--GTPITRNGAPPNYIFRVSADDSIQAPFLVDEAVKRGGFKKVALLLDNTGWG--RSNRK 156 (347)
T ss_pred HhhhHHHHhcCCcEEecCCC--CcccccCCCCCCCEEEeccChHHHHHHHHHHHHHhcCCCeEEEEeccCchh--hhHHH
Confidence 99999999999999998876 44432 24568999999999999999999874 56799999999999999 99999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.....++.. ..|+...+++|++.++++|++ .+.......+++++++.|+..+ ++..
T Consensus 157 ~~~~~~~~~G-~~v~~~~~~~~~------~~d~s~~i~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~---~~~~ 225 (347)
T cd06335 157 DLTAALAARG-LKPVAVEWFNWG------DKDMTAQLLRAKAAGADAIII-VGNGPEGAQIANGMAKLGWKVP---IISH 225 (347)
T ss_pred HHHHHHHHcC-CeeEEEeeecCC------CccHHHHHHHHHhCCCCEEEE-EecChHHHHHHHHHHHcCCCCc---Eecc
Confidence 9999999999 999888877764 379999999999999999999 8899999999999999998542 2221
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCC--CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHh
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSD--DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (550)
.... ...... ......+|++....+... .++..++|.++|+++|...... ...++.+++.+||+++++++|+++
T Consensus 226 ~~~~-~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~aYd~~~~l~~A~~~ 301 (347)
T cd06335 226 WGLS-GGNFIE-GAGPAANDALMIQTFIFEPPSNPKAKAFLAAYHKKYPEKKPA--DIPAPVGAAHAYDAVHLLAAAIKQ 301 (347)
T ss_pred cCCc-Cchhhh-ccchhhcCcEEEEeeccccCCCHHHHHHHHHHHHHhCCCccc--ccCcchhHHHHHHHHHHHHHHHHH
Confidence 1111 111110 112345676655443322 4588899999999987532100 113455678899999999999999
Q ss_pred hccCCCCHHHHHHHHHhC--ccccccee--EEEeCCCC
Q 008863 346 LNYNISSPEMLLRQMLSS--DFSGLSGK--IRFKDGEL 379 (550)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~--~~~G~tG~--i~f~~~g~ 379 (550)
++.. +++.++++|+++ .+.|+.|. +.|+...+
T Consensus 302 ag~~--~~~~v~~al~~~~~~~~G~~~~~~~~~~~~~h 337 (347)
T cd06335 302 AGST--DGRAIKRALENLKKPVEGLVKTYDKPFSKEDH 337 (347)
T ss_pred hcCC--CHHHHHHHHHhccCCceeeecccCCCCChhhc
Confidence 9875 668999999876 45677773 45765443
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=259.97 Aligned_cols=316 Identities=17% Similarity=0.221 Sum_probs=258.8
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|||++.|++ +..|.....|+++|++++|+.+ .|++|++.++|++++|..+.+++.+|+.+++|.+|+|+.++..+
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~v~aviG~~~s~~a 80 (333)
T cd06358 1 RIGLLVPLSGPAGIFGPSCEAAAELAVEEINAAGGILGREVELVIVDDGSPPAEAAAAAARLVDEGGVDAIIGWHTSAVR 80 (333)
T ss_pred CeEEEecCcCchhhcchhHHHHHHHHHHHHHhcCCcCCcEEEEEEECCCCChHHHHHHHHHHHHhCCCcEEEecCcHHHH
Confidence 699999998 4578899999999999999888 58999999999999999999999999987899999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.++.++++ .++|+|++.+. +.. ...+|+||+.+++..+..++++++ +..+|++|+++++++.|| +...+.+
T Consensus 81 ~a~~~~~~-~~vp~i~~~~~--~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i~~~~~~~g--~~~~~~~ 152 (333)
T cd06358 81 NAVAPVVA-GRVPYVYTSLY--EGG---ECNPGVFLTGETPEQQLAPAIPWLAEEKGARRWYLIGNDYVWP--RGSLAAA 152 (333)
T ss_pred HHHHHHHh-cCceEEeCCCc--CCC---CCCCCEEEcCCCcHHHHHHHHHHHHHhcCCCeEEEEeccchhh--HHHHHHH
Confidence 99999999 99999997654 222 245899999999999988888887 457999999999999999 8889999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| ++|+....++. ...|+.+++.++++.++|+|++ .........+++++++.|+..+. ...+..
T Consensus 153 ~~~~~~~G-~~v~~~~~~~~------~~~d~~~~v~~l~~~~pd~v~~-~~~~~~~~~~~~~~~~~G~~~~~--~~~~~~ 222 (333)
T cd06358 153 KRYIAELG-GEVVGEEYVPL------GTTDFTSVLERIAASGADAVLS-TLVGQDAVAFNRQFAAAGLRDRI--LRLSPL 222 (333)
T ss_pred HHHHHHcC-CEEeeeeeecC------ChHHHHHHHHHHHHcCCCEEEE-eCCCCchHHHHHHHHHcCCCccC--ceeecc
Confidence 99999999 99988777776 3489999999999999999998 77877888999999999997642 112222
Q ss_pred chhh-cccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 270 VANA-LDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 270 ~~~~-~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
+... .... .....+|.+....+.+ ...+..++|.++|+++|... ...++.++..+||+++++++|+++++
T Consensus 223 ~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~-----~~~~~~~~~~~yda~~~~~~A~~~ag 294 (333)
T cd06358 223 MDENMLLAS---GAEAAEGLYSSSGYFASLQTPANAAFLARYRARFGDD-----APPLNSLSESCYEAVHALAAAAERAG 294 (333)
T ss_pred cCHHHHHhc---ChHhhCCcEEeccchhhcCCHHHHHHHHHHHHHcCCC-----CCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 2221 1101 1134567665544332 24478889988888887431 12356678889999999999999988
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCC
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGEL 379 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~ 379 (550)
.. ++..|.++|++.+|+|.+|.+.|++++.
T Consensus 295 ~~--~~~~v~~al~~~~~~~~~G~~~~~~~~~ 324 (333)
T cd06358 295 SL--DPEALIAALEDVSYDGPRGTVTMRGRHA 324 (333)
T ss_pred CC--CHHHHHHHhccCeeeCCCcceEEccccc
Confidence 75 8999999999999999999999997754
|
This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int |
| >cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=259.66 Aligned_cols=317 Identities=15% Similarity=0.183 Sum_probs=257.7
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||++.|++ +..|.....++++|++++|+.+ .|++|+++.+|++++|..+...+.+|+.+++|.+|+|+.+|..+
T Consensus 1 ~IG~~~~lSG~~a~~G~~~~~g~~la~~~iNa~gGi~Gr~v~lv~~D~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s~~~ 80 (334)
T cd06356 1 KVGSLEDRSGNFALYGTPKVHATQLAVDEINASGGILGREVELVDYDTQSDNERYQQYAQRLALQDKVDVVWGGISSASR 80 (334)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCCCCceEEEEEECCCCCHHHHHHHHHHHHHhCCCCEEEeCcchHHH
Confidence 699999999 5678999999999999999987 58999999999999999999999999988899999999999999
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.++.+++++.++|+|.+... .. ....+|+||+.+++..+..++++++...+-+++++|+.+++|| ......++
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~--~~---~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~vail~~d~~~g--~~~~~~~~ 153 (334)
T cd06356 81 EAIRPIMDRTKQLYFYTTQY--EG---GVCDRNTFCTGATPAQQFSTLVPYMMEKYGKKVYTIAADYNFG--QISAEWVR 153 (334)
T ss_pred HHHHHHHHhcCceEEeCCCc--cC---CcccCCEEEeCCCcHHHHHHHHHHHHHccCCeEEEECCCchhh--HHHHHHHH
Confidence 99999999999999986543 22 1234899999999999999999999775558899999999999 99999999
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
+.+++.| ++++....++.. ..|++.+++++++.++|+|++ .........+++++++.|+ .. ...+.....
T Consensus 154 ~~~~~~G-~~vv~~~~~~~~------~~d~~~~v~~l~~~~pd~v~~-~~~~~~~~~~~~~~~~~G~-~~-~~~~~~~~~ 223 (334)
T cd06356 154 KIVEENG-GEVVGEEFIPLD------VSDFGSTIQKIQAAKPDFVMS-ILVGANHLSFYRQWAAAGL-GN-IPMASSTLG 223 (334)
T ss_pred HHHHHcC-CEEEeeeecCCC------chhHHHHHHHHHhcCCCEEEE-eccCCcHHHHHHHHHHcCC-cc-Cceeeeecc
Confidence 9999999 999988878764 379999999999999999999 8778888899999999999 21 112221111
Q ss_pred hhh--cccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 271 ANA--LDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 271 ~~~--~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
... ..... ....+|++....+... ..|..++|.++|+++|... ..++..++.+||+++++++|+++++
T Consensus 224 ~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~------p~~~~~~~~~y~a~~~~~~A~~~ag 294 (334)
T cd06356 224 AQGYEHKRLK---PPALKDMYATANYIEELDTPANKAFVERFRAKFPDA------PYINEEAENNYEAIYLYKEAVEKAG 294 (334)
T ss_pred cchhHHhccC---chhcCCeEEecchhhhcCCHHHHHHHHHHHHHcCCC------CCCCchhHHHHHHHHHHHHHHHHHC
Confidence 000 00111 1345677655544332 3467888988888887421 1124678899999999999999998
Q ss_pred cCCCCHHHHHHHHHh-CcccccceeEEEeCCCCC
Q 008863 348 YNISSPEMLLRQMLS-SDFSGLSGKIRFKDGELL 380 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~-~~~~G~tG~i~f~~~g~~ 380 (550)
.. +++.|+++|++ ..++|+.|++.|+..++.
T Consensus 295 ~~--~~~~v~~aL~~~~~~~~~~g~~~~~~~~h~ 326 (334)
T cd06356 295 TT--DRDAVIEALESGLVCDGPEGKVCIDGKTHH 326 (334)
T ss_pred CC--CHHHHHHHHHhCCceeCCCceEEEecCCCc
Confidence 75 89999999997 578999999999975554
|
This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis. |
| >cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-30 Score=254.27 Aligned_cols=320 Identities=18% Similarity=0.255 Sum_probs=257.9
Q ss_pred EEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+||+++|+++ ..|.....|+++|++++|..-+|++|+++++|+.+++..+.+.+.+++.+++|.+|||+.++....+
T Consensus 1 ~IG~~~~~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~ 80 (333)
T cd06332 1 KIGLLTTLSGPYAALGQDIRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGPVFSNVALA 80 (333)
T ss_pred CeEEEeeccCchHhhhHHHHHHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcCCccHHHHH
Confidence 6999999994 4567899999999999984337899999999999999999999999998669999999988888888
Q ss_pred HHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
+...+...++|+|++++. .+.. +...+|++||+.|++..+...+++++...+|+++++|+.++.+| ....+.+++
T Consensus 81 ~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~~~~~--~~~~~~~~~ 156 (333)
T cd06332 81 VVPSLTESGTFLISPNAG--PSDLAGKLCSPNFFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPDYAAG--KDAVAGFKR 156 (333)
T ss_pred HHHHHhhcCCeEEecCCC--CccccccCCCCcEEEeeCChHHhHHHHHHHHHHhCCceEEEEecCcchh--HHHHHHHHH
Confidence 888999999999999876 4443 33347999999999999999999999999999999999988888 888888888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccch
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (550)
.++ + .+.....++.. ..|+.++++++++.++++|++ .........+++++++.|+.+. ..++.+..+.
T Consensus 157 ~~~--~--~~~~~~~~~~~------~~d~~~~i~~l~~~~~d~i~~-~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~ 224 (333)
T cd06332 157 TFK--G--EVVEEVYTPLG------QLDFSAELAQIRAAKPDAVFV-FLPGGMAVNFVKQYDQAGLKKK-IPLYGPGFLT 224 (333)
T ss_pred hhc--E--EEeeEEecCCC------CcchHHHHHHHHhcCCCEEEE-ecccchHHHHHHHHHHcCcccC-CceeccCCCC
Confidence 887 4 34444444442 357888999999999999999 8887889999999999999542 3456554433
Q ss_pred hhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccCC
Q 008863 272 NALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNI 350 (550)
Q Consensus 272 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 350 (550)
.. ... .......+|++...++.+. .++..++|.++|.++|. ..+..++..+||+++++++|+++++...
T Consensus 225 ~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~~~yda~~~~~~a~~~ag~~~ 294 (333)
T cd06332 225 DQ-DTL-PAQGDAAVGVLTALHWAPDLDNPANKRFVAAYKAAYG--------RVPSVYAAQGYDAAQLLDAALRAVGGDL 294 (333)
T ss_pred CH-HHH-HhhchhhcCeeeeeccCCCCCCHHHHHHHHHHHHHhC--------CCCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 21 010 1122456777766655432 34778889999888873 3467788999999999999999987643
Q ss_pred CCHHHHHHHHHhCcccccceeEEEeCCCCCC
Q 008863 351 SSPEMLLRQMLSSDFSGLSGKIRFKDGELLN 381 (550)
Q Consensus 351 ~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~ 381 (550)
.++..+.++|++.+|+|++|+++|+++|+..
T Consensus 295 ~~~~~v~~al~~~~~~~~~g~i~f~~~~~~~ 325 (333)
T cd06332 295 SDKDALRAALRAADFDSPRGPFKFNPNHNPI 325 (333)
T ss_pred CCHHHHHHHHhcCceecCccceeECCCCCcc
Confidence 4678999999999999999999999887764
|
This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea. |
| >cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=259.01 Aligned_cols=325 Identities=16% Similarity=0.155 Sum_probs=256.0
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|||++.|++ +..|.....|+++|+++||+.+ +|++|+++++|++++|..+.+.+.+|+.+++|.+|+ +.+|..+
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iNa~GGI~Gr~ielv~~D~~~~p~~a~~~a~~Li~~~~V~~i~-~~~S~~~ 79 (351)
T cd06334 1 KVGLLADRTGPTAFVGIPYAAGFADYFKYINEDGGINGVKLEWEECDTGYEVPRGVECYERLKGEDGAVAFQ-GWSTGIT 79 (351)
T ss_pred CCCccccCCCcccccChhHHHHHHHHHHHHHHcCCcCCeEEEEEEecCCCCcHHHHHHHHHHhccCCcEEEe-cCcHHHH
Confidence 689999999 5678899999999999999998 689999999999999999999999999877888876 5778888
Q ss_pred HHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcC-----CeEEEEEEEcCCCCCcch
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYN-----WRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~-----w~~v~ii~~~~~~g~~~~ 184 (550)
.++.+++.+.+||+|+++++ ++... ...++|+||+.|++..+..++++++...+ .+++++|+.++.|| +.
T Consensus 80 ~a~~~~~~~~~vp~i~~~~~--~~~~~~~~~~~~~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g--~~ 155 (351)
T cd06334 80 EALIPKIAADKIPLMSGSYG--ATLADDGAVFPYNFPVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSPFG--KE 155 (351)
T ss_pred HHhhHHHhhcCCcEEecccc--hhhccCCCCCCeeeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCccc--hh
Confidence 89999999999999998876 44443 45689999999999999999999997654 79999999999999 99
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
..+.+++.+++.| ++++....++.. ..|+..++.++++.++|+|++ .....+...++++++++|+.. .|
T Consensus 156 ~~~~~~~~~~~~G-~~vv~~~~~~~~------~~D~~~~v~~i~~~~pd~V~~-~~~~~~~~~~~~~~~~~G~~~---~~ 224 (351)
T cd06334 156 PIEALKALAEKLG-FEVVLEPVPPPG------PNDQKAQWLQIRRSGPDYVIL-WGWGVMNPVAIKEAKRVGLDD---KF 224 (351)
T ss_pred hHHHHHHHHHHcC-CeeeeeccCCCC------cccHHHHHHHHHHcCCCEEEE-ecccchHHHHHHHHHHcCCCc---eE
Confidence 9999999999999 999988777764 379999999999999999999 888889999999999999954 34
Q ss_pred EEeccchhhcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHH
Q 008863 265 IVTNTVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAI 343 (550)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al 343 (550)
+.+..... .... .......+|++....+.. ..+|..++|.+.|++++.... . ....++.++..+||+++++++|+
T Consensus 225 ~~~~~~~~-~~~~-~~~g~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~-~-~~~~~~~~~~~gy~a~~~l~~Al 300 (351)
T cd06334 225 IGNWWSGD-EEDV-KPAGDAAKGYKGVTPFAGGADDPVGKEIVKEVYDKGKGSG-N-DKEIGSVYYNRGVVNAMIMVEAI 300 (351)
T ss_pred EEeeccCc-HHHH-HHhhhhhcCcEEeecccCCCCchHHHHHHHHHHHccCCCC-C-cccccccHHHHHHHHHHHHHHHH
Confidence 44322111 1111 112245677776655433 245888888888888763211 0 00234678889999999999999
Q ss_pred HhhccCC----CCHH-------HHHHHHHhCcccccceeEEEeCCCCC
Q 008863 344 GRLNYNI----SSPE-------MLLRQMLSSDFSGLSGKIRFKDGELL 380 (550)
Q Consensus 344 ~~~~~~~----~~~~-------~l~~~l~~~~~~G~tG~i~f~~~g~~ 380 (550)
+++++.. ..+. ...+.+.+....|+.|+++|....++
T Consensus 301 ~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~ 348 (351)
T cd06334 301 RRAQEKGGETTIAGEEQLENLKLDAARLEELGAEGLGPPVSVSCDDHR 348 (351)
T ss_pred HHHHHhcCCCCCcHHHHHHhhhhhhhhhhhcCcccccCCceeccccCC
Confidence 9997651 1111 22234455667789999999864443
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-30 Score=253.99 Aligned_cols=329 Identities=14% Similarity=0.190 Sum_probs=256.3
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CC--cEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RN--HKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~--~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
|||++.|++ +..|.....+++++++++|..+ +| ++|+++++|++++|..+.+.+.+|+.+++|.+|+|+.+|.
T Consensus 1 kIG~~~~lSG~~a~~G~~~~~~~~~~~~~in~g~~i~G~~~~i~lv~~D~~~~p~~a~~~a~~li~~d~v~~iiG~~~s~ 80 (357)
T cd06337 1 KIGYVSPRTGPLAAFGEADPWVLETMRSALADGLVVGGSTYEVEIIVRDSQSNPNRAGLVAQELILTDKVDLLLAGGTPD 80 (357)
T ss_pred CcceeccCcCcccccccchHHHHHHHHHHhcCCeeECCceeEEEEEEecCCCCHHHHHHHHHHHHhccCccEEEecCCcc
Confidence 599999999 4668888899999999999654 34 5899999999999999999999999988999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCc------cc-CCCCCeEEEEecCcHHhHHHHHHHHHHcC-CeEEEEEEEcCCCC
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPL------SM-SRRWPYLIRMASNDSEQMKCIADLARKYN-WRRVAAIYEDNVYG 180 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~------~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~-w~~v~ii~~~~~~g 180 (550)
.+.++++++++.+||+|++.+. .+. .. ...++|+|+..+++..+..+++++++..+ ++++++++.++.||
T Consensus 81 ~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~k~v~ii~~~~~~g 158 (357)
T cd06337 81 TTNPVSDQCEANGVPCISTMAP--WQAWFFGRGGNPATGFKWTYHFFWGAEDVVATYVGMWKQLETNKKVGILYPNDPDG 158 (357)
T ss_pred hhhHHHHHHHHhCCCeEEeccc--hhhhhccCCCCcccCCceeEEecCCHHHHHHHHHHHHHhCCCCceEEEEeecCchh
Confidence 9999999999999999997543 111 11 22468999999999888899999888877 99999999999998
Q ss_pred CcchhHHHHH---HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 181 GDSGKLALLA---EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 181 ~~~~~~~~l~---~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
....+.+. +.+++.| ++++..+.++... .|+.+++.+|+++++|+|++ .+....+..++++++++|+
T Consensus 159 --~~~~~~~~~~~~~~~~~G-~~vv~~~~~~~~~------~D~~~~v~~ik~a~pD~v~~-~~~~~~~~~~~~~~~~~G~ 228 (357)
T cd06337 159 --NAFADPVIGLPAALADAG-YKLVDPGRFEPGT------DDFSSQINAFKREGVDIVTG-FAIPPDFATFWRQAAQAGF 228 (357)
T ss_pred --HHHHHhhhcccHHHHhCC-cEEecccccCCCC------CcHHHHHHHHHhcCCCEEEe-CCCccHHHHHHHHHHHCCC
Confidence 76666554 5667789 9998888777643 79999999999999999999 8899999999999999999
Q ss_pred CCCCEEEEE-eccc--hhhcccCChhHHhhcCceEEEEeecCC-------CChhHHHHHHHHHHHhhccCCCCCCCCCCc
Q 008863 258 VGKDSVWIV-TNTV--ANALDSLNTTVISSMEGTLGIKSYYSD-------DSSPYKEFSALFRRNFTSEYPEEDHFHPSI 327 (550)
Q Consensus 258 ~~~~~~~i~-~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 327 (550)
..+ ++. .... ........ +..+|++....+.+. .++..++|.++|+++|. ..+..
T Consensus 229 ~~~---~~~~~~~~~~~~~~~~~g----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g--------~~~~~ 293 (357)
T cd06337 229 KPK---IVTIAKALLFPEDVEALG----DRGDGMSTEVWWSPSHPFRSSLTGQSAAELADAYEAATG--------RQWTQ 293 (357)
T ss_pred CCC---eEEEeccccCHHHHHHhh----hhhcCccccceeccCCCcccccCCccHHHHHHHHHHHhC--------CCccC
Confidence 764 222 1111 11111111 223555543322221 12457888888888874 23445
Q ss_pred hhhHHhHHHHHHHHHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCee
Q 008863 328 HALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKY 395 (550)
Q Consensus 328 ~~~~~yDav~~~a~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~ 395 (550)
...++|+++.++++|++++++. .+++.|+++|++++++++.|+++|+++ . ..+..|+.+.+++|
T Consensus 294 ~~~~~~~~~~~l~~Ai~~Ags~-~d~~~v~~aL~~~~~~~~~G~~~f~~~--~-~~~~~~~~~~~~~~ 357 (357)
T cd06337 294 PLGYAHALFEVGVKALVRADDP-DDPAAVADAIATLKLDTVVGPVDFGNS--P-IKNVAKTPLVGGQW 357 (357)
T ss_pred cchHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHcCCcccceeeeecCCC--C-CccccccccccCCC
Confidence 5677999999999999999763 378899999999999999999999865 2 34566666666543
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-30 Score=239.68 Aligned_cols=337 Identities=16% Similarity=0.221 Sum_probs=239.4
Q ss_pred EEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCC--CcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 35 TKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 35 i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~--~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
||||+|+.+++ ..+.....|..+|+++||++|+ |++|+.+++|.++|+..-.+.+.+|+.+++|.+|||+.+|.+
T Consensus 1 ikVGiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GGvlG~~le~v~~Dp~Sd~~~ya~~A~~Li~~d~V~~ifGc~TSas 80 (363)
T PF13433_consen 1 IKVGILHSLTGTMAISERSLLDGALLAIEEINAAGGVLGRQLEPVIYDPASDPSTYAEKAEKLIREDGVRAIFGCYTSAS 80 (363)
T ss_dssp --EEEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTTBTTB--EEEEE--TT-HHHHHHHHHHHHHHS---EEEE--SHHH
T ss_pred CeEEEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCCcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCccEEEecchhhh
Confidence 79999999994 4566888999999999999994 899999999999999999999999998899999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
-.++.++.++++-+++.+... ......|++|-+.....++...+++++ .++|.+++.+|.+|+.|+ +...+.
T Consensus 81 RKaVlPvvE~~~~LL~Yp~~Y-----EG~E~S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv~p--re~Nri 153 (363)
T PF13433_consen 81 RKAVLPVVERHNALLFYPTQY-----EGFECSPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVGSDYVYP--RESNRI 153 (363)
T ss_dssp HHHHHHHHHHCT-EEEE-S-------------TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEEESSHHH--HHHHHH
T ss_pred HHHHHHHHHhcCceEEecccc-----ccccCCCceEEcCCCchhhHHHHHHHHHhccCCceEEEecCCccch--HHHHHH
Confidence 999999999999999976644 122345789999999999999999998 678999999999999999 999999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+.+.| +++.....++. ..+|+..++.+|++.++|+|+- ...++....|+++.++.|+..+. .-|.+.
T Consensus 154 ~r~~l~~~G-gevvgE~Y~pl------g~td~~~ii~~I~~~~Pd~V~s-tlvG~s~~aF~r~~~~aG~~~~~-~Pi~S~ 224 (363)
T PF13433_consen 154 IRDLLEARG-GEVVGERYLPL------GATDFDPIIAEIKAAKPDFVFS-TLVGDSNVAFYRAYAAAGLDPER-IPIASL 224 (363)
T ss_dssp HHHHHHHTT--EEEEEEEE-S-------HHHHHHHHHHHHHHT-SEEEE-E--TTCHHHHHHHHHHHH-SSS----EEES
T ss_pred HHHHHHHcC-CEEEEEEEecC------CchhHHHHHHHHHhhCCCEEEE-eCcCCcHHHHHHHHHHcCCCccc-CeEEEE
Confidence 999999999 99999998887 4589999999999999999998 99999999999999999998664 334443
Q ss_pred cch-hhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 269 TVA-NALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 269 ~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
... ..+...+ .+...|.+....|... ++|..++|.++|+++|.. +..++...-.+|-+|+++++|++++
T Consensus 225 ~~~E~E~~~~g---~~~~~Gh~~~~~YFqsidtp~N~~Fv~~~~~~~g~------~~v~s~~~eaaY~~v~l~a~Av~~a 295 (363)
T PF13433_consen 225 STSEAELAAMG---AEAAAGHYTSAPYFQSIDTPENQAFVARFRARYGD------DRVTSDPMEAAYFQVHLWAQAVEKA 295 (363)
T ss_dssp S--HHHHTTS----HHHHTT-EEEES--TT-SSHHHHHHHHHHHTTS-T------T----HHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHhhcC---hhhcCCcEEeehhhhhCCcHHHHHHHHHHHHHhCC------CCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 332 2222232 2467899988888765 458999999999998854 2244556667999999999999999
Q ss_pred ccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEE
Q 008863 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKEL 398 (550)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~v 398 (550)
++. +.+.++++|...+|+...|.+++|...+-......|-+++ +++|..|
T Consensus 296 gs~--d~~~vr~al~g~~~~aP~G~v~id~~n~H~~l~~rIg~~~~dG~f~Iv 346 (363)
T PF13433_consen 296 GSD--DPEAVREALAGQSFDAPQGRVRIDPDNHHTWLPPRIGRVNADGQFDIV 346 (363)
T ss_dssp TS----HHHHHHHHTT--EEETTEEEEE-TTTSBEEB--EEEEE-TTS-EEEE
T ss_pred CCC--CHHHHHHHhcCCeecCCCcceEEcCCCCeecccceEEEEcCCCCEEEE
Confidence 987 9999999999999999999999997433323444555554 3555544
|
|
| >cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=241.01 Aligned_cols=320 Identities=15% Similarity=0.171 Sum_probs=251.5
Q ss_pred EEEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 35 TKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 35 i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
|+||++.|++ +..|.....|+++|++++|+.+ .|++|++..+|+++|+..+.+.+.+++.+++|.+|||+.++..
T Consensus 1 i~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~ggi~G~~v~l~~~D~~~d~~~~~~~~~~l~~~~~v~avig~~~s~~ 80 (336)
T cd06326 1 IVLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGGVNGRKIELVTLDDGYEPERTVANTRKLIEDDKVFALFGYVGTPT 80 (336)
T ss_pred CEEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCCcCCceEEEEEeCCCCChHHHHHHHHHHHhhcCcEEEEeCCCchh
Confidence 6999999999 4567889999999999999988 5899999999999999999999999998569999999988877
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
+..+.+++...++|+|++++. ++.......+++|++.++....+..+++++.+.+|+++++|+.++.++ ....+.+
T Consensus 81 ~~~~~~~~~~~~iP~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~~~~~~~--~~~~~~~ 156 (336)
T cd06326 81 TAAALPLLEEAGVPLVGPFTG--ASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGLKRIAVFYQDDAFG--KDGLAGV 156 (336)
T ss_pred HHHHHHHHHHcCCeEEEecCC--cHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCCceEEEEEecCcch--HHHHHHH
Confidence 777888999999999998765 343333346899999999999999999999999999999999988888 8899999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| +++.....++.. ..|+..++.++++.++++|++ ..+...+..++++++++|+..+ ..+ ...
T Consensus 157 ~~~~~~~G-~~~~~~~~~~~~------~~d~~~~~~~l~~~~~dav~~-~~~~~~a~~~i~~~~~~G~~~~-~~~--~~~ 225 (336)
T cd06326 157 EKALAARG-LKPVATASYERN------TADVAAAVAQLAAARPQAVIM-VGAYKAAAAFIRALRKAGGGAQ-FYN--LSF 225 (336)
T ss_pred HHHHHHcC-CCeEEEEeecCC------cccHHHHHHHHHhcCCCEEEE-EcCcHHHHHHHHHHHhcCCCCc-EEE--Eec
Confidence 99999999 887776556543 368899999999889999999 8877789999999999999653 122 222
Q ss_pred chhhcccCChhHHhhcCceEEEEee--c-CCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSY--Y-SDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~--~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
.... .+ ........+|++....+ . ....|..++|.+.|++.+.. ..++.++..+||+++++.+|++++
T Consensus 226 ~~~~-~~-~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~~~~~~~~~y~~~~~~~~a~~~~ 296 (336)
T cd06326 226 VGAD-AL-ARLLGEYARGVIVTQVVPNPWSRTLPIVREYQAAMKAYGPG-------APPSYVSLEGYIAAKVLVEALRRA 296 (336)
T ss_pred cCHH-HH-HHHhhhhhcceEEEEEecCccccCCHHHHHHHHHHHhhCCC-------CCCCeeeehhHHHHHHHHHHHHHc
Confidence 1111 00 11112345676543221 1 12246677777777766531 256677888999999999999998
Q ss_pred ccCCCCHHHHHHHHHhCcccccc-eeEEEeCCCC
Q 008863 347 NYNISSPEMLLRQMLSSDFSGLS-GKIRFKDGEL 379 (550)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~~~G~t-G~i~f~~~g~ 379 (550)
+.. .+++.++++|++++..... +.++|+...+
T Consensus 297 g~~-~~~~~v~~al~~~~~~~~~g~~~~~~~~~h 329 (336)
T cd06326 297 GPD-PTRESLLAALEAMGKFDLGGFRLDFSPGNH 329 (336)
T ss_pred CCC-CCHHHHHHHHHhcCCCCCCCeEEecCcccc
Confidence 763 4899999999998765444 4999976433
|
The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however. |
| >cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=236.43 Aligned_cols=279 Identities=26% Similarity=0.420 Sum_probs=234.8
Q ss_pred EEEEEEecCC-----ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc----CCeEEEEcCCC
Q 008863 36 KIGAIVDANS-----QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK----EKVKVIAGMET 106 (550)
Q Consensus 36 ~IG~i~~~~~-----~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~----~~v~aiiG~~~ 106 (550)
+||++++.+. ..+.....++..+++++|...+++++++.+.|+++++..+...+.+++.. +++.+|+||.+
T Consensus 1 ~iG~~f~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~aiiG~~~ 80 (298)
T cd06269 1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINNDLPNTTLGYEIYDSCCSPSDAFSAALDLCSLLEKSRGVVAVIGPSS 80 (298)
T ss_pred CEEEEeecccccccCHHHHHHHHHHHHHHHHHhccCCCCeeeeEEEecCCChHHHHHHHHHHHhcCCCCCceEEEECCCC
Confidence 4899999863 35667888999999999987678999999999999999999999888875 69999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
+..+.+++.+++.+++|+|+++++ ++. .++..+|+++|+.|++..++.++++++++++|++|+++|++++++ ...
T Consensus 81 s~~~~~v~~~~~~~~iP~is~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~~~~~~--~~~ 156 (298)
T cd06269 81 SSSAEAVASLLGALHIPQISYSAT--SPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYG--RRL 156 (298)
T ss_pred chHHHHHHHHhccCCCcEEecccC--chhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEecchhh--HHH
Confidence 999999999999999999999988 555 345678999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.+.+++.+.+.+ +++.....++.. ..++...++++++.++++|++ ++..+.+..+++++.++||+ .+|+||
T Consensus 157 ~~~~~~~~~~~~-~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~viv~-~~~~~~~~~~l~~a~~~g~~-~~~~~i 227 (298)
T cd06269 157 LELLEEELEKNG-ICVAFVESIPDG------SEDIRRLLKELKSSTARVIVV-FSSEEDALRLLEEAVELGMM-TGYHWI 227 (298)
T ss_pred HHHHHHHHHHCC-eeEEEEEEcCCC------HHHHHHHHHHHHhcCCcEEEE-EechHHHHHHHHHHHHcCCC-CCeEEE
Confidence 999999999989 999888776653 378999999999999999999 88889999999999999998 779999
Q ss_pred Eeccchhh-cccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHH
Q 008863 266 VTNTVANA-LDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 266 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (550)
.++.|... .+. .......+.++... .+.++|||+++
T Consensus 228 ~~~~~~~~~~~~---~~~~~~~~~~~~~~----------------------------------~~~~~~dav~~------ 264 (298)
T cd06269 228 ITDLWLTSCLDL---ELLEYFPGNLTGFG----------------------------------EAALVYDAVYA------ 264 (298)
T ss_pred EEChhhcccccc---CCccccceEEEEEE----------------------------------eeEeEEEEEEe------
Confidence 99988653 111 11122333332221 24566777776
Q ss_pred hhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEEEEEeC
Q 008863 345 RLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLP 403 (550)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~ 403 (550)
|.+.+..+.+++.. ...+++||.|++
T Consensus 265 ---------------------------------~~~~~~~~~~~~~~~~~~~~~vg~w~~ 291 (298)
T cd06269 265 ---------------------------------GRRANYDLDIIQLTPSGGFVKVGTWSP 291 (298)
T ss_pred ---------------------------------cCcCCceEEEEEECCCCCEEEEEEEcC
Confidence 66667888888887 788999999996
|
This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va |
| >cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=238.09 Aligned_cols=302 Identities=17% Similarity=0.194 Sum_probs=238.8
Q ss_pred EEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+||+++|+++ ..|.....|+++|++++| |++++++++|+.+ +..+...+.+|+. ++|.+||||.++..+.+
T Consensus 1 kIG~l~plsG~~a~~g~~~~~g~~lA~~~in----G~~i~l~~~D~~~-~~~a~~~~~~li~-~~V~~iiG~~~s~~~~a 74 (336)
T cd06339 1 RIALLLPLSGPLASVGQAIRNGFLAALYDLN----GASIELRVYDTAG-AAGAAAAARQAVA-EGADIIVGPLLKENVAA 74 (336)
T ss_pred CeEEEEcCCCcchHHHHHHHHHHHHHHHhcc----CCCceEEEEeCCC-cccHHHHHHHHHH-cCCCEEEccCCHHHHHH
Confidence 5999999994 568888999999999999 7899999999999 9999999999997 59999999999999888
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
+++++...++|+|+++.. .... . .+++||+.+++..++.++++++...+++++++|+++++|| ....+.+++.
T Consensus 75 ~~~~~~~~~ip~i~~~~~--~~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g--~~~~~~f~~~ 147 (336)
T cd06339 75 LAAAAAELGVPVLALNND--ESVA-A--GPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAPDGAYG--QRVADAFRQA 147 (336)
T ss_pred HHhhhccCCCCEEEccCC--cccc-C--CCCEEEecCChHHHHHHHHHHHHhcCccceEEEecCChHH--HHHHHHHHHH
Confidence 889999999999998765 3222 1 5889999999999999999999888999999999999999 9999999999
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---------------------CCeEEEEEcCCHH-HHHHHHH
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---------------------QSRVFIVLQASLD-MTIHLFT 250 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---------------------~~~~ii~~~~~~~-~~~~il~ 250 (550)
+++.| ++|+....++. ...|+...+.+|++. ++|.|++ ...+. ....+.+
T Consensus 148 ~~~~G-~~vv~~~~~~~------~~~d~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~-~~~~~~~~~~~~~ 219 (336)
T cd06339 148 WQQLG-GTVVAIESYDP------SPTDLSDAIRRLLGVDDSEQRIAQLKSLESEPRRRQDIDAIDA-VALPDGEARLIKP 219 (336)
T ss_pred HHHcC-CceeeeEecCC------CHHHHHHHHHHHhccccchhhhhhhhhcccCccccCCCCcEEE-EecChhhhhhhcc
Confidence 99999 99998887876 448999999999998 9999988 66665 6667777
Q ss_pred HHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCC-Cchh
Q 008863 251 EANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHP-SIHA 329 (550)
Q Consensus 251 ~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~ 329 (550)
+++..+.....-.++.++.|... .+.. ......+|++..... . ....+|.++|+++| +..| +.++
T Consensus 220 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~-~~g~~~~g~~~~~~~--~--~~~~~f~~~y~~~~--------~~~p~~~~~ 285 (336)
T cd06339 220 QLLFYYGVPGDVPLYGTSRWYSG-TPAP-LRDPDLNGAWFADPP--W--LLDANFELRYRAAY--------GWPPLSRLA 285 (336)
T ss_pred hhhhhccCcCCCCEEEeccccCC-CCCc-ccCcccCCcEEeCCC--c--ccCcchhhhHHHHh--------cCCCCchHH
Confidence 77766541111256777666532 1111 112345676543321 1 12237778888777 4456 8899
Q ss_pred hHHhHHHHHHHHHHHhhccCCCCHHHHHHHHH-hCcccccceeEEEeCCCCC
Q 008863 330 LRAHDSIKIITEAIGRLNYNISSPEMLLRQML-SSDFSGLSGKIRFKDGELL 380 (550)
Q Consensus 330 ~~~yDav~~~a~Al~~~~~~~~~~~~l~~~l~-~~~~~G~tG~i~f~~~g~~ 380 (550)
+.+|||+.+++.++++.... . ++. ...|+|++|+++|+++|+.
T Consensus 286 a~~YDa~~l~~~~~~~~~~~--~------al~~~~~~~g~~G~~~f~~~g~~ 329 (336)
T cd06339 286 ALGYDAYALAAALAQLGQGD--A------ALTPGAGFSGVTGVLRLDPDGVI 329 (336)
T ss_pred HHHHhHHHHHHHHHHccccc--c------ccCCCCccccCcceEEECCCCeE
Confidence 99999999999888776543 2 333 3478999999999988865
|
This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT). |
| >KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=241.94 Aligned_cols=356 Identities=21% Similarity=0.259 Sum_probs=283.7
Q ss_pred CCCCcEEEEEEEecC-----CccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEE
Q 008863 30 NIEEVTKIGAIVDAN-----SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKV 100 (550)
Q Consensus 30 ~~~~~i~IG~i~~~~-----~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~a 100 (550)
+...+..|++++|+. ...|.....|+++|++++|+.+ +|+.|.+...|++|++..+.++..+++.. ..-..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~Pav~~Al~~vn~~~~ilp~y~L~~~~~ds~C~~~~g~k~~fdll~~~p~k~m 116 (865)
T KOG1055|consen 37 PSRCPRRIVGIGPLGPGSGGWPGGQACLPAVELALEDVNSRSDILPGYRLKLIHHDSECDPGQGTKALYDLLYNGPNKLM 116 (865)
T ss_pred CCCCCceeeeeecCccccCCCcCcccccHHHHHHHHHhhccccccCCcEEEEEeccccCCccccHHHHHHHHHcCCchhe
Confidence 344568888888887 2457788999999999999999 89999999999999999999999999863 33456
Q ss_pred EEcCCChHHHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCC
Q 008863 101 IAGMETWEETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVY 179 (550)
Q Consensus 101 iiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~ 179 (550)
++|+ |++.+..++.-+..++.-+++++++ +|. .++..||++||++|+..........++++|+|++++.++....-
T Consensus 117 ll~G-Cs~v~~~iaea~~~w~l~~lsy~~s--sp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~w~rvgt~~q~e~~ 193 (865)
T KOG1055|consen 117 LLGG-CSSVTTLIAEAAKMWNLIVLSYGAS--SPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFGWKRVATLQQTEEV 193 (865)
T ss_pred eccC-CCCcchHHHhhccccceeeecccCC--CccccchhhcchhhhcCCccccCCcceeeechhcCcceeeeeeeehhh
Confidence 6677 9999999999999999999999999 787 67889999999999999999999999999999999999998763
Q ss_pred CCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 180 GGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 180 g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
- ....+.+...+.+.+ ++++....+. .|....++.+++.++|+|+- ..+...++.+++++...+|.+
T Consensus 194 f--~~~~~dl~~~~~~~~-ieiv~~qsf~---------~dp~~~vk~l~~~D~RiI~g-~f~~~~Arkv~C~~Y~~~myg 260 (865)
T KOG1055|consen 194 F--SSTLNDLEARLKEAG-IEIVFRQSFS---------SDPADSVKNLKRQDARIIVG-LFYETEARKVFCEAYKERLYG 260 (865)
T ss_pred h--cchHHHHHHhhhccc-cEEEEeeccc---------cCHHHHHhhccccchhheec-cchHhhhhHHHHhhchhhccc
Confidence 3 567889999999999 9888766543 36677889999999999999 999999999999999999999
Q ss_pred CCEEEEEeccchhh-----cccCC---hhHHhhcCceEEEEeecCC-------CChhHHHHHHHHHHHhhccCCCCCCCC
Q 008863 260 KDSVWIVTNTVANA-----LDSLN---TTVISSMEGTLGIKSYYSD-------DSSPYKEFSALFRRNFTSEYPEEDHFH 324 (550)
Q Consensus 260 ~~~~~i~~~~~~~~-----~~~~~---~~~~~~~~g~~~~~~~~~~-------~~~~~~~f~~~~~~~~~~~~~~~~~~~ 324 (550)
..|+|+...+.... .+... .+...+++|.+++.....+ .+....+|+..+.+...... ....
T Consensus 261 ~ky~w~~~g~y~d~w~ev~~~~~~ctveem~~A~eg~~s~e~~pl~~~~~~tisg~T~~~~l~~~~~~r~~~~---~~~~ 337 (865)
T KOG1055|consen 261 RKYVWFLIGWYADNWWEITHPSENCTVEEMTEAAEGHITTEFVMLSPANITTISGMTAQEFLEELTKYRKRHP---EETG 337 (865)
T ss_pred ceeEEEEEEeeccchhhccCchhhhhHHHHHHHHhhheeeeeeccccccceeeccchhHHHHHHHHhhhcccc---cccc
Confidence 99999987653321 11111 2345567777765543211 12345556655544332111 1233
Q ss_pred CCchhhHHhHHHHHHHHHHHhhccC---------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEE
Q 008863 325 PSIHALRAHDSIKIITEAIGRLNYN---------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVN 389 (550)
Q Consensus 325 ~~~~~~~~yDav~~~a~Al~~~~~~---------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~ 389 (550)
......++|||+|++|.|++++... ..-.+.+.+++.+++|.|++|.+.|.+ |+|. .-..|.+
T Consensus 338 ~~~~~~~ayd~Iwa~ala~n~t~e~l~~~~~~l~~f~y~~k~i~d~i~eamn~tsF~GvsG~V~F~~-geR~-a~t~ieQ 415 (865)
T KOG1055|consen 338 GFQEAPLAYDAIWALALALNKTMEGLGRSHVRLEDFNYNNKTIADQIYEAMNSTSFEGVSGHVVFSN-GERM-ALTLIEQ 415 (865)
T ss_pred CcccCchHHHHHHHHHHHHHHHHhcCCccceeccccchhhhHHHHHHHHHhhcccccccccceEecc-hhhH-HHHHHHH
Confidence 4567889999999999999987542 123567999999999999999999998 8885 7778889
Q ss_pred eeCCeeeEEEEEeCCCC
Q 008863 390 VVGKKYKELDFWLPNFG 406 (550)
Q Consensus 390 ~~~~~~~~vG~w~~~~g 406 (550)
+++++++++|.|+...+
T Consensus 416 ~qdg~y~k~g~Yds~~D 432 (865)
T KOG1055|consen 416 FQDGKYKKIGYYDSTKD 432 (865)
T ss_pred HhCCceEeecccccccc
Confidence 99999999999997555
|
|
| >cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-27 Score=229.98 Aligned_cols=326 Identities=14% Similarity=0.135 Sum_probs=253.0
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|||+++|++ +..|.....|+++|++++|+.+ +|+++++++.|+++++..+.+.+.+++.+++|.+|+|+.++...
T Consensus 1 ~IGv~~p~sG~~a~~g~~~~~g~~~a~~~~N~~Ggi~G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~~~ 80 (341)
T cd06341 1 KIGLLYPDTGVAAVSFPGARAGADAAAGYANAAGGIAGRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGAGG 80 (341)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCcCCceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEecccccch
Confidence 699999998 4678899999999999999988 58999999999999999999999999987799999999887766
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l 189 (550)
..+ +.+...++|+|++.+. ++.... .++.|++.+++..+..++++++...+.+++++++.++. || +.....+
T Consensus 81 ~~~-~~~~~~~ip~v~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~i~~~~~~~g--~~~~~~~ 153 (341)
T cd06341 81 SAL-PYLAGAGIPVIGGAGT--SAWELT--SPNSFPFSGGTPASLTTWGDFAKDQGGTRAVALVTALSAAV--SAAAALL 153 (341)
T ss_pred hHH-HHHhhcCCceecCCCC--Cchhhc--CCCeEEecCCCcchhHHHHHHHHHcCCcEEEEEEeCCcHHH--HHHHHHH
Confidence 655 8888999999998876 444332 47788999999999999999999888999999987765 88 8899999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| +++.....++.. ..|+...++++++.++|+|++ ......+..++++++++|+..+.. +....
T Consensus 154 ~~~~~~~G-~~v~~~~~~~~~------~~d~~~~~~~i~~~~pdaV~~-~~~~~~a~~~~~~~~~~G~~~~~~--~~~~~ 223 (341)
T cd06341 154 ARSLAAAG-VSVAGIVVITAT------APDPTPQAQQAAAAGADAIIT-VLDAAVCASVLKAVRAAGLTPKVV--LSGTC 223 (341)
T ss_pred HHHHHHcC-CccccccccCCC------CCCHHHHHHHHHhcCCCEEEE-ecChHHHHHHHHHHHHcCCCCCEE--EecCC
Confidence 99999999 888776555543 368899999999999999999 888889999999999999977522 22112
Q ss_pred ch-hhcccCChhHHhhcCceEEEEeecCC--CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 270 VA-NALDSLNTTVISSMEGTLGIKSYYSD--DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 270 ~~-~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
.. .... ...+..+|++....+.+. ..|..+.|.+.++ +|..++ +..++.++..+||+++++++|++++
T Consensus 224 ~~~~~~~----~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~----~~~~~~~~~~~yda~~~~~~a~~~a 294 (341)
T cd06341 224 YDPALLA----APGPALAGVYIAVFYRPFESGTPAVALYLAAMA-RYAPQL----DPPEQGFALIGYIAADLFLRGLSGA 294 (341)
T ss_pred CCHHHHH----hcCcccCceEEEeeeccccCCCHHHHHHHHHHH-HhCCCC----CCCcchHHHHHHHHHHHHHHHHHhc
Confidence 21 1111 122457787776665543 4577777776443 444333 3467888999999999999999999
Q ss_pred ccCCCCHHH-HHHHHHhCcccccce---eEEEeCCCCCCCCceEEE
Q 008863 347 NYNISSPEM-LLRQMLSSDFSGLSG---KIRFKDGELLNADTLRIV 388 (550)
Q Consensus 347 ~~~~~~~~~-l~~~l~~~~~~G~tG---~i~f~~~g~~~~~~~~i~ 388 (550)
+.. .+++. ++++|++++.....| ++.+..++.+...-+.++
T Consensus 295 g~~-~~~~~~v~~al~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 339 (341)
T cd06341 295 GGC-PTRASQFLRALRAVTDYDAGGLTPPCDGKAGPGRPSTCYSFV 339 (341)
T ss_pred CCC-CChHHHHHHHhhcCCCCCCCCcccCccCccCCCCCchhhhhe
Confidence 874 46777 999999986654434 344445555543334333
|
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. |
| >TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-27 Score=226.31 Aligned_cols=299 Identities=13% Similarity=0.122 Sum_probs=224.8
Q ss_pred chhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEE
Q 008863 48 GKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPIL 125 (550)
Q Consensus 48 g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~i 125 (550)
+....+|+++|+++||..| .|++|+++..|. ++|..+.+.+.+|+. ++|.+|+|+.+|..+.++.+++.+.++|+|
T Consensus 10 ~~~~~~ga~lAveeiNaaGGv~G~~ielv~~D~-~~p~~a~~~a~~Li~-~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i 87 (347)
T TIGR03863 10 EDRGLDGARLAIEDNNTTGRFLGQTFTLDEVAV-RTPEDLVAALKALLA-QGVRFFVLDLPAAALLALADAAKAKGALLF 87 (347)
T ss_pred cchHHHHHHHHHHHHHhhCCcCCceEEEEEccC-CCHHHHHHHHHHHHH-CCCCEEEecCChHHHHHHHHHHHhCCcEEE
Confidence 4678899999999999887 588999998875 789999999999996 689999999999999999999999999999
Q ss_pred eccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEE
Q 008863 126 SFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSR 204 (550)
Q Consensus 126 s~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~ 204 (550)
+++++ ++.++ ..+++|+||+.|++..++.++++++...+.+++++|+.+++|| ..+.+.+++.+++.| ++|+..
T Consensus 88 ~~~a~--~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~kkvaii~~~~~~g--~~~~~~~~~~~~~~G-~~vv~~ 162 (347)
T TIGR03863 88 NAGAP--DDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWRRILLIQGPLPAD--ALYADAFRRSAKRFG-AKIVAE 162 (347)
T ss_pred eCCCC--ChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCCEEEEEeCCCccc--HHHHHHHHHHHHHCC-CEEEEe
Confidence 99887 66654 4567999999999999999999999877999999999999999 999999999999999 999988
Q ss_pred eecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhh
Q 008863 205 LVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISS 284 (550)
Q Consensus 205 ~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 284 (550)
+.++... ....+|+.......+.+++|+|++ .....+....+... .+. .. ..+.
T Consensus 163 ~~~~~~~--~~~~~d~s~~~~~~~~s~pDvv~~-~~~~~~~~~~~~~~--~~~-~~--~~~g------------------ 216 (347)
T TIGR03863 163 RPFTFSG--DPRRTDQSEVPLFTQGADYDVVVV-ADEAGEFARYLPYA--TWL-PR--PVAG------------------ 216 (347)
T ss_pred EEeccCC--chhhhhcccCceeecCCCCCEEEE-ecchhhHhhhcccc--ccc-cc--cccc------------------
Confidence 8776532 001234442222233479999998 65443321111000 000 00 0000
Q ss_pred cCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccCCCCHHHHHHHHHhCc
Q 008863 285 MEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSD 364 (550)
Q Consensus 285 ~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~l~~~l~~~~ 364 (550)
..|......+.....+..++|.++|+++| +..|+..++.+||++++++.|++++++. ++.+++++|++.+
T Consensus 217 ~~G~~~~~~~~~~~~~~~~~f~~~f~~~~--------g~~p~~~~a~aY~av~~~a~Ai~~AGs~--d~~aV~~aL~~~~ 286 (347)
T TIGR03863 217 SAGLVPTAWHRAWERWGATQLQSRFEKLA--------GRPMTELDYAAWLAVRAVGEAVTRTRSA--DPATLRDYLLSDE 286 (347)
T ss_pred ccCccccccCCcccchhHHHHHHHHHHHh--------CCCCChHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHcCCC
Confidence 11221111111222366788999999887 3456777889999999999999999987 9999999999987
Q ss_pred c--cccce-eEEEeC-CCCCCCCceEEEEe
Q 008863 365 F--SGLSG-KIRFKD-GELLNADTLRIVNV 390 (550)
Q Consensus 365 ~--~G~tG-~i~f~~-~g~~~~~~~~i~~~ 390 (550)
+ .+..| +++|++ +++.. ..+.+.+.
T Consensus 287 ~~~~~~~g~~~~~R~~Dhq~~-~~~~~~~~ 315 (347)
T TIGR03863 287 FELAGFKGRPLSFRPWDGQLR-QPVLLVHP 315 (347)
T ss_pred ceecccCCCcceeeCCCcccc-cceEeccc
Confidence 7 47777 799986 55543 44444433
|
Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U. |
| >cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=222.92 Aligned_cols=284 Identities=24% Similarity=0.380 Sum_probs=228.3
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||+++|.+ +..+.....|+++|++++|+.+ .|++++++++|+++++..+.+.+.+++.+++|.+|||+.++..+
T Consensus 1 ~IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~~~ 80 (299)
T cd04509 1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGVA 80 (299)
T ss_pred CeeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcHHH
Confidence 599999998 4577889999999999999986 58999999999999999999999999986699999999998888
Q ss_pred HHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.+++.++...+||+|++.+. .+. .++..+|++|++.|+...++..+++++.+++|+++++++.++.++ ....+.+
T Consensus 81 ~~~~~~~~~~~iP~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv~~~~~~~--~~~~~~~ 156 (299)
T cd04509 81 LAVAPVAEALKIPLISPGAT--APGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDDSYG--RGLLEAF 156 (299)
T ss_pred HHHHHHHhhCCceEEeccCC--CcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEEecCchHH--HHHHHHH
Confidence 88999999999999999877 444 334567999999999999999999999999999999999998888 8889999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
++.+++.| +++.....++.. .+++...++++++.++++|++ ++....+..+++++++.|+. +++.|+..+.
T Consensus 157 ~~~~~~~g-~~i~~~~~~~~~------~~~~~~~~~~l~~~~~~~v~~-~~~~~~~~~~~~~~~~~g~~-~~~~~i~~~~ 227 (299)
T cd04509 157 KAAFKKKG-GTVVGEEYYPLG------TTDFTSLLQKLKAAKPDVIVL-CGSGEDAATILKQAAEAGLT-GGYPILGITL 227 (299)
T ss_pred HHHHHHcC-CEEEEEecCCCC------CccHHHHHHHHHhcCCCEEEE-cccchHHHHHHHHHHHcCCC-CCCcEEeccc
Confidence 99999999 988766555442 257888999998888999999 88889999999999999998 6789998877
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHH
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKI 338 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~ 338 (550)
+...... ....+..+|.++...+..........+...+...+...+ +..++.+++++||++++
T Consensus 228 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~yda~~~ 290 (299)
T cd04509 228 GLSDVLL--EAGGEAAEGVLTGTPYFPGDPPPESFFFVRAAAREKKKY----EDQPDYFAALAYDAVLL 290 (299)
T ss_pred ccCHHHH--HHhHHhhcCcEEeeccCCCCCChHHHHHHhHHHHHHHHh----CCCCChhhhhhcceeee
Confidence 6543221 122355778887776655432222233221122222211 45678899999999887
|
This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th |
| >KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=246.13 Aligned_cols=282 Identities=26% Similarity=0.472 Sum_probs=221.6
Q ss_pred HHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCC-hhHHhhcCceEEEEeecCCCChhH
Q 008863 224 LKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLN-TTVISSMEGTLGIKSYYSDDSSPY 302 (550)
Q Consensus 224 l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~ 302 (550)
+..++....+++++ .+.+..+..++.++.++||+...|+|+.++......+... ....+..++.+....+.+.. ...
T Consensus 6 ~~~~~~~~~~~~v~-~~~~~~~~~~~~~a~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s-~~~ 83 (656)
T KOG1052|consen 6 LLKLKAMRTRVFVL-HMFPILALAIFSQAEELGMMQFGYVWILTNLLTDALDLDELYSLIDVMNGVLGLRGHIPRS-ELL 83 (656)
T ss_pred HHHhhccCceEEEE-eCCHHHHHHHHHHHHHhCccccCeEEEEEecchhhhcccccccchhheeeEEeeccCCCcc-HHH
Confidence 34444557888888 8889999999999999999999999999998665555433 23344455666665544433 455
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc------------CCCCHHHHHHHHHhCccc---c
Q 008863 303 KEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY------------NISSPEMLLRQMLSSDFS---G 367 (550)
Q Consensus 303 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~------------~~~~~~~l~~~l~~~~~~---G 367 (550)
+.|..++... +......+..+||++++++.|++.... .|.++..+.+.++..... |
T Consensus 84 ~~~~~~~~~~---------~~~~~~~~~~~~D~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (656)
T KOG1052|consen 84 QNFVTRWQTS---------NVELLVYALWAYDAIQALARAVESLLNIGNLSLSCGRNNSWLDALGVFNFGKKLLVVNLSG 154 (656)
T ss_pred HHHHHHHhhc---------cccccchhhHHHHHHHHHHHHHHHhhcCCCCceecCCCCcccchhHHHHHHHhhhhhcccc
Confidence 5555555443 124567789999999999999988762 155677788887776544 4
Q ss_pred cceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCccccCCCCcCCcCCCccccCCCCccccCCCCCCCCCCccc
Q 008863 368 LSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWA 447 (550)
Q Consensus 368 ~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~wp~~~~~~~p~~~~ 447 (550)
.+|.+.++.++.+....++++++.+.+.+.+|.|++..| ..+.||+... ..|+++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~i~n~~~~~~~~ig~W~~~~~-----------------------~~i~~~~~~~-~~~~~~~ 210 (656)
T KOG1052|consen 155 VTGQFQFFRGGLLEYFKYEILNLNGSGERRIGYWYPRGG-----------------------ENISWPGKDY-FVPKGWF 210 (656)
T ss_pred ceeEEEecCCCccccceEEEEEecCcCceeEEEecCCCC-----------------------ceeeccCCcc-cCcCCcc
Confidence 566777777888989999999999888888999998655 1388999988 8999999
Q ss_pred cCCCCCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec-------CCChHHH
Q 008863 448 MPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH-------DGVYDDL 520 (550)
Q Consensus 448 ~~~~~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~-------~g~w~Gm 520 (550)
.++.+++++|.++.+ +||++..++. .... ++++++||||||++++++.|+|+|++..+++ +|+||||
T Consensus 211 ~~~~~~~l~v~~~~~---~P~~~~~~~~-~~~~--~~~~~~G~~idll~~l~~~l~f~~~~~~~~~~~g~~~~~g~~~g~ 284 (656)
T KOG1052|consen 211 FPTNGKPLRVGVVTE---PPFVDLVEDL-AILN--GNDRIEGFEIDLLQALAKRLNFSYEIIFVPDGSGSRDPNGNWDGL 284 (656)
T ss_pred ccCCCceEEEEEecc---CCceeeeecc-cccC--CCCccceEEehHHHHHHHhCCCceEEEEcCCCCCCCCCCCChhHH
Confidence 998999999999977 7888887763 1111 5779999999999999999999966666655 3799999
Q ss_pred HHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 521 INGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 521 i~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
+|+|++|+||++ +++||+++|+++|.
T Consensus 285 v~~l~~~~advg-~~~tit~~R~~~vd 310 (656)
T KOG1052|consen 285 VGQLVDGEADVG-ADITITPERSKYVD 310 (656)
T ss_pred HHHHhcCccccc-cceEEeecccccEE
Confidence 999999999999 99999999999986
|
|
| >cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-25 Score=213.28 Aligned_cols=278 Identities=21% Similarity=0.269 Sum_probs=221.0
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
|||+++|++ +..|.....|+++|++++|+ + +|+++++++.|+++++..+.+.+.+++.+++|.+|||+.++..+
T Consensus 1 ~IG~~~~lsG~~~~~g~~~~~g~~~a~~~iN~-ggi~g~~i~l~~~d~~~~~~~a~~~~~~li~~~~v~~vig~~~s~~~ 79 (312)
T cd06333 1 KIGAILSLTGPAASLGIPEKKTLELLPDEINA-GGIGGEKVELIVLDDGSDPTKAVTNARKLIEEDKVDAIIGPSTTPAT 79 (312)
T ss_pred CeeEEeecCCcchhhCHHHHHHHHHHHHHHhc-CCcCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCeEEEECCCCCHHH
Confidence 699999999 56678899999999999999 7 78999999999999999999999999986799999999888777
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.++.+++...++|+|+++.. ++... ...+|+|++.|++...+..+++++...||+++++++.++.++ ....+.++
T Consensus 80 ~~~~~~~~~~~vP~v~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vail~~~~~~~--~~~~~~~~ 154 (312)
T cd06333 80 MAVAPVAEEAKTPMISLAPA--AAIVE-PKRKWVFKTPQNDRLMAEAILADMKKRGVKTVAFIGFSDAYG--ESGLKELK 154 (312)
T ss_pred HHHHHHHHhcCCCEEEccCC--ccccC-CCCCcEEEcCCCcHHHHHHHHHHHHHcCCCEEEEEecCcHHH--HHHHHHHH
Confidence 77888899999999998876 33332 345789999999999999999999999999999999988888 88889999
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
+.+++.| +++.....++.. ..++...+.++++.++++|++ ......+..+++++++.|+..+ . +.+...
T Consensus 155 ~~~~~~G-~~v~~~~~~~~~------~~d~~~~~~~l~~~~pdaIi~-~~~~~~~~~~~~~l~~~g~~~p--~-~~~~~~ 223 (312)
T cd06333 155 ALAPKYG-IEVVADERYGRT------DTSVTAQLLKIRAARPDAVLI-WGSGTPAALPAKNLRERGYKGP--I-YQTHGV 223 (312)
T ss_pred HHHHHcC-CEEEEEEeeCCC------CcCHHHHHHHHHhCCCCEEEE-ecCCcHHHHHHHHHHHcCCCCC--E-EeecCc
Confidence 9999999 998776666543 257888888888888999998 7777778889999999998764 3 333322
Q ss_pred hhhcccCChhHHhhcCceEEEEee------cCC---CChhHHHHHHHHHHHhhccCCCCCCCC-CCchhhHHhHHHHHHH
Q 008863 271 ANALDSLNTTVISSMEGTLGIKSY------YSD---DSSPYKEFSALFRRNFTSEYPEEDHFH-PSIHALRAHDSIKIIT 340 (550)
Q Consensus 271 ~~~~~~~~~~~~~~~~g~~~~~~~------~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~yDav~~~a 340 (550)
.. .... ....+..+|++....+ .+. ..+..++|.++|+++|. .. |..+++.+||++++++
T Consensus 224 ~~-~~~~-~~~g~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~f~~~~~~~~g--------~~~~~~~~~~~Yda~~~~~ 293 (312)
T cd06333 224 AS-PDFL-RLAGKAAEGAILPAGPVLVADQLPDSDPQKKVALDFVKAYEAKYG--------AGSVSTFGGHAYDALLLLA 293 (312)
T ss_pred Cc-HHHH-HHhhHhhcCcEeecccceeeeeCCCCCcchHHHHHHHHHHHHHhC--------CCCCCchhHHHHHHHHHHH
Confidence 21 0111 1122456776654321 121 13568888888888873 33 7788999999999998
|
This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however. |
| >cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=200.78 Aligned_cols=279 Identities=24% Similarity=0.372 Sum_probs=225.7
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+||+++|.+ +..+.....|++.|++++|+.+ +|++|++.++|+++++..+.+.++++++ +++.+|+||.++..+
T Consensus 1 ~ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~gg~~g~~v~~~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~~~~~ 79 (298)
T cd06268 1 KIGVLLPLSGPLAALGEPVRNGAELAVEEINAAGGILGRKIELVVEDTQGDPEAAAAAARELVD-DGVDAVIGPLSSGVA 79 (298)
T ss_pred CeeeeecCcCchhhcChhHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHh-CCceEEEcCCcchhH
Confidence 589999998 4678899999999999999987 5899999999999999999999999997 599999999988888
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC-CeEEEEEEEcCCCCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN-WRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~-w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
..+..++...+||+|++.+. .+......++++|++.|++..++.++++++...+ |+++++++.++.++ ....+.+
T Consensus 80 ~~~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~--~~~~~~~ 155 (298)
T cd06268 80 LAAAPVAEEAGVPLISPGAT--SPALTGKGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDYAYG--RGLAAAF 155 (298)
T ss_pred HhhHHHHHhCCCcEEccCCC--CcccccCCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEcCCchh--HHHHHHH
Confidence 88899999999999999877 4443324578999999999999999999998887 99999999998888 8899999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
.+.+++.| +++.....++.. ..++...++++++.++++|++ .+....+..+++++++.|+. ..|+..+.
T Consensus 156 ~~~~~~~g-~~i~~~~~~~~~------~~~~~~~~~~l~~~~~~~vi~-~~~~~~~~~~~~~~~~~g~~---~~~~~~~~ 224 (298)
T cd06268 156 REALKKLG-GEVVAEETYPPG------ATDFSPLIAKLKAAGPDAVFL-AGYGGDAALFLKQAREAGLK---VPIVGGDG 224 (298)
T ss_pred HHHHHHcC-CEEEEEeccCCC------CccHHHHHHHHHhcCCCEEEE-ccccchHHHHHHHHHHcCCC---CcEEecCc
Confidence 99999999 888776655442 257888999999888999998 88878999999999999983 36777666
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCCC-ChhHHHHH-HHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHH
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSDD-SSPYKEFS-ALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 340 (550)
+...... ....+..+|.+...++.... .+....|. ..|++.+ +..++.++..+||++++++
T Consensus 225 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~y~~~~~~~ 287 (298)
T cd06268 225 AAAPALL--ELAGDAAEGVLGTTPYAPDDDDPAAAAFFQKAFKAKY--------GRPPDSYAAAAYDAVRLLA 287 (298)
T ss_pred cCCHHHH--HhhhHhhCCcEEeccCCCCCCChhhhHHHHHHHHHHh--------CCCcccchHHHHHHHHHHc
Confidence 5432111 12234567877776654432 23444454 5566555 4567888999999999987
|
Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC |
| >cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=187.00 Aligned_cols=324 Identities=15% Similarity=0.116 Sum_probs=231.8
Q ss_pred chhHHHHHHHHHHHHhcCC--CCcEEEE----------EEecCCC--CHHHHHHHHHHhhhc-CCeEEEEcCCChHHHHH
Q 008863 48 GKQAITAMKIAVQNFNSDS--RNHKLSL----------QIRDHNR--DPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (550)
Q Consensus 48 g~~~~~a~~~Av~~iN~~~--~~~~l~~----------~~~d~~~--~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (550)
-.....|++.|++.+++.. .|..+.+ ...+..| +.-++++...+|... +.-.+++||.|..++.+
T Consensus 17 ~~~v~~av~~a~~~~~~~~~~~g~~f~~~a~~~~~~~~~y~~~~C~sstceg~~~l~~l~~~~~~gcv~lGP~CtYat~~ 96 (380)
T cd06369 17 LKFVKEAVEEAIEIVAERLAEAGLNVTVNANFEGFNTSLYRSRGCRSSTCEGVELLKKLSVTGRLGCVLLGPSCTYATFQ 96 (380)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCceEEEEEeeeccccceeccCCCCcccchHHHHHHHHHhcCccCcEEEcCccceehhh
Confidence 3567789999999998765 5776666 4444333 345677777777653 55779999999999999
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH------HcCCeEEEEEEEcCCCCCc-chh
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR------KYNWRRVAAIYEDNVYGGD-SGK 185 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~------~~~w~~v~ii~~~~~~g~~-~~~ 185 (550)
++.+...+++|+||.++- .-.-+.. +++-|+.|+...++..+.++.+ +++|+++. ||.+++--.+ --.
T Consensus 97 ~~~~~~~~~~P~ISaGsf--glscd~k--~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~~ay-vyk~~~~~edCf~~ 171 (380)
T cd06369 97 MVDDEFNLSLPIISAGSF--GLSCDYK--ENLTRLLPPARKISDFFVDFWKEKNFPKKPKWETAY-VYKKQENTEDCFWY 171 (380)
T ss_pred hhhhhhcCCCceEecccc--ccCCCch--hhhhhcCchHHHHHHHHHHHHhcccccCCCCCceeE-EEcCCCCccceeeE
Confidence 999999999999998876 3333322 4789999999999999999994 89998655 8877631000 113
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
...+......-+ ..+.+...++ ..+++...++++++ .+|+||+ +++++..+.++.+ ++..++|++|
T Consensus 172 i~al~a~~~~f~-~~~~~~~~l~-------~~~~~~~il~~~~~-~sRIiIm-CG~p~~ir~lm~~----~~~~gDYVf~ 237 (380)
T cd06369 172 INALEAGVAYFS-SALKFKELLR-------TEEELQKLLTDKNR-KSNVIIM-CGTPEDIVNLKGD----RAVAEDIVII 237 (380)
T ss_pred hHhhhhhhhhhh-hcccceeeec-------CchhHHHHHHHhcc-CccEEEE-eCCHHHHHHHHhc----CccCCCEEEE
Confidence 455555555444 4444444333 23678888888765 8899999 9999999998886 5555689999
Q ss_pred EeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCC-CchhhHHhHHHHHHHHHHH
Q 008863 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHP-SIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~yDav~~~a~Al~ 344 (550)
..+.+..... .+....++++.++.++...+.. +.+.+ . .+ .+... ..+++..||||.++++||+
T Consensus 238 ~IDlF~~sy~-~d~~a~~amqsVLvIT~~~p~~-~~~~~-------~----~~--fn~~l~~~~aa~fyDaVLLYa~AL~ 302 (380)
T cd06369 238 LIDLFNDVYY-ENTTSPPYMRNVLVLTLPPRNS-TNNSS-------F----TT--DNSLLKDDYVAAYHDGVLLFGHVLK 302 (380)
T ss_pred EEecccchhc-cCcchHHHHhceEEEecCCCCC-ccccc-------C----CC--CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9887754321 2223446678888776543322 22211 0 00 01122 2778899999999999999
Q ss_pred hhccC--CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee--CCeeeEEEEEeCCCC
Q 008863 345 RLNYN--ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV--GKKYKELDFWLPNFG 406 (550)
Q Consensus 345 ~~~~~--~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~--~~~~~~vG~w~~~~g 406 (550)
+.... ..++..+.+.|++.+|+|++|++++|++|+|. ..|.++.+. .++++.||.|+....
T Consensus 303 EtL~~G~~~~~~~I~~~m~NrTF~GitG~V~IDeNGDRd-~dfsLl~ms~~tg~y~vV~~y~t~~n 367 (380)
T cd06369 303 KFLESQEGVQTFSFINEFRNISFEGAGGPYTLDEYGDRD-VNFTLLYTSTDTSKYKVLFEFDTSTN 367 (380)
T ss_pred HHHHhCCCCCcHHHHHHHhCcceecCCCceEeCCCCCcc-CceEEEEeeCCCCCeEEEEEEECCCC
Confidence 98654 12348899999999999999999999999995 899998875 488999999997333
|
Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion. |
| >PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-21 Score=134.67 Aligned_cols=57 Identities=30% Similarity=0.629 Sum_probs=44.0
Q ss_pred ccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec--------CCChHHHHHhhhc
Q 008863 467 KFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH--------DGVYDDLINGVYD 526 (550)
Q Consensus 467 pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~--------~g~w~Gmi~el~~ 526 (550)
||||.+++.+. .. |++||||||||||++||+.|+|+|++.++++ ||+||||||||++
T Consensus 1 Pfvm~~~~~~~-~~--g~~~~eGyciDll~~la~~l~F~y~i~~~~Dg~yG~~~~~g~W~GmiGeli~ 65 (65)
T PF10613_consen 1 PFVMLKEDGEN-LT--GNDRYEGYCIDLLEELAEELNFTYEIYLVPDGKYGSKNPNGSWNGMIGELIR 65 (65)
T ss_dssp TTBEE-TTSSG-SB--GGGGEESHHHHHHHHHHHHHT-EEEEEE-TTS--EEBETTSEBEHHHHHHHT
T ss_pred CeEEEecCCcc-cC--CCccEEEEHHHHHHHHHHHcCCeEEEEECCCCCCcCcCCCCcCcCHHHHhcC
Confidence 79999888322 22 7999999999999999999999944444443 6999999999985
|
It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A .... |
| >cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=131.29 Aligned_cols=216 Identities=22% Similarity=0.372 Sum_probs=172.5
Q ss_pred EEEEEEecC--CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
+||+++|.+ ...+.....+++.+++++ |..+++.++++.+++....+.+.+++. +++.+++++.++.....+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~ii~~~~~~~~~~~ 74 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEI-----GRGLEVILADSQSDPERALEALRDLIQ-QGVDGIIGPPSSSSALAV 74 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHh-----CCceEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEecCCCHHHHHH
Confidence 589999987 455667778888888886 467888889999999888888888886 589999998887666657
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC-CCCCcchhHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-VYGGDSGKLALLAEA 192 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~-~~g~~~~~~~~l~~~ 192 (550)
...+...++|+|.+... .+... .+++++++.|+....+.++++++.+++|+++++++.+. .++ ....+.+++.
T Consensus 75 ~~~~~~~~ip~v~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~--~~~~~~~~~~ 148 (269)
T cd01391 75 VELAAAAGIPVVSLDAT--APDLT--GYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYG--RERLEGFKAA 148 (269)
T ss_pred HHHHHHcCCcEEEecCC--CCccC--CCceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEecCCcchh--hHHHHHHHHH
Confidence 78889999999998876 33333 56889999999999999999999999999999999887 565 7788899999
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccch
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (550)
+++.+ .++......... ...++....+.+++. ++++|++ .++ ..+..+++++.+.|+.++++.|+..+.+.
T Consensus 149 ~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~i~~-~~~-~~a~~~~~~~~~~g~~~~~~~ii~~~~~~ 220 (269)
T cd01391 149 LKKAG-IEVVAIEYGDLD-----TEKGFQALLQLLKAAPKPDAIFA-CND-EMAAGALKAAREAGLTPGDISIIGFDGSP 220 (269)
T ss_pred HHhcC-cEEEeccccCCC-----ccccHHHHHHHHhcCCCCCEEEE-cCc-hHHHHHHHHHHHcCCCCCCCEEEeccccc
Confidence 99988 776544333221 224667777777776 7888888 666 88899999999999985567777766654
|
Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con |
| >PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=125.80 Aligned_cols=309 Identities=13% Similarity=0.170 Sum_probs=162.8
Q ss_pred CcEEEEEEEecCCc---cchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~~---~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+-+|++++|+++. .|.....||..|. +.. .+...++.++|+..++. .....+.+. +|+.+||||.....
T Consensus 218 ~~~~IavLLPlsG~~a~~~~aI~~G~~aA~---~~~-~~~~~~l~~~Dt~~~~~--~~~~~~a~~-~ga~~ViGPL~k~~ 290 (536)
T PF04348_consen 218 PPQRIAVLLPLSGRLARAGQAIRDGFLAAY---YAD-ADSRPELRFYDTNADSA--DALYQQAVA-DGADFVIGPLLKSN 290 (536)
T ss_dssp ----EEEEE--SSTTHHHHHHHHHHHHHHH-------TT--S-EEEEETTTS-H--HHHHHHHHH-TT--EEE---SHHH
T ss_pred CccCEEEEeCCCCchhHHHHHHHHHHHHhh---ccc-ccCCCceEEecCCCCCH--HHHHHHHHH-cCCCEEEcCCCHHH
Confidence 45689999999953 4567777887777 111 24567888899877633 333455554 79999999999988
Q ss_pred HHHHHHhhcc--CCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 110 TAVVAEIASR--VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 110 ~~~v~~~~~~--~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
...++..-.. ..||++..... +.. ... +.+|.+.-+.+..++.+++.+..-|+++..||+.++++| ....+
T Consensus 291 V~~l~~~~~~~~~~vp~LaLN~~--~~~-~~~--~~l~~f~LspEdEA~q~A~~a~~~g~~~alvl~p~~~~g--~R~~~ 363 (536)
T PF04348_consen 291 VEALAQLPQLQAQPVPVLALNQP--DNS-QAP--PNLYQFGLSPEDEARQAAQKAFQDGYRRALVLAPQNAWG--QRMAE 363 (536)
T ss_dssp HHHHHH-GG-GGTT-EEEES-----TT-------TTEEE----HHHHHHHHHHHHHHTT--S-EEEEESSHHH--HHHHH
T ss_pred HHHHHhcCcccccCCceeeccCC--Ccc-cCc--cceEEEeCCcHHHHHHHHHHHHhcCCCCEEEEcCCChHH--HHHHH
Confidence 8877765432 48999998876 333 212 334444555578899999999999999999999999999 99999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.|.+.....| ..+.....+.. ..++...++.-.+.+.|.|++ ...+.+++.+--...-. .. .+-..+.+
T Consensus 364 aF~~~W~~~g-g~~~~~~~~~~-------~~~~~~~i~~r~r~d~D~ifl-~a~~~~ar~ikP~l~~~-~a-~~lPvyat 432 (536)
T PF04348_consen 364 AFNQQWQALG-GQVAEVSYYGS-------PADLQAAIQPRRRQDIDAIFL-VANPEQARLIKPQLDFH-FA-GDLPVYAT 432 (536)
T ss_dssp HHHHHHHHHH-SS--EEEEESS-------TTHHHHHHHHS--TT--EEEE----HHHHHHHHHHHTT--T--TT-EEEE-
T ss_pred HHHHHHHHcC-CCceeeEecCC-------HHHHHHHHhhcCCCCCCEEEE-eCCHHHHHHHhhhcccc-cC-CCCCEEEe
Confidence 9999999988 77755555543 257787887666668999999 88888888776665543 11 11223333
Q ss_pred cc-chhhcccCChhHHhhcCceEEEEee-cCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHh
Q 008863 268 NT-VANALDSLNTTVISSMEGTLGIKSY-YSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (550)
Q Consensus 268 ~~-~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (550)
+. .... .++.....++|+.+.... .-...+ .....+...+... ........+++|||..++.+--
T Consensus 433 S~~~~g~---~~~~~~~dL~gv~f~d~Pwll~~~~---~~~~~~~~~~~~~-----~~~~~RL~AlG~DA~~L~~~l~-- 499 (536)
T PF04348_consen 433 SRSYSGS---PNPSQDRDLNGVRFSDMPWLLDPNS---PLRQQLAALWPNA-----SNSLQRLYALGIDAYRLAPRLP-- 499 (536)
T ss_dssp GGG--HH---T-HHHHHHTTT-EEEE-GGGG---S---HHHHHHH-HHTTT------HHHHHHHHHHHHHHHHHHTHH--
T ss_pred ccccCCC---CCcchhhhhcCCEEeccccccCCCc---hHHHHHHhhccCC-----ccHHHHHHHHHHHHHHHHHHHH--
Confidence 32 2221 223344678888766542 222111 1222333333210 1112234677888877763321
Q ss_pred hccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEe
Q 008863 346 LNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV 390 (550)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~ 390 (550)
-++.+....+.|.||.+++|++|.. ...+.-.++
T Consensus 500 ----------~l~~~~~~~~~G~TG~L~~~~~g~i-~R~l~wa~f 533 (536)
T PF04348_consen 500 ----------QLRQFPGYRLDGLTGQLSLDEDGRI-ERQLSWAQF 533 (536)
T ss_dssp ----------HHHHSTT--EEETTEEEEE-TT-BE-EEE-EEEEE
T ss_pred ----------HHhhCCCCcccCCceeEEECCCCeE-EEeecceee
Confidence 1122234578999999999988754 234433333
|
; PDB: 3CKM_A. |
| >cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-07 Score=85.86 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=136.0
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||+++|.+ .........+++.+.++. | +++.+.+...++....+.+.+++. .++.++++...........
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~-----g--~~l~~~~~~~~~~~~~~~~~~~~~-~~~d~ii~~~~~~~~~~~~ 72 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAA-----G--YQVLLANSQNDAEKQLSALENLIA-RGVDGIIIAPSDLTAPTIV 72 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHc-----C--CeEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCCCcchhHH
Confidence 589999886 444556667777777663 4 455667777787777778888886 5888888755444333356
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLAEA 192 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l~~~ 192 (550)
..+...++|+|..... .+. .++++++.+++...+..+++++...+-++++++..+.. ++ ....+.+++.
T Consensus 73 ~~l~~~~ip~v~~~~~--~~~-----~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~--~~~~~~~~~~ 143 (264)
T cd01537 73 KLARKAGIPVVLVDRD--IPD-----GDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTA--RERVAGFKDA 143 (264)
T ss_pred HHhhhcCCCEEEeccC--CCC-----CcccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcH--HHHHHHHHHH
Confidence 7778899999998766 322 24566788888899999999998888999999987654 44 5667888888
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+++.+...+........ +..+....++++.+.+ +++++. . +...+..+++++.+.|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~i~~-~-~~~~a~~~~~~~~~~g~~ 203 (264)
T cd01537 144 LKEAGPIEIVLVQEGDW------DAEKGYQAAEELLTAHPDPTAIFA-A-NDDMALGALRALREAGLR 203 (264)
T ss_pred HHHcCCcChhhhccCCC------CHHHHHHHHHHHHhcCCCCCEEEE-c-CcHHHHHHHHHHHHhCCC
Confidence 87654012111111111 3356667777777665 566665 4 445667789999999985
|
Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem |
| >cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.6e-07 Score=83.64 Aligned_cols=205 Identities=15% Similarity=0.149 Sum_probs=136.2
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||++.|.. .........+++.+.++. |+.+ .+.+...++....+...+++. .++.+|+.......... .
T Consensus 1 ~i~~v~~~~~~~~~~~~~~g~~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~~~~-~~~d~iii~~~~~~~~~-~ 71 (264)
T cd06267 1 TIGVIVPDISNPFFAELLRGIEEAAREA-----GYSV--LLCNSDEDPEKEREALELLLS-RRVDGIILAPSRLDDEL-L 71 (264)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHc-----CCEE--EEEcCCCCHHHHHHHHHHHHH-cCcCEEEEecCCcchHH-H
Confidence 489999885 444455556666666553 4444 456777788788888888887 58888886544444444 5
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLAEA 192 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l~~~ 192 (550)
..+...++|+|..... .+. +.+..+.++....++.+++++...|.+++++++.+.. ++ ....+.+++.
T Consensus 72 ~~~~~~~ipvv~~~~~--~~~------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~--~~r~~g~~~~ 141 (264)
T cd06267 72 EELAALGIPVVLVDRP--LDG------LGVDSVGIDNRAGAYLAVEHLIELGHRRIAFIGGPPDLSTA--RERLEGYREA 141 (264)
T ss_pred HHHHHcCCCEEEeccc--ccC------CCCCEEeeccHHHHHHHHHHHHHCCCceEEEecCCCccchH--HHHHHHHHHH
Confidence 6678899999998765 221 3445567788888899999998889999999987654 44 5667788888
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+++.+ ..+.......... ...+....++++.+.. .+.|+. .+...+..+++++++.|+..++.+.+.
T Consensus 142 ~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~i~~--~~~~~a~~~~~al~~~g~~~~~~i~i~ 210 (264)
T cd06267 142 LEEAG-IPLDEELIVEGDF----SEESGYEAARELLASGERPTAIFA--ANDLMAIGALRALRELGLRVPEDVSVV 210 (264)
T ss_pred HHHcC-CCCCcceEEeccc----chhhHHHHHHHHHhcCCCCcEEEE--cCcHHHHHHHHHHHHhCCCCCCceEEE
Confidence 88876 5332222222111 2245566777776654 566665 455667788999999998533333333
|
Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain. |
| >cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-06 Score=79.91 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=133.0
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcC-CChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~~~~~v 113 (550)
+||+++|.. .........+++.+.++. | +++.+.++..++....+.+.+++.+ ++.+||.. .........
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~-----g--~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgvi~~~~~~~~~~~~ 72 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKEL-----G--VELIVLDAQNDVSKQIQQIEDLIAQ-GVDGIIISPVDSAALTPA 72 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhc-----C--ceEEEECCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCchhHHHH
Confidence 589999875 444556677777777763 3 4455567767887777888888874 88888754 333333334
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC--CCCcchhHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKLALL 189 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~~~l 189 (550)
...+...++|+|..... .+. .+.+..+.+++...+..+++++... +-+++++|+.+.. ++ ....+.+
T Consensus 73 ~~~l~~~~ip~V~~~~~--~~~-----~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~--~~r~~gf 143 (267)
T cd01536 73 LKKANAAGIPVVTVDSD--IDG-----GNRLAYVGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNA--QERVKGF 143 (267)
T ss_pred HHHHHHCCCcEEEecCC--CCc-----cceeEEEecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchH--HHHHHHH
Confidence 45566789999998765 221 1334567788888889999998776 8899999987653 55 6677888
Q ss_pred HHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 190 AEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 190 ~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
++.+++. + .++........ ...+..+.++++.+.. +++|+. ++...+..+++++++.|+.
T Consensus 144 ~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~--~~d~~a~~~~~~l~~~g~~ 206 (267)
T cd01536 144 RDALKEYPD-IEIVAVQDGNW------DREKALQAMEDLLQANPDIDAIFA--ANDSMALGAVAALKAAGRK 206 (267)
T ss_pred HHHHHhCCC-cEEEEEecCCC------cHHHHHHHHHHHHHhCCCccEEEE--ecCCchHHHHHHHHhcCCC
Confidence 8988887 5 55543221111 2245566777776554 444444 4556777799999999986
|
Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2 |
| >COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-06 Score=75.70 Aligned_cols=201 Identities=13% Similarity=0.150 Sum_probs=137.6
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCc-EEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNH-KLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~-~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
+.++||+....+...-.....|++-|+.+. |+ .+++.....++|+..+.+.++++.. ++..+|++..+ ..+.
T Consensus 29 ~~~~VaI~~~veHpaLd~~~~G~~~aLk~~-----G~~n~~i~~~na~~~~~~a~~iarql~~-~~~dviv~i~t-p~Aq 101 (322)
T COG2984 29 DQITVAITQFVEHPALDAAREGVKEALKDA-----GYKNVKIDYQNAQGDLGTAAQIARQLVG-DKPDVIVAIAT-PAAQ 101 (322)
T ss_pred cceeEEEEEeecchhHHHHHHHHHHHHHhc-----CccCeEEEeecCCCChHHHHHHHHHhhc-CCCcEEEecCC-HHHH
Confidence 467788888887655566677777777775 44 7788888999999999999999987 56677776444 3444
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCC----CCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC-CCCcch
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSR----RWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGGDSG 184 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~-~g~~~~ 184 (550)
.+.+-. .++|++-.+.+ ++...+. .-|----+.-++..-...-.+++++. +.++++++|..++ .. ..
T Consensus 102 ~~~s~~--~~iPVV~aavt--d~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns--~~ 175 (322)
T COG2984 102 ALVSAT--KTIPVVFAAVT--DPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANS--VS 175 (322)
T ss_pred HHHHhc--CCCCEEEEccC--chhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCccc--HH
Confidence 443332 34999998887 6652211 11222234556666666777777763 8899999998875 55 77
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH---HHHHHHHHHHHcCC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD---MTIHLFTEANRMGL 257 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~---~~~~il~~a~~~g~ 257 (550)
..+.++..+++.| +++.... ++. ..|.....+.+. .++|+|++ .++.. ....++..+.+.+.
T Consensus 176 l~eelk~~A~~~G-l~vve~~-v~~-------~ndi~~a~~~l~-g~~d~i~~-p~dn~i~s~~~~l~~~a~~~ki 240 (322)
T COG2984 176 LVEELKKEARKAG-LEVVEAA-VTS-------VNDIPRAVQALL-GKVDVIYI-PTDNLIVSAIESLLQVANKAKI 240 (322)
T ss_pred HHHHHHHHHHHCC-CEEEEEe-cCc-------ccccHHHHHHhc-CCCcEEEE-ecchHHHHHHHHHHHHHHHhCC
Confidence 8899999999999 9886543 332 235555666665 58899998 66553 33456666666654
|
|
| >COG3107 LppC Putative lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-06 Score=84.49 Aligned_cols=312 Identities=10% Similarity=0.103 Sum_probs=183.8
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+-+|++++|+++ ..+.....||..|.. -+...++-..++.++|+...+..++ ...+.++|+..|+||.-...
T Consensus 256 ~~skiALLLPLtG~~a~~a~~IqdGF~aA~~-~~~~~~~~~~~~~i~dT~~~~l~~i---~aqaqq~G~~~VVGPLlK~n 331 (604)
T COG3107 256 SPSKIALLLPLTGQAAVFARTIQDGFLAAKN-APATQTAQVAELKIYDTSAQPLDAI---LAQAQQDGADFVVGPLLKPN 331 (604)
T ss_pred CchheeEEeccCChhHHHHHHHHHHHHHhcc-CcccCCccccceeeccCCcccHHHH---HHHHHhcCCcEEeccccchh
Confidence 4678999999994 456677788877765 1222223336788889877665544 33444589999999999888
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.+.+..-- ...||++....+ +.. . ..+.+....-+.++.++..++.+-..|.+...++...+++| +...+.|
T Consensus 332 Ve~L~~~~-q~~i~vLALN~~--~n~-r--~~~~~cyfaLSPEDEa~~AA~~l~~qG~R~plvlvPr~~lG--~Rv~~AF 403 (604)
T COG3107 332 VEALLASN-QQPIPVLALNQP--ENS-R--NPAQLCYFALSPEDEARDAANHLWDQGKRNPLVLVPRNDLG--DRVANAF 403 (604)
T ss_pred HHHHHhCc-CCCCceeeecCC--ccc-c--CcccceeeecChhHHHHHHHHHHHHccccCceEEecchHHH--HHHHHHH
Confidence 87765432 278999988866 222 2 22344444555567889999999999999999999999999 9999999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHH-----------------------HHhhcCC-CeEEEEEcCCHHHH
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGEL-----------------------KKVQDKQ-SRVFIVLQASLDMT 245 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l-----------------------~~i~~~~-~~~ii~~~~~~~~~ 245 (550)
.....+.| ...+....+... ..+...+ ..+.+.. .|.|++ ...+.++
T Consensus 404 ~~~Wq~~g-g~~v~~~~fg~~-------~~l~~~i~~~a~ir~~~~p~~~~~~~g~~~~p~~~~d~iDaVyi-vAtp~el 474 (604)
T COG3107 404 NQEWQKLG-GGTVLQQKFGST-------SELRQGINDGAGIRLTGLPADLTTTNGLQTPPLDDQDTIDAVYI-VATPSEL 474 (604)
T ss_pred HHHHHHhc-CCchhHhhcCcH-------HHHHhhcccccceeecCCccchhcccCCCCCCcccccccceEEE-EecchhH
Confidence 99999988 533332222211 1111111 1122223 788888 7778777
Q ss_pred HHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEe-ec-CCCChhHHHHHHHHHHHhhccCCCCCCC
Q 008863 246 IHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKS-YY-SDDSSPYKEFSALFRRNFTSEYPEEDHF 323 (550)
Q Consensus 246 ~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 323 (550)
..|--...-.+.....-.|..+.... ...+++....++|+.+-.. +. ....|..++....|..
T Consensus 475 ~~IKP~ia~~~~~~~~p~yaSSr~~~---gT~~P~~~~~m~GiqysdiP~l~~~~~p~~qq~a~~~p~------------ 539 (604)
T COG3107 475 ALIKPMIAMANGSDSPPLYASSRSSQ---GTNGPDFRLEMEGIQYSDIPWLAQPNPPLMQQAAAAWPN------------ 539 (604)
T ss_pred hHHhhHHHhhcCCCCcceeeeccccc---cCCCccHHHhccCccccCCchhcCCCchHHHHHHHhcCC------------
Confidence 76655555433322211222222221 2223444566777653221 11 1222444333333221
Q ss_pred CCCchhhHHhHHHHHHHHHHHhhccCCCCHHHHHHHHHh------CcccccceeEEEeCCCCCCCCceEEEEeeCCeeeE
Q 008863 324 HPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLS------SDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKE 397 (550)
Q Consensus 324 ~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~l~~~l~~------~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~ 397 (550)
-|..+.+++.++ |.+.|..++.+ -.+.|+||.++.|+++... ..+.=.+++++..++
T Consensus 540 --------~~sl~RLyAmGv--------DAwrLan~f~elrqV~G~~i~G~TG~Lsad~~c~I~-R~l~Waqy~~G~vvP 602 (604)
T COG3107 540 --------DYSLARLYAMGV--------DAWRLANHFSELRQVPGYQIDGLTGTLSADPDCVIE-RKLSWAQYQQGQVVP 602 (604)
T ss_pred --------chHHHHHHHhcc--------hHHHHHHHhHHhhcCCCcccccccceeecCCCceEe-ecchHHHhcCCCeee
Confidence 144444554444 33444444333 3578999999999887643 333333344444443
|
|
| >cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-05 Score=76.80 Aligned_cols=200 Identities=11% Similarity=0.070 Sum_probs=127.3
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEE-EcCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVI-AGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~ai-iG~~~s~~~~~v 113 (550)
|||++.|.. ...-.....+++.+.++. |+.+.+...+...++....+...+++. .++.+| +.|..+....+.
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~ 74 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKL-----GVSVDIQAAPSEGDQQGQLSIAENMIN-KGYKGLLFSPISDVNLVPA 74 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHh-----CCeEEEEccCCCCCHHHHHHHHHHHHH-hCCCEEEECCCChHHhHHH
Confidence 589999853 323334455666666653 677777666777777767777777876 478774 555544433344
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+. ...+ .+.+++...+..+++++... |.++++++....+........+.+.+
T Consensus 75 ~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~ 146 (275)
T cd06320 75 VERAKKKGIPVVNVNDK--LIP---NATA---FVGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTE 146 (275)
T ss_pred HHHHHHCCCeEEEECCC--CCC---ccce---EEecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHH
Confidence 55667889999987654 111 1112 35778888899999998765 88999999864332111445677889
Q ss_pred HHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 192 ALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 192 ~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+++. | +.+.... .... ...+....++++.+.. ++.|+ +.+...+..+++.+++.|+.
T Consensus 147 ~~~~~~~-~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~~~~~al~~~g~~ 207 (275)
T cd06320 147 AIKKASG-IEVVASQ-PADW-----DREKAYDVATTILQRNPDLKAIY--CNNDTMALGVVEAVKNAGKQ 207 (275)
T ss_pred HHhhCCC-cEEEEec-CCCc-----cHHHHHHHHHHHHHhCCCccEEE--ECCchhHHHHHHHHHhcCCC
Confidence 99988 8 7664322 1111 2234455666665443 44443 45666777889999999985
|
Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. |
| >cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-06 Score=78.31 Aligned_cols=202 Identities=14% Similarity=0.085 Sum_probs=132.9
Q ss_pred EEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh-HHHHHH
Q 008863 36 KIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW-EETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s-~~~~~v 113 (550)
|||+++|... .+-.....+++.+.++.-. .|+.+++.+.|+..++....+...+++. .++.+||..... ......
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~--~g~~~~l~i~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~~~~~~~~~~ 77 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKK--AGLISEFIVTSADGDVAQQIADIRNLIA-QGVDAIIINPASPTALNPV 77 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhc--cCCeeEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhhHHH
Confidence 6899997652 2223445556555554311 2677888889998898888888888887 599988874433 323334
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcC--CCCCcchhHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDN--VYGGDSGKLALL 189 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~--~~g~~~~~~~~l 189 (550)
...+...++|+|..... .+ . +.+.++.+++...+..+++++... +-++++++.... ..+ ....+.+
T Consensus 78 l~~~~~~~iPvv~~~~~--~~---~---~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~--~~R~~g~ 147 (272)
T cd06300 78 IEEACEAGIPVVSFDGT--VT---T---PCAYNVNEDQAEFGKQGAEWLVKELGGKGNVLVVRGLAGHPVD--EDRYAGA 147 (272)
T ss_pred HHHHHHCCCeEEEEecC--CC---C---CceeEecCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCcch--HHHHHHH
Confidence 45667789999998754 11 1 346678899999999999998765 888999997532 233 5566778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
++.+.+.+.+.+... ..... +.++..+.+.++.+.. +++|+. .+.. +..+++.+++.|+..
T Consensus 148 ~~a~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~~i~~--~~d~-A~g~~~al~~~g~~~ 210 (272)
T cd06300 148 KEVLKEYPGIKIVGE--VYGDW----DQAVAQKAVADFLASNPDVDGIWT--QGGD-AVGAVQAFEQAGRDI 210 (272)
T ss_pred HHHHHHCCCcEEEee--cCCCC----CHHHHHHHHHHHHHhCCCcCEEEe--cCCC-cHHHHHHHHHcCCCC
Confidence 888877641443321 11111 2345566777776554 455554 3444 889999999999843
|
Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail. |
| >cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.2e-06 Score=78.74 Aligned_cols=201 Identities=13% Similarity=0.163 Sum_probs=132.7
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
|||++.+.+...-.....+++-.+++.+-. .|.++++.+.|+..++......+.++++ .++.+||+..++. ....
T Consensus 1 ~igv~~~~~~~~~~~~~~gi~~~~~~~g~~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~-~~vd~iI~~~~~~-~~~~-- 75 (281)
T cd06325 1 KVGILQLVEHPALDAARKGFKDGLKEAGYK-EGKNVKIDYQNAQGDQSNLPTIARKFVA-DKPDLIVAIATPA-AQAA-- 75 (281)
T ss_pred CeEEecCCCCcchHHHHHHHHHHHHHhCcc-CCceEEEEEecCCCCHHHHHHHHHHHHh-cCCCEEEEcCcHH-HHHH--
Confidence 589999866444445556665555554332 3678999999999999888888888887 5899999864432 2222
Q ss_pred hhccCCccEEeccCCCCCCcc----cCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC-CCCcchhHHH
Q 008863 116 IASRVQVPILSFAAPAVTPLS----MSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGGDSGKLAL 188 (550)
Q Consensus 116 ~~~~~~iP~is~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~-~g~~~~~~~~ 188 (550)
.+...++|+|..+.. .+.. +....+....+..++......+++++... +.+++++++++.. ++ ....+.
T Consensus 76 ~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~--~~r~~g 151 (281)
T cd06325 76 ANATKDIPIVFTAVT--DPVGAGLVKSLEKPGGNVTGVSDLVPVETQLELLKKLLPDAKTVGVLYNPSEANS--VVQVKE 151 (281)
T ss_pred HHcCCCCCEEEEecC--CccccccccccccCCCceeCeecccchHHHHHHHHHHCCCCcEEEEEeCCCCccH--HHHHHH
Confidence 255679999988754 2321 11111111223344556677888888765 9999999986543 55 667788
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
+++.+++.| +++.... . . ...++...++++.+ .+++|+. .. ...+..+++++.+.|+
T Consensus 152 ~~~~~~~~g-~~~~~~~-~-~------~~~~~~~~~~~~~~-~~dai~~-~~-d~~a~~~~~~~~~~~~ 208 (281)
T cd06325 152 LKKAAAKLG-IEVVEAT-V-S------SSNDVQQAAQSLAG-KVDAIYV-PT-DNTVASAMEAVVKVAN 208 (281)
T ss_pred HHHHHHhCC-CEEEEEe-c-C------CHHHHHHHHHHhcc-cCCEEEE-cC-chhHHhHHHHHHHHHH
Confidence 999999998 8765432 1 1 23566777777765 3577776 44 4466678888888775
|
This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally. |
| >PRK10797 glutamate and aspartate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-07 Score=88.77 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHH----hCCC-CCCeEEEecCCChHHHHHhhhcc
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVD----HLNY-DLPYEFVPHDGVYDDLINGVYDK 527 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~----~l~f-~~~~~~~~~~g~w~Gmi~el~~~ 527 (550)
.+|+|++. ..++||.+...+. ...||+|||+++|++ .||. .+++++++. .|..++-.|..|
T Consensus 40 g~L~Vg~~--~~~pP~~f~~~~g----------~~~G~didl~~~ia~~l~~~lg~~~~~~~~v~~--~~~~~i~~L~~G 105 (302)
T PRK10797 40 GVIVVGHR--ESSVPFSYYDNQQ----------KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI--TSQNRIPLLQNG 105 (302)
T ss_pred CeEEEEEc--CCCCCcceECCCC----------CEeeecHHHHHHHHHHHHHhhCCCCceEEEEEc--ChHhHHHHHHCC
Confidence 45677654 3578898763221 588999998888776 5553 344788886 488999999999
Q ss_pred cccEEeeceeeeeeeeeEEEe
Q 008863 528 VNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 528 ~ad~a~~~~ti~~~r~~~~~~ 548 (550)
++||+++.+++|.+|++.+..
T Consensus 106 ~~Di~~~~~~~t~eR~~~~~f 126 (302)
T PRK10797 106 TFDFECGSTTNNLERQKQAAF 126 (302)
T ss_pred CccEEecCCccCcchhhccee
Confidence 999999999999999988753
|
|
| >PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-07 Score=85.54 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=64.4
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
+.+++++ ...++||.+..++. .+.||++|+++++++.+|.+ +++++. .|+.++..|.+|++|++
T Consensus 26 ~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~vdi~~~ia~~lg~~--i~~~~~--pw~~~~~~l~~g~~D~~ 89 (259)
T PRK15437 26 QNIRIGT--DPTYAPFESKNSQG----------ELVGFDIDLAKELCKRINTQ--CTFVEN--PLDALIPSLKAKKIDAI 89 (259)
T ss_pred CeEEEEe--CCCCCCcceeCCCC----------CEEeeeHHHHHHHHHHcCCc--eEEEeC--CHHHHHHHHHCCCCCEE
Confidence 4556664 23468998764432 68999999999999999988 777765 49999999999999999
Q ss_pred eeceeeeeeeeeEE
Q 008863 533 YHDKLLFKKKKRLC 546 (550)
Q Consensus 533 ~~~~ti~~~r~~~~ 546 (550)
+++++.|.+|++.+
T Consensus 90 ~~~~~~t~eR~~~~ 103 (259)
T PRK15437 90 MSSLSITEKRQQEI 103 (259)
T ss_pred EecCCCCHHHhhhc
Confidence 99999999998854
|
|
| >cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-05 Score=72.65 Aligned_cols=196 Identities=12% Similarity=0.141 Sum_probs=122.7
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||+++|.. ...-.....+++.+.++. |+.+.+ .++..++....+...+++. .++.+||............
T Consensus 1 ~igvv~~~~~~~~~~~~~~~i~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~~ 72 (266)
T cd06282 1 TVGVVLPSLANPVFAECVQGIQEEARAA-----GYSLLL--ATTDYDAEREADAVETLLR-QRVDGLILTVADAATSPAL 72 (266)
T ss_pred CeEEEeCCCCcchHHHHHHHHHHHHHHC-----CCEEEE--eeCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCCchHHH
Confidence 378899754 222334445555555442 455554 5566677766677777776 5888888532222222345
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC---CCCCcchhHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN---VYGGDSGKLALLAE 191 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~---~~g~~~~~~~~l~~ 191 (550)
..+...++|+|..... .+ ...++ +..+....+..+++++...|.++++++..+. +++ ....+.+.+
T Consensus 73 ~~~~~~~ipvV~~~~~--~~----~~~~~---v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~--~~r~~gf~~ 141 (266)
T cd06282 73 DLLDAERVPYVLAYND--PQ----PGRPS---VSVDNRAAARDVAQALAALGHRRIAMLAGRLAASDRA--RQRYAGYRA 141 (266)
T ss_pred HHHhhCCCCEEEEecc--CC----CCCCE---EeeCcHHHHHHHHHHHHHcCcccEEEeccccccCchH--HHHHHHHHH
Confidence 6677889999987654 21 22343 3467788899999999888999999997532 244 556788889
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhh-cC-CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DK-QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~-~~-~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+........ ...+....+.++. +. .++.|+. ++...+..+++++++.|+..
T Consensus 142 ~l~~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~~ 202 (266)
T cd06282 142 AMRAAG-LAPLPPVEIPF------NTAALPSALLALLTAHPAPTAIFC--SNDLLALAVIRALRRLGLRV 202 (266)
T ss_pred HHHHcC-CCCCccccCCC------cHHHHHHHHHHHhcCCCCCCEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 998888 65432221111 1223334455443 33 4566665 56666778999999999853
|
This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding |
| >PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.1e-07 Score=84.41 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=63.9
Q ss_pred eEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEee
Q 008863 455 MRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYH 534 (550)
Q Consensus 455 ~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~ 534 (550)
|||+.. ..++||.+..++. ...|+++||++++++.+|++ +++++. .|+.++..|.+|++|++++
T Consensus 1 l~V~~~--~~~~P~~~~~~~~----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~~~ 64 (225)
T PF00497_consen 1 LRVGVD--EDYPPFSYIDEDG----------EPSGIDVDLLRAIAKRLGIK--IEFVPM--PWSRLLEMLENGKADIIIG 64 (225)
T ss_dssp EEEEEE--SEBTTTBEEETTS----------EEESHHHHHHHHHHHHHTCE--EEEEEE--EGGGHHHHHHTTSSSEEES
T ss_pred CEEEEc--CCCCCeEEECCCC----------CEEEEhHHHHHHHHhhcccc--cceeec--ccccccccccccccccccc
Confidence 355551 2568999987643 68999999999999999999 777774 7999999999999999999
Q ss_pred ceeeeeeeeeEEE
Q 008863 535 DKLLFKKKKRLCL 547 (550)
Q Consensus 535 ~~ti~~~r~~~~~ 547 (550)
++++|.+|++.+.
T Consensus 65 ~~~~~~~r~~~~~ 77 (225)
T PF00497_consen 65 GLSITPERAKKFD 77 (225)
T ss_dssp SEB-BHHHHTTEE
T ss_pred ccccccccccccc
Confidence 9999999987543
|
The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A .... |
| >cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00014 Score=68.72 Aligned_cols=196 Identities=11% Similarity=0.087 Sum_probs=122.1
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEE-EEcCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKV-IAGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~a-iiG~~~s~~~~~v 113 (550)
.||+++|.. .........++..+.++. |+.+ .+.++..++....+...+++. .++.+ |+++..+......
T Consensus 1 ~I~vv~~~~~~~~~~~~~~~i~~~~~~~-----g~~v--~~~~~~~~~~~~~~~~~~~~~-~~~dgii~~~~~~~~~~~~ 72 (268)
T cd06323 1 TIGLSVSTLNNPFFVTLKDGAQKEAKEL-----GYEL--TVLDAQNDAAKQLNDIEDLIT-RGVDAIIINPTDSDAVVPA 72 (268)
T ss_pred CeeEecccccCHHHHHHHHHHHHHHHHc-----CceE--EecCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChHHHHHH
Confidence 378888753 334455666776666663 4555 456667788777777778776 57887 5555544433334
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC--CCCcchhHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKLALL 189 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~~~l 189 (550)
...+...++|+|..... .+. .+.+-.+..+....+..++++|... +-+++++++.+.. +. ....+.+
T Consensus 73 l~~l~~~~ipvv~~~~~--~~~-----~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~--~~r~~g~ 143 (268)
T cd06323 73 VKAANEAGIPVFTIDRE--ANG-----GEVVSQIASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAA--RERGKGF 143 (268)
T ss_pred HHHHHHCCCcEEEEccC--CCC-----CceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccH--HHHHHHH
Confidence 44456789999998764 221 1223346677777788889988776 7899999986432 34 5667888
Q ss_pred HHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 190 AEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 190 ~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
++.+++. + +.+........ +..+....+.++.+. .++.|+ +.+...+..+++++++.|+
T Consensus 144 ~~~l~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~~~~~~l~~~g~ 205 (268)
T cd06323 144 HEVVDKYPG-LKVVASQPADF------DRAKGLNVMENILQAHPDIKGVF--AQNDEMALGAIEALKAAGK 205 (268)
T ss_pred HHHHHhCCC-cEEEecccCCC------CHHHHHHHHHHHHHHCCCcCEEE--EcCCchHHHHHHHHHHcCC
Confidence 8888884 7 66542211111 222333445555433 345544 4555666678999999998
|
Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability. |
| >PRK15007 putative ABC transporter arginine-biding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.4e-07 Score=82.39 Aligned_cols=80 Identities=15% Similarity=0.262 Sum_probs=65.3
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
..++|+.+. ..++||.+...+. .++||++|++++|++.+|++ ++++.. .|+.++..|..|++|+
T Consensus 20 ~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~lg~~--~~~~~~--~~~~~~~~l~~g~~D~ 83 (243)
T PRK15007 20 AETIRFATE--ASYPPFESIDANN----------QIVGFDVDLAQALCKEIDAT--CTFSNQ--AFDSLIPSLKFRRVEA 83 (243)
T ss_pred CCcEEEEeC--CCCCCceeeCCCC----------CEEeeeHHHHHHHHHHhCCc--EEEEeC--CHHHHhHHHhCCCcCE
Confidence 356777763 3568998764322 78999999999999999999 666654 5999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++.++.|.+|++-+.
T Consensus 84 ~~~~~~~~~~r~~~~~ 99 (243)
T PRK15007 84 VMAGMDITPEREKQVL 99 (243)
T ss_pred EEEcCccCHHHhcccc
Confidence 9999999999987653
|
|
| >PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9e-07 Score=83.38 Aligned_cols=80 Identities=20% Similarity=0.261 Sum_probs=65.7
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|... ..++||.+..++. .+.||.+||++++++.+|.+ +++++. .|+.++..|..|++|+
T Consensus 25 ~~~l~v~~~--~~~pPf~~~~~~g----------~~~G~~vdl~~~ia~~lg~~--~~~~~~--~~~~~~~~l~~g~~Di 88 (260)
T PRK15010 25 PETVRIGTD--TTYAPFSSKDAKG----------DFVGFDIDLGNEMCKRMQVK--CTWVAS--DFDALIPSLKAKKIDA 88 (260)
T ss_pred CCeEEEEec--CCcCCceeECCCC----------CEEeeeHHHHHHHHHHhCCc--eEEEeC--CHHHHHHHHHCCCCCE
Confidence 355677653 3478998864332 68899999999999999999 777664 5999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++++++|.+|++.+.
T Consensus 89 ~~~~~~~t~eR~~~~~ 104 (260)
T PRK15010 89 IISSLSITDKRQQEIA 104 (260)
T ss_pred EEecCcCCHHHHhhcc
Confidence 9999999999997654
|
|
| >PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=81.66 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=65.5
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC-CCCCCeEEEecCCChHHHHHhhhccccc
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKVNY 530 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l-~f~~~~~~~~~~g~w~Gmi~el~~~~ad 530 (550)
...++|++. ..++||.+.+.+ +..++||++||++++++.| |-..++++++. .|+..+..|.+|++|
T Consensus 37 ~g~l~vg~~--~~~pP~~~~~~~---------~g~~~G~~vdl~~~ia~~llg~~~~~~~~~~--~~~~~~~~l~~g~~D 103 (259)
T PRK11917 37 KGQLIVGVK--NDVPHYALLDQA---------TGEIKGFEIDVAKLLAKSILGDDKKIKLVAV--NAKTRGPLLDNGSVD 103 (259)
T ss_pred CCEEEEEEC--CCCCCceeeeCC---------CCceeEeeHHHHHHHHHHhcCCCccEEEEEc--ChhhHHHHHHCCCcc
Confidence 456777765 467899875321 1268999999999999995 76655666665 477788889999999
Q ss_pred EEeeceeeeeeeeeEEE
Q 008863 531 FNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 531 ~a~~~~ti~~~r~~~~~ 547 (550)
++++.+++|.||++.+.
T Consensus 104 ~~~~~~~~t~eR~~~~~ 120 (259)
T PRK11917 104 AVIATFTITPERKRIYN 120 (259)
T ss_pred EEEecccCChhhhheee
Confidence 99999999999998765
|
|
| >cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00017 Score=68.52 Aligned_cols=198 Identities=10% Similarity=0.035 Sum_probs=120.6
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEE-EcCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVI-AGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~ai-iG~~~s~~~~~v 113 (550)
+||+++|.. ..+-.....+++.+.++. |+.+ .+.++..++....+...+++. .++.+| +++..+......
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~i~~~~~~~-----g~~~--~~~~~~~~~~~~~~~i~~~~~-~~~dgiii~~~~~~~~~~~ 72 (277)
T cd06319 1 QIAYIVSDLRIPFWQIMGRGVKSKAKAL-----GYDA--VELSAENSAKKELENLRTAID-KGVSGIIISPTNSSAAVTL 72 (277)
T ss_pred CeEEEeCCCCchHHHHHHHHHHHHHHhc-----CCeE--EEecCCCCHHHHHHHHHHHHh-cCCCEEEEcCCchhhhHHH
Confidence 488888754 222223344444444442 4444 456777788777777777776 578777 466555444455
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc------CCeEEEEEEEcC--CCCCcchh
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY------NWRRVAAIYEDN--VYGGDSGK 185 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~------~w~~v~ii~~~~--~~g~~~~~ 185 (550)
...+...++|+|..... ... ..++..+.++....+..+++++... |-++++++.... ..+ ...
T Consensus 73 l~~~~~~~ipvV~~~~~--~~~-----~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~~~--~~r 143 (277)
T cd06319 73 LKLAAQAKIPVVIADIG--AEG-----GDYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNG--QKR 143 (277)
T ss_pred HHHHHHCCCCEEEEecC--CCC-----CceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCccH--HHH
Confidence 56677889999987643 111 1234456677777777777776443 668999998543 234 566
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCC--eEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQS--RVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~--~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+.+++.+++.| ..+.... ..... +..+....++++.+..+ ++|+ +.+...+..+++++++.|+.
T Consensus 144 ~~gf~~~l~~~~-~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~ 210 (277)
T cd06319 144 TKGFKEAMKEAG-CDLAGIR-QQKDF----SYQETFDYTNDLLTANPDIRAIW--LQGSDRYQGALDAIATAGKT 210 (277)
T ss_pred HHHHHHHHHhcC-CceEeec-cCCCC----CHHHHHHHHHHHHHhCCCCCEEE--ECCCccchHHHHHHHHcCCC
Confidence 788899999988 7644221 11111 22333455556654444 4444 44555567899999999986
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00029 Score=66.15 Aligned_cols=204 Identities=17% Similarity=0.181 Sum_probs=137.8
Q ss_pred EEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHHHH
Q 008863 37 IGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAVVA 114 (550)
Q Consensus 37 IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~v~ 114 (550)
||++.+... .+......+++.+.++. |..+.+. .+...|+..-.+.+.++++ .++.+|| .|..+.......
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~-----g~~~~~~-~~~~~d~~~q~~~i~~~i~-~~~d~Iiv~~~~~~~~~~~l 73 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKEL-----GYEVEIV-FDAQNDPEEQIEQIEQAIS-QGVDGIIVSPVDPDSLAPFL 73 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHH-----TCEEEEE-EESTTTHHHHHHHHHHHHH-TTESEEEEESSSTTTTHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEEEEe-CCCCCCHHHHHHHHHHHHH-hcCCEEEecCCCHHHHHHHH
Confidence 788888773 34556778899998887 4566665 7889999888899999997 5888777 566666666667
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-CC-eEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-NW-RRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~w-~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
..+...+||+|..... +.. ..+....+.++....+..+++++... +- .+++++....++.......+.+.+.
T Consensus 74 ~~~~~~gIpvv~~d~~---~~~---~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~ 147 (257)
T PF13407_consen 74 EKAKAAGIPVVTVDSD---EAP---DSPRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDA 147 (257)
T ss_dssp HHHHHTTSEEEEESST---HHT---TSTSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHH
T ss_pred HHHhhcCceEEEEecc---ccc---cccceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHH
Confidence 7788889999996642 011 22344567788899999999998553 32 6888776554432113456777788
Q ss_pred Hhc-CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 193 LQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 193 l~~-~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+++ .+ +++......... ..+.....+.++.+.++-..|+ +++...+..+++.+++.|+.+.
T Consensus 148 l~~~~~-~~~~~~~~~~~~-----~~~~a~~~~~~~l~~~~~~~i~-~~~~~~~~g~~~al~~~g~~~~ 209 (257)
T PF13407_consen 148 LKEYPG-VEIVDEYEYTDW-----DPEDARQAIENLLQANPVDAII-ACNDGMALGAAQALQQAGRAGK 209 (257)
T ss_dssp HHHCTT-EEEEEEEEECTT-----SHHHHHHHHHHHHHHTTEEEEE-ESSHHHHHHHHHHHHHTTCTTT
T ss_pred Hhhcce-eeeeeeeeccCC-----CHHHHHHHHHHhhhcCCceEEE-eCCChHHHHHHHHHHHcCCccc
Confidence 887 45 776653222121 3345555555555444322334 6888888889999999999665
|
... |
| >PRK10653 D-ribose transporter subunit RbsB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00097 Score=64.09 Aligned_cols=200 Identities=10% Similarity=0.109 Sum_probs=120.6
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeE-EEEcCCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVK-VIAGMETWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~-aiiG~~~s~~~~ 111 (550)
.-+||+++|.. ..+-.....+++.++++. |+.+ .+.++..++....+....++. .++. +|+++..+....
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~-----G~~~--~~~~~~~d~~~~~~~~~~l~~-~~~dgiii~~~~~~~~~ 97 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKL-----GYNL--VVLDSQNNPAKELANVQDLTV-RGTKILLINPTDSDAVG 97 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHc-----CCeE--EEecCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChHHHH
Confidence 45899999753 333345556666666663 4454 446666777777777777766 4666 445665544433
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCe-EEEEEEEcCCCCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWR-RVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~-~v~ii~~~~~~g~~~~~~~~l 189 (550)
.....+...++|+|..... ... .+.+..+.++....+..+++++.. .+.+ +++++..+..........+.+
T Consensus 98 ~~l~~~~~~~ipvV~~~~~--~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~R~~gf 170 (295)
T PRK10653 98 NAVKMANQANIPVITLDRG--ATK-----GEVVSHIASDNVAGGKMAGDFIAKKLGEGAKVIQLEGIAGTSAARERGEGF 170 (295)
T ss_pred HHHHHHHHCCCCEEEEccC--CCC-----CceeeEEccChHHHHHHHHHHHHHHhCCCceEEEEEccCCCccHHHHHHHH
Confidence 4455667789999998754 111 123445677777777888888865 3543 566665432211114567889
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
++.+++.| +.+.... .... +..+....+.++.+.. +++|+ +.+...+..+++++++.|+
T Consensus 171 ~~al~~~g-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~A~g~l~al~~~G~ 231 (295)
T PRK10653 171 KQAVAAHK-FNVLASQ--PADF----DRTKGLNVMQNLLTAHPDVQAVF--AQNDEMALGALRALQTAGK 231 (295)
T ss_pred HHHHhhCC-CEEEEec--CCCC----CHHHHHHHHHHHHHhCCCcCEEE--ECCChhHHHHHHHHHHcCC
Confidence 99999998 7664221 1111 2233444555665443 44443 4556666678999999998
|
|
| >cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00012 Score=69.44 Aligned_cols=202 Identities=16% Similarity=0.145 Sum_probs=123.5
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||+++|.. ..+......|++.++++. |+.+.+...+... ......+.+++...++.+||............
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~ 73 (270)
T cd01545 1 LIGLLYDNPSPGYVSEIQLGALDACRDT-----GYQLVIEPCDSGS--PDLAERVRALLQRSRVDGVILTPPLSDNPELL 73 (270)
T ss_pred CEEEEEcCCCcccHHHHHHHHHHHHHhC-----CCeEEEEeCCCCc--hHHHHHHHHHHHHCCCCEEEEeCCCCCccHHH
Confidence 389999865 445566777887777653 6677665544322 22445566655446888888743322223444
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
..+...++|+|..... .+. ...++ +..+....+..+++++...|.++++++..+..+.......+.+.+.++
T Consensus 74 ~~~~~~~ipvv~i~~~--~~~---~~~~~---V~~d~~~~g~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~ 145 (270)
T cd01545 74 DLLDEAGVPYVRIAPG--TPD---PDSPC---VRIDDRAAAREMTRHLIDLGHRRIAFIAGPPDHRASAERLEGYRDALA 145 (270)
T ss_pred HHHHhcCCCEEEEecC--CCC---CCCCe---EEeccHHHHHHHHHHHHHCCCceEEEEeCCCCchhHHHHHHHHHHHHH
Confidence 5667789999988754 222 12233 456777888889999988899999999865543211344577888888
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+ +.+.......... ...+-...+.++.+. .++.|+. ++...+..+++++++.|...
T Consensus 146 ~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~i~~--~~d~~a~~~~~~~~~~g~~~ 205 (270)
T cd01545 146 EAG-LPLDPELVAQGDF----TFESGLEAAEALLALPDRPTAIFA--SNDDMAAGVLAVAHRRGLRV 205 (270)
T ss_pred HcC-CCCChhhEEeCCC----ChhhHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCC
Confidence 877 6542111111110 112222344554432 4566665 55677789999999999853
|
Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind |
| >cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00014 Score=68.79 Aligned_cols=197 Identities=19% Similarity=0.233 Sum_probs=123.9
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE--cCCChHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA--GMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii--G~~~s~~~~~ 112 (550)
+||+++|.. ...-.....++..++++. |+.+. +.++..++....+....+++ .++.+++ ++..+ ..
T Consensus 1 ~i~vv~p~~~~~~~~~~~~~i~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~---~~ 69 (268)
T cd06273 1 TIGAIVPTLDNAIFARVIQAFQETLAAH-----GYTLL--VASSGYDLDREYAQARKLLE-RGVDGLALIGLDHS---PA 69 (268)
T ss_pred CeEEEeCCCCCchHHHHHHHHHHHHHHC-----CCEEE--EecCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC---HH
Confidence 489999854 223344555665555553 45554 46777888877777778876 4676655 33222 23
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC---CCCCcchhHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN---VYGGDSGKLALL 189 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~---~~g~~~~~~~~l 189 (550)
....+...++|+|..... .+. ...++ +..++...+..+++++...|.+++++|.... .++ ....+.|
T Consensus 70 ~~~~l~~~~iPvv~~~~~--~~~---~~~~~---v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~--~~r~~gf 139 (268)
T cd06273 70 LLDLLARRGVPYVATWNY--SPD---SPYPC---VGFDNREAGRLAARHLIALGHRRIAMIFGPTQGNDRA--RARRAGV 139 (268)
T ss_pred HHHHHHhCCCCEEEEcCC--CCC---CCCCE---EEeChHHHHHHHHHHHHHCCCCeEEEEeccccCCccH--HHHHHHH
Confidence 334567789999997644 221 12233 5578888899999999878999999998543 233 5567888
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+++.+ +.+.....+.... ..++....+.++.+. .+++|+. ++...+..+++++++.|+..+
T Consensus 140 ~~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~~~~a~~~~~~l~~~g~~~p 205 (268)
T cd06273 140 RAALAEAG-LELPELWQVEAPY----SIADGRAALRQLLEQPPRPTAVIC--GNDVLALGALYEARRLGLSVP 205 (268)
T ss_pred HHHHHHcC-CCCCHHHeeeCCC----cHHHHHHHHHHHHcCCCCCCEEEE--cChHHHHHHHHHHHHcCCCCC
Confidence 89998887 5543222121111 223334455565543 4666665 566677788999999998543
|
This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational |
| >cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00073 Score=64.09 Aligned_cols=208 Identities=12% Similarity=0.017 Sum_probs=121.8
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcC-CChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~~~~~v 113 (550)
|||++.|.. ..+-.....+++.+.++ .|+.+.+...++..++....+....++. .++.+||-. .........
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgvii~~~~~~~~~~~ 74 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKE-----LGVKVTFQGPASETDVAGQVNLLENAIA-RGPDAILLAPTDAKALVPP 74 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHH-----cCCEEEEecCccCCCHHHHHHHHHHHHH-hCCCEEEEcCCChhhhHHH
Confidence 689999763 22222333444444443 2667666544445677777777777776 578877753 322222333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+ ... + +-.+..+....+..+++++... |.++++++....++.......+.+++
T Consensus 75 l~~~~~~~ipvV~~~~~--~~--~~~--~-~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~ 147 (273)
T cd06310 75 LKEAKDAGIPVVLIDSG--LN--SDI--A-VSFVATDNVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEGFLE 147 (273)
T ss_pred HHHHHHCCCCEEEecCC--CC--CCc--c-eEEEeeChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHHHHH
Confidence 34455689999997653 11 111 1 2235667777788888888666 89999999754433211445677888
Q ss_pred HHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 192 ALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 192 ~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
.+... + +.+... ..... +..+....+.++.+.. ++.|+ +.+...+..+++.+++.|+. ++...+.
T Consensus 148 a~~~~~~-~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~~i~--~~~d~~a~g~~~~l~~~g~~-~di~vig 215 (273)
T cd06310 148 GLKEYPG-IEIVAT--QYSDS----DYAKALDITEDLLTANPDLKGIF--GANEGSAVGAARAVRQAGKA-GKVKVVG 215 (273)
T ss_pred HHHhCCC-cEEEec--ccCCc----CHHHHHHHHHHHHHhCCCceEEE--ecCchhHHHHHHHHHhcCCC-CCeEEEE
Confidence 88887 7 665431 11111 2223334555554433 44443 46677788899999999985 4444443
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-06 Score=80.94 Aligned_cols=79 Identities=19% Similarity=0.351 Sum_probs=64.3
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
..+++|+.. ..++||... ++. .+.||.+||++++++.+|.+ +++++. .|.+++..|..|++|+
T Consensus 24 ~~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~vdl~~~ia~~lg~~--~~~~~~--~~~~~~~~l~~G~vDi 86 (247)
T PRK09495 24 DKKLVVATD--TAFVPFEFK-QGD----------KYVGFDIDLWAAIAKELKLD--YTLKPM--DFSGIIPALQTKNVDL 86 (247)
T ss_pred CCeEEEEeC--CCCCCeeec-CCC----------ceEEEeHHHHHHHHHHhCCc--eEEEeC--CHHHHHHHHhCCCcCE
Confidence 356677753 357889764 221 58899999999999999988 777765 5999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++.++.|.+|++.+.
T Consensus 87 ~~~~~~~t~~R~~~~~ 102 (247)
T PRK09495 87 ALAGITITDERKKAID 102 (247)
T ss_pred EEecCccCHHHHhhcc
Confidence 9999999999998754
|
|
| >cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0003 Score=66.75 Aligned_cols=203 Identities=15% Similarity=0.122 Sum_probs=120.3
Q ss_pred EEEEEEecC--CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHH
Q 008863 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~ 112 (550)
.||+++|.. .........+++.+.++. |+.+ .+.++..++....+....++. .++.+|+- +..+.....
T Consensus 1 ~i~vi~p~~~~~~~~~~~~~g~~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~~~ 72 (275)
T cd06317 1 TIGYTQNNVGSHSYQTTYNKAFQAAAEED-----GVEV--IVLDANGDVARQAAQVEDLIA-QKVDGIILWPTDGQAYIP 72 (275)
T ss_pred CeEEEecccCCCHHHHHHHHHHHHHHHhc-----CCEE--EEEcCCcCHHHHHHHHHHHHH-cCCCEEEEecCCccccHH
Confidence 378888863 444556667777777662 4444 456777788777777777776 57887754 443333334
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEE-EecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR-MASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
....+...++|+|..... .+ ....++++. +.+++...+...++++... +-++++++....++.......+.+
T Consensus 73 ~l~~~~~~~iPvV~~~~~--~~---~~~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~ 147 (275)
T cd06317 73 GLRKAKQAGIPVVITNSN--IS---EKGFEFIKSFTGPDDISQGERSAEAMCKALGGKGQIVVIAGQPGNGTAIERQKGF 147 (275)
T ss_pred HHHHHHHCCCcEEEeCCC--CC---CCccchhhhhccccHHHHHHHHHHHHHHHcCCCceEEEEecCCCCchHHHHHHHH
Confidence 445567889999987654 21 112233322 3455556777777777554 778999997644332114455778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
++.+++.| ..+.......... ...+....++++.+. .++.|+. ++...+..+++++++.|+.
T Consensus 148 ~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~~l~~~g~~ 212 (275)
T cd06317 148 EDELAEVC-PGVEVLDTQPADW----DREKAQVAMEALITKFGDDIDGVYA--GDDNMARGALNAAKEAGLA 212 (275)
T ss_pred HHHHHhhC-CCCEEEeccCCCC----CHHHHHHHHHHHHHhCCCCccEEEE--CCCcHHHHHHHHHHhcCCc
Confidence 88888875 3332221111110 112333344444332 3566665 4555678899999999987
|
Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-06 Score=80.10 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=64.2
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
+.++++. ...++||.+..++. +++||++|+++++++.+|.+ +++++. .|+.++..|.+|++|++
T Consensus 24 ~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~lg~~--~~~~~~--~~~~~~~~l~~G~~D~~ 87 (250)
T TIGR01096 24 GSVRIGT--ETGYPPFESKDANG----------KLVGFDVDLAKALCKRMKAK--CKFVEQ--NFDGLIPSLKAKKVDAI 87 (250)
T ss_pred CeEEEEE--CCCCCCceEECCCC----------CEEeehHHHHHHHHHHhCCe--EEEEeC--CHHHHHHHHhCCCcCEE
Confidence 4567775 23568998764322 78999999999999999988 777774 59999999999999999
Q ss_pred eeceeeeeeeeeEE
Q 008863 533 YHDKLLFKKKKRLC 546 (550)
Q Consensus 533 ~~~~ti~~~r~~~~ 546 (550)
+++++.+.+|++-+
T Consensus 88 ~~~~~~~~~r~~~~ 101 (250)
T TIGR01096 88 MATMSITPKRQKQI 101 (250)
T ss_pred EecCccCHHHhhcc
Confidence 99999999997644
|
|
| >cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00063 Score=64.46 Aligned_cols=211 Identities=13% Similarity=0.075 Sum_probs=124.2
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~v 113 (550)
+||+++|.. ..+-.....++..+.++. .| +.+.+.++..++..-.+...++++ .++.++| .+..+.....+
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~----~~--~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~ 73 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVL----GG--VELQFEDAKNDVATQLSQVENFIA-QGVDAIIVVPVDTAATAPI 73 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHc----CC--cEEEEeCCCCCHHHHHHHHHHHHH-cCCCEEEEecCchhhhHHH
Confidence 589999764 222233444555444441 13 444556777788777777777776 5788775 45444434445
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+.. .+.+..+..++...+..++++|... +-+++++|.............+.+++
T Consensus 74 ~~~l~~~~iPvv~~~~~--~~~~----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~ 147 (272)
T cd06301 74 VKAANAAGIPLVYVNRR--PENA----PKGVAYVGSDEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEE 147 (272)
T ss_pred HHHHHHCCCeEEEecCC--CCCC----CCeeEEEecChHHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHHHHH
Confidence 55678889999987654 1111 1234457788888888888988654 45699999765432111445677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+.+.+.+.+... ..... ........++++.+. .++.|+ +.+...+..+++.+++.|+.+++...+.-
T Consensus 148 ~l~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~~~~~~l~~~g~~~~di~ivg~ 217 (272)
T cd06301 148 VLAKYPDIKVVEE--QTANW----SRAEAMDLMENWLSSGGKIDAVV--ANNDEMALGAIMALKAAGKSDKDVPVAGI 217 (272)
T ss_pred HHHHCCCcEEEec--CCCCc----cHHHHHHHHHHHHHhCCCCCEEE--ECCCchHHHHHHHHHHcCCCCCCcEEEee
Confidence 8877651222211 11111 112223445554433 456554 46666777899999999987435444443
|
Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. |
| >cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00065 Score=64.46 Aligned_cols=210 Identities=12% Similarity=0.073 Sum_probs=124.5
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~v 113 (550)
+||++.|.- ..+-.....++..+.++. |+.+.+ .+...+...-.+....++. .++.+|| .+.........
T Consensus 1 ~~g~~~~~~~~~~~~~~~~~~~~~a~~~-----g~~~~~--~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~ 72 (273)
T cd06309 1 TVGFSQVGAESPWRTAETKSIKDAAEKR-----GFDLKF--ADAQQKQENQISAIRSFIA-QGVDVIILAPVVETGWDPV 72 (273)
T ss_pred CeeeccCCCCCHHHHHHHHHHHHHHHhc-----CCEEEE--eCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCccccchHH
Confidence 489999853 323334445555555543 455544 5666676666667777776 5777665 34443332334
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+.. ...+++.++.++....+..+++++... +-++++++..+..........+.+++
T Consensus 73 i~~~~~~~iPvV~~~~~--~~~~--~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~ 148 (273)
T cd06309 73 LKEAKAAGIPVILVDRG--VDVK--DDSLYVTFIGSDFVEEGRRAADWLAKATGGKGNIVELQGTVGSSVAIDRKKGFAE 148 (273)
T ss_pred HHHHHHCCCCEEEEecC--cCCc--cCcceeeEecCChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHH
Confidence 45567789999998754 2211 112456778899999999999998776 88899999865332111345677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.++..+...+... ..... ...+....++++.+. .++.|+ +.+...+..+++++++.|+..++-+.+
T Consensus 149 ~l~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~~aI~--~~~d~~a~g~~~a~~~~g~~ip~di~i 217 (273)
T cd06309 149 VIKKYPNMKIVAS--QTGDF----TRAKGKEVMEALLKAHGDDIDAVY--AHNDEMALGAIQAIKAAGKKPGKDIKI 217 (273)
T ss_pred HHHHCCCCEEeec--cCCcc----cHHHHHHHHHHHHHhCCCCccEEE--ECCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 8887631443321 11110 223334455555433 355554 455666677999999999864333333
|
Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally. |
| >cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00098 Score=63.15 Aligned_cols=199 Identities=12% Similarity=0.081 Sum_probs=126.9
Q ss_pred EEEEEEecC--CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
|||++.|.. ...-.....+++.+.++. |+.+.+ ..+.. ++....+...+++. .++.++|. +.......
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~-----g~~v~~--~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~ 72 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDL-----GVDVEY--RGPETFDVADMARLIEAAIA-AKPDGIVVTIPDPDALD 72 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHh-----CCEEEE--ECCCCCCHHHHHHHHHHHHH-hCCCEEEEeCCChHHhH
Confidence 689999864 334445667777777764 556554 34444 77767777777776 58887775 33333233
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcC--CCCCcchhHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDN--VYGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~--~~g~~~~~~~~ 188 (550)
.....+...++|+|..... .+... ..+.+..+..++...+..++++|.+ .|-++++++..+. ..+ ....+.
T Consensus 73 ~~l~~~~~~~ipvV~~~~~--~~~~~--~~~~~~~V~~d~~~~g~~~~~~l~~~~g~~~i~~i~g~~~~~~~--~~r~~g 146 (271)
T cd06312 73 PAIKRAVAAGIPVISFNAG--DPKYK--ELGALAYVGQDEYAAGEAAGERLAELKGGKNVLCVIHEPGNVTL--EDRCAG 146 (271)
T ss_pred HHHHHHHHCCCeEEEeCCC--CCccc--cccceEEeccChHHHHHHHHHHHHHhcCCCeEEEEecCCCCccH--HHHHHH
Confidence 3444556789999998754 22111 1234556788889999999999988 8999999997533 233 556788
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+++.++..+ +.+... .... +..+....++++.+. +++.|+. .+...+..+++.+++.|+.
T Consensus 147 ~~~~~~~~~-~~~~~~--~~~~-----~~~~~~~~~~~~l~~~~~~~aI~~--~~d~~a~g~~~al~~~g~~ 208 (271)
T cd06312 147 FADGLGGAG-ITEEVI--ETGA-----DPTEVASRIAAYLRANPDVDAVLT--LGAPSAAPAAKALKQAGLK 208 (271)
T ss_pred HHHHHHhcC-ceeeEe--ecCC-----CHHHHHHHHHHHHHhCCCccEEEE--eCCccchHHHHHHHhcCCC
Confidence 888888877 654321 1111 223344455555433 3565554 5566677888999999986
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >PRK10936 TMAO reductase system periplasmic protein TorT; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0049 Score=60.57 Aligned_cols=203 Identities=11% Similarity=0.009 Sum_probs=117.5
Q ss_pred CCcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHH
Q 008863 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEE 109 (550)
Q Consensus 32 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~ 109 (550)
..+-+||+++|.. ...-.....+++-+.++. |+.+.+...+...+...-.+....++. .++.+|| .|.....
T Consensus 44 r~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~-----G~~l~i~~~~~~~~~~~q~~~i~~l~~-~~vdgIIl~~~~~~~ 117 (343)
T PRK10936 44 KKAWKLCALYPHLKDSYWLSVNYGMVEEAKRL-----GVDLKVLEAGGYYNLAKQQQQLEQCVA-WGADAILLGAVTPDG 117 (343)
T ss_pred CCCeEEEEEecCCCchHHHHHHHHHHHHHHHh-----CCEEEEEcCCCCCCHHHHHHHHHHHHH-hCCCEEEEeCCChHH
Confidence 3578999999875 222334455666665553 555555432223455545555666665 5787766 3444333
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-----CCeEEEEEEEcCCCCCcch
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-----NWRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-----~w~~v~ii~~~~~~g~~~~ 184 (550)
..... .+...++|+|..... .. . .. ....+..+....+...++++... |-++++++..+........
T Consensus 118 ~~~~l-~~~~~giPvV~~~~~--~~-~--~~--~~~~V~~D~~~~g~~aa~~L~~~~~~~~g~~~i~~i~g~~~~~~~~~ 189 (343)
T PRK10936 118 LNPDL-ELQAANIPVIALVNG--ID-S--PQ--VTTRVGVSWYQMGYQAGRYLAQWHPKGSKPLNVALLPGPEGAGGSKA 189 (343)
T ss_pred hHHHH-HHHHCCCCEEEecCC--CC-C--cc--ceEEEecChHHHHHHHHHHHHHHHHhcCCCceEEEEECCCCCchHHH
Confidence 22222 456789999976433 11 1 11 12346778888888888888654 4789999975432111134
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
..+.+++.+++.| +++.... .... +.......++++.+. +++.|+. ....+..+++.+++.|+.
T Consensus 190 R~~Gf~~~l~~~~-i~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~ai~~---~d~~A~ga~~al~~~g~~ 255 (343)
T PRK10936 190 VEQGFRAAIAGSD-VRIVDIA-YGDN-----DKELQRNLLQELLERHPDIDYIAG---SAVAAEAAIGELRGRNLT 255 (343)
T ss_pred HHHHHHHHHhcCC-CEEEEee-cCCC-----cHHHHHHHHHHHHHhCCCccEEEe---CCHHHHHHHHHHHhcCCC
Confidence 5677888888888 7765421 1111 122333445555433 4566643 345677788999999984
|
|
| >cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00055 Score=64.64 Aligned_cols=200 Identities=11% Similarity=0.108 Sum_probs=121.7
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||+++|.. ..+-.....+++.+.++. |+.+ .+.++..++..-.+...+++. .++.+++...+........
T Consensus 1 ~I~vi~~~~~~~~~~~~~~g~~~~a~~~-----g~~~--~~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~ 72 (268)
T cd06289 1 TIGLVINDLTNPFFAELAAGLEEVLEEA-----GYTV--FLANSGEDVERQEQLLSTMLE-HGVAGIILCPAAGTSPDLL 72 (268)
T ss_pred CEEEEecCCCcchHHHHHHHHHHHHHHc-----CCeE--EEecCCCChHHHHHHHHHHHH-cCCCEEEEeCCCCccHHHH
Confidence 378999764 333345667777666654 4555 344566667666666667765 6888887643332222344
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLAEA 192 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l~~~ 192 (550)
..+...++|+|..... .+. ...+ .+.++....+..+++++...|-++++++..+.. .. ....+.|.+.
T Consensus 73 ~~~~~~~ipvV~~~~~--~~~---~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~--~~r~~gf~~~ 142 (268)
T cd06289 73 KRLAESGIPVVLVARE--VAG---APFD---YVGPDNAAGARLATEHLISLGHRRIAFIGGLEDSSTR--RERLAGYRAA 142 (268)
T ss_pred HHHHhcCCCEEEEecc--CCC---CCCC---EEeecchHHHHHHHHHHHHCCCCCEEEecCCccccch--HHHHHHHHHH
Confidence 5567789999987644 121 1222 356777788888899888889899999875433 33 5567888888
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+++.+ ..+.....+.... ........++++.+. ..++|+. .+...+..+++++++.|+..+
T Consensus 143 l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~i~~--~~~~~a~~~~~al~~~g~~~p 205 (268)
T cd06289 143 LAEAG-LPFDSELVVEGPP----SRQGGAEAVAQLLDLPPRPTAIVC--FNDLVAFGAMSGLRRAGLTPG 205 (268)
T ss_pred HHHcC-CCCCchhEEecCc----chhhHHHHHHHHHcCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCC
Confidence 88776 5332211111111 112233444554433 4566554 455667778999999998643
|
This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0038 Score=61.03 Aligned_cols=209 Identities=12% Similarity=0.092 Sum_probs=112.6
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
++.+||++.+.. ..+-.....+++-+.++. ++.. +.+.++..+.....+....++. .++.+||= +......
T Consensus 23 ~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~----g~~~--~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~ 95 (330)
T PRK15395 23 ADTRIGVTIYKYDDNFMSVVRKAIEKDAKAA----PDVQ--LLMNDSQNDQSKQNDQIDVLLA-KGVKALAINLVDPAAA 95 (330)
T ss_pred CCceEEEEEecCcchHHHHHHHHHHHHHHhc----CCeE--EEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeccCHHHH
Confidence 578999999743 222234444554444443 2333 3445665566555555666665 57887664 3333323
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc------------CCeEEEEEEEcCC
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY------------NWRRVAAIYEDNV 178 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~------------~w~~v~ii~~~~~ 178 (550)
......+...++|+|..... .+.......+-...+..+....+...++++... |-.++++|.....
T Consensus 96 ~~~l~~l~~~giPvV~vd~~--~~~~~~~~~~~~~~V~~D~~~ag~~a~~~l~~~~~~~~~~~~~~~g~~~i~~i~g~~~ 173 (330)
T PRK15395 96 PTVIEKARGQDVPVVFFNKE--PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWKANPAWDLNKDGKIQYVLLKGEPG 173 (330)
T ss_pred HHHHHHHHHCCCcEEEEcCC--ccccccccccceeEEccChHHHHHHHHHHHHHHHhhccccccCCCCceEEEEEecCCC
Confidence 33334566789999998764 211111111112345677777777666655432 3334455544322
Q ss_pred CCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC----CCeEEEEEcCCHHHHHHHHHHHHH
Q 008863 179 YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK----QSRVFIVLQASLDMTIHLFTEANR 254 (550)
Q Consensus 179 ~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~----~~~~ii~~~~~~~~~~~il~~a~~ 254 (550)
........+.+++.+++.| +.+.... ..... .+..+-...++++.+. .+++|+ +++...+..+++++++
T Consensus 174 ~~~~~~R~~G~~~al~~~g-~~~~~~~-~~~~~---~~~~~a~~~~~~~l~~~~~~~~~ai~--~~~d~~A~gvl~al~~ 246 (330)
T PRK15395 174 HPDAEARTTYVIKELNDKG-IKTEQLQ-LDTAM---WDTAQAKDKMDAWLSGPNANKIEVVI--ANNDAMAMGAVEALKA 246 (330)
T ss_pred CchHHHHHHHHHHHHHhcC-CCeeeee-cccCC---cCHHHHHHHHHHHHhhCcCCCeeEEE--ECCchHHHHHHHHHHh
Confidence 1101345677888888888 7654322 21111 0112333455555432 345554 4666777889999999
Q ss_pred cCC
Q 008863 255 MGL 257 (550)
Q Consensus 255 ~g~ 257 (550)
.|+
T Consensus 247 ~Gl 249 (330)
T PRK15395 247 HNK 249 (330)
T ss_pred cCC
Confidence 998
|
|
| >cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00078 Score=63.63 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=121.0
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||+++|.. ...-.....+++-+.++. |+.+.+. .+..++..-.+....++. .++.+|+-..+. ......
T Consensus 1 ~i~vi~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~--~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~-~~~~~~ 71 (268)
T cd06298 1 TVGVIIPDITNSYFAELARGIDDIATMY-----KYNIILS--NSDNDKEKELKVLNNLLA-KQVDGIIFMGGK-ISEEHR 71 (268)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHHHc-----CCeEEEE--eCCCCHHHHHHHHHHHHH-hcCCEEEEeCCC-CcHHHH
Confidence 478898764 222334445555554443 5666554 345566666666667765 578877732111 112344
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC---CCCcchhHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV---YGGDSGKLALLAE 191 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~---~g~~~~~~~~l~~ 191 (550)
..+...++|+|..... .+. ...+ .+.+++...++.++++|...|-++++++..+.. .+ ....+.+++
T Consensus 72 ~~l~~~~ipvV~~~~~--~~~---~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~l~~~~~~~~~~--~~r~~gf~~ 141 (268)
T cd06298 72 EEFKRSPTPVVLAGSV--DED---NELP---SVNIDYKKAAFEATELLIKNGHKKIAFISGPLEDSING--DERLAGYKE 141 (268)
T ss_pred HHHhcCCCCEEEEccc--cCC---CCCC---EEEECcHHHHHHHHHHHHHcCCceEEEEeCCcccccch--hHHHHHHHH
Confidence 4556679999998754 211 1223 357788888899999998889999999985433 34 667788889
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC-CeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-SRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+++.| ..+.......... +.......++++.+.. +++|+. .+...+..+++++++.|+.-+
T Consensus 142 ~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ai~~--~~d~~a~~~~~~l~~~g~~vp 204 (268)
T cd06298 142 ALSEAN-IEFDESLIFEGDY----TYESGYELAEELLEDGKPTAAFV--TDDELAIGILNAAQDAGLKVP 204 (268)
T ss_pred HHHHcC-CCCCHHHeEeCCC----ChhHHHHHHHHHhcCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCc
Confidence 998887 6542211111111 1123334556665544 666665 455567789999999998643
|
Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators. |
| >cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0013 Score=62.35 Aligned_cols=200 Identities=13% Similarity=0.081 Sum_probs=120.9
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcC-CChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~~~~~v 113 (550)
+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++. .++.+||.. ..+.....+
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~l~~~~~-~~vdgii~~~~~~~~~~~~ 72 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEAL-----GGDLRV--YDAGGDDAKQADQIDQAIA-QKVDAIIIQHGRAEVLKPW 72 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHc-----CCEEEE--ECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChhhhHHH
Confidence 588898853 333345556666666654 555544 5777788777777777776 588888864 333333344
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH--cCCeEEEEEEEcC-CCCCcchhHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDN-VYGGDSGKLALLA 190 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~--~~w~~v~ii~~~~-~~g~~~~~~~~l~ 190 (550)
...+...++|+|..... .+. +.+..+.++....++.+++++.. .|.++++++...+ ... ......+.
T Consensus 73 i~~~~~~~ipvV~~~~~--~~~------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~--~~R~~g~~ 142 (273)
T cd06305 73 VKRALDAGIPVVAFDVD--SDN------PKVNNTTQDDYSLARLSLDQLVKDLGGKGNVGYVNVAGFPPL--DRRYDVWQ 142 (273)
T ss_pred HHHHHHcCCCEEEecCC--CCC------CccceeeechHHHHHHHHHHHHHHhCCCCCEEEEEccCCchH--HHHHHHHH
Confidence 45567789999998764 211 22334667888888888998866 5889999997542 122 33445667
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCC----eEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQS----RVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~----~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+++.+.+.+.......... +..+....++++.+..+ ++|+ +.+...+..++..+++.|+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ai~--~~~d~~a~g~~~~l~~~g~~~ 209 (273)
T cd06305 143 AVLKAYPGIKEVAELGDVSNN----TAQDAAAQVEAVLKKYPKGGIDAIW--AAWDEFAKGAKQALDEAGRTD 209 (273)
T ss_pred HHHHHCCCcEEeccccccccc----chhHHHHHHHHHHHHCCCcccCeEE--EcChhhhHHHHHHHHHcCCCC
Confidence 777665412222211111110 22334455555544433 4444 456667788899999999864
|
Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR. |
| >COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0049 Score=60.07 Aligned_cols=210 Identities=12% Similarity=0.123 Sum_probs=132.8
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~ 112 (550)
..+||++.+... ..+..++..++++.-+.. |....+...+...|+..-++.+.+++. .++.+|+ .|.++.....
T Consensus 33 ~~~i~~~~~~~~---~~f~~~~~~g~~~~a~~~-g~~~~~~~~~~~~d~~~Q~~~i~~~ia-~~~daIiv~~~d~~~~~~ 107 (322)
T COG1879 33 GKTIGVVVPTLG---NPFFQAVRKGAEAAAKKL-GVVVAVVIADAQNDVAKQIAQIEDLIA-QGVDAIIINPVDPDALTP 107 (322)
T ss_pred CceEEEEeccCC---ChHHHHHHHHHHHHHHHc-CCcEEEEecccccChHHHHHHHHHHHH-cCCCEEEEcCCChhhhHH
Confidence 488999998763 334444444443333321 335666677888999889999999987 5776555 6888888888
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cC-CeEEEEEEEcCCCCCcchhHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YN-WRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~-w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
...-+...+||+|.+... .+.. ......+..+....+...++++.+ ++ .-++.++.....+.......+.++
T Consensus 108 ~v~~a~~aGIpVv~~d~~--~~~~----~~~~~~vg~dn~~~G~~~a~~l~~~~~~~g~v~~~~g~~~~~~~~~R~~G~~ 181 (322)
T COG1879 108 AVKKAKAAGIPVVTVDSD--IPGP----GDRVAYVGSDNYKAGRLAAEYLAKALGGKGKVVVLVGSPGNSSAEERVKGFR 181 (322)
T ss_pred HHHHHHHCCCcEEEEecC--CCCC----CceeEEEecCcHHHHHHHHHHHHHHhCCCCeEEEEecCCCCchHHHHHhhHH
Confidence 888899999999998876 2222 123444555777777777888743 43 244666665443222356778889
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+.+ ..+.......... +.+.-......+....+++-.+++.....+.-..+++++.|..+
T Consensus 182 ~~l~~~~-~~~~v~~~~~~~~----~~~~a~~~~~~~L~~~pdi~~i~~~~d~~a~ga~~A~~~~g~~~ 245 (322)
T COG1879 182 DALKEHP-PDIEVVDVQTGDW----DRDKALEVMEDLLAANPDIDGIYAANDGMALGAIQALKAAGRKG 245 (322)
T ss_pred HHHHhCC-CcEEEeeccCCcc----cHHHHHHHHHHHHHhCCCceEEEECCchhHHHHHHHHHHcCCCC
Confidence 9999877 4222222122111 22233455666666666765553556666666777888888876
|
|
| >TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.7e-06 Score=78.61 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=63.1
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.+++++.++ .++||....++. .+.||.+||++++++.+|.++ ++++. -.|+.++..|..|++|+
T Consensus 32 ~~~l~v~~~---~~pP~~~~~~~g----------~~~G~~~dl~~~i~~~lg~~~-~~~~~--~~w~~~~~~l~~G~~Di 95 (275)
T TIGR02995 32 QGFARIAIA---NEPPFTYVGADG----------KVSGAAPDVARAIFKRLGIAD-VNASI--TEYGALIPGLQAGRFDA 95 (275)
T ss_pred CCcEEEEcc---CCCCceeECCCC----------ceecchHHHHHHHHHHhCCCc-eeecc--CCHHHHHHHHHCCCcCE
Confidence 456788875 468898764332 578999999999999999862 23333 35999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
.++.+++|.+|++-+.
T Consensus 96 ~~~~~~~t~eR~~~~~ 111 (275)
T TIGR02995 96 IAAGLFIKPERCKQVA 111 (275)
T ss_pred EeecccCCHHHHhccc
Confidence 9999999999987543
|
Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes. |
| >cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=62.54 Aligned_cols=200 Identities=12% Similarity=0.096 Sum_probs=117.5
Q ss_pred EEEEEecC-----CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 37 IGAIVDAN-----SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 37 IG~i~~~~-----~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
||+++|.. .........+++.++++ . |+.+.+...+.. ....+.+.+++...++.+||.........
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~i~~~~~~---~--g~~~~~~~~~~~---~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (268)
T cd06271 2 IGLVLPTGEREEGDPFFAEFLSGLSEALAE---H--GYDLVLLPVDPD---EDPLEVYRRLVESGLVDGVIISRTRPDDP 73 (268)
T ss_pred eEEEeCCcccccCCccHHHHHHHHHHHHHH---C--CceEEEecCCCc---HHHHHHHHHHHHcCCCCEEEEecCCCCCh
Confidence 78999862 22333444555444443 2 666665544332 23445566666555788777533222222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
....+...++|+|..... .+. ...++ +.++....+..+++++...|.++++++.............+.+++
T Consensus 74 -~~~~~~~~~ipvV~~~~~--~~~---~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (268)
T cd06271 74 -RVALLLERGFPFVTHGRT--ELG---DPHPW---VDFDNEAAAYQAVRRLIALGHRRIALLNPPEDLTFAQHRRAGYRR 144 (268)
T ss_pred -HHHHHHhcCCCEEEECCc--CCC---CCCCe---EeeCcHHHHHHHHHHHHHcCCCcEEEecCccccchHHHHHHHHHH
Confidence 234556789999987654 221 22344 456777888888998888899999999754432111456678888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+++.+ ..+.....+.... +.......++++.+. .+++|+. .+...+..+++++++.|+..+
T Consensus 145 ~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vp 208 (268)
T cd06271 145 ALAEAG-LPLDPALIVSGDM----TEEGGYAAAAELLALPDRPTAIVC--SSELMALGVLAALAEAGLRPG 208 (268)
T ss_pred HHHHhC-CCCCCceEEeCCC----ChHHHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHHHHHHhCCCCC
Confidence 998887 6542221121111 223334455555433 3666666 455667789999999998644
|
Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso |
| >TIGR02285 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.3e-05 Score=75.78 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=62.2
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC-CCCCCeEEEecCCChHHHHHhhhccccc
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKVNY 530 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l-~f~~~~~~~~~~g~w~Gmi~el~~~~ad 530 (550)
.+++++..+ .|+||.+...+. ...||.+|+++++++.+ +++ ++++.. .|++++..| .++.|
T Consensus 17 ~~~l~~~~~---~~pPf~~~~~~~----------~~~G~~~~i~~~i~~~~~~~~--~~~~~~--pw~r~l~~l-~~~~d 78 (268)
T TIGR02285 17 KEAITWIVN---DFPPFFIFSGPS----------KGRGVFDVILQEIRRALPQYE--HRFVRV--SFARSLKEL-QGKGG 78 (268)
T ss_pred cceeEEEec---ccCCeeEeCCCC----------CCCChHHHHHHHHHHHcCCCc--eeEEEC--CHHHHHHHH-hcCCC
Confidence 456777765 578998763221 56799999999999998 877 665553 599999999 89999
Q ss_pred EEeeceeeeeeeeeEEE
Q 008863 531 FNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 531 ~a~~~~ti~~~r~~~~~ 547 (550)
+++.++++|+||++.+.
T Consensus 79 ~~~~~~~~t~eR~~~~~ 95 (268)
T TIGR02285 79 VCTVNLLRTPEREKFLI 95 (268)
T ss_pred eEEeeccCCcchhhcee
Confidence 99989999999998764
|
Members of this family are found in several Proteobacteria, including Pseudomonas putida KT2440, Bdellovibrio bacteriovorus HD100 (three members), Aeromonas hydrophila, and Chromobacterium violaceum ATCC 12472. The function is unknown. |
| >PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0011 Score=63.06 Aligned_cols=204 Identities=15% Similarity=0.112 Sum_probs=130.0
Q ss_pred EEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||+++|.-. ..-.....+++-+.++. |+.+-+ .++..++..- +....+.+ .+|.++|=.........+.
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~~-----Gy~l~l--~~t~~~~~~e-~~i~~l~~-~~vDGiI~~s~~~~~~~l~ 73 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEAREH-----GYQLLL--CNTGDDEEKE-EYIELLLQ-RRVDGIILASSENDDEELR 73 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHHT-----TCEEEE--EEETTTHHHH-HHHHHHHH-TTSSEEEEESSSCTCHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--ecCCCchHHH-HHHHHHHh-cCCCEEEEecccCChHHHH
Confidence 6999999873 22334445555444442 676654 4555565554 55555554 6788777432222234566
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeE-EEEEEEcCCCCCcchhHHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRR-VAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~-v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
.+.+. ++|+|..... .. .....|++ ..++...+..++++|...|.++ ++++..+.+........+.+.+++
T Consensus 74 ~~~~~-~iPvV~~~~~---~~-~~~~~~~V---~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al 145 (279)
T PF00532_consen 74 RLIKS-GIPVVLIDRY---ID-NPEGVPSV---YIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDAL 145 (279)
T ss_dssp HHHHT-TSEEEEESS----SC-TTCTSCEE---EEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHH
T ss_pred HHHHc-CCCEEEEEec---cC-CcccCCEE---EEcchHHHHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHH
Confidence 66666 9999997755 11 11133443 4667778888999999999999 999998765321144556689999
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe--EEEEEcCCHHHHHHHHHHHHHcC-CCCCCEE
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR--VFIVLQASLDMTIHLFTEANRMG-LVGKDSV 263 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~--~ii~~~~~~~~~~~il~~a~~~g-~~~~~~~ 263 (550)
++.| +.+.......... +..+-...++++.+..++ .|+ +++...+..+++.+.+.| +..+.-+
T Consensus 146 ~~~G-l~~~~~~i~~~~~----~~~~g~~~~~~ll~~~p~idai~--~~nd~~A~ga~~~l~~~gr~~ip~di 211 (279)
T PF00532_consen 146 KEAG-LPIDEEWIFEGDF----DYESGYEAARELLESHPDIDAIF--CANDMMAIGAIRALRERGRLKIPEDI 211 (279)
T ss_dssp HHTT-SCEEEEEEEESSS----SHHHHHHHHHHHHHTSTT-SEEE--ESSHHHHHHHHHHHHHTT-TCTTTEE
T ss_pred HHcC-CCCCcccccccCC----CHHHHHHHHHHHHhhCCCCEEEE--EeCHHHHHHHHHHHHHcCCcccChhh
Confidence 9999 8555444333221 334545666777766666 665 478888899999999999 6655443
|
The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A .... |
| >PRK11260 cystine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.5e-05 Score=75.41 Aligned_cols=79 Identities=15% Similarity=0.301 Sum_probs=63.8
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.+.++|... ..++||....++ ....||-+|++++|++.+|.+ +++++. .|..+...|.+|++|+
T Consensus 40 ~~~l~v~~~--~~~~P~~~~~~~----------g~~~G~~~dl~~~i~~~lg~~--~e~~~~--~~~~~~~~l~~G~~D~ 103 (266)
T PRK11260 40 RGTLLVGLE--GTYPPFSFQGED----------GKLTGFEVEFAEALAKHLGVK--ASLKPT--KWDGMLASLDSKRIDV 103 (266)
T ss_pred CCeEEEEeC--CCcCCceEECCC----------CCEEEehHHHHHHHHHHHCCe--EEEEeC--CHHHHHHHHhcCCCCE
Confidence 456677743 357889765332 268899999999999999998 777764 5999999999999999
Q ss_pred EeeceeeeeeeeeEE
Q 008863 532 NYHDKLLFKKKKRLC 546 (550)
Q Consensus 532 a~~~~ti~~~r~~~~ 546 (550)
++++++++.+|++-+
T Consensus 104 ~~~~~~~~~~r~~~~ 118 (266)
T PRK11260 104 VINQVTISDERKKKY 118 (266)
T ss_pred EEeccccCHHHHhcc
Confidence 999999999997654
|
|
| >cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0016 Score=61.51 Aligned_cols=196 Identities=12% Similarity=0.073 Sum_probs=116.0
Q ss_pred EEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 37 IGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 37 IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
||++.|... ..-.....+++-+.++. |+.+ .+.++..++....+....++. .++.++|......... ...
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~-~~~ 72 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREA-----GYGV--LLGDTRSDPEREQEYLDLLRR-KQADGIILLDGSLPPT-ALT 72 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHc-----CCeE--EEecCCCChHHHHHHHHHHHH-cCCCEEEEecCCCCHH-HHH
Confidence 788887652 23334555665555553 5555 345677777655555555554 6888877632221111 222
Q ss_pred hhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHHHHHH
Q 008863 116 IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLAEAL 193 (550)
Q Consensus 116 ~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l~~~l 193 (550)
.. ..++|+|..... . ... ....+..+....+..+++++...|.++++++..+.. .+ ....+.|.+.+
T Consensus 73 ~~-~~~ipvv~~~~~---~--~~~---~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~--~~r~~gf~~~~ 141 (267)
T cd06284 73 AL-AKLPPIVQACEY---I--PGL---AVPSVSIDNVAAARLAVDHLISLGHRRIALITGPRDNPLA--RDRLEGYRQAL 141 (267)
T ss_pred HH-hcCCCEEEEecc---c--CCC---CcceEEecccHHHHHHHHHHHHcCCceEEEEcCCccchhH--HHHHHHHHHHH
Confidence 33 349999986532 1 111 223456777888899999998889999999976432 33 55677888888
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
++.+ +.+.......... +.++....++++.+. .++.|+. .+...+..+++++++.|+..
T Consensus 142 ~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~~~~a~g~~~al~~~g~~~ 202 (267)
T cd06284 142 AEAG-LPADEELIQEGDF----SLESGYAAARRLLALPDRPTAIFC--FSDEMAIGAISALKELGLRV 202 (267)
T ss_pred HHcC-CCCCcceEEeCCC----ChHHHHHHHHHHHhCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCC
Confidence 8877 5432211111110 112333445555433 4566665 45556778999999999863
|
This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding. |
| >PRK10859 membrane-bound lytic transglycosylase F; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.5e-05 Score=81.82 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=62.0
Q ss_pred CCCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhccccc
Q 008863 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNY 530 (550)
Q Consensus 451 ~~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad 530 (550)
..++|||++.. .|+.....+. ...||.+||++++++.+|.+ ++++.. ..|+.++..|.+|++|
T Consensus 41 ~~g~LrVg~~~----~P~~~~~~~~----------~~~G~~~DLl~~ia~~LGv~--~e~v~~-~~~~~ll~aL~~G~iD 103 (482)
T PRK10859 41 ERGELRVGTIN----SPLTYYIGND----------GPTGFEYELAKRFADYLGVK--LEIKVR-DNISQLFDALDKGKAD 103 (482)
T ss_pred hCCEEEEEEec----CCCeeEecCC----------CcccHHHHHHHHHHHHhCCc--EEEEec-CCHHHHHHHHhCCCCC
Confidence 34567887652 3444432221 23899999999999999999 776633 4799999999999999
Q ss_pred EEeeceeeeeeeeeEEE
Q 008863 531 FNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 531 ~a~~~~ti~~~r~~~~~ 547 (550)
|+++++++|.+|++.+.
T Consensus 104 i~~~~lt~T~eR~~~~~ 120 (482)
T PRK10859 104 LAAAGLTYTPERLKQFR 120 (482)
T ss_pred EEeccCcCChhhhccCc
Confidence 99999999999998654
|
|
| >cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0062 Score=58.75 Aligned_cols=210 Identities=9% Similarity=0.086 Sum_probs=116.3
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~v 113 (550)
+||+++|.. ...-.....+++-+.+.+ +..+.+.+.+...++..-.+...+++. .++.+|| .|..+......
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~-----~~g~~~~~~~~~~~~~~q~~~i~~l~~-~~vdgiii~~~~~~~~~~~ 74 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKEN-----GGKVEFTFYDAKNNQSTQNEQIDTALA-KGVDLLAVNLVDPTAAQTV 74 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhh-----CCCeeEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEecCchhhHHHH
Confidence 589999854 222234445666666554 123455556777777766666777776 5787665 34444333445
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCe-----------EEEEEEEcCCCC
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWR-----------RVAAIYEDNVYG 180 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~-----------~v~ii~~~~~~g 180 (550)
...+...++|+|..... .+.......+-+..+.++....+..++++|... +-+ .++++..+....
T Consensus 75 ~~~~~~~giPvV~~~~~--~~~~~~~~~~~~~~V~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~~~~ 152 (303)
T cd01539 75 INKAKQKNIPVIFFNRE--PEEEDIKSYDKAYYVGTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEPGHP 152 (303)
T ss_pred HHHHHHCCCCEEEeCCC--CcccccccccccceeeecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCCCCc
Confidence 45567789999988754 221111111223346778777788888887543 221 234455432211
Q ss_pred CcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 181 GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 181 ~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
......+.+++.+++.+ ..+.......... ..+.....++++... ..+.|+. .+...+..+++++++.|+
T Consensus 153 ~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~L~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~ 225 (303)
T cd01539 153 DAIARTKYSIETLNDAG-IKTEELASDTANW----DRAQAKDKMDALLLKYGDKIEAVIA--NNDAMALGAIEALQKYGY 225 (303)
T ss_pred hhhhhhhhHHHHHHhcC-CCeEEEEeecCCC----CHHHHHHHHHHHHHhcCCCccEEEE--CCchHHHHHHHHHHHcCC
Confidence 11344667888888877 6543221111111 222333345554432 2565554 555566678899999987
Q ss_pred CCC
Q 008863 258 VGK 260 (550)
Q Consensus 258 ~~~ 260 (550)
..+
T Consensus 226 ~~p 228 (303)
T cd01539 226 NKG 228 (303)
T ss_pred CcC
Confidence 653
|
Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. |
| >cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0022 Score=60.65 Aligned_cols=201 Identities=12% Similarity=0.102 Sum_probs=117.2
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||+++|.. .........+++.+.++. |+.+. +.++..++..-.+....++. .++.+|+=.........+.
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~ 72 (269)
T cd06275 1 TIGMLVTTSTNPFFAEVVRGVEQYCYRQ-----GYNLI--LCNTEGDPERQRSYLRMLAQ-KRVDGLLVMCSEYDQPLLA 72 (269)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHHHHc-----CCEEE--EEeCCCChHHHHHHHHHHHH-cCCCEEEEecCCCChHHHH
Confidence 388999864 334445556666666553 55654 34555666655566666665 4666555321111222223
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
.+....++|+|..... .+ ....++ +..+....+..++++|...|-++++++.............+.+.+.++
T Consensus 73 ~l~~~~~ipvV~i~~~--~~---~~~~~~---V~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~ 144 (269)
T cd06275 73 MLERYRHIPMVVMDWG--PE---DDFADK---IQDNSEEGGYLATRHLIELGHRRIGCITGPLEKAPAQQRLAGFRRAMA 144 (269)
T ss_pred HHHhcCCCCEEEEecc--cC---CCCCCe---EeeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHH
Confidence 3334569999987754 21 112233 456777778888899988899999999754321111445677888888
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+ +.+.......... +.......++++.+. .++.|+. .+...+..+++.+++.|..-
T Consensus 145 ~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~~l~~~g~~v 204 (269)
T cd06275 145 EAG-LPVNPGWIVEGDF----ECEGGYEAMQRLLAQPKRPTAVFC--GNDLMAMGALCAAQEAGLRV 204 (269)
T ss_pred HcC-CCCCHHHhccCCC----ChHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 887 6543211111111 112334455565544 3555554 56677778999999998753
|
Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a |
| >cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0078 Score=56.92 Aligned_cols=205 Identities=12% Similarity=0.052 Sum_probs=121.5
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~v 113 (550)
+||+++|.. ..+-.+...+++.+.+++ |..+.+.+.++..++..-.+....+++ .++.+|| .|.........
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~dgiIi~~~~~~~~~~~ 74 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKL-----NPGVKVTVVSADYDLNKQVSQIDNFIA-AKVDLILLNAVDSKGIAPA 74 (271)
T ss_pred CeEEEecccCCHHHHHHHHHHHHHHHHh-----CCCeEEEEccCCCCHHHHHHHHHHHHH-hCCCEEEEeCCChhHhHHH
Confidence 489999864 223344556666666664 234555556666677655556666665 4676554 34333322333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC-CCCcchhHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGGDSGKLALLA 190 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~-~g~~~~~~~~l~ 190 (550)
...+...++|+|..... .+ ... ..+..+....++.+++++... |.++++++..... .. ....+.++
T Consensus 75 i~~~~~~~ipvv~~~~~--~~----~~~---~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~g~~~~~~--~~R~~g~~ 143 (271)
T cd06321 75 VKRAQAAGIVVVAVDVA--AE----GAD---ATVTTDNVQAGEISCQYLADRLGGKGNVAILNGPPVSAV--LDRVAGCK 143 (271)
T ss_pred HHHHHHCCCeEEEecCC--CC----Ccc---ceeeechHHHHHHHHHHHHHHhCCCceEEEEeCCCCchH--HHHHHHHH
Confidence 34456679999998765 22 111 246778888888899998776 9999999976533 22 45567788
Q ss_pred HHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 191 EALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 191 ~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
+.+++. + ++..... ..... +...-...++++.+. .++.|+. .+...+..+++++++.|+ .+..++..
T Consensus 144 ~~~~~~~~-~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~--~di~v~g~ 213 (271)
T cd06321 144 AALAKYPG-IKLLSDD-QNGKG----SRDGGLRVMQGLLTRFPKLDGVFA--INDPTAIGADLAAKQAGR--NDIKITSV 213 (271)
T ss_pred HHHHhCCC-cEEEeee-cCCCC----ChhhHHHHHHHHHHhCCCCCEEEE--CCchhHHHHHHHHHHcCC--CCcEEEEe
Confidence 888887 5 5432111 11111 112222344555433 4566555 566677788999999998 23444443
|
This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0054 Score=58.39 Aligned_cols=211 Identities=12% Similarity=0.077 Sum_probs=116.4
Q ss_pred EEEEEEecC--CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC--CCHHHHHHHHHHhhhcCCeEEEEcCCChH-HH
Q 008863 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN--RDPFQAATAAQELINKEKVKVIAGMETWE-ET 110 (550)
Q Consensus 36 ~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~--~~~~~a~~~~~~li~~~~v~aiiG~~~s~-~~ 110 (550)
|||+++|.. ...-.....++..+.+ .. |+.+.+...++. .++..-.+....++. .++.+||=..... ..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~~~i~~~~~---~~--g~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vDgiIv~~~~~~~~ 74 (280)
T cd06303 1 KIAVIYPGQQISDYWVRNIASFTARLE---EL--NIPYELTQFSSRPGIDHRLQSQQLNEALQ-SKPDYLIFTLDSLRHR 74 (280)
T ss_pred CeeEEecCccHHHHHHHHHHHHHHHHH---Hc--CCcEEEEEeccCcccCHHHHHHHHHHHHH-cCCCEEEEcCCchhhH
Confidence 589999863 1111223333333333 22 677776654433 355555555556665 5788777532222 22
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH--cCCeEEEEEEEcCC-CCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDNV-YGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~--~~w~~v~ii~~~~~-~g~~~~~~~ 187 (550)
..+.. +...++|.+...... .+.......+....+.++....+..++++|.. .|.+++++|..... .. ....+
T Consensus 75 ~~~~~-l~~~~~p~V~i~~~~-~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~g~~~i~~l~~~~~~~~--~~R~~ 150 (280)
T cd06303 75 KLIER-VLASGKTKIILQNIT-TPVKAWLKHQPLLYVGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYIS--TARGD 150 (280)
T ss_pred HHHHH-HHhCCCCeEEEeCCC-CCccccccCCCceEeCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCcch--hHHHH
Confidence 33333 334577766653210 12100000112334677888888889998877 79999999976432 22 44567
Q ss_pred HHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 188 LLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 188 ~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
.+++.+++. + +.+... +.... +..+....++++.+. +++.|+ +.+...+..+++++++.|+. ++...
T Consensus 151 gf~~al~~~~~-~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~nd~~A~g~l~al~~~G~~-~dv~v 220 (280)
T cd06303 151 TFIDCVHARNN-WTLTSE--FYTDA----TRQKAYQATSDILSNNPDVDFIY--ACSTDIALGASDALKELGRE-DDILI 220 (280)
T ss_pred HHHHHHHhCCC-ceEEEe--ecCCC----CHHHHHHHHHHHHHhCCCCcEEE--ECCcHHHHHHHHHHHHcCCC-CCcEE
Confidence 888888887 6 654322 11111 223334455555443 345555 46667777899999999986 44334
Q ss_pred EE
Q 008863 265 IV 266 (550)
Q Consensus 265 i~ 266 (550)
++
T Consensus 221 vg 222 (280)
T cd06303 221 NG 222 (280)
T ss_pred Ee
Confidence 43
|
Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate |
| >cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0013 Score=62.13 Aligned_cols=206 Identities=16% Similarity=0.123 Sum_probs=120.9
Q ss_pred EEEEEEecC--CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
.||+++|.. ..+......+++.+.++. |+.+.+ .++..+...-.+....+.. .++.+||-....... +
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~~i~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~~dgiii~~~~~~~--~ 70 (269)
T cd06288 1 TIGLISDEIATTPFAVEIILGAQDAAREH-----GYLLLV--VNTGGDDELEAEAVEALLD-HRVDGIIYATMYHRE--V 70 (269)
T ss_pred CeEEEeCCCCCCccHHHHHHHHHHHHHHC-----CCEEEE--EeCCCCHHHHHHHHHHHHH-cCCCEEEEecCCCCh--h
Confidence 489999874 333445556676666553 556544 4455555444455556665 577777653322111 1
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
.......++|++..... .+. ...+ .+.+++...+..+++++...|-++++++..+..........+.+.+.+
T Consensus 71 ~~~~~~~~ipvv~~~~~--~~~---~~~~---~v~~d~~~~~~~a~~~l~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~~ 142 (269)
T cd06288 71 TLPPELLSVPTVLLNCY--DAD---GALP---SVVPDEEQGGYDATRHLLAAGHRRIAFINGEPWMLAAKDRLKGYRQAL 142 (269)
T ss_pred HHHHHhcCCCEEEEecc--cCC---CCCC---eEEEccHHHHHHHHHHHHHcCCceEEEEeCCccchhHHHHHHHHHHHH
Confidence 12234578999987654 221 1223 466788888999999998779999999986543111145677888888
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
++.+ +.+.......... +..+....++++.+. .+++|+. .+...+..+++++++.|+.-+.-+.++
T Consensus 143 ~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~~~~~~l~~~g~~vp~di~v~ 210 (269)
T cd06288 143 AEAG-IPFDPDLVVHGDW----SADDGYEAAAALLDLDDRPTAIFC--GNDRMAMGAYQALLERGLRIPQDVSVV 210 (269)
T ss_pred HHcC-CCCCHHHeEeCCC----ChHHHHHHHHHHHhCCCCCCEEEE--eCcHHHHHHHHHHHHcCCCCcccceEE
Confidence 8877 5432211111110 112334445565544 4566654 666677789999999998543334443
|
This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0094 Score=56.49 Aligned_cols=205 Identities=10% Similarity=0.070 Sum_probs=120.7
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
.||++.|.. ..+-.....+++-+.++....+.| +.+.+.+...++....+....++. .++.+|+- |.........
T Consensus 1 ~Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~-~~vDgiii~~~~~~~~~~~ 77 (274)
T cd06311 1 TIGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPD--VEFILVTASNDTEQQNAQQDLLIN-RKIDALVILPFESAPLTQP 77 (274)
T ss_pred CeeeeccCCCCcHHHHHHHHHHHHHHHhhhhCCC--eEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCchhhHHH
Confidence 378888643 333345566777777666543223 455556666666555555555665 56776653 4333332233
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...+||+|..... .+.. . .....+.++....+...++++... +.++++++...... ......+.+.+
T Consensus 78 i~~~~~~gIpvV~~d~~--~~~~--~--~~~~~V~~d~~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~-~~~~R~~gf~~ 150 (274)
T cd06311 78 VAKAKKAGIFVVVVDRG--LSSP--G--AQDLYVAGDNYGMGRVAGEYIATKLGGNGNIVVLRGIPTP-IDNERVDAFDA 150 (274)
T ss_pred HHHHHHCCCeEEEEcCC--CCCC--c--ccceEEcCCcHHHHHHHHHHHHHHhCCCCeEEEEECCCCc-chhHHHHHHHH
Confidence 34456789999997654 1111 0 112235777788888888988665 78899999754331 11455678888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.+ +++.... .... +.......++++.+. +.++|+. .+...+..++.++++.|...
T Consensus 151 ~l~~~~-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~~ 211 (274)
T cd06311 151 AIAKYP-IKILDRQ--YANW----NRDDAFSVMQDLLTKFPKIDAVWA--HDDDMAVGVLAAIKQAGRTD 211 (274)
T ss_pred HHhhCC-cEEEecc--CCCC----cHHHHHHHHHHHHHhCCCcCEEEE--CCCcHHHHHHHHHHHcCCCC
Confidence 998888 7665321 1111 112233444454333 4566554 45556778899999999763
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0027 Score=60.20 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=112.9
Q ss_pred cEEEEEEEecCC--------ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-C
Q 008863 34 VTKIGAIVDANS--------QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-M 104 (550)
Q Consensus 34 ~i~IG~i~~~~~--------~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~ 104 (550)
+-.||+++|... ..-.....+++.++++ .|+.+.+...+. +. ...+.+.+...++.+||- +
T Consensus 3 s~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~-----~g~~~~v~~~~~--~~---~~~~~~~l~~~~~dgiii~~ 72 (275)
T cd06295 3 TDTIALVVPEPHERDQSFSDPFFLSLLGGIADALAE-----RGYDLLLSFVSS--PD---RDWLARYLASGRADGVILIG 72 (275)
T ss_pred ceEEEEEecCccccccccCCchHHHHHHHHHHHHHH-----cCCEEEEEeCCc--hh---HHHHHHHHHhCCCCEEEEeC
Confidence 457999998631 1222333444433333 267776654332 21 233445444457776653 2
Q ss_pred CChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcch
Q 008863 105 ETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 105 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~ 184 (550)
.... . .....+...++|+|..+.. .+. ..++ .+.+++...+..+++++...|.++++++..+........
T Consensus 73 ~~~~-~-~~~~~~~~~~ipvV~~~~~--~~~---~~~~---~V~~d~~~~g~~~a~~l~~~g~~~i~~i~~~~~~~~~~~ 142 (275)
T cd06295 73 QHDQ-D-PLPERLAETGLPFVVWGRP--LPG---QPYC---YVGSDNVGGGRLATEHLLARGRRRIAFLGGPQDMPEGEE 142 (275)
T ss_pred CCCC-h-HHHHHHHhCCCCEEEECCc--cCC---CCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEcCCCCcchhHH
Confidence 2211 1 2234556789999987754 221 2223 466788888999999998889999999986543111145
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
..+.|.+.+.+.+ ..+.......... ........+.++.+. .++.|+. ++...+..+++.+++.|+.
T Consensus 143 r~~gf~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~~~~a~g~~~~l~~~g~~ 211 (275)
T cd06295 143 RLEGYREALAEAG-LPLDPRLVAPGDF----TEESGRAAMRALLERGPDFDAVFA--ASDLMALGALRALREAGRR 211 (275)
T ss_pred HHHHHHHHHHHcC-CCCChhhEEeccC----CHHHHHHHHHHHHhCCCCCCEEEE--CCcHHHHHHHHHHHHhCCC
Confidence 6677888888877 5433211111111 112333445554433 4576666 4456667888999999985
|
This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang |
| >cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0027 Score=59.95 Aligned_cols=199 Identities=12% Similarity=0.125 Sum_probs=116.8
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||++.|.. ...-.....+++.+.++. |+.+.+ .+...++..-.+...+++. .++.+||-...... ....
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~-~~~~ 71 (268)
T cd01575 1 LVAVLVPSLSNSVFADVLQGISDVLEAA-----GYQLLL--GNTGYSPEREEELLRTLLS-RRPAGLILTGLEHT-ERTR 71 (268)
T ss_pred CEEEEeCCCcchhHHHHHHHHHHHHHHc-----CCEEEE--ecCCCCchhHHHHHHHHHH-cCCCEEEEeCCCCC-HHHH
Confidence 378999864 222334445666665553 555544 4444455444555566665 57777764222111 2233
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLAEA 192 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l~~~ 192 (550)
..+...++|+|..... .+. +....+..+....+..+++++...|-+++++|..+.. .. ....+.+++.
T Consensus 72 ~~~~~~~ipvv~~~~~--~~~------~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~--~~r~~gf~~~ 141 (268)
T cd01575 72 QLLRAAGIPVVEIMDL--PPD------PIDMAVGFSHAEAGRAMARHLLARGYRRIGFLGARMDDTRA--QQRLEGFRAA 141 (268)
T ss_pred HHHHhcCCCEEEEecC--CCC------CCCCeEEeCcHHHHHHHHHHHHHCCCCcEEEecCCCCcccH--HHHHHHHHHH
Confidence 4455679999987543 111 1122356777888888999998889999999987643 22 4456778888
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+++.+ ............. ........+.++.+. .++.|+. ++...+..+++.+.+.|..-+
T Consensus 142 l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~~~~~~l~~~g~~~p 204 (268)
T cd01575 142 LRAAG-LDPPLVVTTPEPS----SFALGRELLAELLARWPDLDAVFC--SNDDLALGALFECQRRGISVP 204 (268)
T ss_pred HHHcC-CCCCceeEeccCC----CHHHHHHHHHHHHhCCCCCCEEEE--CCcHHHHHHHHHHHHhCCCCC
Confidence 88877 5322211111111 122334455555433 4666665 555667788999999997533
|
This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, |
| >TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.2e-05 Score=73.17 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=53.3
Q ss_pred eEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHH---HhhhcccccE
Q 008863 455 MRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLI---NGVYDKVNYF 531 (550)
Q Consensus 455 ~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi---~el~~~~ad~ 531 (550)
++|++ ...|+||.+. + . .||.|||+++|++.+|++ +++++. .|++++ ..|.+|++|+
T Consensus 2 l~vg~--~~~~pPf~~~--~-----------~-~Gfdvdl~~~ia~~lg~~--~~~~~~--~~~~~~~~~~~L~~g~~Di 61 (246)
T TIGR03870 2 LRVCA--ATKEAPYSTK--D-----------G-SGFENKIAAALAAAMGRK--VVFVWL--AKPAIYLVRDGLDKKLCDV 61 (246)
T ss_pred eEEEe--CCCCCCCccC--C-----------C-CcchHHHHHHHHHHhCCC--eEEEEe--ccchhhHHHHHHhcCCccE
Confidence 45554 3467899874 1 1 499999999999999999 777764 599887 5899999999
Q ss_pred Eeeceeeeeee
Q 008863 532 NYHDKLLFKKK 542 (550)
Q Consensus 532 a~~~~ti~~~r 542 (550)
++ .+++|.+|
T Consensus 62 i~-~~~~t~~r 71 (246)
T TIGR03870 62 VL-GLDTGDPR 71 (246)
T ss_pred EE-eCCCChHH
Confidence 98 58988877
|
This predicted periplasmic protein, called MoxJ or MxaJ, is required for methanol oxidation in Methylobacterium extorquens. Two differing lines of evidence suggest two different roles. Forming one view, homology suggests it is the substrate-binding protein of an ABC transporter associated with methanol oxidation. The gene, furthermore, is found regular in genomes with, and only two or three genes away from, a corresponding permease and ATP-binding cassette gene pair. The other view is that this protein is an accessory factor or additional subunit of methanol dehydrogenase itself. Mutational studies show a dependence on this protein for expression of the PQQ-dependent, two-subunit methanol dehydrogenase (MxaF and MxaI) in Methylobacterium extorquens, as if it is a chaperone for enzyme assembly or a third subunit. A homologous N-terminal sequence was found in Paracoccus denitrificans as a 32Kd third subunit. This protein may, in |
| >cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.009 Score=56.32 Aligned_cols=194 Identities=15% Similarity=0.133 Sum_probs=116.8
Q ss_pred EEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHHH
Q 008863 37 IGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVVA 114 (550)
Q Consensus 37 IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v~ 114 (550)
||+++|... ..-.....+++.+.++ .|+.+ .+.++..++....+...++++ .++.++|- +..........
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~-----~g~~~--~i~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~~~~~ 73 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKK-----QKVNL--IVSIANQDLNKQLSDVEDFIT-KKVDAIVLSPVDSKGIRAAI 73 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHh-----cCCEE--EEecCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChhhhHHHH
Confidence 788887652 1222334444444443 25555 445666677667777777776 57887765 44333223333
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC-CCCcchhHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGGDSGKLALLAE 191 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~-~g~~~~~~~~l~~ 191 (550)
..+...++|+|..... .+ ..+.+..+.++....+...++++... |-+++++++.... .. ....+.+++
T Consensus 74 ~~~~~~~ipvV~~~~~--~~-----~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~--~~R~~gf~~ 144 (267)
T cd06322 74 AKAKKAGIPVITVDIA--AE-----GVAVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSV--VDRVRGFKE 144 (267)
T ss_pred HHHHHCCCCEEEEccc--CC-----CCceEEEEecChHHHHHHHHHHHHHHhCCCceEEEEecCCCccH--HHHHHHHHH
Confidence 4456789999998643 11 11223457788878888888888664 7889999975432 22 445677888
Q ss_pred HHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 192 ALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 192 ~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.+++. | +.+... .... ..+.....++++.+. +.++|+. .+...+..+++++++.|+
T Consensus 145 ~~~~~~~-~~~~~~---~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~~~~~al~~~g~ 203 (267)
T cd06322 145 ALADYPN-IKIVAV---QPGI----TRAEALTAAQNILQANPDLDGIFA--FGDDAALGAVSAIKAAGR 203 (267)
T ss_pred HHHhCCC-cEEEEe---cCCC----ChHHHHHHHHHHHHhCCCCCEEEE--cCCcHHHHHHHHHHHCCC
Confidence 88887 7 765321 1111 112333344554432 4565554 566677788999999998
|
This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >PRK09701 D-allose transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.036 Score=53.61 Aligned_cols=207 Identities=9% Similarity=0.005 Sum_probs=117.6
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||+++|.. ..+-.....+++-+.++. |+.+.+...+...+...-.+...+++. .++.+||- +..+......
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~-----g~~v~~~~~~~~~~~~~~~~~i~~l~~-~~vDgiIi~~~~~~~~~~~ 99 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKTL-----GVSVDIFASPSEGDFQSQLQLFEDLSN-KNYKGIAFAPLSSVNLVMP 99 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCeEEEecCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHHHH
Confidence 799999864 222334445555554442 667766543555566666666667776 47776664 3333222222
Q ss_pred HHhhccCCccEEeccCCCCCCcc--cCCCCCeEEEEecCcHHhHHHHHHHHHH-cCC--eEEEEEEEcCCCCCcchhHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLS--MSRRWPYLIRMASNDSEQMKCIADLARK-YNW--RRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w--~~v~ii~~~~~~g~~~~~~~~ 188 (550)
...+...+||++..... .+.. ..........+..+....+...+++|.. .|- ++++++.............+.
T Consensus 100 l~~~~~~giPvV~~~~~--~~~~~~~~~~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~~~~i~~l~g~~~~~~~~~R~~G 177 (311)
T PRK09701 100 VARAWKKGIYLVNLDEK--IDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNG 177 (311)
T ss_pred HHHHHHCCCcEEEeCCC--CCcccccccCCceEEEeccchHHHHHHHHHHHHHHhCCCCCEEEEEECCCCCccHHHHHHH
Confidence 23345679999998754 2211 1111122344678888888999998855 454 789888654332111455677
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+++.+++.+.+.+... ..... ...+....++++.+. .++.|+ +.+...+..++..+++.|..
T Consensus 178 f~~al~~~~~~~~~~~--~~~~~----~~~~~~~~~~~ll~~~~~~~~I~--~~~d~~A~g~~~al~~~G~~ 241 (311)
T PRK09701 178 ATEAFKKASQIKLVAS--QPADW----DRIKALDVATNVLQRNPNIKAIY--CANDTMAMGVAQAVANAGKT 241 (311)
T ss_pred HHHHHHhCCCcEEEEe--cCCCC----CHHHHHHHHHHHHHhCCCCCEEE--ECCcchHHHHHHHHHHcCCC
Confidence 8888877651333221 11110 122334455555443 355544 46666788899999999985
|
|
| >cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.005 Score=58.13 Aligned_cols=200 Identities=10% Similarity=0.055 Sum_probs=119.9
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||+++|.. ...-.....+++.+.++. |+.+.+ .++..++..-.+....+++ .++.+||-..+.... ...
T Consensus 1 ~igvi~p~~~~~~~~~~~~g~~~~a~~~-----g~~~~~--~~~~~~~~~~~~~i~~~~~-~~vdgii~~~~~~~~-~~~ 71 (268)
T cd06270 1 TIGLVVSDLDGPFFGPLLSGVESVARKA-----GKHLII--TAGHHSAEKEREAIEFLLE-RRCDALILHSKALSD-DEL 71 (268)
T ss_pred CEEEEEccccCcchHHHHHHHHHHHHHC-----CCEEEE--EeCCCchHHHHHHHHHHHH-cCCCEEEEecCCCCH-HHH
Confidence 389999864 333345556666666653 566654 3444555555555666665 578877753222111 213
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
..+...++|+|..... .+. ...++ +..+....++.+++++...|-+++++|.............+.+.+.++
T Consensus 72 ~~~~~~~ipvV~~~~~--~~~---~~~~~---v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~ 143 (268)
T cd06270 72 IELAAQVPPLVLINRH--IPG---LADRC---IWLDNEQGGYLATEHLIELGHRKIACITGPLTKEDARLRLQGYRDALA 143 (268)
T ss_pred HHHhhCCCCEEEEecc--CCC---CCCCe---EEECcHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHHHHH
Confidence 3456779999988754 221 11232 567888889999999988899999999864332111345677888888
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.| +.+.......... ...+....++++.+. .+++|+. ++...+..+++.+++.|+.-
T Consensus 144 ~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~~l~~~g~~i 203 (268)
T cd06270 144 EAG-IALDESLIIEGDF----TEEGGYAAMQELLARGAPFTAVFC--ANDEMAAGAISALREHGISV 203 (268)
T ss_pred HcC-CCCCcceEEECCC----CHHHHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCC
Confidence 887 6542211111111 223444555665544 3565554 55667778999999999853
|
Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi |
| >TIGR01481 ccpA catabolite control protein A | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0036 Score=61.17 Aligned_cols=200 Identities=16% Similarity=0.161 Sum_probs=120.0
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE--cCCChHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA--GMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii--G~~~s~~ 109 (550)
.+-.||+++|.. ..+-.....+++.+.++. |+.+.+ .+...++..-.+....++. .++.+|| ++...
T Consensus 58 ~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~-----g~~~~i--~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~-- 127 (329)
T TIGR01481 58 RTTTVGVIIPDISNIYYAELARGIEDIATMY-----KYNIIL--SNSDEDPEKEVQVLNTLLS-KQVDGIIFMGGTIT-- 127 (329)
T ss_pred CCCEEEEEeCCCCchhHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCC--
Confidence 467899999853 222334445555544442 566654 3444455444455555554 5777666 32211
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC---CCCcchhH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV---YGGDSGKL 186 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~---~g~~~~~~ 186 (550)
..+...+...++|+|..... .+ ....+ .+..++...+..++++|...|.++++++..... .+ ....
T Consensus 128 -~~~~~~l~~~~iPvV~~~~~--~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~--~~R~ 196 (329)
T TIGR01481 128 -EKLREEFSRSPVPVVLAGTV--DK---ENELP---SVNIDYKQATKEAVGELIAKGHKSIAFVGGPLSDSING--EDRL 196 (329)
T ss_pred -hHHHHHHHhcCCCEEEEecC--CC---CCCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccccch--HHHH
Confidence 22334456679999987654 21 11223 356777788888899988889999999975332 23 4566
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.|.+.+++.| +.+.......... +..+....++++.+..+++|+. .+...+..+++++++.|+.-+
T Consensus 197 ~Gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~p~ai~~--~~d~~A~g~~~al~~~g~~vP 263 (329)
T TIGR01481 197 EGYKEALNKAG-IQFGEDLVCEGKY----SYDAGYKAFAELKGSLPTAVFV--ASDEMAAGILNAAMDAGIKVP 263 (329)
T ss_pred HHHHHHHHHcC-CCCCcceEEecCC----ChHHHHHHHHHHhCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCC
Confidence 88888898888 6543221111111 1223345556665556776665 555677889999999998543
|
Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways. |
| >cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0043 Score=58.22 Aligned_cols=200 Identities=14% Similarity=0.099 Sum_probs=124.5
Q ss_pred EEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 37 IGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 37 IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
||+++|.. .........+++.+.++. |+.+.+ .++..++..-.+...++++ .++.++|....... ..+..
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~i~~l~~-~~~dgii~~~~~~~-~~~~~ 72 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYEN-----GYQMLL--MNTNFSIEKEIEALELLAR-QKVDGIILLATTIT-DEHRE 72 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHC-----CCEEEE--EeCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-HHHHH
Confidence 78888754 333456667777777653 566644 4555677666677777776 68888886433222 23445
Q ss_pred hhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC-C--CCCcchhHHHHHHH
Q 008863 116 IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V--YGGDSGKLALLAEA 192 (550)
Q Consensus 116 ~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~-~--~g~~~~~~~~l~~~ 192 (550)
.+...++|+|..... .+ ..+ .+.++....+..+++++...+-++++++.... . .. ....+.+++.
T Consensus 73 ~~~~~~ipvv~~~~~--~~-----~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~v~~~~~~~~~~--~~r~~gf~~~ 140 (259)
T cd01542 73 AIKKLNVPVVVVGQD--YP-----GIS---SVVYDDYGAGYELGEYLAQQGHKNIAYLGVSESDIAVG--ILRKQGYLDA 140 (259)
T ss_pred HHhcCCCCEEEEecc--CC-----CCC---EEEECcHHHHHHHHHHHHHcCCCcEEEEcCCcccchhH--HHHHHHHHHH
Confidence 556678999998754 21 223 35678888889999999888889999996432 2 22 4556788888
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC-CeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-SRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+++.+ ....... .... ........+.++.+.. ++.|+. .+...+..+++.+++.|+.-++-+.+.
T Consensus 141 ~~~~~-~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~i~~--~~d~~a~g~~~~l~~~g~~vp~di~v~ 206 (259)
T cd01542 141 LKEHG-ICPPNIV-ETDF-----SYESAYEAAQELLEPQPPDAIVC--ATDTIALGAMKYLQELGRRIPEDISVA 206 (259)
T ss_pred HHHcC-CChHHee-eccC-----chhhHHHHHHHHhcCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 98888 5111111 1111 1123334455554444 576665 456677789999999998644444444
|
Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh |
| >cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.011 Score=55.90 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=121.1
Q ss_pred EEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||+++|... ........+++.+.++. .|+.+. +.++..++..-.+...+++. .++.+|+= +.........
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~----~g~~~~--~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~ 73 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREASNY----PDVELI--IADAADDNSKQVADIENFIR-QGVDLLIISPNEAAPLTPV 73 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHhc----CCcEEE--EEcCCCCHHHHHHHHHHHHH-hCCCEEEEecCchhhchHH
Confidence 5899997532 22223334444333332 255664 44556677666666777776 47666553 3332222233
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+. . .+...+..++...+...++++... |-++++++.............+.+++
T Consensus 74 ~~~~~~~~ipvV~~~~~--~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~ 146 (270)
T cd06308 74 VEEAYRAGIPVILLDRK--ILS---D--KYTAYIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKE 146 (270)
T ss_pred HHHHHHCCCCEEEeCCC--CCC---c--cceEEeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHH
Confidence 34456789999987753 111 1 123346778888889999988774 88999999754432211445677888
Q ss_pred HHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 192 ALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 192 ~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
.+++. + +.+.... .... ...+....++++.+. +.+.|+ +.+...+..+++++++.|+. .+...+.-+
T Consensus 147 ~l~~~~~-~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~aI~--~~~d~~a~g~~~al~~~g~~-~dv~vvg~d 216 (270)
T cd06308 147 ALSKYPK-IKIVAQQ-DGDW-----LKEKAEEKMEELLQANPDIDLVY--AHNDPMALGAYLAAKRAGRE-KEIKFIGID 216 (270)
T ss_pred HHHHCCC-CEEEEec-CCCc-----cHHHHHHHHHHHHHhCCCCcEEE--eCCcHHHHHHHHHHHHcCCC-CCcEEEEec
Confidence 88888 7 7654321 1111 112223344444332 456554 46677777899999999987 444444433
|
Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail. |
| >cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0062 Score=57.37 Aligned_cols=201 Identities=12% Similarity=0.135 Sum_probs=119.8
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||++.|.. ...-.....+++-+.++. |+.+. +.+...++..-......++. .++.+|+-.........+
T Consensus 1 ~igvi~~~~~~~~~~~~~~~i~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~~dgiii~~~~~~~~~l- 71 (267)
T cd06283 1 LIGVIVADITNPFSSLVLKGIEDVCRAH-----GYQVL--VCNSDNDPEKEKEYLESLLA-YQVDGLIVNPTGNNKELY- 71 (267)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc-----CCEEE--EEcCCCCHHHHHHHHHHHHH-cCcCEEEEeCCCCChHHH-
Confidence 378899765 333345666777766654 45553 44555566555566666765 577766632211122223
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALLAEAL 193 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l~~~l 193 (550)
..+...++|+|..... .+. ...+ .+..+....+..++++|...|-++++++..... ........+.+.+.+
T Consensus 72 ~~~~~~~ipvV~~~~~--~~~---~~~~---~v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~~r~~g~~~~~ 143 (267)
T cd06283 72 QRLAKNGKPVVLVDRK--IPE---LGVD---TVTLDNYEAAKEAVDHLIEKGYERILFVTEPLDEISPRMERYEGFKEAL 143 (267)
T ss_pred HHHhcCCCCEEEEcCC--CCC---CCCC---EEEeccHHHHHHHHHHHHHcCCCcEEEEecCccccccHHHHHHHHHHHH
Confidence 3456779999998754 211 1223 345677788888999998889999999975433 111134567788888
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
++.+ ............. +..+....++++.++ .++.|+. .+...+..+++.+++.|+..+
T Consensus 144 ~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~~l~~~g~~vp 205 (267)
T cd06283 144 AEHG-IGVNEELIEIDDE----DADELDERLRQLLNKPKKKTAIFA--ANGLILLEVLKALKELGIRIP 205 (267)
T ss_pred HHcC-CCCCcceeEeccc----chHHHHHHHHHHHcCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCc
Confidence 8776 4322211111111 123445566666544 3566665 456667788999999998543
|
Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b |
| >cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0038 Score=58.98 Aligned_cols=201 Identities=11% Similarity=0.150 Sum_probs=114.8
Q ss_pred EEEEEEecC------CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 36 KIGAIVDAN------SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 36 ~IG~i~~~~------~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.||+++|.. ...-.....+++.+.++. |+.+.+. +... +..-.+.+.+++...++.+||-......
T Consensus 1 ~igli~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~--~~~~-~~~~~~~~~~~~~~~~~dgiii~~~~~~ 72 (270)
T cd06294 1 TIGVVLPPSADEAFQNPFFIEVLRGISAVANEN-----GYDISLA--TGKN-EEELLEEVKKMIQQKRVDGFILLYSRED 72 (270)
T ss_pred CEEEEeCCccccCcCCCCHHHHHHHHHHHHHHC-----CCEEEEe--cCCC-cHHHHHHHHHHHHHcCcCEEEEecCcCC
Confidence 378999852 223334455565555553 5666543 3332 3344555666665445666554221111
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
......+...++|+|..... .+. ....+ .+..+....++.+++.+...|.++++++.....+.......+.|
T Consensus 73 -~~~~~~~~~~~ipvV~~~~~--~~~--~~~~~---~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf 144 (270)
T cd06294 73 -DPIIDYLKEEKFPFVVIGKP--EDD--KENIT---YVDNDNIQAGYDATEYLIKLGHKKIAFVGGDLDLEVTQDRLQGY 144 (270)
T ss_pred -cHHHHHHHhcCCCEEEECCC--CCC--CCCCC---eEEECcHHHHHHHHHHHHHcCCccEEEecCCcccHHHHHHHHHH
Confidence 23334456789999998754 211 11222 35567777888888988877999999997544321114456778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+++.| +.+.......... ...+....+.++.+. .+++|+. .+...+..+++++++.|+.-
T Consensus 145 ~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~i 209 (270)
T cd06294 145 KQALEDHG-IPDRNEVIISLDF----SEEGGYKALKKLLEQHPRPTAIVA--TDDLLALGVLKVLNELGLKV 209 (270)
T ss_pred HHHHHHcC-CCCCcceEEecCC----chHHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 88898887 5322111111111 113334455555443 3566555 56678888999999999853
|
This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.011 Score=55.62 Aligned_cols=196 Identities=13% Similarity=0.141 Sum_probs=116.0
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
.||+++|.. ...-.....+++.+.++. |+.+.+...+ ..++..-.+....+++ .++.+++- +..... ..+
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~-~~~ 72 (264)
T cd01574 1 TIGVVTTDLALHGPSSTLAAIESAAREA-----GYAVTLSMLA-EADEEALRAAVRRLLA-QRVDGVIVNAPLDDA-DAA 72 (264)
T ss_pred CEEEEeCCCCcccHHHHHHHHHHHHHHC-----CCeEEEEeCC-CCchHHHHHHHHHHHh-cCCCEEEEeCCCCCh-HHH
Confidence 389999854 223344556666666553 5666554322 2233444455555655 57887763 322222 233
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
.. ....++|+|..... .+ ...+ .+..+....++.+++++...|-++++++..+..........+.+.+.+
T Consensus 73 ~~-~~~~~ipvv~~~~~--~~----~~~~---~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l 142 (264)
T cd01574 73 LA-AAPADVPVVFVDGS--PS----PRVS---TVSVDQEGGARLATEHLLELGHRTIAHVAGPEEWLSARARLAGWRAAL 142 (264)
T ss_pred HH-HHhcCCCEEEEecc--CC----CCCC---EEEeCcHHHHHHHHHHHHHCCCCEEEEEecCCccchHHHHHHHHHHHH
Confidence 33 34678999998754 11 1223 366788888999999998889999999976543211134557788888
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
...+ +.+.... .... ........++++.+. .++.|+. ++...+..+++++++.|..
T Consensus 143 ~~~~-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~ai~~--~~d~~a~g~~~~~~~~g~~ 199 (264)
T cd01574 143 EAAG-IAPPPVL--EGDW----SAESGYRAGRELLREGDPTAVFA--ANDQMALGVLRALHELGLR 199 (264)
T ss_pred HHCC-CCcceee--ecCC----CHHHHHHHHHHHHhCCCCcEEEE--cCcHHHHHHHHHHHHcCCC
Confidence 8777 6554222 1111 112333445555443 3566554 5666778899999999974
|
Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b |
| >cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0095 Score=56.07 Aligned_cols=207 Identities=12% Similarity=0.155 Sum_probs=117.4
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
.||+++|... ......+...+++.-+. .|+.+.+ .++..++..-.+....++. .++.+|+-.........+.
T Consensus 1 ~igvi~~~~~---~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~- 72 (264)
T cd06274 1 TIGLIIPDLE---NRSFARIAKRLEALARE-RGYQLLI--ACSDDDPETERETVETLIA-RQVDALIVAGSLPPDDPYY- 72 (264)
T ss_pred CEEEEecccc---CchHHHHHHHHHHHHHH-CCCEEEE--EeCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCchHHHH-
Confidence 3899998642 22333333333332222 2566544 4455566555566666666 5788766432222222233
Q ss_pred hhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhc
Q 008863 116 IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQN 195 (550)
Q Consensus 116 ~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~ 195 (550)
.+...++|+|..... .+ ....++ +..++...+..+++++...|-++++++.............+.+++.+.+
T Consensus 73 ~~~~~~ipvV~~~~~--~~---~~~~~~---V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 144 (264)
T cd06274 73 LCQKAGLPVVALDRP--GD---PSRFPS---VVSDNRDGAAELTRELLAAPPEEVLFLGGLPELSPSRERLAGFRQALAD 144 (264)
T ss_pred HHHhcCCCEEEecCc--cC---CCCCCE---EEEccHHHHHHHHHHHHHCCCCcEEEEeCCCcccchHHHHHHHHHHHHH
Confidence 456688999998754 21 112233 4567777778889988888999999997654311114567788888888
Q ss_pred CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 196 VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 196 ~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.+ +.+.......... +.......++++.+. .++.|+. .+...+..+++++++.|+.-++-+-+
T Consensus 145 ~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~ip~dv~v 210 (264)
T cd06274 145 AG-LPVQPDWIYAEGY----SPESGYQLMAELLARLGRLPRALFT--TSYTLLEGVLRFLRERPGLAPSDLRI 210 (264)
T ss_pred cC-CCCCcceeecCCC----ChHHHHHHHHHHHccCCCCCcEEEE--cChHHHHHHHHHHHHcCCCCCcceEE
Confidence 87 5432211111111 112333445554432 3566665 46667778999999999864333433
|
Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor |
| >cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.011 Score=55.72 Aligned_cols=198 Identities=10% Similarity=-0.049 Sum_probs=116.3
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||+++|.. ...-.....+++.+.++. |+.+.+...+...+...-.+....+++ .++.+||- +....... .
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiI~~~~~~~~~~-~ 73 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRL-----GVSLKLLEAGGYPNLAKQIAQLEDCAA-WGADAILLGAVSPDGLN-E 73 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHc-----CCEEEEecCCCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChhhHH-H
Confidence 589999864 223334555666666554 555554322222344445556666665 57877763 33322222 2
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCC-----eEEEEEEEcCCCCCcchhHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNW-----RRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w-----~~v~ii~~~~~~g~~~~~~~~ 188 (550)
...+...++|+|..... ... . .....+..+....++.++++|...+- ++++++.............+.
T Consensus 74 ~~~~~~~giPvV~~~~~--~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~R~~g 146 (268)
T cd06306 74 ILQQVAASIPVIALVND--INS---P--DITAKVGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVEKG 146 (268)
T ss_pred HHHHHHCCCCEEEeccC--CCC---c--ceeEEecCChHHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHHHHHH
Confidence 34456789999987543 111 1 12234677888888999999877665 899999764432111455677
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
+++.+++.+ +++... ..... +.......++++.+. ++++|+. . ...+..+++.+++.|+
T Consensus 147 ~~~~~~~~~-~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~~i~~-~--d~~a~~~~~~l~~~g~ 207 (268)
T cd06306 147 FRDALAGSA-IEISAI--KYGDT----GKEVQRKLVEEALEAHPDIDYIVG-S--AVAAEAAVGILRQRGL 207 (268)
T ss_pred HHHHHhhcC-cEEeee--ccCCc----cHHHHHHHHHHHHHhCCCcCEEee-c--chhhhHHHHHHHhcCC
Confidence 888898888 776442 11111 223334455555433 4566654 3 6667789999999997
|
TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport. |
| >cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.011 Score=55.97 Aligned_cols=201 Identities=15% Similarity=0.144 Sum_probs=119.1
Q ss_pred EEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCC-hH--HHH
Q 008863 37 IGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-MET-WE--ETA 111 (550)
Q Consensus 37 IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~-s~--~~~ 111 (550)
||+++|.. ...-.....+++.+.++. |+.+. +.++..++..-.+....+++ .++.++|= +.. .. ...
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~~ 73 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQY-----GYTVL--LCNTYRGGVSEADYVEDLLA-RGVRGVVFISSLHADTHADH 73 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHHH-cCCCEEEEeCCCCCcccchh
Confidence 79999864 333344556666655552 66664 34555566555566666766 57776663 211 11 112
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... .+. ....+ .+..++...+..++++|...|-++++++....+........+.+.+
T Consensus 74 ~~i~~~~~~~ipvV~i~~~--~~~--~~~~~---~V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~ 146 (273)
T cd06292 74 SHYERLAERGLPVVLVNGR--APP--PLKVP---HVSTDDALAMRLAVRHLVALGHRRIGFASGPGRTVPRRRKIAGFRA 146 (273)
T ss_pred HHHHHHHhCCCCEEEEcCC--CCC--CCCCC---EEEECcHHHHHHHHHHHHHCCCceEEEEeCCcccccHHHHHHHHHH
Confidence 2233456789999998754 221 11233 3567888899999999988899999999754332111455678888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.+ +.......+.... +.......++++.+..+++|+. .+...+..+++.+++.|+.-
T Consensus 147 ~~~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~ai~~--~~d~~a~g~~~~l~~~g~~i 207 (273)
T cd06292 147 ALEEAG-LEPPEALVARGMF----SVEGGQAAAVELLGSGPTAIVA--ASDLMALGAIRAARRRGLRV 207 (273)
T ss_pred HHHHcC-CCCChhheEeCCC----CHHHHHHHHHHHhcCCCCEEEE--cCcHHHHHHHHHHHHcCCCC
Confidence 888877 5322111111111 1123334455554444776665 56667778899999999753
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0073 Score=56.86 Aligned_cols=200 Identities=17% Similarity=0.156 Sum_probs=115.9
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||+++|.. ...-.....++..+.++. |+.+.+ .++..++..-.+....++. .++.+||-......... .
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~-~ 71 (265)
T cd06299 1 TIGVIVPDIRNPYFASLATAIQDAASAA-----GYSTII--GNSDENPETENRYLDNLLS-QRVDGIIVVPHEQSAEQ-L 71 (265)
T ss_pred CEEEEecCCCCccHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHh-cCCCEEEEcCCCCChHH-H
Confidence 489999864 333445666776666654 455544 3444566555555556665 57877764322222222 3
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
..+...++|+|..+.. .+. ...+++ ..+.......+++++...|-++++++.............+.+.+.++
T Consensus 72 ~~l~~~~ipvV~~~~~--~~~---~~~~~v---~~d~~~~~~~~~~~l~~~g~~~I~~i~~~~~~~~~~~R~~gf~~~~~ 143 (265)
T cd06299 72 EDLLKRGIPVVFVDRE--ITG---SPIPFV---TSDPQPGMTEAVSLLVALGHKKIGYISGPQDTSTGRERLEAFRQACA 143 (265)
T ss_pred HHHHhCCCCEEEEecc--cCC---CCCCEE---EECcHHHHHHHHHHHHHcCCCcEEEEeCCCCcccHHHHHHHHHHHHH
Confidence 4556679999988764 221 223443 34555566667778877799999999654321111445577888888
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+ ..+.......... ...+....++++.+..++.|+. ++...+..+++.+++.|+.-
T Consensus 144 ~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~av~~--~~d~~a~gv~~al~~~g~~v 201 (265)
T cd06299 144 SLG-LEVNEDLVVLGGY----SQESGYAGATKLLDQGATAIIA--GDSMMTIGAIRAIHDAGLVI 201 (265)
T ss_pred HCC-CCCChHhEEecCc----chHHHHHHHHHHHcCCCCEEEE--cCcHHHHHHHHHHHHhCCCC
Confidence 877 5432211111110 1123344556655545776655 55667788999999999853
|
This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans |
| >cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0078 Score=56.86 Aligned_cols=206 Identities=15% Similarity=0.099 Sum_probs=119.0
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||+++|.. ...-.....++.-+.++. |+.+.+. .+..++..-.+....+.+ .++.+||--.+......+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----gy~v~~~--~~~~~~~~~~~~i~~~~~-~~~dgiii~~~~~~~~~~~ 72 (269)
T cd06293 1 TIGLVVPDIANPFFAELADAVEEEADAR-----GLSLVLC--ATRNRPERELTYLRWLDT-NHVDGLIFVTNRPDDGALA 72 (269)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHHHHHC-----CCEEEEE--eCCCCHHHHHHHHHHHHH-CCCCEEEEeCCCCCHHHHH
Confidence 489999854 333344555555555543 6666544 344455544445555554 6788777532221222233
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
.+. ..++|+|..... .+. ...+ .+.+++...+..++++|...|-+++++|.............+.+++.++
T Consensus 73 ~~~-~~~~pvV~i~~~--~~~---~~~~---~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~ 143 (269)
T cd06293 73 KLI-NSYGNIVLVDED--VPG---AKVP---KVFCDNEQGGRLATRHLARAGHRRIAFVGGPDALISARERYAGYREALA 143 (269)
T ss_pred HHH-hcCCCEEEECCC--CCC---CCCC---EEEECCHHHHHHHHHHHHHCCCceEEEEecCcccccHHHHHHHHHHHHH
Confidence 333 357999997754 221 1123 3668888999999999988899999999754332111345688889998
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
+.+ ..+.......... ........+.++.+. .++.|+. ++...+..+++.+++.|..-++-+-|
T Consensus 144 ~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vp~di~i 209 (269)
T cd06293 144 EAH-IPEVPEYVCFGDY----TREFGRAAAAQLLARGDPPTAIFA--ASDEIAIGLLEVLRERGLSIPGDMSL 209 (269)
T ss_pred HcC-CCCChheEEecCC----CHHHHHHHHHHHHcCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCccceEE
Confidence 887 5432111111111 122333455555433 4676665 56667778999999999754333333
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.016 Score=55.39 Aligned_cols=213 Identities=12% Similarity=0.066 Sum_probs=119.4
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||+++|.. ..+-.....+++.+.++. |+.+. ++++. ++..-.+...+++. .++.+||= +..+.....+
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~-~~~~~~~~i~~~~~-~~~dgiii~~~~~~~~~~~ 71 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEK-----GFTVV--KIDVP-DGEKVLSAIDNLGA-QGAKGFVICVPDVKLGPAI 71 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHHc-----CCEEE--EccCC-CHHHHHHHHHHHHH-cCCCEEEEccCchhhhHHH
Confidence 588888754 223345556666666653 55654 44555 66555566666665 57776664 2222333445
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH----HcCC--eEEEEEEE-cC--CCCCcch
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR----KYNW--RRVAAIYE-DN--VYGGDSG 184 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~----~~~w--~~v~ii~~-~~--~~g~~~~ 184 (550)
...+...++|+|..... .+..+....+.+-.+..+....+...++++. ..|+ +++++|.. .. ... ..
T Consensus 72 ~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~g~~~~~i~~i~~~~~~~~~~--~~ 147 (289)
T cd01540 72 VAKAKAYNMKVVAVDDR--LVDADGKPMEDVPHVGMSATKIGEQVGEAIADEMKKRGWDPKEVGALRITYDELDTA--KP 147 (289)
T ss_pred HHHHHhCCCeEEEecCC--CcccCCCccccceEecCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCcch--hh
Confidence 55677899999997654 2211100011223356677777777666554 3577 68888753 22 233 55
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeE-EEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRV-FIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~-ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
..+.+++.+++.| +............ .+.......++++... ..+. .++ +.+...+..++.++++.|+...+
T Consensus 148 R~~G~~~~l~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~d~~a~g~~~al~~~g~~~~d 222 (289)
T cd01540 148 RTDGALEALKAPG-FPEANIFQAPQKT---TDTEGAFDAAASTLTKNPNVKNWIIY-GLNDETVLGAVRATEQSGIAAAD 222 (289)
T ss_pred HHHHHHHHHhcCC-CCcceEecccccC---cchhhHHHHHHHHHHhCCCcCeeEEE-eCCcHHHHHHHHHHHHcCCCCcc
Confidence 6788888998877 5432211111110 0112223345555443 3343 455 67777788899999999987544
Q ss_pred EEEEE
Q 008863 262 SVWIV 266 (550)
Q Consensus 262 ~~~i~ 266 (550)
...+.
T Consensus 223 i~vig 227 (289)
T cd01540 223 VIGVG 227 (289)
T ss_pred eEEEe
Confidence 43443
|
Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a |
| >PRK10355 xylF D-xylose transporter subunit XylF; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.042 Score=53.67 Aligned_cols=202 Identities=9% Similarity=-0.004 Sum_probs=118.0
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
+..+||++.+.. +........+++.++++. |+.+.+ .++..++..-.+....+++ .++.+||= +......
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~-----g~~l~i--~~~~~~~~~~~~~i~~l~~-~~vDGiIi~~~~~~~~ 95 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESL-----GAKVFV--QSANGNEETQMSQIENMIN-RGVDVLVIIPYNGQVL 95 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHc-----CCEEEE--ECCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhH
Confidence 479999999855 333445555665555543 555554 5666677666666667766 57877764 3222222
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC---CCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV---YGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~---~g~~~~~~~ 187 (550)
......+...++|+|..... .+. . +....+.++....++.++++|...+.++++++..... .. ....+
T Consensus 96 ~~~l~~~~~~~iPvV~id~~--~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~g~~~i~~i~~g~~~~~~~--~~R~~ 166 (330)
T PRK10355 96 SNVIKEAKQEGIKVLAYDRM--INN---A--DIDFYISFDNEKVGELQAKALVDKVPQGNYFLMGGSPVDNNA--KLFRA 166 (330)
T ss_pred HHHHHHHHHCCCeEEEECCC--CCC---C--CccEEEecCHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCccH--HHHHH
Confidence 33345566778999997654 111 1 1122577889999999999998778788776653221 22 34456
Q ss_pred HHHHHHhcC---CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc---CCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 188 LLAEALQNV---SSSEIQSRLVLPPISSISDPKEAVRGELKKVQD---KQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 188 ~l~~~l~~~---g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~---~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+++.+++. +.+.+......... ...+....++++.+ ..++.|+ +.+...+..+++.+++.|+.
T Consensus 167 gf~~~l~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~lL~~~~~~~~aI~--~~nD~~A~g~l~al~~~g~~ 236 (330)
T PRK10355 167 GQMKVLKPYIDSGKIKVVGDQWVDGW-----LPENALKIMENALTANNNKIDAVV--ASNDATAGGAIQALSAQGLS 236 (330)
T ss_pred HHHHHHhhhccCCCeEEecccCCCCC-----CHHHHHHHHHHHHHhCCCCccEEE--ECCCchHHHHHHHHHHCCCC
Confidence 677777653 20332111111110 12233344555432 2356555 46677777899999999986
|
|
| >cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.014 Score=56.30 Aligned_cols=205 Identities=13% Similarity=0.094 Sum_probs=118.1
Q ss_pred EEEEEecC-C-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcC--CeEEEEcCCChHHHHH
Q 008863 37 IGAIVDAN-S-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE--KVKVIAGMETWEETAV 112 (550)
Q Consensus 37 IG~i~~~~-~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~--~v~aiiG~~~s~~~~~ 112 (550)
||+++|.. . .+-.....+++.+.++. |+.+.+ .++..+...-......+++ . ++.+||=.........
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~~-----g~~v~~--~~~~~~~~~~~~~i~~~~~-~~~~vdgiIi~~~~~~~~~ 73 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADDL-----GIELEV--LYAERDRFLMLQQARTILQ-RPDKPDALIFTNEKSVAPE 73 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHhc-----CCeEEE--EeCCCCHHHHHHHHHHHHH-hccCCCEEEEcCCccchHH
Confidence 78888764 2 22334445565555543 566554 3555566666666667775 5 7877663222222333
Q ss_pred HHHhhccCCccEEeccCCCCCCccc-------CCC-CCeEEEEecCcHHhHHHHHHHHHHcCCeE--------EEEEEEc
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSM-------SRR-WPYLIRMASNDSEQMKCIADLARKYNWRR--------VAAIYED 176 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~-------~~~-~~~~~~~~p~~~~~~~al~~~l~~~~w~~--------v~ii~~~ 176 (550)
....+...++|+|..... .+... ... .+++-.+.++....++.+++.|...+.++ ++++...
T Consensus 74 ~~~~~~~~giPvV~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~g~~~i~~i~~~ 151 (305)
T cd06324 74 LLRLAEGAGVKLFLVNSG--LTEAQARELGPPREKFPDWLGQLLPNDEEAGYLMAEALISQARSVQAPGGRIDLLAISGD 151 (305)
T ss_pred HHHHHHhCCCeEEEEecC--CCcchhhcccccccccCceeeeeccCcHHHHHHHHHHHHHHhhcccCCCCceeEEEEeCC
Confidence 445667789999988754 22211 011 12345677888899999999987776664 7767643
Q ss_pred CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHH
Q 008863 177 NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANR 254 (550)
Q Consensus 177 ~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~ 254 (550)
..........+.+++.+++.|...+... +.... ........++++.+. +.+.|+ +.+...+..+++++++
T Consensus 152 ~~~~~~~~R~~Gf~~~~~~~g~~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~A~g~~~al~~ 223 (305)
T cd06324 152 PTTPAAILREAGLRRALAEHPDVRLRQV--VYAGW----SEDEAYEQAENLLKRYPDVRLIW--AANDQMAFGALRAAKE 223 (305)
T ss_pred CCChHHHHHHHHHHHHHHHCCCceEeee--ecCCC----CHHHHHHHHHHHHHHCCCccEEE--ECCchHHHHHHHHHHH
Confidence 3211114456678888887751333221 11111 223334455555433 456554 4566777889999999
Q ss_pred cCCCC
Q 008863 255 MGLVG 259 (550)
Q Consensus 255 ~g~~~ 259 (550)
.|+.-
T Consensus 224 ~g~~v 228 (305)
T cd06324 224 AGRKP 228 (305)
T ss_pred cCCCc
Confidence 99863
|
This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >PRK10014 DNA-binding transcriptional repressor MalI; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.01 Score=58.31 Aligned_cols=204 Identities=12% Similarity=0.091 Sum_probs=118.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
..-.||+++|.. ..+......++..+.++. |+.+-+ .++..++....+....++. .++.+||-........
T Consensus 63 ~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~ 134 (342)
T PRK10014 63 QSGVIGLIVRDLSAPFYAELTAGLTEALEAQ-----GRMVFL--LQGGKDGEQLAQRFSTLLN-QGVDGVVIAGAAGSSD 134 (342)
T ss_pred CCCEEEEEeCCCccchHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCcH
Confidence 457899999853 223334445555554432 555543 3444555544455555554 5777766322122223
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... .+ ....++ +..+....+..++++|...|.+++++|..+..........+.+.+
T Consensus 135 ~~~~~l~~~~iPvV~~~~~--~~---~~~~~~---V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~ 206 (342)
T PRK10014 135 DLREMAEEKGIPVVFASRA--SY---LDDVDT---VRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCA 206 (342)
T ss_pred HHHHHHhhcCCCEEEEecC--CC---CCCCCE---EEeCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccHHHHHHHHHH
Confidence 4445566789999987643 11 112233 567888888889999988899999999754332101345677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+.....+.... ........++++.+. .++.|+ +.+...+..+++.+.+.|+.-
T Consensus 207 al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~nd~~A~g~~~~l~~~g~~v 269 (342)
T PRK10014 207 TLLKFG-LPFHSEWVLECTS----SQKQAAEAITALLRHNPTISAVV--CYNETIAMGAWFGLLRAGRQS 269 (342)
T ss_pred HHHHcC-CCCCcceEecCCC----ChHHHHHHHHHHHcCCCCCCEEE--ECCcHHHHHHHHHHHHcCCCC
Confidence 898888 6543221111111 112233445555443 355555 466677778899999998753
|
|
| >cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.011 Score=55.64 Aligned_cols=202 Identities=14% Similarity=0.127 Sum_probs=120.5
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~v 113 (550)
.||+++|.. ...-.....++..+.++. |+.+. +.++..++..-.+....+++ .++.+|+ .+... ....
T Consensus 1 ~igvi~p~~~~~~~~~~~~gi~~~~~~~-----~~~~~--~~~~~~~~~~~~~~i~~l~~-~~~dgiii~~~~~-~~~~- 70 (265)
T cd06285 1 TIGVLVPRLTDTVMATMYEGIEEAAAER-----GYSTF--VANTGDNPDAQRRAIEMLLD-RRVDGLILGDARS-DDHF- 70 (265)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCCC-ChHH-
Confidence 389999864 233334445555555543 56653 44555566555555556665 5777666 33222 2222
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l~~ 191 (550)
...+...++|++..... .+ ..++ +..+....+..++++|...|-++++++..+.. .. ....+.+.+
T Consensus 71 ~~~~~~~~iPvv~~~~~--~~-----~~~~---V~~d~~~ag~~a~~~L~~~g~~~i~~i~~~~~~~~~--~~R~~Gf~~ 138 (265)
T cd06285 71 LDELTRRGVPFVLVLRH--AG-----TSPA---VTGDDVLGGRLATRHLLDLGHRRIAVLAGPDYASTA--RDRLAGFRA 138 (265)
T ss_pred HHHHHHcCCCEEEEccC--CC-----CCCE---EEeCcHHHHHHHHHHHHHCCCccEEEEeCCcccccH--HHHHHHHHH
Confidence 34456679999987754 21 2233 56678888888999998889999999986543 23 556777888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC-CCEEEEE
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIV 266 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~-~~~~~i~ 266 (550)
.+++.| +.+.....+.... +.......++++.+. .++.|+. .+...+..+++.+++.|+.- ++...+.
T Consensus 139 ~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~~l~~~g~~~p~di~iig 209 (265)
T cd06285 139 ALAEAG-IEVPPERIVYSGF----DIEGGEAAAEKLLRSDSPPTAIFA--VNDFAAIGVMGAARDRGLRVPDDVALVG 209 (265)
T ss_pred HHHHcC-CCCChhhEEeCCC----CHHHHHHHHHHHHcCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCCcceEEEe
Confidence 888888 6543211111111 112333455555433 4566554 56667788999999999853 3333443
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0068 Score=57.24 Aligned_cols=207 Identities=12% Similarity=0.075 Sum_probs=120.3
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
.||++.|.. ..+-.....+++.+.++. |+.+.+ .++..++..-.+....++. .++.+|+- +.... . ..
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~i~~l~~-~~~dgiii~~~~~~-~-~~ 70 (270)
T cd06296 1 LIGLVFPDLDSPWASEVLRGVEEAAAAA-----GYDVVL--SESGRRTSPERQWVERLSA-RRTDGVILVTPELT-S-AQ 70 (270)
T ss_pred CeEEEECCCCCccHHHHHHHHHHHHHHc-----CCeEEE--ecCCCchHHHHHHHHHHHH-cCCCEEEEecCCCC-h-HH
Confidence 378898764 334455556666665552 555544 4444555444445555665 57777653 32222 2 23
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
...+...++|+|..... ... ....+ .+.++....+...++.+...|.++++++.............+.|.+.+
T Consensus 71 ~~~~~~~~ipvV~i~~~--~~~--~~~~~---~v~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~ 143 (270)
T cd06296 71 RAALRRTGIPFVVVDPA--GDP--DADVP---SVGATNWAGGLAATEHLLELGHRRIGFITGPPDLLCSRARLDGYRAAL 143 (270)
T ss_pred HHHHhcCCCCEEEEecc--cCC--CCCCC---EEEeCcHHHHHHHHHHHHHcCCCcEEEEcCCCcchhHHHHHHHHHHHH
Confidence 45567789999998754 111 11223 367788888888999988889999999976432111145667788888
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC-CCEEEEE
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIV 266 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~-~~~~~i~ 266 (550)
++.+ +.+.......... ..+.....++++.+. .+++|+. .+...+..+++.+++.|+.- .+...+.
T Consensus 144 ~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~~~~~~l~~~g~~~p~~i~v~~ 212 (270)
T cd06296 144 AEAG-IPVDPALVREGDF----STESGFRAAAELLALPERPTAIFA--GNDLMALGVYEAARERGLRIPEDLSVVG 212 (270)
T ss_pred HHcC-CCCChHHheeCCC----CHHHHHHHHHHHHhCCCCCcEEEE--cCcHHHHHHHHHHHHhCCCCCCceEEEE
Confidence 8877 5443211111110 122333445555433 4555554 56666778999999999753 3333443
|
This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0082 Score=56.50 Aligned_cols=193 Identities=17% Similarity=0.130 Sum_probs=112.3
Q ss_pred EEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 37 IGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 37 IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
||+++|.. ...-.....++.-+.++. |+.+.+...+. +. ...+...+++. .++.+++-..+..... ...
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~-----g~~~~~~~~~~--~~-~~~~~i~~~~~-~~vdgiii~~~~~~~~-~~~ 71 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQAR-----GYQPLLINTDD--DE-DLDAALRQLLQ-YRVDGVIVTSGTLSSE-LAE 71 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHC-----CCeEEEEcCCC--CH-HHHHHHHHHHH-cCCCEEEEecCCCCHH-HHH
Confidence 78898764 223334445554444432 67766554443 33 33344555665 5787777432222222 345
Q ss_pred hhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhc
Q 008863 116 IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQN 195 (550)
Q Consensus 116 ~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~ 195 (550)
.+...++|+|..... .+. +.+..+.++....+..+++++...|-++++++..+..........+.+.+.+++
T Consensus 72 ~~~~~~ipvV~~~~~--~~~------~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 143 (266)
T cd06278 72 ECRRNGIPVVLINRY--VDG------PGVDAVCSDNYEAGRLAAELLLAKGCRRIAFIGGPADTSTSRERERGFRDALAA 143 (266)
T ss_pred HHhhcCCCEEEECCc--cCC------CCCCEEEEChHHHHHHHHHHHHHCCCceEEEEcCCCcccchHHHHHHHHHHHHH
Confidence 566789999998754 221 122346788888999999999888999999998654321114566788888888
Q ss_pred CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcC
Q 008863 196 VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMG 256 (550)
Q Consensus 196 ~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g 256 (550)
.+ ..+.... .... ...+....+.++.+. .+++|+. .+...+..+++.+++.+
T Consensus 144 ~~-~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~i~~--~~~~~a~~~~~~l~~~~ 197 (266)
T cd06278 144 AG-VPVVVEE-AGDY-----SYEGGYEAARRLLASRPRPDAIFC--ANDLLAIGVMDAARQEG 197 (266)
T ss_pred cC-CChhhhc-cCCC-----CHHHHHHHHHHHHhcCCCCCEEEE--cCcHHHHHHHHHHHHhc
Confidence 88 6532211 1111 112333444554433 4566665 45556667888888753
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0053 Score=58.04 Aligned_cols=199 Identities=12% Similarity=0.104 Sum_probs=119.3
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||+++|.. ...-.....+++.++++. |+.+ .+.++..++....+....+++ .++.+||--.+......+.
T Consensus 1 ~Igvv~~~~~~~~~~~~~~~i~~~a~~~-----g~~~--~~~~~~~~~~~~~~~i~~l~~-~~vdgii~~~~~~~~~~~~ 72 (269)
T cd06281 1 TIGCLVSDITNPLLAQLFSGAEDRLRAA-----GYSL--LIANSLNDPERELEILRSFEQ-RRMDGIIIAPGDERDPELV 72 (269)
T ss_pred CEEEEecCCccccHHHHHHHHHHHHHHc-----CCEE--EEEeCCCChHHHHHHHHHHHH-cCCCEEEEecCCCCcHHHH
Confidence 489999854 334455666776666663 5554 345666677655666666665 5777777422222223445
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
..+...++|+|..... .+ ...++ +..+....+..+++++...|-++++++.............+.+.+.++
T Consensus 73 ~~~~~~~ipvV~i~~~--~~----~~~~~---V~~d~~~~g~~a~~~l~~~G~~~i~~l~~~~~~~~~~~R~~Gf~~~~~ 143 (269)
T cd06281 73 DALASLDLPIVLLDRD--MG----GGADA---VLFDHAAGMRQAVEYLISLGHRRIALVGGGSNTRPGRERLEGYKAAFA 143 (269)
T ss_pred HHHHhCCCCEEEEecc--cC----CCCCE---EEECcHHHHHHHHHHHHHCCCcEEEEecCccccccHHHHHHHHHHHHH
Confidence 5666789999998765 22 12233 456666677778888877799999999764332111445677888888
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
..| +.+......... ....-...+.++.+. .++.|+. .+...+..+++++.+.|+.-
T Consensus 144 ~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~~l~~~g~~i 202 (269)
T cd06281 144 AAG-LPPDPALVRLST-----PAASGFDATRALLALPDRPTAIIA--GGTQVLVGVLRALREAGLRI 202 (269)
T ss_pred HcC-CCCCHHHeecCc-----HHHHHHHHHHHHHcCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCC
Confidence 888 654211111110 112223445555432 4677665 45556668999999999853
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK10703 DNA-binding transcriptional repressor PurR; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.015 Score=57.24 Aligned_cols=202 Identities=12% Similarity=0.109 Sum_probs=117.2
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-+||+++|.. ...-.....+++.+.++. |+.+. +.++..++..-.+....++. .++.+||-........
T Consensus 58 ~~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~ 129 (341)
T PRK10703 58 HTKSIGLLATSSEAPYFAEIIEAVEKNCYQK-----GYTLI--LCNAWNNLEKQRAYLSMLAQ-KRVDGLLVMCSEYPEP 129 (341)
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHHH-cCCCEEEEecCCCCHH
Confidence 446899999875 223334555665555543 45543 44555666655556666665 5777765321111122
Q ss_pred HHHHhhcc-CCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHH
Q 008863 112 VVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~-~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~ 188 (550)
.+ ..+.. .++|+|..... .+. ..+.. .+.++....+...++.|...|-+++++|..... .. ....+.
T Consensus 130 ~~-~~l~~~~~iPvV~~d~~--~~~---~~~~~--~v~~d~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~G 199 (341)
T PRK10703 130 LL-AMLEEYRHIPMVVMDWG--EAK---ADFTD--AIIDNAFEGGYLAGRYLIERGHRDIGVIPGPLERNTG--AGRLAG 199 (341)
T ss_pred HH-HHHHhcCCCCEEEEecc--cCC---cCCCC--eEEECcHHHHHHHHHHHHHCCCCcEEEEeCCccccch--HHHHHH
Confidence 23 33444 69999987654 211 11111 245565667788888887779999999965332 22 455678
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
|.+.+++.| +.+.......... ...+....++++.+. .++.|+. ++...+..++.++.+.|..-
T Consensus 200 f~~~l~~~g-i~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nd~~a~g~~~al~~~g~~i 265 (341)
T PRK10703 200 FMKAMEEAN-IKVPEEWIVQGDF----EPESGYEAMQQILSQKHRPTAVFC--GGDIMAMGAICAADEMGLRV 265 (341)
T ss_pred HHHHHHHcC-CCCChHHeEeCCC----CHHHHHHHHHHHHhCCCCCCEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 888998888 7543221111110 123334455555443 4566665 56666778999999999753
|
|
| >PRK15408 autoinducer 2-binding protein lsrB; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.058 Score=52.70 Aligned_cols=201 Identities=9% Similarity=0.009 Sum_probs=111.2
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~ 112 (550)
.+|+++.... ..+-.....+++.+.++. |+++.+. ..+..+...-.+....++. +++.+|+- |..+....+
T Consensus 24 ~~i~~v~k~~~~pf~~~~~~Gi~~aa~~~-----G~~v~~~-~~~~~d~~~q~~~i~~li~-~~vdgIiv~~~d~~al~~ 96 (336)
T PRK15408 24 ERIAFIPKLVGVGFFTSGGNGAKEAGKEL-----GVDVTYD-GPTEPSVSGQVQLINNFVN-QGYNAIIVSAVSPDGLCP 96 (336)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHHh-----CCEEEEE-CCCCCCHHHHHHHHHHHHH-cCCCEEEEecCCHHHHHH
Confidence 4799888654 233334556666666554 5666542 2344566655677778886 58877764 555554456
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEec-CcHHhHHHHHHHHHH-c--CCeEEEEEEEcCCCCCcchhHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMAS-NDSEQMKCIADLARK-Y--NWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~al~~~l~~-~--~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
....+...+||+|..... .+.. . . .+.+.. ++...+..+++++.+ . +-.+++++.............+.
T Consensus 97 ~l~~a~~~gIpVV~~d~~--~~~~---~-~-~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~~g 169 (336)
T PRK15408 97 ALKRAMQRGVKVLTWDSD--TKPE---C-R-SYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWVKE 169 (336)
T ss_pred HHHHHHHCCCeEEEeCCC--CCCc---c-c-eEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHHHH
Confidence 666677889999998765 2211 1 1 122222 234567667777754 3 34688888754321111334456
Q ss_pred HHHHHhc--CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQN--VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~--~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+.+.+.+ .+ ++++... .... +...-....+.+.+.. .+.|+. . +...+...++++++.|+.
T Consensus 170 ~~~~l~~~~p~-~~vv~~~-~~~~-----d~~~a~~~~~~lL~~~pdi~aI~~-~-~~~~~~Ga~~Al~~~g~~ 234 (336)
T PRK15408 170 AKAKIAKEHPG-WEIVTTQ-FGYN-----DATKSLQTAEGILKAYPDLDAIIA-P-DANALPAAAQAAENLKRD 234 (336)
T ss_pred HHHHHHhhCCC-CEEEeec-CCCC-----cHHHHHHHHHHHHHHCCCCcEEEE-C-CCccHHHHHHHHHhCCCC
Confidence 6666643 34 5554321 1111 2223334555555544 455554 3 444445678888888864
|
|
| >PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0079 Score=57.65 Aligned_cols=185 Identities=13% Similarity=0.245 Sum_probs=108.5
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
+||++...+...-....+||+-++++..-. . ..+++.+.+...|+....+.+.++.. .++..|+-. ....+..+..
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~-~-~~~~~~~~~a~~d~~~~~~~~~~l~~-~~~DlIi~~-gt~aa~~~~~ 76 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKELGYD-E-KNVEIEYKNAEGDPEKLRQIARKLKA-QKPDLIIAI-GTPAAQALAK 76 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHTT---C-CCEEEEEEE-TT-HHHHHHHHHHHCC-TS-SEEEEE-SHHHHHHHHH
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHcCCc-c-ccEEEEEecCCCCHHHHHHHHHHHhc-CCCCEEEEe-CcHHHHHHHH
Confidence 688888877554556778887777765332 2 46788888999999888888887765 577777743 3445555555
Q ss_pred hhccCCccEEeccCCCCCCccc----CCCC--CeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCC-CCcchhH
Q 008863 116 IASRVQVPILSFAAPAVTPLSM----SRRW--PYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVY-GGDSGKL 186 (550)
Q Consensus 116 ~~~~~~iP~is~~~~~~~~~~~----~~~~--~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~-g~~~~~~ 186 (550)
..... +|+|-.+.+ +|... .... .++.-+. .........++++++ +-++++++|+++.- + ....
T Consensus 77 ~~~~~-iPVVf~~V~--dp~~~~l~~~~~~~~~nvTGv~--~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~--~~~~ 149 (294)
T PF04392_consen 77 HLKDD-IPVVFCGVS--DPVGAGLVDSLDRPGKNVTGVS--ERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNS--VAQI 149 (294)
T ss_dssp H-SS--S-EEEECES---TTTTTS-S-SSS--SSEEEEE--E---HHHHHHHHHHHSTT--EEEEEEETT-HHH--HHHH
T ss_pred hcCCC-cEEEEEecc--ChhhhhccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEecCCCccH--HHHH
Confidence 44433 999887775 55421 1122 2443333 334555666667663 57999999987652 3 4567
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCH
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL 242 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~ 242 (550)
+.+++.+++.| +++.... ++ +..++...++.+.+ +.+++++ ..+.
T Consensus 150 ~~~~~~a~~~g-~~l~~~~-v~-------~~~~~~~~~~~l~~-~~da~~~-~~~~ 194 (294)
T PF04392_consen 150 EQLRKAAKKLG-IELVEIP-VP-------SSEDLEQALEALAE-KVDALYL-LPDN 194 (294)
T ss_dssp HHHHHHHHHTT--EEEEEE-ES-------SGGGHHHHHHHHCT-T-SEEEE--S-H
T ss_pred HHHHHHHHHcC-CEEEEEe-cC-------cHhHHHHHHHHhhc-cCCEEEE-ECCc
Confidence 78888889999 8876543 32 23577778887754 6688887 5544
|
ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A. |
| >PRK11303 DNA-binding transcriptional regulator FruR; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.025 Score=55.25 Aligned_cols=200 Identities=12% Similarity=0.094 Sum_probs=117.5
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
.+-.||+++|.. ...-.....+++.+.++ .|+.+.+. .+..++..-.+....++. .++.+||- +......
T Consensus 60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~-----~g~~~~~~--~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~ 131 (328)
T PRK11303 60 RTRSIGLIIPDLENTSYARIAKYLERQARQ-----RGYQLLIA--CSDDQPDNEMRCAEHLLQ-RQVDALIVSTSLPPEH 131 (328)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHH-----cCCEEEEE--eCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCCCCh
Confidence 457899999853 22223344555555544 26666553 344455444444555554 57887764 2222122
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~ 188 (550)
..+. .+...++|+|..... .+ ...+++ +..++...+..++++|...|-++++++..... .. ....+.
T Consensus 132 ~~~~-~l~~~~iPvV~v~~~--~~---~~~~~~---V~~d~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~--~~R~~G 200 (328)
T PRK11303 132 PFYQ-RLQNDGLPIIALDRA--LD---REHFTS---VVSDDQDDAEMLAESLLKFPAESILLLGALPELSVS--FEREQG 200 (328)
T ss_pred HHHH-HHHhcCCCEEEECCC--CC---CCCCCE---EEeCCHHHHHHHHHHHHHCCCCeEEEEeCccccccH--HHHHHH
Confidence 2233 344679999987654 11 122233 45677778888899988889999999976433 23 456678
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
|.+.+++.| +.+.... .... +..+-...++++.+. .++.|+. .+...+..+++++.+.|+.-+
T Consensus 201 f~~al~~~g-~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP 265 (328)
T PRK11303 201 FRQALKDDP-REVHYLY-ANSF-----EREAGAQLFEKWLETHPMPDALFT--TSYTLLQGVLDVLLERPGELP 265 (328)
T ss_pred HHHHHHHcC-CCceEEE-eCCC-----ChHHHHHHHHHHHcCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCC
Confidence 889999888 6543211 1111 112333445555443 4666665 455667788999999998533
|
|
| >cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.041 Score=52.74 Aligned_cols=205 Identities=10% Similarity=0.000 Sum_probs=113.5
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v~ 114 (550)
|||+++|... ..+...+..++++.-.+ .|+++.+. .++..++..-.+....++. .++.+||= +..........
T Consensus 1 ~i~~i~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~-~~~~~~~~~~~~~l~~~~~-~~~dgiii~~~~~~~~~~~i 74 (294)
T cd06316 1 KAAIVMHTSG---SDWSNAQVRGAKDEFAK-LGIEVVAT-TDAQFDPAKQVADIETTIS-QKPDIIISIPVDPVSTAAAY 74 (294)
T ss_pred CeEEEecCCC---ChHHHHHHHHHHHHHHH-cCCEEEEe-cCCCCCHHHHHHHHHHHHH-hCCCEEEEcCCCchhhhHHH
Confidence 6899997532 22333333333332222 26666533 3556677666666677776 47776553 43322223344
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
..+...++|+|..... .+.... ...++..+..+....+..++++|... +-++++++..+.+........+.+.+.
T Consensus 75 ~~~~~~~iPvV~~~~~--~~~~~~-~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~ 151 (294)
T cd06316 75 KKVAEAGIKLVFMDNV--PSGLEH-GKDYAGIVTDDNYGNGQIAADALAKALPGKGKVGLIYHGADYFVTNQRDQGFKET 151 (294)
T ss_pred HHHHHcCCcEEEecCC--Cccccc-CcceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCcccHHHHHHHHHHH
Confidence 4566789999987754 221111 11233446677777888889988665 789999997644321113445777777
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
+++.+ ..+......... ........++++.+. .++.|+. .+...+..+++.+++.|+
T Consensus 152 l~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~~l~~~g~ 210 (294)
T cd06316 152 IKKNY-PDITIVAEKGID-----GPSKAEDIANAMLTQNPDLKGIYA--VWDVPAEGVIAALRAAGR 210 (294)
T ss_pred HHHhC-CCcEEEeecCCc-----chhHHHHHHHHHHHhCCCeeEEEe--CCCchhHHHHHHHHHcCC
Confidence 77554 322211111110 112223344554433 4555554 556678899999999997
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >smart00062 PBPb Bacterial periplasmic substrate-binding proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00017 Score=65.24 Aligned_cols=75 Identities=17% Similarity=0.342 Sum_probs=60.5
Q ss_pred eEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEee
Q 008863 455 MRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYH 534 (550)
Q Consensus 455 ~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~ 534 (550)
+++..+ ..+.||.+...+. .+.||++|+++.+.+.+|++ +++++. .|+.++..|.+|++|++++
T Consensus 2 l~v~~~--~~~~p~~~~~~~g----------~~~G~~~~~~~~~~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~~~ 65 (219)
T smart00062 2 LRVGTN--GDYPPFSFADEDG----------ELTGFDVDLAKAIAKELGLK--VEFVEV--SFDNLLTALKSGKIDVVAA 65 (219)
T ss_pred EEEEec--CCCCCcEEECCCC----------CcccchHHHHHHHHHHhCCe--EEEEec--cHHHHHHHHHCCcccEEec
Confidence 456653 3568888764332 58899999999999999988 777775 7999999999999999999
Q ss_pred ceeeeeeeeeE
Q 008863 535 DKLLFKKKKRL 545 (550)
Q Consensus 535 ~~ti~~~r~~~ 545 (550)
....+.+|+..
T Consensus 66 ~~~~~~~~~~~ 76 (219)
T smart00062 66 GMTITPERAKQ 76 (219)
T ss_pred cccCCHHHHhh
Confidence 88777777653
|
bacterial proteins, eukaryotic ones are in PBPe |
| >cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.014 Score=54.97 Aligned_cols=199 Identities=14% Similarity=0.101 Sum_probs=112.0
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||+++|.. ...-.....+++.+.++ .|+.+.+ .++..++..-.+....+++ .++.++|-..+......+.
T Consensus 1 ~i~vi~~~~~~~~~~~~~~gi~~~~~~-----~gy~~~~--~~~~~~~~~~~~~i~~l~~-~~~dgiii~~~~~~~~~~~ 72 (265)
T cd06290 1 TIGVLTQDFASPFYGRILKGMERGLNG-----SGYSPII--ATGHWNQSRELEALELLKS-RRVDALILLGGDLPEEEIL 72 (265)
T ss_pred CEEEEECCCCCchHHHHHHHHHHHHHH-----CCCEEEE--EeCCCCHHHHHHHHHHHHH-CCCCEEEEeCCCCChHHHH
Confidence 488999754 22222333444433332 2566544 4455566544455555655 5777776322211112222
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
.+ . .++|+|..... .+. ...++ +..+....+..++++|...|-++++++..+..........+.+.+.+.
T Consensus 73 ~~-~-~~iPvV~i~~~--~~~---~~~~~---V~~d~~~a~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~ 142 (265)
T cd06290 73 AL-A-EEIPVLAVGRR--VPG---PGAAS---IAVDNFQGGYLATQHLIDLGHRRIAHITGPRGHIDARDRLAGYRKALE 142 (265)
T ss_pred HH-h-cCCCEEEECCC--cCC---CCCCE---EEECcHHHHHHHHHHHHHCCCCeEEEEeCccccchhhHHHHHHHHHHH
Confidence 23 2 48999988764 221 12233 557788888889998887899999999765332111455677888888
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+ +.+.....+.... +.......++++.+. .++.|+. ++...+..+++.+++.|+.-
T Consensus 143 ~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~aii~--~~~~~a~~~~~~l~~~g~~i 202 (265)
T cd06290 143 EAG-LEVQPDLIVQGDF----EEESGLEAVEELLQRGPDFTAIFA--ANDQTAYGARLALYRRGLRV 202 (265)
T ss_pred HcC-CCCCHHHEEecCC----CHHHHHHHHHHHHcCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCC
Confidence 777 6543211111111 112233455555543 4566654 56677788899999999853
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK10423 transcriptional repressor RbsR; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.033 Score=54.32 Aligned_cols=201 Identities=12% Similarity=0.110 Sum_probs=115.2
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
++-.||+++|.. ...-.....+++.+.++. |+.+.+ .++..++..-.+....+++ .++.+||= |.....
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~~~~~- 125 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFER-----GYSLVL--CNTEGDEQRMNRNLETLMQ-KRVDGLLLLCTETHQ- 125 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCcch-
Confidence 457899999864 223334555665555542 566554 4445566555555555555 56776663 222111
Q ss_pred HHHHHhhcc-CCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHH
Q 008863 111 AVVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~-~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~ 187 (550)
. ....... .++|+|..... +. ....+ .+..+....+..++++|...|-+++++|..... .. ....+
T Consensus 126 ~-~~~~l~~~~~iPvV~i~~~---~~--~~~~~---~v~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~ 194 (327)
T PRK10423 126 P-SREIMQRYPSVPTVMMDWA---PF--DGDSD---LIQDNSLLGGDLATQYLIDKGYTRIACITGPLDKTPA--RLRLE 194 (327)
T ss_pred h-hHHHHHhcCCCCEEEECCc---cC--CCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEeCCccccch--HHHHH
Confidence 1 1112223 48999987643 11 11112 245565666888889998889999999975432 22 45678
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.|.+.+++.| +.+.....+.... ........++++.+. .++.|+. ++...+..+++.+++.|+.-+
T Consensus 195 Gf~~al~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~~l~~~g~~vP 262 (327)
T PRK10423 195 GYRAAMKRAG-LNIPDGYEVTGDF----EFNGGFDAMQQLLALPLRPQAVFT--GNDAMAVGVYQALYQAGLSVP 262 (327)
T ss_pred HHHHHHHHcC-CCCCcceEEeCCC----ChHHHHHHHHHHhcCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCC
Confidence 8899999888 6543221111111 112223445555433 4566554 566677789999999998543
|
|
| >cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.018 Score=53.97 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=118.4
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||+++|.. ..+-.....+++.+.++. |+.+.+ .++..++....+....++. .++.+||=.........+.
T Consensus 1 ~i~~i~~~~~~~~~~~i~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~~~ 72 (260)
T cd06286 1 TIGVVLPYINHPYFSQLVDGIEKAALKH-----GYKVVL--LQTNYDKEKELEYLELLKT-KQVDGLILCSRENDWEVIE 72 (260)
T ss_pred CEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEEE--EeCCCChHHHHHHHHHHHH-cCCCEEEEeCCCCCHHHHH
Confidence 478999864 334456667777776653 566654 4455566555566666665 5777666322211223344
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLAEA 192 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l~~~ 192 (550)
.+.. .+ |++..... .+ ...+ .+.++....+..++++|...|-++++++..+.. .. ....+.|.+.
T Consensus 73 ~~~~-~~-pvv~~~~~--~~----~~~~---~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~--~~R~~Gf~~~ 139 (260)
T cd06286 73 PYTK-YG-PIVLCEEY--DS----KNIS---SVYIDHYEAFYEALKYLIQKGYRKIAYCIGRKKSLNS--QSRKKAYKDA 139 (260)
T ss_pred HHhc-CC-CEEEEecc--cC----CCCC---EEEECChHHHHHHHHHHHHCCCceEEEEcCCcccchh--HHHHHHHHHH
Confidence 4433 34 88876643 11 2223 366788888889999998889999999976532 22 4556788888
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+++.| +.+.....+.... +..+-...++++.+. .++.|+ +++...+..+++.+++.|+.-
T Consensus 140 l~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~~~~~~l~~~g~~i 201 (260)
T cd06286 140 LEEYG-LTPDEEWIFEGCF----TIEDGERIGHQLLKMKDRPDAIF--TGSDEVAAGIITEAKKQGIRV 201 (260)
T ss_pred HHHcC-CCCChHheEeCCC----CHHHHHHHHHHHHcCCCCCCEEE--EcchHHHHHHHHHHHHcCCCC
Confidence 98887 6543211111111 122334455555543 456555 466677788999999999853
|
This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree. |
| >cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.026 Score=53.24 Aligned_cols=198 Identities=11% Similarity=0.112 Sum_probs=111.0
Q ss_pred EEEEEEec---C-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDA---N-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~---~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.||+++|. . ..+-.....+++-+.++. |+.+.+...+. +...-......+++ .++.+||-......
T Consensus 1 ~vgv~~~~~~~~~~~~~~~~~~~i~~~~~~~-----g~~~~~~~~~~--~~~~~~~~~~~l~~-~~vdgiii~~~~~~-- 70 (268)
T cd06277 1 NIGLIASKRILNSPAFYSEIYRAIEEEAKKY-----GYNLILKFVSD--EDEEEFELPSFLED-GKVDGIILLGGIST-- 70 (268)
T ss_pred CeEEEEeccccccCCcHHHHHHHHHHHHHHc-----CCEEEEEeCCC--ChHHHHHHHHHHHH-CCCCEEEEeCCCCh--
Confidence 38999987 2 223334445555555442 67776665443 33222222333444 57887775222211
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... .+. ...++ +..+....+...++++...|.++++++.............+.|.+
T Consensus 71 ~~~~~l~~~~ipvV~~~~~--~~~---~~~~~---V~~d~~~~~~~a~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~ 142 (268)
T cd06277 71 EYIKEIKELGIPFVLVDHY--IPN---EKADC---VLTDNYSGAYAATEYLIEKGHRKIGFVGDPLYSPSFEERYEGYKK 142 (268)
T ss_pred HHHHHHhhcCCCEEEEccC--CCC---CCCCE---EEecchHHHHHHHHHHHHCCCCcEEEECCCCCCcchHHHHHHHHH
Confidence 2244556779999987654 221 12233 445667777778888888899999999765432111445677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+++.| +.+.....+.... .........++++.. .++.|+. ++...+..+++++++.|+.
T Consensus 143 ~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~l~~~~~-~~~ai~~--~~d~~a~g~~~a~~~~g~~ 202 (268)
T cd06277 143 ALLDHG-IPFNEDYDITEKE---EDEEDIGKFIDELKP-LPTAFFC--SNDGVAFLLIKVLKEMGIR 202 (268)
T ss_pred HHHHcC-CCCCcceEEEcch---hHHHHHHHHHhcCCC-CCCEEEE--CCcHHHHHHHHHHHHcCCC
Confidence 888887 6543221111100 012233333333222 3566555 5566667888999999985
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.063 Score=50.78 Aligned_cols=174 Identities=10% Similarity=0.026 Sum_probs=106.3
Q ss_pred CcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEE
Q 008863 68 NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR 146 (550)
Q Consensus 68 ~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~ 146 (550)
|+.+.+ .++..++..-.+...++++ .++.+||= +..+.........+...+||+|..... .+.. ..+....
T Consensus 29 G~~~~~--~~~~~d~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~--~~~~---~~~~~~~ 100 (272)
T cd06313 29 GVDVTW--YGGALDAVKQVAAIENMAS-QGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTL--IAPL---QINVHSF 100 (272)
T ss_pred CCEEEE--ecCCCCHHHHHHHHHHHHH-cCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCC--CCCC---CCceEEE
Confidence 555554 5666687777777778876 57776664 433333333434456679999998764 2211 1122334
Q ss_pred EecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHH
Q 008863 147 MASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGEL 224 (550)
Q Consensus 147 ~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l 224 (550)
+.++....+..++++|... +.++++++..+..........+.|.+.+++.+..++... ..... +.......+
T Consensus 101 v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~ 174 (272)
T cd06313 101 LAPDNYFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVDE--QPANW----DVSKAARIW 174 (272)
T ss_pred ECCCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEec--cCCCC----CHHHHHHHH
Confidence 6788888899999998766 889999997653321114467788888877531444321 11111 223344555
Q ss_pred HHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 225 KKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 225 ~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
+++.+. .+++|+ +.+...+..+++.+++.|+
T Consensus 175 ~~~l~~~~~~~ai~--~~nd~~a~g~~~al~~~g~ 207 (272)
T cd06313 175 ETWLTKYPQLDGAF--CHNDSMALAAYQIMKAAGR 207 (272)
T ss_pred HHHHHhCCCCCEEE--ECCCcHHHHHHHHHHHcCC
Confidence 555443 345544 4666777788999999998
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >COG1609 PurR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.034 Score=54.21 Aligned_cols=202 Identities=14% Similarity=0.167 Sum_probs=130.3
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++-.||+++|.- ...-.....|++.+.++. |+.+-+ ..+..++..-.+....++. .++.+||=.. .....
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~-----gy~~~l--~~~~~~~~~e~~~~~~l~~-~~vdGiIi~~-~~~~~ 127 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREA-----GYSLLL--ANTDDDPEKEREYLETLLQ-KRVDGLILLG-ERPND 127 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEEE--ECCCCCHHHHHHHHHHHHH-cCCCEEEEec-CCCCH
Confidence 577899999843 222334555555555543 555544 4444466555555555554 6888877433 22333
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC--CCCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN--VYGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~--~~g~~~~~~~~l 189 (550)
.....+...++|+|..+.. .+ ...++ .+..++...+..++++|...|.+++++|.... ..+ ....+.+
T Consensus 128 ~~~~~l~~~~~P~V~i~~~--~~---~~~~~---~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~Gf 197 (333)
T COG1609 128 SLLELLAAAGIPVVVIDRS--PP---GLGVP---SVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSAS--RERLEGY 197 (333)
T ss_pred HHHHHHHhcCCCEEEEeCC--Cc---cCCCC---EEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccH--hHHHHHH
Confidence 3455666779999998865 23 22233 46788899999999999999999999999873 344 6667889
Q ss_pred HHHHhcCCCeEE-EEEeecCCCCCCCCChHHHHHHHHHhhcC--C-CeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 190 AEALQNVSSSEI-QSRLVLPPISSISDPKEAVRGELKKVQDK--Q-SRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 190 ~~~l~~~g~~~v-~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~-~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
.+.+.+.| +.. ......... ...+-...+.++... . ++.|+. ++...+..+++++.+.|+..++
T Consensus 198 ~~al~~~~-~~~~~~~i~~~~~-----~~~~g~~~~~~ll~~~~~~ptAif~--~nD~~Alg~l~~~~~~g~~vP~ 265 (333)
T COG1609 198 RAALREAG-LPINPEWIVEGDF-----SEESGYEAAERLLARGEPRPTAIFC--ANDLMALGALRALRELGLRVPE 265 (333)
T ss_pred HHHHHHCC-CCCCcceEEecCC-----ChHHHHHHHHHHHhcCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCCCC
Confidence 99999999 764 221111111 123444455555543 2 667665 7788899999999999987554
|
|
| >cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.072 Score=50.86 Aligned_cols=202 Identities=13% Similarity=0.114 Sum_probs=116.2
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||+++|.. ...-.....+++-+.++. |+.+. +.++..++..-.+...+++. .++.+||- +..+......
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~i~~~~~-~~vdgiii~~~~~~~~~~~ 72 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKEL-----GAEVI--VQNANGDPAKQISQIENMIA-KGVDVLVIAPVDGEALASA 72 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHc-----CCEEE--EECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChhhHHHH
Confidence 489999854 323344555666555553 45544 45666677666666667776 57876663 3333333344
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc------CCeEEEEEEEcCCCCCcchhHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY------NWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~------~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
...+...++|+|..... .+.. ...+ .+..+....+..++++|... |-++++++..+..........+
T Consensus 73 l~~l~~~~ipvV~~~~~--~~~~---~~~~--~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~l~g~~~~~~~~~R~~ 145 (288)
T cd01538 73 VEKAADAGIPVIAYDRL--ILNS---NVDY--YVSFDNEKVGELQGQALVDGLGAKGKPPGNIELIAGSPTDNNAKLFFN 145 (288)
T ss_pred HHHHHHCCCCEEEECCC--CCCC---Ccce--EEEeChHHHHHHHHHHHHHHHhhcCCCCceEEEEECCCCCchHHHHHH
Confidence 44566789999998765 2211 1122 34567777777788877555 8889999976443211134556
Q ss_pred HHHHHHhcCC---CeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 188 LLAEALQNVS---SSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 188 ~l~~~l~~~g---~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.|++.+++.+ .+.+.... ..... +..+....++++.+. .++.|+. .+...+..++.++++.|+..
T Consensus 146 gf~~~l~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~~~I~~--~~d~~a~g~~~al~~~g~~~ 216 (288)
T cd01538 146 GAMSVLKPLIDSGKITIVGEV-ATPDW----DPETAQKRMENALTANYNKVDGVLA--ANDGTAGGAIAALKAAGLAG 216 (288)
T ss_pred HHHHHHHhccccCCeeEEecc-ccCCC----CHHHHHHHHHHHHHhCCCCccEEEe--CCcHHHHHHHHHHHHcCCCC
Confidence 6777887764 02222111 11110 112233445555433 3455554 56677788999999999865
|
Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. |
| >cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.023 Score=53.76 Aligned_cols=205 Identities=10% Similarity=0.148 Sum_probs=121.0
Q ss_pred EEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChH---HHH
Q 008863 37 IGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWE---ETA 111 (550)
Q Consensus 37 IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~---~~~ 111 (550)
||+++|.. ..+-.....+++-+.++. |+.+. +.++..++....+...+++. .++.++|= |..+. ...
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdgii~~~~~~~~~~~~~ 73 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEK-----GYSLL--LASTNNDPERERKCLENMLS-QGIDGLIIEPTKSALPNPNI 73 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHc-----CCEEE--EEeCCCCHHHHHHHHHHHHH-cCCCEEEEeccccccccccH
Confidence 78888754 222233444444443332 55554 45566777777777778876 58887763 32211 111
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l~ 190 (550)
.....+...++|+|..... .+. .. +..+..++...+..+++++...|.++++++...+. .+ ....+.+.
T Consensus 74 ~~~~~~~~~~ipvV~~~~~--~~~---~~---~~~V~~D~~~~g~~~~~~l~~~G~~~i~~l~~~~~~~~--~~r~~g~~ 143 (273)
T cd01541 74 DLYLKLEKLGIPYVFINAS--YEE---LN---FPSLVLDDEKGGYKATEYLIELGHRKIAGIFKADDLQG--VKRMKGFI 143 (273)
T ss_pred HHHHHHHHCCCCEEEEecC--CCC---CC---CCEEEECcHHHHHHHHHHHHHcCCcCEEEecCCCcccH--HHHHHHHH
Confidence 2233456779999998754 211 11 22467788888899999998889999998875432 22 44567788
Q ss_pred HHHhcCCCeEEEEEe--ecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 191 EALQNVSSSEIQSRL--VLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~--~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+ ..+.... ...... ........++++.+. .+++|+ +.+...+..+++++++.|+..++-+-++
T Consensus 144 ~~l~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~av~--~~~d~~a~g~~~al~~~g~~~p~dv~vv 216 (273)
T cd01541 144 KAYREHG-IPFNPSNVITYTTEE----KEEKLFEKIKEILKRPERPTAIV--CYNDEIALRVIDLLKELGLKIPEDISVV 216 (273)
T ss_pred HHHHHcC-CCCChHHEEeccccc----hhhHHHHHHHHHHcCCCCCCEEE--EcCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 8888877 5322111 111110 112344555555443 456655 4666777789999999998644333333
|
Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i |
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00023 Score=82.45 Aligned_cols=81 Identities=10% Similarity=0.053 Sum_probs=63.7
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|++. .++.||..... . +.+++||-+|++++|++.+|.+ +++++. .+|+.++..|.+|++||
T Consensus 55 ~~~l~vgv~--~~~~p~~~~~~-~--------~g~~~G~~~D~l~~ia~~lG~~--~e~v~~-~~~~~~l~~l~~g~iDl 120 (1197)
T PRK09959 55 KKNLVIAVH--KSQTATLLHTD-S--------QQRVRGINADYLNLLKRALNIK--LTLREY-ADHQKAMDALEEGEVDI 120 (1197)
T ss_pred CCeEEEEec--CCCCCCceeec-C--------CCccceecHHHHHHHHHhcCCc--eEEEeC-CCHHHHHHHHHcCCCcE
Confidence 355777764 23445544422 1 1179999999999999999999 888774 37999999999999999
Q ss_pred EeeceeeeeeeeeEE
Q 008863 532 NYHDKLLFKKKKRLC 546 (550)
Q Consensus 532 a~~~~ti~~~r~~~~ 546 (550)
..+.+++|.+|++.+
T Consensus 121 ~~~~~~~~~~r~~~~ 135 (1197)
T PRK09959 121 VLSHLVASPPLNDDI 135 (1197)
T ss_pred ecCccccccccccch
Confidence 999999999998754
|
|
| >PRK10727 DNA-binding transcriptional regulator GalR; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.04 Score=54.22 Aligned_cols=203 Identities=12% Similarity=0.090 Sum_probs=113.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-.||+++|.- ..+-.....+++.+.++. |+.+ .+.+...++..-.+....++. .++.++|-........
T Consensus 58 ~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~ 129 (343)
T PRK10727 58 STETVGLVVGDVSDPFFGAMVKAVEQVAYHT-----GNFL--LIGNGYHNEQKERQAIEQLIR-HRCAALVVHAKMIPDA 129 (343)
T ss_pred CCCeEEEEeCCCCcchHHHHHHHHHHHHHHc-----CCEE--EEEeCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCChH
Confidence 567899999743 222233444554444442 5554 344555566555555556665 5777766421111122
Q ss_pred HHHHhhccCCcc-EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 VVAEIASRVQVP-ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP-~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.+..+.. ++| ++..... .+. ...++ +.+++...+..++++|...|.+++++|.............+.|.
T Consensus 130 ~~~~~~~--~~p~vV~i~~~--~~~---~~~~~---V~~Dn~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 199 (343)
T PRK10727 130 ELASLMK--QIPGMVLINRI--LPG---FENRC---IALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYY 199 (343)
T ss_pred HHHHHHh--cCCCEEEEecC--CCC---CCCCE---EEECcHHHHHHHHHHHHHCCCccEEEEeCCccccchHHHHHHHH
Confidence 2333332 677 6765543 111 11233 56677777888888888889999999975433111145668889
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+++.| +.+.......... +...-...++++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 200 ~al~~~g-i~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP 264 (343)
T PRK10727 200 DALAESG-IPANDRLVTFGEP----DESGGEQAMTELLGRGRNFTAVAC--YNDSMAAGAMGVLNDNGIDVP 264 (343)
T ss_pred HHHHHCC-CCCChhhEEeCCC----ChhHHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCC
Confidence 9999888 6543211111110 112223345555443 3565554 566778889999999998543
|
|
| >cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.02 Score=53.81 Aligned_cols=196 Identities=12% Similarity=0.142 Sum_probs=110.8
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||+++|.. ..+......+++.+.++. |+.+.+...+ +... ....+.+ .++.+||-.........+
T Consensus 1 ~igvv~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~~~---~~~~---~~~~l~~-~~vdgii~~~~~~~~~~~- 67 (261)
T cd06272 1 TIGLIWPSVSRVALTELVTGINQAISKN-----GYNMNVSITP---SLAE---AEDLFKE-NRFDGVIIFGESASDVEY- 67 (261)
T ss_pred CEEEEecCCCchhHHHHHHHHHHHHHHc-----CCEEEEEecc---cHHH---HHHHHHH-cCcCEEEEeCCCCChHHH-
Confidence 478999864 223334445555544432 5666665433 2222 2233443 577766532222122222
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHh
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~ 194 (550)
..+...++|+|..... .+ ...++ +..++...+..+++++...|.++++++...............+++.++
T Consensus 68 ~~~~~~~ipvV~~~~~--~~----~~~~~---V~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~ 138 (261)
T cd06272 68 LYKIKLAIPVVSYGVD--YD----LKYPI---VNVDNEKAMELAVLYLAEKGHKKIAYIGDLSLDRRQRKRFKGFLETCD 138 (261)
T ss_pred HHHHHcCCCEEEEccc--CC----CCCCE---EEEChHHHHHHHHHHHHHcCchhEEEeecccccccHHHHHHHHHHHHH
Confidence 3445788999987654 22 22233 567788888889999988899999999765431111445677888888
Q ss_pred cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.| +.+.......... ........+.++.+. .+++|+. ++...+..+++.+++.|+.-+
T Consensus 139 ~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~~~~~~l~~~g~~vp 199 (261)
T cd06272 139 ENG-ISISDSHIDVDGL----SAEGGDNAAKKLLKESDLPTAIIC--GSYDIALGVLSALNKQGISIP 199 (261)
T ss_pred HcC-CCCCHHHeeeCCC----CHHHHHHHHHHHHcCCCCCCEEEE--CCcHHHHHHHHHHHHhCCCCC
Confidence 887 5332211111111 122333455555443 3566554 566667789999999998543
|
Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor |
| >TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.075 Score=50.96 Aligned_cols=198 Identities=12% Similarity=0.013 Sum_probs=109.5
Q ss_pred EEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHH-HHH
Q 008863 36 KIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEE-TAV 112 (550)
Q Consensus 36 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~-~~~ 112 (550)
|||+++|... ..-.....+++-+.++. |+.+.+...+...+...-.+....+++ .++.+||= +..... ...
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~-----g~~v~~~~~~~~~~~~~~~~~i~~l~~-~~vDgiIi~~~~~~~~~~~ 74 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKHL-----GVELKVLEAGGYPNLDKQLAQIEQCKS-WGADAILLGTVSPEALNHD 74 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHHh-----CCEEEEEcCCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChhhhhHH
Confidence 5899998542 11223334444444432 666665433333455555556666665 68887763 322222 122
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-C----CeEEEEEEEcCCCCCcchhHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N----WRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~----w~~v~ii~~~~~~g~~~~~~~ 187 (550)
+.. +. .++|+|..... ... . ..+..+..+....+..++++|... . -.+++++.............+
T Consensus 75 l~~-~~-~~iPvV~~~~~--~~~--~---~~~~~V~~D~~~~g~~~~~~L~~~~~~~~g~~~I~~i~g~~~~~~~~~R~~ 145 (295)
T TIGR02955 75 LAQ-LT-KSIPVFALVNQ--IDS--N---QVKGRVGVDWYQMGYQAGEYLAQRHPKGSGPTTLAWLPGPKNRGGTKPVTQ 145 (295)
T ss_pred HHH-Hh-cCCCEEEEecC--CCc--c---ceeEEEeecHHHHHHHHHHHHHHhcccCCCCeeEEEEeCCCcCCchhHHHH
Confidence 333 33 48999876432 111 1 123346677777888888888651 1 346999976543211155678
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+++.+++.| +.+... ..... ....-...++++.+. ..++| +++...+..+++++++.|+.
T Consensus 146 Gf~~al~~~g-~~~~~~--~~~~~----~~~~~~~~~~~~L~~~~~~d~i---~~~d~~a~g~l~al~~~g~~ 208 (295)
T TIGR02955 146 GFRAALEGSD-VEISAI--LWADN----DKELQRNLLQDLLKKHPDIDYL---VGSAVAAEAAISELRSLHMT 208 (295)
T ss_pred HHHHHHhcCC-cEEEEE--ecCCC----cHHHHHHHHHHHHHhCCCcCEE---EeccHHHHHHHHHHHhhCcc
Confidence 8999999888 776532 11111 223334455555433 35643 34556677888998888873
|
Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein. |
| >COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00025 Score=67.38 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=50.8
Q ss_pred ccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 486 ~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
.+.||.|||++++++.++-. -....+.-.|++++..|..|+.|+.++.+++|.||++.+.
T Consensus 57 ~~~G~dvdl~~~ia~~l~~~--~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~er~~~~~ 116 (275)
T COG0834 57 KLVGFDVDLAKAIAKRLGGD--KKVEFVPVAWDGLIPALKAGKVDIIIAGMTITPERKKKVD 116 (275)
T ss_pred eEEeeeHHHHHHHHHHhCCc--ceeEEeccchhhhhHHHhcCCcCEEEeccccCHHHhcccc
Confidence 79999999999999998876 2233334579999999999999999999999998877553
|
|
| >TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.046 Score=53.34 Aligned_cols=208 Identities=10% Similarity=0.065 Sum_probs=118.4
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
.+-.||+++|.. ...-.....+++-+.++ .|+.+.+. +...++..-.+....++. .++.++|- |......
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~-----~gy~~~i~--~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~ 130 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCRE-----AGYQLLIA--CSDDNPDQEKVVIENLLA-RQVDALIVASCMPPED 130 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHH-----CCCEEEEE--eCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCCh
Confidence 467899999853 22233444455444443 26666543 344455444445555554 57777653 3322122
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
..+ ..+...++|+|..... .+. ...++ +.+++...+..++++|...|.++++++.............+.|+
T Consensus 131 ~~~-~~l~~~~iPvV~~~~~--~~~---~~~~~---V~~dn~~~~~~~~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 201 (327)
T TIGR02417 131 AYY-QKLQNEGLPVVALDRS--LDD---EHFCS---VISDDVDAAAELIERLLSQHADEFWYLGAQPELSVSRDRLAGFR 201 (327)
T ss_pred HHH-HHHHhcCCCEEEEccc--cCC---CCCCE---EEeCcHHHHHHHHHHHHHCCCCeEEEEeCcccchhHHHHHHHHH
Confidence 223 3445679999987754 221 12333 55677777888888888889999999975443211145567788
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+.+.| +...... .... ...+-...++++.+. .++.|+. .+...+..+++++++.|-.+++...++
T Consensus 202 ~al~~~~-~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~~Ai~~--~~D~~A~g~~~al~~~g~vP~dvsvig 271 (327)
T TIGR02417 202 QALKQAT-LEVEWVY-GGNY-----SRESGYQMFAKLCARLGRLPQALFT--TSYTLLEGVLDYMLERPLLDSQLHLAT 271 (327)
T ss_pred HHHHHcC-CChHhEE-eCCC-----ChHHHHHHHHHHHhcCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCCCcceEEE
Confidence 8888888 6432111 1111 112333455555443 3566665 556667789999999993333433343
|
Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. |
| >cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.029 Score=52.97 Aligned_cols=201 Identities=12% Similarity=0.084 Sum_probs=114.5
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
.||++.|.. ..+-.....++..+.++. |+.+.+...+ .+. ...+...+++...++.+||=...... ....
T Consensus 1 ~Igvi~p~~~~~~~~~~~~~i~~~~~~~-----gy~~~~~~~~--~~~-~~~~~~~~~l~~~~vdgvi~~~~~~~-~~~~ 71 (269)
T cd06297 1 TISVLLPVVATEFYRRLLEGIEGALLEQ-----RYDLALFPLL--SLA-RLKRYLESTTLAYLTDGLLLASYDLT-ERLA 71 (269)
T ss_pred CEEEEeCCCcChhHHHHHHHHHHHHHHC-----CCEEEEEeCC--CcH-HHHHHHHHHHHhcCCCEEEEecCccC-hHHH
Confidence 378899864 223334445555555553 6666665433 222 22333433333356666553222112 2334
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC--C------CCCcchhH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN--V------YGGDSGKL 186 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~--~------~g~~~~~~ 186 (550)
..+...++|+|..... .+ ..++ +.++....+...++.|... .++++++.... . .. ....
T Consensus 72 ~~l~~~~iPvv~~~~~--~~-----~~~~---v~~d~~~~g~~a~~~L~~~-~~~i~~i~~~~~~~~~~~~~~~--~~R~ 138 (269)
T cd06297 72 ERRLPTERPVVLVDAE--NP-----RFDS---FYLDNRLGGRLAGAYLADF-PGRIGAITVEEEPDRAFRRTVF--AERR 138 (269)
T ss_pred HHHhhcCCCEEEEccC--CC-----CCCE---EEECcHHHHHHHHHHHHHh-CCceEEEeCccccccccccccH--HHHH
Confidence 4456789999988654 21 1233 4578888888888888766 79999886432 1 23 4557
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
+.+++.+++.| +.+.....+.... +..+....++++.+. .++.|+. .+...+..+++.+++.|..-++-+.
T Consensus 139 ~gf~~~~~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~~l~~~g~~vP~di~ 211 (269)
T cd06297 139 AGFQQALKDAG-RPFSPDLLAITDH----SEEGGRLAMRHLLEKASPPLAVFA--SADQQALGALQEAVELGLTVGEDVR 211 (269)
T ss_pred HHHHHHHHHcC-CCCChhhEEeCCC----ChhhHHHHHHHHHcCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCCCCceE
Confidence 88889998888 6543211111111 123334556665543 3566665 5666778899999999975443343
Q ss_pred E
Q 008863 265 I 265 (550)
Q Consensus 265 i 265 (550)
+
T Consensus 212 v 212 (269)
T cd06297 212 V 212 (269)
T ss_pred E
Confidence 3
|
Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding. |
| >cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.043 Score=51.54 Aligned_cols=199 Identities=14% Similarity=0.176 Sum_probs=116.5
Q ss_pred EEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
.||+++|... ..-.....++..++++. |+++.+ .+...++..-......+.. .++.++|= |...... .
T Consensus 1 ~Ig~i~p~~~~~~~~~~~~~i~~~~~~~-----g~~~~~--~~~~~~~~~~~~~i~~l~~-~~~dgiii~~~~~~~~--~ 70 (263)
T cd06280 1 TVGLIVADIRNPFFTAVSRAVEDAAYRA-----GLRVIL--CNTDEDPEKEAMYLELMEE-ERVTGVIFAPTRATLR--R 70 (263)
T ss_pred CEEEEecccccccHHHHHHHHHHHHHHC-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCch--H
Confidence 4899998752 23344556666666653 666644 4445565544444455554 46665553 3221211 2
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALLAEA 192 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l~~~ 192 (550)
.. ....++|+|..... .+ ....++ +..+....+..++++|...|-++++++..... .. ....+.+++.
T Consensus 71 ~~-~~~~~iPvV~~~~~--~~---~~~~~~---v~~d~~~~g~~a~~~L~~~g~~~i~~~~~~~~~~~--~~R~~gf~~~ 139 (263)
T cd06280 71 LA-ELRLSFPVVLIDRA--GP---AGRVDA---VVLDNRAAARTLVEHLVAQGYRRIGGLFGNASTTG--AERRAGYEDA 139 (263)
T ss_pred HH-HHhcCCCEEEECCC--CC---CCCCCE---EEECcHHHHHHHHHHHHHCCCceEEEEeCCCCCCH--HHHHHHHHHH
Confidence 22 34568999998754 22 122344 34677788888899998889999999976432 22 4556778888
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
+.+.+ +...... ... ...+....+.++.+. .+++|+ +.+...+..+++.+++.|+.-++-+.+
T Consensus 140 ~~~~~-~~~~~~~-~~~------~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~~l~~~g~~~p~di~i 204 (263)
T cd06280 140 MRRHG-LAPDARF-VAP------TAEAAEAALAAWLAAPERPEALV--ASNGLLLLGALRAVRAAGLRIPQDLAL 204 (263)
T ss_pred HHHcC-CCCChhh-ccc------CHHHHHHHHHHHhcCCCCCcEEE--ECCcHHHHHHHHHHHHcCCCCCCcEEE
Confidence 88887 6532211 111 112323444554433 456554 466677888999999999854333333
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.17 Score=47.66 Aligned_cols=198 Identities=11% Similarity=0.101 Sum_probs=110.0
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHH-HHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET-AVV 113 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~-~~v 113 (550)
+||++...+...-.....++..+.++. |+.+.+.. ++..+...-.+....++. .++.++| .|...... ..+
T Consensus 1 ~i~~v~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~-~~~~~~~~~~~~i~~l~~-~~vDgiIi~~~~~~~~~~~l 73 (271)
T cd06314 1 TIAVVTNGASPFWKIAEAGVKAAGKEL-----GVDVEFVV-PQQGTVNAQLRMLEDLIA-EGVDGIAISPIDPKAVIPAL 73 (271)
T ss_pred CeEEEcCCCcHHHHHHHHHHHHHHHHc-----CCeEEEeC-CCCCCHHHHHHHHHHHHh-cCCCEEEEecCChhHhHHHH
Confidence 478887554333334445555555442 55555432 344455555555666665 5787766 34333322 333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
..+ .. ++|+|..... .+. ... +..+..+....+..+++++... +-.+++++.............+.+++
T Consensus 74 ~~~-~~-~ipvV~~~~~--~~~--~~~---~~~V~~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~ 144 (271)
T cd06314 74 NKA-AA-GIKLITTDSD--APD--SGR---YVYIGTDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKD 144 (271)
T ss_pred HHH-hc-CCCEEEecCC--CCc--cce---eEEEccChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHH
Confidence 444 45 9999998754 111 111 2235677778888888888653 33456666654321111456678899
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+++.| +++.... .... ...+....++++.+. .++.|+. .+...+..++..+++.|+.
T Consensus 145 ~~~~~~-~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~i~~--~~d~~a~~~~~al~~~g~~ 204 (271)
T cd06314 145 AIKDSK-IEIVDTR-GDEE-----DFAKAKSNAEDALNAHPDLKCMFG--LYAYNGPAIAEAVKAAGKL 204 (271)
T ss_pred HHhcCC-cEEEEEe-cCcc-----CHHHHHHHHHHHHHhCCCccEEEe--cCCccHHHHHHHHHHcCCC
Confidence 999888 7764321 1111 123334455555443 3466654 3444555678888888886
|
Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP). |
| >cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.14 Score=48.53 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=115.1
Q ss_pred EEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||+++|... ..-.....+++.+.++. |+.+. +.+...++..-.+....+++ .++.+||- +..+......
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~-----g~~v~--~~~~~~~~~~~~~~i~~~~~-~~~Dgiii~~~~~~~~~~~ 72 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKAL-----GYELI--STDAQGDLTKQIADVEDLLT-RGVNVLIINPVDPEGLVPA 72 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHc-----CCEEE--EEcCCCCHHHHHHHHHHHHH-cCCCEEEEecCCccchHHH
Confidence 5899998642 22233444555555542 55553 45665676666666666766 57766653 3333322333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCe--EEEEEEEcC--CCCCcchhHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWR--RVAAIYEDN--VYGGDSGKLAL 188 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~--~v~ii~~~~--~~g~~~~~~~~ 188 (550)
...+...++|+|..... .+.. .+.+..+..+....+..++++|.. .|-+ +++++..+. ..+ ....+.
T Consensus 73 i~~~~~~~iPvV~~~~~--~~~~----~~~~~~v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~--~~R~~g 144 (282)
T cd06318 73 VAAAKAAGVPVVVVDSS--INLE----AGVVTQVQSSNAKNGNLVGEWVVGELGDKPMKIILLSGDAGNLVG--QARRDG 144 (282)
T ss_pred HHHHHHCCCCEEEecCC--CCCC----cCeEEEEecCcHHHHHHHHHHHHHHhCCCCceEEEEECCCCCchH--hHHHHh
Confidence 44556789999998753 1110 123445778888889999998865 6754 888887543 233 556677
Q ss_pred HHHHHhcCCCeEE------EEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQNVSSSEI------QSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~~g~~~v------~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+++.+.+.+ ... .......... ...+....+.++... +++.|+. .+...+..+++++++.|+.
T Consensus 145 f~~~l~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~ 215 (282)
T cd06318 145 FLLGVSEAQ-LRKYGKTNFTIVAQGYGDW----TREGGLKAMEDLLVAHPDINVVYS--ENDDMALGAMRVLAEAGKT 215 (282)
T ss_pred HHHHHhhCc-ccccccCCeEEEecCCCCC----CHHHHHHHHHHHHHhCCCcCEEEE--CCcchHHHHHHHHHHcCCC
Confidence 888888775 421 1110011111 112323444454332 4565655 5556677899999999985
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00045 Score=62.46 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=56.6
Q ss_pred cccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeeceeeeeeee
Q 008863 464 FFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLLFKKKK 543 (550)
Q Consensus 464 ~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~ 543 (550)
.++||.....+. .++||+.|+++.+++.+|.+ +++++.. |..++..|.+|++|++++..+.+.+|+
T Consensus 8 ~~~p~~~~~~~g----------~~~G~~~~~~~~~~~~~g~~--~~~~~~~--~~~~~~~l~~g~~D~~~~~~~~~~~~~ 73 (218)
T cd00134 8 TYPPFSFRDANG----------ELTGFDVDLAKAIAKELGVK--VKFVEVD--WDGLITALKSGKVDLIAAGMTITPERA 73 (218)
T ss_pred CCCCeeEECCCC----------CEEeeeHHHHHHHHHHhCCe--EEEEeCC--HHHHHHHHhcCCcCEEeecCcCCHHHH
Confidence 456787653222 68999999999999999977 7777755 999999999999999999888888887
Q ss_pred eE
Q 008863 544 RL 545 (550)
Q Consensus 544 ~~ 545 (550)
+.
T Consensus 74 ~~ 75 (218)
T cd00134 74 KQ 75 (218)
T ss_pred hh
Confidence 65
|
PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD. |
| >PRK09526 lacI lac repressor; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.1 Score=51.18 Aligned_cols=202 Identities=12% Similarity=0.078 Sum_probs=114.7
Q ss_pred CcEEEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc--CCChHH
Q 008863 33 EVTKIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG--METWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG--~~~s~~ 109 (550)
.+-.||+++|... ..-.....+++-+.++ .|+.+.+...+. .+...-.+....+++ .++.+||- +.....
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~-----~g~~~~i~~~~~-~~~~~~~~~l~~l~~-~~vdGiii~~~~~~~~ 134 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQ-----LGYSVVISMVER-SGVEACQAAVNELLA-QRVSGVIINVPLEDAD 134 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHH-----CCCEEEEEeCCC-ChHHHHHHHHHHHHh-cCCCEEEEecCCCcch
Confidence 4567999998542 2223444555555544 267776643322 223333344455554 57777663 433322
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
...+. ....++|++..... +. ...+ .+..++...+..++++|...|.++++++.............+.|
T Consensus 135 ~~~~~--~~~~~iPvV~~d~~---~~---~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~l~g~~~~~~~~~R~~Gf 203 (342)
T PRK09526 135 AEKIV--ADCADVPCLFLDVS---PQ---SPVN---SVSFDPEDGTRLGVEHLVELGHQRIALLAGPESSVSARLRLAGW 203 (342)
T ss_pred HHHHH--hhcCCCCEEEEecc---CC---CCCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCccccHHHHHHHH
Confidence 22221 12358999887542 11 1122 35677788888899999888999999997643211114456778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
++.+++.| +.+.... .... ...+-...+.++.+. .++.|+. ++...+..+++.+++.|+.-++
T Consensus 204 ~~al~~~g-i~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~ 268 (342)
T PRK09526 204 LEYLTDYQ-LQPIAVR-EGDW-----SAMSGYQQTLQMLREGPVPSAILV--ANDQMALGVLRALHESGLRVPG 268 (342)
T ss_pred HHHHHHcC-CCcceEE-eCCC-----chHHHHHHHHHHhcCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCCCC
Confidence 88998888 7543221 1111 112223344454433 4565554 5667778899999999986443
|
|
| >cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.059 Score=50.66 Aligned_cols=193 Identities=17% Similarity=0.171 Sum_probs=112.1
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
.||++.|.. ..+-.....+++-+.++. |+.+. +.++..++..-.+....++. .++.+||- +.... .
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~i~~~~~-~~~dgiii~~~~~~----~ 68 (265)
T cd06291 1 LIGLIVPTISNPFFSELARAVEKELYKK-----GYKLI--LCNSDNDPEKEREYLEMLRQ-NQVDGIIAGTHNLG----I 68 (265)
T ss_pred CEEEEECCCCChhHHHHHHHHHHHHHHC-----CCeEE--EecCCccHHHHHHHHHHHHH-cCCCEEEEecCCcC----H
Confidence 378888753 333334445555544442 55554 34454555544455555554 56776663 32222 1
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALLAEA 192 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l~~~ 192 (550)
..+...++|+|..... .+ ...++ +.++....+..++++|...|.++++++..... +.......+.+.+.
T Consensus 69 -~~~~~~gipvv~~~~~--~~----~~~~~---V~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~ 138 (265)
T cd06291 69 -EEYENIDLPIVSFDRY--LS----ENIPI---VSSDNYEGGRLAAEELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDV 138 (265)
T ss_pred -HHHhcCCCCEEEEeCC--CC----CCCCe---EeechHHHHHHHHHHHHHcCCcEEEEEccCcccccchHHHHHHHHHH
Confidence 2345679999998865 22 22333 56777778888899998889999999975443 21114556778889
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+++.+ +.+.... ..... +..+....++++.+. .++.|+. ++...+..+++.+.+.|..
T Consensus 139 l~~~~-~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~~~~~al~~~g~~ 198 (265)
T cd06291 139 LKENG-LEVRIIE-IQENF----DDAEKKEEIKELLEEYPDIDGIFA--SNDLTAILVLKEAQQRGIR 198 (265)
T ss_pred HHHcC-CCCChhe-eeccc----cchHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCC
Confidence 98887 6542211 11111 111223445555433 3455554 4555777899999999975
|
This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription |
| >cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.042 Score=52.32 Aligned_cols=195 Identities=12% Similarity=0.137 Sum_probs=111.5
Q ss_pred EEEEEecC------CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 37 IGAIVDAN------SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 37 IG~i~~~~------~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
||+++|.. ...-.....+++-+.++. |+.+.+...+. .. +....++ ..++.+++-.......
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~---~~---~~~~~~~-~~~~dgiii~~~~~~~ 69 (283)
T cd06279 2 VGVVLTDSLSYAFSDPVASQFLAGVAEVLDAA-----GVNLLLLPASS---ED---SDSALVV-SALVDGFIVYGVPRDD 69 (283)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHHHC-----CCEEEEecCcc---HH---HHHHHHH-hcCCCEEEEeCCCCCh
Confidence 89999863 222234445555444442 66666543322 11 2223344 3678877753222222
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC------------
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV------------ 178 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~------------ 178 (550)
.....+...++|+|..... .+ ...+ .+..+....+...+++|...|-++++++..+..
T Consensus 70 -~~~~~~~~~~ipvV~~~~~--~~----~~~~---~v~~d~~~~g~~~~~~L~~~g~~~i~~i~~~~~~~~~~~~~~~~~ 139 (283)
T cd06279 70 -PLVAALLRRGLPVVVVDQP--LP----PGVP---SVGIDDRAAAREAARHLLDLGHRRIGILGLRLGRDRNTGRVTDER 139 (283)
T ss_pred -HHHHHHHHcCCCEEEEecC--CC----CCCC---EEeeCcHHHHHHHHHHHHHcCCCcEEEecCccccccccccccccc
Confidence 2344556789999987654 21 1223 467788888999999998889999999975421
Q ss_pred -----CCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHH
Q 008863 179 -----YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTE 251 (550)
Q Consensus 179 -----~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~ 251 (550)
........+.+.+.+++.+ +.+.....+.... .........++++.+. ..++|+ +++...+..+++.
T Consensus 140 ~~~~~~~~~~~R~~gf~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~gv~~a 213 (283)
T cd06279 140 LASATFSVARERLEGYLEALEEAG-IDISDVPIWEIPE---NDRASGEEAARELLDASPRPTAIL--CMSDVLALGALQV 213 (283)
T ss_pred ccccccccHHHHHHHHHHHHHHcC-CCCChheEEecCC---CchHHHHHHHHHHHcCCCCCcEEE--ECCcHHHHHHHHH
Confidence 0001345677888888777 5432111111111 0123344556666544 345555 4566677789999
Q ss_pred HHHcCCCC
Q 008863 252 ANRMGLVG 259 (550)
Q Consensus 252 a~~~g~~~ 259 (550)
+++.|+.-
T Consensus 214 l~~~g~~i 221 (283)
T cd06279 214 ARELGLRV 221 (283)
T ss_pred HHHcCCCC
Confidence 99999853
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.21 Score=47.15 Aligned_cols=210 Identities=12% Similarity=0.138 Sum_probs=111.8
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~v 113 (550)
+||++.|.. ...-.....++..+.++.+.. ...+.... ....++..-.+....+ .. ++.+++ .+.........
T Consensus 1 ~ig~v~~~~~~~~~~~~~~~i~~~~~~~g~~--~~~~~~~~-~~~~~~~~~~~~i~~~-~~-~vdgiii~~~~~~~~~~~ 75 (275)
T cd06307 1 RLGFLLPKGSNAFYRELAAALEAAAAAFPDA--RIRVRIHF-VESFDPAALAAALLRL-GA-RSDGVALVAPDHPQVRAA 75 (275)
T ss_pred CeEEEeCCCCChHHHHHHHHHHHHHhhhhcc--CceEEEEE-ccCCCHHHHHHHHHHH-Hh-cCCEEEEeCCCcHHHHHH
Confidence 589998764 223334555666666554221 22232222 2334554444444444 34 677665 34333322233
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-C--CeEEEEEEEcCCCCCcchhHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N--WRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~--w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
...+...++|+|..... .+.. .. +..+..+....+...+++|... | -++++++.............+.++
T Consensus 76 i~~~~~~~ipvV~~~~~--~~~~--~~---~~~V~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~ 148 (275)
T cd06307 76 VARLAAAGVPVVTLVSD--LPGS--PR---AGYVGIDNRAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREMGFR 148 (275)
T ss_pred HHHHHHCCCcEEEEeCC--CCCC--ce---eeEEccChHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHHHHH
Confidence 34555689999987643 1111 11 2235666677777777877554 5 369999876433211144567788
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+ ..+.......... +..+....++++.+. .++.|+. ..+. +..+++.+++.|+. .+...++
T Consensus 149 ~a~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~-~~d~--~~g~~~al~~~g~~-~di~Ivg 217 (275)
T cd06307 149 SVLREEF-PGLRVLETLEGLD----DPARAYEATRKLLARHPDLVGIYN-AGGG--NRGVIRALREAGRA-GKVVFVG 217 (275)
T ss_pred HHHHhhC-CCcEEEeeccCCC----ChHHHHHHHHHHHHhCCCceEEEE-CCCC--hHHHHHHHHHcCCC-CCcEEEE
Confidence 8888776 5443222221111 222334455555432 5677776 5443 36899999999985 3433333
|
Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes. |
| >cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.24 Score=47.56 Aligned_cols=203 Identities=8% Similarity=-0.053 Sum_probs=114.8
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||++.+.. ..+-.....+++.+.++. |+.+.+. .+...++....+....+++ .++.+||- +.........
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~-----g~~v~~~-~~~~~d~~~~~~~i~~~~~-~~~DgiIi~~~~~~~~~~~ 73 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKEL-----GVDAIYV-GPTTADAAGQVQIIEDLIA-QGVDAIAVVPNDPDALEPV 73 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHh-----CCeEEEE-CCCCCCHHHHHHHHHHHHh-cCCCEEEEecCCHHHHHHH
Confidence 588888753 323334555666555552 5555532 2444566666666667766 47776664 3333322334
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-CC-eEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-NW-RRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~w-~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+. . . .......++....+..++++|... +- ++++++.............+.+++
T Consensus 74 ~~~~~~~~iPvV~v~~~--~~~-~--~-~~~~~v~~D~~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~ 147 (298)
T cd06302 74 LKKAREAGIKVVTHDSD--VQP-D--N-RDYDIEQADNKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKA 147 (298)
T ss_pred HHHHHHCCCeEEEEcCC--CCC-C--c-ceeEEeccCHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 44556789999997754 211 0 0 113345577788888889988665 43 689998754332111345577888
Q ss_pred HHhcCCCeE-EEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 192 ALQNVSSSE-IQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 192 ~l~~~g~~~-v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+++.| .. +.......... +...-...++++.+. .++.|+. .+...+..+++.+++.|+.
T Consensus 148 ~l~~~g-~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~D~~A~g~~~al~~~g~~ 210 (298)
T cd06302 148 YQKEKY-YPMLELVDRQYGDD----DADKSYQTAQELLKAYPDLKGIIG--PTSVGIPGAARAVEEAGLK 210 (298)
T ss_pred HHhhcC-CCCeEEeCcccCCC----CHHHHHHHHHHHHHhCCCceEEEE--CCCcchhHHHHHHHhcCCC
Confidence 888875 22 22111111111 112223344444333 4555554 5566778899999999986
|
Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p |
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00083 Score=77.91 Aligned_cols=78 Identities=3% Similarity=0.029 Sum_probs=60.7
Q ss_pred CeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEe
Q 008863 454 PMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNY 533 (550)
Q Consensus 454 ~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~ 533 (550)
+++++. ...++||.+..++. .+.||.+|++++|++.+|.+ +++++.. .|.-+...|.+|++|+.
T Consensus 303 ~l~v~~--~~~~pP~~~~d~~g----------~~~G~~~Dll~~i~~~~g~~--~~~v~~~-~~~~~~~~l~~g~~D~i- 366 (1197)
T PRK09959 303 DLKVLE--NPYSPPYSMTDENG----------SVRGVMGDILNIITLQTGLN--FSPITVS-HNIHAGTQLNPGGWDII- 366 (1197)
T ss_pred ceEEEc--CCCCCCeeEECCCC----------cEeeehHHHHHHHHHHHCCe--EEEEecC-CHHHHHHHHHCCCceEe-
Confidence 345543 34678999875432 68999999999999999988 7777653 47778888999999975
Q ss_pred eceeeeeeeeeEEE
Q 008863 534 HDKLLFKKKKRLCL 547 (550)
Q Consensus 534 ~~~ti~~~r~~~~~ 547 (550)
++++.|++|++.++
T Consensus 367 ~~~~~t~~r~~~~~ 380 (1197)
T PRK09959 367 PGAIYSEDRENNVL 380 (1197)
T ss_pred ecccCCccccccce
Confidence 56668999998764
|
|
| >cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.065 Score=50.29 Aligned_cols=199 Identities=11% Similarity=0.030 Sum_probs=106.3
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
|||+++|.. .........+..++++.-++ .|+.+.+ .++. ++....+....+.. .++.+||-.... ....+..
T Consensus 1 ~Igvi~~~~-~~~~~f~~~l~~gi~~~~~~-~gy~~~~--~~~~-~~~~~~~~~~~l~~-~~vdgiii~~~~-~~~~~~~ 73 (260)
T cd06304 1 KVALVYDGG-GGDKSFNQSAYEGLEKAEKE-LGVEVKY--VESV-EDADYEPNLRQLAA-QGYDLIFGVGFG-FMDAVEK 73 (260)
T ss_pred CEEEEecCC-CCcchHHHHHHHHHHHHHHh-cCceEEE--EecC-CHHHHHHHHHHHHH-cCCCEEEECCcc-hhHHHHH
Confidence 689999852 11234444444444443322 2555444 4444 55444455555554 577766542222 2233434
Q ss_pred hhccC-CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-CCeEEEEEEEcCC-CCCcchhHHHHHHH
Q 008863 116 IASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-NWRRVAAIYEDNV-YGGDSGKLALLAEA 192 (550)
Q Consensus 116 ~~~~~-~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~w~~v~ii~~~~~-~g~~~~~~~~l~~~ 192 (550)
..... ++|++..... .+. ....+ .+..+...-++..+.++... |-+++++|..+.. .. ....+.|.+.
T Consensus 74 ~~~~~~~ipvv~~~~~--~~~--~~~~~---~v~~d~~~~~~~a~~l~~~~~g~~~I~~i~~~~~~~~--~~R~~Gf~~~ 144 (260)
T cd06304 74 VAKEYPDVKFAIIDGV--VDA--PPNVA---SYVFREYEGSYLAGVLAALMTKTGKVGFVGGMPIPEV--NRFINGFAAG 144 (260)
T ss_pred HHHHCCCCEEEEecCc--cCC--CCCee---eeecchHHHHHHHHHHHHHhccCCceEEEeccccHHH--HHHHHHHHHH
Confidence 44433 7898887654 111 01112 23445555555556555554 8899999976432 22 4456778888
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMG 256 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g 256 (550)
+++.+ ............. .+...-...++++.+..+++| + +.+...+..++.++++.|
T Consensus 145 ~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~ai-~-~~~d~~A~gv~~al~~~g 202 (260)
T cd06304 145 AKSVN-PDITVLVIYTGSF---FDPAKGKEAALALIDQGADVI-F-AAAGGTGPGVIQAAKEAG 202 (260)
T ss_pred HHHhC-CCcEEEEEEecCc---cCcHHHHHHHHHHHhCCCCEE-E-EcCCCCchHHHHHHHHcC
Confidence 88877 5433221111110 011233445666655567766 4 566677778999999988
|
Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold. |
| >PRK14987 gluconate operon transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.11 Score=50.87 Aligned_cols=206 Identities=11% Similarity=0.077 Sum_probs=118.2
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-.||+++|.- ...-.....+++.+.++. |+.+.+ .+...++..-.+....++. .++.+||-...... .
T Consensus 62 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~~~~-~~vdgiI~~~~~~~-~ 132 (331)
T PRK14987 62 TSRAIGVLLPSLTNQVFAEVLRGIESVTDAH-----GYQTML--AHYGYKPEMEQERLESMLS-WNIDGLILTERTHT-P 132 (331)
T ss_pred CCCEEEEEeCCCcchhHHHHHHHHHHHHHHC-----CCEEEE--ecCCCCHHHHHHHHHHHHh-cCCCEEEEcCCCCC-H
Confidence 456899999853 222334445555555442 566654 4444555444444455554 57777774221111 2
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l~ 190 (550)
.....+...++|+|..... .. . .... .+..+....+..++++|...|.++++++..... .. ....+.|+
T Consensus 133 ~~~~~l~~~~iPvV~~~~~--~~--~--~~~~--~V~~Dn~~~~~~a~~~L~~~Gh~~I~~i~~~~~~~~--~~R~~Gf~ 202 (331)
T PRK14987 133 RTLKMIEVAGIPVVELMDS--QS--P--CLDI--AVGFDNFEAARQMTTAIIARGHRHIAYLGARLDERT--IIKQKGYE 202 (331)
T ss_pred HHHHHHHhCCCCEEEEecC--CC--C--CCCc--eEEeCcHHHHHHHHHHHHHCCCceEEEEcCCCcccH--HHHHHHHH
Confidence 2333456779999975422 11 1 1111 367788888888999998899999999965432 22 34567788
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
+.+.+.| +.... ..+.... ...+-...++++.+. .++.|+. ++...+..+++++++.|+.-++-+-|
T Consensus 203 ~al~~~g-~~~~~-~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nD~~A~g~~~al~~~g~~vP~disv 271 (331)
T PRK14987 203 QAMLDAG-LVPYS-VMVEQSS----SYSSGIELIRQARREYPQLDGVFC--TNDDLAVGAAFECQRLGLKVPDDMAI 271 (331)
T ss_pred HHHHHcC-CCccc-eeecCCC----ChhhHHHHHHHHHhcCCCCCEEEE--CCcHHHHHHHHHHHHcCCCCCCccEE
Confidence 8898888 53111 1111111 112223345555443 4566654 66777888999999999865433333
|
|
| >PRK10401 DNA-binding transcriptional regulator GalS; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.12 Score=50.76 Aligned_cols=201 Identities=10% Similarity=0.085 Sum_probs=113.7
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-.||+++|.. ...-.....+++-+.++. |+.+. +.+...++..-.+....+.+ .++.+||-........
T Consensus 58 ~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~-----gy~~~--~~~~~~~~~~~~~~i~~l~~-~~vdGiIi~~~~~~~~ 129 (346)
T PRK10401 58 VSDTIGVVVMDVSDAFFGALVKAVDLVAQQH-----QKYVL--IGNSYHEAEKERHAIEVLIR-QRCNALIVHSKALSDD 129 (346)
T ss_pred CCCEEEEEeCCCCCccHHHHHHHHHHHHHHC-----CCEEE--EEcCCCChHHHHHHHHHHHh-cCCCEEEEeCCCCChH
Confidence 456899999854 223334445555555443 55543 34555555544445555554 5777666321111122
Q ss_pred HHHHhhccCCcc-EEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHH
Q 008863 112 VVAEIASRVQVP-ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~~~iP-~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~ 188 (550)
.+..+.. ++| ++..... .+. ...++ +..++...+...+++|...|.+++++|..... .. ....+.
T Consensus 130 ~~~~~~~--~~p~vV~i~~~--~~~---~~~~~---V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~G 197 (346)
T PRK10401 130 ELAQFMD--QIPGMVLINRV--VPG---YAHRC---VCLDNVSGARMATRMLLNNGHQRIGYLSSSHGIEDD--AMRRAG 197 (346)
T ss_pred HHHHHHh--cCCCEEEEecc--cCC---CCCCE---EEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCcch--HHHHHH
Confidence 2333433 355 6665543 111 12233 55677777888888888889999999975432 23 556788
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
|++.+++.| +.+.......... ....-...++++.+. .++.|+. .+...+..+++.+++.|+.-+
T Consensus 198 f~~al~~~g-i~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP 264 (346)
T PRK10401 198 WMSALKEQG-IIPPESWIGTGTP----DMQGGEAAMVELLGRNLQLTAVFA--YNDNMAAGALTALKDNGIAIP 264 (346)
T ss_pred HHHHHHHcC-CCCChhheecCCC----ChHHHHHHHHHHHcCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCCC
Confidence 899999888 6543211111111 112223445555433 4666665 567777889999999998644
|
|
| >cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.064 Score=50.46 Aligned_cols=203 Identities=10% Similarity=0.090 Sum_probs=114.8
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
+||+++|.+.........+++-+.++. .|+.+.+. .. +. .+....+. ..++.++|-...+.. ...
T Consensus 1 ~ig~i~~~~~~~~~~~~~gi~~~~~~~----~g~~~~~~--~~--~~---~~~~~~l~-~~~vdGiI~~~~~~~---~~~ 65 (265)
T cd01543 1 RVALLVETSSSYGRGVLRGIARYAREH----GPWSIYLE--PR--GL---QEPLRWLK-DWQGDGIIARIDDPE---MAE 65 (265)
T ss_pred CeEEEecccchhhHHHHHHHHHHHHhc----CCeEEEEe--cc--cc---hhhhhhcc-ccccceEEEECCCHH---HHH
Confidence 589999855444445556665555553 25565442 22 11 23333343 457887774322221 223
Q ss_pred hhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhc
Q 008863 116 IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQN 195 (550)
Q Consensus 116 ~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~ 195 (550)
.+...++|+|..... .+. .. +-++..++...+..+++++...|.++++++...... ......+.+++.+++
T Consensus 66 ~l~~~~~PvV~~~~~--~~~---~~---~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~-~~~~R~~gf~~~~~~ 136 (265)
T cd01543 66 ALQKLGIPVVDVSGS--REK---PG---IPRVTTDNAAIGRMAAEHFLERGFRHFAFYGLPGAR-WSDEREEAFRQLVAE 136 (265)
T ss_pred HHhhCCCCEEEEeCc--cCC---CC---CCEEeeCHHHHHHHHHHHHHHCCCcEEEEEcCCCCH-HHHHHHHHHHHHHHH
Confidence 445679999998754 221 11 234678888888889999988899999998754331 113445778888988
Q ss_pred CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC-CCCEEEEEe
Q 008863 196 VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV-GKDSVWIVT 267 (550)
Q Consensus 196 ~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~-~~~~~~i~~ 267 (550)
.| +.+.......... ..........++++.+. .+++|+ +++...+..+++.+++.|+. +++...+.-
T Consensus 137 ~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~~l~~~g~~vp~di~vigf 206 (265)
T cd01543 137 AG-YECSFFYRGLSTD--AQSWEEEQEELAQWLQSLPKPVGIF--ACTDARARQLLEACRRAGIAVPEEVAVLGV 206 (265)
T ss_pred cC-CccccccCccccc--cccHHHHHHHHHHHHhcCCCCcEEE--ecChHHHHHHHHHHHHhCCCCCCceEEEee
Confidence 88 6542111000000 00112223445554433 456555 46777788899999999984 334444443
|
Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >PRK09492 treR trehalose repressor; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.19 Score=48.62 Aligned_cols=191 Identities=14% Similarity=0.093 Sum_probs=113.0
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCC-ChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME-TWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~-~s~~~ 110 (550)
.+-+||+++|.. ...-.....++. +.+++. |+.+ .+.++..++....+....+.. .++.++|-.. .....
T Consensus 61 ~~~~Ig~i~~~~~~~~~~~~~~~i~---~~~~~~--gy~~--~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~ 132 (315)
T PRK09492 61 SDKVVGIIVSRLDSLSENQAVRTML---PAFYEQ--GYDP--IIMESQFSPEKVNEHLGVLKR-RNVDGVILFGFTGITE 132 (315)
T ss_pred CCCeEEEEecCCcCcccHHHHHHHH---HHHHHc--CCeE--EEEecCCChHHHHHHHHHHHh-cCCCEEEEeCCCcccH
Confidence 456899999853 222233444444 344443 5655 345555666555555555544 6788777532 22222
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEc-C--CCCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED-N--VYGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~-~--~~g~~~~~~~ 187 (550)
......++|++..... .+ ..+ .+.+++...+..++++|...|.++++++... . ..+ ....+
T Consensus 133 ----~~l~~~~~pvv~i~~~--~~-----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~ 196 (315)
T PRK09492 133 ----EMLAPWQDKLVLLARD--AK-----GFS---SVCYDDEGAIKLLMQRLYDQGHRHISYLGVDHSDVTTG--KRRHQ 196 (315)
T ss_pred ----HHHHhcCCCEEEEecc--CC-----CCc---EEEECcHHHHHHHHHHHHHcCCCeEEEEcCCcccchhH--HHHHH
Confidence 2223456787765532 11 122 3566777788888899888899999999632 2 233 45678
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.|.+.+++.| +.+... .... +.......++++.+.+++.|+. .+...+..+++++++.|+
T Consensus 197 Gf~~al~~~g-~~~~~~--~~~~-----~~~~~~~~~~~~l~~~~~ai~~--~~D~~A~g~~~al~~~g~ 256 (315)
T PRK09492 197 AYLAFCKQHK-LTPVAA--LGGL-----SMQSGYELVAKVLTPETTALVC--ATDTLALGASKYLQEQGR 256 (315)
T ss_pred HHHHHHHHcC-CCceee--cCCC-----CchHHHHHHHHHhhcCCCEEEE--cCcHHHHHHHHHHHHcCC
Confidence 8999999988 764321 1111 1122233455554456777765 556777889999999998
|
|
| >TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0013 Score=60.70 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=39.2
Q ss_pred ccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeeceeeeeeeeeE
Q 008863 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLLFKKKKRL 545 (550)
Q Consensus 488 ~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~ 545 (550)
.||++||++++++.+|.+ ++++...-.|.-++..|..|++|++++ +.+|++.
T Consensus 19 ~G~~~el~~~i~~~~g~~--i~~~~~~~~~~~~~~~l~~g~~Di~~~----~~~r~~~ 70 (232)
T TIGR03871 19 EGFENKIAQLLADDLGLP--LEYTWFPQRRGFVRNTLNAGRCDVVIG----VPAGYEM 70 (232)
T ss_pred CchHHHHHHHHHHHcCCc--eEEEecCcchhhHHHHHhcCCccEEEe----ccCcccc
Confidence 599999999999999999 555543323444677899999999876 4556543
|
This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme. |
| >PRK11041 DNA-binding transcriptional regulator CytR; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.15 Score=49.19 Aligned_cols=209 Identities=15% Similarity=0.105 Sum_probs=118.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
++-+||+++|.. ..+......+++-+.++. |+.+.+ .+...+...-.+....++. .++.+||= +.....
T Consensus 34 ~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~i~~l~~-~~vDgiIi~~~~~~~- 104 (309)
T PRK11041 34 ESRTILVIVPDICDPFFSEIIRGIEVTAAEH-----GYLVLI--GDCAHQNQQEKTFVNLIIT-KQIDGMLLLGSRLPF- 104 (309)
T ss_pred CCcEEEEEeCCCcCccHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHH-cCCCEEEEecCCCCh-
Confidence 567999999864 333445556666666653 555544 4444455544455556655 57777663 221111
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.... .......|++..+.. .+. ...++ +..+....+...+++|...|-+++++|.............+.|+
T Consensus 105 ~~~~-~~~~~~~pvv~~~~~--~~~---~~~~~---V~~Dn~~~g~~a~~~l~~~G~~~I~~l~~~~~~~~~~~R~~Gf~ 175 (309)
T PRK11041 105 DASK-EEQRNLPPMVMANEF--APE---LELPT---VHIDNLTAAFEAVNYLHELGHKRIACIAGPEEMPLCHYRLQGYV 175 (309)
T ss_pred HHHH-HHHhcCCCEEEEccc--cCC---CCCCE---EEECcHHHHHHHHHHHHHcCCceEEEEeCCccccchHHHHHHHH
Confidence 1111 122223467765543 111 12233 56788888888899998889999999975433211144578888
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+.+.| +.+.......... ........+.++.+. .++.|+. ++...+..+++++++.|+.-++-++++
T Consensus 176 ~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~gv~~al~~~g~~ip~di~vv 246 (309)
T PRK11041 176 QALRRCG-ITVDPQYIARGDF----TFEAGAKALKQLLDLPQPPTAVFC--HSDVMALGALSQAKRMGLRVPQDLSII 246 (309)
T ss_pred HHHHHcC-CCCCHHHeEeCCC----CHHHHHHHHHHHHcCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCCcceEEE
Confidence 8998888 6543211111111 122334555666543 3666665 556666688999999997533224443
|
|
| >cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.33 Score=45.64 Aligned_cols=196 Identities=13% Similarity=0.092 Sum_probs=103.9
Q ss_pred EEEEEEecC----CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 36 KIGAIVDAN----SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 36 ~IG~i~~~~----~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
|||+++|.. ...-.....|++.+.++ .|+.+.+. +.. ++..-.+....++. .++.+||-.... ...
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-----~gy~~~i~--~~~-~~~~~~~~i~~l~~-~~vdgiI~~~~~-~~~ 70 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-----LGIEYKYV--ESK-SDADYEPNLEQLAD-AGYDLIVGVGFL-LAD 70 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-----cCCeEEEE--ecC-CHHHHHHHHHHHHh-CCCCEEEEcCcc-hHH
Confidence 589999852 22233444555555554 26666554 332 33333444555554 688888853222 122
Q ss_pred HHHHhhccC-CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 112 VVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~-~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.+....... ++|++..+.. .+. . +.+-++..+....+..++.++.. .|.+++++|..+.... .....+.+
T Consensus 71 ~~~~~~~~~~~~PiV~i~~~--~~~--~---~~~~~v~~d~~~a~~~a~~ll~~~~G~~~I~~i~~~~~~~-~~~r~~gf 142 (265)
T cd06354 71 ALKEVAKQYPDQKFAIIDAV--VDD--P---PNVASIVFKEEEGSFLAGYLAALMTKTGKVGFIGGMDIPL-IRRFEAGF 142 (265)
T ss_pred HHHHHHHHCCCCEEEEEecc--cCC--C---CcEEEEEecchhHHHHHHHHHHhhcCCCeEEEEecccChH-HHHHHHHH
Confidence 344455554 8999987653 111 0 11223444555555555566654 3999999997543211 02223567
Q ss_pred HHHHhcCC---C-eEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcC
Q 008863 190 AEALQNVS---S-SEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMG 256 (550)
Q Consensus 190 ~~~l~~~g---~-~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g 256 (550)
++.+++.| . ++.... ..... ....+-...++++.+.++++|+. .+...+..+++.+++.|
T Consensus 143 ~~~~~~~g~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~ll~~~pdaI~~--~nd~~A~gv~~al~~~g 206 (265)
T cd06354 143 EAGVKYVNPGVPDIEVLVQ--YAGSF---NDPAKGKEIAQAMYDQGADVIFA--AAGGTGNGVFQAAKEAG 206 (265)
T ss_pred HHHHHHHhccCCCceEEEE--EcCcc---cCHHHHHHHHHHHHHCCCcEEEE--CCCCCchHHHHHHHhcC
Confidence 77776643 0 222111 11110 01123334556665556787665 56667778899999988
|
Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold. |
| >cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.44 Score=44.86 Aligned_cols=192 Identities=11% Similarity=0.078 Sum_probs=105.1
Q ss_pred EEEEEEecCC--ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHH
Q 008863 36 KIGAIVDANS--QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~~--~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~ 112 (550)
+||++.+.+. ..+......+..++++.-++ .|+.+.+... ..+.. ... .++.++| .+..+. .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~--~~~~~--------~~~-~~vdgii~~~~~~~---~ 65 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYLSIRLGIEKRAQE-LGIELTKFFR--DDDLL--------EIL-EDVDGIIAIGKFSQ---E 65 (270)
T ss_pred CeEEEEeccccccccCccHHHHHHHHHHHHHH-cCCEEEEEec--cchhH--------Hhc-cCcCEEEEecCCCH---H
Confidence 5889988541 22233333333333333322 2666665433 22111 122 4566554 222222 2
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-------CCCcchh
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-------YGGDSGK 185 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-------~g~~~~~ 185 (550)
....+...++|++..... .. ....+ .+..++...+..+++++...|.++++++..... .. ...
T Consensus 66 ~~~~~~~~~~pvV~~~~~--~~---~~~~~---~v~~D~~~a~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~--~~R 135 (270)
T cd01544 66 QLAKLAKLNPNLVFVDSN--PA---PDGFD---SVVPDFEQAVEKALDYLLELGHTRIGFIGGEEKTTDGHEYIE--DPR 135 (270)
T ss_pred HHHHHHhhCCCEEEECCC--CC---CCCCC---EEEECHHHHHHHHHHHHHHcCCCcEEEECCCcccccccchhh--hHH
Confidence 334455678999987654 11 12233 356788888888999998889999999986532 22 445
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC----CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK----QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~----~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+.+.+.+.| .. .....+.... +..+....++++.+. .+++|+ +++...+..+++.+++.|+.-+
T Consensus 136 ~~gf~~~~~~~~-~~-~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ai~--~~~d~~a~g~~~~l~~~g~~vp 206 (270)
T cd01544 136 ETAFREYMKEKG-LY-DPELIYIGDF----TVESGYQLMKEALKSLGDNLPTAFF--IASDPMAIGALRALQEAGIKVP 206 (270)
T ss_pred HHHHHHHHHHcC-CC-ChheEeeCCC----CHHHHHHHHHHHHhccCCCCCCEEE--EcCcHHHHHHHHHHHHcCCCCC
Confidence 677888888877 42 1111111110 112223444444332 245544 4677778889999999998643
|
Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi |
| >TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.62 Score=44.80 Aligned_cols=199 Identities=9% Similarity=0.008 Sum_probs=110.4
Q ss_pred EEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHHH
Q 008863 37 IGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVVA 114 (550)
Q Consensus 37 IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v~ 114 (550)
||++.|.- +..-.....+++.+.++. |+.+ .+.++..++..-.+....++. .++.+||= +..........
T Consensus 1 ig~~~~~~~~~~~~~~~~~i~~~a~~~-----g~~v--~~~~~~~~~~~q~~~i~~l~~-~~vDgIIi~~~~~~~~~~~l 72 (302)
T TIGR02634 1 IGVSIDDLRLERWQKDRDIFVAAAESL-----GAKV--FVQSANGNEAKQISQIENLIA-RGVDVLVIIPQNGQVLSNAV 72 (302)
T ss_pred CeeecCccchhhHHHHHHHHHHHHHhc-----CCEE--EEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhHHHHHH
Confidence 56666543 222233334444444432 5555 445666777666667777776 57776653 33333333444
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCe-EEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWR-RVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~-~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
..+...++|+|..... .+. . +....+..+....+..++++|...+-+ +++++..+..........+.+++.+
T Consensus 73 ~~~~~~~iPvV~~d~~--~~~---~--~~~~~V~~d~~~~g~~~~~~L~~~g~~~~i~~i~g~~~~~~~~~R~~g~~~~~ 145 (302)
T TIGR02634 73 QEAKDEGIKVVAYDRL--IND---A--DIDFYLSFDNEKVGEMQARAVLEAAPKGNYFLMGGSPTDNNAKLLRGGQMKVL 145 (302)
T ss_pred HHHHHCCCeEEEecCc--CCC---C--CccEEEecCHHHHHHHHHHHHHhhCCCCCEEEEeCCCCCcchHHHHHHHHHHH
Confidence 5567789999997654 211 1 122346678888888999998776655 6777765322110033456666667
Q ss_pred hcC----CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 194 QNV----SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 194 ~~~----g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
++. + +.+......... ...+....++++... .+++|+. .+...+..+++++++.|+.
T Consensus 146 ~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~aI~~--~~D~~A~g~~~al~~~g~~ 209 (302)
T TIGR02634 146 QPAIDSGD-IKIVGDQWVDGW-----LPENALRIMENALTANDNKVDAVVA--SNDATAGGAIQALTAQGLA 209 (302)
T ss_pred hhhccCCC-eEEecCcCCCCC-----CHHHHHHHHHHHHHhCCCCccEEEE--CCCchHHHHHHHHHHCCCC
Confidence 653 3 443211111110 123334556665432 4566554 5566677899999999984
|
Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter. |
| >TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.9 Score=43.87 Aligned_cols=191 Identities=11% Similarity=0.015 Sum_probs=110.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
.+-.||+++|.- .........++.-+.++ . |+.+-+ .++..++....+....+.. .++.++|- +......
T Consensus 58 ~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~---~--gy~~~i--~~~~~~~~~~~~~~~~l~~-~~vdGvIi~~~~~~~~ 129 (311)
T TIGR02405 58 SDKVVAVIVSRLDSPSENLAVSGMLPVFYT---A--GYDPII--MESQFSPQLTNEHLSVLQK-RNVDGVILFGFTGCDE 129 (311)
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHHHHHH---C--CCeEEE--ecCCCChHHHHHHHHHHHh-cCCCEEEEeCCCCCCH
Confidence 445799999753 22222333444333333 2 566543 4455555544444444443 57776663 2211111
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEc-C--CCCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED-N--VYGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~-~--~~g~~~~~~~ 187 (550)
. .....++|++..+.. .+ ..+ .+.+++...+..++++|...|.+++++|..+ . ..+ ....+
T Consensus 130 ~----~l~~~~~p~V~i~~~--~~-----~~~---~V~~D~~~~~~~a~~~L~~~Ghr~I~~i~~~~~~~~~~--~~R~~ 193 (311)
T TIGR02405 130 E----ILESWNHKAVVIARD--TG-----GFS---SVCYDDYGAIELLMANLYQQGHRHISFLGVDPSDKTTG--LMRHN 193 (311)
T ss_pred H----HHHhcCCCEEEEecC--CC-----Ccc---EEEeCcHHHHHHHHHHHHHcCCCcEEEEccCcccchhH--HHHHH
Confidence 1 223457788776543 11 122 3667888888889999988999999999732 2 233 45678
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.|++.+++.| +.... . .... ...+....++++.+.+++.|+ +++...+..+++.+.+.|+
T Consensus 194 gf~~a~~~~g-i~~~~-~-~~~~-----~~~~~~~~~~~~l~~~~tAi~--~~~D~~A~g~~~~l~~~g~ 253 (311)
T TIGR02405 194 AYLAYCESAN-LEPIY-Q-TGQL-----SHESGYVLTDKVLKPETTALV--CATDTLALGAAKYLQELDR 253 (311)
T ss_pred HHHHHHHHcC-CCcee-e-eCCC-----CHHHHHHHHHHHHhcCCCEEE--ECCcHHHHHHHHHHHHcCC
Confidence 8999999998 75211 1 1111 112333445555444567665 4677778889999999996
|
This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis |
| >COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.3 Score=43.29 Aligned_cols=206 Identities=13% Similarity=0.081 Sum_probs=106.1
Q ss_pred CcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCCCCcEEEEEEec--CCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD--HNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d--~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
+..+++++.+-. ..+.+....|.+.+-++. +.+++..... ...+.....+...++.+ ++...|++...
T Consensus 34 ~~~~~~~~~~g~~~D~s~n~~~~~g~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~g~~lI~~~gf- 106 (345)
T COG1744 34 KKKKVAVIDVGGIDDKSFNQSAYEGLLKAKKEL-----GLKVETYYWEYVQSDSEADYERALRALAE-DGYDLIFGTGF- 106 (345)
T ss_pred cceEEEEEecCCCCccchhHHHHHHHHHHHHHh-----CCceEeeeeeecCCcchhHHHHHHHHHHh-cCCCEEEEecc-
Confidence 456666666543 344566667777666555 4455553332 22234455556666665 57788887543
Q ss_pred HHHHHHHHhhccC-CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC-CCCCcchh
Q 008863 108 EETAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-VYGGDSGK 185 (550)
Q Consensus 108 ~~~~~v~~~~~~~-~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~-~~g~~~~~ 185 (550)
.-..++..++.++ ++.++...+. .....+...+.||..-. ..++-.++..+.+ -.+++.|..-+ +-- ..+
T Consensus 107 ~~~d~~~~va~~~Pd~~F~iid~~---~~~~~Nv~s~~f~~~eg-ayL~G~~AA~~sk--~~~vG~vgg~~~p~v--~~f 178 (345)
T COG1744 107 AFSDALEKVAAEYPDVKFVIIDGV---VKKEDNVASYVFREYEG-AYLAGVAAAKMSK--SGKVGFVGGMDIPEV--NRF 178 (345)
T ss_pred chhhHHHHHHHHCCCCEEEEecCc---cCCCCceEEEEeccccH-HHHHHHHHHHhhc--CCceeEEecccchhh--HHH
Confidence 3344455555555 4444443332 11111333456655432 2233333333322 34555555433 222 556
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
...|...++..+ -.+.....+-..- . +...-......+.+.++|+|+- .+.+..... +.+|++.+...
T Consensus 179 ~~gF~~Gak~~n-p~i~v~v~~~gsf--~-D~~k~k~~a~~li~~GaDVI~~-~ag~~~~gv-~~~A~~~~~~~ 246 (345)
T COG1744 179 INGFLAGAKSVN-PDIKVKVVYVGSF--S-DPAKGKEAANALIDQGADVIYP-AAGGTGVGV-FQAAKELGAYA 246 (345)
T ss_pred HHHHHHHHHhhC-CCccEEEEEecCc--c-ChHHHHHHHHHHHhcCCCEEEe-cCCCCcchH-HHHHHHhCCCe
Confidence 667777776655 3333333222211 1 1122344777888889999998 665544333 33777777643
|
|
| >cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.38 Score=45.03 Aligned_cols=193 Identities=10% Similarity=0.044 Sum_probs=100.5
Q ss_pred EEEEEEecC---CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
|||++++-. ..+......|++.+.++ .|.++. +.+...++....+.+.++++ ++...|++. +.....+
T Consensus 1 kva~l~~g~~~D~~~n~~~~~G~~~~~~~-----~gv~~~--~~e~~~~~~~~~~~i~~~~~-~g~dlIi~~-g~~~~~~ 71 (258)
T cd06353 1 KVAFVYVGPIGDQGWNYAHDEGRKAAEKA-----LGVEVT--YVENVPEGADAERVLRELAA-QGYDLIFGT-SFGFMDA 71 (258)
T ss_pred CEEEEEeCCCCccchhHHHHHHHHHHHHh-----cCCeEE--EEecCCchHhHHHHHHHHHH-cCCCEEEEC-chhhhHH
Confidence 588888744 22333444555554444 244444 44555466677777888876 589999983 3334444
Q ss_pred HHHhhccC-CccEEeccCCCCCCcccCCCCCeEEEEecCc---HHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 113 VAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASND---SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 113 v~~~~~~~-~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
+..++.++ ++.++..... .+ . |.+..+.... ..++-.++..+.. -.+|++|...... ........
T Consensus 72 ~~~vA~~~p~~~F~~~d~~--~~---~---~Nv~~~~~~~~e~~ylaG~~Aa~~t~--t~kVG~I~g~~~~-~~~~~~~g 140 (258)
T cd06353 72 ALKVAKEYPDVKFEHCSGY--KT---A---PNVGSYFARIYEGRYLAGVVAGKMTK--TNKVGYVAAFPIP-EVVRGINA 140 (258)
T ss_pred HHHHHHHCCCCEEEECCCC--CC---C---CCeeeEechhhHHHHHHHHHHHHhhc--CCcEEEEcCcccH-HHHHHHHH
Confidence 55555554 3444443322 11 1 3333332222 2233334444433 3589999865421 11344556
Q ss_pred HHHHHhcCC-CeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 189 LAEALQNVS-SSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 189 l~~~l~~~g-~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
|...++..+ .+++.... ..... +...-....+.+.+.++|+|+- .+.. ..++.++++.|.
T Consensus 141 F~~G~~~~~p~~~v~~~~-~g~~~----D~~~a~~~a~~l~~~G~DvI~~-~~~~---~g~~~aa~~~g~ 201 (258)
T cd06353 141 FALGARSVNPDATVKVIW-TGSWF----DPAKEKEAALALIDQGADVIYQ-HTDS---PGVIQAAEEKGV 201 (258)
T ss_pred HHHHHHHHCCCcEEEEEE-ecCCC----CcHHHHHHHHHHHHCCCcEEEe-cCCC---hHHHHHHHHhCC
Confidence 666555333 03333222 11111 1122345556677779998888 6622 467888888773
|
Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold. |
| >cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.7 Score=41.19 Aligned_cols=205 Identities=11% Similarity=0.008 Sum_probs=107.0
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC-hHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET-WEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~-s~~~~~v 113 (550)
+||++.|.. ...-.....++..+.++. |+.+ .+.++..++..-.+....++. .++.+||=... .......
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~-----gy~~--~~~~~~~~~~~~~~~i~~l~~-~~vdgiil~~~~~~~~~~~ 73 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAI-----GWNL--RILDGRGSEAGQAAALNQAIA-LKPDGIVLGGVDAAELQAE 73 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHc-----CcEE--EEECCCCCHHHHHHHHHHHHH-cCCCEEEEcCCCHHHHHHH
Confidence 588888753 222223444554444443 5554 344555666655556666665 57777664322 1211222
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC-CCCcchhHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGGDSGKLALLA 190 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~-~g~~~~~~~~l~ 190 (550)
...+...++|+|..... ...........+-.+..+....+..++++|... |-++++++..... .. ....+.++
T Consensus 74 ~~~~~~~~iPvV~~d~~--~~~~~~~~~~~~~~v~~D~~~~~~~~~~~L~~~~~G~~~i~~i~~~~~~~~--~~r~~~~~ 149 (280)
T cd06315 74 LELAQKAGIPVVGWHAG--PEPGPIEEPGIFYNVTTDPLAVAEVAALYAIANSGGKAGVVIFTDSRFSIA--KAKANAMK 149 (280)
T ss_pred HHHHHHCCCCEEEecCC--CCCCcccCCceeEEecCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCccH--HHHHHHHH
Confidence 23445679999988653 111100000113446778888888899988765 8899999864322 11 11123444
Q ss_pred HHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
..++.. + ..+.......... .........+++.+. .+++|+ +++...+..+++.+++.|+..
T Consensus 150 ~~~~a~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~ai~--~~~D~~A~g~~~~l~~~g~~~ 215 (280)
T cd06315 150 EIIEACKG-CTVLSIEDVPISR----TATRMPALTARLLQRYGDKWTHSL--AINDLYFDYMAPPLASAGRKA 215 (280)
T ss_pred HHHHhCCC-CEEEEecccCcch----hhhhhHHHHHHHHHhcCcccceec--ccchhhhHHhHHHHHHhcccC
Confidence 444432 2 2221111111100 111111344444332 245544 577778888999999999864
|
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis. |
| >TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.3 Score=40.80 Aligned_cols=201 Identities=10% Similarity=0.073 Sum_probs=103.1
Q ss_pred EEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 37 IGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 37 IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
||++.+.. ..+-.....+++.+.++. |+ ..+++. +...++..-.+....+++ .++.+||- |..+......
T Consensus 1 Igvi~~~~~~~f~~~~~~gi~~~a~~~-----g~-~~~i~~~~~~~d~~~q~~~i~~l~~-~~vdgiIi~~~~~~~~~~~ 73 (302)
T TIGR02637 1 IGLVVKSLGNPFFEAANKGAEEAAKEL-----GS-VYIIYTGPTGTTAEGQIEVVNSLIA-QKVDAIAISANDPDALVPA 73 (302)
T ss_pred CEEEeccCCCHHHHHHHHHHHHHHHHh-----CC-eeEEEECCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHHHH
Confidence 57777653 222234445555555554 32 222222 345677666667777776 57776553 4433333334
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEec-CcHHhHHHHHHHH-HHc-CCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMAS-NDSEQMKCIADLA-RKY-NWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~al~~~l-~~~-~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
...+...+||+|..... .+. . .....+.. +....++..++.+ +++ +-.++++|..+..........+.++
T Consensus 74 l~~~~~~giPvV~~~~~--~~~-~----~~~~~v~~~Dn~~~g~~aa~~l~~~l~~~~~I~~i~g~~~~~~~~~r~~g~~ 146 (302)
T TIGR02637 74 LKKAMKRGIKVVTWDSG--VAP-E----GRNLFLNQASADLIGRTQVQLAAEQIGNGGEIAILSAASTATNQNAWIEIMK 146 (302)
T ss_pred HHHHHHCCCEEEEeCCC--CCC-C----ceeEEEecCCHHHHHHHHHHHHHHHcCCCcEEEEEECCCCCccHHHHHHHHH
Confidence 44566789999987754 211 1 11233333 3444445455554 332 2368999876533210123456677
Q ss_pred HHHhcCC--CeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNVS--SSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~g--~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+.+ ..++.... .... ..+.-...++++.+.. .+.|+. .....+..+++++++.|..+
T Consensus 147 ~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~L~~~~~~~ai~~--~~d~~a~ga~~al~~~g~~~ 211 (302)
T TIGR02637 147 KELKDPKYPKVKLVATV--YGDD----DAQKSYQEAQGLLKSYPNLKGIIA--PTTVGIKAAAQAVSDAKLIG 211 (302)
T ss_pred HHHhhccCCCCEEEeee--cCCc----hHHHHHHHHHHHHHhCCCccEEEe--CCCchHHHHHHHHHhcCCCC
Confidence 7776542 03332111 1111 1233344555555443 445544 45666777888888888753
|
This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source. |
| >PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria | Back alignment and domain information |
|---|
Probab=94.11 E-value=4.6 Score=37.02 Aligned_cols=212 Identities=12% Similarity=0.059 Sum_probs=119.5
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cC-CCCHHHHHHHHHHhhhcCCeEEEEcC-CChHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DH-NRDPFQAATAAQELINKEKVKVIAGM-ETWEET 110 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~-~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~~~ 110 (550)
.++||++.+.-+ .+...++|++..+++.-. ..|.-+++ |+ ...-...+.....|..+..+.|||=. .-+..+
T Consensus 2 ~~kIGivTgtvS-q~ed~~r~Ae~l~~~Yg~----~~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~ 76 (275)
T PF12683_consen 2 DYKIGIVTGTVS-QSEDEYRGAEELIKKYGD----VMIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTA 76 (275)
T ss_dssp -EEEEEEE--TT-T-HHHHHHHHHHHHHHHH----HEEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---H
T ss_pred ceEEEEEeCCcc-cChHHHHHHHHHHHHhCc----ceEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchH
Confidence 589999997553 356677888888877632 26666666 43 34556777888888888889888853 333455
Q ss_pred HHHHHhhc-cCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCC--CcchhHH
Q 008863 111 AVVAEIAS-RVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG--GDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~-~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g--~~~~~~~ 187 (550)
.++..+=+ +-.|.+|+..... +|..-...... -+.++....+..++...+.+|.++|+-+.....-. ......+
T Consensus 77 ~af~kIkekRpDIl~ia~~~~E-Dp~~i~~~aDi--~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~ 153 (275)
T PF12683_consen 77 EAFRKIKEKRPDILLIAGEPHE-DPEVISSAADI--VVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRRD 153 (275)
T ss_dssp HHHHHHHHH-TTSEEEESS--S--HHHHHHHSSE--EEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEcCCCcC-CHHHHhhccCe--EeccchhhccHHHHHHHHHcCCceEEEEechhhcchHHHHHHHH
Confidence 55555433 4567777755441 23211112233 34578888899999999999999999997654322 0122234
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHH-----HHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAV-----RGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~-----~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.+++.-++.| ++.+....-.+.. ..+.... ...-+.+++-+.++-+. +++......+++++.+.|.
T Consensus 154 ~M~~~C~~lG-i~fv~~taPDP~s--d~gv~gaqqfIlE~vp~~i~kYGkdtaff-~TN~a~~epllk~~~~~g~ 224 (275)
T PF12683_consen 154 IMEEACKDLG-IKFVEVTAPDPTS--DVGVAGAQQFILEDVPKWIKKYGKDTAFF-CTNDAMTEPLLKQALEYGG 224 (275)
T ss_dssp HHHHHHHHCT---EEEEEE---SS--TCHHHHHHHHHHHHHHHHHHHH-S--EEE-ESSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcC-CeEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHhCCceeEE-ecCccccHHHHHHHHHcCC
Confidence 4566667789 8877665443332 0111111 12234556669999999 9999999999999999874
|
They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A. |
| >TIGR02990 ectoine_eutA ectoine utilization protein EutA | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.66 Score=42.51 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCC---CCCCChHHHHHHHHHhhcC
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS---SISDPKEAVRGELKKVQDK 230 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~---~~~~~~~d~~~~l~~i~~~ 230 (550)
-..|+.+-|+++|.+|++++.. |- ....+.+.+.+++.| ++|.....+.... +...+.....+.++++...
T Consensus 107 ~~~A~~~AL~alg~~RIalvTP---Y~--~~v~~~~~~~l~~~G-~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~ 180 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTP---YT--PETSRPMAQYFAVRG-FEIVNFTCLGLTDDREMARISPDCIVEAALAAFDP 180 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECC---Cc--HHHHHHHHHHHHhCC-cEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCC
Confidence 5678999999999999999985 55 778899999999999 9988764443321 1112334556666666677
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHH-cCC
Q 008863 231 QSRVFIVLQASLDMTIHLFTEANR-MGL 257 (550)
Q Consensus 231 ~~~~ii~~~~~~~~~~~il~~a~~-~g~ 257 (550)
++|.|++ .|..-....++.++.+ +|.
T Consensus 181 ~aDAifi-sCTnLrt~~vi~~lE~~lGk 207 (239)
T TIGR02990 181 DADALFL-SCTALRAATCAQRIEQAIGK 207 (239)
T ss_pred CCCEEEE-eCCCchhHHHHHHHHHHHCC
Confidence 9999999 8999899999999876 454
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens. |
| >PRK10339 DNA-binding transcriptional repressor EbgR; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=6.5 Score=38.18 Aligned_cols=146 Identities=14% Similarity=0.032 Sum_probs=83.4
Q ss_pred CCeEEEEc-CCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEE
Q 008863 96 EKVKVIAG-METWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIY 174 (550)
Q Consensus 96 ~~v~aiiG-~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~ 174 (550)
.++.++|- +..+. .....+...++|++..... .+ ...++ .+..+....+..++++|...|.+++++|.
T Consensus 113 ~~vDgiI~~~~~~~---~~~~~l~~~~~pvV~~~~~--~~---~~~~~---~V~~D~~~~~~~a~~~l~~~G~~~i~~i~ 181 (327)
T PRK10339 113 KNVTGILIVGKPTP---ALRAAASALTDNICFIDFH--EP---GSGYD---AVDIDLARISKEIIDFYINQGVNRIGFIG 181 (327)
T ss_pred ccCCEEEEeCCCCH---HHHHHHHhcCCCEEEEeCC--CC---CCCCC---EEEECHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 45665553 22221 2334445678999987643 11 11223 35677777888889999888999999996
Q ss_pred EcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHH
Q 008863 175 EDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEA 252 (550)
Q Consensus 175 ~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a 252 (550)
..............+.+.+...| + +.....+.... ...+....++++.+. .++.|+ +++...+..+++++
T Consensus 182 ~~~~~~~~~~R~~gf~~~~~~~g-~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~D~~A~g~~~al 253 (327)
T PRK10339 182 GEDEPGKADIREVAFAEYGRLKQ-V-VREEDIWRGGF----SSSSGYELAKQMLAREDYPKALF--VASDSIAIGVLRAI 253 (327)
T ss_pred CccccchhhHHHHHHHHHHHHcC-C-CChhheeecCc----ChhHHHHHHHHHHhCCCCCCEEE--ECCcHHHHHHHHHH
Confidence 54321101344566777777777 5 11111111110 112233445555432 355555 46677788999999
Q ss_pred HHcCCCCC
Q 008863 253 NRMGLVGK 260 (550)
Q Consensus 253 ~~~g~~~~ 260 (550)
++.|+.-+
T Consensus 254 ~~~g~~vP 261 (327)
T PRK10339 254 HERGLNIP 261 (327)
T ss_pred HHcCCCCC
Confidence 99998543
|
|
| >cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors | Back alignment and domain information |
|---|
Probab=93.55 E-value=6.6 Score=36.89 Aligned_cols=149 Identities=13% Similarity=0.074 Sum_probs=88.4
Q ss_pred cCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEE
Q 008863 95 KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIY 174 (550)
Q Consensus 95 ~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~ 174 (550)
..++.++|-.........+. .+...++|+|..... ... ....++ +..+....+..+++.|...|.+++++|.
T Consensus 54 ~~~vdgiIi~~~~~~~~~~~-~l~~~~iPvV~i~~~--~~~--~~~~~~---V~~d~~~~~~~a~~~L~~~G~~~I~~i~ 125 (269)
T cd06287 54 ALDIDGAILVEPMADDPQVA-RLRQRGIPVVSIGRP--PGD--RTDVPY---VDLQSAATARMLLEHLRAQGARQIALIV 125 (269)
T ss_pred ccCcCeEEEecCCCCCHHHH-HHHHcCCCEEEeCCC--CCC--CCCCCe---EeeCcHHHHHHHHHHHHHcCCCcEEEEe
Confidence 35777655321111112233 345679999998754 210 122333 4457777788888888888999999997
Q ss_pred EcCC--CCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHH
Q 008863 175 EDNV--YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFT 250 (550)
Q Consensus 175 ~~~~--~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~ 250 (550)
.... .. ....+.+++.+++.| +..... ...... ...+-...++++.+. .+++|+. .+...+..+++
T Consensus 126 ~~~~~~~~--~~R~~gf~~a~~~~g-~~~~~~-~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~gvl~ 195 (269)
T cd06287 126 GSARRNSY--LEAEAAYRAFAAEHG-MPPVVL-RVDEAG----GEEAGYAACAQLLAQHPDLDALCV--PVDAFAVGAVR 195 (269)
T ss_pred CCcccccH--HHHHHHHHHHHHHcC-CCccee-EecCCC----ChHHHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHH
Confidence 5432 22 445677888888888 653221 111111 122333455555433 4566665 67778889999
Q ss_pred HHHHcCCCCCC
Q 008863 251 EANRMGLVGKD 261 (550)
Q Consensus 251 ~a~~~g~~~~~ 261 (550)
.+++.|+.-+.
T Consensus 196 al~~~gl~vP~ 206 (269)
T cd06287 196 AATELGRAVPD 206 (269)
T ss_pred HHHHcCCCCCC
Confidence 99999986443
|
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor. |
| >COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=93.28 E-value=5.1 Score=35.05 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCCh---HHHHHHHHHhhcCCC
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPK---EAVRGELKKVQDKQS 232 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~---~d~~~~l~~i~~~~~ 232 (550)
.|+++-|+.++.+++.++.. |- ....+...+.++.+| ++|+...-+.-....+-.. ...-+..+++...++
T Consensus 107 ~Avv~aL~al~a~ri~vlTP---Y~--~evn~~e~ef~~~~G-feiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~ 180 (238)
T COG3473 107 TAVVEALNALGAQRISVLTP---YI--DEVNQREIEFLEANG-FEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDA 180 (238)
T ss_pred HHHHHHHHhhCcceEEEecc---ch--hhhhhHHHHHHHhCC-eEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCC
Confidence 46778889999999999984 44 567788899999999 9988765443221000011 123455667777799
Q ss_pred eEEEEEcCCHHHHHHHHHHHHH-cCC
Q 008863 233 RVFIVLQASLDMTIHLFTEANR-MGL 257 (550)
Q Consensus 233 ~~ii~~~~~~~~~~~il~~a~~-~g~ 257 (550)
|.|++ .|..-....++..+.+ .|.
T Consensus 181 DaiFi-SCTnlRt~eii~~lE~~~G~ 205 (238)
T COG3473 181 DAIFI-SCTNLRTFEIIEKLERDTGV 205 (238)
T ss_pred CeEEE-EeeccccHHHHHHHHHHhCC
Confidence 99999 8888777777777765 443
|
|
| >cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea | Back alignment and domain information |
|---|
Probab=92.68 E-value=2.2 Score=39.90 Aligned_cols=89 Identities=18% Similarity=0.205 Sum_probs=69.1
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
=+||+|.+...........||...++..| |+.++......+..|+..+.+.+..++. +++.+|++... ...+.
T Consensus 121 ~kVG~I~g~~~~~~~~~~~gF~~G~~~~~---p~~~v~~~~~g~~~D~~~a~~~a~~l~~-~G~DvI~~~~~---~~g~~ 193 (258)
T cd06353 121 NKVGYVAAFPIPEVVRGINAFALGARSVN---PDATVKVIWTGSWFDPAKEKEAALALID-QGADVIYQHTD---SPGVI 193 (258)
T ss_pred CcEEEEcCcccHHHHHHHHHHHHHHHHHC---CCcEEEEEEecCCCCcHHHHHHHHHHHH-CCCcEEEecCC---ChHHH
Confidence 37999988765445567789999999888 5678877777788899999999999997 69999987652 23455
Q ss_pred HhhccCCccEEeccCC
Q 008863 115 EIASRVQVPILSFAAP 130 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~ 130 (550)
..+.+.++..|.....
T Consensus 194 ~aa~~~g~~~IG~d~d 209 (258)
T cd06353 194 QAAEEKGVYAIGYVSD 209 (258)
T ss_pred HHHHHhCCEEEeeccc
Confidence 6667788999987644
|
Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold. |
| >TIGR00035 asp_race aspartate racemase | Back alignment and domain information |
|---|
Probab=91.18 E-value=3.2 Score=37.97 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEec
Q 008863 81 DPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (550)
Q Consensus 81 ~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~ 127 (550)
++...+..+.+.+.+.++.+|+=+-++.... +..+-+..++|+|+.
T Consensus 59 ~~~~~l~~~~~~L~~~g~d~iviaCNTah~~-~~~l~~~~~iPii~i 104 (229)
T TIGR00035 59 RPRPILIDIAVKLENAGADFIIMPCNTAHKF-AEDIQKAIGIPLISM 104 (229)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCccHHHH-HHHHHHhCCCCEech
Confidence 3555555555555567888777544333322 444555567888773
|
|
| >PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria | Back alignment and domain information |
|---|
Probab=90.37 E-value=17 Score=34.86 Aligned_cols=199 Identities=13% Similarity=0.127 Sum_probs=103.2
Q ss_pred EEEEEEEecC---CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 35 TKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 35 i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
.+|+++++-. ..+......|++.+.++. .+ +++...+... ++....+.+.++.+ ++...|++.. ....
T Consensus 2 ~~v~~~~~g~~~D~g~n~~~~~G~~~~~~~~----~~--i~~~~~e~~~~~~~~~~~~~~~~~~-~g~dlIi~~g-~~~~ 73 (306)
T PF02608_consen 2 KKVALLDPGGINDKGFNQSAYEGLKRAEKEL----DG--IEIIYVENVPETDADYEEAIRQLAD-QGYDLIIGHG-FEYS 73 (306)
T ss_dssp EEEEEESSS-CCCSSHHHHHHHHHHHHHHHC----TT--EEEEEEES-S-TCHHHHHHHHHHHH-TT-SEEEEES-GGGH
T ss_pred eEEEEEECCCCCCccHHHHHHHHHHHHHHHc----CC--ceEEEEecCCccHHHHHHHHHHHHH-cCCCEEEEcc-HHHH
Confidence 4677777765 334455666666666664 13 4444444433 34455666666665 6888888743 3444
Q ss_pred HHHHHhhccC-CccEEeccCCCCCCcccCCCCCeEEEEecCc---HHhHHHHHHHHHHcCCeEEEEEE---EcC-CCCCc
Q 008863 111 AVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASND---SEQMKCIADLARKYNWRRVAAIY---EDN-VYGGD 182 (550)
Q Consensus 111 ~~v~~~~~~~-~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~al~~~l~~~~w~~v~ii~---~~~-~~g~~ 182 (550)
.++..++.++ ++-++..... ..... +++..+.... ..++-.++.++.+ -.+++++. ..+ +.-
T Consensus 74 ~~~~~vA~~yPd~~F~~~d~~--~~~~~----~Nv~~~~f~~~e~~fLaG~~Aa~~tk--t~~vg~ig~i~G~~~p~~-- 143 (306)
T PF02608_consen 74 DALQEVAKEYPDTKFIIIDGY--IDAPE----PNVISITFREEEASFLAGYLAALMTK--TGKVGFIGDIGGMDIPPV-- 143 (306)
T ss_dssp HHHHHHHTC-TTSEEEEESS-----ST-----TTEEEEEE-HHHHHHHHHHHHHHHHS--STEEEEEEEEES--SCTT--
T ss_pred HHHHHHHHHCCCCEEEEEecC--cCCCC----CcEEEEEccccchhHHHHHHHHHHhc--cCcccccccccCCCcHhH--
Confidence 5666777776 5555555443 11111 3344444432 2233334444443 35788887 433 322
Q ss_pred chhHHHHHHHHhcCCC-eEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 183 SGKLALLAEALQNVSS-SEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~-~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
..+...|...++..+. +++.... ..... +...-+...+.+-+.++|+|+- .+.. ....++.++++.|..
T Consensus 144 ~~~~~gF~~Ga~~~np~i~v~~~~-~gs~~----D~~~~~~~a~~li~~GaDvI~~-~ag~-~~~gv~~aa~e~g~~ 213 (306)
T PF02608_consen 144 NRFINGFIAGAKYVNPDIKVNVSY-TGSFN----DPAKAKEAAEALIDQGADVIFP-VAGG-SGQGVIQAAKEAGVY 213 (306)
T ss_dssp HHHHHHHHHHHHHTTTT-EEEEEE--SSSS-----HHHHHHHHHHHHHTT-SEEEE-E-CC-CHHHHHHHHHHHTHE
T ss_pred HHHHHHHHHHHHHhCcCceEEEEE-cCCcC----chHHHHHHHHHHhhcCCeEEEE-CCCC-CchHHHHHHHHcCCc
Confidence 5666777777765540 4443322 22211 2233455556677789999998 5543 445678888888864
|
All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A. |
| >PRK10200 putative racemase; Provisional | Back alignment and domain information |
|---|
Probab=89.98 E-value=4.4 Score=37.04 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEe
Q 008863 79 NRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (550)
Q Consensus 79 ~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is 126 (550)
..+|...+...++.+.+.|+.+|+=|-.+.... ...+-+..++|+|+
T Consensus 57 ~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~-~~~l~~~~~iPii~ 103 (230)
T PRK10200 57 WDKTGDILAEAALGLQRAGAEGIVLCTNTMHKV-ADAIESRCSLPFLH 103 (230)
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCchHHHH-HHHHHHhCCCCEee
Confidence 345777777777777778888888654443333 45555667788777
|
|
| >COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.8 Score=39.62 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=43.5
Q ss_pred CcchhHHH-HHHHHHHHHhccccccccCCCCCCCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC
Q 008863 1 MNRFFFLV-LIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN 79 (550)
Q Consensus 1 M~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~ 79 (550)
|+.+..+. ++++++++++|..+.+.+. .+|+||+.-..++ .-++..++-+.++ -|++|+++.+.+.
T Consensus 1 m~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~I~vg~~~~p~a---~ile~~~k~~~~k-----~Gi~l~i~~FtDY 67 (268)
T COG1464 1 MKKLKKLALALVALLALAACGAAAAKAT-----KTIKVGATPGPHA---EILEVVVKPALKK-----KGLDLKIVEFTDY 67 (268)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhccccC-----CcEEEeecCCchH---HHHHHHHHHHHHh-----cCceEEEEEecCC
Confidence 44443333 3333344555554433322 5899998754432 2333355555555 3899999999988
Q ss_pred CCHHHHHH
Q 008863 80 RDPFQAAT 87 (550)
Q Consensus 80 ~~~~~a~~ 87 (550)
..|..|+.
T Consensus 68 ~~PN~AL~ 75 (268)
T COG1464 68 VQPNEALA 75 (268)
T ss_pred cchhHHHh
Confidence 88887763
|
|
| >PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A | Back alignment and domain information |
|---|
Probab=88.72 E-value=2.9 Score=35.47 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=59.2
Q ss_pred HHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHH-HHhhcCCCeEEEE
Q 008863 159 ADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGEL-KKVQDKQSRVFIV 237 (550)
Q Consensus 159 ~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l-~~i~~~~~~~ii~ 237 (550)
+++|...|.+++++|.............+.+++.+++.| +........... ...+..... ..+++..++.||.
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~pdaii~ 74 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHG-IEFEELIFFSDD-----DSEDAREAQLLWLRRLRPDAIIC 74 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTT-SEEEGEEEEESS-----SHHHHHHHHHHHHHTCSSSEEEE
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCC-CCCCeeEeecCC-----cchhHHHHHHHHHhcCCCcEEEE
Confidence 467888899999999944321111556677888999999 775544433322 222333222 2333336676665
Q ss_pred EcCCHHHHHHHHHHHHHcCCC
Q 008863 238 LQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 238 ~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+...+..++..+.+.|+.
T Consensus 75 --~~~~~a~~~~~~l~~~g~~ 93 (160)
T PF13377_consen 75 --SNDRLALGVLRALRELGIR 93 (160)
T ss_dssp --SSHHHHHHHHHHHHHTTSC
T ss_pred --cCHHHHHHHHHHHHHcCCc
Confidence 7888899999999999984
|
... |
| >PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=88.29 E-value=13 Score=32.23 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=63.7
Q ss_pred HhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcC--CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC
Q 008863 153 EQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNV--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK 230 (550)
Q Consensus 153 ~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~--g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~ 230 (550)
++...+.+.+...++ ++.++....+ ..+.+.+.+.+. + +.|+.... ... +..+....++.|.++
T Consensus 35 dl~~~l~~~~~~~~~-~ifllG~~~~------~~~~~~~~l~~~yP~-l~ivg~~~--g~f----~~~~~~~i~~~I~~~ 100 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGK-RIFLLGGSEE------VLEKAAANLRRRYPG-LRIVGYHH--GYF----DEEEEEAIINRINAS 100 (172)
T ss_pred HHHHHHHHHHHHcCC-eEEEEeCCHH------HHHHHHHHHHHHCCC-eEEEEecC--CCC----ChhhHHHHHHHHHHc
Confidence 456666666666654 7778876544 344455555544 4 56655432 211 335678899999999
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 231 QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 231 ~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
++|+|++ .........++.+.++..-.+ +|+..+..
T Consensus 101 ~pdiv~v-glG~PkQE~~~~~~~~~l~~~---v~i~vG~~ 136 (172)
T PF03808_consen 101 GPDIVFV-GLGAPKQERWIARHRQRLPAG---VIIGVGGA 136 (172)
T ss_pred CCCEEEE-ECCCCHHHHHHHHHHHHCCCC---EEEEECch
Confidence 9999999 777777777777766643322 66665553
|
Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process |
| >cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability | Back alignment and domain information |
|---|
Probab=87.24 E-value=24 Score=32.51 Aligned_cols=185 Identities=10% Similarity=0.085 Sum_probs=102.1
Q ss_pred EEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHHh
Q 008863 37 IGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEI 116 (550)
Q Consensus 37 IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~ 116 (550)
|.+++|.-...-.+...+++.++++. |+ ..+.+..+..+. .+...+.++ .++.++|=-............
T Consensus 2 ~~~~~~~~~~~~~~~~~~i~~~l~~~-----g~-~~l~~~~~~~~~---~~~~~~~~~-~~vdGvIi~~~~~~~~~~~~~ 71 (247)
T cd06276 2 ILLLLNKLSSFKEIIYNSFVNTLGKN-----AQ-VDLYFHHYNEDL---FKNIISNTK-GKYSGYVVMPHFKNEIQYFLL 71 (247)
T ss_pred EEEEEecCchHHHHHHHHHHHHHHhc-----Cc-EEEEEEcCchHH---HHHHHHHHh-cCCCEEEEecCCCCcHHHHHH
Confidence 55666554222223444544444442 51 333344333222 223333333 456655521111111223445
Q ss_pred hccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH--cCCeEEEEEEEcC-CCCCcchhHHHHHHHH
Q 008863 117 ASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDN-VYGGDSGKLALLAEAL 193 (550)
Q Consensus 117 ~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~--~~w~~v~ii~~~~-~~g~~~~~~~~l~~~l 193 (550)
+...++|++...-. .+. ...+++ +..++...+..+++.+.. .|.+++++|.... ..+ ....+.+++.+
T Consensus 72 ~~~~~~PvV~i~~~--~~~--~~~~~~---V~~D~~~~~~~a~~~L~~~~~G~~~Ia~i~~~~~~~~--~~R~~gf~~~l 142 (247)
T cd06276 72 KKIPKEKLLILDHS--IPE--GGEYSS---VAQDFEKAIYNALQEGLEKLKKYKKLILVFPNKTAIP--KEIKRGFERFC 142 (247)
T ss_pred hccCCCCEEEEcCc--CCC--CCCCCe---EEEccHHHHHHHHHHHHHHhcCCCEEEEEecCccHhH--HHHHHHHHHHH
Confidence 55578999987754 211 112233 556788888888999888 8999999997644 233 56678899999
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
++.| +.... ... . .. .. + ...++|+ +.+...+..+++.+++.|+.-+
T Consensus 143 ~~~g-~~~~~---~~~------~-~~--~~---~--~~~~ai~--~~~d~~A~g~~~~l~~~g~~iP 189 (247)
T cd06276 143 KDYN-IETEI---IND------Y-EN--RE---I--EKGDLYI--ILSDTDLVFLIKKARESGLLLG 189 (247)
T ss_pred HHcC-CCccc---ccc------c-ch--hh---c--cCCcEEE--EeCHHHHHHHHHHHHHcCCcCC
Confidence 9988 64321 100 0 01 00 1 1235444 5678888899999999998544
|
Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t |
| >PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria | Back alignment and domain information |
|---|
Probab=86.84 E-value=4 Score=39.24 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=64.9
Q ss_pred EEEEEEE---ecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 35 TKIGAIV---DANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 35 i~IG~i~---~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
=+||.+- ......-.....||...++.+| |+.++......+-.|+..+.+.+..|+. +++.+|+.. ......
T Consensus 127 ~~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~n---p~i~v~~~~~gs~~D~~~~~~~a~~li~-~GaDvI~~~-ag~~~~ 201 (306)
T PF02608_consen 127 GKVGFIGDIGGMDIPPVNRFINGFIAGAKYVN---PDIKVNVSYTGSFNDPAKAKEAAEALID-QGADVIFPV-AGGSGQ 201 (306)
T ss_dssp TEEEEEEEEES--SCTTHHHHHHHHHHHHHTT---TT-EEEEEE-SSSS-HHHHHHHHHHHHH-TT-SEEEEE--CCCHH
T ss_pred CcccccccccCCCcHhHHHHHHHHHHHHHHhC---cCceEEEEEcCCcCchHHHHHHHHHHhh-cCCeEEEEC-CCCCch
Confidence 3566666 5555555678899999999999 6788888888888999999999999998 799999972 234455
Q ss_pred HHHHhhccCCcc--EEeccCC
Q 008863 112 VVAEIASRVQVP--ILSFAAP 130 (550)
Q Consensus 112 ~v~~~~~~~~iP--~is~~~~ 130 (550)
.+...|.+.+.. .|.....
T Consensus 202 gv~~aa~e~g~~~~~IG~d~d 222 (306)
T PF02608_consen 202 GVIQAAKEAGVYGYVIGVDSD 222 (306)
T ss_dssp HHHHHHHHHTHETEEEEEES-
T ss_pred HHHHHHHHcCCceEEEEeccc
Confidence 566677888887 7776544
|
All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A. |
| >COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.74 E-value=5 Score=39.41 Aligned_cols=94 Identities=13% Similarity=0.131 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
..+.+.+.+..+|++++.||++..-.. ....+.+.+.++..+ +.+.....+.+.. ..+....-+..+++.++|
T Consensus 16 ~l~~l~~~~~~~g~~r~liVTd~~~~~--~g~~~~v~~~L~~~~-i~~~if~~v~p~P----~~~~v~~~~~~~~~~~~D 88 (377)
T COG1454 16 SLKELGEEVKRLGAKRALIVTDRGLAK--LGLLDKVLDSLDAAG-IEYEVFDEVEPEP----TIETVEAGAEVAREFGPD 88 (377)
T ss_pred hHHHHHHHHHhcCCCceEEEECCcccc--chhHHHHHHHHHhcC-CeEEEecCCCCCC----CHHHHHHHHHHHHhcCCC
Confidence 456677788889999999999887544 668999999999999 8776655555544 556778888999999999
Q ss_pred EEEEEc-CCHHHHHHHHHHHHH
Q 008863 234 VFIVLQ-ASLDMTIHLFTEANR 254 (550)
Q Consensus 234 ~ii~~~-~~~~~~~~il~~a~~ 254 (550)
.||-+. +|.-++...+.....
T Consensus 89 ~iIalGGGS~~D~AK~i~~~~~ 110 (377)
T COG1454 89 TIIALGGGSVIDAAKAIALLAE 110 (377)
T ss_pred EEEEeCCccHHHHHHHHHHHhh
Confidence 999722 233455555554444
|
|
| >COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.25 E-value=30 Score=32.63 Aligned_cols=205 Identities=10% Similarity=0.095 Sum_probs=108.7
Q ss_pred CcEEEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeE-EEEcCCChHHH
Q 008863 33 EVTKIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVK-VIAGMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~-aiiG~~~s~~~ 110 (550)
+...||+..|.-. ..-..-..+|.-+.+.+ |.++. +.+...+...-+.....++++ ++. .||++..+...
T Consensus 24 ~d~~IGis~~d~~~eRW~~D~~~~~~~~e~~-----g~k~~--~q~A~~~~~~Q~~qien~i~q-g~~vlvi~a~d~~~l 95 (341)
T COG4213 24 KDGVIGISMPDLRSERWIKDRDAFVKKAEAL-----GAKVD--VQSADGDEEKQLAQIENMINQ-GVKVLVIGAIDGGVL 95 (341)
T ss_pred cCCeEEEEcCChhHhhhhhhhHHHHHHHHhc-----cchhh--hhhhccChhHHHHHHHHHHhc-CCCEEEEEeccchhH
Confidence 4789999987642 11112223343333333 33433 344555677778888999985 554 56689998888
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHH----hHHHHHHHHHHcC---CeEEEEEE-EcCCCCC-
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSE----QMKCIADLARKYN---WRRVAAIY-EDNVYGG- 181 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~al~~~l~~~~---w~~v~ii~-~~~~~g~- 181 (550)
..+...+...+||+|++.-- .......|. +.-+... |+.++.+-++... =..+.++. +.++...
T Consensus 96 ~~~i~~A~~~gikViaYDRl-----I~n~dvd~Y--vsFDN~~VG~lQa~~l~~~lk~k~~~~~gn~~l~~GSp~DnNA~ 168 (341)
T COG4213 96 SNAVEKAKSEGIKVIAYDRL-----INNADVDFY--VSFDNEKVGELQAKALVKGLKLKPLTSEGNYVLLGGSPDDNNAK 168 (341)
T ss_pred HHHHHHHHHcCCeEEEeecc-----cccCCccEE--EEecchhHHHHHHHHHHHHhccCCCCCCCCEEEecCCCCCcchH
Confidence 88888899999999997532 222333333 3333333 4444444443322 12233443 3333110
Q ss_pred --cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc---CCCeEEEEEcCCHHHHHHHHHHHHHcC
Q 008863 182 --DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD---KQSRVFIVLQASLDMTIHLFTEANRMG 256 (550)
Q Consensus 182 --~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~---~~~~~ii~~~~~~~~~~~il~~a~~~g 256 (550)
......-|+..+..-. +.++.....+... + ......+..+.. .+.+.|+- .+...+.-.+.++...|
T Consensus 169 lf~~G~m~VLkp~idsGk-ik~~Ge~~~d~W~----p-s~Aq~~men~lta~~~~vdaVvA--~nDgtagGaI~aL~a~G 240 (341)
T COG4213 169 LFFAGAMKVLKPLIDSGK-IKVVGEQWTDGWL----P-SNAQQIMENLLTANYNDIDAVVA--PNDGTAGGAIAALKAQG 240 (341)
T ss_pred HHHhcHHHHHHHHhhCCc-eEEeeeccccccC----H-HHHHHHHHHHHhcccCceeEEEc--CCCchhHHHHHHHHhcc
Confidence 0122333444444433 6664444333221 1 122233333332 24555555 34466777889999999
Q ss_pred CCCC
Q 008863 257 LVGK 260 (550)
Q Consensus 257 ~~~~ 260 (550)
+.++
T Consensus 241 l~g~ 244 (341)
T COG4213 241 LAGK 244 (341)
T ss_pred cCCC
Confidence 9854
|
|
| >PRK09860 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.93 E-value=7.1 Score=38.89 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
....+.+.++.+|.+++.++++..-.. ....+.+.+.+++.| +.+.....+.+.. ..++..+..+.+++.++|
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~~~~~--~g~~~~v~~~L~~~~-i~~~~f~~v~~np----~~~~v~~~~~~~~~~~~D 90 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDNMLTK--LGMAGDVQKALEERN-IFSVIYDGTQPNP----TTENVAAGLKLLKENNCD 90 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhh--CccHHHHHHHHHHcC-CeEEEeCCCCCCc----CHHHHHHHHHHHHHcCCC
Confidence 345577888999999999998754322 346788999999988 7654333343332 456788888889999999
Q ss_pred EEEEEcC-CHHHHHHHHHH
Q 008863 234 VFIVLQA-SLDMTIHLFTE 251 (550)
Q Consensus 234 ~ii~~~~-~~~~~~~il~~ 251 (550)
.||-+.+ +.-++.+.+..
T Consensus 91 ~IiaiGGGS~iD~AK~ia~ 109 (383)
T PRK09860 91 SVISLGGGSPHDCAKGIAL 109 (383)
T ss_pred EEEEeCCchHHHHHHHHHH
Confidence 9996232 33344444443
|
|
| >cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins | Back alignment and domain information |
|---|
Probab=85.17 E-value=10 Score=32.73 Aligned_cols=102 Identities=13% Similarity=-0.015 Sum_probs=61.1
Q ss_pred HHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC
Q 008863 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ 231 (550)
Q Consensus 152 ~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~ 231 (550)
.++...+.+.+...+ .++.++.+..+.. ....+.+++... | +.++....-+. ...+....+++|.+++
T Consensus 32 ~dl~~~ll~~~~~~~-~~v~llG~~~~~~--~~~~~~l~~~yp--~-l~i~g~~~g~~------~~~~~~~i~~~I~~~~ 99 (171)
T cd06533 32 SDLMPALLELAAQKG-LRVFLLGAKPEVL--EKAAERLRARYP--G-LKIVGYHHGYF------GPEEEEEIIERINASG 99 (171)
T ss_pred HHHHHHHHHHHHHcC-CeEEEECCCHHHH--HHHHHHHHHHCC--C-cEEEEecCCCC------ChhhHHHHHHHHHHcC
Confidence 345666666666554 6777777654432 333333333332 4 66665332221 2234445899999999
Q ss_pred CeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 232 SRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 232 ~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
+|+|++ .........++.+..+..-.+ +++....
T Consensus 100 pdiv~v-glG~PkQE~~~~~~~~~l~~~---v~~~vG~ 133 (171)
T cd06533 100 ADILFV-GLGAPKQELWIARHKDRLPVP---VAIGVGG 133 (171)
T ss_pred CCEEEE-ECCCCHHHHHHHHHHHHCCCC---EEEEece
Confidence 999999 888887778887777655222 5665444
|
E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan. |
| >PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=3.1 Score=39.11 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=41.0
Q ss_pred CcchhHHHHHHHHHHHHhccccccccCCCCCCCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC
Q 008863 1 MNRFFFLVLIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR 80 (550)
Q Consensus 1 M~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~ 80 (550)
||+.++++++++++++++|+. .+. .+++|+||..-... . .-..++.+.+-.. .|++++++.+++..
T Consensus 5 ~~~~~~~~~~~~~l~l~gC~~-~~~-----~~~~I~IG~~~~~~-----~--~~~~~~~~~l~~~-~G~~Vel~~f~~~~ 70 (271)
T PRK11063 5 FKTFAAVGALIGTLALVGCGQ-DEK-----DPNHIKVGVIVGAE-----Q--QVAEVAQKVAKEK-YGLDVELVTFNDYV 70 (271)
T ss_pred HHHHHHHHHHHHHHHHHhccc-ccC-----CCCcEEEEeCCCCh-----H--HHHHHHHHHHHHh-cCCeEEEEEecCcH
Confidence 444444444443444445532 111 22469999985221 1 1233444444332 38999999987655
Q ss_pred CHHHHHHHHHHhhhcCCeEEEE
Q 008863 81 DPFQAATAAQELINKEKVKVIA 102 (550)
Q Consensus 81 ~~~~a~~~~~~li~~~~v~aii 102 (550)
.+..++ ....+.+.+
T Consensus 71 ~~~~AL-------a~GdID~~~ 85 (271)
T PRK11063 71 LPNEAL-------SKGDIDANA 85 (271)
T ss_pred HHHHHH-------HcCCcceec
Confidence 444333 234666643
|
|
| >TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein | Back alignment and domain information |
|---|
Probab=84.32 E-value=1.1 Score=41.67 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=42.0
Q ss_pred ccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeeceeee
Q 008863 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLLF 539 (550)
Q Consensus 486 ~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti~ 539 (550)
.+.++..||.+++++.+|.+ +++++. ++|+.++..|..|++|+++.+....
T Consensus 46 ~~~~~~~~l~~~l~~~~g~~--v~~~~~-~~~~~~~~~l~~g~~Di~~~~~~~~ 96 (254)
T TIGR01098 46 NLTRRWEPLADYLEKKLGIK--VQLFVA-TDYSAVIEAMRFGRVDIAWFGPSSY 96 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCc--EEEEeC-CCHHHHHHHHHcCCccEEEECcHHH
Confidence 46677789999999999988 666653 4699999999999999999776543
|
A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates. |
| >PRK15454 ethanol dehydrogenase EutG; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=9.3 Score=38.25 Aligned_cols=81 Identities=9% Similarity=-0.002 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
..+.+.+.++.+|.+++.++.+..-.. ....+.+.+.|++.| +.+.....+.+.. ..+...+.++..++.++|
T Consensus 36 ~~~~l~~~~~~~g~~~~lvv~~~~~~~--~g~~~~v~~~L~~~g-i~~~~~~~v~~~P----~~~~v~~~~~~~r~~~~D 108 (395)
T PRK15454 36 AVSSCGQQAQTRGLKHLFVMADSFLHQ--AGMTAGLTRSLAVKG-IAMTLWPCPVGEP----CITDVCAAVAQLRESGCD 108 (395)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhh--CccHHHHHHHHHHcC-CeEEEECCCCCCc----CHHHHHHHHHHHHhcCcC
Confidence 345677888889988888887654322 446788999999988 7765432233322 445678888889999999
Q ss_pred EEEEEcCCH
Q 008863 234 VFIVLQASL 242 (550)
Q Consensus 234 ~ii~~~~~~ 242 (550)
.||- .+.+
T Consensus 109 ~Iia-vGGG 116 (395)
T PRK15454 109 GVIA-FGGG 116 (395)
T ss_pred EEEE-eCCh
Confidence 9998 4443
|
|
| >PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C | Back alignment and domain information |
|---|
Probab=83.44 E-value=9.2 Score=35.35 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEE
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~i 235 (550)
..+.++++.++.+++.+|++.+.| ....+.+.+.+++.| +++.......... +..+......+++..+++.|
T Consensus 8 ~~l~~~l~~~~~~~~lvv~d~~t~---~~~g~~v~~~l~~~g-~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~i 79 (250)
T PF13685_consen 8 DKLPEILSELGLKKVLVVTDENTY---KAAGEKVEESLKSAG-IEVAVIEEFVGDA----DEDEVEKLVEALRPKDADLI 79 (250)
T ss_dssp GGHHHHHGGGT-SEEEEEEETTHH---HHHHHHHHHHHHTTT--EEEEEE-EE-------BHHHHHHHHTTS--TT--EE
T ss_pred HHHHHHHHhcCCCcEEEEEcCCHH---HHHHHHHHHHHHHcC-CeEEEEecCCCCC----CHHHHHHHHHHhcccCCCEE
Confidence 346678888888999999998765 456788999999999 8887433122211 34456666677766788888
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 236 IVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 236 i~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
+- .+++.-.-..=..+.+.++ .|+-+.|
T Consensus 80 i~-vGgG~i~D~~K~~A~~~~~---p~isVPT 107 (250)
T PF13685_consen 80 IG-VGGGTIIDIAKYAAFELGI---PFISVPT 107 (250)
T ss_dssp EE-EESHHHHHHHHHHHHHHT-----EEEEES
T ss_pred EE-eCCcHHHHHHHHHHHhcCC---CEEEecc
Confidence 87 6666543333334555554 2444443
|
|
| >COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.10 E-value=23 Score=34.64 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=67.1
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
+-+||.+.......-.....||...++..|. .+++...+..+-.|+..+.+.+..|++ +|+.+|+....+.....+
T Consensus 161 ~~~vG~vgg~~~p~v~~f~~gF~~Gak~~np---~i~v~v~~~gsf~D~~k~k~~a~~li~-~GaDVI~~~ag~~~~gv~ 236 (345)
T COG1744 161 SGKVGFVGGMDIPEVNRFINGFLAGAKSVNP---DIKVKVVYVGSFSDPAKGKEAANALID-QGADVIYPAAGGTGVGVF 236 (345)
T ss_pred CCceeEEecccchhhHHHHHHHHHHHHhhCC---CccEEEEEecCccChHHHHHHHHHHHh-cCCCEEEecCCCCcchHH
Confidence 5678888877765567888999999999994 588888888899999999999999987 699999976554443332
Q ss_pred HHhhccCCccEEeccCC
Q 008863 114 AEIASRVQVPILSFAAP 130 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~ 130 (550)
. .+.+.+.-.|.....
T Consensus 237 ~-~A~~~~~~~iGvdsD 252 (345)
T COG1744 237 Q-AAKELGAYAIGVDSD 252 (345)
T ss_pred H-HHHHhCCCeEEEecc
Confidence 0 222333333665543
|
|
| >cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway | Back alignment and domain information |
|---|
Probab=83.02 E-value=12 Score=37.21 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeE
Q 008863 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ 234 (550)
...+.++++.++.+++.++++..... ....+.+.+.+++.| +++.....+.+.. ..+...+.++..++.++|.
T Consensus 12 ~~~l~~~l~~~g~~~~liv~~~~~~~--~~~~~~v~~~L~~~g-~~~~~~~~v~~~p----~~~~v~~~~~~~~~~~~d~ 84 (370)
T cd08192 12 IKELPAECAELGIKRPLIVTDPGLAA--LGLVARVLALLEDAG-LAAALFDEVPPNP----TEAAVEAGLAAYRAGGCDG 84 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcchhh--CccHHHHHHHHHHcC-CeEEEeCCCCCCC----CHHHHHHHHHHHHhcCCCE
Confidence 45577888889999999998765432 336788999999888 7764433333332 4567788888888889999
Q ss_pred EEEEcC-CHHHHHHHHHHH
Q 008863 235 FIVLQA-SLDMTIHLFTEA 252 (550)
Q Consensus 235 ii~~~~-~~~~~~~il~~a 252 (550)
||-+.+ +.-++..++...
T Consensus 85 IIaiGGGSviD~aK~ia~~ 103 (370)
T cd08192 85 VIAFGGGSALDLAKAVALM 103 (370)
T ss_pred EEEeCCchHHHHHHHHHHH
Confidence 996232 344555555444
|
NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm |
| >cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like | Back alignment and domain information |
|---|
Probab=82.99 E-value=12 Score=37.29 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
..+.+.+.++.++-+++.++++..... ....+.+.+.+++.| +.+.....+.+.. ..+.....++.+++.++|
T Consensus 13 ~l~~l~~~l~~~g~~~~lvvt~~~~~~--~g~~~~v~~~L~~~g-~~~~~~~~v~~~p----~~~~v~~~~~~~~~~~~d 85 (374)
T cd08189 13 SLAQLPAAISQLGVKKVLIVTDKGLVK--LGLLDKVLEALEGAG-IEYAVYDGVPPDP----TIENVEAGLALYRENGCD 85 (374)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcchhh--cccHHHHHHHHHhcC-CeEEEeCCCCCCc----CHHHHHHHHHHHHhcCCC
Confidence 345677888888889999998765432 335688899999888 7655433343332 456778888888888999
Q ss_pred EEEEEcC-CHHHHHHHHHHH
Q 008863 234 VFIVLQA-SLDMTIHLFTEA 252 (550)
Q Consensus 234 ~ii~~~~-~~~~~~~il~~a 252 (550)
.||-+.+ +.-++..++...
T Consensus 86 ~IIaiGGGS~~D~aK~ia~~ 105 (374)
T cd08189 86 AILAVGGGSVIDCAKAIAAR 105 (374)
T ss_pred EEEEeCCccHHHHHHHHHHH
Confidence 9996232 344555554444
|
Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. |
| >cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism | Back alignment and domain information |
|---|
Probab=82.42 E-value=7.8 Score=39.11 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeE
Q 008863 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ 234 (550)
.+.+.++++.++.+++.++++..-.. ....+.+.+.+++.| +.+.....+.+.. ..+.....++..++.++|.
T Consensus 11 ~~~l~~~l~~~g~~~vlivt~~~~~~--~g~~~~v~~~L~~~g-i~~~~f~~v~~~p----~~~~v~~~~~~~~~~~~D~ 83 (414)
T cd08190 11 TAEVGMDLKNLGARRVCLVTDPNLAQ--LPPVKVVLDSLEAAG-INFEVYDDVRVEP----TDESFKDAIAFAKKGQFDA 83 (414)
T ss_pred HHHHHHHHHHcCCCeEEEEECcchhh--cchHHHHHHHHHHcC-CcEEEeCCCCCCc----CHHHHHHHHHHHHhcCCCE
Confidence 45677788899999999999866433 445788899998888 7665433333332 4467778888888889999
Q ss_pred EEE
Q 008863 235 FIV 237 (550)
Q Consensus 235 ii~ 237 (550)
||-
T Consensus 84 IIa 86 (414)
T cd08190 84 FVA 86 (414)
T ss_pred EEE
Confidence 987
|
Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT |
| >PRK10624 L-1,2-propanediol oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.22 E-value=8.5 Score=38.37 Aligned_cols=90 Identities=11% Similarity=0.183 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
....+.+.++.++.+++.++++..-.- ....+.+.+.+++.| +.+.....+.+.. ..++....++.+++.++|
T Consensus 17 ~l~~l~~~~~~~g~~~~lvvtd~~~~~--~g~~~~v~~~L~~~g-~~~~~~~~v~~~p----~~~~v~~~~~~~~~~~~D 89 (382)
T PRK10624 17 AIGALTDEVKRRGFKKALIVTDKTLVK--CGVVAKVTDVLDAAG-LAYEIYDGVKPNP----TIEVVKEGVEVFKASGAD 89 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcchhh--CcchHHHHHHHHHCC-CeEEEeCCCCCCc----CHHHHHHHHHHHHhcCCC
Confidence 345677888889999999998765432 346788999999888 7664432233322 446677888888888999
Q ss_pred EEEEEcC-CHHHHHHHHH
Q 008863 234 VFIVLQA-SLDMTIHLFT 250 (550)
Q Consensus 234 ~ii~~~~-~~~~~~~il~ 250 (550)
.||-+.+ +.-++..++.
T Consensus 90 ~IIaiGGGS~iD~aK~ia 107 (382)
T PRK10624 90 YLIAIGGGSPQDTCKAIG 107 (382)
T ss_pred EEEEeCChHHHHHHHHHH
Confidence 9986132 3334444433
|
|
| >PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase | Back alignment and domain information |
|---|
Probab=81.54 E-value=39 Score=30.27 Aligned_cols=126 Identities=14% Similarity=0.193 Sum_probs=69.8
Q ss_pred HhhhcCCeEEEEcCCChHHHHHHHHhh-ccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeE
Q 008863 91 ELINKEKVKVIAGMETWEETAVVAEIA-SRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRR 169 (550)
Q Consensus 91 ~li~~~~v~aiiG~~~s~~~~~v~~~~-~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~ 169 (550)
+.+.+.++.+|+-+-++ ....+..+- ...++|+++... +.+.-+.. +-++
T Consensus 59 ~~l~~~g~d~i~i~C~s-~~~~~~~~~~~~~~iPv~~~~~---------------------------a~~~~~~~-~~~r 109 (216)
T PF01177_consen 59 EKLEKAGVDAIVIACNS-AHPFVDELRKERVGIPVVGIVE---------------------------AALEAAKA-GGKR 109 (216)
T ss_dssp HHHHHTTESEEEESSHH-HHHHHHHHHHHHHSSEEEESHH---------------------------HHHHHHHH-TSSE
T ss_pred HHHHhCCCCEEEEcCCc-hhhhHHHHhhhcCceEEEeccH---------------------------HHHHHHHh-cCCE
Confidence 33345789888854333 223333344 566888777332 22444444 8889
Q ss_pred EEEEEEcCCCCCcchhHHHHHHHHhcC-CCe--EEEEEee--cC----CCCCCCCChH---HHHHHHHHh-hcCCCeEEE
Q 008863 170 VAAIYEDNVYGGDSGKLALLAEALQNV-SSS--EIQSRLV--LP----PISSISDPKE---AVRGELKKV-QDKQSRVFI 236 (550)
Q Consensus 170 v~ii~~~~~~g~~~~~~~~l~~~l~~~-g~~--~v~~~~~--~~----~~~~~~~~~~---d~~~~l~~i-~~~~~~~ii 236 (550)
++++.... ......+.+.+.+. | + .+..... +. ... .+.. .+...++++ ++.++++|+
T Consensus 110 i~vl~t~~-----~~~~~~~~~~~~~~~g-i~~~~~~~i~~~~~~~~e~~~---~~~~~~~~~~~~~~~l~~~~~~d~ii 180 (216)
T PF01177_consen 110 IGVLTTYT-----TEKSPLYEEFIEEAAG-IDDEVVAGIHNAIYDVIELGD---IPPEQIEILAEAARELIKEDGADAII 180 (216)
T ss_dssp EEEEESHH-----HHHHTHHHHHHHHCTT-EECEEEEEEEEEHTHHHHTTC---TTHHHHHHHHHHHHHHHHCTTSSEEE
T ss_pred EEEEecCc-----ccchHHHHHHHHHhcC-CcHHHHHHHHhhcHHHHhhhc---CCHHHHHHHHHHHHHHhccCCCCEEE
Confidence 99999532 33456677777776 7 6 4444210 10 111 1122 344555555 377999999
Q ss_pred EEcCCHHHHH-HHHHHHHHc
Q 008863 237 VLQASLDMTI-HLFTEANRM 255 (550)
Q Consensus 237 ~~~~~~~~~~-~il~~a~~~ 255 (550)
+ .|..-... ..+..+.+.
T Consensus 181 L-gCt~l~~~~~~~~~l~~~ 199 (216)
T PF01177_consen 181 L-GCTHLPLLLGAIEALEEE 199 (216)
T ss_dssp E-ESTTGGGGHHHHHHHHHT
T ss_pred E-CCCchHHHHHHHHhhccc
Confidence 9 66655443 666666553
|
Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A .... |
| >cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like | Back alignment and domain information |
|---|
Probab=81.39 E-value=15 Score=36.36 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeE
Q 008863 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ 234 (550)
.+.+.++++.++.+++.++++...+. ....+.+.+.+++.| +.+.....+.... ..++....++.+++.++|.
T Consensus 11 l~~l~~~l~~~~~~~~lvv~~~~~~~--~~~~~~v~~~L~~~~-~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d~ 83 (370)
T cd08551 11 IEKLGEEIKNLGGRKALIVTDPGLVK--TGVLDKVIDSLKEAG-IEVVIFDGVEPNP----TLSNVDAAVAAYREEGCDG 83 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcchhh--CccHHHHHHHHHHcC-CeEEEECCCCCCC----CHHHHHHHHHHHHhcCCCE
Confidence 46677888888999999999765432 356788999999888 7654332233332 4567888888998889999
Q ss_pred EEEEcC-CHHHHHHHHHHH
Q 008863 235 FIVLQA-SLDMTIHLFTEA 252 (550)
Q Consensus 235 ii~~~~-~~~~~~~il~~a 252 (550)
||-+.+ +.-++..++...
T Consensus 84 IiaiGGGs~~D~AK~va~~ 102 (370)
T cd08551 84 VIAVGGGSVLDTAKAIALL 102 (370)
T ss_pred EEEeCCchHHHHHHHHHHH
Confidence 886232 334455554443
|
Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 550 | ||||
| 4f11_A | 433 | Crystal Structure Of The Extracellular Domain Of Hu | 6e-11 | ||
| 4ey3_A | 368 | Crystal Structure Of Solute Binding Protein Of Abc | 3e-08 | ||
| 3lmk_A | 492 | Ligand Binding Domain Of Metabotropoc Glutamate Rec | 5e-06 | ||
| 4evs_A | 371 | Crystal Structure Of Abc Transporter From R. Palust | 5e-05 | ||
| 3ks9_A | 496 | Metabotropic Glutamate Receptor Mglur1 Complexed Wi | 7e-05 | ||
| 2e4z_A | 501 | Crystal Structure Of The Ligand-Binding Region Of T | 7e-05 | ||
| 3mq4_A | 481 | Metabotropic Glutamate Receptor Mglur7 Complexed Wi | 7e-05 | ||
| 1ewk_A | 490 | Crystal Structure Of Metabotropic Glutamate Recepto | 9e-05 | ||
| 2liv_A | 344 | Periplasmic Binding Protein Structure And Function. | 1e-04 | ||
| 2e4u_A | 555 | Crystal Structure Of The Extracellular Region Of Th | 1e-04 | ||
| 1z15_A | 344 | Crystal Structure Analysis Of Periplasmic Leu/ile/v | 1e-04 | ||
| 4f06_A | 371 | Crystal Structure Of Solute Binding Protein Of Abc | 2e-04 | ||
| 3sm9_A | 479 | Crystal Structure Of Metabotropic Glutamate Recepto | 2e-04 |
| >pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Gaba(B) Receptor Gbr2 Length = 433 | Back alignment and structure |
|
| >pdb|4EY3|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc Transporter In Complex With P-Hydroxybenzoic Acid Length = 368 | Back alignment and structure |
|
| >pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor Mglur5 Complexed With Glutamate Length = 492 | Back alignment and structure |
|
| >pdb|4EVS|A Chain A, Crystal Structure Of Abc Transporter From R. Palustris - Solute Binding Protein (Rpa0985) In Complex With 4-Hydroxybenzoate Length = 371 | Back alignment and structure |
|
| >pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With Ly341495 Antagonist Length = 496 | Back alignment and structure |
|
| >pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The Group Iii Metabotropic Glutamate Receptor Length = 501 | Back alignment and structure |
|
| >pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With Ly3414 Antagonist Length = 481 | Back alignment and structure |
|
| >pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor Subtype 1 Complexed With Glutamate Length = 490 | Back alignment and structure |
|
| >pdb|2LIV|A Chain A, Periplasmic Binding Protein Structure And Function. Refined X-Ray Structures Of The LeucineISOLEUCINEVALINE-Binding Protein And Its Complex With Leucine Length = 344 | Back alignment and structure |
|
| >pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group Ii Metabotropic Glutamate Receptor Complexed With L-glutamate Length = 555 | Back alignment and structure |
|
| >pdb|1Z15|A Chain A, Crystal Structure Analysis Of Periplasmic Leu/ile/val-binding Protein In Superopen Form Length = 344 | Back alignment and structure |
|
| >pdb|4F06|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc Transporter From Rhodopseudomonas Palustris Haa2 Rpb_2270 In Complex With P- Hydroxybenzoic Acid Length = 371 | Back alignment and structure |
|
| >pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3 Precursor In Presence Of Ly341495 Antagonist Length = 479 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 9e-67
Identities = 63/403 (15%), Positives = 150/403 (37%), Gaps = 37/403 (9%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRDHNRDPFQAATAAQEL 92
++ AI+D + G+ A+ +A + N ++ + I + RD T
Sbjct: 6 RMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQ 65
Query: 93 INKEKVKVIAGMETWEETA-VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151
I + V + G + +A V+ I ++P + TP R+ + + ++
Sbjct: 66 ILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEE-TPRLQYLRFAS-VSLYPSN 123
Query: 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS 211
+ ++ + + +N+ + I L E ++ + L + +
Sbjct: 124 EDVSLAVSRILKSFNYPSASLICAKAECLLR------LEELVR--GFLISKETLSVRMLD 175
Query: 212 SISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271
DP LK+++D + I++ A+ ++ + +A+ +G+ +I+T
Sbjct: 176 DSRDPTP----LLKEIRDDKVST-IIIDANASISHLVLRKASELGMTSAFYKYILTTMDF 230
Query: 272 NALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALR 331
L ++ LG S ++ Y EF ++ + P++ A
Sbjct: 231 PILHLDG--IVEDSSNILGF-SMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAAL 287
Query: 332 AHDSIKIITEAIGRLNY--NISSP-------------EMLLRQMLSSDFSGLSGKIRFKD 376
D++ ++ A+ LN I L+ + ++ GL+G++ F
Sbjct: 288 MFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNS 347
Query: 377 GELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDI 419
TLRI+ + ++E+ W N + ++ ++ ++
Sbjct: 348 KGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMNATTLDILEL 390
|
| >3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 4e-64
Identities = 66/402 (16%), Positives = 135/402 (33%), Gaps = 39/402 (9%)
Query: 33 EVTKIGAIVD-ANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATA 88
V + G I + S A + AV N + N L+ + N A+
Sbjct: 3 HVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASK 62
Query: 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMA 148
V I G V I + + VP + + + + +
Sbjct: 63 KACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRW---KHQVSDNKDSFYVSLY 119
Query: 149 SNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLP 208
+ S + I DL + + W+ V +Y+D+ L L +A + +
Sbjct: 120 PDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIR---LQELIKAPSRYNLRLK----IRQ 172
Query: 209 PISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268
+ D K LK+++ + I S +M + +A MG++ + +I T
Sbjct: 173 LPADTKDAKPL----LKEMKRGKEFHVIFD-CSHEMAAGILKQALAMGMMTEYYHYIFTT 227
Query: 269 TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHF----H 324
ALD S G + + +++ + P+ D
Sbjct: 228 LDLFALDVEP--YRYSGVNMTGFRILNT-ENTQVSSIIEKWSMERLQAPPKPDSGLLDGF 284
Query: 325 PSIHALRAHDSIKIITEAIGRLNYNISSP------------EMLLRQMLSSDFSGLSGKI 372
+ A +D++ +++ A+ + S + + + + GL+G+I
Sbjct: 285 MTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRI 344
Query: 373 RFKDGELLNAD-TLRIVNVVGKKYKELDFWLPNFGFSKTSSK 413
F L D L ++++ + +++ W P G + T S+
Sbjct: 345 TFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQ 386
|
| >3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 7e-64
Identities = 69/522 (13%), Positives = 154/522 (29%), Gaps = 94/522 (18%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELIN 94
+IG + + Q +A ++ + F++ +L+ I + + F A +
Sbjct: 4 QIGGLFPRGA---DQEYSAFRVGMVQFSTS--EFRLTPHIDNLEVANSFAVTNAFCSQFS 58
Query: 95 KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQ 154
+ V I G + + + V ++ + P++I+M +
Sbjct: 59 R-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPS------FPTDGTHPFVIQMRP---DL 108
Query: 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSIS 214
+ L Y W + A +Y+ + L + ++ ++ + V +
Sbjct: 109 KGALLSLIEYYQWDKFAYLYDSDRGLST---LQAVLDSAAE-KKWQVTAINVGNINNDKK 164
Query: 215 DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANAL 274
D E R + ++ K+ R I+ D + + +G K +I+ N
Sbjct: 165 D--ETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDG 221
Query: 275 DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHD 334
D L + I D S +F + EYP + +D
Sbjct: 222 DLLKIQFGGAEVSGFQI---VDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYD 278
Query: 335 SIKIITEAIGRLNYN--------------------ISSPEMLLRQMLSSDFSGLSGKIRF 374
+++++TEA L + R + GLSG I+F
Sbjct: 279 AVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKF 338
Query: 375 KDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIW 434
T+ I+ + +++ +W T +
Sbjct: 339 DQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDDTS------------------G 380
Query: 435 PGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIEL 494
P +V++K + N+ RY+G+ ++L
Sbjct: 381 LEQKTVVVTTILESP------------------YVMMKANHAALAGNE---RYEGYCVDL 419
Query: 495 FRLVVDHLNYDLPYEFVPH---------DGVYDDLINGVYDK 527
+ H + V +++ ++ +
Sbjct: 420 AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYG 461
|
| >4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 2e-56
Identities = 80/406 (19%), Positives = 157/406 (38%), Gaps = 54/406 (13%)
Query: 36 KIGAIVD-----ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATA 88
I ++ A +G+ + A+++A++ ++S R + L L++ D D + A
Sbjct: 16 SIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKA 75
Query: 89 AQELI-NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRM 147
+ I ++ G T+++AE + LSFAA L+ +++PY R
Sbjct: 76 FYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPV-LADKKKYPYFFRT 134
Query: 148 ASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVL 207
+D+ I L + Y W+RV + +D + L L EI
Sbjct: 135 VPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEV--RNDLTGVLYG-EDIEISDTESF 191
Query: 208 PPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267
+DP +KK++ R+ + Q +M +F A + G WI+
Sbjct: 192 S-----NDPCT----SVKKLKGNDVRIILG-QFDQNMAAKVFCCAYEENMYGSKYQWIIP 241
Query: 268 -----------NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSE 316
+T AN+ L ++++MEG +G+ S K S + + E
Sbjct: 242 GWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPL-SSKQIKTISGKTPQQYERE 300
Query: 317 YPEED-HFHPSIHALRAHDSIKIITEAI----------------GRLNYNISS-PEMLLR 358
Y + PS A+D I +I + + NY + ++L
Sbjct: 301 YNNKRSGVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILN 360
Query: 359 QMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPN 404
M ++F G++G++ F++GE + T++ + ++ +
Sbjct: 361 AMNETNFFGVTGQVVFRNGERMG--TIKFTQFQDSREVKVGEYNAV 404
|
| >3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376 | Back alignment and structure |
|---|
Score = 188 bits (477), Expect = 1e-54
Identities = 60/398 (15%), Positives = 126/398 (31%), Gaps = 46/398 (11%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELIN 94
+IG + + Q +A ++ + F++ +L+ I + + F A
Sbjct: 4 QIGGLFPRGA---DQEYSAFRVGMVQFSTS--EFRLTPHIDNLEVANSFAVTNAFCSQF- 57
Query: 95 KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQ 154
V I G + + + V ++ + P++I+M +
Sbjct: 58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPS------FPTDGTHPFVIQMRPD---L 108
Query: 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSIS 214
+ L Y W + A +Y+ + L + ++ ++ + V +
Sbjct: 109 KGALLSLIEYYQWDKFAYLYDSDRGLST---LQAVLDSAAE-KKWQVTAINVGNINNDKK 164
Query: 215 DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANAL 274
D E R + ++ K+ R I+ D + + +G K +I+ N
Sbjct: 165 D--ETYRSLFQDLELKKERRVILD-CERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDG 221
Query: 275 DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHD 334
D L + D S +F + EYP + +D
Sbjct: 222 DLLKIQFGGANVSGF---QIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYD 278
Query: 335 SIKIITEAIGRL---NYNISSP-----------------EMLLRQMLSSDFSGLSGKIRF 374
+++++TEA L IS + R + GLSG I+F
Sbjct: 279 AVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKF 338
Query: 375 KDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSS 412
T+ I+ + +++ +W T +
Sbjct: 339 DQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLT 376
|
| >3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 4e-52
Identities = 55/405 (13%), Positives = 130/405 (32%), Gaps = 51/405 (12%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIRDHNR-DPFQAATAAQ 90
IG + N+ Q +A + AVQ +N++ + L+ + + + F A
Sbjct: 7 SIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFC 63
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
++ V I G + + ++ + ++I+M
Sbjct: 64 SQFSR-GVYAIFGFYDQMSMNTLTSFCGALHTSFVTPS------FPTDADVQFVIQMRP- 115
Query: 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPI 210
I L Y W + +Y+ L + EA ++ ++ +R V
Sbjct: 116 --ALKGAILSLLSYYKWEKFVYLYDTERG---FSVLQAIMEAAVQ-NNWQVTARSVGNI- 168
Query: 211 SSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270
+ R ++++ +Q + ++ ++ + + +G + +++ N
Sbjct: 169 ----KDVQEFRRIIEEMDRRQEKR-YLIDCEVERINTILEQVVILGKHSRGYHYMLANLG 223
Query: 271 ANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHAL 330
+ V+ G ++++ ++F + R E+PE + +
Sbjct: 224 FTDIL--LERVMHGGANITGF-QIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSA 280
Query: 331 RAHDSIKIITEAIGRLNYNISSP--------------------EMLLRQMLSSDFSGLSG 370
HD+I +I EA L + R + G++G
Sbjct: 281 LTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTG 340
Query: 371 KIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHN 415
I+F T+ + + ++ +W F S H+
Sbjct: 341 NIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPFSGTHH 385
|
| >3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 1e-50
Identities = 50/402 (12%), Positives = 127/402 (31%), Gaps = 51/402 (12%)
Query: 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQE 91
+IG + A + A+ + L QI + D F+
Sbjct: 9 NNIQIGGLFPNQQSQEH---AAFRFALSQLTEPPK---LLPQIDIVNISDSFEMTYRFCS 62
Query: 92 LINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151
+K + G ++ + V ++ + P + +++++
Sbjct: 63 QFSKGVYAIF-GFYERRTVNMLTSFCGALHVCFITPSFP------VDTSNQFVLQLRP-- 113
Query: 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS 211
E + + + Y W+ IY+ + LQ V + + + ++
Sbjct: 114 -ELQEALISIIDHYKWQTFVYIYDADRGLS----------VLQRVLDTAAEKNWQVTAVN 162
Query: 212 SISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271
++ +E R + ++ K+ R+ +V + + + ++ G +I+ N
Sbjct: 163 ILTTTEEGYRMLFQDLEKKKERLVVV-DCESERLNAILGQIVKLEKNGIGYHYILANLGF 221
Query: 272 NALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALR 331
+D S G + + +R + + ++ D P +
Sbjct: 222 MDID--LNKFKESGANVTGF-QLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSAL 278
Query: 332 AHDSIKIITEAIGRLNYNISSP--------------------EMLLRQMLSSDFSGLSGK 371
+D +K++ EA L + R + F GL+G
Sbjct: 279 TYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGN 338
Query: 372 IRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSK 413
++F + TL ++ + +++ +W + F + +
Sbjct: 339 VQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAALE 380
|
| >3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Length = 364 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 1e-49
Identities = 54/373 (14%), Positives = 133/373 (35%), Gaps = 36/373 (9%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQ-IRDHNRDPFQAATAAQELIN 94
I I+ G A+K A + + + ++ + + DP T +L++
Sbjct: 6 GIAVILV-----GTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMS 60
Query: 95 KEKVKVIAGMETWEET---AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151
K++ + + ++ ++ I+++ PIL + ++ + +
Sbjct: 61 DRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSI 120
Query: 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSS-SEIQSRLVLPPI 210
+Q + ++ +Y+W + + D + + ++N E++ L+L
Sbjct: 121 EQQASVMLNIMEEYDWYIFSIVTTYFPGYQDF--VNKIRSTIENSFVGWELEEVLLLDM- 177
Query: 211 SSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270
+ +++ QS + I+L + + ++F AN +GL G WIV + V
Sbjct: 178 ----SLDDGDSKIQNQLKKLQSPI-ILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLV 232
Query: 271 ANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHAL 330
A D++ + + + + Y + + + + E +
Sbjct: 233 AGDTDTVPSEFPTGLISVSYDEWDYGLPARVRDGIA-IITTAASDMLSEHSFIPEPKSSC 291
Query: 331 RAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF-KDGELLNADTLRIVN 389
I ML R +++ F G + F +DG ++ L I+
Sbjct: 292 YNTHEK------------RIYQSNMLNRYLINVTFEG--RDLSFSEDGYQMHP-KLVIIL 336
Query: 390 V-VGKKYKELDFW 401
+ +K++ + W
Sbjct: 337 LNKERKWERVGKW 349
|
| >3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384 | Back alignment and structure |
|---|
Score = 169 bits (428), Expect = 2e-47
Identities = 70/429 (16%), Positives = 137/429 (31%), Gaps = 74/429 (17%)
Query: 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQ--IRDHNRDPFQAATAAQ 90
++ IGA++ K+ + AV N K+ LQ H + Q A +
Sbjct: 4 KIVNIGAVLS-----TKKHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVC 58
Query: 91 ELINKEKVKVI-----AGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLI 145
E + +V I ++ A ++P++ + S +
Sbjct: 59 EDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRM-SIYSDKSIHLSFL 117
Query: 146 RMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRL 205
R S Q ++ R +NW V I D+ G + + L S S+ ++
Sbjct: 118 RTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHE-GRAAQKKLETLLEGKESKSKKRNYE 176
Query: 206 VLPPIS-------------SISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252
L +S + + L + ++ ++RV I+L AS D ++ A
Sbjct: 177 NLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARV-IILSASEDDATAVYKSA 235
Query: 253 NRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRN 312
+ + G VW+V + P
Sbjct: 236 AMLDMTGAGYVWLVGEREISGSALRYA---------------------PDGIIGLQLING 274
Query: 313 FTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNIS---SPEMLLRQMLSSDF-SGL 368
D A+ ++ IT+ N + + + R ++SS + G+
Sbjct: 275 KNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGV 334
Query: 369 SGKIRF-KDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEG 427
+G+I F +DG+ A I+N+ +K ++ + ++
Sbjct: 335 TGRIEFNEDGDRKFA-QYSIMNLQNRKLVQVGIFNGSYIIQNDRK--------------- 378
Query: 428 FTGPVIWPG 436
+IWPG
Sbjct: 379 ----IIWPG 383
|
| >1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 1e-44
Identities = 55/397 (13%), Positives = 133/397 (33%), Gaps = 36/397 (9%)
Query: 36 KIGAIVDANSQM---GKQAITAMKIAVQNFNSDSR-------NHKLSLQIRD--HNRDPF 83
++ ++ + + A++ A+++ + + + D
Sbjct: 11 EVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRAL 70
Query: 84 QAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPY 143
+ K +I G A VA +AS +P+LS A A + +
Sbjct: 71 FSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSH 130
Query: 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQS 203
L R+A ++ + + L R ++W R A +Y D+ + E + V E
Sbjct: 131 LTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERN---CYFTLEGVHEVFQEEGLH 187
Query: 204 RLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263
+ + E + ++ RV I+ AS D + A+R G+ D
Sbjct: 188 TSIYSFDETKDLDLEDIVRNIQ----ASERVVIMC-ASSDTIRSIMLVAHRHGMTSGDYA 242
Query: 264 WIV---------TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFT 314
+ + D + + + + +++FS + +
Sbjct: 243 FFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTV-TLLRTVKPEFEKFSMEVKSSVE 301
Query: 315 SEYPEEDHFHPSIHALRAHDSIKIITEAIGRL---NYNISSPEMLLRQMLSSDFSGLSGK 371
+ + ++ HD+I + A+ + Y+ +++Q + F G++G+
Sbjct: 302 -KQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQ 360
Query: 372 IRF-KDGE-LLNADTLRIVNVVGKKYKELDFWLPNFG 406
+ +G+ + + + +V + + + G
Sbjct: 361 VSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEG 397
|
| >1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 7e-40
Identities = 61/433 (14%), Positives = 138/433 (31%), Gaps = 53/433 (12%)
Query: 36 KIGAIVDANSQM----GKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNR-----DPF 83
+ ++ + + A+++A+ + + + +
Sbjct: 4 TVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDT 63
Query: 84 QAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPY 143
A AA +L + V G A V + +VP+L+ APA + + +
Sbjct: 64 AAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPA-LGIGVKDEYAL 122
Query: 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQS 203
R + + + L R+ W A + + GD + E L +
Sbjct: 123 TTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRL-GDDRPCFFIVEGLYMRVRERLN- 180
Query: 204 RLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263
+ + + + L+ V+ ++ RV + +S D +L A GL G+D V
Sbjct: 181 -ITVNHQEFVEGDPDHYPKLLRAVR-RKGRVIYIC-SSPDAFRNLMLLALNAGLTGEDYV 237
Query: 264 WIVTNTVANAL---------------DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL 308
+ + +L D + + + + I +Y D+ Y EF
Sbjct: 238 FFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKII-TYKEPDNPEYLEFLKQ 296
Query: 309 FRRNFTSEY-PEEDHFHPSIHALRAHDSIKIITEAIGRL---NYNISSPEMLLRQMLSSD 364
+ ++ + +I HD + + +A+ ++ E + ++M +
Sbjct: 297 LKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRS 356
Query: 365 FSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIA 424
F G++G ++ N D ++ D F + + ++
Sbjct: 357 FQGVTGYLKIDR----NGDRDTDFSL-------WDMDPETGAFRVVLNYNGTSQELMAVS 405
Query: 425 AEGFTGPVIWPGN 437
+ WP
Sbjct: 406 EH----KLYWPLG 414
|
| >4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Length = 375 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 53/390 (13%), Positives = 123/390 (31%), Gaps = 52/390 (13%)
Query: 32 EEVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATA 88
K+G ++ + +G+ +++ VQ+ +S D P +A
Sbjct: 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATEL 73
Query: 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPLSMSRRWPYLIR 146
+LI EK V+ G + +IA +P + A +T + P + R
Sbjct: 74 TTKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCA---PNVFR 130
Query: 147 MASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNV---SSSEIQS 203
+ + + + D K ++ + G + + + E+
Sbjct: 131 TSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEE------MVSGFKKSFTAGKGEV-- 182
Query: 204 RLVLPPISSISDPKEAV--RGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL---- 257
+ I+ V + L ++ + + + + L
Sbjct: 183 ------VKDITIAFPDVEFQSALAEIASLKPDCVYAFFSG-GGALKFIKDYAAANLGIPL 235
Query: 258 VGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEY 317
G ++ A A + +G + Y SD + + F ++F + Y
Sbjct: 236 WGPG--FLTDGVEAAAGP--------AGDGIKTVLHYVSDLDNAE---NQAFVKSFEAAY 282
Query: 318 PEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF-KD 376
P + A++ D+ +++ + + +++ + L M ++ F+ G +
Sbjct: 283 KIP----PDVFAVQGWDAGQLLDAGVKAVGGDVAKRKELNAAMAAASFASPRGPFKLSAA 338
Query: 377 GELLNADTLRIVNVVGKKYKELDFWLPNFG 406
+ LR + G K L P
Sbjct: 339 HNPVQNFYLRE--LKGGKSVNLGLAAPAVA 366
|
| >4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Length = 368 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 73/379 (19%), Positives = 140/379 (36%), Gaps = 38/379 (10%)
Query: 32 EEVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATA 88
E+ K+G IV + GKQ A+K+ ++ K+ + ++D P
Sbjct: 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKRL 63
Query: 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPLSMSRRWPYLIR 146
AQELI +KV VIAG A +A++ +VP + AA +T S PY++R
Sbjct: 64 AQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITERS-----PYIVR 118
Query: 147 MASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL--ALLAEALQNVSSSEIQSR 204
+ ++ I D A K ++VA + D G D+ +
Sbjct: 119 TSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEI---- 174
Query: 205 LVLPPISSISDPKEAVRGELKKVQDKQS-RVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263
+ L++++D + +F+ + A + + GL
Sbjct: 175 -------KVPLANPDFAPFLQRMKDAKPDAMFVFVPA--GQGGNFMKQFAERGLDKSGIK 225
Query: 264 WIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHF 323
I V + D L ++ + G + Y + S + F + E+ +
Sbjct: 226 VIGPGDVMD--DDLLNSMGDAALGVVTAHMYSAAHPSAM---NKEFVAAYKKEFGQR--- 277
Query: 324 HPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF--KDGELLN 381
P A+ +D I ++ EA+ + + + L+ M + G I + +++
Sbjct: 278 -PGFMAVGGYDGIHLVFEALKKTG-GKADGDSLIAAMKGMKWESPRGPISIDPETRDIVQ 335
Query: 382 ADTLRIVNVVGKKYKELDF 400
+R V V + ++F
Sbjct: 336 NIYIRKVEKVDGELYNIEF 354
|
| >3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Length = 387 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 66/381 (17%), Positives = 129/381 (33%), Gaps = 38/381 (9%)
Query: 32 EEVTKIGAIVD--ANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRDHNRDPFQAA 86
E +IG I ++AV+ N+ L + RD DP +A
Sbjct: 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAV 62
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPLSMSRRWPYL 144
TAAQEL+ + V +AG V++ A + +V ++ A+T + Y
Sbjct: 63 TAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGN---RYT 119
Query: 145 IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSR 204
R+ + Q +A A K R A I + YG + +A E L +R
Sbjct: 120 YRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSA--VARFKELLL-------AAR 170
Query: 205 LVLPPISSISDPKEAV--RGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262
+ ++ + ++ +Q + + E GL
Sbjct: 171 PEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFG-ADLPKFVREGRVRGLFAGR- 228
Query: 263 VWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSP-YKEFSALFRRNFTSEYPEED 321
V + + + LN + EG + + D + ++ F +R + +
Sbjct: 229 --QVVSMLTGEPEYLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKED----- 281
Query: 322 HFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF--KDGEL 379
P + +L ++++ + A + + E L+ + FS G + F D +
Sbjct: 282 ---PFVGSLVGYNTLTAMAVAFEKA--GGTESETLVETLKDMAFSTPMGPLSFRASDHQS 336
Query: 380 LNADTLRIVNVVGKKYKELDF 400
+ + K +D+
Sbjct: 337 TMGAWVGRTALRDGKGVMVDW 357
|
| >3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Length = 386 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 5e-22
Identities = 63/419 (15%), Positives = 136/419 (32%), Gaps = 62/419 (14%)
Query: 1 MNRFFFLVLIIASELVFVSPGVESASTNVNIEEVTKIGAIVD---ANSQMGKQAITAMKI 57
M + L++ +A+ L V+ + KIG + + +G+ +
Sbjct: 4 MQQTKTLIVALATMLAGVTAA----------QAEIKIGITMSASGPGAALGQPQSKTVAA 53
Query: 58 AVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIA 117
+ K++ D DP +AA A++L+++EKV V+ G + + +IA
Sbjct: 54 LPKEIG----GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIA 109
Query: 118 SRVQVPILSFAA--PAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYE 175
+ + P+++ AA V P M R ++ ++ ND + I K ++V I
Sbjct: 110 AEAKTPLMTMAAAAILVAP--MDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGF 167
Query: 176 DNVYGGDSGKLALLAEALQ----NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ 231
+ YG G +LA A +++ E + +V G++ K+
Sbjct: 168 SDAYG--EGYYKVLAAAAPKLGFELTTHE-----------VYARSDASVTGQVLKI--IA 212
Query: 232 SRVFIVLQASLDMTIHLFT-EANRMGL----VGKDSVWIVTNTVANALDSLNTTVISSME 286
++ V AS L G + + + +
Sbjct: 213 TKPDAVFIASAGTPAVLPQKALRERGFKGAIYQTHG-VATEEFIKLGGKDVEGAIFAGEA 271
Query: 287 GTLGIKSYYSDDSSPY-KEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345
+ F ++ + P+I + DS+ ++ AI
Sbjct: 272 FSGAEDMPADSPFRKVKARFVDAYK----AANGGAA---PTIFGVHLWDSMTLVENAIPA 324
Query: 346 LNYNISSPEMLLRQML------SSDFSGLSGKIRF--KDGELLNADTLRIVNVVGKKYK 396
R + S D + +G + + + ++ + ++
Sbjct: 325 ALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFR 383
|
| >3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Length = 391 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 5e-20
Identities = 56/392 (14%), Positives = 127/392 (32%), Gaps = 60/392 (15%)
Query: 36 KIGAIVD---ANSQMGKQAITAMKIAVQNFNS------DSRNHKLSLQIRDHNRDPFQAA 86
+G +VD S +GK ++A + FN D ++ RD+ +P A
Sbjct: 6 NVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAE 65
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS-FAAPAVTPLSMSRRWPYLI 145
+E ++ V I G T +T +++ ++ +S + + P+
Sbjct: 66 EYYREFRDRYGVIAIIGWGT-ADTEKLSDQVDTDKITYISASYSAKLL------VKPFNF 118
Query: 146 RMASNDSEQMKCIAD-LARKYNWRRVAAIYEDNV-YGGDSGKLALLAEALQNVSSSEIQS 203
A + S Q LA ++ ++A Y+ V Y + + +A
Sbjct: 119 YPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYS--RSPIGAIKKAAP--------- 167
Query: 204 RLVLPPISSISDPKEAV----RGELKKVQDKQSRV-FIVLQASLDMTIHLFTEANRMGL- 257
L L + P A +++ + ++ ++ L ++GL
Sbjct: 168 SLGLQVVGDYDLPLRATEADAERIAREM--LAADPDYVWCGNTISSCSLLGRAMAKVGLD 225
Query: 258 ---VGKDSVWIVTNTVANAL-DSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNF 313
+ W + + V + D + R N
Sbjct: 226 AFLLTNV--WGFDERSPQLIGEGGYGKVFGISPFIY---PMFGQDVEGIQTIFEAARMNG 280
Query: 314 TSEYPEEDHFHPSIHALRAHDSIKIITEAI---GRLNYNISSPEMLLRQMLSS--DFSGL 368
SE ++ ++ ++ ++ +AI + E L + ++ D G+
Sbjct: 281 VSEDQ------INLRVVQGFVNVWLLIKAIESVTSQDLQERGGEALKEALEANTFDLGGI 334
Query: 369 SG-KIRFKDGELLNADTLRIVNVV-GKKYKEL 398
+ I ++ G L + I+ + + + +
Sbjct: 335 TADTIDYEPGFHLAYRKVFIIKLGENGELQLM 366
|
| >3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Length = 392 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 6e-20
Identities = 52/397 (13%), Positives = 127/397 (31%), Gaps = 54/397 (13%)
Query: 32 EEVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAA 86
++ + S G A++ + N + +RD +
Sbjct: 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQ 64
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS--FAAPAVTPLSMSRRWPYL 144
+E +++ K+ V T + + +++P + + P Y+
Sbjct: 65 RFFEEAVDRFKIPVFLSYAT-GANLQLKPLIQELRIPTIPASMHIELIDP----PNNDYI 119
Query: 145 IRMASNDSEQMKCIAD-LARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ----NVSSS 199
++ SEQ+ + + +AR+ +VA + + +G + +A + +
Sbjct: 120 FLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFG--RAPVEDARKAARELGLQIVDV 177
Query: 200 EIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV-FIVLQASLDMTIHLFTEANRMGLV 258
+ + LK+ +Q+ V ++V Q ++ +A R+GL
Sbjct: 178 Q-----------EVGSGNLDNTALLKRF--EQAGVEYVVHQNVAGPVANILKDAKRLGL- 223
Query: 259 GKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYP 318
+ + L + EG L S+Y ++ +Y
Sbjct: 224 --KMRHLGAHYTGG--PDLIALAGDAAEGFLWATSFYMAHEDTP---GIRLQKEIGRKYG 276
Query: 319 EEDHFHPSIHALRAHDSIKIITEAIGR--LNYNISSPEMLLRQMLS-SDFSGLSGKIRFK 375
++F S++ + I EAI R + + E + + ++ + +
Sbjct: 277 RPENFIESVNYTNGMLAAAIAVEAIRRAQERFKRITNETVYQAIVGMNGPNAFKPGFAVS 336
Query: 376 DGELLN----------ADTLRIVNVVGKKYKELDFWL 402
+ + A+ LRI+ G ++ +
Sbjct: 337 TKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPF 373
|
| >3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Length = 375 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 49/347 (14%), Positives = 124/347 (35%), Gaps = 29/347 (8%)
Query: 32 EEVTKIGAIVDANSQM----GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAAT 87
+ KIG I D + G+ + A+K+AV +F + + DH AA+
Sbjct: 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGKPIEVVYADHQNKADIAAS 61
Query: 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRM 147
A+E +++ + ++ G + ++A+ + ++ A L+ + PY +
Sbjct: 62 KAREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGA-GADTLTNEQCTPYTVHY 120
Query: 148 ASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVL 207
A + K K + + D +G A+ ++ + V
Sbjct: 121 AYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKAL--EKNTADVVKANGGKVLGE--VR 176
Query: 208 PPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267
P+S+ SD L + Q ++++ + A T++ A G+ +
Sbjct: 177 HPLSA-SD----FSSFLLQAQSSKAQILGLANAG-GDTVNAIKAAKEFGITKT----MKL 226
Query: 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSI 327
+ ++ ++ + + +G + S+Y + ++++ + ++ + PS
Sbjct: 227 AALLMFINDVHALGLETTQGLVLTDSWYWNRDQASRQWAQ----RYFAKMKKM----PSS 278
Query: 328 HALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
+ S+ +A+ + + ++ Q+ K
Sbjct: 279 LQAADYSSVTTYLKAVQAA--GSTDSDKVMAQLKKMKIDDFYAKGYI 323
|
| >3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Length = 364 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-19
Identities = 40/352 (11%), Positives = 105/352 (29%), Gaps = 41/352 (11%)
Query: 36 KIGAIVD---ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQ 90
+ + + + G+ ++ N + + L RD + Q +
Sbjct: 7 SVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVR 66
Query: 91 ELINKEKVKVIAG-METWEETAVVA-EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMA 148
++ + + + T A++ + + ++P++ A A S P + +
Sbjct: 67 DMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGA----SSMTTDPLVFPIK 122
Query: 149 SNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLP 208
++ +++ + R+ +Y+++ G ++ + + L+ L
Sbjct: 123 ASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEA--ITGVERTLK---------AHALA 171
Query: 209 PISSIS-DPKEA-VRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGK---DSV 263
+ S A V + K+ + I L A+ + + G + S
Sbjct: 172 ITAMASYPRNTANVGPAVDKLLAADVQA-IFLGATAEPAAQFVRQYRARGGEAQLLGLSS 230
Query: 264 WIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPY-KEFSALFRRNFTSEYPEEDH 322
A ++ + +P +EF+ +
Sbjct: 231 IDPGILQKVAGLDAVRGYSLAL-----VMPNPGKSVNPVIREFNRARAAVGAKDVD---- 281
Query: 323 FHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
S A+ + K++ EAI R + E + + + G
Sbjct: 282 --LSFRAVEGFVAAKVLAEAIRRAGPKP-TREQVRHALTELRDYDVGGGFTV 330
|
| >4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Length = 371 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 4e-19
Identities = 61/364 (16%), Positives = 128/364 (35%), Gaps = 58/364 (15%)
Query: 32 EEVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDH-NRDPFQAAT 87
+ K+G I + GK + V + H + RD + +P Q+
Sbjct: 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAGHTVEFVYRDEVSPNPAQSKA 62
Query: 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPLSMSRRWPYLI 145
AQELI KEKV+ +AG+ VA + +VP++ A ++T S PY++
Sbjct: 63 LAQELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEKS-----PYIV 117
Query: 146 RMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA----------LLAEALQN 195
R + + A +A++ +VA D G D+ ++
Sbjct: 118 RTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMP 177
Query: 196 VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRM 255
+S+++ ++++++ + + + T+
Sbjct: 178 LSTTDFGP-------------------IMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDN 218
Query: 256 GLVGKDSVWIVTNTVANALDSLNTTVISSM----EGTLGIKSYYSDDSSPY-KEFSALFR 310
GL + + D + + ++ G L Y SP K F AL +
Sbjct: 219 GLKAGG------VKLMSTGDVVTEPDLPNIGEAGLGILSTYHYAVSHDSPENKAFLALLQ 272
Query: 311 RNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSG 370
+ + D ++ ++ A+D ++I + I + S P+ + + + G
Sbjct: 273 K----GGAKLD--EVTMTSVAAYDGARLIYKMIEATS-GKSDPDKAIAAVKGMKWVSPRG 325
Query: 371 KIRF 374
++
Sbjct: 326 EVSI 329
|
| >1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Length = 346 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 7e-19
Identities = 57/385 (14%), Positives = 128/385 (33%), Gaps = 66/385 (17%)
Query: 33 EVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAAT 87
+ K+ + +Q G + A+++ N+ + KL D DP QA
Sbjct: 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVA 60
Query: 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPLSMSRRWPYLI 145
A +++N + +K + G T ++I + ++S A P +T R + +++
Sbjct: 61 VANKIVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELT----QRGYQHIM 115
Query: 146 RMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYG---GDSGKLALLAEALQNVSSSEI 201
R A DS Q A +R+A I++ YG S + L A V I
Sbjct: 116 RTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGI 175
Query: 202 QSRLVLPPISSISDPKEA-VRGELKKVQDKQSRVFIV----LQASLDMTIHLFTEANRMG 256
E + +++ + + + +A +G
Sbjct: 176 T-------------AGEKDFSALIARLKKENIDFVYYGGYYPEMGQ-----MLRQARSVG 217
Query: 257 L----VGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSP-YKEFSALFRR 311
L +G + + A D+ +++ D P +
Sbjct: 218 LKTQFMGPEG-VGNASLSNIAGDAAEGMLVTM---------PKRYDQDPANQGIVD---- 263
Query: 312 NFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGK 371
++ + + + +++ + A+ R P L++ + ++ + + G
Sbjct: 264 ALKADKKDP----SGPYVWITYAAVQSLATALER--TGSDEPLALVKDLKANGANTVIGP 317
Query: 372 IRF-KDGELLNAD-TLRIVNVVGKK 394
+ + + G+L D + + G
Sbjct: 318 LNWDEKGDLKGFDFGVFQWHADGSS 342
|
| >3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 9e-19
Identities = 58/306 (18%), Positives = 108/306 (35%), Gaps = 36/306 (11%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRDHNRDPFQAATAAQELIN------ 94
+ G + AM A+ NSD N L +I D A + +
Sbjct: 39 KRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKD 98
Query: 95 ----------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMS 138
EKV + G + +VA I Q+P +S+A+ A LS
Sbjct: 99 TSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPE-LSDD 157
Query: 139 RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSS 198
RR+ + R+ DS Q + + D+ + W V+ + + Y G+ G + + +
Sbjct: 158 RRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSY-GEKGVESFTQISKEAGGL 216
Query: 199 SEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLV 258
S QS + P + R + + SR +V+ A+ + + A R V
Sbjct: 217 SIAQSVRI--PQERKDRTIDFDRIIKQLLDTPNSRA-VVIFANDEDIKQILAAAKRADQV 273
Query: 259 GKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYP 318
G +W+ +++ + ++ L+ EG + I+ + + + R
Sbjct: 274 GH-FLWVGSDSWGSKINPLHQH-EDIAEGAITIQPKRATVEG-FDAY--FTSRTL-ENNR 327
Query: 319 EEDHFH 324
F
Sbjct: 328 RNVWFA 333
|
| >3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Length = 356 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 4e-18
Identities = 60/388 (15%), Positives = 118/388 (30%), Gaps = 68/388 (17%)
Query: 36 KIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQ 90
I N+ G Q + A ++ N+ ++ + + D DP Q + A
Sbjct: 4 VIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVAN 63
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPLSMSRRWPYLIRMA 148
+ + + VK + G + +E+ + + ++ AA P T R R
Sbjct: 64 KFVA-DGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFT----ERGLWNTFRTC 118
Query: 149 SNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYG---GDSGKLALLAEALQNVSSSEIQSR 204
D +Q + +VA I++ YG D K A A + V +
Sbjct: 119 GRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVN-- 176
Query: 205 LVLPPISSISDPKEA-VRGELKKVQDKQSRVFIV----LQASLDMTIHLFTEANRMG--- 256
+ + K+++ + +A L + +A G
Sbjct: 177 -----------VGDKDFSALISKMKEAGVSIIYWGGLHTEAGL-----IIRQAADQGLKA 220
Query: 257 -LVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSP-YKEFSALFRRNFT 314
LV D + + A D++ T+ + P KE F+
Sbjct: 221 KLVSGDG-IVSNELASIAGDAVEGTLNTF---------GPDPTLRPENKELVEKFKAAGF 270
Query: 315 SEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
+ P + L ++ +++ I A PE + + F G+I F
Sbjct: 271 N---------PEAYTLYSYAAMQAIAGAAKA--AGSVEPEKVAEALKKGSFPTALGEISF 319
Query: 375 -KDGELLNADT--LRIVNVVGKKYKELD 399
+ G+ K+ +
Sbjct: 320 DEKGDPKLPGYVMYEWKKGPDGKFTYIQ 347
|
| >3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 53/310 (17%), Positives = 111/310 (35%), Gaps = 50/310 (16%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRDHNRDPFQAATAAQELIN------ 94
Q G Q + AM + N+D N L +IRD A + E I
Sbjct: 44 REQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISI 103
Query: 95 ----------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAV 132
K+ + + G + V + +P ++++A ++
Sbjct: 104 RDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSI 163
Query: 133 TPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192
LS + Y +R+ +D+ Q + + D+ ++YNW V+A++ + Y G+SG A A
Sbjct: 164 D-LSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNY-GESGMDAFKELA 221
Query: 193 LQN---VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLF 249
Q ++ S+ + + +R +++ ++RV +V L
Sbjct: 222 AQEGLSIAHSDK-----IYSNAGEKSFDRLLRKLRERL--PKARV-VVCFCEGMTVRGLL 273
Query: 250 TEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALF 309
+ R+G+VG+ ++ + D + G + I S + + ++
Sbjct: 274 SAMRRLGVVGE--FSLIGSDGWADRDEVIEGYEVEANGGITI-KLQSPEVRSFDDY--FL 328
Query: 310 RRNFTSEYPE 319
+
Sbjct: 329 KLRL-DTNTR 337
|
| >3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 12/155 (7%)
Query: 33 EVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAAT 87
+G + AN+ G+ A ++ + FN+ + + D D QA T
Sbjct: 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQART 62
Query: 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPLSMSRRWPYLI 145
A+ ++ +V + G + + I + +P LS A P P+
Sbjct: 63 IARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIK-----ISPWQF 117
Query: 146 RMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
R + + + A + VA I +G
Sbjct: 118 RAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWG 152
|
| >3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 13/120 (10%)
Query: 283 SSMEGTLGIKSYYSDDSSP-YKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITE 341
++EG ++ S P EF + + + Y P++ A +D++ I+
Sbjct: 240 PAVEGVRLATAFVLGASDPVVVEFVS----AYETLYGAI----PTLFAAHGYDAVGIMLA 291
Query: 342 AIGRLNYNISSPEML--LRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELD 399
A+GR ++ + L ++G++G RF L + V ++ +D
Sbjct: 292 AVGRAGPEVTRESLRDALAAT--DRYAGVTGITRFDPETRETTKILTRLVVREGDFRVID 349
|
| >3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Length = 374 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 8e-17
Identities = 50/388 (12%), Positives = 109/388 (28%), Gaps = 58/388 (14%)
Query: 33 EVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSRN---HKLSLQIRDHNRDPFQAA 86
+ KI I KQ T + + ++ + K+ + +D P +
Sbjct: 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSK 62
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPLSMSRRWPYL 144
A E + + G + +A + ++ A +T + Y+
Sbjct: 63 AALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWN---RYI 119
Query: 145 IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSS--EIQ 202
R N S+ A K +A + +D +G D +A + ++ + +
Sbjct: 120 FRTGRNSSQDAISNAVAIGK-QGVTIATLAQDYAFGRD-----GVAAFKEALAKTGATLA 173
Query: 203 SRLVLPP--------ISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANR 254
+ +P + D + + + ++++ D
Sbjct: 174 TEEYVPTTTTDFTAVGQRLFDALKD--------KPGKKIIWVIWAGGGDPL--------- 216
Query: 255 MGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSD--DSSPYKEFSALFRRN 312
L D + G G YY D + + ++
Sbjct: 217 TKLQDMDPKRYGIELSTGGNILPALAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKR 276
Query: 313 FTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKI 372
F + P + + A+ + + E L+ M +F GK+
Sbjct: 277 F--------NAPPDFFTAGGFSAAMAVVTAVQKA--KSTDTEKLIAAMEGMEFDTPKGKM 326
Query: 373 RF--KDGELLNADTLRIVNVVGKKYKEL 398
F +D + L + V V +
Sbjct: 327 VFRKEDHQALQSMYHFKVKVDPAVAWAV 354
|
| >3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Length = 379 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 43/316 (13%), Positives = 104/316 (32%), Gaps = 26/316 (8%)
Query: 32 EEVTKIGAIVDANSQM----GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAAT 87
+G + D +S GK ++ A+++A+++ + + L D+ A +
Sbjct: 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALS 63
Query: 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRM 147
A+E +++ V I + + + + A A + + Y I
Sbjct: 64 IAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFI-TAAAADQIGGTECNGYGIGF 122
Query: 148 ASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVL 207
N + +K + ++ + D YG L + S V
Sbjct: 123 LYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAI--RRELTAGGGQIVGS--VR 178
Query: 208 PPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267
P + D L + + +++ + I++ +A GL K
Sbjct: 179 FPFET-QD----FSSYLLQAKASGAQLIVSTSGG-AANINIMKQAREFGLPSKT---QKV 229
Query: 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSI 327
+ + L + + + M+G S+Y + + F+ F ++ + P+
Sbjct: 230 GGMIDILTDVKSAGLRVMQGQEYATSFYWNMDDRTRAFAK----RFYAKMGKM----PTN 281
Query: 328 HALRAHDSIKIITEAI 343
+ + + +A+
Sbjct: 282 NQAGGYSAALQYLKAV 297
|
| >1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Length = 385 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 51/349 (14%), Positives = 109/349 (31%), Gaps = 30/349 (8%)
Query: 32 EEVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAA 86
+E IG + + + + +AV+ N + + +D DP +
Sbjct: 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYR 64
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR 146
A++ I V+ + G V + R + S P ++
Sbjct: 65 LCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALL--CYPTPYEGFEYS---PNIVY 119
Query: 147 MASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLV 206
++ +A ++ RV I D +Y +S + L + +
Sbjct: 120 GGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNH---VMRHLYRQHGGTVLEEIY 176
Query: 207 LPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265
+P S D ++ ++++ + VF + T L+ R G+
Sbjct: 177 IPLYPSDDD----LQRAVERIYQARADVVFSTVVG--TGTAELYRAIARRYGDGRRPPIA 230
Query: 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHP 325
T + + + EG + + Y+S +P S F + +P ++
Sbjct: 231 SLTTSEAEVAKMES---DVAEGQVVVAPYFSSIDTP---ASRAFVQACHGFFP--ENATI 282
Query: 326 SIHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
+ A A+ ++ A E + R + D G +R
Sbjct: 283 TAWAEAAYWQTLLLGRAAQAA--GNWRVEDVQRHLYDIDIDAPQGPVRV 329
|
| >3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 3e-16
Identities = 65/347 (18%), Positives = 112/347 (32%), Gaps = 57/347 (16%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRDHNRDPFQAATAAQELIN------ 94
N G Q + AM A+ N D KL + I D A + E +
Sbjct: 36 NEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKV 95
Query: 95 ------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS 136
+ + G + VA + Q+P +S+A+ + LS
Sbjct: 96 DEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTS-AKLS 154
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQN- 195
R+ Y R D Q K +A++ R +NW V+ + + Y G++G A EA
Sbjct: 155 DKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDY-GETGIEAFEQEARLRN 213
Query: 196 --VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253
++++E + + K + +Q +RV +VL D + L A+
Sbjct: 214 ISIATAEK--------VGRSNIRKSYDSVIRELLQKPNARV-VVLFMRSDDSRELIAAAS 264
Query: 254 RMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNF 313
R W+ ++ + + G + + S + + N
Sbjct: 265 RA-NASF--TWVASDGWGAQESIIKGS-EHVAYGAITL-ELASQPVRQFDRY--FQSLNP 317
Query: 314 TSEYPE--------EDHFHPSIHALRAHDSIKIITEAIGRLNYNISS 352
E F S+ R H + AI NY S
Sbjct: 318 -YNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQES 363
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 2e-15
Identities = 76/561 (13%), Positives = 158/561 (28%), Gaps = 179/561 (31%)
Query: 65 DSRNHKLSLQIRD---HNRDPFQA-------ATAAQELINKEKVKVIAGMETWEE----- 109
D + Q +D D F + +++KE++ I +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 110 --------TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDS-EQMKCIAD 160
+V + V F +P+ +R P ++ + +++
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLM---SPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 161 LARKYNWRRV-------AAIYEDN------VYG-GDSGKLALLAEALQ------------ 194
+ KYN R+ A+ E + G SGK + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 195 ---NVSSS-------EIQSRL---VLPPISSISDPKEAVRGELKKVQDKQSRVFI--VLQ 239
N+ + E+ +L + P +S SD ++ + +Q + R+ +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 240 ASLDMTIHLFTEANRMGLVGKDSVW--------------IVT---NTVANALDSLNTTVI 282
L LV +V ++T V + L + TT I
Sbjct: 245 NCL--------------LV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 283 SSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEA 342
S ++ D+ K + + P E + + + II E+
Sbjct: 290 SLDHHSMT---LTPDEV---KSLLLKYLDCRPQDLPREVL---TTNPR----RLSIIAES 336
Query: 343 I----GRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKEL 398
I + + + + I +L R K + L
Sbjct: 337 IRDGLATWDN--------WKHVNCDKLT----TIIESSLNVLEPAEYR------KMFDRL 378
Query: 399 DFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIG 458
F + I + + + +IW + + + M +
Sbjct: 379 ------SVFPP-----SA-HIPTILLS------LIW-----------FDVIK-SDVMVV- 407
Query: 459 VPTRTFFEKFVVIKDDP-----LNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH 513
+ +V K + + ++ + L R +VDH Y++P F
Sbjct: 408 --VNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDH--YNIPKTFDSD 462
Query: 514 DGVYDDLINGVYDKVNYFNYH 534
D + L Y ++ +H
Sbjct: 463 DLIPPYLDQYFY---SHIGHH 480
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 9e-08
Identities = 65/316 (20%), Positives = 108/316 (34%), Gaps = 83/316 (26%)
Query: 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEI--QSRLVLP-PISS 212
K + D ++ + D +LL + L + ++ + P +S
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYL-DCRPQDLPREVLTTNPRRLSI 332
Query: 213 ISDPKEAVRGEL------KKVQ-DKQSRVFIVLQASLDMTIHLFTEANR---MGL-VGKD 261
I+ E++R L K V DK + + +++SL+ L R L V
Sbjct: 333 IA---ESIRDGLATWDNWKHVNCDKLTTI---IESSLN---VLEPAEYRKMFDRLSVFPP 383
Query: 262 SVWIVTNTVA---------NALDSLNTTVISSM------EGTLGIKSYYSDDSSPYKEFS 306
S I T ++ + + +N S+ E T+ I S Y + +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 307 ALFRR-----NFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYNISSPEM-----L 356
AL R N + +D P + D + IG +++ + E L
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYL------D--QYFYSHIG---HHLKNIEHPERMTL 492
Query: 357 LRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG--KKYKE----------------L 398
R + DF L KIR D NA + I+N + K YK L
Sbjct: 493 FRMVFL-DFRFLEQKIR-HDSTAWNA-SGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 399 DFWLPNFGFSKTSSKH 414
DF LP + SK+
Sbjct: 550 DF-LPKIEENLICSKY 564
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 3e-07
Identities = 65/443 (14%), Positives = 126/443 (28%), Gaps = 153/443 (34%)
Query: 164 KYNWRRVAAIYEDN-VYGGDSGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVR 221
+Y ++ + +++ED V D + + +++ S EI ++ D
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHIIMSK------DAVSGTL 65
Query: 222 GELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTV 281
R+F L + + + F E ++ + ++++
Sbjct: 66 -----------RLFWTLLSKQEEMVQKFVE----EVLRINYKFLMSP------------- 97
Query: 282 ISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITE 341
IK+ S + + +R+ R ++ ++ +
Sbjct: 98 ---------IKTEQRQPSMMTRMYIE--QRD------------------RLYNDNQVFAK 128
Query: 342 AIGRLNYNISSPEML--LRQMLSSDFS-------GL--SGKIRFKDGELLNADTLRIVNV 390
YN+S + LRQ L G+ SGK + D V
Sbjct: 129 ------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK------TWVALDVCLSYKV 176
Query: 391 VGKKYKELDFWLPNFGFSKT----------------SSKHNVGDISSNI------AAEGF 428
K ++ FWL N + + + D SSNI
Sbjct: 177 QCKMDFKI-FWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 429 TGPVIWPGN----LI--N-RNPKGWAMPSNQEPM----RIGVPTR----TFFEKFVVIKD 473
+ L+ N +N K W +I + TR T F
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAW------NAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 474 DPLNGNSNDKNLRYDGF----SIELFRLVVDHLNYDLPYEFVPHDGVYDDLING--VYDK 527
L+ +S L +D DLP E + + +I + D
Sbjct: 289 ISLDHHS-------MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDG 340
Query: 528 VNYFNYHDKLLFKKKKRLCLVIE 550
+ ++ + K +IE
Sbjct: 341 LATWDNWKHVNCDKLTT---IIE 360
|
| >2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Length = 555 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 68/347 (19%), Positives = 114/347 (32%), Gaps = 57/347 (16%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRDHNRDPFQAATAAQELINKEKVKV 100
N G Q + AM A+ N D+ KL + I D A + E + KV
Sbjct: 37 NEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKV 96
Query: 101 IA------------------------GMETWEETAVVAEIASRVQVPILSFAAPAVTPLS 136
G + VA + Q+P +S+A+ + LS
Sbjct: 97 DEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTS-AKLS 155
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQN- 195
R+ Y R D Q K +A++ R +NW V+ + + Y G++G A EA
Sbjct: 156 DKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDY-GETGIEAFEQEARLRN 214
Query: 196 --VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253
++++E + + K + +Q +RV +VL D + L AN
Sbjct: 215 ICIATAEK--------VGRSNIRKSYDSVIRELLQKPNARV-VVLFMRSDDSRELIAAAN 265
Query: 254 RMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNF 313
R+ W+ ++ + + G + + S + + N
Sbjct: 266 RV-NASF--TWVASDGWGAQESIVKGS-EHVAYGAITL-ELASHPVRQFDRY--FQSLNP 318
Query: 314 TSEYPE--------EDHFHPSIHALRAHDSIKIITEAIGRLNYNISS 352
E F S+ R H + AI NY S
Sbjct: 319 -YNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQES 364
|
| >3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Length = 366 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 13/167 (7%)
Query: 21 GVESASTNVNIEEVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD 77
+ + ++ +V KI I+ S G+ ++IA + + ++ L + D
Sbjct: 3 SDKIHHHHHHMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPTVL-GEEVELVLLD 61
Query: 78 HNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA--PAVTPL 135
+ +AA AA I+KEKV I G + +A IA +VP+++ A+ P VT
Sbjct: 62 TRSEKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVT-- 119
Query: 136 SMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYE-DNVYG 180
+ ++ R+ D Q +A A + +RV + + Y
Sbjct: 120 ---QGRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYS 163
|
| >3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Length = 419 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 20/174 (11%), Positives = 47/174 (27%), Gaps = 17/174 (9%)
Query: 24 SASTNVNIEEVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDH 78
+++ + IG + G + +++A N+ + L D
Sbjct: 4 NSAAQAQSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADT 63
Query: 79 NRDPFQAAT-AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSM 137
+AQ LI+++ + E + ++A+ V + AV +
Sbjct: 64 QSKGVDVVIQSAQRLIDRDNASALIAGYNLENGTALHDVAADAGVIAMHANTVAVHDEMV 123
Query: 138 SRRWPYLIRMASNDSEQMKCIADLAR-----------KYNWRRVAAIYEDNVYG 180
D + + ++A I +Y
Sbjct: 124 KSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYS 177
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 550 | |||
| 3kg2_A | 823 | Glutamate receptor 2; ION channel, membrane protei | 100.0 | |
| 3o21_A | 389 | Glutamate receptor 3; periplasmatic binding protei | 100.0 | |
| 4f11_A | 433 | Gamma-aminobutyric acid type B receptor subunit 2; | 100.0 | |
| 3hsy_A | 376 | Glutamate receptor 2; ligand-gated ION channel, sy | 100.0 | |
| 4gpa_A | 389 | Glutamate receptor 4; PBP fold, ligand-gated ION c | 100.0 | |
| 3om0_A | 393 | Glutamate receptor, ionotropic kainate 5; membrane | 100.0 | |
| 3saj_A | 384 | Glutamate receptor 1; rossman fold, ION channel, m | 100.0 | |
| 3h6g_A | 395 | Glutamate receptor, ionotropic kainate 2; membrane | 100.0 | |
| 1jdp_A | 441 | NPR-C, atrial natriuretic peptide clearance recept | 100.0 | |
| 2e4u_A | 555 | Metabotropic glutamate receptor 3; G-protein-coupl | 100.0 | |
| 3sm9_A | 479 | Mglur3, metabotropic glutamate receptor 3; structu | 100.0 | |
| 1dp4_A | 435 | Atrial natriuretic peptide receptor A; periplasmic | 100.0 | |
| 3qek_A | 384 | NMDA glutamate receptor subunit; amino terminal do | 100.0 | |
| 3ks9_A | 496 | Mglur1, metabotropic glutamate receptor 1; glutama | 100.0 | |
| 3mq4_A | 481 | Mglur7, metabotropic glutamate receptor 7; glutama | 100.0 | |
| 3qel_B | 364 | Glutamate [NMDA] receptor subunit epsilon-2; ION c | 100.0 | |
| 3i45_A | 387 | Twin-arginine translocation pathway signal protei; | 100.0 | |
| 3h5l_A | 419 | Putative branched-chain amino acid ABC transporter | 100.0 | |
| 3td9_A | 366 | Branched chain amino acid ABC transporter, peripl | 100.0 | |
| 4f06_A | 371 | Extracellular ligand-binding receptor; PSI-biology | 100.0 | |
| 3ipc_A | 356 | ABC transporter, substrate binding protein (amino; | 100.0 | |
| 3i09_A | 375 | Periplasmic branched-chain amino acid-binding Pro; | 100.0 | |
| 4gnr_A | 353 | ABC transporter substrate-binding protein-branche | 100.0 | |
| 3n0w_A | 379 | ABC branched chain amino acid family transporter, | 100.0 | |
| 3hut_A | 358 | Putative branched-chain amino acid ABC transporter | 100.0 | |
| 3lkb_A | 392 | Probable branched-chain amino acid ABC transporter | 100.0 | |
| 1usg_A | 346 | Leucine-specific binding protein; leucine-binding | 100.0 | |
| 4evq_A | 375 | Putative ABC transporter subunit, substrate-bindi | 100.0 | |
| 4eyg_A | 368 | Twin-arginine translocation pathway signal; PSI-bi | 100.0 | |
| 3n0x_A | 374 | Possible substrate binding protein of ABC transpo | 100.0 | |
| 3eaf_A | 391 | ABC transporter, substrate binding protein; PSI2, | 100.0 | |
| 3lop_A | 364 | Substrate binding periplasmic protein; protein str | 100.0 | |
| 3sg0_A | 386 | Extracellular ligand-binding receptor; structural | 100.0 | |
| 1pea_A | 385 | Amidase operon; gene regulator, receptor, binding | 100.0 | |
| 3snr_A | 362 | Extracellular ligand-binding receptor; structural | 100.0 | |
| 3ckm_A | 327 | YRAM (HI1655), LPOA; periplasmic-binding protein, | 99.96 | |
| 2h4a_A | 325 | YRAM (HI1655); perplasmic binding protein, lipopro | 99.96 | |
| 1pb7_A | 292 | N-methyl-D-aspartate receptor subunit 1; ligand bi | 99.37 | |
| 2rc8_A | 294 | Glutamate [NMDA] receptor subunit 3A; membrane pro | 99.23 | |
| 2a5s_A | 284 | N-methyl-D-aspartate receptor nmdar2A subunit, NMD | 99.2 | |
| 3g3k_A | 259 | Glutamate receptor, ionotropic kainate 2; membrane | 99.01 | |
| 1yae_A | 312 | Glutamate receptor, ionotropic kainate 2; kainate | 98.95 | |
| 2v3u_A | 265 | Glutamate receptor delta-2 subunit; postsynaptic m | 98.89 | |
| 1mqi_A | 263 | Glutamate receptor 2; GLUR2, ligand binding core, | 98.79 | |
| 4gvo_A | 243 | LMO2349 protein; structural genomics, IDP05245, L- | 98.78 | |
| 3i6v_A | 232 | Periplasmic His/Glu/Gln/Arg/opine family-binding; | 98.64 | |
| 4h5g_A | 243 | Amino acid ABC superfamily ATP binding cassette tr | 98.6 | |
| 3ksm_A | 276 | ABC-type sugar transport system, periplasmic COMP; | 98.48 | |
| 3kbr_A | 239 | Cyclohexadienyl dehydratase; pseudomonas aeruginos | 98.44 | |
| 3k4u_A | 245 | Binding component of ABC transporter; structural g | 98.43 | |
| 3kzg_A | 237 | Arginine 3RD transport system periplasmic binding | 98.41 | |
| 3tql_A | 227 | Arginine-binding protein; transport and binding pr | 98.39 | |
| 3del_B | 242 | Arginine binding protein; alpha and beta protein ( | 98.38 | |
| 1lst_A | 239 | Lysine, arginine, ornithine-binding protein; amino | 98.37 | |
| 3hv1_A | 268 | Polar amino acid ABC uptake transporter substrate | 98.36 | |
| 3brq_A | 296 | HTH-type transcriptional regulator ASCG; transcrip | 98.35 | |
| 4dz1_A | 259 | DALS D-alanine transporter; D-alanine binding, per | 98.34 | |
| 4f3p_A | 249 | Glutamine-binding periplasmic protein; ssgcid, str | 98.34 | |
| 3h75_A | 350 | Periplasmic sugar-binding domain protein; protein | 98.33 | |
| 2h3h_A | 313 | Sugar ABC transporter, periplasmic sugar-binding p | 98.33 | |
| 1ii5_A | 233 | SLR1257 protein; membrane protein; HET: GLU; 1.60A | 98.33 | |
| 1dbq_A | 289 | Purine repressor; transcription regulation, DNA-bi | 98.33 | |
| 3l49_A | 291 | ABC sugar (ribose) transporter, periplasmic substr | 98.33 | |
| 2rjo_A | 332 | Twin-arginine translocation pathway signal protei; | 98.31 | |
| 2qh8_A | 302 | Uncharacterized protein; conserved domain protein, | 98.3 | |
| 4eq9_A | 246 | ABC transporter substrate-binding protein-amino A | 98.29 | |
| 2iee_A | 271 | ORF2, probable ABC transporter extracellular-bindi | 98.28 | |
| 2fvy_A | 309 | D-galactose-binding periplasmic protein; periplasm | 98.26 | |
| 3brs_A | 289 | Periplasmic binding protein/LACI transcriptional; | 98.24 | |
| 3o1i_D | 304 | Periplasmic protein TORT; ligand free, two compone | 98.22 | |
| 2y7i_A | 229 | STM4351; arginine-binding protein; HET: ARG; 1.90A | 98.22 | |
| 3rot_A | 297 | ABC sugar transporter, periplasmic sugar binding; | 98.2 | |
| 2x7x_A | 325 | Sensor protein; transferase, sensor histidine kina | 98.19 | |
| 3d02_A | 303 | Putative LACI-type transcriptional regulator; peri | 98.19 | |
| 3g1w_A | 305 | Sugar ABC transporter; sugar-binding protein, baci | 98.19 | |
| 3o74_A | 272 | Fructose transport system repressor FRUR; dual tra | 98.18 | |
| 2qu7_A | 288 | Putative transcriptional regulator; structural gen | 98.18 | |
| 3lft_A | 295 | Uncharacterized protein; ABC, ATPase, cassette, L- | 98.18 | |
| 3mpk_A | 267 | Virulence sensor protein BVGS; venus flytrap, sens | 98.16 | |
| 2vk2_A | 306 | YTFQ, ABC transporter periplasmic-binding protein | 98.16 | |
| 1wdn_A | 226 | GLNBP, glutamine binding protein; closed form, com | 98.15 | |
| 2fn9_A | 290 | Ribose ABC transporter, periplasmic ribose-bindin; | 98.14 | |
| 2fep_A | 289 | Catabolite control protein A; CCPA, transcriptiona | 98.14 | |
| 2q88_A | 257 | EHUB, putative ABC transporter amino acid-binding | 98.14 | |
| 3lkv_A | 302 | Uncharacterized conserved domain protein; ATPase b | 98.13 | |
| 1tjy_A | 316 | Sugar transport protein; protein-ligand complex, s | 98.11 | |
| 3c3k_A | 285 | Alanine racemase; structural genomics, protein str | 98.11 | |
| 3dbi_A | 338 | Sugar-binding transcriptional regulator, LACI FAM; | 98.11 | |
| 3h7m_A | 234 | Sensor protein; histidine kinase sensor domain, ki | 98.1 | |
| 1jx6_A | 342 | LUXP protein; protein-ligand complex, signaling pr | 98.1 | |
| 2pyy_A | 228 | Ionotropic glutamate receptor bacterial homologue; | 98.09 | |
| 3l6u_A | 293 | ABC-type sugar transport system periplasmic compo; | 98.09 | |
| 2o20_A | 332 | Catabolite control protein A; CCPA, transcriptiona | 98.08 | |
| 2iks_A | 293 | DNA-binding transcriptional dual regulator; escher | 98.08 | |
| 2ioy_A | 283 | Periplasmic sugar-binding protein; ribose binding | 98.07 | |
| 3gbv_A | 304 | Putative LACI-family transcriptional regulator; NY | 98.06 | |
| 3bbl_A | 287 | Regulatory protein of LACI family; protein structu | 98.05 | |
| 3egc_A | 291 | Putative ribose operon repressor; structural genom | 98.05 | |
| 3k4h_A | 292 | Putative transcriptional regulator; structural gen | 98.04 | |
| 3d8u_A | 275 | PURR transcriptional regulator; APC91343.1, vibrio | 98.04 | |
| 3m9w_A | 313 | D-xylose-binding periplasmic protein; xylose bindi | 98.03 | |
| 3clk_A | 290 | Transcription regulator; 11017J, PSI-II, NYSGXRC, | 98.02 | |
| 2pvu_A | 272 | ARTJ; basic amino acid binding protein, ABC transp | 98.01 | |
| 3k9c_A | 289 | Transcriptional regulator, LACI family protein; PS | 97.97 | |
| 2hsg_A | 332 | Glucose-resistance amylase regulator; CCPA, transc | 97.95 | |
| 2rgy_A | 290 | Transcriptional regulator, LACI family; 11011J, NY | 97.95 | |
| 1qpz_A | 340 | PURA, protein (purine nucleotide synthesis repress | 97.95 | |
| 2h0a_A | 276 | TTHA0807, transcriptional regulator; repressor, st | 97.94 | |
| 3qk7_A | 294 | Transcriptional regulators; structural genomics, N | 97.92 | |
| 3gv0_A | 288 | Transcriptional regulator, LACI family; transcript | 97.91 | |
| 3kke_A | 303 | LACI family transcriptional regulator; structural | 97.9 | |
| 8abp_A | 306 | L-arabinose-binding protein; binding proteins; HET | 97.88 | |
| 3qax_A | 268 | Probable ABC transporter arginine-binding protein; | 97.87 | |
| 3gyb_A | 280 | Transcriptional regulators (LACI-family transcript | 97.87 | |
| 3jy6_A | 276 | Transcriptional regulator, LACI family; NYSGXRC, P | 97.86 | |
| 2yln_A | 283 | Putative ABC transporter, periplasmic binding Pro | 97.85 | |
| 2vha_A | 287 | Periplasmic binding transport protein; periplasmic | 97.85 | |
| 3ctp_A | 330 | Periplasmic binding protein/LACI transcriptional; | 97.84 | |
| 3tb6_A | 298 | Arabinose metabolism transcriptional repressor; tr | 97.83 | |
| 3e61_A | 277 | Putative transcriptional repressor of ribose OPER; | 97.82 | |
| 1xt8_A | 292 | Putative amino-acid transporter periplasmic solut | 97.81 | |
| 3g85_A | 289 | Transcriptional regulator (LACI family); transcrip | 97.8 | |
| 3hcw_A | 295 | Maltose operon transcriptional repressor; RNA-bind | 97.8 | |
| 2yjp_A | 291 | Putative ABC transporter, periplasmic binding Pro | 97.79 | |
| 4i62_A | 269 | Amino acid ABC transporter, periplasmic amino ACI | 97.77 | |
| 3kjx_A | 344 | Transcriptional regulator, LACI family; LACL famil | 97.74 | |
| 3bil_A | 348 | Probable LACI-family transcriptional regulator; st | 97.71 | |
| 3cs3_A | 277 | Sugar-binding transcriptional regulator, LACI FAM; | 97.71 | |
| 2dri_A | 271 | D-ribose-binding protein; sugar transport; HET: RI | 97.71 | |
| 3e3m_A | 355 | Transcriptional regulator, LACI family; structural | 97.68 | |
| 2v25_A | 259 | Major cell-binding factor; antigen, adhesin, aspar | 97.63 | |
| 1byk_A | 255 | Protein (trehalose operon repressor); LACI family, | 97.6 | |
| 1gud_A | 288 | ALBP, D-allose-binding periplasmic protein; peripl | 97.6 | |
| 3s99_A | 356 | Basic membrane lipoprotein; ssgcid, structural gen | 97.58 | |
| 3huu_A | 305 | Transcription regulator like protein; PSI-II, NYSG | 97.58 | |
| 3h5o_A | 339 | Transcriptional regulator GNTR; transcription regu | 97.57 | |
| 3jvd_A | 333 | Transcriptional regulators; structural genomics, P | 97.55 | |
| 3uug_A | 330 | Multiple sugar-binding periplasmic receptor CHVE; | 97.52 | |
| 4fe7_A | 412 | Xylose operon regulatory protein; HTH_ARAC, helix- | 97.52 | |
| 3hs3_A | 277 | Ribose operon repressor; PSI-II, NYSGXRC, periplas | 97.51 | |
| 2fqx_A | 318 | Membrane lipoprotein TMPC; ABC transport system, l | 97.43 | |
| 1jye_A | 349 | Lactose operon repressor; gene regulation, protein | 97.31 | |
| 3miz_A | 301 | Putative transcriptional regulator protein, LACI f | 97.29 | |
| 2hqb_A | 296 | Transcriptional activator of COMK gene; berkeley s | 97.26 | |
| 3qi7_A | 371 | Putative transcriptional regulator; periplasmic bi | 97.23 | |
| 3h5t_A | 366 | Transcriptional regulator, LACI family; DNA-depend | 96.68 | |
| 2ozz_A | 231 | Hypothetical protein YHFZ; alpha-beta structure, s | 95.88 | |
| 3ixl_A | 240 | Amdase, arylmalonate decarboxylase; enantioselecti | 95.34 | |
| 3s99_A | 356 | Basic membrane lipoprotein; ssgcid, structural gen | 92.16 | |
| 2xed_A | 273 | Putative maleate isomerase; nicotinic acid catabol | 91.35 | |
| 2fqx_A | 318 | Membrane lipoprotein TMPC; ABC transport system, l | 91.19 | |
| 2l82_A | 162 | Designed protein OR32; structural genomics, northe | 89.47 | |
| 2hqb_A | 296 | Transcriptional activator of COMK gene; berkeley s | 87.52 | |
| 3p7i_A | 321 | PHND, subunit of alkylphosphonate ABC transporter; | 87.44 | |
| 2q5c_A | 196 | NTRC family transcriptional regulator; structural | 87.28 | |
| 2eq5_A | 228 | 228AA long hypothetical hydantoin racemase; struct | 86.63 | |
| 2pju_A | 225 | Propionate catabolism operon regulatory protein; s | 83.32 | |
| 3n5l_A | 310 | Binding protein component of ABC phosphonate TRAN; | 83.3 | |
| 3bfj_A | 387 | 1,3-propanediol oxidoreductase; opportunistic path | 82.78 | |
| 3ox4_A | 383 | Alcohol dehydrogenase 2; iron, NAD, oxidoreductase | 82.5 | |
| 4gd5_A | 279 | Phosphate ABC transporter, phosphate-binding PROT; | 81.15 |
| >3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-59 Score=510.78 Aligned_cols=448 Identities=16% Similarity=0.241 Sum_probs=373.2
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+|+||+++|.++ .....|+++|+++||+++ ++|+++++|+++ ++..+.+.+|++++ ++|.|||||.+|..+.+
T Consensus 2 ~ikIG~l~~~tg---~~~~~a~~lAveeiN~~~--~~l~~~~~D~~~~~~~~a~~~~~~l~~-~~V~aiiG~~~S~~~~a 75 (823)
T 3kg2_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTSE--FRLTPHIDNLEVANSFAVTNAFCSQFS-RGVYAIFGFYDKKSVNT 75 (823)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCSS--CEEEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCTTTHHH
T ss_pred cceEEEEeCCCC---hHHHHHHHHHHHHHhcCC--eEEEEEEEEcCCCChHHHHHHHHHHHh-cCcEEEEcCCChhHHHH
Confidence 699999999995 488899999999999985 999999999998 99999999999997 59999999999999999
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
++++++.+++|+|++.. +.. ..++|+||+.|+ ++.++++++++|||++|++|| ++++| ....+.+.+.
T Consensus 76 ~~~i~~~~~iP~is~~~----~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g--~~~~~~~~~~ 143 (823)
T 3kg2_A 76 ITSFCGTLHVSFITPSF----PTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLDS 143 (823)
T ss_dssp HHHHHHHTTCEEEECSC----CCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGC--THHHHHHHHH
T ss_pred HHHHhhcCCCceeeccc----CCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChh--HHHHHHHHHH
Confidence 99999999999999843 322 356899999998 899999999999999999999 67789 9999999999
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchh
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 272 (550)
+++.| ++|+....++... ...+.|+..++++|+++++|+|++ ++..+.+..++++++++||.+++|+||.++.+..
T Consensus 144 ~~~~g-~~v~~~~~~~~~~--~~~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 219 (823)
T 3kg2_A 144 AAEKK-WQVTAINVGNINN--DKKDETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (823)
T ss_dssp HHHTT-CEEEEEECSSCCS--SSTTTTTTTHHHHTTTTTCCEEEE-ECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSS
T ss_pred hhccC-CceEEEEeecCCC--CccchhHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHHHHcCcCCCCeEEEEeccccc
Confidence 99999 9999887666531 012468999999999999999999 9999999999999999999999999999885443
Q ss_pred hcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccC---
Q 008863 273 ALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN--- 349 (550)
Q Consensus 273 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~--- 349 (550)
..+.. .......|++++..+.+. .|.+++|.++|++.|...++......++.+++++||||+++++|++++..+
T Consensus 220 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~ 296 (823)
T 3kg2_A 220 DGDLL--KIQFGGAEVSGFQIVDYD-DSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIE 296 (823)
T ss_dssp SSCCS--SSSSSBCEEEEEESSCTT-SHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccchH--HhhcCCCCceEeeeecCC-chHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 32221 111233457777765444 489999999998887766554434457788999999999999999987531
Q ss_pred -----------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCccccC
Q 008863 350 -----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSS 412 (550)
Q Consensus 350 -----------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~~~~ 412 (550)
|.+|.+|+++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++..++.....
T Consensus 297 ~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~~ 376 (823)
T 3kg2_A 297 ISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED 376 (823)
T ss_dssp CCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECCC
T ss_pred cccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCceeccC
Confidence 357899999999999999999999999999988999999999999999999999877653321
Q ss_pred CCCcCCcCCCccccCCCCccccCCCCCCCCCCccccCCCCCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchH
Q 008863 413 KHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSI 492 (550)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~i~wp~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~Gfci 492 (550)
. . ...++++++|.+.. ++||++.+++.+. . +++.+++|||+
T Consensus 377 -----------------~----------~------~~~~~~~l~v~~~~---~~P~~~~~~~~~~-~--~~~~~~~G~~~ 417 (823)
T 3kg2_A 377 -----------------D----------T------SGLEQKTVVVTTIL---ESPYVMMKANHAA-L--AGNERYEGYCV 417 (823)
T ss_dssp -----------------C----------C------SSCCCCCEEEEECC---CTTTSEECTTGGG-C--CGGGGEESHHH
T ss_pred -----------------c----------c------cccCCCEEEEEEec---CCCcEEEecCccc-c--CCCCceEEEHH
Confidence 0 0 11345677887654 4889998754321 1 14679999999
Q ss_pred HHHHHHHHhCCCCCCeEEEec-----------CCChHHHHHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 493 ELFRLVVDHLNYDLPYEFVPH-----------DGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 493 Dll~~la~~l~f~~~~~~~~~-----------~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
||++++++.+||+ |+++++ +|+|+||+++|.+|++|+++++++||.+|++++.
T Consensus 418 dl~~~~a~~l~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~d 481 (823)
T 3kg2_A 418 DLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVID 481 (823)
T ss_dssp HHHHHHHHHHTCC--EEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEE
T ss_pred HHHHHHHHHcCCc--EEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEE
Confidence 9999999999999 555543 4779999999999999999999999999998875
|
| >3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=395.06 Aligned_cols=353 Identities=16% Similarity=0.246 Sum_probs=301.3
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC----CCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~----~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
+++|+||+++|+++ .....|+++|+++||+++ +|++|+++++|+++ |+..+.+.+|+|+++ +|.+||||.+
T Consensus 3 ~~~i~IG~i~~~sg---~~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~-~V~aiiG~~~ 78 (389)
T 3o21_A 3 PNTISIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSR-GVYAIFGFYD 78 (389)
T ss_dssp CSEEEEEEEECTTC---HHHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTT-TCSCEEECCC
T ss_pred CceeEEEEEeCCCC---HHHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEeCCC
Confidence 36899999999995 388999999999999986 48999999999987 999999999999985 9999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
|..+.+++++++.++||+|++++. ..+ ..+|.|++.|+ ++.++++++++++|++|++|| |++|| ....
T Consensus 79 S~~~~a~~~i~~~~~iP~Is~s~~----~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~ 146 (389)
T 3o21_A 79 QMSMNTLTSFCGALHTSFVTPSFP----TDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERG--FSVL 146 (389)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSCC----CSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTC--SHHH
T ss_pred hhHHHHHHHHhccCCCceeecCCC----Ccc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHH--HHHH
Confidence 999999999999999999987543 233 34667788887 899999999999999999999 77999 9999
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+.+.+++.| +||+....++.. ...|+..+|++|+++++|+||+ .++...+..++++++++||.++.|+||+
T Consensus 147 ~~~~~~~~~~g-~~v~~~~~~~~~-----~~~d~~~~l~~ik~~~~~vii~-~~~~~~~~~i~~qa~~~g~~~~~~~~i~ 219 (389)
T 3o21_A 147 QAIMEAAVQNN-WQVTARSVGNIK-----DVQEFRRIIEEMDRRQEKRYLI-DCEVERINTILEQVVILGKHSRGYHYML 219 (389)
T ss_dssp HHHHHHHHHTT-CEEEEEECTTCC-----CTHHHHHHHHHHHTTTCCEEEE-ESCHHHHHHHHHHHHHHCSCSTTCEEEE
T ss_pred HHHHHHhhcCC-CeEEEEEecCCC-----CcHHHHHHHHHHHhCCCeEEEE-ECCHHHHHHHHHHHHHcCcccCCeEEEE
Confidence 99999999999 999987765431 3368999999999999999999 9999999999999999999999999999
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
++.|....++ ........+++++..+.+. +|.+++|.++|+++|...++......+..+++++|||++++++|++++
T Consensus 220 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 296 (389)
T 3o21_A 220 ANLGFTDILL--ERVMHGGANITGFQIVNNE-NPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYL 296 (389)
T ss_dssp CCTTGGGCCC--HHHHHTTCEEEEEESCCTT-CHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccccH--HHHhcCCcceEEEEEecCC-ChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 8876554432 1233445677777765444 589999999998877554432222346788999999999999999987
Q ss_pred cc-------------C-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCC
Q 008863 347 NY-------------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (550)
Q Consensus 347 ~~-------------~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g 406 (550)
.. | |.+|..|+++|++++|+|++|+++||++|++.+..|+|+++.++++++||+|++..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 376 (389)
T 3o21_A 297 RRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYER 376 (389)
T ss_dssp HHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred HhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCC
Confidence 62 1 456889999999999999999999999999988999999999999999999999998
Q ss_pred Cccc
Q 008863 407 FSKT 410 (550)
Q Consensus 407 ~~~~ 410 (550)
+...
T Consensus 377 ~~~~ 380 (389)
T 3o21_A 377 FVPF 380 (389)
T ss_dssp EECC
T ss_pred cccc
Confidence 7644
|
| >4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=396.88 Aligned_cols=350 Identities=19% Similarity=0.283 Sum_probs=303.0
Q ss_pred CCCcEEEEEEEecCC-----ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEE
Q 008863 31 IEEVTKIGAIVDANS-----QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIA 102 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~-----~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aii 102 (550)
..++|+||+++|+++ ..|.....|+++|+++||+++ +|++|+++++|+++++..+++.+++|+.+ ++|.+||
T Consensus 11 ~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~avi 90 (433)
T 4f11_A 11 SSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVF 90 (433)
T ss_dssp CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHTTTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEE
T ss_pred CCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 347899999999995 457889999999999999986 68999999999999999999999999986 4999999
Q ss_pred cCCChHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCC
Q 008863 103 GMETWEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG 181 (550)
Q Consensus 103 G~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~ 181 (550)
||.+|..+.++++++..+++|+|+++++ ++.++ +..+||+||+.|++..++.++++++++++|++|++|+++++||
T Consensus 91 G~~~S~~~~a~~~~~~~~~ip~is~~~~--~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g- 167 (433)
T 4f11_A 91 GGVCPSVTSIIAESLQGWNLVQLSFAAT--TPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF- 167 (433)
T ss_dssp ECCSHHHHHHHHHTHHHHTCEEEESSCC--CGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH-
T ss_pred CCCcchHHHHHHHHHHhcCceEEEcccC--CccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhh-
Confidence 9999999999999999999999999988 67654 4578999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
....+.+++.+++.| ++|+....++. |+..++++|+++++|+|++ ++....+..++++++++|+.+++
T Consensus 168 -~~~~~~~~~~~~~~g-~~v~~~~~~~~---------d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~ 235 (433)
T 4f11_A 168 -SEVRNDLTGVLYGED-IEISDTESFSN---------DPCTSVKKLKGNDVRIILG-QFDQNMAAKVFCCAYEENMYGSK 235 (433)
T ss_dssp -HHHHHHHHHHSSSSS-CEEEEEEEESS---------CCHHHHHHHHHTTCCEEEE-ECCHHHHHHHHHHHHHTTCCSTT
T ss_pred -HHHHHHHHHHHHHcC-ceEEEEeccCc---------CHHHHHHHHhhCCCeEEEE-eCcHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999 99998887753 5678899999999999999 99999999999999999999988
Q ss_pred EEEEEeccchhhc-----------ccCChhHHhhcCceEEEEeecCCC-------ChhHHHHHHHHHHHhhccCCCCCCC
Q 008863 262 SVWIVTNTVANAL-----------DSLNTTVISSMEGTLGIKSYYSDD-------SSPYKEFSALFRRNFTSEYPEEDHF 323 (550)
Q Consensus 262 ~~~i~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~f~~~~~~~~~~~~~~~~~~ 323 (550)
|+||.++...... ........+.++|++++..+.... ++..++|.++|+++.. +.
T Consensus 236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~-------~~ 308 (433)
T 4f11_A 236 YQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS-------GV 308 (433)
T ss_dssp CEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHT-------TS
T ss_pred eEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcC-------CC
Confidence 9999998832211 112223456789999888764321 1347778888877621 45
Q ss_pred CCCchhhHHhHHHHHHHHHHHhhccC-----------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceE
Q 008863 324 HPSIHALRAHDSIKIITEAIGRLNYN-----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLR 386 (550)
Q Consensus 324 ~~~~~~~~~yDav~~~a~Al~~~~~~-----------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~ 386 (550)
.++.+++++||||+++++|++++..+ +.+++.|+++|++++|+|++|+++| ++|++. ..|.
T Consensus 309 ~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~~ 386 (433)
T 4f11_A 309 GPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTIK 386 (433)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEEE
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeEE
Confidence 67888999999999999999998541 1147899999999999999999999 789986 8999
Q ss_pred EEEeeCCeeeEEEEEeCC
Q 008863 387 IVNVVGKKYKELDFWLPN 404 (550)
Q Consensus 387 i~~~~~~~~~~vG~w~~~ 404 (550)
|++++++++++||.|++.
T Consensus 387 I~~~~~g~~~~VG~~~~~ 404 (433)
T 4f11_A 387 FTQFQDSREVKVGEYNAV 404 (433)
T ss_dssp EEEEETTEEEEEEEEETT
T ss_pred EEEEECCceEEEEEEECC
Confidence 999999999999999863
|
| >3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=386.02 Aligned_cols=349 Identities=17% Similarity=0.256 Sum_probs=279.4
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~-~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+|+||+++|+++ ...+.|+++|+++||++ |++|++++.|+. +|+..+.+.+|+|++ ++|.+||||.+|..+.+
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~--g~~l~~~~~d~~~~d~~~a~~~~~~li~-~~V~aiiG~~~S~~~~a 75 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS--EFRLTPHIDNLEVANSFAVTNAFCSQFS-RGVYAIFGFYDKKSVNT 75 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS--SCEEEEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCCTTTHHH
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC--CeEEEEEEeecCCCChHHHHHHHHHHHh-cCcEEEECCCchhHHHH
Confidence 699999999984 57899999999999998 899999999965 599999999999998 59999999999999999
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
++++++.++||+|+++++ . . ...+|+||+.|+ ++.++++++++++|++|++|| |++|| ....+.+.+.
T Consensus 76 v~~~~~~~~ip~is~~~~--~--~--~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~~~~~~~ 143 (376)
T 3hsy_A 76 ITSFCGTLHVSFITPSFP--T--D--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLDS 143 (376)
T ss_dssp HHHHHHHHTCEEEECSCC--C--C--SCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHHHHHH
T ss_pred HHHHhccCcCceeecCCC--C--c--ccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchh--HHHHHHHHHH
Confidence 999999999999998765 2 2 245789999887 899999999999999999999 78999 9999999999
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchh
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 272 (550)
+++.| ++|.....++... .....|++.++++|++.++++|++ .+....+..++++++++||.++.|+||+++....
T Consensus 144 ~~~~g-~~v~~~~~~~~~~--~~~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~ 219 (376)
T 3hsy_A 144 AAEKK-WQVTAINVGNINN--DKKDETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (376)
T ss_dssp HHHHT-CEEEEEECTTCC----------------------CEEEE-ESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTT
T ss_pred hhhcC-CeEEEEEeccccc--cccchhHHHHHHHHhhCCCeEEEE-ECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCcc
Confidence 99999 9998776554210 002478999999999999999999 9999999999999999999988899999874322
Q ss_pred hcccCChhHHhhcC---ceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc-
Q 008863 273 ALDSLNTTVISSME---GTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY- 348 (550)
Q Consensus 273 ~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~- 348 (550)
..++ .+... +++++..+.+ .+|..++|.++|+++|...++......|+.+++++|||++++++|++++..
T Consensus 220 ~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~ 293 (376)
T 3hsy_A 220 DGDL-----LKIQFGGANVSGFQIVDY-DDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQ 293 (376)
T ss_dssp STTG-----GGSCCTTCEEEEEESCCT-TSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccch-----HHhhcCCcCceEEEEecC-CchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 2221 12222 3666665433 458899999999888765554322235788999999999999999999753
Q ss_pred ------------C-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCcc
Q 008863 349 ------------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSK 409 (550)
Q Consensus 349 ------------~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~ 409 (550)
| |.+|..|+++|++++|+|++|+|+||++|++.+..|+|+++.++++++||.|++..|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 294 RIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp TCCCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred CCccccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCcee
Confidence 1 346789999999999999999999999999988999999999999999999999888764
Q ss_pred c
Q 008863 410 T 410 (550)
Q Consensus 410 ~ 410 (550)
.
T Consensus 374 ~ 374 (376)
T 3hsy_A 374 T 374 (376)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-47 Score=378.18 Aligned_cols=351 Identities=14% Similarity=0.217 Sum_probs=292.8
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC----CCcEEEEEEec-CCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIRD-HNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~----~~~~l~~~~~d-~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
+++|+||++||.+ +.+...|+++|+++||+++ ++++|.+...+ ..+++..+.+.+|++++ ++|.|||||.+
T Consensus 3 P~~I~IG~lf~~~---~~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~V~aiiG~~~ 78 (389)
T 4gpa_A 3 PSSVQIGGLFIRN---TDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYS-RGVFAIFGLYD 78 (389)
T ss_dssp CSEEEEEEEECTT---CHHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHH-TTCSEEEECCC
T ss_pred CCeEEEEEEEcCC---ChHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHh-cCCEEEEeCCc
Confidence 3689999999988 4678899999999999987 35666666655 34688899999999997 69999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
|..+.+++++++.++||+++++++ .+ +... |.+++.|. +.+++++++++|+|++|++||+++.++ . ..
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~--~~--~~~~--~~~~~~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~--~-~~ 146 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFP--TE--GESQ--FVLQLRPS---LRGALLSLLDHYEWNCFVFLYDTDRGY--S-IL 146 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCC--CS--SCCS--SEEECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCS--H-HH
T ss_pred cHHHHHHHHHHHHhCCCceecccc--cc--cccc--CCccccCC---HHHHHHHHHHHcCCcEEEEEEecchhh--H-HH
Confidence 999999999999999999998766 33 3333 44555554 567999999999999999999887765 4 56
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+.+.+.+.| ++|.....++. ...+++..++++++.++++|++ .+....+..++++++++|+.++.|+|+.
T Consensus 147 ~~~~~~~~~~g-~~v~~~~~~~~------~~~d~~~~l~~i~~~~~~vIv~-~~~~~~~~~il~~a~~~g~~~~~~~~i~ 218 (389)
T 4gpa_A 147 QAIMEKAGQNG-WHVSAICVENF------NDVSYRQLLEELDRRQEKKFVI-DCEIERLQNILEQIVSVGKHVKGYHYII 218 (389)
T ss_dssp HHHHHHHHTTT-CEEEEEECTTC------CHHHHHHHHHHHHHHTCCEEEE-ECCHHHHHHHHHHHHHHTCSBTTCEEEE
T ss_pred HHHHHHHHhcC-ceEEEEeecCC------cchhHHHHHHHhhccCCcEEEE-EechhHHHHHHHHHHHhCCCCCceEEEE
Confidence 77888899999 99988776554 5589999999999999999999 9999999999999999999999999999
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
++.+...... ........++.++....+. ++.+++|.++|++.+...+.. .+..+..+++++||||+++++||+++
T Consensus 219 ~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~a~~YDAV~~~A~Al~~~ 294 (389)
T 4gpa_A 219 ANLGFKDISL--ERFIHGGANVTGFQLVDFN-TPMVTKLMDRWKKLDQREYPG-SETPPKYTSALTYDGVLVMAETFRSL 294 (389)
T ss_dssp CSSBGGGSCC--HHHHHHBCEEEEEECSCTT-SHHHHHHHHHHTTSCTTTSTT-TTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCccccchhh--hhhhhcccceEEEEeecCC-ChHHHHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9887654432 3344556677777765444 488999999887766544322 24567889999999999999999998
Q ss_pred ccC--------------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCC
Q 008863 347 NYN--------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (550)
Q Consensus 347 ~~~--------------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g 406 (550)
..+ |.+|..|.++|++++|+|+||+|+||++|+|.++.|+|++++++++++||.|++..|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~g 374 (389)
T 4gpa_A 295 RRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDK 374 (389)
T ss_dssp HHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTE
T ss_pred HhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCC
Confidence 542 457889999999999999999999999999988999999999999999999999888
Q ss_pred Cccc
Q 008863 407 FSKT 410 (550)
Q Consensus 407 ~~~~ 410 (550)
+...
T Consensus 375 l~~~ 378 (389)
T 4gpa_A 375 LVLI 378 (389)
T ss_dssp EEEC
T ss_pred eEEC
Confidence 7654
|
| >3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-48 Score=385.14 Aligned_cols=357 Identities=15% Similarity=0.279 Sum_probs=292.9
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCH-HHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDP-FQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~-~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
.+||||+++|+++..|.....|+++|+++||+++ +|++|+++++|+++++ ..+...+|+++. ++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~-~~V~aiiG~~~S~ 81 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILP-KGVVSVLGPSSSP 81 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGG-GCCSCEECCSSCH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHh-cCcEEEECCCCch
Confidence 4799999999999999999999999999999987 5799999999999975 467788999985 6999999999996
Q ss_pred H-HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeE--EEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 109 E-TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYL--IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 109 ~-~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
. +.+++++++.+++|+|+++++ + .++..+|++ ||+.|++..++.++++++++++|++|++||++++|| ..+
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~--~--~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g--~~l 155 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPE--E--TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECL--LRL 155 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCC--C--CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHH--HHT
T ss_pred hHHHHHHHHHhccCCCeEeccCC--c--CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHH--HHH
Confidence 5 469999999999999999876 3 334567888 999999999999999999999999999999999988 776
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.+.++ .+.+.| ++|.... ++ ...|++.++++|+++++|+|++ .+....+..++++++++||.++.|+|+
T Consensus 156 ~~~~~-~~~~~g-~~v~~~~-~~-------~~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i 224 (393)
T 3om0_A 156 EELVR-GFLISK-ETLSVRM-LD-------DSRDPTPLLKEIRDDKVSTIII-DANASISHLVLRKASELGMTSAFYKYI 224 (393)
T ss_dssp HHHHH-HHHHSS-SCEEEEE-CC--------CCCSHHHHHHHHHHTCSEEEE-ESCHHHHHHHHHHHHHTTTTSTTCEEE
T ss_pred HHHHH-hhhccC-CeEEEEe-cC-------CCCCHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHHHHcCcccCCeEEE
Confidence 66554 466678 8887654 32 2358899999999999999999 999999999999999999999889999
Q ss_pred EeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHh
Q 008863 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (550)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (550)
.++......++.. ......|++++..+.+ .+|.+++|.++|+++|...+.......|+.+++++|||++++++|+++
T Consensus 225 ~~~~~~~~~~l~~--~~~~~~~~~g~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~ 301 (393)
T 3om0_A 225 LTTMDFPILHLDG--IVEDSSNILGFSMFNT-SHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRE 301 (393)
T ss_dssp ECCTTGGGCCCTT--TCCSSCSEEEEECCCT-TSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred Eecccccccchhh--hhccCCcEEEEEEecC-CccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHH
Confidence 9876554333221 1233457777776543 458899999999999874321111134678899999999999999998
Q ss_pred hccC---------------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCccc
Q 008863 346 LNYN---------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT 410 (550)
Q Consensus 346 ~~~~---------------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~~ 410 (550)
+... |.++..|+++|++++|+|++|+++||++|++.+..|+|++++++++++||+|++..|+..+
T Consensus 302 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 302 LNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMN 381 (393)
T ss_dssp HTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC------
T ss_pred HhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCcccc
Confidence 8641 4689999999999999999999999999999889999999999999999999998887654
|
| >3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-47 Score=377.94 Aligned_cols=349 Identities=15% Similarity=0.251 Sum_probs=296.5
Q ss_pred CCCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+++|+||+++|+++. ....|+++|++++|+++ +|++++.|+++ |+..+.+.+|+++. ++|.+|+||.+|..
T Consensus 7 ~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g---~l~~~~~D~~~~d~~~a~~~~~~l~~-~~V~aiiG~~~S~~ 79 (384)
T 3saj_A 7 MPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP---KLLPQIDIVNISDSFEMTYRFCSQFS-KGVYAIFGFYERRT 79 (384)
T ss_dssp CCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS---EEEEEEEECCTTCHHHHHHHHHHHHH-TTCSCEEECCCHHH
T ss_pred CCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC---ccceeeEecccCchhhHHHHHHHHHh-cCeEEEECCCCHHH
Confidence 3478999999999954 88899999999999984 99999999876 99999999999997 59999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
+.+++++++.+++|+|++++ +..+ ..+|.|++.|+ ++.++++++++++|++|++|| +++|| ....+.+
T Consensus 80 ~~a~~~~~~~~~iP~is~~~----~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g--~~~~~~~ 147 (384)
T 3saj_A 80 VNMLTSFCGALHVCFITPSF----PVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRG--LSVLQRV 147 (384)
T ss_dssp HHHHHHHHHHHTCCEEECSC----CCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHHH
T ss_pred HHHHHHHhccCCCCeEeccc----cCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchh--HHHHHHH
Confidence 99999999999999999853 3333 44678888887 899999999999999999999 66899 9999999
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEecc
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (550)
.+.+++.| ++|.....++. ...|+..++.+|+++++|+|++ .+....+..++++++++||.++.|+||+++.
T Consensus 148 ~~~~~~~g-~~v~~~~~~~~------~~~d~~~~l~~ik~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~ 219 (384)
T 3saj_A 148 LDTAAEKN-WQVTAVNILTT------TEEGYRMLFQDLEKKKERLVVV-DCESERLNAILGQIVKLEKNGIGYHYILANL 219 (384)
T ss_dssp HHHHHHHT-CEEEEEEGGGC------CHHHHHHTTTTCCSCSEEEEEE-ECCGGGHHHHHHHHHHTCCTTCEEEEEESSS
T ss_pred HHHhhhcC-ceEEEEEeccC------CchhHHHHHHHHhccCCcEEEE-EcCHHHHHHHHHHHHHcCCCCCCcEEEEECC
Confidence 99999999 99998774433 4578999999999999999999 9999999999999999999999999999886
Q ss_pred chhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc-
Q 008863 270 VANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY- 348 (550)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~- 348 (550)
+....++ ........|++++..+.+ .+|..++|.++|+++|...++......++.+++++|||++++++|++++..
T Consensus 220 ~~~~~~~--~~~~~~~~~v~~~~~~~~-~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~ 296 (384)
T 3saj_A 220 GFMDIDL--NKFKESGANVTGFQLVNY-TDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQ 296 (384)
T ss_dssp CGGGSCH--HHHHHTTCCEEEEECCCT-TSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccH--HHhhCCCcceEEEEeecC-CChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 4433221 122233456777776544 458999999999999876654332335677899999999999999998764
Q ss_pred -------------------CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCcc
Q 008863 349 -------------------NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSK 409 (550)
Q Consensus 349 -------------------~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~ 409 (550)
.|.+|..|+++|++++|+|++|+++||++|++.+..|+|+++++.++++||.|++..|+..
T Consensus 297 ~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~~ 376 (384)
T 3saj_A 297 RIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVP 376 (384)
T ss_dssp TCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred ccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCCCccc
Confidence 1358999999999999999999999999999988999999999999999999999888654
|
| >3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=374.18 Aligned_cols=358 Identities=19% Similarity=0.282 Sum_probs=299.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~-~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++|+||+++|++ +..|.....|+++|+++||+++ ++++|++++.|.. .|+..+...+|++++ ++|.+||||.+|
T Consensus 3 ~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~-~~V~aiiG~~~S 81 (395)
T 3h6g_A 3 HVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLS-LGVAAIFGPSHS 81 (395)
T ss_dssp EEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHH-HCCSCEECCSSH
T ss_pred cceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhh-cCcEEEECCCCh
Confidence 589999999997 3567889999999999999987 5789999998776 689999999999997 599999999999
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..+.+++++++.+++|+|+++++ ++.++. ..+|+||+.|++..++.++++++++++|++|++|+ +++|| ....+
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~--~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g--~~~~~ 155 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWK--HQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTG--LIRLQ 155 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCC--CCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHH--HHHTH
T ss_pred hHHHHHHHHHhcCCCCeEeeccC--cccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhH--HHHHH
Confidence 99999999999999999999988 666543 46789999999999999999999999999999998 56788 88899
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.... ++. ...|+..++++|+++++++|++ .+....+..++++++++||.++.|+|+++
T Consensus 156 ~~~~~~~~~g-~~v~~~~-~~~------~~~d~~~~l~~i~~~~~~vi~~-~~~~~~~~~~~~qa~~~gl~~~~~~~i~~ 226 (395)
T 3h6g_A 156 ELIKAPSRYN-LRLKIRQ-LPA------DTKDAKPLLKEMKRGKEFHVIF-DCSHEMAAGILKQALAMGMMTEYYHYIFT 226 (395)
T ss_dssp HHHTGGGTSS-CEEEEEE-CCS------SGGGGHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCSTTCEEEEC
T ss_pred HHHHhhhcCC-ceEEEEE-eCC------CchhHHHHHHHHhhcCCeEEEE-ECCHHHHHHHHHHHHHccccCCceEEEEe
Confidence 9999999999 9998765 654 3478999999999999999999 99999999999999999999999999988
Q ss_pred ccchhhcccCChhHHhhcCc--eEEEEeecCCCChhHHHHHHHHHHHhhccCCCCC----CCCCCchhhHHhHHHHHHHH
Q 008863 268 NTVANALDSLNTTVISSMEG--TLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED----HFHPSIHALRAHDSIKIITE 341 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~yDav~~~a~ 341 (550)
+......+.... ...| +.++..+ ...++..++|.++|++++....+... ...++.+++++|||++++++
T Consensus 227 ~~~~~~~~~~~~----~~~g~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~ 301 (395)
T 3h6g_A 227 TLDLFALDVEPY----RYSGVNMTGFRIL-NTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSV 301 (395)
T ss_dssp CTTGGGBCCTTT----TTSCCEEEEEECS-CTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHH
T ss_pred cCceeEechHHh----ccCccceEEEEEe-cCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHH
Confidence 653322222111 1233 3555544 33458899999999886643332110 11256789999999999999
Q ss_pred HHHhhcc------------CCCCHHHHHHHHHhCcccccceeEEEeC-CCCCCCCceEEEEeeCCeeeEEEEEeCCCCCc
Q 008863 342 AIGRLNY------------NISSPEMLLRQMLSSDFSGLSGKIRFKD-GELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (550)
Q Consensus 342 Al~~~~~------------~~~~~~~l~~~l~~~~~~G~tG~i~f~~-~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~ 408 (550)
|+++++. .|.++..|+++|++++|+|++|+++||+ +|++.+..|.|++++++++++||.|++..|+.
T Consensus 302 Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~ 381 (395)
T 3h6g_A 302 AVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLN 381 (395)
T ss_dssp HHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEEC
T ss_pred HHHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCcc
Confidence 9999865 1458999999999999999999999998 99999889999999999999999999998876
Q ss_pred ccc
Q 008863 409 KTS 411 (550)
Q Consensus 409 ~~~ 411 (550)
...
T Consensus 382 ~~~ 384 (395)
T 3h6g_A 382 MTE 384 (395)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
|
| >1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=376.03 Aligned_cols=358 Identities=15% Similarity=0.180 Sum_probs=291.1
Q ss_pred CCCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC-------CCcEEEEEEecCCCCHHHHHHHHHHhhh---cCC
Q 008863 31 IEEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS-------RNHKLSLQIRDHNRDPFQAATAAQELIN---KEK 97 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~-------~~~~l~~~~~d~~~~~~~a~~~~~~li~---~~~ 97 (550)
.+++|+||+++|+++ ..|.....|+++|+++||+++ +|++|+++++|+++++. ++..+.+++. +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 346899999999983 345678899999999999875 47999999999999997 7665555442 249
Q ss_pred eEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCC-CCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEE
Q 008863 98 VKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSR-RWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYE 175 (550)
Q Consensus 98 v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~-~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~ 175 (550)
|.+||||.+|..+.+++++++.+++|+|+++++ ++.+ ++. .+||+||+.|++..++.++++++++|+|++|++|++
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~ 162 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGAL--AAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 162 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCC--SGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCC--chhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 999999999999999999999999999999998 7775 444 799999999999999999999999999999999999
Q ss_pred cCCCCCcch---hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHH
Q 008863 176 DNVYGGDSG---KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252 (550)
Q Consensus 176 ~~~~g~~~~---~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a 252 (550)
|++|| +. ..+.+++.+++.| +||.....++.. ..++...+++|+ +++|+|++ ++....+..+++++
T Consensus 163 d~~~g--~~~~~~~~~~~~~~~~~g-~~v~~~~~~~~~------~~d~~~~l~~i~-~~~~vii~-~~~~~~~~~~~~~~ 231 (441)
T 1jdp_A 163 DDKLE--RNCYFTLEGVHEVFQEEG-LHTSIYSFDETK------DLDLEDIVRNIQ-ASERVVIM-CASSDTIRSIMLVA 231 (441)
T ss_dssp CCSSS--CHHHHHHHHHHHHHHHHT-CEEEEEEECTTS------CCCHHHHHHHHH-HHCSEEEE-ESCHHHHHHHHHHH
T ss_pred cCCcc--cchHHHHHHHHHHHHhcC-cEEEEEEecCCc------ccCHHHHHHHhh-cCCcEEEE-ecCHHHHHHHHHHH
Confidence 99999 98 8999999999999 999887765432 246889999999 89999999 99999999999999
Q ss_pred HHcCCCCCCEEEEEec----------cchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCC
Q 008863 253 NRMGLVGKDSVWIVTN----------TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDH 322 (550)
Q Consensus 253 ~~~g~~~~~~~~i~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 322 (550)
+++|+.++.|+||.++ .|... ............+..++..+.. ..|.+++|.++|++++....+.. .
T Consensus 232 ~~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~g~~~~~~-~~p~~~~F~~~~~~~~~~~~~~~-~ 308 (441)
T 1jdp_A 232 HRHGMTSGDYAFFNIELFNSSSYGDGSWKRG-DKHDFEAKQAYSSLQTVTLLRT-VKPEFEKFSMEVKSSVEKQGLNM-E 308 (441)
T ss_dssp HHTTCTTTTCEEEEECSSCCCSTTTCTTCCS-STTHHHHHHHGGGEEEEEECCC-CCHHHHHHHHHHHHHHHTTTCCC-C
T ss_pred HHcCCCCCCEEEEEEeccccccccCCCCccC-CcccHHHHHHHHhheEEeecCC-CCchHHHHHHHHHHHHhhCCCCc-c
Confidence 9999998889999887 33221 1111111133455556655433 34899999999988753221111 1
Q ss_pred CCCCchhhHHhHHHHHHHHHHHhhc---cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee---CCeee
Q 008863 323 FHPSIHALRAHDSIKIITEAIGRLN---YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV---GKKYK 396 (550)
Q Consensus 323 ~~~~~~~~~~yDav~~~a~Al~~~~---~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~---~~~~~ 396 (550)
..+..+++++||||+++++||+++. .++.++++|+++|++++|.|++|+++||++|++. ..|+|++++ ++.++
T Consensus 309 ~~~~~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~~~~~g~~~ 387 (441)
T 1jdp_A 309 DYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTQE 387 (441)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTEEE
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEEecccCCCCceE
Confidence 1345678899999999999999984 3235899999999999999999999999999986 899999986 46799
Q ss_pred EEEEEeCCCC
Q 008863 397 ELDFWLPNFG 406 (550)
Q Consensus 397 ~vG~w~~~~g 406 (550)
+||.|++..+
T Consensus 388 ~VG~~~~~~~ 397 (441)
T 1jdp_A 388 VIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEcCCCC
Confidence 9999998654
|
| >2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=383.18 Aligned_cols=379 Identities=16% Similarity=0.248 Sum_probs=308.4
Q ss_pred CCcEEEEEEEecCC-------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhh-
Q 008863 32 EEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELIN- 94 (550)
Q Consensus 32 ~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~- 94 (550)
+++|+||+++|+++ ..|.+...|+++|+++||+++ ||++|+++++|+++++..|++.+.++++
T Consensus 12 ~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~~ 91 (555)
T 2e4u_A 12 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA 91 (555)
T ss_dssp CCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHhC
Confidence 46899999999973 357788899999999999987 6999999999999999999999988874
Q ss_pred -----------------------cCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecC
Q 008863 95 -----------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASN 150 (550)
Q Consensus 95 -----------------------~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~ 150 (550)
+++|.+||||.+|..+.+++.+++.+++|+|+++++ ++.+ ++..|||+||+.|+
T Consensus 92 ~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 92 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp TC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTCTTEEESSCC
T ss_pred cCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcC--CCccCCcccCCCceeeCCC
Confidence 578999999999999999999999999999999998 7774 56689999999999
Q ss_pred cHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-
Q 008863 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD- 229 (550)
Q Consensus 151 ~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~- 229 (550)
+..++.++++++++|+|+||++|++|++|| ....+.|++.+++.| ++|++...++... ...++..+++++++
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g--~~~~~~~~~~~~~~g-i~v~~~~~~~~~~----~~~~~~~~l~~i~~~ 242 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ICIATAEKVGRSN----IRKSYDSVIRELLQK 242 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTH--HHHHHHHHHHHHTTT-CEEEEEEEECTTC----CHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHH--HHHHHHHHHHHHHCC-ccEEEEEEeCCCC----ChHHHHHHHHHHhcc
Confidence 999999999999999999999999999999 999999999999999 9999988887532 45789999999964
Q ss_pred CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH-
Q 008863 230 KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL- 308 (550)
Q Consensus 230 ~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~- 308 (550)
+++++||+ .+....+..+++++.++|+ +++||.++.|........ .....++|++++..+.... |.+++|+..
T Consensus 243 s~a~vIi~-~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~f~~~~ 316 (555)
T 2e4u_A 243 PNARVVVL-FMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIVK-GSEHVAYGAITLELASHPV-RQFDRYFQSL 316 (555)
T ss_dssp TTCCEEEE-ECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGTT-TCHHHHTTCEEEEECCCCC-HHHHHHHHTC
T ss_pred CCCCEEEE-EcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhhc-cchhhcceEEEEEeccCCC-CcHHHHHhhC
Confidence 79999999 9999999999999999998 479999998875422211 1235678999988764443 666665542
Q ss_pred --------------HHHHhhccCC-------CCCCC--------CCCchhhHHhHHHHHHHHHHHhhccC----------
Q 008863 309 --------------FRRNFTSEYP-------EEDHF--------HPSIHALRAHDSIKIITEAIGRLNYN---------- 349 (550)
Q Consensus 309 --------------~~~~~~~~~~-------~~~~~--------~~~~~~~~~yDav~~~a~Al~~~~~~---------- 349 (550)
|...|..... .|.+. .+..+++.+||||+++++||+++..+
T Consensus 317 ~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~ 396 (555)
T 2e4u_A 317 NPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCD 396 (555)
T ss_dssp CTTTCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCG
T ss_pred CcccCCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCcccc
Confidence 3333322111 12111 14457888999999999999998541
Q ss_pred ---CCCHHHHHH-HHHhCccc------cccee-EEEeCCCCCCCCceEEEEee--CC--eeeEEEEEeCCCCCccccCCC
Q 008863 350 ---ISSPEMLLR-QMLSSDFS------GLSGK-IRFKDGELLNADTLRIVNVV--GK--KYKELDFWLPNFGFSKTSSKH 414 (550)
Q Consensus 350 ---~~~~~~l~~-~l~~~~~~------G~tG~-i~f~~~g~~~~~~~~i~~~~--~~--~~~~vG~w~~~~g~~~~~~~~ 414 (550)
..++++|++ +|++++|. |.+|. +.||++|++. ..|+|++++ ++ .+++||.|++ .+..
T Consensus 397 ~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~l~i----- 468 (555)
T 2e4u_A 397 AMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--TLSL----- 468 (555)
T ss_dssp GGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--SEEC-----
T ss_pred ccCCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--eEEE-----
Confidence 147889999 99999999 99996 9999999985 899999995 33 5899999984 2211
Q ss_pred CcCCcCCCccccCCCCccccCCCCCCCCCCccccC
Q 008863 415 NVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMP 449 (550)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~wp~~~~~~~p~~~~~~ 449 (550)
.+..|.|++ . +.|++.+-.
T Consensus 469 -------------~~~~I~W~~--~-~~P~S~CS~ 487 (555)
T 2e4u_A 469 -------------DVDSIHWSR--N-SVPTSQCSD 487 (555)
T ss_dssp -------------CGGGCCCTT--S-SCCCCCSSC
T ss_pred -------------eccccccCC--C-CCcceeeCC
Confidence 123499987 4 788876543
|
| >3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-46 Score=377.90 Aligned_cols=356 Identities=16% Similarity=0.235 Sum_probs=297.2
Q ss_pred CCCcEEEEEEEecC------------Cc-cchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhh
Q 008863 31 IEEVTKIGAIVDAN------------SQ-MGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELIN 94 (550)
Q Consensus 31 ~~~~i~IG~i~~~~------------~~-~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~ 94 (550)
.+++|.||++||.+ .. .|.+...|+++|+++||+++ ||++|+++++|+++++..|++.+.++++
T Consensus 10 ~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~ 89 (479)
T 3sm9_A 10 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVR 89 (479)
T ss_dssp ECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHh
Confidence 34789999999985 12 67889999999999999998 7999999999999999999999999997
Q ss_pred c------------------------CCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEec
Q 008863 95 K------------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMAS 149 (550)
Q Consensus 95 ~------------------------~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p 149 (550)
. ++|.+||||.+|..+.+++++++.+++|+|+++++ ++.+ ++.++||+||+.|
T Consensus 90 ~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~p 167 (479)
T 3sm9_A 90 ASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVP 167 (479)
T ss_dssp TCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTTTTEEESSC
T ss_pred CCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcC--CccccCcccCCCeEEeCC
Confidence 5 47999999999999999999999999999999998 7774 5667999999999
Q ss_pred CcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHH-HHhh
Q 008863 150 NDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGEL-KKVQ 228 (550)
Q Consensus 150 ~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l-~~i~ 228 (550)
++..++.++++++++|||+||++|++|++|| ....+.+++.+++.| +||.+.+.++... ...++...+ +.++
T Consensus 168 sd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G--~~~~~~~~~~~~~~G-i~v~~~~~i~~~~----~~~d~~~~l~~~i~ 240 (479)
T 3sm9_A 168 PDFYQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ISIATAEKVGRSN----IRKSYDSVIRELLQ 240 (479)
T ss_dssp CTHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHHHHHHHTTT-CEEEEEEEECC------CHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEecchhh--HHHHHHHHHHHHHCC-ceEEEEEEcCCCC----ChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999999 9999988887543 457888888 6788
Q ss_pred cCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH
Q 008863 229 DKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL 308 (550)
Q Consensus 229 ~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~ 308 (550)
++++++||+ ++....+..+++++.++|+. ++||.++.|........ .....++|++++..+.... |++++|+..
T Consensus 241 ~s~a~vIi~-~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~fl~~ 314 (479)
T 3sm9_A 241 KPNARVVVL-FMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK-GSEHVAYGAITLELASQPV-RQFDRYFQS 314 (479)
T ss_dssp CTTCCEEEE-ECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT-TCTTTTTTCEEEEECCCCC-HHHHHHHHT
T ss_pred cCCCeEEEE-EcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc-cccccCceEEEEEeccCCC-cchhhHhhc
Confidence 899999999 99999999999999999997 59999999875321111 1125678999999876665 889988765
Q ss_pred H----------HHHhhccCCCCC---------CCC-----------CCchhhHHhHHHHHHHHHHHhhcc--C-------
Q 008863 309 F----------RRNFTSEYPEED---------HFH-----------PSIHALRAHDSIKIITEAIGRLNY--N------- 349 (550)
Q Consensus 309 ~----------~~~~~~~~~~~~---------~~~-----------~~~~~~~~yDav~~~a~Al~~~~~--~------- 349 (550)
+ .+.+|...+.|. .|. .......+||||+++|+||+++.. +
T Consensus 315 ~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c 394 (479)
T 3sm9_A 315 LNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLC 394 (479)
T ss_dssp CCTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCC
T ss_pred cCcCcCCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCC
Confidence 2 333444333321 111 112346799999999999999853 1
Q ss_pred ----CCCHHHHH-HHHHhCccccc------ce-eEEEeCCCCCCCCceEEEEeeC----CeeeEEEEEe
Q 008863 350 ----ISSPEMLL-RQMLSSDFSGL------SG-KIRFKDGELLNADTLRIVNVVG----KKYKELDFWL 402 (550)
Q Consensus 350 ----~~~~~~l~-~~l~~~~~~G~------tG-~i~f~~~g~~~~~~~~i~~~~~----~~~~~vG~w~ 402 (550)
..++++|+ ++|++++|.+. +| .+.||++|+.. ..|+|++++. ..+++||.|+
T Consensus 395 ~~~~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 395 DAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM-GRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp HHHHSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCC-CCEEEEEEEESSSCEEEEEEEEES
T ss_pred CCCCCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcc-cceEEEEEEECCCcEEEEEEEEEe
Confidence 24788999 99999999988 55 89999999985 8999999973 3578999997
|
| >1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=374.06 Aligned_cols=357 Identities=14% Similarity=0.173 Sum_probs=293.7
Q ss_pred CcEEEEEEEecC---CccchhHHH-HHHHHHHHHhcCC---CCcEEEEEEecC-----CCCHHHHHHHHHHhhhcCCeEE
Q 008863 33 EVTKIGAIVDAN---SQMGKQAIT-AMKIAVQNFNSDS---RNHKLSLQIRDH-----NRDPFQAATAAQELINKEKVKV 100 (550)
Q Consensus 33 ~~i~IG~i~~~~---~~~g~~~~~-a~~~Av~~iN~~~---~~~~l~~~~~d~-----~~~~~~a~~~~~~li~~~~v~a 100 (550)
++|+||+++|++ +..|..... |+++|+++||+++ +|++|+++++|+ +|++..++..+++++.+++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 379999999998 356777777 9999999999997 589999999999 4556688888888887789999
Q ss_pred EEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEE------
Q 008863 101 IAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAI------ 173 (550)
Q Consensus 101 iiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii------ 173 (550)
||||.+|..+.+++++++.+++|+|+++++ ++.+ ++..+||+||+.|++..++.++++++++|+|++|++|
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~ 158 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAP--ALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRL 158 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCC--CGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEccccc--ccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCC
Confidence 999999999999999999999999999998 6764 4456999999999999999999999999999999999
Q ss_pred EEcCCCCCcchhHHHHHHHHhc-CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHH
Q 008863 174 YEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252 (550)
Q Consensus 174 ~~~~~~g~~~~~~~~l~~~l~~-~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a 252 (550)
+++++|| .. .+.+.+.+.+ .| ++|.....++. ...|+..++++|++ ++|+|++ ++....+..+++++
T Consensus 159 ~~~~~~g--~~-~~~~~~~~~~~~g-~~v~~~~~~~~------~~~d~~~~l~~i~~-~~~viv~-~~~~~~~~~~~~~a 226 (435)
T 1dp4_A 159 GDDRPCF--FI-VEGLYMRVRERLN-ITVNHQEFVEG------DPDHYPKLLRAVRR-KGRVIYI-CSSPDAFRNLMLLA 226 (435)
T ss_dssp SSCCHHH--HH-HHHHHHHHHHHHC-CEEEEEEECTT------CGGGHHHHHHHHHH-HCSEEEE-ESCHHHHHHHHHHH
T ss_pred CCcchHH--HH-HHHHHHHHHhhcC-eEEEEEEEecC------chhhHHHHHHHHHh-hCceEEE-ecChHHHHHHHHHH
Confidence 5555565 44 3556677777 89 99988776533 34689999999999 9999999 99999999999999
Q ss_pred HHcCCCCCCEEEEEeccchhhcc---------------cCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccC
Q 008863 253 NRMGLVGKDSVWIVTNTVANALD---------------SLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEY 317 (550)
Q Consensus 253 ~~~g~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 317 (550)
+++|+.++.|+||.++.|..... .......++.+|++.+.+..+ .++.+++|.++|++.+...+
T Consensus 227 ~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~ 305 (435)
T 1dp4_A 227 LNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEP-DNPEYLEFLKQLKLLADKKF 305 (435)
T ss_dssp HHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCC-CSHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCC-CChhHHHHHHHHHHHhcCCC
Confidence 99999887799999987764320 001223456788887776443 45889999999887764321
Q ss_pred CCCCC--CCCCchhhHHhHHHHHHHHHHHhhccC---CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEe--
Q 008863 318 PEEDH--FHPSIHALRAHDSIKIITEAIGRLNYN---ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV-- 390 (550)
Q Consensus 318 ~~~~~--~~~~~~~~~~yDav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~-- 390 (550)
.|.. ..++.+++++|||++++++||+++..+ +.++++|+++|++++|.|++|+++||++|++. ..|.|+++
T Consensus 306 -~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~i~~~~~ 383 (435)
T 1dp4_A 306 -NFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDP 383 (435)
T ss_dssp -CCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECT
T ss_pred -CcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCCCCcc-ceeEEEEecC
Confidence 1111 135668889999999999999998321 34899999999999999999999999999986 79999999
Q ss_pred eCCeeeEEEEEeCCCC
Q 008863 391 VGKKYKELDFWLPNFG 406 (550)
Q Consensus 391 ~~~~~~~vG~w~~~~g 406 (550)
.++.+++||.|++..+
T Consensus 384 ~~g~~~~vg~~~~~~~ 399 (435)
T 1dp4_A 384 ETGAFRVVLNYNGTSQ 399 (435)
T ss_dssp TTCCEEEEEEECTTTC
T ss_pred CCCcEEEEEEecCCCc
Confidence 5678999999997654
|
| >3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=365.32 Aligned_cols=322 Identities=18% Similarity=0.279 Sum_probs=267.4
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHH-hhhcCCeEEEEc-----
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQE-LINKEKVKVIAG----- 103 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~-li~~~~v~aiiG----- 103 (550)
+++|+||+++|++ ....|+++|++++|+++ .+++|+++..|+++||..+.+.+|+ |++ ++|.+|+|
T Consensus 3 ~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li~-~~V~aiiG~~~~~ 76 (384)
T 3qek_A 3 PKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLIS-SQVYAILVSHPPA 76 (384)
T ss_dssp CEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHHHHHHHHTGG-GTEEEEEECC---
T ss_pred ceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHHHHHHHHHHH-cCceEEEEecCCC
Confidence 4689999999998 77899999999999987 3678999999999999999988777 787 49999999
Q ss_pred CCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCc
Q 008863 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (550)
Q Consensus 104 ~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~ 182 (550)
|.++..+.+++++++.+++|+|+++++ ++.+ ++..|||+||+.|++..++.++++++++++|++|++||+|++||
T Consensus 77 ~~~s~~~~a~~~~~~~~~iP~is~~~~--~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G-- 152 (384)
T 3qek_A 77 PTDHLTPTPISYTAGFYRIPVIGLTTR--MSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEG-- 152 (384)
T ss_dssp -----CCHHHHHHHHTTTCCEEESSCC--CGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--
T ss_pred CccchhHHHHHHHHhcCCCCEEecccC--chhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCccc--
Confidence 567778889999999999999999988 6664 46688999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCCeEEE-----------EE-------eecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHH
Q 008863 183 SGKLALLAEALQNVSSSEIQ-----------SR-------LVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~-----------~~-------~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~ 244 (550)
....+.|++.+++.| +++. +. +.++... ....|+...+++|+++++|+|++ ++....
T Consensus 153 ~~~~~~~~~~~~~~g-~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~---~~~~d~~~~l~~i~~~~~~vii~-~~~~~~ 227 (384)
T 3qek_A 153 RAAQKKLETLLEGKE-SKSKKRNYENLDQLSYDNKRGPKADKVLQFE---PGTKNLTALLLEAKELEARVIIL-SASEDD 227 (384)
T ss_dssp HHHHHHHHHHHC---------------CCSCCCCCCCCEEEEEEEEC---TTCSCCHHHHHHHHTSSCCEEEE-ECCHHH
T ss_pred HHHHHHHHHHHHhcc-CccccccccccceeeeccccCcccceecccC---CchhhHHHHHHHHHhcCCcEEEE-ECCHHH
Confidence 999999999999988 7531 11 1111100 02368999999999999999999 999999
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCC
Q 008863 245 TIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFH 324 (550)
Q Consensus 245 ~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 324 (550)
+..++++++++||++++|+||.++.|..... .....+|++++..+...
T Consensus 228 ~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~-----~~~~~~g~lg~~~~~~~--------------------------- 275 (384)
T 3qek_A 228 ATAVYKSAAMLDMTGAGYVWLVGEREISGSA-----LRYAPDGIIGLQLINGK--------------------------- 275 (384)
T ss_dssp HHHHHHHHHHTTCSSTTCEEECCSGGGSGGG-----GSSCCTTCEEEEETTTT---------------------------
T ss_pred HHHHHHHHHHcCCccCCeEEEEecccccccc-----ccccCCccEEEEEcCCC---------------------------
Confidence 9999999999999998899999998764321 23567899998875322
Q ss_pred CCchhhHHhHHHHHHHHHHHhhcc----------------CCCCHHHHHHHHHhCcc-cccceeEEEeCCCCCCCCceEE
Q 008863 325 PSIHALRAHDSIKIITEAIGRLNY----------------NISSPEMLLRQMLSSDF-SGLSGKIRFKDGELLNADTLRI 387 (550)
Q Consensus 325 ~~~~~~~~yDav~~~a~Al~~~~~----------------~~~~~~~l~~~l~~~~~-~G~tG~i~f~~~g~~~~~~~~i 387 (550)
..++.+||||+++++|++++.. .|..+..|.+.+++++| +|++|++.||++|++.+..|+|
T Consensus 276 --~~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I 353 (384)
T 3qek_A 276 --NESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSI 353 (384)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEE
T ss_pred --chhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEE
Confidence 1267899999999999998753 14578899999999998 9999999999999987799999
Q ss_pred EEeeCCeeeEEEEEe
Q 008863 388 VNVVGKKYKELDFWL 402 (550)
Q Consensus 388 ~~~~~~~~~~vG~w~ 402 (550)
+++++.++++||.|+
T Consensus 354 ~~~~~~~~~~VG~w~ 368 (384)
T 3qek_A 354 MNLQNRKLVQVGIFN 368 (384)
T ss_dssp EEEETTEEEEEEEEC
T ss_pred EEEcCCceEEEEEEe
Confidence 999999999999998
|
| >3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=370.20 Aligned_cols=358 Identities=18% Similarity=0.268 Sum_probs=299.1
Q ss_pred CCCcEEEEEEEecCC-----------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHH
Q 008863 31 IEEVTKIGAIVDANS-----------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQ 90 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~-----------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~ 90 (550)
.+++|.||++||.+. ..|.+...|+.+|+|+||+++ ||++|+++++|+++++..|++.+.
T Consensus 14 ~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~ 93 (496)
T 3ks9_A 14 MDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSI 93 (496)
T ss_dssp ECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHH
Confidence 457899999999752 145778899999999999998 799999999999999999999999
Q ss_pred Hhh----------------------------hcCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-cCCCC
Q 008863 91 ELI----------------------------NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-MSRRW 141 (550)
Q Consensus 91 ~li----------------------------~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~~~~~ 141 (550)
+++ .+++|.+||||.+|..+.+++++++.+++|+|+++++ ++.+ ++.++
T Consensus 94 ~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~ 171 (496)
T 3ks9_A 94 EFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSAT--SIDLSDKTLY 171 (496)
T ss_dssp HHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTC
T ss_pred HHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcC--CccccCccCC
Confidence 998 3578999999999999999999999999999999998 7774 56679
Q ss_pred CeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHH
Q 008863 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (550)
Q Consensus 142 ~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~ 221 (550)
||+||+.|++..++.++++++++|+|+||++|++|++|| ....+.+++.+++.| +||++.+.++... ...++.
T Consensus 172 p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G--~~~~~~~~~~~~~~G-i~v~~~~~i~~~~----~~~d~~ 244 (496)
T 3ks9_A 172 KYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYG--ESGMDAFKELAAQEG-LSIAHSDKIYSNA----GEKSFD 244 (496)
T ss_dssp TTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHHHHHHHHTT-CEEEEEEEECTTC----CHHHHH
T ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHH--HHHHHHHHHHHHHcC-ceEEEEEEECCCC----CHHHHH
Confidence 999999999999999999999999999999999999999 999999999999999 9999988776433 567999
Q ss_pred HHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCC
Q 008863 222 GELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDS 299 (550)
Q Consensus 222 ~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 299 (550)
.++++|++. ++++|++ ++....+..++++++++|+.++ +.||.++.|........ .....++|++++..+....
T Consensus 245 ~~l~~i~~~~~~a~vii~-~~~~~~~~~l~~~~~~~g~~~k-~~~i~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i- 320 (496)
T 3ks9_A 245 RLLRKLRERLPKARVVVC-FCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVIE-GYEVEANGGITIKLQSPEV- 320 (496)
T ss_dssp HHHHHHHTTTTTTCEEEE-ECCHHHHHHHHHHHHHHTCCSC-CEEEECTTTTTCHHHHT-TCHHHHTTCEEEEECCCCC-
T ss_pred HHHHHHHhccCceEEEEE-ecChHHHHHHHHHHHHhCCCCc-EEEEEechhcccccccc-ccccccCceEEEeccCCcC-
Confidence 999999985 8899999 9999999999999999999864 57899998864322211 1235678999999876655
Q ss_pred hhHHHHHHH----------HHHHhhccCCCCC-------------CCCC----------CchhhHHhHHHHHHHHHHHhh
Q 008863 300 SPYKEFSAL----------FRRNFTSEYPEED-------------HFHP----------SIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 300 ~~~~~f~~~----------~~~~~~~~~~~~~-------------~~~~----------~~~~~~~yDav~~~a~Al~~~ 346 (550)
|.+++|+++ |.+.||+..+.|. .|.. ......+|+||+++|+||+++
T Consensus 321 pgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m 400 (496)
T 3ks9_A 321 RSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNM 400 (496)
T ss_dssp HHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 899998865 3444555444431 1111 112346999999999999988
Q ss_pred cc---------C----CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeC-----CeeeEEEEEe
Q 008863 347 NY---------N----ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWL 402 (550)
Q Consensus 347 ~~---------~----~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~ 402 (550)
.. | ...+++|..+|++++|.+.+| .+.||++|+.. ..|+|++++. ..+++||.|+
T Consensus 401 ~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 474 (496)
T 3ks9_A 401 HHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWH 474 (496)
T ss_dssp HHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCC-CEEEEEEEEECC--CEEEEEEEEEE
T ss_pred HhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCcc-ceEEEEEEEECCCCCEEEEEEEEEe
Confidence 53 1 236889999999999999999 79999999985 8999999973 3478999997
|
| >3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-46 Score=378.94 Aligned_cols=357 Identities=18% Similarity=0.291 Sum_probs=270.4
Q ss_pred CCcEEEEEEEecCC-------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHhhhc
Q 008863 32 EEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINK 95 (550)
Q Consensus 32 ~~~i~IG~i~~~~~-------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~li~~ 95 (550)
+++|+||+++|.++ ..|.+...|+++|+|+||+++ ||++|+++++|+++++..+++.+.++++.
T Consensus 14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~~ 93 (481)
T 3mq4_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQA 93 (481)
T ss_dssp CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGGG
T ss_pred CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHhC
Confidence 46899999999983 357889999999999999998 79999999999999999999999999874
Q ss_pred ----------------------CCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcH
Q 008863 96 ----------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDS 152 (550)
Q Consensus 96 ----------------------~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~ 152 (550)
++|.+||||.+|..+.+++++++.+++|+|+++++ ++. .++.+|||+||+.|++.
T Consensus 94 ~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 94 LIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYAST--APELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCC--CGGGGCTTTTTTEEESSCCTH
T ss_pred CcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccC--CccccCcccCCceEEecCchH
Confidence 68999999999999999999999999999999998 777 45678999999999999
Q ss_pred HhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhc-CCCeEEEEEeecCCCCCCCCChH--HHHHHHHHhh-
Q 008863 153 EQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKE--AVRGELKKVQ- 228 (550)
Q Consensus 153 ~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~-~g~~~v~~~~~~~~~~~~~~~~~--d~~~~l~~i~- 228 (550)
.++.++++++++|||+||++|++|++|| ....+.+++.+.+ .| +||.+.+.++... ... ++...+.+++
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G--~~~~~~~~~~~~~~~G-i~va~~~~i~~~~----~~~~~d~~~~l~~i~~ 244 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYG--EKGVESFTQISKEAGG-LSIAQSVRIPQER----KDRTIDFDRIIKQLLD 244 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHH--HHHHHHHHHCC---CC-CEECCCCCCCCC----------CCSHHHHCCCC
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhH--HHHHHHHHHHHHHhCC-EEEEEEEEcCCCC----ccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999 9999999988875 78 9999887776432 223 7788899998
Q ss_pred cCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHH
Q 008863 229 DKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL 308 (550)
Q Consensus 229 ~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~ 308 (550)
++++++||+ .+....+..++++++++|+.++ ++||.++.|........ .....++|++++..+.... |.+++|+.+
T Consensus 245 ~s~a~vIi~-~~~~~~~~~l~~~~~~~g~~~~-~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~fl~~ 320 (481)
T 3mq4_A 245 TPNSRAVVI-FANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKINPLH-QHEDIAEGAITIQPKRATV-EGFDAYFTS 320 (481)
T ss_dssp C----CEEE-CCCSSHHHHHC----------C-CCEEEC------------------CCCEEEEECCCCC-HHHHHHHHT
T ss_pred cCCCEEEEE-EEChHHHHHHHHHHHHccCCcc-eEEEEECcccccccccc-ccchhhccEEEEecCcCcc-ccHHHHhhc
Confidence 579999999 9999999999999999999763 69999999875432221 2245688999999876655 899998765
Q ss_pred H----------HHHhhccCCCCC-------------CCC------------CCchhhHHhHHHHHHHHHHHhhcc--C--
Q 008863 309 F----------RRNFTSEYPEED-------------HFH------------PSIHALRAHDSIKIITEAIGRLNY--N-- 349 (550)
Q Consensus 309 ~----------~~~~~~~~~~~~-------------~~~------------~~~~~~~~yDav~~~a~Al~~~~~--~-- 349 (550)
+ .+.+|+..+.|. .|. .......+||||+++|+||+++.. +
T Consensus 321 ~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~ 400 (481)
T 3mq4_A 321 RTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD 400 (481)
T ss_dssp CCTTTCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCcCcCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC
Confidence 2 334444332221 011 013345699999999999998853 1
Q ss_pred ---------CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeC-----CeeeEEEEEe
Q 008863 350 ---------ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWL 402 (550)
Q Consensus 350 ---------~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~ 402 (550)
..++++|+++|++++|.+.+| .+.||++|+.. ..|+|++++. ..+++||.|+
T Consensus 401 ~~~~c~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 YRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ---CCHHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEE
T ss_pred CCCCCCCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEc
Confidence 246789999999999999999 89999999985 8999999962 2678999998
|
| >3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=332.98 Aligned_cols=327 Identities=17% Similarity=0.223 Sum_probs=250.4
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
..+.||++|..+.. +.+++.|++..|...+.+++..++. .+.+||..+.+.+|+++..++|.|||| |.++..+
T Consensus 3 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a 77 (364)
T 3qel_B 3 PSIGIAVILVGTSD-----EVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEA 77 (364)
T ss_dssp CEEEEEEEEESSCC-----HHHHTC---------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCTH
T ss_pred CceEEEEEEcccch-----hhhhccccCccccccCCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCchH
Confidence 57999999977642 8999999999997766678887655 578899999999999998778988875 4544444
Q ss_pred HH--HHHhhccCCccEEeccCCCCCC-c-ccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 111 AV--VAEIASRVQVPILSFAAPAVTP-L-SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 111 ~~--v~~~~~~~~iP~is~~~~~~~~-~-~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
.+ ++.+|+.++||+|+++++ ++ . .++.++|++||+.|++..+++++++++++|||++|++||+|+ .| ...+.
T Consensus 78 ~a~~v~~i~~~~~iP~IS~~at--~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~g-~~~~~ 153 (364)
T 3qel_B 78 IAQILDFISAQTLTPILGIHGG--SSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-PG-YQDFV 153 (364)
T ss_dssp HHHHHHHHHHHHTCCEEEEEGG--GGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-TT-HHHHH
T ss_pred HHHHHHHHHhccCCCEEEeecC--CCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-cc-HHHHH
Confidence 44 899999999999999998 77 5 566789999999999999999999999999999999999985 43 23344
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHH-HHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGEL-KKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l-~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
+.+++.+...+ +|+.....++... ...+++..+ ++++++++++||+ +|+.+.+..++++|.++||++++|+||
T Consensus 154 ~~l~~~~~~~~-ici~~~~~i~~~~----~~~~~~~~l~~~i~~~~a~ViIv-~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 154 NKIRSTIENSF-VGWELEEVLLLDM----SLDDGDSKIQNQLKKLQSPIILL-YCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHTCS-SCCEEEEEEEECT----TSCSSSCHHHHHHTTCCCSEEEE-ESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHhhccc-cceEEEEEEccCC----CcccHHHHHHHHHHccCCcEEEE-EcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 44444443444 4666655443322 224567778 6899999999999 999999999999999999999999999
Q ss_pred EeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHh
Q 008863 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (550)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (550)
+++.+....+... ..+..|++++.... |. ....+++||||+++|+|+++
T Consensus 228 ~t~~~~~~~~~~~---~~~~~g~~~~~~~~------------------W~----------~~~~~~~yDaV~~~A~A~~~ 276 (364)
T 3qel_B 228 VPSLVAGDTDTVP---SEFPTGLISVSYDE------------------WD----------YGLPARVRDGIAIITTAASD 276 (364)
T ss_dssp ECHHHHCSTTCCC---TTSCTTCEECCBCT------------------TT----------SCHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCccccc---ccCCCceEEEeecc------------------ch----------hhHHHHHHHHHHHHHHHHHH
Confidence 9988754433322 24567877765421 10 12467899999999999987
Q ss_pred hcc-----------C-------CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEEEEEeCCCC
Q 008863 346 LNY-----------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLPNFG 406 (550)
Q Consensus 346 ~~~-----------~-------~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~~~g 406 (550)
+.. | |.+|..|.++|++++|+|+ ++.||++|+|.++.|+|++++ +.++++||.|+. .+
T Consensus 277 ~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~~-~~ 353 (364)
T 3qel_B 277 MLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWKD-KS 353 (364)
T ss_dssp HHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEECS-SC
T ss_pred HHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEECC-Ce
Confidence 643 1 3477899999999999998 899999999999999999998 688999999983 34
Q ss_pred Cc
Q 008863 407 FS 408 (550)
Q Consensus 407 ~~ 408 (550)
+.
T Consensus 354 L~ 355 (364)
T 3qel_B 354 LQ 355 (364)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=326.13 Aligned_cols=351 Identities=19% Similarity=0.185 Sum_probs=293.9
Q ss_pred CCcEEEEEEEecCC--ccchhHHHHHHHHHHHHhcCC--CC-cEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANS--QMGKQAITAMKIAVQNFNSDS--RN-HKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~--~~g~~~~~a~~~Av~~iN~~~--~~-~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
+++|+||+++|+++ ..|.....|+++|++++|+++ .| ++|+++++|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 46899999999986 346678899999999999998 34 99999999999999999999999998679999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
+..+.++++++...+||+|++.++ ++.+. ...+||+||+.|++..++.++++++.+++|++|++|+++++|| ...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~--~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~ 158 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPL--TDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYG--QSA 158 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCC--CGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHH--HHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCC--chhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHh--HHH
Confidence 999999999999999999999887 56543 5578999999999999999999999999999999999998999 999
Q ss_pred HHHHHHHHhcC--CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEE
Q 008863 186 LALLAEALQNV--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (550)
Q Consensus 186 ~~~l~~~l~~~--g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (550)
.+.+++.+++. | ++++....++... .|+...++++++.++++|++ .+....+..++++++++|+... +
T Consensus 159 ~~~~~~~l~~~~~g-~~vv~~~~~~~~~------~d~~~~~~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~--~ 228 (387)
T 3i45_A 159 VARFKELLLAARPE-VTFVAEQWPALYK------LDAGPTVQALQQAEPEGLFN-VLFGADLPKFVREGRVRGLFAG--R 228 (387)
T ss_dssp HHHHHHHHHHHCTT-CEEEEEECCCTTC------CCHHHHHHHHHHTCCSEEEE-CCCTTHHHHHHHHHHHHTSSTT--C
T ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCC------cCHHHHHHHHHhCCCCEEEE-cCccHHHHHHHHHHHHcCCCCC--C
Confidence 99999999998 8 8988777666533 58999999999999999999 9899999999999999999654 3
Q ss_pred EEEeccc--hhhcccCChhHHhhcCceEEEEe-ecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHH
Q 008863 264 WIVTNTV--ANALDSLNTTVISSMEGTLGIKS-YYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (550)
Q Consensus 264 ~i~~~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 340 (550)
++.+..+ ...+... .....+|.+.... +....+|..++|.++|+++| +..|+.+++.+|||+++++
T Consensus 229 ~i~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~p~~~~~~~Yda~~~~a 297 (387)
T 3i45_A 229 QVVSMLTGEPEYLNPL---KDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARW--------KEDPFVGSLVGYNTLTAMA 297 (387)
T ss_dssp EEEEEEEESHHHHGGG---GGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHH
T ss_pred eEEeecCCChHHHHHh---hhhccCceEEecccccCCCCHHHHHHHHHHHHHH--------CCCCCcHHHHHHHHHHHHH
Confidence 4433322 1111111 1134567665432 23345688999999999888 3467788999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEEEEEeCCCCCcc
Q 008863 341 EAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLPNFGFSK 409 (550)
Q Consensus 341 ~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~~~g~~~ 409 (550)
+|+++++.. +++.++++|++++|+|++|+++|++.+++....+.|.+++ +++...++.|.+..+...
T Consensus 298 ~Al~~ag~~--~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~~~~ 365 (387)
T 3i45_A 298 VAFEKAGGT--ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGGSV 365 (387)
T ss_dssp HHHHHHTSC--CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGGGG
T ss_pred HHHHHhCCC--CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCchhc
Confidence 999999875 9999999999999999999999997666666788888875 566788999997666543
|
| >3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=329.88 Aligned_cols=337 Identities=10% Similarity=0.059 Sum_probs=280.5
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCC-CCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~-~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
++|+||+++|+++ ..|.....|+++|++++|+++ .|++|+++++|++ +++..+.+.+++|+.+++|.+||||.+
T Consensus 13 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~~ 92 (419)
T 3h5l_A 13 DPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGYN 92 (419)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSCC
T ss_pred CCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEcccc
Confidence 6899999999995 457889999999999999997 4899999999987 699999999999998889999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCc-c-----cCCCCCeEEEEecCcHHhHHHHHHHHHHc--------CCeEEEE
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPL-S-----MSRRWPYLIRMASNDSEQMKCIADLARKY--------NWRRVAA 172 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~-----~~~~~~~~~~~~p~~~~~~~al~~~l~~~--------~w~~v~i 172 (550)
|..+.++++++...+||+|++++. +. . +...++|+||+.|++..++.+++++++++ +|++|++
T Consensus 93 s~~~~a~~~~~~~~~ip~i~~~~~---~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vai 169 (419)
T 3h5l_A 93 LENGTALHDVAADAGVIAMHANTV---AVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAI 169 (419)
T ss_dssp SSCSCHHHHHHHHHTCEEEECCCC---HHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEE
T ss_pred chhHHHhHHHHHHcCCeEEEcCcc---hhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 999999999999999999997543 32 1 23468999999999999999999999876 8999999
Q ss_pred EEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCC-HHHHHHHHHH
Q 008863 173 IYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS-LDMTIHLFTE 251 (550)
Q Consensus 173 i~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~-~~~~~~il~~ 251 (550)
|+++++|| ....+.+++.+++.| ++|+....++... .|+..++++|++.++|+|++ .+. ++.+..++++
T Consensus 170 l~~~~~~g--~~~~~~~~~~~~~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~ 239 (419)
T 3h5l_A 170 ITGPGIYS--VNIANAIRDGAGEYG-YDVSLFETVAIPV------SDWGPTLAKLRADPPAVIVV-THFYPQDQALFMNQ 239 (419)
T ss_dssp EECSSHHH--HHHHHHHHHHGGGGT-CEEEEEEECCSSC------SCCHHHHHHHHHSCCSEEEE-CCCCHHHHHHHHHH
T ss_pred EEcCcchh--HHHHHHHHHHHHHcC-CeEEEEecCCCCC------ccHHHHHHHHHhcCCCEEEE-ccccCchHHHHHHH
Confidence 99999999 999999999999999 9999888777643 68999999999999999999 754 6789999999
Q ss_pred HHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCC-chhh
Q 008863 252 ANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPS-IHAL 330 (550)
Q Consensus 252 a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~ 330 (550)
+++.|+. ..|+.+..+... ++. .......+|.+....+....++..++|.++|+++|. ..+. .+++
T Consensus 240 ~~~~g~~---~~~~~~~~~~~~-~~~-~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~a~ 306 (419)
T 3h5l_A 240 FMTDPTN---SLVYLQYGASLA-AFR-DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYG--------DLSSTASGC 306 (419)
T ss_dssp HTTSCCS---CEEEECSGGGSH-HHH-HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHC--------TTSCHHHHH
T ss_pred HHHcCCC---ceEEecCCCCcH-HHH-HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhC--------CCCCcchhH
Confidence 9999993 367776665421 111 112345678776654444455889999999999884 3443 5889
Q ss_pred HHhHHHHHHHHHHHhhccC-----CCCHHHHHHHHHhCcccccceeEEEeCCCCCC------------CCceEEEEeeCC
Q 008863 331 RAHDSIKIITEAIGRLNYN-----ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLN------------ADTLRIVNVVGK 393 (550)
Q Consensus 331 ~~yDav~~~a~Al~~~~~~-----~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~------------~~~~~i~~~~~~ 393 (550)
.+|||++++++|+.+++.+ +.++..++++|++++|.|++|+++|+++|++. ...+.|++++++
T Consensus 307 ~~Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q~q~g 386 (419)
T 3h5l_A 307 QTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDK 386 (419)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCCT
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccCCceEEEeeCC
Confidence 9999999999999988752 13678999999999999999999999988853 123557888877
Q ss_pred ee
Q 008863 394 KY 395 (550)
Q Consensus 394 ~~ 395 (550)
++
T Consensus 387 ~~ 388 (419)
T 3h5l_A 387 AE 388 (419)
T ss_dssp TS
T ss_pred ce
Confidence 77
|
| >3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=314.44 Aligned_cols=342 Identities=18% Similarity=0.244 Sum_probs=291.9
Q ss_pred CCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 32 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+.+++||+++|+++ ..|.....|+++|++++|+ -.|++++++++|+++++..+.+.+++++.+++|.+||||.++.
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~-i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~ 92 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT-VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASA 92 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh-cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCch
Confidence 46899999999994 4678899999999999997 4589999999999999999999999999876799999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEE-cCCCCCcchhH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYE-DNVYGGDSGKL 186 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~-~~~~g~~~~~~ 186 (550)
.+.++++++...++|+|++.++ ++.... .+|++||+.|++..++.++++++ +++||+++++||. +++|+ ....
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~~--~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~--~~~~ 167 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPAST--NPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYS--VGLS 167 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSCC--CGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHH--HHHH
T ss_pred hHHHHHHHHHhCCCeEEecCCC--CccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHH--HHHH
Confidence 9999999999999999999887 555433 56999999999999999999999 5689999999997 56788 8888
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+++.| +++.... ++... .|+...++++++.++++|++ .+....+..+++++++.|+.. .|+.
T Consensus 168 ~~~~~~~~~~G-~~v~~~~-~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 235 (366)
T 3td9_A 168 NFFINKFTELG-GQVKRVF-FRSGD------QDFSAQLSVAMSFNPDAIYI-TGYYPEIALISRQARQLGFTG---YILA 235 (366)
T ss_dssp HHHHHHHHHTT-CEEEEEE-ECTTC------CCCHHHHHHHHHTCCSEEEE-CSCHHHHHHHHHHHHHTTCCS---EEEE
T ss_pred HHHHHHHHHCC-CEEEEEE-eCCCC------ccHHHHHHHHHhcCCCEEEE-ccchhHHHHHHHHHHHcCCCc---eEEe
Confidence 99999999999 9998777 66533 57888999999999999999 999999999999999999965 5676
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecCCC--ChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHH
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDD--SSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (550)
++.+... .. ........+|.+....+.+.. .+..++|.++|+++| +..|+.+++.+|||++++++|++
T Consensus 236 ~~~~~~~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~~~~~yda~~~~~~al~ 305 (366)
T 3td9_A 236 GDGADAP-EL-IEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKY--------GKEPAALNALGYDAYMVLLDAIE 305 (366)
T ss_dssp CGGGCST-HH-HHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCcCCH-HH-HHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHH--------CCCCchhHHHHHHHHHHHHHHHH
Confidence 6655421 11 111234577888776654332 578999999999888 44578899999999999999999
Q ss_pred hhccCCCCHHHHHHHHHhCc-ccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCC
Q 008863 345 RLNYNISSPEMLLRQMLSSD-FSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPN 404 (550)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~-~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~ 404 (550)
+++.. +++.++++|++++ |+|++|+++|+++|++. ..+.|+++++++|+.|+.|++.
T Consensus 306 ~ag~~--~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 306 RAGSF--DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp HHTSC--CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGG
T ss_pred HhCCC--CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChh
Confidence 99875 9999999999997 99999999999989886 5699999999999999999863
|
| >4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=315.27 Aligned_cols=342 Identities=18% Similarity=0.225 Sum_probs=284.9
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
++||||+++|+|+ ..|.....|+++|++++|..-.|++|+++++|+++ +|..+...+.+|+.+++|.+|+||.+|.
T Consensus 4 d~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~S~ 83 (371)
T 4f06_A 4 DTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYFTP 83 (371)
T ss_dssp CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCSHH
T ss_pred CcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 6899999999993 56788999999999999932278999999999875 8999999999999988999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
.+.+++++++..++|+|+++++ ++.... ..||+||+.|++..++.+++++++..+|+++++|+++++|| ....+.
T Consensus 84 ~~~a~~~~~~~~~vp~i~~~a~--~~~~~~-~~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g--~~~~~~ 158 (371)
T 4f06_A 84 NAMAVAPLLQEAKVPMVVMNAA--TSSITE-KSPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPG--IDAETA 158 (371)
T ss_dssp HHHHHGGGHHHHTCCEEESSCC--CGGGGG-GCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred chHHHHHHHHhhcCCccccccc--cchhcc-cCCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccc--hhHHHH
Confidence 9999999999999999999988 666543 34899999999999999999999999999999999999999 999999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| ++++....++... .|+..++.+|++.++|+|++..........+++++.+.|+....+.++...
T Consensus 159 ~~~~~~~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 231 (371)
T 4f06_A 159 FKKTFEAEG-GKVVEAVRMPLST------TDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTG 231 (371)
T ss_dssp HHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEG
T ss_pred HHHHHHhcC-CceEEEEecCccc------ccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEec
Confidence 999999999 9999998888754 789999999999999999872445578888999999999987666666655
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh-
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL- 346 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~- 346 (550)
.......+ ........|++....+.. ..+|..++|.+.|++.|.. ...++.+++.+||+++++++|+++.
T Consensus 232 ~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~------~~~~~~~a~~~Yda~~~l~~Ai~~~a 303 (371)
T 4f06_A 232 DVVTEPDL--PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAK------LDEVTMTSVAAYDGARLIYKMIEATS 303 (371)
T ss_dssp GGGCGGGH--HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCC------GGGCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHH--HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCC------CCCccchHHHHHHHHHHHHHHHHHhc
Confidence 43322111 122345667776665543 3458888999988887642 2346778999999999999999865
Q ss_pred ccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee--CCeee
Q 008863 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV--GKKYK 396 (550)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~--~~~~~ 396 (550)
++. +++.++++|++++|.|++|+++||.+++.....+.|.+++ +++++
T Consensus 304 g~~--d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v 353 (371)
T 4f06_A 304 GKS--DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLI 353 (371)
T ss_dssp TSC--CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEE
T ss_pred CCC--CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEE
Confidence 444 8999999999999999999999998777655677788876 66654
|
| >3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=312.08 Aligned_cols=341 Identities=15% Similarity=0.151 Sum_probs=290.4
Q ss_pred cEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 34 VTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 34 ~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+|+||+++|+++ ..|.....|+++|++++|+++ +|++++++++|+++++..+.+.+++++. ++|.+||||.++.
T Consensus 2 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~ 80 (356)
T 3ipc_A 2 DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHANSG 80 (356)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSSHH
T ss_pred eEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCCcH
Confidence 799999999984 467789999999999999997 5899999999999999999999999998 7999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.+.++++++...++|+|++.++ ++......+|++||+.|++..++.++++++ +++||+++++|++++++| ....+
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~--~~~~~ 156 (356)
T 3ipc_A 81 VSIPASEVYAENGILEITPAAT--NPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYG--QGLAD 156 (356)
T ss_dssp HHHHHHHHHHTTTCEEEESSCC--CGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHH--HHHHH
T ss_pred HHHHHHHHHHhCCCeEEecCCC--CcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHH--HHHHH
Confidence 9999999999999999999888 666555667999999999999999999977 557999999999988888 88999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.....++.. ..++...++++++.++++|++ ++....+..+++++++.|+.. .|+.+
T Consensus 157 ~~~~~l~~~g-~~v~~~~~~~~~------~~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~~~~ 225 (356)
T 3ipc_A 157 ETKKAANAAG-VTEVMYEGVNVG------DKDFSALISKMKEAGVSIIYW-GGLHTEAGLIIRQAADQGLKA---KLVSG 225 (356)
T ss_dssp HHHHHHHHTT-CCCSEEEECCTT------CCCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHHTCCC---EEEEC
T ss_pred HHHHHHHHcC-CEEEEEEeeCCC------CCCHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHHHCCCCC---cEEEe
Confidence 9999999999 988776666553 257888999999999999999 999999999999999999975 56766
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
+.+... ... .......+|.+....+.+...|..++|.++|+++ . ..|+.+++.+|||++++++|+++++
T Consensus 226 ~~~~~~-~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--------~~p~~~~~~~yda~~~~~~al~~ag 294 (356)
T 3ipc_A 226 DGIVSN-ELA-SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--------FNPEAYTLYSYAAMQAIAGAAKAAG 294 (356)
T ss_dssp GGGCSH-HHH-HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--------CCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCH-HHH-HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--------CCcchhHHHHHHHHHHHHHHHHHhC
Confidence 554321 110 1122456787776665544558889998888876 2 2466789999999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC---CeeeEEEEEeC
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG---KKYKELDFWLP 403 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~---~~~~~vG~w~~ 403 (550)
.. +++.++++|++.+|+|++|+++|+++|++....+.|+++++ ++|+.+..|.+
T Consensus 295 ~~--~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~ 351 (356)
T 3ipc_A 295 SV--EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSH 351 (356)
T ss_dssp CC--CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC---
T ss_pred CC--CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEecccc
Confidence 75 99999999999999999999999999999878999999994 99999998875
|
| >3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=309.90 Aligned_cols=335 Identities=14% Similarity=0.196 Sum_probs=286.2
Q ss_pred CcEEEEEEEecCC---cc-chhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDANS---QM-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~-g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
++|+||+++|+++ .. |.....|+++|++++|..-.|++++++++|+++++..+.+.+++|+.+++|.+||||.++.
T Consensus 3 ~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s~ 82 (375)
T 3i09_A 3 DSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGTNSA 82 (375)
T ss_dssp SSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECSCHH
T ss_pred CCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCCCcH
Confidence 5899999999984 33 7789999999999994211689999999999999999999999999878999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.+.++++++...++|+|+++++ ++... ...+||+||+.|++..++.++++++.+++|+++++|++++++| ....+
T Consensus 83 ~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~~~ 158 (375)
T 3i09_A 83 TALSMNQVAAEKKKVYINIGAG--ADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFG--KALEK 158 (375)
T ss_dssp HHHHHHHHHHHHTCEEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred HHHHHHHHHHHcCceEEEeCCC--chhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHH--HHHHH
Confidence 9999999999999999999887 56643 4568999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| ++++....++... .|+...++++++.++++|++ .+....+..++++++++|+..+. .++..
T Consensus 159 ~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~-~i~g~ 229 (375)
T 3i09_A 159 NTADVVKANG-GKVLGEVRHPLSA------SDFSSFLLQAQSSKAQILGL-ANAGGDTVNAIKAAKEFGITKTM-KLAAL 229 (375)
T ss_dssp HHHHHHHHTT-CEEEEEEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCHHHHHHHHHHHHHTTGGGTC-EEEES
T ss_pred HHHHHHHHcC-CEEeeeeeCCCCC------ccHHHHHHHHHhCCCCEEEE-ecCchhHHHHHHHHHHcCCCcCc-eEEec
Confidence 9999999999 9998877776543 57889999999999999999 99999999999999999998875 44444
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
+.+...+... ..+..+|++....+....+|..++|.++|+++| +..|+.+++.+|||++++++|+++++
T Consensus 230 ~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~a~~~Yda~~~~~~Al~~ag 298 (375)
T 3i09_A 230 LMFINDVHAL---GLETTQGLVLTDSWYWNRDQASRQWAQRYFAKM--------KKMPSSLQAADYSSVTTYLKAVQAAG 298 (375)
T ss_dssp SCCHHHHHHH---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHhhh---ChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHH--------CCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 4443221111 124567887776665554688999999999888 44678899999999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCe
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKK 394 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~ 394 (550)
.. +++.|+++|++++|.|++|.++|+++|++. ..+.|+++++++
T Consensus 299 ~~--~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 299 ST--DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp SC--CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred CC--CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 76 999999999999999999999999988885 678899997643
|
| >4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=305.25 Aligned_cols=337 Identities=19% Similarity=0.254 Sum_probs=274.5
Q ss_pred CCCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCC
Q 008863 31 IEEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~ 105 (550)
++++||||+++|+|+ ..|....+|+++|+++||+.| .|++|+++++|++++|..+.+.+.+|+.++++.+|+||.
T Consensus 4 ~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~ 83 (353)
T 4gnr_A 4 EEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPA 83 (353)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCC
T ss_pred CCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEeccc
Confidence 457999999999993 567889999999999999998 589999999999999999999999999988999999999
Q ss_pred ChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-CCeEEEEEEEcC-CCCCcc
Q 008863 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-NWRRVAAIYEDN-VYGGDS 183 (550)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~w~~v~ii~~~~-~~g~~~ 183 (550)
+|..+.++++++...++|+|+++++ ++.+.. .++|+||+.|++..+..+++.++... ++++++++++++ +|| .
T Consensus 84 ~s~~~~a~~~~~~~~~vp~i~~~~~--~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg--~ 158 (353)
T 4gnr_A 84 TSGATAAAVANATKAGVPLISPSAT--QDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYA--K 158 (353)
T ss_dssp SHHHHHHHHHHHHHTTCCEEESSCC--CTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHH--H
T ss_pred cCcccceehhhhhccCcceEeeccc--cccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHH--H
Confidence 9999999999999999999999888 565543 45889999999999999999999765 555666666553 477 6
Q ss_pred hhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEE
Q 008863 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (550)
Q Consensus 184 ~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (550)
...+.+.+ ..| .+++....++... .|+..++.++++.++|+|++ .+...++..++++++++|+..+
T Consensus 159 ~~~~~~~~---~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~--- 224 (353)
T 4gnr_A 159 GIAKSFRE---SYK-GEIVADETFVAGD------TDFQAALTKMKGKDFDAIVV-PGYYNEAGKIVNQARGMGIDKP--- 224 (353)
T ss_dssp HHHHHHHH---HCC-SEEEEEEEECTTC------CCCHHHHHHHHTSCCSEEEC-CSCHHHHHHHHHHHHHTTCCSC---
T ss_pred HHHHHHHH---HcC-CEEEEEEeeCCCC------CCHHHHHHHHHhcCCCEEEE-ecCcHHHHHHHHHHHHcCCCCc---
Confidence 66555544 446 7888888887744 68999999999999999999 9999999999999999999763
Q ss_pred EEEeccchhhcccCChhHHhhcCceEEEEeecC--CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHH
Q 008863 264 WIVTNTVANALDSLNTTVISSMEGTLGIKSYYS--DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITE 341 (550)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~ 341 (550)
|+....+... ...........+|.+....+.. +.++..++|.++|+++| +..|+.+++++|||++++++
T Consensus 225 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~a~~~Yda~~~la~ 295 (353)
T 4gnr_A 225 IVGGDGFNGE-EFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY--------NEEPSTFAALAYDSVHLVAN 295 (353)
T ss_dssp EEECGGGCSH-HHHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHH
T ss_pred EEEecccccc-hhhhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHh--------CCCCChhHHHHHHHHHHHHH
Confidence 4554443321 1000111234566666654433 23478889999999988 45678899999999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHhC-cccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEE
Q 008863 342 AIGRLNYNISSPEMLLRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDF 400 (550)
Q Consensus 342 Al~~~~~~~~~~~~l~~~l~~~-~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~ 400 (550)
|++++. ++..++++|+.+ +|+|++|+++||++|++. ..+.++++++++|+.+..
T Consensus 296 Ai~~a~----~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~ 350 (353)
T 4gnr_A 296 AAKGAK----NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAEV 350 (353)
T ss_dssp HHTTCS----SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEEE
T ss_pred HHhcCC----CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEEE
Confidence 998653 788999999987 699999999999998885 678899999999887754
|
| >3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=310.09 Aligned_cols=337 Identities=14% Similarity=0.173 Sum_probs=284.2
Q ss_pred CCCcEEEEEEEecCC---cc-chhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 31 IEEVTKIGAIVDANS---QM-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~---~~-g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
.+++|+||+++|+++ .. |.....|+++|++++|..-.|++|+++++|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~ 82 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDVVN 82 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCCC
Confidence 346899999999984 34 77899999999999942216899999999999999999999999998789999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
+..+.++++++...++|+|+++++ ++.+. ...+||+||+.|++..++.++++++.+++|+++++|++++++| ...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~ 158 (379)
T 3n0w_A 83 SGTALAINNLVKDKKKLAFITAAA--ADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYG--DLM 158 (379)
T ss_dssp HHHHHHHHHHHHHHTCEEEECSCC--CTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHH
T ss_pred cHHHHHHHHHHHHcCceEEEcCCC--chhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchh--HHH
Confidence 999999999999999999999887 56544 3468999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
.+.+++.+++.| ++++....++... .|+...++++++.++++|++ .+....+..++++++++|+..+.+ ++
T Consensus 159 ~~~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~ 229 (379)
T 3n0w_A 159 NAAIRRELTAGG-GQIVGSVRFPFET------QDFSSYLLQAKASGAQLIVS-TSGGAANINIMKQAREFGLPSKTQ-KV 229 (379)
T ss_dssp HHHHHHHHHHHT-CEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEE-CCCHHHHHHHHHHHHHTTCSCSSC-EE
T ss_pred HHHHHHHHHHcC-CEEEEEEeCCCCC------CCHHHHHHHHHHCCCCEEEE-ecccchHHHHHHHHHHcCCCCCCc-EE
Confidence 999999999999 9998887776543 57888999999999999999 999999999999999999987643 34
Q ss_pred Eeccch-hhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHH
Q 008863 266 VTNTVA-NALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 266 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (550)
.+..+. ..+... .....+|++....+....+|..++|.++|+++| +..|+.+++.+|||++++++|++
T Consensus 230 ~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~~~~~Yda~~~~~~Al~ 298 (379)
T 3n0w_A 230 GGMIDILTDVKSA---GLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKM--------GKMPTNNQAGGYSAALQYLKAVN 298 (379)
T ss_dssp ECCBCCHHHHHHH---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EecccchHHHHhh---CHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHH--------CCCCChHHHHHHHHHHHHHHHHH
Confidence 443322 211111 124577887776665555688999999999888 44678899999999999999999
Q ss_pred hhccCCCCHHHHHHHHHhCccccccee-EEEeCCCCCCCCceEEEEeeCCe
Q 008863 345 RLNYNISSPEMLLRQMLSSDFSGLSGK-IRFKDGELLNADTLRIVNVVGKK 394 (550)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~~~G~tG~-i~f~~~g~~~~~~~~i~~~~~~~ 394 (550)
+++.. +++.|+++|++++|.++.|. ++|+++|++. ..+.|+++++++
T Consensus 299 ~ag~~--~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 299 AIGSK--DPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp HHTCC--CHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGG
T ss_pred HhCCC--CHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchh
Confidence 99876 99999999999999999884 9999988875 789999998643
|
| >3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=304.97 Aligned_cols=343 Identities=15% Similarity=0.178 Sum_probs=290.1
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++|+||+++|.++ ..+.....|+++|++++|+++ .|++++++++|+++++..+.+.+++++.+++|.+||||.++
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s 82 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSS 82 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSSH
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCCc
Confidence 5899999999984 357789999999999999987 58999999999999999999999999966899999999999
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
..+.++..++...++|+|++.++ ++...... |++||+.|++..++.++++++...||+++++|+.++.++ ....+
T Consensus 83 ~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~ 157 (358)
T 3hut_A 83 TVSMAAGSIYGKEGMPQLSPTAA--HPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWG--LSSAQ 157 (358)
T ss_dssp HHHHHHHHHHHHHTCCEEESSCC--CGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred HHHHHHHHHHHHCCCcEEecCCC--CcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHH--HHHHH
Confidence 99999999999999999999887 56554333 899999999999999999999888999999999888888 88999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.....++... .++...++++++.++++|++ .++...+..+++++++.|+.. .|+..
T Consensus 158 ~~~~~l~~~g-~~v~~~~~~~~~~------~~~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~~~g~~~---p~~~~ 226 (358)
T 3hut_A 158 AFRKAFELRG-GAVVVNEEVPPGN------RRFDDVIDEIEDEAPQAIYL-AMAYEDAAPFLRALRARGSAL---PVYGS 226 (358)
T ss_dssp HHHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ESCHHHHHHHHHHHHHTTCCC---CEEEC
T ss_pred HHHHHHHHcC-CEEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHHHcCCCC---cEEec
Confidence 9999999999 9988776665532 57778899998889999999 999989999999999999964 46766
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
+.+... ... .......+|++....+.+. .+|..++|.++|+++| +..|+.+++.+|||++++++|++++
T Consensus 227 ~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~p~~~~~~~yda~~~~~~al~~a 296 (358)
T 3hut_A 227 SALYSP-KFI-DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY--------GAIPTLFAAHGYDAVGIMLAAVGRA 296 (358)
T ss_dssp GGGCSH-HHH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCH-HHH-HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH--------CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 654321 111 1122457788877765443 4588999999999887 4467889999999999999999999
Q ss_pred ccCCCCHHH-HHHHHHhC-cccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeC
Q 008863 347 NYNISSPEM-LLRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLP 403 (550)
Q Consensus 347 ~~~~~~~~~-l~~~l~~~-~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~ 403 (550)
+.. ++.. ++++|+++ +|+|++|+++|+++|++....+.|+++++++|+.+....+
T Consensus 297 g~~--~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 297 GPE--VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp CTT--CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred CCC--ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 876 8888 99999999 9999999999999999856889999999999988876554
|
| >3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=314.79 Aligned_cols=352 Identities=14% Similarity=0.154 Sum_probs=293.3
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++|+||+++|+++ ..|.....|+++|++++|+++ .|++|+++++|+++++..+.+.+++|+.+++|.+||| .++
T Consensus 6 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~~s 84 (392)
T 3lkb_A 6 QQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-YAT 84 (392)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-CCH
T ss_pred CceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-CCc
Confidence 5899999999984 457789999999999999987 5899999999999999999999999998679999999 688
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcCCCCCcchhH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
..+.++.+++...+||+|+++++ ++..+...++++||+.|++..++.++++++.. ++|+++++|+++++|| ....
T Consensus 85 ~~~~~~~~~~~~~~iP~i~~~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g--~~~~ 160 (392)
T 3lkb_A 85 GANLQLKPLIQELRIPTIPASMH--IELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFG--RAPV 160 (392)
T ss_dssp HHHHHHHHHHHHHTCCEEESCCC--GGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHH--HTTH
T ss_pred HHHHHHHHHHHhCCceEEecccC--hhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchh--hhHH
Confidence 88888999999999999998766 44344456799999999999999999999976 6999999999988888 8899
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+++.| +++.....++... .|+...++++++.++++|++ .+....+..++++++++|+.. .|+.
T Consensus 161 ~~~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 229 (392)
T 3lkb_A 161 EDARKAARELG-LQIVDVQEVGSGN------LDNTALLKRFEQAGVEYVVH-QNVAGPVANILKDAKRLGLKM---RHLG 229 (392)
T ss_dssp HHHHHHHHHHT-CEEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCC---EEEE
T ss_pred HHHHHHHHHcC-CeEEEEEeeCCCC------cCHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCc---eEEE
Confidence 99999999999 9998877666532 57888999999999999999 899999999999999999965 5666
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCC----chhhHHhHHHHHHHH
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPS----IHALRAHDSIKIITE 341 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~yDav~~~a~ 341 (550)
++.+... .+. .......+|++....+.. ..++...+|.++|+++|. ..|. .+++.+|||++++++
T Consensus 230 ~~~~~~~-~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~~~~~yda~~~~~~ 299 (392)
T 3lkb_A 230 AHYTGGP-DLI-ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYG--------RPENFIESVNYTNGMLAAAIAVE 299 (392)
T ss_dssp CGGGCSH-HHH-HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTT--------CCHHHHTCHHHHHHHHHHHHHHH
T ss_pred ecCcccH-HHH-HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhC--------CCcccccchhHHHHHHHHHHHHH
Confidence 5543211 111 112245778887765533 234678889999988874 2333 337889999999999
Q ss_pred HHHhhcc--CCCCHHHHHHHHHhCc----cc-------ccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeCCCCCc
Q 008863 342 AIGRLNY--NISSPEMLLRQMLSSD----FS-------GLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (550)
Q Consensus 342 Al~~~~~--~~~~~~~l~~~l~~~~----~~-------G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~ 408 (550)
|+++++. .+.+++.++++|++++ |+ |++|+++|+++|++....+.++++++++|+.|+.|....++.
T Consensus 300 al~~ag~~~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 300 AIRRAQERFKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFTSALFR 379 (392)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBCCHHHH
T ss_pred HHHHhhccCCCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccchhHHH
Confidence 9999986 0139999999999997 88 999999999988876678999999999999999998766665
Q ss_pred cc
Q 008863 409 KT 410 (550)
Q Consensus 409 ~~ 410 (550)
..
T Consensus 380 ~~ 381 (392)
T 3lkb_A 380 KV 381 (392)
T ss_dssp HH
T ss_pred hh
Confidence 44
|
| >1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=302.22 Aligned_cols=337 Identities=15% Similarity=0.177 Sum_probs=282.4
Q ss_pred cEEEEEEEecCCc---cchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 34 VTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 34 ~i~IG~i~~~~~~---~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+|+||+++|.++. .+.....|+++|++++|+++ .|++|++++.|+++++..+.+.++++++ ++|.+||||.++.
T Consensus 2 ~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~s~ 80 (346)
T 1usg_A 2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVN-DGIKYVIGHLCSS 80 (346)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEECCSSHH
T ss_pred cEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHh-CCCCEEEcCCCcH
Confidence 6999999999743 46788999999999999997 5899999999999999999999999997 6999999999988
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH-HcCCeEEEEEEEcCCCCCcchhHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~-~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.+.++.+++...++|+|++.++ ++......+|++||+.|++..++.++++++. ++||+++++|+.++.++ ....+
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~--~~~~~ 156 (346)
T 1usg_A 81 STQPASDIYEDEGILMISPGAT--NPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYG--EGLAR 156 (346)
T ss_dssp HHHHHHHHHHHHTCEEEECCCC--CGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHH--HHHHH
T ss_pred HHHHHHHHHHHCCCeEEeeCCC--ChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchH--HHHHH
Confidence 8888889999999999999877 5554433478999999999999999999984 57999999999988888 88889
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.....++... .++...++++++.++++|++ .+....+..+++++++.|+.. .|+.+
T Consensus 157 ~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~~~g~~~---~~~~~ 225 (346)
T 1usg_A 157 SVQDGLKAAN-ANVVFFDGITAGE------KDFSALIARLKKENIDFVYY-GGYYPEMGQMLRQARSVGLKT---QFMGP 225 (346)
T ss_dssp HHHHHHHHTT-CCEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCC---EEEEC
T ss_pred HHHHHHHHcC-CEEEEEeccCCCC------cCHHHHHHHHHhcCCCEEEE-cCcchHHHHHHHHHHHcCCCC---eEEec
Confidence 9999999999 9988766565432 46677889998889999999 888888999999999999975 47777
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
+.|... .+. .......+|++...++....+|..++|.++|+++| +..++.+++.+|||++++++|+++++
T Consensus 226 ~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~~~~~~~~~yda~~~~~~al~~~g 295 (346)
T 1usg_A 226 EGVGNA-SLS-NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK--------KDPSGPYVWITYAAVQSLATALERTG 295 (346)
T ss_dssp GGGCCT-THH-HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT--------CCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcH-HHH-HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh--------CCCCchhHHHHHHHHHHHHHHHHHhC
Confidence 665421 111 11224567887766553334578889998888776 33567789999999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeEE
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKEL 398 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~v 398 (550)
.. +++.++++|++.+|+|++|+++|+++|++....|.+++++ +++|+.+
T Consensus 296 ~~--~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 296 SD--EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp CC--CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred CC--CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 76 8999999999999999999999999999877789999999 8887754
|
| >4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=303.23 Aligned_cols=344 Identities=13% Similarity=0.180 Sum_probs=292.5
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
++|+||+++|.++ ..|.....|+++|++++|..-+|++++++++|+++++..+.+.+.+++.+++|.+||||.++..
T Consensus 15 ~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~ 94 (375)
T 4evq_A 15 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVHSGV 94 (375)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECSSHHH
T ss_pred CCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCCccHH
Confidence 6899999999984 4577889999999999982117899999999999999999999999998679999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
+.++.+++...++|+|++.++ ++... ...+|++||+.|++..++.++++++.++||+++++|++++.+| ....+.
T Consensus 95 ~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~~ 170 (375)
T 4evq_A 95 AMAMVKIAREDGIPTIVPNAG--ADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAG--EEMVSG 170 (375)
T ss_dssp HHHHHHHHHHHCCCEEESSCC--CGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred HHHHHHHHHHcCceEEecCCC--ChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHH--HHHHHH
Confidence 999999999999999999987 56544 3458999999999999999999999999999999999988888 888999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| +++.....++... .++...++++++.++++|++ .++...+..+++++++.|+.. .|+.++
T Consensus 171 ~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dai~~-~~~~~~a~~~~~~~~~~g~~v---p~~~~~ 239 (375)
T 4evq_A 171 FKKSFTAGK-GEVVKDITIAFPD------VEFQSALAEIASLKPDCVYA-FFSGGGALKFIKDYAAANLGI---PLWGPG 239 (375)
T ss_dssp HHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ECCTHHHHHHHHHHHHTTCCC---CEEEEG
T ss_pred HHHHHHHcC-CeEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCc---eEEecC
Confidence 999999999 9988776666533 57788899998889999999 888999999999999999874 345443
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
|.. .... .......+|++....+... .+|..++|.++|+++| +..|+.+++.+|||++++++|+++++
T Consensus 240 -~~~-~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~p~~~~~~~yda~~~~~~al~~~g 308 (375)
T 4evq_A 240 -FLT-DGVE-AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY--------KIPPDVFAVQGWDAGQLLDAGVKAVG 308 (375)
T ss_dssp -GGT-TTTH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cCC-HHHH-HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH--------CCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 421 1111 1223567888877665443 4588999999999888 45678899999999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEEEeC
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLP 403 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~w~~ 403 (550)
..+.+++.|+++|++++|+|++|+++|+++|++. ..+.|+++++++|+.|+.+.+
T Consensus 309 ~~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 309 GDVAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp TCTTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred CCCCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 6335999999999999999999999999988885 689999999999999998865
|
| >4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=303.30 Aligned_cols=345 Identities=22% Similarity=0.303 Sum_probs=289.6
Q ss_pred CCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 32 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
.++|+||+++|+++ ..|.....|+++|++++|..-+|++|+++++|+++++..+.+.+++++.+++|.+||||.++.
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~s~ 83 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITP 83 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCccH
Confidence 36899999999984 347789999999999998522689999999999999999999999999878999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
.+.++++++...++|+|+++++ ++..... +|++||+.|++..++.++++++.++||+++++|++++.+| ....+.
T Consensus 84 ~~~~~~~~~~~~~ip~i~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g--~~~~~~ 158 (368)
T 4eyg_A 84 AALAAAPLATQAKVPEIVMAAG--TSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPG--NDALAF 158 (368)
T ss_dssp HHHHHHHHHHHHTCCEEESSCC--CGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred HHHHHHHHHHhCCceEEeccCC--ChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHh--HHHHHH
Confidence 9999999999999999999887 5554433 7999999999999999999999999999999999988888 888999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| +++.....++... .|+...++++++.++++|++ .+....+..++++++++|+..+++.|+.++
T Consensus 159 ~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 159 FKERFTAGG-GEIVEEIKVPLAN------PDFAPFLQRMKDAKPDAMFV-FVPAGQGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp HHHHHHHTT-CEEEEEEEECSSS------CCCHHHHHHHHHHCCSEEEE-ECCTTCHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred HHHHHHHcC-CEEEEEEeCCCCC------CcHHHHHHHHHhcCCCEEEE-eccchHHHHHHHHHHHcCCCcCCceEEecC
Confidence 999999999 9998877776533 57888999999999999999 888889999999999999987666788776
Q ss_pred cchh--hcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHh
Q 008863 269 TVAN--ALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (550)
Q Consensus 269 ~~~~--~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (550)
.+.. ...... ...+|++...++.. ..+|..++|.++| ++|. +..|+.+++.+|||++++++|+++
T Consensus 231 ~~~~~~~~~~~g----~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~-------~~~p~~~~~~~yda~~~~~~al~~ 298 (368)
T 4eyg_A 231 DVMDDDLLNSMG----DAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEF-------GQRPGFMAVGGYDGIHLVFEALKK 298 (368)
T ss_dssp TTTCHHHHTTCC----GGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHH-------SSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHhhh----hhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhC-------CCCCChHHHHHHHHHHHHHHHHHH
Confidence 4321 222211 44678877665543 2458899999999 8774 235678899999999999999999
Q ss_pred hccCCCCHHHHHHHHHhCcccccceeEEEe-CCCCCCCCceEEEEee--CCeeeEE--EEEeC
Q 008863 346 LNYNISSPEMLLRQMLSSDFSGLSGKIRFK-DGELLNADTLRIVNVV--GKKYKEL--DFWLP 403 (550)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~-~~g~~~~~~~~i~~~~--~~~~~~v--G~w~~ 403 (550)
++.. .+++.|+++|++++|+|++|+++|+ ++|+. ...+.|.+++ +++|+.+ +.|.+
T Consensus 299 ~g~~-~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 299 TGGK-ADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp TTTC-CSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hCCC-CCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEeecccc
Confidence 9742 4899999999999999999999999 56665 4788899988 8888665 55543
|
| >3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=305.14 Aligned_cols=330 Identities=15% Similarity=0.177 Sum_probs=269.0
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhc-CC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNS-DS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~-~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
++|+||+++|+++ ..|.....|+++|++++|+ .+ .|++|+++++|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 82 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 82 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCCC
Confidence 5799999999994 4578899999999999998 45 6899999999999999999999999998789999999999
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCccc-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSM-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
|..+.+++++++..++|+|++.++ ++.+. ...+||+||+.|++..+..+++.++++++| ++++|+++++|| ...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g--~~~ 157 (374)
T 3n0x_A 83 SAAALADLPVAEENKKILIVEPAV--ADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFG--RDG 157 (374)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHH--HHH
T ss_pred cHHHHHHHHHHHHcCccEEEcCCC--chhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHH--HHH
Confidence 999999999999999999998776 56544 445799999999999999999977788888 799999999999 999
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC-----CeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-----SRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~-----~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+++.+++.| ++++....++... .|+..++++|++.+ +++|++ .+..... .+.++.++++...
T Consensus 158 ~~~~~~~~~~~G-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~~~~~~d~v~~-~~~g~~~--~~~~~~~~~~~~~ 227 (374)
T 3n0x_A 158 VAAFKEALAKTG-ATLATEEYVPTTT------TDFTAVGQRLFDALKDKPGKKIIWV-IWAGGGD--PLTKLQDMDPKRY 227 (374)
T ss_dssp HHHHHHHHTTTT-CEEEEEEEECTTC------CCCHHHHHHHHHHHTTCSSEEEEEE-CCCSSSC--HHHHHHHTCGGGG
T ss_pred HHHHHHHHHHcC-CEEeeeecCCCCC------ccHHHHHHHHHhcCCCCCCCCEEEE-EecCCcH--HHHHHHHcchhhc
Confidence 999999999999 9999888777643 68899999999888 999998 6333211 2455666666554
Q ss_pred CEEEEEeccchhhcccCChhHHhhcCceEEEEeecC--CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHH
Q 008863 261 DSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYS--DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKI 338 (550)
Q Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~ 338 (550)
++.++.......... ......|..+...+.. ..+|..++|.++|+++| +..|+.+++.+|||+++
T Consensus 228 g~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~--------g~~p~~~a~~~Yda~~~ 294 (374)
T 3n0x_A 228 GIELSTGGNILPALA-----AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF--------NAPPDFFTAGGFSAAMA 294 (374)
T ss_dssp TEEEEECCCCTTGGG-----GGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHH
T ss_pred CCeeeeccccchhhh-----hhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH--------CCCCChhHHHHHHHHHH
Confidence 555554333211111 1133456655544322 23578899999999888 45678899999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC
Q 008863 339 ITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG 392 (550)
Q Consensus 339 ~a~Al~~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~ 392 (550)
+++|+++++.. ++..|+++|++++|+|++|+++|+..+++....+.|++++.
T Consensus 295 l~~Al~~ag~~--~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 295 VVTAVQKAKST--DTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp HHHHHHHHTSC--CHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred HHHHHHHhCCC--CHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 99999999875 99999999999999999999999965555567899999975
|
| >3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=302.98 Aligned_cols=342 Identities=14% Similarity=0.158 Sum_probs=285.1
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC----CCc--EEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS----RNH--KLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG 103 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~----~~~--~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG 103 (550)
++|+||+++|+++ ..|.....|+++|++++|+++ +|+ +|+++++|+++++..+.+.+++|+.+++|.+|||
T Consensus 3 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 3 LTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 5899999999984 457788999999999999986 567 9999999999999999999999996689999999
Q ss_pred CCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEE-cCCCCC
Q 008863 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYE-DNVYGG 181 (550)
Q Consensus 104 ~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~-~~~~g~ 181 (550)
.++..+.++++++...+||+|+++++ ++ .. .+|++||+.|++..++.++++++.+ +||++|++|++ ++++|
T Consensus 83 -~~s~~~~a~~~~~~~~~iP~i~~~~~--~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g- 155 (391)
T 3eaf_A 83 -WGTADTEKLSDQVDTDKITYISASYS--AK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYS- 155 (391)
T ss_dssp -CCHHHHHHHHHHHHHHTCEEEESCCC--GG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHH-
T ss_pred -cCcHHHHHHHHHHhhcCCeEEecccc--hh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhH-
Confidence 68888889999999999999998766 33 32 6799999999999999999999977 69999999999 88898
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHH--hhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK--VQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~--i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
....+.+++.+++.| +++.....++.. ..|+...+++ +++.++++|++ .++...+..++++++++|+..
T Consensus 156 -~~~~~~~~~~l~~~G-~~v~~~~~~~~~------~~d~~~~~~~~~l~~~~~dav~~-~~~~~~~~~~~~~~~~~g~~~ 226 (391)
T 3eaf_A 156 -RSPIGAIKKAAPSLG-LQVVGDYDLPLR------ATEADAERIAREMLAADPDYVWC-GNTISSCSLLGRAMAKVGLDA 226 (391)
T ss_dssp -HTTHHHHHHHTGGGT-EEEEEEEECCTT------CCHHHHHHHHHHHHTTCCSEEEE-CSCHHHHHHHHHHHHHHTCCC
T ss_pred -HHHHHHHHHHHHHcC-CceeeeeccCCC------CcCHHHHHHHHHHHHcCCCEEEE-ecCcHHHHHHHHHHHHCCCCc
Confidence 999999999999999 999887777653 3689999999 99999999999 999999999999999999965
Q ss_pred CCEEEEEeccchhhcccCChhHHhhcCc-eEEEEeec--C--CCChhHHHHHHHHHHHhhccCCCCCCCCC--CchhhHH
Q 008863 260 KDSVWIVTNTVANALDSLNTTVISSMEG-TLGIKSYY--S--DDSSPYKEFSALFRRNFTSEYPEEDHFHP--SIHALRA 332 (550)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 332 (550)
.|+.++. ....... .......+| .+....+. + ...|. .+|.++|+++|.. ..| +.+++.+
T Consensus 227 ---~~~~~~~-~~~~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~-------~~p~~~~~~~~~ 293 (391)
T 3eaf_A 227 ---FLLTNVW-GFDERSP-QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGV-------SEDQINLRVVQG 293 (391)
T ss_dssp ---EEEECGG-GCSTTHH-HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTC-------CGGGCCHHHHHH
T ss_pred ---eEEEecc-CCCHHHH-HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCC-------CCcccccHHHHH
Confidence 4555433 2111111 112245788 76665554 1 23344 6788989888741 233 4788999
Q ss_pred hHHHHHHHHHHHhh---c--cCCCCHHHHHHHHHhCccc--ccce-eEEEeCCCCCCCCceEEEEe-eCCeeeEEEEEeC
Q 008863 333 HDSIKIITEAIGRL---N--YNISSPEMLLRQMLSSDFS--GLSG-KIRFKDGELLNADTLRIVNV-VGKKYKELDFWLP 403 (550)
Q Consensus 333 yDav~~~a~Al~~~---~--~~~~~~~~l~~~l~~~~~~--G~tG-~i~f~~~g~~~~~~~~i~~~-~~~~~~~vG~w~~ 403 (550)
|||++++++|++++ + .. +++.++++|++.+|+ |++| +++|++++++....+.|+++ ++++|+.++.|..
T Consensus 294 yda~~~l~~Al~~a~~~g~~~~--~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~ 371 (391)
T 3eaf_A 294 FVNVWLLIKAIESVTSQDLQER--GGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEA 371 (391)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHH--THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecC
Confidence 99999999999998 6 54 899999999998898 9999 99999877666789999999 8999999999985
Q ss_pred CC
Q 008863 404 NF 405 (550)
Q Consensus 404 ~~ 405 (550)
..
T Consensus 372 ~~ 373 (391)
T 3eaf_A 372 PS 373 (391)
T ss_dssp CT
T ss_pred cc
Confidence 43
|
| >3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=297.40 Aligned_cols=340 Identities=10% Similarity=0.104 Sum_probs=283.4
Q ss_pred CCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
+++|+||+++|+++ ..|.....|+++|++++|+++ .|++++++++|+++++..+.+.+++++.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 82 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVG 82 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 46899999999973 457788999999999999998 5899999999999999999999999998779999999999
Q ss_pred hHHHHHHHH--hhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcch
Q 008863 107 WEETAVVAE--IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 107 s~~~~~v~~--~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~ 184 (550)
+..+.++++ ++...+||+|++.++ ++.+.. +|++||+.|++..++.++++++.++||++|++|++++++| ..
T Consensus 83 s~~~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g--~~ 156 (364)
T 3lop_A 83 TANVEALMREGVLAEARLPLVGPATG--ASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALG--KE 156 (364)
T ss_dssp HHHHHHHHHTTHHHHHTCCEESCSCC--CGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHH--HH
T ss_pred CHHHHhhCchhhHHhcCCcEEEcccC--cHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhh--HH
Confidence 999999999 999999999999887 555443 7999999999999999999999999999999999998898 88
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
..+.+++.+++.| +++.....++.. ..|+...++++++.++++|++ .++...+..++++++++|+.. .|
T Consensus 157 ~~~~~~~~~~~~G-~~v~~~~~~~~~------~~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~ 225 (364)
T 3lop_A 157 AITGVERTLKAHA-LAITAMASYPRN------TANVGPAVDKLLAADVQAIFL-GATAEPAAQFVRQYRARGGEA---QL 225 (364)
T ss_dssp HHHHHHHHHHTTT-CCCSEEEEECTT------SCCCHHHHHHHHHSCCSEEEE-ESCHHHHHHHHHHHHHTTCCC---EE
T ss_pred HHHHHHHHHHHcC-CcEEEEEEecCC------CccHHHHHHHHHhCCCCEEEE-ecCcHHHHHHHHHHHHcCCCC---eE
Confidence 9999999999999 998776666653 257888999999999999999 999999999999999999976 36
Q ss_pred EEeccchhhcccCChhHH-hhcCceEEEEee---cCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHH
Q 008863 265 IVTNTVANALDSLNTTVI-SSMEGTLGIKSY---YSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (550)
Q Consensus 265 i~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 340 (550)
+..+.+... ... .... ...+|++....+ .....|..++|.++|+++|.. ...|+.+++.+|||+++++
T Consensus 226 i~~~~~~~~-~~~-~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~p~~~a~~~yda~~~~~ 297 (364)
T 3lop_A 226 LGLSSIDPG-ILQ-KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAK------DVDLSFRAVEGFVAAKVLA 297 (364)
T ss_dssp EECTTSCHH-HHH-HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCT------TCCCCHHHHHHHHHHHHHH
T ss_pred EEeccCChH-HHH-HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCC------CCCCChHHHHHHHHHHHHH
Confidence 665554321 111 1122 456777765422 123458889999999887632 1167888999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHhC-cccc-cceeEEEeCCCCCCCCceEEEEeeCCeeeE
Q 008863 341 EAIGRLNYNISSPEMLLRQMLSS-DFSG-LSGKIRFKDGELLNADTLRIVNVVGKKYKE 397 (550)
Q Consensus 341 ~Al~~~~~~~~~~~~l~~~l~~~-~~~G-~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~ 397 (550)
+|+++++.. .+++.|+++|+++ +|+| .+|+++|++++++......|.+++++++.+
T Consensus 298 ~al~~ag~~-~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~ 355 (364)
T 3lop_A 298 EAIRRAGPK-PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVI 355 (364)
T ss_dssp HHHHHHCSS-CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEE
T ss_pred HHHHHhCCC-CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCccc
Confidence 999999742 4999999999999 7999 999999998887766788888888766543
|
| >3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=296.86 Aligned_cols=338 Identities=18% Similarity=0.252 Sum_probs=275.8
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
++|+||+++|+++ ..|.....|+++|++++| |+++++++.|+++++..+.+.+++++.+++|.+||||.++..
T Consensus 26 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~----G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~ 101 (386)
T 3sg0_A 26 AEIKIGITMSASGPGAALGQPQSKTVAALPKEIG----GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPV 101 (386)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET----TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHHH
T ss_pred CceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC----CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCchh
Confidence 5899999999984 356788899999999984 789999999999999999999999998779999999999999
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCccc--CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSM--SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
+.++.+++...++|+|++.++ ++... ...+|++||+.|++..++.++++++.++||+++++|++++.+| ....+
T Consensus 102 ~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~ 177 (386)
T 3sg0_A 102 SLPLIDIAAEAKTPLMTMAAA--AILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYG--EGYYK 177 (386)
T ss_dssp HHHHHHHHHHTTCCEEECCCC--GGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred HHHHHHHHHhcCCeEEEecCC--CccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHH--HHHHH
Confidence 999999999999999999887 55544 4567999999999999999999999999999999999998898 99999
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
.+++.+++.| +++.....++... .++...++++++.++++|++ .++...+..+++++++.|+.. .++..
T Consensus 178 ~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~~~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~---~~~~~ 246 (386)
T 3sg0_A 178 VLAAAAPKLG-FELTTHEVYARSD------ASVTGQVLKIIATKPDAVFI-ASAGTPAVLPQKALRERGFKG---AIYQT 246 (386)
T ss_dssp HHHHHHHHHT-CEECCCEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCSGGGHHHHHHHHHTTCCS---EEECC
T ss_pred HHHHHHHHcC-CEEEEEEeeCCCC------CcHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCC---cEEec
Confidence 9999999999 9987666565532 57888899999999999999 888888999999999999975 45655
Q ss_pred ccchhhcccCChhHHhhcCceEEEEeec------CCCC---hhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHH
Q 008863 268 NTVANALDSLNTTVISSMEGTLGIKSYY------SDDS---SPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKI 338 (550)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~ 338 (550)
..+... ... .......+|.+....+. +..+ +..++|.++|+++|.. ..|+.+++.+||++++
T Consensus 247 ~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~p~~~~~~~yda~~~ 317 (386)
T 3sg0_A 247 HGVATE-EFI-KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-------AAPTIFGVHLWDSMTL 317 (386)
T ss_dssp GGGCSH-HHH-HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-------CCCCHHHHHHHHHHHH
T ss_pred cccCCH-HHH-HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-------CCCChhHHHHHHHHHH
Confidence 544321 111 11224567877655321 2222 3467888888887742 2567889999999999
Q ss_pred HHHHHHhhccC-----CCCHHHHHHHHHhC-cccccceeEEEeCCCCC--CCCceEEEEeeCCeeeEE
Q 008863 339 ITEAIGRLNYN-----ISSPEMLLRQMLSS-DFSGLSGKIRFKDGELL--NADTLRIVNVVGKKYKEL 398 (550)
Q Consensus 339 ~a~Al~~~~~~-----~~~~~~l~~~l~~~-~~~G~tG~i~f~~~g~~--~~~~~~i~~~~~~~~~~v 398 (550)
+++|++++... +.+++.++++|+++ +|+|++|+++|+.++++ .+..+.|+++++++|+.+
T Consensus 318 ~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 318 VENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRLK 385 (386)
T ss_dssp HHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred HHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEec
Confidence 99999998421 12478999999999 89999999999876544 235689999999988754
|
| >1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=280.89 Aligned_cols=345 Identities=13% Similarity=0.147 Sum_probs=277.5
Q ss_pred CCcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 32 ~~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
.++++||+++|.++ ..+.....|+++|++++|+++ .|++|++++.|+++++..+.+.+++++.+++|.+|||+.+
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 84 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYM 84 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCc
Confidence 46899999999874 356788899999999999987 4889999999999999999999999997679999999998
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
+..+.++.+++...++|+|++... .. ...++++|++.+++..++.++++++.+.+|+++++|+.++.++ ....
T Consensus 85 s~~~~~~~~~~~~~~iP~v~~~~~--~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~ 157 (385)
T 1pea_A 85 SHTRKAVMPVVERADALLCYPTPY--EG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYP--RESN 157 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSCC--CC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHH--HHHH
T ss_pred hHHHHHHHHHHHhcCceEEECCcc--cC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHH--HHHH
Confidence 888888889999999999998764 21 1235789999999999999999999999999999999987788 8888
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+++.| +++.....++... ...++...++++++.++++|++ .++...+..++++++++|+.++.+.++.
T Consensus 158 ~~~~~~l~~~G-~~v~~~~~~~~~~----~~~d~~~~~~~l~~~~pdaI~~-~~~~~~a~~~~~~~~~~G~~~~~~~~~~ 231 (385)
T 1pea_A 158 HVMRHLYRQHG-GTVLEEIYIPLYP----SDDDLQRAVERIYQARADVVFS-TVVGTGTAELYRAIARRYGDGRRPPIAS 231 (385)
T ss_dssp HHHHHHHHHTT-CEEEEEEEECSSC----CHHHHHHHHHHHHHHTCSEEEE-ECCTHHHHHHHHHHHHHHCSSCCCCEEE
T ss_pred HHHHHHHHHcC-CEEEEEEeecCCC----CcchHHHHHHHHHHCCCCEEEE-ecccccHHHHHHHHHHcCCCcCCceEEe
Confidence 99999999999 9987655454311 3478889999998889999998 8878889999999999999865444444
Q ss_pred eccchh-hcccCChhHHhhcCceEEEEeecC-CCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHH
Q 008863 267 TNTVAN-ALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (550)
Q Consensus 267 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (550)
. .|.. .+.... .+..+|++...++.. ..+|..++|.++|+++|.. ...++.+++.+|||++++++|++
T Consensus 232 ~-~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~------~~~~~~~~~~~yda~~~~~~Al~ 301 (385)
T 1pea_A 232 L-TTSEAEVAKME---SDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE------NATITAWAEAAYWQTLLLGRAAQ 301 (385)
T ss_dssp S-SCCHHHHTTSC---HHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCT------TCCCCHHHHHHHHHHHHHHHHHH
T ss_pred c-ccchHHHHhcC---chhhCCeEEecccccccCCHHHHHHHHHHHHHhCC------CCCCChHHHHHHHHHHHHHHHHH
Confidence 3 3332 111111 135678877765543 3457788888888776532 12467789999999999999999
Q ss_pred hhccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEe-eCCeeeEEEEE
Q 008863 345 RLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV-VGKKYKELDFW 401 (550)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~-~~~~~~~vG~w 401 (550)
+++.. +++.++++|++++|+|++|+++|+++++.....+.|.++ ++++|+.|...
T Consensus 302 ~ag~~--~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 302 AAGNW--RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp HHTSC--CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred HhCCC--CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 99876 899999999999999999999999865554578889999 78888887654
|
| >3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=235.58 Aligned_cols=313 Identities=13% Similarity=0.088 Sum_probs=235.4
Q ss_pred EEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 35 TKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 35 i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
+|||+++|+|+ ..|...+.|+++|++ +.+++++++|++++|..+ +.+++.+++|.+||||.+|..+.
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~-------g~~i~l~~~D~~~~~~~a---a~~~~~~~~v~~iiGp~~s~~~~ 72 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG-------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQNLD 72 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT-------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHHHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC-------CCCceEEEEeCCCCHHHH---HHHHHHHcCCeEEEEccccccch
Confidence 79999999993 567888899998863 567889999999998655 34555568999999999988877
Q ss_pred HHHHh-hccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 VVAEI-ASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~-~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
+++.. +....+|+++.+++ +.. ...+++|++.+++..++.++++++...+++++++|+++++|| ....+.|+
T Consensus 73 a~~~~~~~~~~v~~~~~~~~---~~~--~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg--~~~~~~f~ 145 (327)
T 3ckm_A 73 VILADPAQIQGMDVLALNAT---PNS--RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLG--QRVGNAFN 145 (327)
T ss_dssp HHHHCGGGGTTCEEEESCCC---TTC--CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHH--HHHHHHHH
T ss_pred hhHHHHHhccCceEeccCcC---ccc--ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHH--HHHHHHHH
Confidence 76654 45566777665544 222 234789999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (550)
+.+++.| ++|+....++.. +....+.+++..++|+|++ .....++..+++++++.|+.. .++.++.+
T Consensus 146 ~~~~~~G-g~vv~~~~~~~~--------~~~~~~~~~~~~~~dai~~-~~~~~~~~~i~~q~~~~g~~~---~~~~~~~~ 212 (327)
T 3ckm_A 146 VRWQQLA-GTDANIRYYNLP--------ADVTYFVQENNSNTTALYA-VASPTELAEMKGYLTNIVPNL---AIYASSRA 212 (327)
T ss_dssp HHHHHHH-SSCCEEEEESST--------THHHHHHHHSCTTCCEEEE-CCCHHHHHHHHHHHTTTCTTC---EEEECGGG
T ss_pred HHHHHCC-CeEEEEEECCCC--------chhhHHHHHhccCCcEEEE-EcCHHHHHHHHHHHHhhhccC---CEEeeecc
Confidence 9999999 999888877653 2335567788889999999 999999999999999999865 55665554
Q ss_pred hhhcccCChhHHhhcCceEEEEe-ec-CCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhcc
Q 008863 271 ANALDSLNTTVISSMEGTLGIKS-YY-SDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (550)
Q Consensus 271 ~~~~~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (550)
...............+|.+.... +. ....+....|.++|++.|. +....+++|||+.++.++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----------~~~~~AlgyDA~~l~~~l~~~~-- 280 (327)
T 3ckm_A 213 SASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----------LMRLYAMGADAWLLINQFNELR-- 280 (327)
T ss_dssp CCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHTHHHHH--
T ss_pred ccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----------CCchHHHHHHHHHHHHHHHHhc--
Confidence 32211111222234566665543 22 2334667666666554442 2236788999998876544322
Q ss_pred CCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEEEE
Q 008863 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDF 400 (550)
Q Consensus 349 ~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~vG~ 400 (550)
.+....|.|+||.++||++|+. ...+.+.+++++++++|..
T Consensus 281 ----------~~~~~~f~G~tG~i~fd~~G~~-~r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 281 ----------QVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp ----------HSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEEEECC-
T ss_pred ----------CCCCCCceeceEEEEECCCCCC-ccccEEEEEECCEEEEccc
Confidence 2334679999999999999975 4788899999999998864
|
| >1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-13 Score=129.43 Aligned_cols=91 Identities=14% Similarity=0.221 Sum_probs=70.9
Q ss_pred CCeEecccCcccccccEEEecCCCCCC-C---------------------------CCCCcccccchHHHHHHHHHhCCC
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGN-S---------------------------NDKNLRYDGFSIELFRLVVDHLNY 504 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~-~---------------------------~~~~~~~~GfciDll~~la~~l~f 504 (550)
++|||++.++ +||||.+.+.+.+. . -+.+.+++|||+||+++|++.+||
T Consensus 4 ~~l~v~t~~~---~P~v~~~~~~~~~~c~~~~~~~~~~~~~~l~vg~~~~~~P~~~~~~~g~~~G~~vDll~~ia~~lg~ 80 (292)
T 1pb7_A 4 TRLKIVTIHQ---EPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNF 80 (292)
T ss_dssp CCEEEEECCB---TTTBEEEECCTTSSCCCCBCTTSCBCCCEEEEEEC--------CEEEEEEESHHHHHHHHHHHHHTC
T ss_pred cEEEEEEEee---CCeEEEecCCCCCccccccccccccccceeecccCCCCCCccccccccCcceeHHHHHHHHHHHcCc
Confidence 5677777655 79999987542110 0 001235899999999999999999
Q ss_pred CCCeEEEec-----------C----CChHHHHHhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 505 DLPYEFVPH-----------D----GVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 505 ~~~~~~~~~-----------~----g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
+ |+++++ + +.|++|+++|.+|++||+++++++|++|++++..
T Consensus 81 ~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~f 137 (292)
T 1pb7_A 81 T--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEF 137 (292)
T ss_dssp C--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECSSCBCCHHHHTTEEE
T ss_pred e--EEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEEeeeEecHHHhcceEe
Confidence 9 666664 2 4899999999999999999999999999987753
|
| >2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-12 Score=123.31 Aligned_cols=60 Identities=12% Similarity=0.317 Sum_probs=53.7
Q ss_pred ccccchHHHHHHHHHhCCCCCCeEEEec---------CCChHHHHHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 486 RYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 486 ~~~GfciDll~~la~~l~f~~~~~~~~~---------~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
+++|||+||+++|++.+||+ |+++++ ++.|++|+++|.+|++||+++++++|.+|++.+.
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~ 135 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVID 135 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSE
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEE
Confidence 37899999999999999999 666543 5689999999999999999999999999998764
|
| >2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.5e-12 Score=118.50 Aligned_cols=61 Identities=11% Similarity=0.297 Sum_probs=54.8
Q ss_pred ccccchHHHHHHHHHhCCCCCCeEEEec---------CCChHHHHHhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 486 RYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 486 ~~~GfciDll~~la~~l~f~~~~~~~~~---------~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
+++|||+||+++|++.+||+ |+++++ ++.|++++++|.+|++|++++++++|.+|++.+..
T Consensus 56 ~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~f 125 (284)
T 2a5s_A 56 CCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDF 125 (284)
T ss_dssp EEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEE
T ss_pred eeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEe
Confidence 78999999999999999999 666543 56899999999999999999999999999987653
|
| >3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-10 Score=107.79 Aligned_cols=91 Identities=15% Similarity=0.303 Sum_probs=71.8
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec---------CCChHHHHH
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDDLIN 522 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~---------~g~w~Gmi~ 522 (550)
+++|||++... +||.+...+... . +|+.++.||++||+++|++.+|++++|.++|+ ++.|++++.
T Consensus 3 ~~~l~v~~~~~---~P~~~~~~~~~~-~--~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~ 76 (259)
T 3g3k_A 3 NRSLIVTTILE---EPYVLFKKSDKP-L--YGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVR 76 (259)
T ss_dssp CCCEEEEECCB---TTTBEECCCSSC-C--CGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHH
T ss_pred CcEEEEEEecC---CCeEEEeecccc-c--CCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHH
Confidence 56788888743 789887654211 1 13568999999999999999999944444433 468999999
Q ss_pred hhhcccccEEeeceeeeeeeeeEEEe
Q 008863 523 GVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 523 el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
.|.+|++|++++++++|.+|++.+..
T Consensus 77 ~l~~g~~D~~~~~~~~t~eR~~~~~f 102 (259)
T 3g3k_A 77 ELIDHKADLAVAPLAITYVREEVIDF 102 (259)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEE
T ss_pred HHhcCcccEEEeeeEecccccceEee
Confidence 99999999999999999999987753
|
| >1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-10 Score=108.86 Aligned_cols=90 Identities=16% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec-----------CCChHH
Q 008863 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH-----------DGVYDD 519 (550)
Q Consensus 451 ~~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~-----------~g~w~G 519 (550)
..++|||++.. ++||.+....... .. ++.++.|||+||+++|++.+|++ |+++.+ ++.|++
T Consensus 11 ~~~~l~V~~~~---~~P~~~~~~~~~~-~~--~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~ 82 (312)
T 1yae_A 11 SNRSLIVTTIL---EEPYVLFKKSDKP-LY--GNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKYGAQDDVNGQWNG 82 (312)
T ss_dssp CSCEEEEEECC---BTTTBEECCCSSC-CC--GGGGEESHHHHHHHHHHHHHCCE--EEEEECSSCCCCCBCTTTCCBCS
T ss_pred cCceEEEEEec---cCCeeEEeccccc-cC--CCceEEEEEHHHHHHHHHHcCCe--EEEEecCCCccceeccCCCcchH
Confidence 34567888763 3789887521100 00 14479999999999999999999 666654 579999
Q ss_pred HHHhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 520 LINGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 520 mi~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
++..|.+|++|++++++++|.+|++.+..
T Consensus 83 ~~~~l~~g~~D~~~~~~~~t~eR~~~~~f 111 (312)
T 1yae_A 83 MVRELIDHKADLAVAPLAITYVREKVIDF 111 (312)
T ss_dssp HHHHHHTTSCSEECSSCBCCHHHHHHEEE
T ss_pred HHHHHhCCCcCEEeecceechhhcceEEe
Confidence 99999999999999999999999987653
|
| >2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A | Back alignment and structure |
|---|
Probab=98.89 E-value=8.1e-10 Score=103.16 Aligned_cols=87 Identities=21% Similarity=0.389 Sum_probs=70.7
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec----------CCChHHHH
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH----------DGVYDDLI 521 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~----------~g~w~Gmi 521 (550)
+++|+|.+... +||.+...+..+ .+.++.||++||+++|++.+|++ +++++. ++.|++++
T Consensus 2 ~~~l~v~~~~~---pP~~~~~~~~~g-----~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~ 71 (265)
T 2v3u_A 2 GVVLRVVTVLE---EPFVMVSENVLG-----KPKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLV 71 (265)
T ss_dssp CCEEEEEECCB---TTTBEEECCSTT-----CCCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHH
T ss_pred CeEEEEEEecc---CCeEEEecCCCC-----CcceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHH
Confidence 56778887643 889887654211 12379999999999999999999 777764 46899999
Q ss_pred HhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 522 NGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 522 ~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
..|.+|++|++++++++|.+|++.+..
T Consensus 72 ~~l~~g~~D~~~~~~~~t~~R~~~~~f 98 (265)
T 2v3u_A 72 GELVFKRADIGISALTITPDRENVVDF 98 (265)
T ss_dssp HHHHTTSCSEECSSCBCCHHHHTTEEE
T ss_pred HHHHcCCcCeEEeeeEeehhhhccccc
Confidence 999999999999999999999986653
|
| >1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-09 Score=98.95 Aligned_cols=88 Identities=10% Similarity=0.234 Sum_probs=69.8
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecC-----------CChHHH
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHD-----------GVYDDL 520 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~-----------g~w~Gm 520 (550)
+++|+|.+. .++||.+...+... . +++..+.||++||+++|++.+|++ +++++.+ ..|+++
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~-~--~~~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~ 74 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEM-L--EGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGM 74 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGG-C--CGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHH
T ss_pred CeEEEEEEe---cCCCcEEEecCccc-c--cCCCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHH
Confidence 466788875 46899987543100 0 023479999999999999999999 7777652 279999
Q ss_pred HHhhhcccccEEeeceeeeeeeeeEEE
Q 008863 521 INGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 521 i~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
+..|.+|++|++++++++|.+|++.+.
T Consensus 75 ~~~l~~g~~D~~~~~~~~t~~R~~~~~ 101 (263)
T 1mqi_A 75 VGELVYGKADIAIAPLTITLVREEVID 101 (263)
T ss_dssp HHHHHTTSCSEECSSCBCCHHHHTTEE
T ss_pred HHHHHcCCcCEEEEeeEecHHHHhhcc
Confidence 999999999999999999999997664
|
| >4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-09 Score=98.45 Aligned_cols=79 Identities=16% Similarity=0.351 Sum_probs=66.2
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC-CCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l-~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
++|+|++ ...|+||.+..++. .+.||++||+++|++.| |++ +++++. .|++++..|..|++|+
T Consensus 9 ~tl~vg~--~~~~pP~~~~d~~G----------~~~G~~vdl~~~ia~~l~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 72 (243)
T 4gvo_A 9 QTITVGT--GTQFPNVCFLDENG----------KLTGYDVELVKEIDKRLPGYK--FKFKTM--DFSNLLVSLGAGKVDI 72 (243)
T ss_dssp EEEEEEE--CSEETTTEEECTTS----------CEESHHHHHHHHHHHTCTTEE--EEEEEC--CGGGHHHHHHTTSCSE
T ss_pred CeEEEEE--CCCCCCeEEECCCC----------cEEEhHHHHHHHHHHhccCCe--EEEEEC--CHHHHHHHHHCCCCCE
Confidence 4567775 34689998875433 68999999999999998 888 777775 5999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++++++|+||++.+.
T Consensus 73 ~~~~~~~t~eR~~~~~ 88 (243)
T 4gvo_A 73 VAHQMEKSKEREKKFL 88 (243)
T ss_dssp ECSCCBCCHHHHHHSE
T ss_pred ecccCCCCHHHhhhhh
Confidence 9999999999998654
|
| >3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-08 Score=92.09 Aligned_cols=80 Identities=16% Similarity=0.232 Sum_probs=66.6
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.+++||+.. ..++||.+..++. .+.||++||+++|++.+|++ +++++. .|+.++..|.+|++|+
T Consensus 4 a~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 67 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFINDAG----------EVDGFERELGDELCKRAGLT--CEWVKN--DWDSIIPNLVSGNYDT 67 (232)
T ss_dssp --CEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCC--EEEEEC--CGGGHHHHHHTTSCSE
T ss_pred CCEEEEEEC--CCCCCeeEECCCC----------CEeeehHHHHHHHHHHcCCc--eEEEEC--CHHHHHHHHHCCCCCE
Confidence 356777754 4578999874432 68999999999999999999 777774 7999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++++++|.+|++.+.
T Consensus 68 ~~~~~~~t~~r~~~~~ 83 (232)
T 3i6v_A 68 IIAGMSITDERDEVID 83 (232)
T ss_dssp ECSSCBCCHHHHTTSE
T ss_pred EEeCCcCCHHHHhhcC
Confidence 9999999999987654
|
| >4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-08 Score=92.59 Aligned_cols=82 Identities=10% Similarity=0.131 Sum_probs=67.2
Q ss_pred CeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEe
Q 008863 454 PMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNY 533 (550)
Q Consensus 454 ~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~ 533 (550)
+|+|++ ...|+||.+..... ++..+.||.+||+++|++.+|++ +++++. .|++++..|..|++|+++
T Consensus 13 ~L~Vg~--~~~~pP~~~~~~~d-------~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~--~~~~~~~~l~~g~~d~~~ 79 (243)
T 4h5g_A 13 KLVVAT--SPDYAPFEFQSLVD-------GKNQVVGADIDMAQAIADELGVK--LEILSM--SFDNVLTSLQTGKADLAV 79 (243)
T ss_dssp EEEEEE--CCCBTTTBEEEEET-------TEEEEESHHHHHHHHHHHHHTSE--EEEEEC--CGGGHHHHHHTTSCSEEC
T ss_pred EEEEEE--CCCCCCcEeeeccC-------CCCcEEEeHHHHHHHHHHHhCCc--eEEecc--cHHHHHHHHHcCCCCccc
Confidence 456765 34678998764321 23479999999999999999999 777775 599999999999999999
Q ss_pred eceeeeeeeeeEEEe
Q 008863 534 HDKLLFKKKKRLCLV 548 (550)
Q Consensus 534 ~~~ti~~~r~~~~~~ 548 (550)
+++++|.||++.+..
T Consensus 80 ~~~~~t~eR~~~~~f 94 (243)
T 4h5g_A 80 AGISATDERKEVFDF 94 (243)
T ss_dssp SSCBCCHHHHTTEEE
T ss_pred ccccCChhHccEEEc
Confidence 999999999987653
|
| >3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-05 Score=73.99 Aligned_cols=209 Identities=11% Similarity=0.040 Sum_probs=138.1
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCC-eEEEEcC-CChHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEK-VKVIAGM-ETWEETA 111 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~-v~aiiG~-~~s~~~~ 111 (550)
++||+++|.. .........+++.+.++. |+.+.+...++..++....+....++.+ + +.+||-. ..+....
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~vdgii~~~~~~~~~~ 74 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA-----GVTLLHRSTKDDGDIAGQIQILSYHLSQ-APPDALILAPNSAEDLT 74 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH-----TCEEEECCCSSTTCHHHHHHHHHHHHHH-SCCSEEEECCSSTTTTH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEEEECCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCHHHHH
Confidence 5899999865 344456667787777775 6677665545677888777888888875 6 8877753 3333444
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc----CCeEEEEEEEcCCCCCcchhHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY----NWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~----~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.....+...++|+|..... .+.. +....+.++....+..++++|... |.++++++.............+
T Consensus 75 ~~~~~~~~~~ipvV~~~~~--~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 75 PSVAQYRARNIPVLVVDSD--LAGD-----AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp HHHHHHHHTTCCEEEESSC--CSSS-----CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEecC--CCCC-----CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 4555667789999998765 2211 122346788888999999999777 8999999986533111155678
Q ss_pred HHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 188 LLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 188 ~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
.+.+.+++. | +.+.... .... ........++++.+. .++.|+ +.+...+..+++++++.|+ +.+...
T Consensus 148 gf~~~l~~~~~-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~-p~di~v 217 (276)
T 3ksm_A 148 GFLDVLRKHDK-IRIIAAP--YAGD----DRGAARSEMLRLLKETPTIDGLF--TPNESTTIGALVAIRQSGM-SKQFGF 217 (276)
T ss_dssp HHHHHHTTCTT-EEEEECC--BCCS----SHHHHHHHHHHHHHHCSCCCEEE--CCSHHHHHHHHHHHHHTTC-TTSSEE
T ss_pred HHHHHHHhCCC-cEEEEEe--cCCC----cHHHHHHHHHHHHHhCCCceEEE--ECCchhhhHHHHHHHHcCC-CCCeEE
Confidence 888999888 7 7765322 1111 334444555555443 455554 4677778889999999998 444334
Q ss_pred EE
Q 008863 265 IV 266 (550)
Q Consensus 265 i~ 266 (550)
++
T Consensus 218 ig 219 (276)
T 3ksm_A 218 IG 219 (276)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-07 Score=86.94 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=66.5
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|+.. ..++||.+..++. .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 15 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 78 (239)
T 3kbr_A 15 GVLRVATT--GDYKPFSYRTEEG----------GYAGFDVDMAQRLAESLGAK--LVVVPT--SWPNLMRDFADDRFDIA 78 (239)
T ss_dssp TEEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHTTCE--EEEEEC--CTTTHHHHHHTTCCSEE
T ss_pred CeEEEEEC--CCCCCeeEECCCC----------CEEeehHHHHHHHHHHHCCc--eEEEEe--CHHHHHHHHHCCCcCEE
Confidence 45677763 3578998875432 68999999999999999998 777775 79999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++++++|.+|++.+.
T Consensus 79 ~~~~~~t~~r~~~~~ 93 (239)
T 3kbr_A 79 MSGISINLERQRQAY 93 (239)
T ss_dssp CSSCBCCHHHHTTCE
T ss_pred EeCCcCCHHHcCccc
Confidence 999999999987654
|
| >3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-07 Score=87.28 Aligned_cols=79 Identities=16% Similarity=0.274 Sum_probs=66.4
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... ..++||.+..++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|++
T Consensus 5 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 68 (245)
T 3k4u_A 5 GELRVGLE--PGYLPFEMKDKKG----------NVIGFDVDLAREMAKAMGVK--LKLVPT--SWDGLIPGLVTEKFDII 68 (245)
T ss_dssp SEEEEEEC--TTSTTTCEEETTT----------EEESHHHHHHHHHHHHHTCE--EEEEEC--CGGGHHHHHHTTSCSEE
T ss_pred CeEEEEEC--CCcCCeeEECCCC----------CCccchHHHHHHHHHHhCCe--EEEEEc--cHHHHHHHHhCCCcCEE
Confidence 45677764 4678998875433 69999999999999999999 777775 59999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
+++++.|.+|++.+.
T Consensus 69 ~~~~~~t~~r~~~~~ 83 (245)
T 3k4u_A 69 ISGMTISQERNLRVN 83 (245)
T ss_dssp CSSCBCCHHHHTTSE
T ss_pred EecCcCCHHHHhhcC
Confidence 999999999987554
|
| >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-07 Score=85.67 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=65.7
Q ss_pred CCeEecccCcccccccEEE-ecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 453 EPMRIGVPTRTFFEKFVVI-KDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~-~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
++++|+.. ..++||.+. .++. .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|+
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 66 (237)
T 3kzg_A 3 LNLTIGTS--KFNPPFEVWSGNNS----------SLYGFDIDLMQEICRRLHAT--CTFEAY--IFDDLFPALKNREVDL 66 (237)
T ss_dssp CEEEEEEE--SEETTTEECCCTTS----------CCBSHHHHHHHHHHHHTTCE--EEEEEE--CGGGHHHHHHTTSSSE
T ss_pred ceEEEEEC--CCCCCeEEEeCCCC----------CEeeehHHHHHHHHHHhCCc--eEEEEc--CHHHHHHHHhCCCCCE
Confidence 45677764 347899876 3222 68999999999999999998 777775 5999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++++++|.+|++.+.
T Consensus 67 ~~~~~~~~~~r~~~~~ 82 (237)
T 3kzg_A 67 VIASMIITDERKKHFI 82 (237)
T ss_dssp ECSSCBCCTTGGGTCE
T ss_pred EEEccccChhHhccce
Confidence 9999999999987654
|
| >3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-07 Score=83.13 Aligned_cols=80 Identities=9% Similarity=0.175 Sum_probs=65.8
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
+++||+.. ..++||.+..++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|++
T Consensus 2 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 65 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMGPSG----------QVEGFGADIVKAVCKQMQAV--CTISNQ--PWDSLIPSLKLGKFDAL 65 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC--C----------CEESHHHHHHHHHHHHTTCE--EEEEEC--CHHHHHHHHHHTSCSEE
T ss_pred ceEEEEEc--CCCCCeeEECCCC----------CcccchHHHHHHHHHHhCCe--EEEEeC--CHHHHHHHHhCCCCCEE
Confidence 45677764 2478999874432 68999999999999999999 777774 69999999999999999
Q ss_pred eeceeeeeeeeeEEEe
Q 008863 533 YHDKLLFKKKKRLCLV 548 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~~ 548 (550)
+++++.+.+|++.+..
T Consensus 66 ~~~~~~~~~r~~~~~~ 81 (227)
T 3tql_A 66 FGGMNITTARQKEVDF 81 (227)
T ss_dssp CSSCBCCTTGGGTEEE
T ss_pred EecCcCCHhHHhheec
Confidence 9999999999886653
|
| >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.9e-07 Score=85.57 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=66.0
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|+. ...++||.+..++. .+.||++||+++|++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 11 ~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 74 (242)
T 3del_B 11 EKFIVGT--NATYPPFEFVDKRG----------EVVGFDIDLAREISNKLGKT--LDVREF--SFDALILNLKQHRIDAV 74 (242)
T ss_dssp CEEEEEE--CSCBTTTBEECTTS----------CEESHHHHHHHHHHHHHTCE--EEEEEC--CGGGHHHHHHTTSSSEE
T ss_pred CcEEEEe--CCCCCCeeEECCCC----------CEEEeeHHHHHHHHHHcCCc--eEEEEc--CHHHHHHHHhCCCcCEE
Confidence 4567776 33578998764432 68999999999999999988 788776 69999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++++++|.+|++.+.
T Consensus 75 ~~~~~~~~~r~~~~~ 89 (242)
T 3del_B 75 ITGMSITPSRLKEIL 89 (242)
T ss_dssp CSSBBCCHHHHTTEE
T ss_pred EecCcCCHHHHhccc
Confidence 999999999987553
|
| >1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-07 Score=85.01 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=65.4
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|++ ...++||.+..++. .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 4 ~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 67 (239)
T 1lst_A 4 QTVRIGT--DTTYAPFSSKDAKG----------EFIGFDIDLGNEMCKRMQVK--CTWVAS--DFDALIPSLKAKKIDAI 67 (239)
T ss_dssp SEEEEEE--CSCBTTTBEECTTC----------CEESHHHHHHHHHHHHHTCE--EEEEEC--CGGGHHHHHHTTSCSEE
T ss_pred ceEEEEE--CCCcCCeeEECCCC----------CEeeEHHHHHHHHHHHHCCe--EEEEeC--CHHHHHHHHhCCCCCEE
Confidence 4567776 23578998764432 68999999999999999998 777764 79999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++++++|.+|++.+.
T Consensus 68 ~~~~~~t~~r~~~~~ 82 (239)
T 1lst_A 68 ISSLSITDKRQQEIA 82 (239)
T ss_dssp CSSCBCCHHHHHHCE
T ss_pred EECcCcCHHHhhcee
Confidence 999999999987544
|
| >3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-07 Score=86.50 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
+++||+.. ..++||.+..++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|++
T Consensus 21 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 84 (268)
T 3hv1_A 21 KKIKIGFD--ATFVPMGYEEKDG----------SYIGFDIDLANAVFKLYGID--VEWQAI--DWDMKETELKNGTIDLI 84 (268)
T ss_dssp TEEEEEEC--TEETTTEEECTTS----------CEECHHHHHHHHHHHTTTCE--EEEEEC--CGGGHHHHHHHTSCSEE
T ss_pred CcEEEEEC--CCCCCceEECCCC----------CEEEehHHHHHHHHHHhCCc--EEEEEC--CHHHHHHHHHCCCCCEE
Confidence 45677764 3578999875432 68999999999999999998 777776 49999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++++++|.+|++.+.
T Consensus 85 ~~~~~~t~~r~~~~~ 99 (268)
T 3hv1_A 85 WNGYSVTDERKQSAD 99 (268)
T ss_dssp CSSCBCCHHHHTTCE
T ss_pred EecCccCHHHHhcCc
Confidence 999999999987654
|
| >3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.6e-06 Score=76.60 Aligned_cols=201 Identities=10% Similarity=0.062 Sum_probs=129.8
Q ss_pred CcEEEEEEEec---CCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDA---NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~---~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+.+||+++|. +.........+++.++++. |+.+ .+.+...++....+....++. .++.+||.......
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~ 89 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-----GRQL--LLADGKHSAEEERQAIQYLLD-LRCDAIMIYPRFLS 89 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT-----TCEE--EEECCTTSHHHHHHHHHHHHH-TTCSEEEEECSSSC
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCC
Confidence 57899999986 3445566777877777663 5554 445667777766677777775 58888876332222
Q ss_pred HHHHHHhhcc-CCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhH
Q 008863 110 TAVVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKL 186 (550)
Q Consensus 110 ~~~v~~~~~~-~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~ 186 (550)
...+. .+.. .++|+|..... .+. +.+..+..+....+..++++|...|.+++++|..+.. .. ....
T Consensus 90 ~~~~~-~l~~~~~iPvV~~~~~--~~~------~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~--~~R~ 158 (296)
T 3brq_A 90 VDEID-DIIDAHSQPIMVLNRR--LRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTS--IERL 158 (296)
T ss_dssp HHHHH-HHHHTCSSCEEEESCC--CSS------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHH--HHHH
T ss_pred hHHHH-HHHhcCCCCEEEEccc--cCC------CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccH--HHHH
Confidence 22233 3445 79999998754 221 1223466777778888899998889999999987643 23 4556
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+.+++.| +.+.....+.... +..+....++++.+. +++.|+. .+...+..+++++++.|+.-
T Consensus 159 ~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 226 (296)
T 3brq_A 159 AGYKDALAQHG-IALNEKLIANGKW----TPASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMKALHERGVAV 226 (296)
T ss_dssp HHHHHHHHTTT-CCCCGGGEECCCS----SHHHHHHHHHHHHTC--CCSEEEE--SSHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHcC-CCCChhhEEeCCC----ChhHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 77888999888 7654322222111 223444556666543 5677765 56677888999999999863
|
| >4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.9e-07 Score=84.55 Aligned_cols=81 Identities=12% Similarity=0.226 Sum_probs=67.4
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|... ..++||.+..++. .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|+
T Consensus 28 ~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 91 (259)
T 4dz1_A 28 GRTLNVAVS--PASPPMLFKSADG----------KLQGIDLELFSSYCQSRHCK--LNITEY--AWDGMLGAVASGQADV 91 (259)
T ss_dssp TCEEEEEEC--CCBTTTBEECTTC----------CEESHHHHHHHHHHHHHTCE--EEEEEC--CHHHHHHHHHHTSSSE
T ss_pred CCeEEEEEC--CCCCCeEEECCCC----------CEEEeHHHHHHHHHHHhCCe--EEEEEc--CHHHHHHHHhCCCCCE
Confidence 355677663 3568998765332 68999999999999999999 777776 7999999999999999
Q ss_pred EeeceeeeeeeeeEEEe
Q 008863 532 NYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~~ 548 (550)
+++++++|.+|++.+..
T Consensus 92 ~~~~~~~t~~r~~~~~f 108 (259)
T 4dz1_A 92 AFSGISITDKRKKVIDF 108 (259)
T ss_dssp EEEEEECCHHHHTTEEE
T ss_pred EEECCcCCHHHhhcccc
Confidence 99999999999986653
|
| >4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-07 Score=83.84 Aligned_cols=81 Identities=15% Similarity=0.296 Sum_probs=66.8
Q ss_pred CCCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhccccc
Q 008863 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNY 530 (550)
Q Consensus 451 ~~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad 530 (550)
..++++|... ..++||.+. ++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|
T Consensus 22 ~~~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D 84 (249)
T 4f3p_A 22 MAKELVVGTD--TSFMPFEFK-QGD----------KYVGFDLDLWAEIAKGAGWT--YKIQPM--DFAGLIPALQTQNID 84 (249)
T ss_dssp --CCEEEEEE--SCBTTTBEE-ETT----------EEESHHHHHHHHHHHHHTCC--EEEEEE--CGGGHHHHHHTTSCS
T ss_pred cCceEEEEeC--CCCCCeEEe-cCC----------eEEEEhHHHHHHHHHHcCCc--eEEEec--CHHHHHHHHHCCCCC
Confidence 4566788764 357899886 332 68899999999999999999 777765 699999999999999
Q ss_pred EEeeceeeeeeeeeEEEe
Q 008863 531 FNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 531 ~a~~~~ti~~~r~~~~~~ 548 (550)
+++++++.|.+|++.+..
T Consensus 85 ~~~~~~~~~~~r~~~~~~ 102 (249)
T 4f3p_A 85 VALSGMTIKEERRKAIDF 102 (249)
T ss_dssp EEEEEEECCHHHHTTEEE
T ss_pred EEEeccccCHHHHcCcce
Confidence 999999999999886653
|
| >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-05 Score=72.17 Aligned_cols=209 Identities=14% Similarity=0.134 Sum_probs=135.3
Q ss_pred cEEEEEEEecCC--ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhc-CCeEEEEcCCChHHH
Q 008863 34 VTKIGAIVDANS--QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEET 110 (550)
Q Consensus 34 ~i~IG~i~~~~~--~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~ 110 (550)
..+||+++|... .+-.....+++.+.++. |+.+.+ .+...++....+.+.+++.. .++.+||-.......
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-----g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~ 75 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL-----GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVA 75 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH-----TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc-----CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhH
Confidence 468999999763 34456667777777775 555554 46777888778888888874 477776643333344
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccC-------CCC-CeEEEEecCcHHhHHHHHHHHHHcC------C-eEEEEEEE
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMS-------RRW-PYLIRMASNDSEQMKCIADLARKYN------W-RRVAAIYE 175 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~-------~~~-~~~~~~~p~~~~~~~al~~~l~~~~------w-~~v~ii~~ 175 (550)
..+...+...+||+|..... .+.... ..+ .++..+.++....+..++++|...+ - +++++|..
T Consensus 76 ~~~~~~~~~~giPvV~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g 153 (350)
T 3h75_A 76 PQILRLSQGSGIKLFIVNSP--LTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSG 153 (350)
T ss_dssp HHHHHHHTTSCCEEEEEESC--CCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEES
T ss_pred HHHHHHHHhCCCcEEEEcCC--CChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeC
Confidence 55566778889999998765 332211 111 1366778888888999999987665 4 89999986
Q ss_pred cCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHH
Q 008863 176 DNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEAN 253 (550)
Q Consensus 176 ~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~ 253 (550)
...........+.+.+.+++.+ . +.....+.... +.+.....++++.+. +++.|+ +++...+..++++++
T Consensus 154 ~~~~~~~~~R~~Gf~~~l~~~~-~-~~~~~~~~~~~----~~~~~~~~~~~~L~~~~~~~aI~--~~~d~~a~g~~~al~ 225 (350)
T 3h75_A 154 LKVTPAAQLRERGLRRALAEHP-Q-VHLRQLVYGEW----NRERAYRQAQQLLKRYPKTQLVW--SANDEMALGAMQAAR 225 (350)
T ss_dssp CTTSHHHHHHHHHHHHHHHHCT-T-EEEEEEEECTT----CHHHHHHHHHHHHHHCTTEEEEE--ESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCC-C-eEEEEEeeCCC----cHHHHHHHHHHHHHhCCCcCEEE--ECChHHHHHHHHHHH
Confidence 5432111455678888998888 5 22222222211 233444555555443 345544 567788889999999
Q ss_pred HcCCCC
Q 008863 254 RMGLVG 259 (550)
Q Consensus 254 ~~g~~~ 259 (550)
+.|+.-
T Consensus 226 ~~G~~v 231 (350)
T 3h75_A 226 ELGRKP 231 (350)
T ss_dssp HTTCCB
T ss_pred HcCCCC
Confidence 999863
|
| >2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.6e-05 Score=71.98 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=130.1
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
++||++.|...........+++.++++. |+++.+.. .+..++....+...+++. .++.+||. |..+......
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~-~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~ 74 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL-----GVDTKFFV-PQKEDINAQLQMLESFIA-EGVNGIAIAPSDPTAVIPT 74 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH-----TCEEEEEC-CSSSCHHHHHHHHHHHHH-TTCSEEEECCSSTTTTHHH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc-----CCEEEEEC-CCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHHHH
Confidence 6899999875334445667777777765 56655432 245677777777778876 58887774 4444333333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC--CCCcchhHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKLALL 189 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~~~l 189 (550)
...+...++|+|..... .+.. +.+..+.+++...+..++++|... |.+++++|..... .. ....+.+
T Consensus 75 ~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~--~~R~~gf 145 (313)
T 2h3h_A 75 IKKALEMGIPVVTLDTD--SPDS-----GRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNS--LQRIQGF 145 (313)
T ss_dssp HHHHHHTTCCEEEESSC--CTTS-----CCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHH--HHHHHHH
T ss_pred HHHHHHCCCeEEEeCCC--CCCc-----ceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccH--HHHHHHH
Confidence 44556689999998765 2211 123346688888888899998776 9999999987532 23 4566788
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
++.+++.| +++........ +..+....++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 146 ~~~l~~~g-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~p 207 (313)
T 2h3h_A 146 KDAIKDSE-IEIVDILNDEE------DGARAVSLAEAALNAHPDLDAFFG--VYAYNGPAQALVVKNAGKV 207 (313)
T ss_dssp HHHHTTSS-CEEEEEEECSS------CHHHHHHHHHHHHHHCTTCCEEEE--CSTTHHHHHHHHHHHTTCT
T ss_pred HHHhcCCC-CEEEEeecCCC------CHHHHHHHHHHHHHHCcCceEEEE--cCCCccHHHHHHHHHcCCC
Confidence 89999988 87754322111 234445556665543 4577765 4455777899999999953
|
| >1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5.6e-07 Score=81.72 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=62.7
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|.+. +++||.+..++. +..+.||++||++++++.+|++ ++++.. +.|+.++..|.+|++|+
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~--------~g~~~G~~~dl~~~i~~~~g~~--~~~~~~-~~~~~~~~~l~~g~~D~ 68 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK--------NAAFTGISLDVWRAVAESQKWN--SEYVRQ-NSISAGITAVAEGELDI 68 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC-------------CEESHHHHHHHHHHHHHTCC--EEEEEC-SCHHHHHHHHHTTSCSE
T ss_pred CceEEEEec---CCCCeEEEecCC--------CCCEEEEeHHHHHHHHHHcCCc--EEEEEe-CCHHHHHHHHHCCCcCE
Confidence 356788775 368998862111 1268999999999999999998 777764 26999999999999999
Q ss_pred Eeeceeeeeeee
Q 008863 532 NYHDKLLFKKKK 543 (550)
Q Consensus 532 a~~~~ti~~~r~ 543 (550)
++++++++.+|+
T Consensus 69 ~~~~~~~~~~r~ 80 (233)
T 1ii5_A 69 LIGPISVTPERA 80 (233)
T ss_dssp EEEEEECCHHHH
T ss_pred EEeeeecCcccc
Confidence 999999999997
|
| >1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.6e-05 Score=72.36 Aligned_cols=202 Identities=12% Similarity=0.096 Sum_probs=128.0
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....+++ .++.+||........
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~~- 76 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-----GYTLIL--GNAWNNLEKQRAYLSMMAQ-KRVDGLLVMCSEYPE- 76 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEEECSCCCH-
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCeEEE--EcCCCChHHHHHHHHHHHh-CCCCEEEEEeccCCH-
Confidence 467899999864 334455667777777764 565554 5666777766666777775 688877752222111
Q ss_pred HHHHhhcc-CCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC--CCCCcchhHHH
Q 008863 112 VVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN--VYGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~-~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~--~~g~~~~~~~~ 188 (550)
.+...+.. .++|+|..... .+. . ++...+.++....+..++++|...|.+++++|..+. ... ....+.
T Consensus 77 ~~~~~l~~~~~iPvV~~~~~--~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~g 147 (289)
T 1dbq_A 77 PLLAMLEEYRHIPMVVMDWG--EAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTG--AGRLAG 147 (289)
T ss_dssp HHHHHHHHTTTSCEEEEECS--SCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC--------CHHHHH
T ss_pred HHHHHHHhccCCCEEEEccC--CCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccH--HHHHHH
Confidence 22233333 79999988754 221 1 223356778888889999999888999999998653 234 667788
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+++.| +.+.....+.... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 148 ~~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~v 213 (289)
T 1dbq_A 148 FMKAMEEAM-IKVPESWIVQGDF----EPESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALCAADEMGLRV 213 (289)
T ss_dssp HHHHHHHTT-CCCCGGGBCCCCS----SHHHHHHHHHHHHTSSSCCSEEEE--SCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHCC-CCCChHHeEeCCC----CHHHHHHHHHHHHhCCCCCCEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 999999988 6543221121111 223444556665543 5677665 56677888999999999863
|
| >3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.4e-05 Score=71.18 Aligned_cols=203 Identities=12% Similarity=0.034 Sum_probs=133.3
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~ 110 (550)
++.+||+++|.. ..+......+++.+.++. |+.+. +.+...++....+....++. .++.+|| .|..+...
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~ 75 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL-----GGTAI--ALDAGRNDQTQVSQIQTLIA-QKPDAIIEQLGNLDVL 75 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHHH-HCCSEEEEESSCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEE--EEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhh
Confidence 467999999965 233345566666666664 55554 45666777777777777776 4787777 45554555
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH--cCCeEEEEEEEcCCCCCcchhHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~--~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
......+...++|+|..... .+ +.+..+..+....+..++++|.. .|.++++++.............+.
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~--~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTA--TP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCC--CT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCC--CC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 55666677789999998765 21 12335678888889999999977 899999999754332111345677
Q ss_pred HHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-----CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-----QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-----~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+.+.+++. | +++.....+.... .........++++.+. +++.|+ +.+...+..+++++++.|+.
T Consensus 147 f~~~l~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 147 MKYVLEAFPD-VKIIEPELRDVIP---NTIQSAYSNVTDMLTKYPNEGDVGAIW--ACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHHTCTT-EEECSSCBCCCSS---SHHHHHHHHHHHHHHHCCSTTSCCEEE--ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCC-CEEEeeeccCCCC---CCHHHHHHHHHHHHHhCCCcCCcCEEE--ECCCchHHHHHHHHHHcCCC
Confidence 88888888 6 6643322222211 0123334455555443 456665 46778888999999999987
|
| >2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00019 Score=68.90 Aligned_cols=205 Identities=10% Similarity=-0.013 Sum_probs=132.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCC--eEEEEcC-CChH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEK--VKVIAGM-ETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~--v~aiiG~-~~s~ 108 (550)
++.+||+++|.. .........+++.+.++. |+.+. +.++..++....+....+++ .+ +.+||.. ....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~l~--~~~~~~~~~~~~~~i~~l~~-~~~~vdgiIi~~~~~~ 75 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV-----GLPYV--PLTTEGSSEKGIADIRALLQ-KTGGNLVLNVDPNDSA 75 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TCCEE--EEECTTCHHHHHHHHHHHHH-HTTTCEEEEECCSSHH
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc-----CCEEE--EecCCCCHHHHHHHHHHHHH-CCCCCCEEEEeCCCHH
Confidence 567899999854 333345566776666664 55554 45666777766677777776 46 8888764 3333
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCC-C-CeEEEEecCcHHhHHHHHHHHHH--cCCeEEEEEEEcCC--CCCc
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRR-W-PYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDNV--YGGD 182 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~-~-~~~~~~~p~~~~~~~al~~~l~~--~~w~~v~ii~~~~~--~g~~ 182 (550)
........+...++|+|..... .+...... . +.+..+..+....+..++++|.. .|.+++++|..... ..
T Consensus 76 ~~~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~-- 151 (332)
T 2rjo_A 76 DARVIVEACSKAGAYVTTIWNK--PKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPA-- 151 (332)
T ss_dssp HHHHHHHHHHHHTCEEEEESCC--CTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHH--
T ss_pred HHHHHHHHHHHCCCeEEEECCC--CCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccH--
Confidence 3323444555679999988754 22211011 1 35667888888889999999877 69999999986533 22
Q ss_pred chhHHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 183 SGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 183 ~~~~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
....+.|.+.+++. | +.+..... ... ...+....++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 152 ~~R~~Gf~~al~~~pg-i~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~~aI~~--~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 152 IERKAGLDAALKKFPG-IQLLDFQV-ADW-----NSQKAFPIMQAWMTRFNSKIKGVWA--ANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHHHTCTT-EEEEEEEE-CTT-----CHHHHHHHHHHHHHHHGGGEEEEEE--SSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHhCCC-cEEEeecc-CCC-----CHHHHHHHHHHHHHhcCCCeeEEEE--CCCchHHHHHHHHHHcCCC
Confidence 45667788999998 8 87654321 111 223444455555443 4566554 5667788899999999986
|
| >4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-07 Score=84.15 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=65.6
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCC-CCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLN-YDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~-f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
++++|+.. ..++||.+. ++. ...||++||++++++.+| ++ +++++. .|..++..|.+|++|+
T Consensus 8 ~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~~dl~~~i~~~~g~~~--~~~~~~--~~~~~~~~l~~g~~D~ 70 (246)
T 4eq9_A 8 KEIIVATN--GSPRPFIYE-ENG----------ELTGYEIEVVRAIFKDSDKYD--VKFEKT--EWSGVFAGLDADRYNM 70 (246)
T ss_dssp EEEEEEEC--CCSTTTSEE-ETT----------EEESHHHHHHHHHHTTCSSEE--EEEEEC--CHHHHHHHHHTTSCSE
T ss_pred CEEEEEeC--CCcCCeEEc-CCC----------CCcccHHHHHHHHHHHcCCce--EEEEeC--CHHHHHHHHhCCCcCE
Confidence 45667654 256889873 332 689999999999999999 88 778776 7999999999999999
Q ss_pred EeeceeeeeeeeeEEEe
Q 008863 532 NYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~~ 548 (550)
+++++++|.+|++.+..
T Consensus 71 ~~~~~~~~~~r~~~~~~ 87 (246)
T 4eq9_A 71 AVNNLSYTKERAEKYLY 87 (246)
T ss_dssp ECSSCCCCHHHHHHEEE
T ss_pred EecccccChhhhhceee
Confidence 99999999999876543
|
| >2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.5e-07 Score=84.76 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=66.9
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++|+|.+. ..++||.+..++. |...+.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 21 ~~l~v~~~--~~~pP~~~~~~~~-------~~g~~~G~~~dl~~~i~~~~g~~--v~~~~~--~~~~~~~~l~~G~~D~~ 87 (271)
T 2iee_A 21 GKIVVATS--GTLYPTSYHDTDS-------GSDKLTGYEVEVVREAAKRLGLK--VEFKEM--GIDGMLTAVNSGQVDAA 87 (271)
T ss_dssp TEEEEEEC--SCBTTTBEEETTT-------TCCEEECHHHHHHHHHHHHTTCE--EEEEEC--CSTTHHHHHHHTSSSEE
T ss_pred CeEEEEEC--CCCCCeeEeCCCC-------CCCCceeeHHHHHHHHHHHcCCe--EEEEEC--CHHHHHHHHHCCCcCEE
Confidence 45677753 3578998875431 11278999999999999999998 777775 69999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
++.+++|.+|++.+.
T Consensus 88 ~~~~~~t~~r~~~~~ 102 (271)
T 2iee_A 88 ANDIDVTKDREEKFA 102 (271)
T ss_dssp CSSCBCCHHHHTTEE
T ss_pred EeCCcCChhhccceE
Confidence 999999999987654
|
| >2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00019 Score=68.07 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=128.3
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcC-CChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~~~~ 111 (550)
+-+||+++|.. .........+++.+.++. |+ +++.+.++..++....+....+++ .++.+||-. .......
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~~ 74 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAA-----PD-VQLLMNDSQNDQSKQNDQIDVLLA-KGVKALAINLVDPAAAG 74 (309)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHTC-----TT-EEEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSGGGHH
T ss_pred CcEEEEEeccCCcHHHHHHHHHHHHHHHhc-----CC-eEEEEecCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCcchhH
Confidence 35799999864 223334455555555443 44 344556777777766667777776 588877753 3333333
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH------------cCCeEEEEEEEcCC-
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK------------YNWRRVAAIYEDNV- 178 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~------------~~w~~v~ii~~~~~- 178 (550)
.....+...++|+|..... .+......++.+..+..+....+..++++|.. .|.+++++|.....
T Consensus 75 ~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~ 152 (309)
T 2fvy_A 75 TVIEKARGQNVPVVFFNKE--PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 152 (309)
T ss_dssp HHHHHHHTTTCCEEEESSC--CCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTC
T ss_pred HHHHHHHHCCCcEEEecCC--CCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCC
Confidence 4445566789999998754 22211111234566788888888888998866 68889999986533
Q ss_pred -CCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC----CCeEEEEEcCCHHHHHHHHHHHH
Q 008863 179 -YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK----QSRVFIVLQASLDMTIHLFTEAN 253 (550)
Q Consensus 179 -~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~----~~~~ii~~~~~~~~~~~il~~a~ 253 (550)
.. ....+.+.+.+++.| +.+.....+.... +..+....++++.+. .++.|+. .+...+..++++++
T Consensus 153 ~~~--~~R~~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~ 223 (309)
T 2fvy_A 153 PDA--EARTTYVIKELNDKG-IKTEQLQLDTAMW----DTAQAKDKMDAWLSGPNANKIEVVIA--NNDAMAMGAVEALK 223 (309)
T ss_dssp HHH--HHHHHHHHHHHHHTT-CCEEEEEEEECTT----CHHHHHHHHHHHHTSTTGGGCCEEEE--SSHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHHHHHHhcC-CceEEEEEecCCC----CHHHHHHHHHHHHHhCCCCCccEEEE--CCchhHHHHHHHHH
Confidence 22 455677888999888 7654332222111 223344555665543 4666665 56677888999999
Q ss_pred HcC
Q 008863 254 RMG 256 (550)
Q Consensus 254 ~~g 256 (550)
+.|
T Consensus 224 ~~g 226 (309)
T 2fvy_A 224 AHN 226 (309)
T ss_dssp HTT
T ss_pred HcC
Confidence 988
|
| >3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00014 Score=68.16 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=129.6
Q ss_pred CcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcC-CChH
Q 008863 33 EVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~ 108 (550)
++.+||+++|.. .........+++.++++. |+.+.+...++..++....+....++. .++.+||.. ....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~ 77 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-----EIKLEFMAPEKEEDYLVQNELIEEAIK-RKPDVILLAAADYE 77 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH-----TCEEEECCCSSTTCHHHHHHHHHHHHH-TCCSEEEECCSCTT
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc-----CCEEEEecCCCCCCHHHHHHHHHHHHH-hCCCEEEEeCCChH
Confidence 457899999854 234445667777777765 566655443436777766677777776 588887753 3332
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-C-CeEEEEEEEcCC--CCCcch
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N-WRRVAAIYEDNV--YGGDSG 184 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~-w~~v~ii~~~~~--~g~~~~ 184 (550)
........+...++|+|..... .+.. +.+..+.++....+..++++|... | .+++++|..... .. ..
T Consensus 78 ~~~~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~--~~ 148 (289)
T 3brs_A 78 KTYDAAKEIKDAGIKLIVIDSG--MKQD-----IADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTA--MD 148 (289)
T ss_dssp TTHHHHTTTGGGTCEEEEESSC--CSSC-----CCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHH--HH
T ss_pred HhHHHHHHHHHCCCcEEEECCC--CCCC-----cceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccH--HH
Confidence 2223344556679999987754 2211 224457788888889899998764 6 999999986533 22 45
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
..+.+.+.+++.| ..+.... .... ...+....++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 149 R~~gf~~~l~~~g-~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 149 REEGLKIGLSDDS-NKIEAIY-YCDS-----NYDKAYDGTVELLTKYPDISVMVG--LNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHHHHGGGG-GGEEEEE-ECTT-----CHHHHHHHHHHHHHHCTTEEEEEE--SSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhCC-CcEEeee-cCCC-----CHHHHHHHHHHHHHhCCCceEEEE--CCCcchHHHHHHHHhcCCC
Confidence 5677888888888 6543222 1111 233444555555443 4566554 5667788899999999987
|
| >3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C | Back alignment and structure |
|---|
Probab=98.22 E-value=5e-05 Score=71.95 Aligned_cols=207 Identities=12% Similarity=-0.038 Sum_probs=131.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~ 110 (550)
++.+||+++|.. ...-.....+++.+.++. |+.+.+...+...++....+....++. .++.+|| .|......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~~~ 77 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ-----GVNLRVLEAGGYPNKSRQEQQLALCTQ-WGANAIILGTVDPHAY 77 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH-----TCEEEEEECSSTTCHHHHHHHHHHHHH-HTCSEEEECCSSTTSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhHH
Confidence 578999999865 333345556776666665 566555443333387777777788877 4777766 44443322
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC-----CeEEEEEEEcCCCCCcchh
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN-----WRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~-----w~~v~ii~~~~~~g~~~~~ 185 (550)
......+. .++|+|..... .+.......+.+..+.++....+..++++|...+ -++++++............
T Consensus 78 ~~~~~~~~-~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 78 EHNLKSWV-GNTPVFATVNQ--LDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp TTTHHHHT-TTSCEEECSSC--CCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHc-CCCCEEEecCC--CcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 22334455 89999998654 2211112234566788888889999999998888 8999999765421111566
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhh-cCCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~-~~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+.+.+.+++.| +.+.... .... +.......++++. ...++. |. ++...+..+++++++.|+.
T Consensus 155 ~~gf~~~l~~~~-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~a-i~--~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSD-IHIVDSF--WADN----DKELQRNLVQRVIDMGNIDY-IV--GSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBT-EEEEECC--CCCS----CHHHHHHHHHHHHHHSCCSE-EE--ECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCC-CEEEEee--cCCC----cHHHHHHHHHHHHcCCCCCE-EE--ecCcchHHHHHHHHhcCCC
Confidence 788999999988 8776533 1111 2233334444443 236677 44 4677888999999999986
|
| >2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.7e-07 Score=80.24 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=65.1
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... ..++||.+...+. ++.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 6 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 69 (229)
T 2y7i_A 6 RTLHFGTS--ATYAPYEFVDADN----------KIVGFDIDVANAVCKEMQAE--CSFTNQ--SFDSLIPSLRFKKFDAV 69 (229)
T ss_dssp CEEEEEEC--CCBTTTBEECTTS----------CEESHHHHHHHHHHHHTTCE--EEEEEC--CGGGHHHHHHTTSCSEE
T ss_pred CcEEEEeC--CCcCCceEECCCC----------CCcceeHHHHHHHHHHhCCe--EEEEEc--CHHHHHHHHhCCCceEE
Confidence 45677763 3578998764432 68999999999999999999 777774 79999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
+++++.+.+|++.+.
T Consensus 70 ~~~~~~~~~r~~~~~ 84 (229)
T 2y7i_A 70 IAGMDMTPKREQQVS 84 (229)
T ss_dssp CSSCBCCHHHHTTSE
T ss_pred EecCccCHHHhccee
Confidence 999999999986543
|
| >3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.3e-05 Score=71.04 Aligned_cols=205 Identities=11% Similarity=0.044 Sum_probs=136.1
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~ 111 (550)
.++||++.|.. .........+++.+.++. |+.+.+...++..++....+...+++. .++.+|| .|.......
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~ 76 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL-----KVDLQILAPPGANDVPKQVQFIESALA-TYPSGIATTIPSDTAFS 76 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH-----TCEEEEECCSSSCCHHHHHHHHHHHHH-TCCSEEEECCCCSSTTH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh-----CcEEEEECCCCcCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHH
Confidence 47999999876 444556677888777775 555554332222578777777888887 5788776 455544444
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC--CeEEEEEEEcCCCCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN--WRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~--w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.....+...+||+|..... .+... ..+.+..+..+....+..++++|...+ -++++++..+..........+.+
T Consensus 77 ~~~~~~~~~giPvV~~~~~--~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 77 KSLQRANKLNIPVIAVDTR--PKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp HHHHHHHHHTCCEEEESCC--CSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEcCC--Ccccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 4555667789999998765 22211 112344567888889999999998877 89999998654321114566888
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
++.+++.| +++.... .. . ........++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 153 ~~~l~~~g-~~~~~~~--~~-~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~ 213 (297)
T 3rot_A 153 KTILQDKG-IFFEELD--VG-T----DPNQVQSRVKSYFKIHPETNIIFC--LTSQALDPLGQMLLHPDRY 213 (297)
T ss_dssp HHHHHHTT-CEEEEEE--CC-S----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHSHHHH
T ss_pred HHHHHhcC-CeEEEee--cC-C----ChHHHHHHHHHHHHhCCCCCEEEE--cCCcchHHHHHHHHhcCCc
Confidence 99999999 8876543 11 1 234445556654433 4566554 6677788899999998874
|
| >2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00014 Score=69.63 Aligned_cols=208 Identities=9% Similarity=0.079 Sum_probs=126.9
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH-HHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE-ETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~-~~~ 111 (550)
++.+||+++|.+..+......+++.+.++ . .|+.+. +.++..++....+....++. .++.+||...... ...
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~-~g~~l~--i~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~ 77 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMF---Y-NGVSVE--IRSAGDDNSKQAEDVHYFMD-EGVDLLIISANEAAPMT 77 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTT---S-SSCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSHHHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHH---c-CCcEEE--EeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHH
Confidence 56899999987322222333444444332 1 255554 45666777777777777776 6888887643332 222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC--CCCcchhHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKLA 187 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~~ 187 (550)
.....+...++|+|..... .+.. +.+..+.+++...+..++++|... |.+++++|..... .. ....+
T Consensus 78 ~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~--~~R~~ 148 (325)
T 2x7x_A 78 PIVEEAYQKGIPVILVDRK--ILSD-----KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPA--MERHQ 148 (325)
T ss_dssp HHHHHHHHTTCCEEEESSC--CSSS-----CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHH--HHHHH
T ss_pred HHHHHHHHCCCeEEEeCCC--CCCc-----ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccH--HHHHH
Confidence 3344556679999988754 2211 123356678888888889988664 9999999986533 22 44567
Q ss_pred HHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEE
Q 008863 188 LLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (550)
Q Consensus 188 ~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (550)
.+.+.+++. | +.+.... .... ...+....++++.+. .++.|+. .+...+..+++++++.|+ +.+...
T Consensus 149 Gf~~al~~~pg-~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~aI~~--~nd~~A~g~~~al~~~Gi-p~dv~v 218 (325)
T 2x7x_A 149 GFMAAISKFPD-IKLIDKA-DAAW-----ERGPAEIEMDSMLRRHPKIDAVYA--HNDRIAPGAYQAAKMAGR-EKEMIF 218 (325)
T ss_dssp HHHHHHHTCTE-EEEEEEE-ECTT-----SHHHHHHHHHHHHHHCSCCCEEEE--SSTTHHHHHHHHHHHTTC-TTSSEE
T ss_pred HHHHHHHhCCC-CEEEeee-cCCC-----CHHHHHHHHHHHHHhCCCCCEEEE--CCCchHHHHHHHHHHcCC-CCCeEE
Confidence 788888888 7 7765322 1111 223334445555432 5677765 555677888999999997 333333
Q ss_pred EE
Q 008863 265 IV 266 (550)
Q Consensus 265 i~ 266 (550)
++
T Consensus 219 ig 220 (325)
T 2x7x_A 219 VG 220 (325)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00027 Score=66.83 Aligned_cols=205 Identities=11% Similarity=0.007 Sum_probs=127.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~ 110 (550)
++.+||++.|.. .........+++.+.++. |+.+.+ ..++..++....+...+++. .++.+|| .+..+...
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~-----g~~~~~-~~~~~~~~~~~~~~~~~l~~-~~vdgiii~~~~~~~~ 75 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF-----NLNASQ-VGPSSTDAPQQVKIIEDLIA-RKVDAITIVPNDANVL 75 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT-----TEEEEE-ECCSSSCHHHHHHHHHHHHH-TTCSEEEECCSCHHHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc-----CCEEEE-ECCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHH
Confidence 468999999865 344456667777777765 444432 23466787777777777776 5888766 45544444
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCe-EEEEEEEcCCCCCcchhHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWR-RVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~-~v~ii~~~~~~g~~~~~~~~ 188 (550)
......+...++|+|..... .. . .+.+..+..+....+..++++|.. .|.+ +++++.............+.
T Consensus 76 ~~~~~~~~~~~ipvV~~~~~--~~-~----~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 76 EPVFKKARDAGIVVLTNESP--GQ-P----SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHTTCEEEEESCT--TC-T----TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEecC--CC-C----CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 44445566789999987643 11 1 123445678888888889999876 8887 99988754321101345677
Q ss_pred HHHHHhcCC-CeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQNVS-SSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~~g-~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+++.+++.+ .+++.... +.... ...+....++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 149 f~~~l~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~ 214 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTRR-MPVAE----SVDDSRRTTLDLMKTYPDLKAVVS--FGSNGPIGAGRAVKEKRAK 214 (303)
T ss_dssp HHHHHHHHCTTEEESSSC-BSCTT----CHHHHHHHHHHHHHHCTTEEEEEE--SSTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhCCCCEEEEee-cCCCC----CHHHHHHHHHHHHHhCCCCCEEEE--eCCcchhHHHHHHHhcCCC
Confidence 788887643 04432211 11111 234445566665544 3455554 4556778899999999987
|
| >3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00045 Score=65.33 Aligned_cols=211 Identities=14% Similarity=0.009 Sum_probs=133.9
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
.-+||++.+.. ...-.....+++.+.++. |+.+.+. .++..++....+....++. .++.+||- |.......
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~-~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~ 76 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL-----NVTVEYR-GAAQYDIQEQITVLEQAIA-KNPAGIAISAIDPVELT 76 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH-----TCEEEEE-ECSSSCHHHHHHHHHHHHH-HCCSEEEECCSSTTTTH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc-----CCEEEEe-CCCcCCHHHHHHHHHHHHH-hCCCEEEEcCCCHHHHH
Confidence 46899999876 333446667777777775 5666542 4677788777777777776 47877764 43433333
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
.....+...++|+|..... .+.. +.+..+.++....+..++++|... |.++++++...... ......+.+
T Consensus 77 ~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~-~~~~R~~gf 148 (305)
T 3g1w_A 77 DTINKAVDAGIPIVLFDSG--APDS-----HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQL-NHQERTTGF 148 (305)
T ss_dssp HHHHHHHHTTCCEEEESSC--CTTS-----CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCH-HHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEECCC--CCCC-----ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcc-cHHHHHHHH
Confidence 3445566789999998765 2221 112346788888999999999877 99999999865431 114556778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (550)
++.+++.+ ..+.......... +.......++++.+. ++++|+ +.+...+..+++++++.|+. .+...+..
T Consensus 149 ~~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~-~di~vig~ 220 (305)
T 3g1w_A 149 KETLEAEF-PAIEVIAVEDGRG----DSLHSRRVAHQLLEDYPNLAGIF--ATEANGGVGVGDAVRLESRA-GEIQIISF 220 (305)
T ss_dssp HHHHHHHC-TTEEEEEEEECTT----CHHHHHHHHHHHHHHCTTEEEEE--ESSHHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHHHhhC-CCCEEEEEecCCC----CHHHHHHHHHHHHHhCCCceEEE--ECCCcchhhHHHHHHhcCCC-CCeEEEEe
Confidence 88888766 4443322222111 233444555555443 455554 46777888999999999987 44344443
|
| >3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.6e-05 Score=69.78 Aligned_cols=210 Identities=10% Similarity=0.059 Sum_probs=132.7
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+-+||+++|.. ...-.....+++.+.++. |+.+.+ .++..++....+....+++ .++.+||-.........
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~ 73 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARAR-----GYQLLI--ASSDDQPDSERQLQQLFRA-RRCDALFVASCLPPEDD 73 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECCCCCSSCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHC-----CCEEEE--EeCCCCHHHHHHHHHHHHH-cCCCEEEEecCccccHH
Confidence 35799999875 233345556666666553 566554 4566677666666667765 57877774322211123
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
....+...++|+|..... .+. .. +..+..+....+..++++|...|.++++++.............+.+.+.
T Consensus 74 ~~~~~~~~~iPvV~~~~~--~~~---~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 145 (272)
T 3o74_A 74 SYRELQDKGLPVIAIDRR--LDP---AH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEA 145 (272)
T ss_dssp HHHHHHHTTCCEEEESSC--CCT---TT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEccC--CCc---cc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHH
Confidence 334556679999987765 221 11 2346678888889999999989999999998765321114567788899
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.| +.+........ +..+....++++.+. .++.|+. .+...+..+++++++.|+.+.+...++.+
T Consensus 146 l~~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 146 LQGYT-GEVRRYQGEAF------SRECGQRLMQQLIDDLGGLPDALVT--TSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTTCC-SEEEEEEESSS------SHHHHHHHHHHHHHHHTSCCSEEEE--SSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHHcC-CChheeecCCC------CHHHHHHHHHHHHhcCCCCCcEEEE--eCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 99999 87654332111 223444445554433 3677665 66778889999999999844444444433
|
| >2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-05 Score=72.74 Aligned_cols=202 Identities=9% Similarity=0.081 Sum_probs=124.7
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
++.+||+++|.+.........+++.++++. |+.+.+ .++..++....+....++. .++.+||..........
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~ 78 (288)
T 2qu7_A 7 RSNIIAFIVPDQNPFFTEVLTEISHECQKH-----HLHVAV--ASSEENEDKQQDLIETFVS-QNVSAIILVPVKSKFQM 78 (288)
T ss_dssp CEEEEEEEESSCCHHHHHHHHHHHHHHGGG-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTEEEEEECCSSSCCCC
T ss_pred CCCEEEEEECCCCchHHHHHHHHHHHHHHC-----CCEEEE--EeCCCCHHHHHHHHHHHHH-cCccEEEEecCCCChHH
Confidence 578999999873223334455555555442 566544 5666777666666777775 68998886433221122
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLA 190 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l~ 190 (550)
+..+ .++|+|..... .+. +.+..+..++...+..++++|...|.+++++|..... .. ....+.|.
T Consensus 79 ~~~l---~~iPvV~~~~~--~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~gf~ 145 (288)
T 2qu7_A 79 KREW---LKIPIMTLDRE--LES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTT--IGRKNGYN 145 (288)
T ss_dssp CGGG---GGSCEEEESCC--CSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHH--HHHHHHHH
T ss_pred HHHh---cCCCEEEEecc--cCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCH--HHHHHHHH
Confidence 2222 68999987754 221 1233567788888899999998889999999986533 23 45567788
Q ss_pred HHHhcCCCeEEEEEeec--CCCCCCC-CChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNVSSSEIQSRLVL--PPISSIS-DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~--~~~~~~~-~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+++.| +.+.....+ .. .... ....+-...++++.+.+++.|+. .+...+..+++++++.|+.-
T Consensus 146 ~~l~~~g-~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 213 (288)
T 2qu7_A 146 KAISEFD-LNVNPSLIHYSDQ-QLGTNAQIYSGYEATKTLLSKGIKGIVA--TNHLLLLGALQAIKESEKEI 213 (288)
T ss_dssp HHHHHTT-CCCCGGGEEECCS-SCSHHHHHHHHHHHHHHHHHTTCCEEEE--CSHHHHHHHHHHHHHSSCCB
T ss_pred HHHHHcC-CCCCcceEEeccC-CccccCCHHHHHHHHHHHHhcCCCEEEE--CCcHHHHHHHHHHHHhCCCC
Confidence 8898888 765321111 11 1000 01122233444444337787765 45667788999999999853
|
| >3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00021 Score=67.27 Aligned_cols=200 Identities=11% Similarity=0.179 Sum_probs=125.9
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
+.+||++-+.+...-....+|++-++++.+- .|..+.+.+.|+..++....+.+..+.+ .++.+||.... .....+
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~-~~vDgII~~~~-~~~~~~ 77 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAEEGY--KDDQVKIDFMNSEGDQSKVATMSKQLVA-NGNDLVVGIAT-PAAQGL 77 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHHTTC--CGGGEEEEEEECTTCHHHHHHHHHHHTT-SSCSEEEEESH-HHHHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHHcCC--CCCceEEEEecCCCCHHHHHHHHHHHHh-cCCCEEEECCc-HHHHHH
Confidence 4689988333333334555666655555321 2348888888999999887777777775 68888886432 222233
Q ss_pred HHhhccCCccEEeccCCCCCCccc------CCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCC-CCCcch
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSM------SRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGGDSG 184 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~-~g~~~~ 184 (550)
.. ...++|+|..+.. ++... ......+..+. +...+...+++|... |.+++++|+.+.. .+ ..
T Consensus 78 ~~--~~~~iPvV~~~~~--~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~--~~ 149 (295)
T 3lft_A 78 AS--ATKDLPVIMAAIT--DPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNS--KT 149 (295)
T ss_dssp HH--HCSSSCEEEESCS--CTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHH--HH
T ss_pred HH--cCCCCCEEEEecc--ChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcch--HH
Confidence 32 2478999987654 33211 01112333333 233456667888776 8999999998754 23 45
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
..+.+++.+++.| +.+...... ...+....++++.. ++++|+. ..+ ..+...++++.+.+.
T Consensus 150 r~~g~~~al~~~g-i~~~~~~~~--------~~~~~~~~~~~l~~-~~dai~~-~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 150 QVEEFKAYAEKAG-LTVETFAVP--------STNEIASTVTVMTS-KVDAIWV-PID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHHHTT-CEEEEEEES--------SGGGHHHHHHHHTT-TCSEEEE-CSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CEEEEEecC--------CHHHHHHHHHHHHh-cCCEEEE-CCc-hhHHHHHHHHHHHHH
Confidence 6788999999999 887654322 12466677777764 7888887 554 445556677777764
|
| >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-06 Score=80.74 Aligned_cols=81 Identities=14% Similarity=0.295 Sum_probs=65.3
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|+.. ..++||.+..++. .+.||++||+++|++.+|++ +++++. ..|+.++..|.+|++|+
T Consensus 31 ~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~lg~~--~~~~~~-~~~~~~~~~l~~G~~D~ 95 (267)
T 3mpk_A 31 HPVVKVAVL--NLFAPFTLFRTDE----------QFGGISAAVLQLLQLRTGLD--FEIIGV-DTVEELIAKLRSGEADM 95 (267)
T ss_dssp CSEEEEEEE--TEETTTEECCTTC----------CCBSHHHHHHHHHHHHHCCE--EEEEEE-SSHHHHHHHHHHTSCSE
T ss_pred CCcEEEEeC--CCCCCeEEECCCC----------cEeeeHHHHHHHHHHHHCCe--EEEEec-CCHHHHHHHHHCCCccE
Confidence 355677763 3478998864332 68999999999999999999 777754 36999999999999999
Q ss_pred EeeceeeeeeeeeEEEe
Q 008863 532 NYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~~ 548 (550)
+. +++.|.+|++.+..
T Consensus 96 ~~-~~~~t~~r~~~~~f 111 (267)
T 3mpk_A 96 AG-ALFVNSARESFLSF 111 (267)
T ss_dssp EE-EEECCGGGTTTEEE
T ss_pred Ee-cccCChhhhcceEe
Confidence 64 99999999986653
|
| >2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00021 Score=67.73 Aligned_cols=205 Identities=14% Similarity=0.083 Sum_probs=125.6
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCC-ChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME-TWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~-~s~~~~ 111 (550)
+++||++.|.. ..+......+++.+.++. |+.+. +.++..++....+....++. .++.+||... ......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~l~--~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~ 73 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR-----GITLK--IADGQQKQENQIKAVRSFVA-QGVDAIFIAPVVATGWE 73 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH-----TCEEE--EEECTTCHHHHHHHHHHHHH-HTCSEEEECCSSSSSCH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEEE--EeCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhHH
Confidence 57999999975 334445566777666664 55554 45666777666666777776 4788777533 222112
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC---CeEEEEEEEcCCCCCcchhHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN---WRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~---w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
.....+...++|+|..... .+.... .+++..+..+....+..++++|...+ .+++++|.............+.
T Consensus 74 ~~~~~~~~~~iPvV~~~~~--~~~~~~--~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 74 PVLKEAKDAEIPVFLLDRS--IDVKDK--SLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp HHHHHHHHTTCCEEEESSC--CCCSCG--GGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEecCC--CCCCCc--cceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 2334455679999987754 221110 01234567888888888888887765 7999999875331101445677
Q ss_pred HHHHHhcCCCe-EEEEEeecCCCCCCCCChHHHHHHHHHhhc-----CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 189 LAEALQNVSSS-EIQSRLVLPPISSISDPKEAVRGELKKVQD-----KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 189 l~~~l~~~g~~-~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-----~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+++.+++.| . .+.... .... ...+....++++.+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 150 f~~al~~~g-~~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~v 217 (306)
T 2vk2_A 150 FAEAIKNAP-NIKIIRSQ-SGDF-----TRSKGKEVMESFIKAENNGKNICMVYA--HNDDMVIGAIQAIKEAGLKP 217 (306)
T ss_dssp HHHHTTTCT-TEEEEEEE-ECTT-----CHHHHHHHHHHHHHHTTTTTTCCEEEE--SSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHhhCC-CeEEEEec-cCCC-----cHHHHHHHHHHHHHhCCCCCCeeEEEE--CCchHHHHHHHHHHHcCCCC
Confidence 888888888 5 222211 1111 22333344444433 35677665 56677888999999999863
|
| >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-06 Score=78.24 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=63.7
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
.+++|+.. ..++||.+... . .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~-g----------~~~G~~~dl~~~~~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 65 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQG-D----------LYVGFDVDLWAAIAKELKLD--YELKPM--DFSGIIPALQTKNVDLA 65 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEET-T----------EEESHHHHHHHHHHHHHTCC--EEEEEE--CGGGHHHHHHTTSSSEE
T ss_pred ceEEEEEC--CCCCCeeEecC-C----------cEEEeeHHHHHHHHHHhCCE--EEEEEC--CHHHHHHHHhCCCCCEE
Confidence 45677653 35688987642 2 68999999999999999998 777764 69999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
+++++++.+|++.+.
T Consensus 66 ~~~~~~~~~r~~~~~ 80 (226)
T 1wdn_A 66 LAGITITDERKKAID 80 (226)
T ss_dssp EEEEECCHHHHTTSE
T ss_pred EEcCcCCHHHhCccc
Confidence 999999999986543
|
| >2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00015 Score=68.19 Aligned_cols=198 Identities=7% Similarity=0.030 Sum_probs=124.8
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcC-CChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~~~~~ 112 (550)
.+||+++|.. .........+++.++++. |+.+. +.++..++....+....++. .++.+||.. ........
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~~~ 74 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL-----GYEAT--IFDSQNDTAKESAHFDAIIA-AGYDAIIFNPTDADGSIA 74 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECCSCTTTTHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEE--EeCCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHHHH
Confidence 5799999864 334445667777766653 55554 45667787777777777776 588887753 33222223
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc------CCeE--EEEEEEcCC--CCCc
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY------NWRR--VAAIYEDNV--YGGD 182 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~------~w~~--v~ii~~~~~--~g~~ 182 (550)
....+...++|+|..... .+.. ...++ .+..++...+..++++|... |.++ ++++..... ..
T Consensus 75 ~~~~~~~~~iPvV~~~~~--~~~~--~~~~~--~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~-- 146 (290)
T 2fn9_A 75 NVKRAKEAGIPVFCVDRG--INAR--GLAVA--QIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPT-- 146 (290)
T ss_dssp HHHHHHHTTCCEEEESSC--CSCS--SSSSE--EEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHH--
T ss_pred HHHHHHHCCCeEEEEecC--CCCC--CceEE--EEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchH--
Confidence 334455689999988754 2211 11122 26678888888889988776 7888 666765432 22
Q ss_pred chhHHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 183 SGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 183 ~~~~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
....+.+.+.+++. | +.+.... .... +..+....++++.+. .++.|+. .+...+..+++++++.|+
T Consensus 147 ~~R~~gf~~~l~~~~g-~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 147 WDRSNGFHSVVDQYPE-FKMVAQQ-SAEF-----DRDTAYKVTEQILQAHPEIKAIWC--GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHHTTSTT-EEEEEEE-ECTT-----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCC-CEEEEec-cCCC-----CHHHHHHHHHHHHHhCCCCcEEEE--CCchHHHHHHHHHHHCCC
Confidence 45667788899988 8 7764322 1111 223334455555432 5677665 566677889999999998
|
| >2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* | Back alignment and structure |
|---|
Probab=98.14 E-value=8.5e-05 Score=69.84 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=127.5
Q ss_pred CCcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 32 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
+.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....++. .++.+||-.......
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~ 85 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY-----KYNIIL--SNSDQNMEKELHLLNTMLG-KQVDGIVFMGGNITD 85 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECCSCCCH
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEecCCCCH
Confidence 3578999999864 333345556666665553 666544 4566677666666666765 688877753221122
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC-C--CCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V--YGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~-~--~g~~~~~~~ 187 (550)
..+. .+...++|+|..... .+. .. +..+..++...+..++++|...|.+++++|.... . .. ....+
T Consensus 86 ~~~~-~l~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~ 154 (289)
T 2fep_A 86 EHVA-EFKRSPVPIVLAASV--EEQ---EE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINR--SKKLQ 154 (289)
T ss_dssp HHHH-HHHHSSSCEEEESCC--CTT---CC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHH--TTHHH
T ss_pred HHHH-HHHhcCCCEEEEccc--cCC---CC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccH--HHHHH
Confidence 2233 344679999998754 221 12 2246788888889999999888999999998754 2 22 45678
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+.+++.| +.+.....+.... +..+-...++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 155 Gf~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~G~~v 221 (289)
T 2fep_A 155 GYKRALEEAN-LPFNEQFVAEGDY----TYDSGLEALQHLMSLDKKPTAILS--ATDEMALGIIHAAQDQGLSI 221 (289)
T ss_dssp HHHHHHHHTT-CCCCGGGEEECCS----CHHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHcC-CCCChheEeeCCC----CHHHHHHHHHHHHcCCCCCCEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 8899999888 7543211111111 223444556666543 5666665 56677888999999999853
|
| >2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-06 Score=80.48 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=63.7
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... .++||.+..++. .+.||++||++++++.+|++ .+++++. .|+.++..|.+|++|++
T Consensus 13 ~~l~v~~~---~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~-~~~~~~~--~~~~~~~~l~~g~~D~~ 76 (257)
T 2q88_A 13 GFARIAIA---NEPPFTAVGADG----------KVSGAAPDVAREIFKRLGVA-DVVASIS--EYGAMIPGLQAGRHDAI 76 (257)
T ss_dssp TEEEEEEC---CCTTTCEECTTC----------CEESHHHHHHHHHHHHTTCC-EEEEEEC--CGGGHHHHHHTTSCSEE
T ss_pred CeEEEEcC---CCCCeeEECCCC----------CcccccHHHHHHHHHHcCCC-eeeEEeC--CHHHHHHHHHCCCcCEE
Confidence 45677764 578998764332 68999999999999999986 2555554 49999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
+++++.|.+|++.+.
T Consensus 77 ~~~~~~t~~r~~~~~ 91 (257)
T 2q88_A 77 TAGLFMKPERCAAVA 91 (257)
T ss_dssp CSCCBCCHHHHTTSE
T ss_pred EecccCCHHHHhccc
Confidence 999999999987543
|
| >3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00013 Score=68.95 Aligned_cols=189 Identities=11% Similarity=0.186 Sum_probs=122.7
Q ss_pred CCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 32 ~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+++|||++.-.....-....+||+-+ +++.| .|..+++.+.|.++|+....+.+.++++ +++.+|++. .+..
T Consensus 6 ~~~~~igi~q~~~hp~ld~~~~G~~~~---L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~-~~~DlIiai-~t~a 80 (302)
T 3lkv_A 6 AKTAKVAVSQIVEHPALDATRQGLLDG---LKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVG-ENPDVLVGI-ATPT 80 (302)
T ss_dssp -CCEEEEEEESCCCHHHHHHHHHHHHH---HHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHT-TCCSEEEEE-SHHH
T ss_pred cCCceEEEEEeecChhHHHHHHHHHHH---HHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHh-cCCcEEEEc-CCHH
Confidence 368999998655543334556677544 45554 4678999999999999999999999997 689888863 3344
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCccc------CCCCCeEEEEecCcHHhHHHHHHHHHH-c-CCeEEEEEEEcCCCCC
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSM------SRRWPYLIRMASNDSEQMKCIADLARK-Y-NWRRVAAIYEDNVYGG 181 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~al~~~l~~-~-~w~~v~ii~~~~~~g~ 181 (550)
+.+++. ...++|+|..+.+ +|... ....+++..+. +........+++++ + +.+++++||+...-+
T Consensus 81 a~a~~~--~~~~iPVVf~~v~--dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~- 153 (302)
T 3lkv_A 81 AQALVS--ATKTIPIVFTAVT--DPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEAN- 153 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEES--CTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHH-
T ss_pred HHHHHh--hcCCCCeEEEecC--CcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCccc-
Confidence 444443 3457999877766 55421 11223443332 22223445566655 3 789999999876421
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHH
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~ 243 (550)
.....+.+++.+++.| +++..... . ...+....++.+.. +.+++++ ..+..
T Consensus 154 s~~~~~~~~~~~~~~g-~~~v~~~~-~-------~~~~~~~~~~~l~~-~~d~i~~-~~d~~ 204 (302)
T 3lkv_A 154 AVSLMELLKLSAAKHG-IKLVEATA-L-------KSADVQSATQAIAE-KSDVIYA-LIDNT 204 (302)
T ss_dssp HHHHHHHHHHHHHHTT-CEEEEEEC-S-------SGGGHHHHHHHHHT-TCSEEEE-CSCHH
T ss_pred HHHHHHHHHHHHHHcC-CEEEEEec-C-------ChHHHHHHHHhccC-CeeEEEE-eCCcc
Confidence 1455677888999999 88765432 2 23566666766654 6788888 66554
|
| >1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00035 Score=66.53 Aligned_cols=197 Identities=9% Similarity=-0.005 Sum_probs=124.4
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~ 112 (550)
+||+++|.. ..+......+++.++++. |+++ .+. ++..++....+....++. .++.+|| .|..+.....
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~-----g~~~--~~~~~~~~d~~~q~~~i~~li~-~~vdgiii~~~~~~~~~~ 76 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL-----GIDV--TYDGPTEPSVSGQVQLVNNFVN-QGYDAIIVSAVSPDGLCP 76 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH-----TCEE--EECCCSSCCHHHHHHHHHHHHH-TTCSEEEECCSSSSTTHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh-----CCEE--EEECCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHH
Confidence 799999865 334445667777777765 4444 444 467788777788888887 5888755 5555544344
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH---cCCeEEEEEEEcCC--CCCcchhHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK---YNWRRVAAIYEDNV--YGGDSGKLA 187 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~---~~w~~v~ii~~~~~--~g~~~~~~~ 187 (550)
+...+...+||+|.+... .+.. . ...+....+....+...+++|.. .|.+++++|..... .. ....+
T Consensus 77 ~~~~a~~~gipvV~~d~~--~~~~--~--~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~--~~r~~ 148 (316)
T 1tjy_A 77 ALKRAMQRGVKILTWDSD--TKPE--C--RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQ--NQWVK 148 (316)
T ss_dssp HHHHHHHTTCEEEEESSC--CCGG--G--CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHH--HHHHH
T ss_pred HHHHHHHCcCEEEEecCC--CCCC--C--ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhH--HHHHH
Confidence 455667789999998754 2211 1 12222256777788888888866 57899999985432 22 44566
Q ss_pred HHHHHHhcC--CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 188 LLAEALQNV--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 188 ~l~~~l~~~--g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+.+.+++. + +++..... ... ...+....++++.+. +++.|+. .+...+..+++++++.| .
T Consensus 149 g~~~~l~~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~aI~~--~nD~~A~g~~~al~~~G-~ 213 (316)
T 1tjy_A 149 EAKAKISQEHPG-WEIVTTQF-GYN-----DATKSLQTAEGIIKAYPDLDAIIA--PDANALPAAAQAAENLK-R 213 (316)
T ss_dssp HHHHHHHHHCTT-EEEEEEEE-CTT-----CHHHHHHHHHHHHHHCSSCCEEEE--CSTTHHHHHHHHHHHTT-C
T ss_pred HHHHHHHhhCCC-cEEEEecc-CCC-----CHHHHHHHHHHHHHhCCCCCEEEE--CCCccHHHHHHHHHHcC-C
Confidence 777777654 5 66554321 111 223444555555443 4566554 55667788999999999 5
|
| >3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00019 Score=67.21 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=124.6
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++.+||+++|.. ..+......+++.+.++. |+.+.+ .+...++....+....++. .++.+||.........
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 78 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN-----GYRILL--CNTESDLARSRSCLTLLSG-KMVDGVITMDALSELP 78 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHTHHHHT-TCCSEEEECCCGGGHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCChH
Confidence 567899999854 333345556666665553 666654 4555676655566666665 6888887643322223
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+.. +. .++|+|..... .+. .. +..+..++...+..++++|...|.+++++|.............+.+.+
T Consensus 79 ~~~~-l~-~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 79 ELQN-II-GAFPWVQCAEY--DPL---ST---VSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHH-HH-TTSSEEEESSC--CTT---SS---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHH-Hh-cCCCEEEEccc--cCC---CC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 3333 34 89999998754 221 11 234667888888889999988899999999876432101445677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHH--hhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK--VQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~--i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+. ...-.. +..+....+++ +.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 149 ~l~~~g-~~~~-~~~~~~------~~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~v 210 (285)
T 3c3k_A 149 RLKFHG-LDYS-RISYAE------NLDYMAGKLATFSLLKSAVKPDAIFA--ISDVLAAGAIQALTESGLSI 210 (285)
T ss_dssp HHHHHT-CCCC-EEEECS------SSSHHHHHHHHHHHHSSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcC-CCce-EeecCC------ChHHHHHHHHHHHHHcCCCCCeEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 888888 7654 111111 11233445555 5443 5677665 56677888999999999863
|
| >3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.11 E-value=6.3e-05 Score=72.55 Aligned_cols=205 Identities=10% Similarity=0.075 Sum_probs=132.1
Q ss_pred CcEEEEEEEec--C-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDA--N-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~--~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
.+-+||+++|. . ..+-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||-......
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~ 131 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-----GRQLL--LADGKHSAEEERQAIQYLLD-LRCDAIMIYPRFLS 131 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT-----TCEEE--EEECTTSHHHHHHHHHHHHH-TTCSEEEECCSSSC
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence 56789999997 2 333345556666655553 56554 45566777666666666665 58888775333223
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
...+...+...++|+|..... .+. ...+ .+..++...+...+++|...|.+++++|.............+.|
T Consensus 132 ~~~~~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 132 VDEIDDIIDAHSQPIMVLNRR--LRK---NSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp HHHHHHHHHHCSSCEEEESSC--CSS---SGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEcCC--CCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 345667778889999987765 222 1112 36778888888899999889999999998753321114556778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+++.| +.+.....+.... ...+-...++++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 204 ~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP 269 (338)
T 3dbi_A 204 KDALAQHG-IALNEKLIANGKW----TPASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMKALHERGVAVP 269 (338)
T ss_dssp HHHHHHTT-CCCCGGGEECCCS----SHHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHCC-CCCCcceEEeCCC----CHHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 89999988 6553222222211 233444455555433 5666665 667778889999999998643
|
| >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-06 Score=77.35 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=64.5
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.++++|+. ...++||.+..++. .+.||++||++++++.+|++ +++++. .|..++..|.+|++|+
T Consensus 10 ~~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~ 73 (234)
T 3h7m_A 10 HRTIVVGG--DRDYPPYEFIDQNG----------KPAGYNVELTRAIAEVMGMT--VEFRLG--AWSEMFSALKSGRVDV 73 (234)
T ss_dssp SSCEEEEE--ETEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCC--EEEEEE--CGGGHHHHHHTTSSSE
T ss_pred CCEEEEEe--cCCCCCeEEECCCC----------CEeeeEHHHHHHHHHHcCCc--eEEEeC--CHHHHHHHHhCCCeeE
Confidence 45667776 23578999874432 68999999999999999999 777654 6999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+++++.+.+|++.+.
T Consensus 74 -~~~~~~~~~r~~~~~ 88 (234)
T 3h7m_A 74 -LQGISWSEKRARQID 88 (234)
T ss_dssp -EEEEECCHHHHTTEE
T ss_pred -EEeccCCHhHHhhcC
Confidence 588999999987554
|
| >1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00015 Score=70.04 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=127.5
Q ss_pred CCCcEEEEEEEec--CCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCC--CCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 31 IEEVTKIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN--RDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 31 ~~~~i~IG~i~~~--~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~--~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
...+.+||+++|. +...-.....+++.+.++. |+.+.+...++. .++....+....++. .++.+||-+..
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~ 113 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL-----NINYQLNQVFTRPNADIKQQSLSLMEALK-SKSDYLIFTLD 113 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT-----TCCEEEEEEECCTTCCHHHHHHHHHHHHH-TTCSEEEECCS
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc-----CCeEEEEecCCCCccCHHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 4467899999986 3333345556666666553 677777655555 577666666677776 58888776544
Q ss_pred hHHHHHHHHhhccCCccEEec-cCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cC-CeEEEEEEEcCC-CCCc
Q 008863 107 WEETAVVAEIASRVQVPILSF-AAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YN-WRRVAAIYEDNV-YGGD 182 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~-w~~v~ii~~~~~-~g~~ 182 (550)
..........+...++|+|.. ... .+.......+.+..+..+....+..++++|.. .| .+++++|..... ..
T Consensus 114 ~~~~~~~~~~~~~~~ip~V~~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~-- 189 (342)
T 1jx6_A 114 TTRHRKFVEHVLDSTNTKLILQNIT--TPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYIS-- 189 (342)
T ss_dssp SSTTHHHHHHHHHHCSCEEEEETCC--SCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHH--
T ss_pred hHhHHHHHHHHHHcCCCEEEEecCC--CcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchh--
Confidence 332222333445568998876 332 12111001122345778888888989999876 47 999999986543 22
Q ss_pred chhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 183 ~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
....+.+.+.+++.| . +.....+.... ...+-...++++.+. .++.|+. .+...+..+++++++.|+
T Consensus 190 ~~R~~Gf~~~l~~~~-~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 190 DVRGDTFIHQVNRDN-N-FELQSAYYTKA----TKQSGYDAAKASLAKHPDVDFIYA--CSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHHH-C-CEEEEEECCCS----SHHHHHHHHHHHHHHCCCCSEEEE--SSHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHhCC-C-cEEEEEecCCC----CHHHHHHHHHHHHHhCCCccEEEE--CCChhHHHHHHHHHHcCC
Confidence 455677888888877 5 22211122111 223334445554432 4666665 566778889999999998
|
| >2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-06 Score=78.50 Aligned_cols=77 Identities=16% Similarity=0.345 Sum_probs=61.5
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... +++||.+. ++. ++.||++||++++++.+|++ ++++.. ..|..++..|.+|++|++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~~g----------~~~G~~~dl~~~~~~~~g~~--~~~~~~-~~~~~~~~~l~~g~~D~~ 65 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-NKG----------ELSGFSIDLWRSIATQIGIE--SKLIEY-SSVPELISAIKDNKVNLG 65 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C-------------CBSHHHHHHHHHHHHHTCC--EEEEEC-SSHHHHHHHHHTTSCSEE
T ss_pred ceEEEEec---CCCCeEEe-cCC----------ceEEEeHHHHHHHHHHhCCc--EEEEEc-CCHHHHHHHHHCCCcCEE
Confidence 45778765 46888875 322 68999999999999999998 777664 259999999999999999
Q ss_pred eeceeeeeeeeeEE
Q 008863 533 YHDKLLFKKKKRLC 546 (550)
Q Consensus 533 ~~~~ti~~~r~~~~ 546 (550)
+++++.+.+|++.+
T Consensus 66 ~~~~~~~~~r~~~~ 79 (228)
T 2pyy_A 66 IAAISITAEREQNF 79 (228)
T ss_dssp CSSCBCCHHHHHHS
T ss_pred EeccccCHHHHccc
Confidence 99999999987644
|
| >3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00034 Score=65.71 Aligned_cols=202 Identities=10% Similarity=0.088 Sum_probs=130.4
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
++.+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||- +......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 78 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKAN-----KYEAL--VATSQNSRISEREQILEFVH-LKVDAIFITTLDDVYI 78 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEE--EEECSSCHHHHHHHHHHHHH-TTCSEEEEECSCTTTT
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHc-----CCEEE--EECCCCCHHHHHHHHHHHHH-cCCCEEEEecCChHHH
Confidence 568999999865 333345556666666554 55554 45666777777777777776 57777664 3333333
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-c-CCe-----EEEEEEEcCCCCCcc
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-Y-NWR-----RVAAIYEDNVYGGDS 183 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~-~w~-----~v~ii~~~~~~g~~~ 183 (550)
......+...++|+|..... .+.. +.+..+..+....+..++++|.. . |-+ ++++|..........
T Consensus 79 ~~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~ 151 (293)
T 3l6u_A 79 GSAIEEAKKAGIPVFAIDRM--IRSD-----AVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTN 151 (293)
T ss_dssp HHHHHHHHHTTCCEEEESSC--CCCT-----TCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHH
T ss_pred HHHHHHHHHcCCCEEEecCC--CCCC-----cceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHH
Confidence 34445566779999998765 2211 12345678888888989998866 5 666 999998654321114
Q ss_pred hhHHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 184 GKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 184 ~~~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
...+.+.+.+++. | +.+.....-.. ...+....++++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 152 ~R~~gf~~~l~~~~g-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 152 ERHRGFLKGIENEPT-LSIVDSVSGNY------DPVTSERVMRQVIDSGIPFDAVY--CHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHHTTCTT-EEEEEEEECTT------CHHHHHHHHHHHHHTTCCCSEEE--ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCC-cEEeeeccCCC------CHHHHHHHHHHHHHhCCCCCEEE--ECCchHHHHHHHHHHhCCCC
Confidence 5677888999998 8 87765432111 234444555555543 456665 46777788999999999986
|
| >2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00015 Score=69.58 Aligned_cols=203 Identities=11% Similarity=0.103 Sum_probs=125.7
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....++. .++.+||.........
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 133 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMY-----KYNMIL--ANSDNDVEKEEKVLETFLS-KQVDGIVYMGSSLDEK 133 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECSSCCCHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--EECCCChHHHHHHHHHHHh-CCCCEEEEeCCCCCHH
Confidence 567899999854 333345556666665553 666554 4566677665566666665 6888877532211122
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+. .+...++|+|..... .+. ...+ .+..++...+..++++|...|.+++++|..+..........+.|.+
T Consensus 134 ~~~-~l~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 134 IRT-SLKNSRTPVVLVGTI--DGD---KEIP---SVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHH-HHHHHCCCEEEESCC--CTT---SCSC---EEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHH-HHHhCCCCEEEEccc--cCC---CCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 233 334579999987754 221 1222 4667888888889999988899999999875431101455677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+.....+.... +..+-...++++.+..++.|+. .+...+..+++++++.|+.-
T Consensus 205 al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~ai~~--~~d~~A~g~~~al~~~G~~v 265 (332)
T 2o20_A 205 ALLEAN-IEFDENLVFEGNY----SYEQGKALAERLLERGATSAVV--SHDTVAVGLLSAMMDKGVKV 265 (332)
T ss_dssp HHHHTT-CCCCGGGEECSCC----SHHHHHHHHHHHHHTTCCEEEE--SCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcC-CCCChhhEEeCCC----CHHHHHHHHHHHhccCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 899888 7553221122111 2233334444444337777775 56677888999999999863
|
| >2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00019 Score=67.45 Aligned_cols=202 Identities=10% Similarity=0.058 Sum_probs=126.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....++. .++.+||-........
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~~~ 90 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQR-----GYQLLI--ACSEDQPDNEMRCIEHLLQ-RQVDAIIVSTSLPPEH 90 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECCSSCTTC
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC-----CCEEEE--EcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCCCcH
Confidence 567899999853 333344556666555543 566554 4566677666666666765 5888877532221112
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+...+...++|+|..... .+. +.+..+..++...+..++++|...|.+++++|.............+.+.+
T Consensus 91 ~~~~~~~~~~iPvV~~~~~--~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 162 (293)
T 2iks_A 91 PFYQRWANDPFPIVALDRA--LDR------EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRT 162 (293)
T ss_dssp HHHHTTTTSSSCEEEEESC--CCT------TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCc--cCc------CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHH
Confidence 2334556689999988754 221 11334667888888889999988899999999876432111456677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +...... .... ...+-...++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 163 ~l~~~g-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 223 (293)
T 2iks_A 163 AWKDDP-REVHFLY--ANSY----EREAAAQLFEKWLETHPMPQALFT--TSFALLQGVMDVTLRRDGKL 223 (293)
T ss_dssp HHTTCC-CCEEEEE--ESSS----CHHHHHHHHHHHTTTSCCCSEEEE--SSHHHHHHHHHHHHHHHSSC
T ss_pred HHHHcC-CCccEEE--cCCC----ChhhHHHHHHHHHhcCCCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 999988 6433221 1111 223344556666544 4666665 56677888999999999863
|
| >2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00063 Score=63.55 Aligned_cols=199 Identities=11% Similarity=0.120 Sum_probs=123.3
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~ 112 (550)
.+||+++|.. ..+......+++.+.++. |+.+. +.++..++....+....+++ .++.+||- |........
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~ 73 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKEL-----GYKII--VEDSQNDSSKELSNVEDLIQ-QKVDVLLINPVDSDAVVT 73 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSTTTTHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhc-----CcEEE--EecCCCCHHHHHHHHHHHHH-cCCCEEEEeCCchhhhHH
Confidence 3799999864 333445666777666664 55543 45666777766667777775 58887664 433332222
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc-C-CeEEEEEEEcCCCCCcchhHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N-WRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~-~-w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
....+...++|+|..... .+. . +....+..++...+..++++|... | -+++++|.............+.++
T Consensus 74 ~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~ 146 (283)
T 2ioy_A 74 AIKEANSKNIPVITIDRS--ANG---G--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFD 146 (283)
T ss_dssp HHHHHHHTTCCEEEESSC--CSS---S--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEecCC--CCC---c--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHH
Confidence 334456779999987654 111 1 112245677777888888988665 5 899999986543210134567788
Q ss_pred HHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 191 EALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 191 ~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
+.+++. | +.+..... ... ...+-...++++.+. .++.|+ +.+...+..+++++++.|+
T Consensus 147 ~al~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~ai~--~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 147 EAIAKYPD-IKIVAKQA-ADF-----DRSKGLSVMENILQAQPKIDAVF--AQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp HHHTTCTT-EEEEEEEE-CTT-----CHHHHHHHHHHHHHHCSCCCEEE--ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCC-CEEEeecc-CCC-----CHHHHHHHHHHHHHhCCCccEEE--ECCchHHHHHHHHHHHCCC
Confidence 889887 8 77643221 111 223334445555432 456655 4677788899999999998
|
| >3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00019 Score=67.85 Aligned_cols=213 Identities=10% Similarity=0.004 Sum_probs=130.6
Q ss_pred CCcEEEEEEEecC--CccchhHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHhhhcCCeEEEEc-CCCh
Q 008863 32 EEVTKIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAG-METW 107 (550)
Q Consensus 32 ~~~i~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~-d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s 107 (550)
+++.+||+++|.. ...-.....+++.+.++. +|+.+.+... +...++..-.+....++. .++.+||- +...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~----~g~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~ 80 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY----SDFNISANITHYDPYDYNSFVATSQAVIE-EQPDGVMFAPTVP 80 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT----GGGCEEEEEEEECSSCHHHHHHHHHHHHT-TCCSEEEECCSSG
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHH----HhCCeEEEEEcCCCCCHHHHHHHHHHHHh-cCCCEEEECCCCh
Confidence 3678999999974 334445666776666664 2566776655 455677666666667766 68887774 4444
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCC--eEEEEEEEcC------CC
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNW--RRVAAIYEDN------VY 179 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w--~~v~ii~~~~------~~ 179 (550)
.........+...++|+|..... .+.. +.+-.+.++....+..++++|...+. +++++|.... ..
T Consensus 81 ~~~~~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 81 QYTKGFTDALNELGIPYIYIDSQ--IKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp GGTHHHHHHHHHHTCCEEEESSC--CTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC--CCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 33344455566679999998765 2211 11335678888889999999988877 9999998431 12
Q ss_pred CCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-C-CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 180 GGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-K-QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 180 g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~-~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
. ....+.+.+.+++.| ..+.......... ........++++.+ . .++.|+. ..+. +..+++++++.|+
T Consensus 154 ~--~~R~~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~-~~d~--a~g~~~al~~~g~ 223 (304)
T 3gbv_A 154 Q--ESREIGFRQYMQEHH-PACNILELNLHAD----LNIEDSRMLDDFFREHPDVKHGIT-FNSK--VYIIGEYLQQRRK 223 (304)
T ss_dssp H--HHHHHHHHHHHHHHC-TTSEEEEEEEESS----CSSCHHHHHHHHHHHCTTCCEEEE-SSSC--THHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHHhhC-CCcEEEEeeecCC----CHHHHHHHHHHHHHhCCCeEEEEE-cCcc--hHHHHHHHHHcCC
Confidence 2 455677888888876 4332221111110 11122333343332 2 6778777 5544 7789999999998
Q ss_pred CCCCEEEEEec
Q 008863 258 VGKDSVWIVTN 268 (550)
Q Consensus 258 ~~~~~~~i~~~ 268 (550)
.+...++.+
T Consensus 224 --~di~vig~d 232 (304)
T 3gbv_A 224 --SDFSLIGYD 232 (304)
T ss_dssp --CSCEEEEES
T ss_pred --CCcEEEEeC
Confidence 333344433
|
| >3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.6e-05 Score=69.71 Aligned_cols=203 Identities=14% Similarity=0.070 Sum_probs=123.9
Q ss_pred CcEEEEEEEec-----CCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDA-----NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~-----~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++.+||+++|. +.........+++.+.++. |+.+.+ .++..++....+....+++ .++.+||-....
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-----NYFVLP--FPFSEDRSQIDIYRDLIRS-GNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-----TCEEEE--CCCCSSTTCCHHHHHHHHT-TCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHc-----CCEEEE--EeCCCchHHHHHHHHHHHc-CCCCEEEEeecC
Confidence 35689999986 3344456667777766653 566544 4444444333444555554 688877753221
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
.... ....+...++|+|..... .+. .. +..+..++...+..++++|...|.+++++|.............+
T Consensus 75 ~~~~-~~~~l~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 145 (287)
T 3bbl_A 75 YNDP-RVQFLLKQKFPFVAFGRS--NPD---WD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQ 145 (287)
T ss_dssp TTCH-HHHHHHHTTCCEEEESCC--STT---CC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHH
T ss_pred CCcH-HHHHHHhcCCCEEEECCc--CCC---CC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHH
Confidence 1112 233445679999998754 221 12 22456788888888999987789999999986543110145567
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-C---CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-K---QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+.+++.| +.+.....+.... +..+-...++++.+ . .++.|+. .+...+..+++++++.|+.-
T Consensus 146 Gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~v 214 (287)
T 3bbl_A 146 GYLEAMQTAQ-LPIETGYILRGEG----TFEVGRAMTLHLLDLSPERRPTAIMT--LNDTMAIGAMAAARERGLTI 214 (287)
T ss_dssp HHHHHHHHTT-CCCCGGGEEECCS----SHHHHHHHHHHHHTSCTTTSCSEEEE--SSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHcC-CCCChhhEEeCCC----CHHHHHHHHHHHHhhCCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 7888898888 7543211111111 22344455666654 3 4666665 56677888999999999863
|
| >3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.9e-05 Score=71.56 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=127.7
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++.+||+++|.. ..+-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||-..... ..
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~-~~ 77 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHK-----GYSVL--LANTAEDIVREREAVGQFFE-RRVDGLILAPSEG-EH 77 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECCCSS-CC
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHHH-CCCCEEEEeCCCC-Ch
Confidence 568999999865 223345556666666553 55554 45566677666666666665 6888777433222 23
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... .+. +.+..+..+....+..++++|...|.++++++.............+.+.+
T Consensus 78 ~~~~~~~~~~iPvV~~~~~--~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (291)
T 3egc_A 78 DYLRTELPKTFPIVAVNRE--LRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRA 149 (291)
T ss_dssp HHHHHSSCTTSCEEEESSC--CCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEecc--cCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 3445667789999988765 221 12345678888889999999988899999999876431111456677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+.......... ...+....++++.+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 150 ~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 212 (291)
T 3egc_A 150 AMSAAG-LPVRQEWIAAGGV----RADNGRDGAIKVLTGADRPTALLT--SSHRITEGAMQALNVLGLRY 212 (291)
T ss_dssp HHHHTT-CCCCGGGEEC----------CCHHHHHHHHTC-CCCSEEEE--SSHHHHHHHHHHHHHHTCCB
T ss_pred HHHHcC-CCCCHHHeEeCCC----ChhHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 898888 6543221111111 11122233444443 25666664 67778888999999999863
|
| >3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0002 Score=67.32 Aligned_cols=204 Identities=9% Similarity=0.094 Sum_probs=127.7
Q ss_pred CcEEEEEEEec-----C-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 33 EVTKIGAIVDA-----N-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 33 ~~i~IG~i~~~-----~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
++-+||+++|. . ...-.....+++.+.++. |+.+. +.+...++....+....+++ .++.+||-...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~~ 78 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE-----GYALY--MSTGETEEEIFNGVVKMVQG-RQIGGIILLYS 78 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT-----TCEEE--ECCCCSHHHHHHHHHHHHHT-TCCCEEEESCC
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc-----CCEEE--EEeCCCCHHHHHHHHHHHHc-CCCCEEEEeCC
Confidence 56889999997 3 333445556666666553 55554 45555555444444444444 68888774322
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
.... .....+...++|+|..... .+.. .. +..+..+....+..++++|...|.++++++.............
T Consensus 79 ~~~~-~~~~~l~~~~iPvV~~~~~--~~~~--~~---~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~ 150 (292)
T 3k4h_A 79 REND-RIIQYLHEQNFPFVLIGKP--YDRK--DE---ITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRL 150 (292)
T ss_dssp BTTC-HHHHHHHHTTCCEEEESCC--SSCT--TT---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHH
T ss_pred CCCh-HHHHHHHHCCCCEEEECCC--CCCC--CC---CCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHH
Confidence 2222 3445566779999998765 2211 11 2346788888899999999889999999998764321114556
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+.+++.| +.+.....+.... ...+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 151 ~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 218 (292)
T 3k4h_A 151 AGMSDALKLAD-IVLPKEYILHFDF----SRESGQQAVEELMGLQQPPTAIMA--TDDLIGLGVLSALSKKGFVV 218 (292)
T ss_dssp HHHHHHHHHTT-CCCCGGGEEECCS----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHcC-CCCChheEEecCC----CHHHHHHHHHHHHcCCCCCcEEEE--cChHHHHHHHHHHHHhCCCC
Confidence 77888999888 6543222111111 234445566666554 5666665 66778889999999999863
|
| >3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00017 Score=67.11 Aligned_cols=201 Identities=11% Similarity=0.047 Sum_probs=123.9
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
+-+||+++|.. ...-.....+++.+.++. |+.+.+ .+...++....+....++. .++.+||- +.... .
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgii~~~~~~~-~- 72 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA-----GYQLLL--GYSDYSIEQEEKLLSTFLE-SRPAGVVLFGSEHS-Q- 72 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT-----SCEECC--EECTTCHHHHHHHHHHHHT-SCCCCEEEESSCCC-H-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC-----CCEEEE--EcCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC-H-
Confidence 46899999854 223334556666655543 565544 4555677666666666665 57776553 22221 1
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... .+. +.+..+..+....+..++++|...|.+++++|.............+.+.+
T Consensus 73 ~~~~~l~~~~iPvV~~~~~--~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 73 RTHQLLEASNTPVLEIAEL--SSK------ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp HHHHHHHHHTCCEEEESSS--CSS------SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeec--cCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 2233445579999987654 221 12345778888888889999988899999999876432101455677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+.....+.... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 145 ~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 207 (275)
T 3d8u_A 145 AMIENY-LTPDHFLTTHEAP----SSQLGAEGLAKLLLRDSSLNALVC--SHEEIAIGALFECHRRVLKV 207 (275)
T ss_dssp HHHHTT-CCCCCEEECSSCC----CHHHHHHHHHHHHTTCTTCCEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcC-CCCCccEEEeCCC----ChhHHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCC
Confidence 898888 6543322221111 233444555655543 4677665 56677888999999999863
|
| >3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00066 Score=64.44 Aligned_cols=202 Identities=10% Similarity=-0.003 Sum_probs=129.7
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
..+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||- +.......
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~ 73 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL-----GAKVF--VQSANGNEETQMSQIENMIN-RGVDVLVIIPYNGQVLS 73 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT-----SCEEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEEECSSTTSCH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEE--EECCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhhH
Confidence 45899999864 445556778887777774 55554 45667777777777777776 57877764 43333333
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH-HcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~-~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.....+...++|+|..... .+. ... ...+..+....+..++++|. ..|-+++++|.............+.++
T Consensus 74 ~~~~~~~~~~iPvV~~~~~--~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 74 NVVKEAKQEGIKVLAYDRM--IND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp HHHHHHHTTTCEEEEESSC--CTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEECCc--CCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 4455667789999998765 222 111 13456788888999999987 899999999986543211134556777
Q ss_pred HHHhcC----CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc---CCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 191 EALQNV----SSSEIQSRLVLPPISSISDPKEAVRGELKKVQD---KQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 191 ~~l~~~----g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~---~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+.+++. + +.+......... ........++++.+ ..++.|+. .+...+..+++++++.|+.
T Consensus 147 ~~l~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGK-IKVVGDQWVDGW-----LPENALKIMENALTANNNKIDAVVA--SNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTS-EEEEEEEECGGG-----CHHHHHHHHHHHHHHTTTCCCEEEE--SSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCC-EEEEeeccCCCc-----CHHHHHHHHHHHHHhCCCCeeEEEE--CCCchHHHHHHHHHHcCCC
Confidence 777765 6 666543321111 22333444444443 35666654 5677888999999999986
|
| >3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.02 E-value=8.1e-05 Score=70.01 Aligned_cols=201 Identities=16% Similarity=0.113 Sum_probs=115.5
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+. +++..++....+....++. .++.+||........
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~-~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~- 78 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKN-----GYNLIIV-YSGSADPEEQKHALLTAIE-RPVMGILLLSIALTD- 78 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTT-----TCEEEEE-C----------CHHHHHHS-SCCSEEEEESCC----
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCeEEEE-eCCCCCHHHHHHHHHHHHh-cCCCEEEEecccCCH-
Confidence 467899999854 333344555555555442 5666543 1555555444455556665 578877753222222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (550)
.....+...++|+|..... .+. + +..+..++...+..++++|...|.+++++|..... .. ....+.+
T Consensus 79 ~~~~~l~~~~iPvV~~~~~--~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~gf 147 (290)
T 3clk_A 79 DNLQLLQSSDVPYCFLSMG--FDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTG--RKRLAGY 147 (290)
T ss_dssp -CHHHHHCC--CEEEESCC----C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTH--HHHHHHH
T ss_pred HHHHHHHhCCCCEEEEcCC--CCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcch--HHHHHHH
Confidence 2233455689999997754 221 1 23467888888899999998889999999986532 33 5667888
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+++.| +.+.....+.... ...+-...++++.+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 148 ~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 211 (290)
T 3clk_A 148 KKALKEAN-IAINQEWIKPGDY----SYTSGEQAMKAFGKNTDLTGIIA--ASDMTAIGILNQASSFGIEV 211 (290)
T ss_dssp HHHHHHTT-CCCCGGGEECCCS----SHHHHHHHHHHHCTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcC-CCCCcceEEcCCC----ChhhHHHHHHHHhccCCCcEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 89999888 7653211121111 22334445555553 45677665 56667888999999999863
|
| >2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=5.1e-06 Score=77.52 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=65.3
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
..+++|... ..++||.+. ++. .+.||.+||++++++.+|++ +++++.+ |..++..|.+|++|+
T Consensus 41 ~~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~~dl~~~i~~~~g~~--v~~~~~~--~~~~~~~l~~G~~D~ 103 (272)
T 2pvu_A 41 KKKVVVGTD--AAFAPFEYM-QKG----------KIVGFDVDLLDAVMKAAGLD--YELKNIG--WDPLFASLQSKEVDM 103 (272)
T ss_dssp CCCEEEEEC--CCBTTTBEE-ETT----------EEESHHHHHHHHHHHHHTCC--EEEEECC--HHHHHHHHHHTSSSE
T ss_pred CCeEEEEEC--CCCCCeEEe-cCC----------eEEEEHHHHHHHHHHHhCCc--eEEEECC--HHHHHHHHhCCCCCE
Confidence 456788764 357899876 322 68999999999999999998 7777754 999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
++++++++.+|++.+.
T Consensus 104 ~~~~~~~~~~r~~~~~ 119 (272)
T 2pvu_A 104 GISGITITDERKQSYD 119 (272)
T ss_dssp ECSSCBCCHHHHTTEE
T ss_pred EEeCCcCCHHHHhcCc
Confidence 9999999999976544
|
| >3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00064 Score=63.72 Aligned_cols=200 Identities=13% Similarity=0.120 Sum_probs=125.4
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
++-+||++++.+...-.....+++.+.++. |+.+.+...+...+ -.+....++. .++.+||-.........
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~---~~~~~~~l~~-~~vdgiIi~~~~~~~~~ 81 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRR-----GYDVMLSAVAPSRA---EKVAVQALMR-ERCEAAILLGTRFDTDE 81 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHT-----TCEEEEEEEBTTBC---HHHHHHHHTT-TTEEEEEEETCCCCHHH
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHH---HHHHHHHHHh-CCCCEEEEECCCCCHHH
Confidence 567899999444444445556666666553 67776655543332 3344455555 68888774322222233
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (550)
+. .+.. ++|+|..... .+. .. +-.+..+....+...+++|...|.++++++...... ......+.+.+.
T Consensus 82 ~~-~~~~-~iPvV~i~~~--~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~-~~~~R~~Gf~~a 150 (289)
T 3k9c_A 82 LG-ALAD-RVPALVVARA--SGL---PG---VGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAP-GGADRRAGFLAA 150 (289)
T ss_dssp HH-HHHT-TSCEEEESSC--CSS---TT---SEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTST-THHHHHHHHHHH
T ss_pred HH-HHHc-CCCEEEEcCC--CCC---CC---CCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCc-cHHHHHHHHHHH
Confidence 33 3445 9999988765 221 12 234677888888999999988999999999876543 225667889999
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+++.| +.+.... +.... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 151 l~~~g-~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP 212 (289)
T 3k9c_A 151 MDRHG-LSASATV-VTGGT----TETEGAEGMHTLLEMPTPPTAVVA--FNDRCATGVLDLLVRSGRDVP 212 (289)
T ss_dssp HHHTT-CGGGEEE-ECCCS----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHCC-CCCCccE-EECCC----CHHHHHHHHHHHHcCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 99988 7533222 22211 334444556666543 5666654 677788899999999998643
|
| >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00024 Score=68.24 Aligned_cols=200 Identities=11% Similarity=0.116 Sum_probs=125.2
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++. .++.+||.........
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 130 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMY-----KYNIIL--SNSDQNQDKELHLLNNMLG-KQVDGIIFMSGNVTEE 130 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHH-----TCEEEE--EECCSHHHHHHHHHHHTSC-CSSCCEEECCSSCCHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCcEEEEecCCCCHH
Confidence 568999999853 344456667777777664 566554 4555555555555556654 6888777532222222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC-C--CCCcchhHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V--YGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~-~--~g~~~~~~~~ 188 (550)
....+...++|+|..... .+. ...+ .+..++...+..++++|...|.+++++|.... . .. ....+.
T Consensus 131 -~~~~l~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~G 199 (332)
T 2hsg_A 131 -HVEELKKSPVPVVLAASI--EST---NQIP---SVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINH--AKKVKG 199 (332)
T ss_dssp -HHHHHTTSSSCEEEESCC--CSC---TTSC---EEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHH--TTHHHH
T ss_pred -HHHHHHhCCCCEEEEccc--cCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccH--HHHHHH
Confidence 333455679999987754 221 1222 45677788888889999888999999998764 2 22 456788
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+.+.+++.| +.+.....+.... ...+-...++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 200 f~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~ 264 (332)
T 2hsg_A 200 YKRALTESG-LPVRDSYIVEGDY----TYDSGIEAVEKLLEEDEKPTAIFV--GTDEMALGVIHGAQDRGLN 264 (332)
T ss_dssp HHHHHHTTT-CCCCGGGEEECCS----SHHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcC-CCCChheEEeCCC----CHHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHHHHcCCC
Confidence 999999988 7543211111111 223334455555543 5677665 5677788899999999985
|
| >2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=97.95 E-value=9.7e-05 Score=69.46 Aligned_cols=203 Identities=9% Similarity=0.038 Sum_probs=122.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHH---HHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAAT---AAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~---~~~~li~~~~v~aiiG~~~s~ 108 (550)
++.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+ ....++. .++.+||-.....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~ 78 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV-----HRHVVV--ATGCGESTPREQALEAVRFLIG-RDCDGVVVISHDL 78 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT-----TCEEEE--ECCCSSSCHHHHHHHHHHHHHH-TTCSEEEECCSSS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC-----CCEEEE--EeCCCchhhhhhHHHHHHHHHh-cCccEEEEecCCC
Confidence 467899999864 333345556666665553 666554 444445444444 4555655 5888777532222
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
....+ ..+...++|+|..... .+. . .+..+..+....+..++++|...|.+++++|.............+.
T Consensus 79 ~~~~~-~~l~~~~iPvV~~~~~--~~~---~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 79 HDEDL-DELHRMHPKMVFLNRA--FDA---L---PDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp CHHHH-HHHHHHCSSEEEESSC--CTT---S---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CHHHH-HHHhhcCCCEEEEccc--cCC---C---CCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 22223 3344579999998754 221 1 1224667888888889999988899999999876431101455677
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+.+++.| +.+.....+.... +..+-...++++.+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 150 f~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~G~~v 215 (290)
T 2rgy_A 150 FFDELARHG-IARDSVPLIESDF----SPEGGYAATCQLLESKAPFTGLFC--ANDTMAVSALARFQQLGISV 215 (290)
T ss_dssp HHHHHHTTT-CCGGGSCEEECCS----SHHHHHHHHHHHHHHTCCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcC-CCCCcccEEecCC----ChhHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCC
Confidence 888899888 6543211111111 22333344454443 35677765 56677888999999999863
|
| >1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0004 Score=66.87 Aligned_cols=205 Identities=12% Similarity=0.094 Sum_probs=124.8
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. .........+++.+.++. |+.+.+ .++..++....+....++. .++.+||-........
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 128 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-----GYTLIL--GNAWNNLEKQRAYLSMMAQ-KRVDGLLVMCSEYPEP 128 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEECCSCCCHH
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHc-CCCCEEEEeCCCCChH
Confidence 467899999864 333345556666665553 666654 5666677666566666665 6888877422211111
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+..+....++|+|..... .+.. ++...+..++...+..++++|...|.+++++|.............+.+.+
T Consensus 129 ~~~~l~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~ 201 (340)
T 1qpz_A 129 LLAMLEEYRHIPMVVMDWG--EAKA-----DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMK 201 (340)
T ss_dssp HHHHHHTTTTSCEEEEEES--SCCC-----SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEEecc--cCCC-----CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHH
Confidence 1222223368999987754 2211 11234677888888888999888899999999865331101455677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.+.....+.... ...+-...++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 202 al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~v 264 (340)
T 1qpz_A 202 AMEEAM-IKVPESWIVQGDF----EPESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALCAADEMGLRV 264 (340)
T ss_dssp HHHHTT-CCCCGGGBCCCCS----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHCC-CCCChhheEeCCC----CHHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 999888 6543221121111 223334455565543 5677665 56677888999999999863
|
| >2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.7e-05 Score=69.16 Aligned_cols=199 Identities=10% Similarity=0.034 Sum_probs=113.6
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||........ ...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~-~~~ 71 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ-----RYDLA--LFPILSLARLKRYLENTTLA-YLTDGLILASYDLTE-RFE 71 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG-----TCEEE--ECCCCSCCCCC----------CCCSEEEEESCCCC-----
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCchhhHHHHHHHHHh-CCCCEEEEecCCCCH-HHH
Confidence 489999853 223334445555554443 55554 34554444333444455554 578777653222122 233
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC-C---CCCcc-hhHHHH
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V---YGGDS-GKLALL 189 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~-~---~g~~~-~~~~~l 189 (550)
..+...++|+|..... .+ + +..+..+....+..++++|...|.+++++|.... . ..... ...+.+
T Consensus 72 ~~~~~~~iPvV~~~~~--~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 72 EGRLPTERPVVLVDAQ--NP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp --CCSCSSCEEEESSC--CT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHhhcCCCEEEEecc--CC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 4556689999998754 21 1 3456778888889999999888999999998764 3 21114 567788
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+++.| +.+.....+.... +..+....++++.+. .++.|+ +.+...+..+++++++.|+.-+
T Consensus 142 ~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~vP 207 (276)
T 2h0a_A 142 QEALKEAG-RPFSPDRLYITRH----SQEGGRLALRHFLEKASPPLNVF--AGADQVALGVLEEAVRLGLTPG 207 (276)
T ss_dssp HHHHHHTT-CCCCGGGEEEECS----SHHHHHHHHHHHHTTCCSSEEEE--CSSHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHcC-CCCChHHeeecCC----ChHHHHHHHHHHHhCCCCCCEEE--ECCcHHHHHHHHHHHHcCCCCC
Confidence 89999988 6543211111111 223444556666554 356655 5677788899999999998643
|
| >3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00017 Score=67.96 Aligned_cols=202 Identities=9% Similarity=0.053 Sum_probs=122.8
Q ss_pred CcEEEEEEEecC-----CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCC
Q 008863 33 EVTKIGAIVDAN-----SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-MET 106 (550)
Q Consensus 33 ~~i~IG~i~~~~-----~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~ 106 (550)
++-+||+++|.. ...-.....+++.+.++. |+.+.+...+..... ....+++...++.+||- +..
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~----~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-----GLDLLLIPDEPGEKY----QSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-----TCEEEEEEECTTCCC----HHHHHHHHHTCCSEEEECSCC
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC-----CCEEEEEeCCChhhH----HHHHHHHHcCCCCEEEEeCCC
Confidence 567899999832 223334555555555543 677777655432222 22333443357777664 322
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
... .....+...++|+|..... .+. .. +-.+..+....+...+++|...|.+++++|.............
T Consensus 76 ~~~--~~~~~l~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 76 PED--FRLQYLQKQNFPFLALGRS--HLP---KP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp SSC--HHHHHHHHTTCCEEEESCC--CCS---SC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCh--HHHHHHHhCCCCEEEECCC--CCC---CC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 222 3344566779999987754 111 12 3346778888889999999889999999998765421114567
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+.+++.| +.+.......... +..+....++++.+. .++.|+. ++...+..+++++++.|+.-+
T Consensus 146 ~Gf~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP 214 (294)
T 3qk7_A 146 QGYVQTMSEAG-LMPLAGYLQKADP----TRPGGYLAASRLLALEVPPTAIIT--DCNMLGDGVASALDKAGLLGG 214 (294)
T ss_dssp HHHHHHHHTTT-CCCCTTCEEEECS----SHHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHHHHTTCSST
T ss_pred HHHHHHHHHCC-CCCChhHeecCCC----CHHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCC
Confidence 78889999988 6542211111111 223444455555543 5666664 677788899999999998643
|
| >3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00023 Score=66.82 Aligned_cols=203 Identities=8% Similarity=0.028 Sum_probs=122.1
Q ss_pred CcEEEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChH
Q 008863 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~ 108 (550)
++-+||+++|... ..-.....+++.+.++ .|+.+.+. +...+.... ....+++...++.+||- +....
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-----~g~~~~~~--~~~~~~~~~-~~~~~~l~~~~vdgiIi~~~~~~ 78 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST-----TQYHLVVT--PHIHAKDSM-VPIRYILETGSADGVIISKIEPN 78 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT-----SSCEEEEC--CBSSGGGTT-HHHHHHHHHTCCSEEEEESCCTT
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH-----cCCEEEEe--cCCcchhHH-HHHHHHHHcCCccEEEEecCCCC
Confidence 5688999999653 2223344444443333 26666554 333333222 23333343356766653 22211
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
. .....+...++|+|..... .+. .. +-.+..+....+..++++|...|.+++++|.............+.
T Consensus 79 -~-~~~~~l~~~~iPvV~i~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 79 -D-PRVRFMTERNMPFVTHGRS--DMG---IE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp -C-HHHHHHHHTTCCEEEESCC--CSS---CC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred -c-HHHHHHhhCCCCEEEECCc--CCC---CC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 1 2334556689999987754 221 12 234677888889999999988999999999876432111456678
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+++.| +.+.....+.... ...+....++++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 149 f~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP 215 (288)
T 3gv0_A 149 FNRGIRDFG-LTEFPIDAVTIET----PLEKIRDFGQRLMQSSDRPDGIVS--ISGSSTIALVAGFEAAGVKIG 215 (288)
T ss_dssp HHHHHHHTT-CEECCCCSCCTTS----CHHHHHHHHHHHTTSSSCCSEEEE--SCHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHcC-CCcchhheecccc----chHHHHHHHHHHHhCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCCC
Confidence 889999998 7664332222211 334455666666654 4666654 667778889999999998643
|
| >3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00022 Score=67.53 Aligned_cols=201 Identities=15% Similarity=0.151 Sum_probs=125.6
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-+||+++|.. ...-.....+++.+.++. |+.+.+ .++..++....+....++. .++.+||-........
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~ 85 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGH-----STDVLL--GQIDAPPRGTQQLSRLVSE-GRVDGVLLQRREDFDD 85 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHT-----TCCEEE--EECCSTTHHHHHHHHHHHS-CSSSEEEECCCTTCCH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCcEEEEecCCCCcH
Confidence 567899999865 334456667777666664 566554 4555566555555556655 6888777532222222
Q ss_pred -HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 -VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 -~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
.+..+. . ++|+|..... .+. ..+ .+..+....+...+++|...|.+++++|.............+.+.
T Consensus 86 ~~~~~l~-~-~iPvV~i~~~--~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (303)
T 3kke_A 86 DMLAAVL-E-GVPAVTINSR--VPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYL 154 (303)
T ss_dssp HHHHHHH-T-TSCEEEESCC--CTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHH
T ss_pred HHHHHHh-C-CCCEEEECCc--CCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHH
Confidence 344444 4 9999998765 221 223 356788888888999998899999999986543211145677788
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHh-----hcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV-----QDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i-----~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+++.| +.+.......... +..+-...++++ .+. .++.|+. .+...+..+++++++.|+.-
T Consensus 155 ~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~v 223 (303)
T 3kke_A 155 ETLASAG-LRSEAAWVVDAGW----EADAGSAALNTLYRGANLGKPDGPTAVVV--ASVNAAVGALSTALRLGLRV 223 (303)
T ss_dssp HHHHHTT-CCCCGGGEEECCS----SHHHHHHHHHHHHHHHCTTSTTSCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcC-CCCCcceEEecCC----ChHHHHHHHHHhcchhhhcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 8999988 6543211111111 233444556666 443 5666665 66778888999999999864
|
| >8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0011 Score=62.69 Aligned_cols=207 Identities=9% Similarity=-0.025 Sum_probs=127.3
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (550)
+++||+++|.. ..+-.....+++.+.++. |+.+ .+.++ .++....+....++. .++.+||- |.......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~-~~~~~~~~~i~~l~~-~~vdgiii~~~~~~~~~ 72 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL-----GFEV--IKIAV-PDGEKTLNAIDSLAA-SGAKGFVICTPDPKLGS 72 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TEEE--EEEEC-CSHHHHHHHHHHHHH-TTCCEEEEECSCGGGHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc-----CCEE--EEeCC-CCHHHHHHHHHHHHH-cCCCEEEEeCCCchhhH
Confidence 68999999865 334456667777777765 5555 44555 477777777788887 57887764 44444445
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH-HcCCe-----EEEEEE-EcCCCCCcch
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWR-----RVAAIY-EDNVYGGDSG 184 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~-~~~w~-----~v~ii~-~~~~~g~~~~ 184 (550)
.....+...++|+|..... .+.......+.+..+..+....+...+++|. +.+-+ +++++. ..........
T Consensus 73 ~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 73 AIVAKARGYDMKVIAVDDQ--FVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHTTCEEEEESSC--CBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred HHHHHHHHCCCcEEEeCCC--CCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 5555677789999998754 2222111001223456777777777777764 33433 888886 3332111145
Q ss_pred hHHHHHHHHhcCCCeE---EEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeE-EEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 185 KLALLAEALQNVSSSE---IQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRV-FIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~---v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~-ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
..+.+.+.+++.| .. +.... .... +.......++++.+. +.+. +|+ +.+...+..+++++++.|+.
T Consensus 151 R~~Gf~~~l~~~g-~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~a~~i~-~~nD~~A~g~~~al~~~g~~ 222 (306)
T 8abp_A 151 RTTGSMDALKAAG-FPEKQIYQVP-TKSN-----DIPGAFDAANSMLVQHPEVKHWLIV-GMNDSTVLGGVRATEGQGFK 222 (306)
T ss_dssp HHHHHHHHHHHHT-CCGGGEEEEE-CSSS-----SHHHHHHHHHHHHTTCTTCSEEEEE-CSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcC-CCCcEEEeec-cCCC-----ChHHHHHHHHHHHHhCCCCceEEEE-eCCcHHHHHHHHHHHHcCCC
Confidence 5677888888866 42 32221 1111 234445556666554 4555 455 77888889999999999986
Q ss_pred C
Q 008863 259 G 259 (550)
Q Consensus 259 ~ 259 (550)
.
T Consensus 223 v 223 (306)
T 8abp_A 223 A 223 (306)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=6.7e-06 Score=76.30 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=63.7
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
+.+++... ..++||.....+. .+.||++|+++++++.+|++ +++++. .|+.++..|.+|++|++
T Consensus 31 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~ 94 (268)
T 3qax_A 31 RIWIVGTN--ATYPPFEYVDAQG----------EVVGFDIDLAKAISEKLGKQ--LEVREF--AFDALILNLKKHRIDAI 94 (268)
T ss_dssp CEEEEEEC--SCBTTTBEECTTS----------CEESHHHHHHHHHHHHHTCE--EEEEEC--CGGGHHHHHHHTSSSEE
T ss_pred CeEEEEEC--CCCCCceEECCCC----------CEEEEEHHHHHHHHHHhCCe--EEEEec--CHHHHHHHHhCCCccEE
Confidence 34566653 3467888764432 68999999999999999988 777775 79999999999999999
Q ss_pred eeceeeeeeeeeEE
Q 008863 533 YHDKLLFKKKKRLC 546 (550)
Q Consensus 533 ~~~~ti~~~r~~~~ 546 (550)
+++++.+.+|++.+
T Consensus 95 ~~~~~~~~~r~~~~ 108 (268)
T 3qax_A 95 LAGMSITPSRQKEI 108 (268)
T ss_dssp CSCCBCCHHHHTTS
T ss_pred eecCccCHhHhcce
Confidence 99999999997644
|
| >3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.9e-05 Score=70.50 Aligned_cols=196 Identities=10% Similarity=0.025 Sum_probs=121.9
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++-+||+++|.. .........+++.+.++. |+.+.+...+ ++....+....+++ .++.+|| ........
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~---~~~~~~~~~~~l~~-~~vdgiI-~~~~~~~~ 73 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK-----GYRLSVIDSL---TSQAGTDPITSALS-MRPDGII-IAQDIPDF 73 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG-----TCEEEEECSS---SSCSSSCHHHHHHT-TCCSEEE-EESCC---
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC-----CCEEEEEeCC---CchHHHHHHHHHHh-CCCCEEE-ecCCCChh
Confidence 567899999865 334456667776666554 5666554333 33333334445554 5888888 32222222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.+.. .++|+|..... .+. ....+ .+..+....+..++++|...|.++++++....... ....+.+.+
T Consensus 74 ~~~~----~~iPvV~~~~~--~~~--~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~--~~R~~gf~~ 140 (280)
T 3gyb_A 74 TVPD----SLPPFVIAGTR--ITQ--ASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAG--LRRFESFEA 140 (280)
T ss_dssp ---------CCCEEEESCC--CSS--SCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHH--HHHHHHHHH
T ss_pred hHhh----cCCCEEEECCC--CCC--CCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchH--HHHHHHHHH
Confidence 2222 89999998765 211 12223 35678888899999999888999999999765434 667788999
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| ..+.... ..... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 141 ~l~~~~-~~~~~~~-~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 202 (280)
T 3gyb_A 141 TMRAHG-LEPLSND-YLGPA----VEHAGYTETLALLKEHPEVTAIFS--SNDITAIGALGAARELGLRV 202 (280)
T ss_dssp HHHHTT-CCCEECC-CCSCC----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTCCT
T ss_pred HHHHcC-cCCCccc-ccCCC----CHHHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 999988 7654332 22111 233444455555433 4666665 66778889999999999863
|
| >3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00081 Score=62.51 Aligned_cols=205 Identities=14% Similarity=0.126 Sum_probs=123.7
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++-+||+++|.. ...-.....+++.+.++. |+.+.+ .+...++..-.+....+++ .++.+||-..... .
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~--~ 75 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESR-----GYIGVL--FDANADIEREKTLLRAIGS-RGFDGLILQSFSN--P 75 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTT-----TCEEEE--EECTTCHHHHHHHHHHHHT-TTCSEEEEESSCC--H
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEecCCc--H
Confidence 578999999865 222334445555444442 565554 5566676665566666665 5888777432222 3
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l~ 190 (550)
.....+...++|+|..... .+. ...+ .+..+....+..++++|...|.++++++..... ........+.+.
T Consensus 76 ~~~~~l~~~~iPvV~i~~~--~~~---~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~ 147 (276)
T 3jy6_A 76 QTVQEILHQQMPVVSVDRE--MDA---CPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGIL 147 (276)
T ss_dssp HHHHHHHTTSSCEEEESCC--CTT---CSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEecc--cCC---CCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHH
Confidence 4445566789999998765 221 1123 466788888999999999999999999998654 210023445555
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEE
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (550)
+.+++.+ . + .+..... .....+....+.++.. .++.|+. .+...+..+++++++.|+.-+.-+-+
T Consensus 148 ~~l~~~~-~-~----~~~~~~~--~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~v 213 (276)
T 3jy6_A 148 AAAQDVD-V-L----EVSESSY--NHSEVHQRLTQLITQNDQKTVAFA--LKERWLLEFFPNLIISGLIDNQTVTA 213 (276)
T ss_dssp TTCSEEE-E-E----EECSSSC--CHHHHHHHHHHHHHSSSSCEEEEE--SSHHHHHHHSHHHHHSSSCCSSSEEE
T ss_pred HHHHhCC-c-E----EEecccc--CCcHHHHHHHHHHhcCCCCcEEEE--eCcHHHHHHHHHHHHcCCCCCCcEEE
Confidence 5565554 3 1 1221100 0223444444555443 5666654 67788889999999999864333433
|
| >2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A | Back alignment and structure |
|---|
Probab=97.85 E-value=9.3e-06 Score=76.26 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=65.3
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++++|... ..++||.+..++. .+.||.+||++++++.+|++ +++++.+ |+.++..|.+|++|++
T Consensus 57 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~G~~--v~~~~~~--~~~~~~~l~~G~~D~~ 120 (283)
T 2yln_A 57 GTVTVGTE--GTYAPFTYHDKDG----------KLTGYDVEVTRAVAEKLGVK--VEFKETQ--WDSMMAGLKAGRFDVV 120 (283)
T ss_dssp CEEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCE--EEEEECC--GGGHHHHHHHTSCSEE
T ss_pred CeEEEEEC--CCCCCeeEECCCC----------CEeeehHHHHHHHHHHcCCc--eEEEECC--HHHHHHHHHCCCcCEE
Confidence 45677763 2478998875332 68999999999999999998 8887764 9999999999999999
Q ss_pred eeceee-eeeeeeEEE
Q 008863 533 YHDKLL-FKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti-~~~r~~~~~ 547 (550)
++.+++ |.+|++.+.
T Consensus 121 ~~~~~~~t~~r~~~~~ 136 (283)
T 2yln_A 121 ANQVGLTSPERQATFD 136 (283)
T ss_dssp CSSCCCCSHHHHHHEE
T ss_pred EecCccCChhhhcceE
Confidence 999998 999987554
|
| >2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=9.2e-06 Score=76.40 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=62.1
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHh----CC---CCCCeEEEecCCChHHHHHhhh
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDH----LN---YDLPYEFVPHDGVYDDLINGVY 525 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~----l~---f~~~~~~~~~~g~w~Gmi~el~ 525 (550)
++++|... ..++||.+...+. .+.||++||+++|++. +| ++ +++++. .|+.++..|.
T Consensus 17 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~~--~~~~~~~~l~ 80 (287)
T 2vha_A 17 GVIVVGHR--ESSVPFSYYDNQQ----------KVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIPI--TSQNRIPLLQ 80 (287)
T ss_dssp TEEEEEEC--SEETTTEEECSSS----------CEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEEC--CTTTHHHHHH
T ss_pred CeEEEEEc--CCCCCceEECCCC----------CcccccHHHHHHHHHHHHHhcCCCCce--EEEEEC--CHHHHHHHHH
Confidence 44677653 3578998874432 6899999999999976 56 55 777775 6999999999
Q ss_pred cccccEEeeceeeeeeeeeEE
Q 008863 526 DKVNYFNYHDKLLFKKKKRLC 546 (550)
Q Consensus 526 ~~~ad~a~~~~ti~~~r~~~~ 546 (550)
+|++|++++++++|.+|++.+
T Consensus 81 ~g~~D~~~~~~~~t~~r~~~~ 101 (287)
T 2vha_A 81 NGTFDFECGSTTNNVERQKQA 101 (287)
T ss_dssp TTSCSEECSSCBCCHHHHTTC
T ss_pred CCCeeEEeccccCCcchhhcc
Confidence 999999999999999997644
|
| >3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00018 Score=69.07 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=123.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++. .++.+|| .......
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI-~~~~~~~- 128 (330)
T 3ctp_A 59 NSKTIGLMVPNISNPFFNQMASVIEEYAKNK-----GYTLFL--CNTDDDKEKEKTYLEVLQS-HRVAGII-ASRSQCE- 128 (330)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEE-EETCCCS-
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCCEEE-ECCCCCH-
Confidence 567899999864 333345556666665543 666654 4566677666666666765 6888888 4222111
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC--CCCcchhHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (550)
..+...++|+|..... .+. ..+ .+..++...+..++++|...|.+++++|..... .. ....+.|
T Consensus 129 ---~~l~~~~iPvV~~~~~--~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~Gf 194 (330)
T 3ctp_A 129 ---DEYANIDIPVVAFENH--ILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEAT--ELRYKGF 194 (330)
T ss_dssp ---GGGTTCCSCEEEESSC--CCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHH--HHHHHHH
T ss_pred ---HHHHhcCCCEEEEecc--CCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccH--HHHHHHH
Confidence 2345679999997754 221 223 356777788888899998889999999987643 22 4566778
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+++.| +.+. ...+.... ...+-...++++.+ ..++.|+. .+...+..+++++++.|+.-+
T Consensus 195 ~~al~~~g-~~~~-~~~~~~~~----~~~~~~~~~~~ll~~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP 258 (330)
T 3ctp_A 195 LDGARAKD-LEID-FIEFQHDF----QVKMLEEDINSMKDIVNYDGIFV--FNDIAAATVMRALKKRGVSIP 258 (330)
T ss_dssp HHHHHHTT-CCCE-EEECSSSC----CGGGGGCCCTTGGGGGGSSEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcC-CCcc-eeEEcCCC----CHHHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCC
Confidence 88999998 7654 22222111 11111222333333 25677765 556677889999999998643
|
| >3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00041 Score=65.25 Aligned_cols=205 Identities=9% Similarity=0.079 Sum_probs=127.9
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChH---
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWE--- 108 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~--- 108 (550)
.-+||+++|.. ...-.....+++.+.++. |+.+.+ .++..++....+....+++ .++.+||- |..+.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQ-----GYSMLL--TSTNNNPDNERRGLENLLS-QHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TCCSEEEECCSSTTSCC
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHH-CCCCEEEEecccccccC
Confidence 37899999875 334455667777666663 565554 5566677776677777776 58887774 33221
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
........+...++|+|..... .+.. ..+ .+..+....+..++++|...|.++++++...... ......+.
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~~~--~~~~---~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~-~~~~R~~g 157 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMINAS--YAEL---AAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDT-QGVKRMNG 157 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEESSC--CTTC---SSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSH-HHHHHHHH
T ss_pred CcHHHHHHHHhcCCCEEEEecC--cCCC---CCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCc-cHHHHHHH
Confidence 2333444566789999998765 2221 223 3567888889999999988999999999875542 11456777
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--C--CeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--Q--SRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~--~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+++.| +.+.......... ..........++++.+. . ++.|+ +.+...+..+++++++.|+.-+
T Consensus 158 f~~~l~~~g-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~vP 228 (298)
T 3tb6_A 158 FIQAHRERE-LFPSPDMIVTFTT--EEKESKLLEKVKATLEKNSKHMPTAIL--CYNDEIALKVIDMLREMDLKVP 228 (298)
T ss_dssp HHHHHHHTT-CCCCGGGEEEECH--HHHTTHHHHHHHHHHHHTTTSCCSEEE--CSSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHcC-CCCCcceEEEecc--cchhhhHHHHHHHHHhcCCCCCCeEEE--EeCcHHHHHHHHHHHHcCCCCC
Confidence 888999888 6543211111100 00000113334444332 3 56665 4677788899999999998643
|
| >3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00071 Score=62.89 Aligned_cols=195 Identities=9% Similarity=0.056 Sum_probs=115.7
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++.+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||-.... ..
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~~dgiIi~~~~--~~ 76 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH-----GYQVL--IGNSDNDIKKAQGYLATFVS-HNCTGMISTAFN--EN 76 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCCEE--EEECTTCHHHHHHHHHHHHH-TTCSEEEECGGG--HH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHHh-CCCCEEEEecCC--hH
Confidence 567899999864 333345556666555553 55554 45666677666666666665 588877753322 22
Q ss_pred HHHH-hhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 112 VVAE-IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 112 ~v~~-~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
... .+...++|+|..... .+.. . .+..+....+..++++|...|.++++++.............+.+.
T Consensus 77 -~~~~~l~~~~iPvV~~~~~--~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 145 (277)
T 3e61_A 77 -IIENTLTDHHIPFVFIDRI--NNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIK 145 (277)
T ss_dssp -HHHHHHHHC-CCEEEGGGC--C-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHH
T ss_pred -HHHHHHHcCCCCEEEEecc--CCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 233 556779999998865 2211 1 567888888999999998889999999986543211145667788
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc-CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+++.| +.+.. ....... ....+.. ++. ..++.|+. .+...+..+++++++.|+.-+
T Consensus 146 ~~l~~~~-~~~~~-~~~~~~~----~~~~~~~----l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP 204 (277)
T 3e61_A 146 YILDQQR-IDYKM-LEATLLD----NDKKFID----LIKELSIDSIIC--SNDLLAINVLGIVQRYHFKVP 204 (277)
T ss_dssp HHHHC----CEEE-EEGGGGG----SHHHHHH----HHHHHTCCEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcC-CCccc-eecCCCC----HHHHHHH----hhcCCCCCEEEE--CCcHHHHHHHHHHHHcCCCCC
Confidence 9999988 76654 2221111 1122222 333 36777765 567788889999999998643
|
| >1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.7e-05 Score=74.71 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=64.3
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC---CCCCCeEEEecCCChHHHHHhhhcccc
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKVN 529 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l---~f~~~~~~~~~~g~w~Gmi~el~~~~a 529 (550)
++++|... ..++||.+...+. .+.||++||++++++.+ |++ +++++. .|+.++..|..|++
T Consensus 44 ~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~--~~~~~~~~l~~G~~ 107 (292)
T 1xt8_A 44 GVVRIGVF--GDKPPFGYVDEKG----------NNQGYDIALAKRIAKELFGDENK--VQFVLV--EAANRVEFLKSNKV 107 (292)
T ss_dssp SSEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHHSCTTC--EEEEEC--CGGGHHHHHHTTSC
T ss_pred CeEEEEEC--CCCCCeeEECCCC----------CEeeEhHHHHHHHHHHhccCCce--EEEEEc--CHHHHHHHHhCCCe
Confidence 35677763 2468998764322 68999999999999999 999 777765 39999999999999
Q ss_pred cEEeeceeeeeeeeeEEE
Q 008863 530 YFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 530 d~a~~~~ti~~~r~~~~~ 547 (550)
|+++++++++.+|++.+.
T Consensus 108 D~~~~~~~~~~~r~~~~~ 125 (292)
T 1xt8_A 108 DIILANFTQTPQRAEQVD 125 (292)
T ss_dssp SEECSSCBCCHHHHTTEE
T ss_pred eEEeecCCCCcchhccee
Confidence 999999999999986543
|
| >3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0003 Score=65.99 Aligned_cols=202 Identities=9% Similarity=0.056 Sum_probs=124.0
Q ss_pred CcEEEEEEEec--CCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 33 EVTKIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~--~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
++.+||+++|. +...-.....+++-+.++. |+.+.+...+...+. ..+....++ ..++.+||-.......
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~--~~~~~~~l~-~~~vdgiIi~~~~~~~ 81 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQ-----NYNYNVVICPYKTDC--LHLEKGISK-ENSFDAAIIANISNYD 81 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT-----TTCSEEEEEEECTTC--GGGCGGGST-TTCCSEEEESSCCHHH
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHc-----CCeEEEEecCCCchh--HHHHHHHHh-ccCCCEEEEecCCccc
Confidence 57899999993 2334455667777666654 555555443222211 112223333 4688877754333333
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
..+... ...++|+|..... .+ . +-.+..+....+..++++|...|.++++++.............+.+.
T Consensus 82 ~~~~~~-~~~~iPvV~~~~~--~~-----~---~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 150 (289)
T 3g85_A 82 LEYLNK-ASLTLPIILFNRL--SN-----K---YSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFI 150 (289)
T ss_dssp HHHHHH-CCCSSCEEEESCC--CS-----S---SEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHh-ccCCCCEEEECCC--CC-----C---CCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHH
Confidence 333333 4679999998754 22 1 23467888888999999998899999999997643211145677888
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+++.| +.+.....+.... ...+....++++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 151 ~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP 215 (289)
T 3g85_A 151 ETCHKNG-IKISENHIIAAEN----SIHGGVDAAKKLMKLKNTPKALFC--NSDSIALGVISVLNKRQISIP 215 (289)
T ss_dssp HHHHHTT-CBCCGGGEEECCS----SHHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcC-CCCChhheeccCC----CHHHHHHHHHHHHcCCCCCcEEEE--cCCHHHHHHHHHHHHcCCCCC
Confidence 8999988 6543221111111 234445556666554 4666654 677788889999999998643
|
| >3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0013 Score=61.84 Aligned_cols=203 Identities=7% Similarity=0.079 Sum_probs=121.9
Q ss_pred CcEEEEEEEecC------CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCC
Q 008863 33 EVTKIGAIVDAN------SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (550)
Q Consensus 33 ~~i~IG~i~~~~------~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (550)
++-+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....+++ .++.+||-...
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~ 77 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH-----GYGTQ--TTVSNNMNDLMDEVYKMIKQ-RMVDAFILLYS 77 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT-----TCEEE--ECCCCSHHHHHHHHHHHHHT-TCCSEEEESCC
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC-----CCEEE--EEcCCCChHHHHHHHHHHHh-CCcCEEEEcCc
Confidence 567999999642 222233444444444432 56554 45555555444444445554 68887774322
Q ss_pred hHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhH
Q 008863 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 107 s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
... ......+...++|+|..... .+... ...+ .+..+....+...+++|...|.+++++|.............
T Consensus 78 ~~~-~~~~~~l~~~~iPvV~i~~~--~~~~~-~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 150 (295)
T 3hcw_A 78 KEN-DPIKQMLIDESMPFIVIGKP--TSDID-HQFT---HIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRI 150 (295)
T ss_dssp CTT-CHHHHHHHHTTCCEEEESCC--CSSGG-GGSC---EEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHH
T ss_pred ccC-hHHHHHHHhCCCCEEEECCC--Ccccc-CCce---EEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHH
Confidence 211 13344556789999988755 22211 0122 35677788888899999888999999999765421114567
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-----CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-----QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-----~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+.+++.| +.+.... ... ...+....++++.+. .++.|+ +.+...+..+++++++.|+.-+
T Consensus 151 ~Gf~~al~~~g-~~~~~~~-~~~------~~~~~~~~~~~~l~~~~~~~~~~ai~--~~~d~~A~g~~~al~~~g~~vP 219 (295)
T 3hcw_A 151 QGFETVASQFN-LDYQIIE-TSN------EREVILNYMQNLHTRLKDPNIKQAII--SLDAMLHLAILSVLYELNIEIP 219 (295)
T ss_dssp HHHHHHHHHTT-CEEEEEE-ECS------CHHHHHHHHHHHHHHHTCTTSCEEEE--ESSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcC-CCeeEEe-ccC------CHHHHHHHHHHHHhhcccCCCCcEEE--ECChHHHHHHHHHHHHcCCCCC
Confidence 88899999999 8765221 111 223333344444321 566665 4677778899999999998643
|
| >2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.5e-05 Score=75.10 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC---CCCCCeEEEecCCChHHHHHhhhcccc
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKVN 529 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l---~f~~~~~~~~~~g~w~Gmi~el~~~~a 529 (550)
+++||... ..++||.+..++. .+.||.+||++++++.+ |++ +++++.+ |+.++..|.+|++
T Consensus 55 ~~l~vg~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~~~~g~~--v~~~~~~--~~~~~~~l~~G~~ 118 (291)
T 2yjp_A 55 GVIRIGVF--GDKPPFGYVDANG----------KNQGFDVEIAKDLAKDLLGSPDK--VEFVLTE--AANRVEYVRSGKV 118 (291)
T ss_dssp TCEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHHSCGGG--EEEEECC--GGGHHHHHHTTSC
T ss_pred CeEEEEEc--CCCCCceEECCCC----------CEeehHHHHHHHHHHHhccCCce--EEEEEcc--HHHHHHHHhCCCe
Confidence 45678763 3478998765332 68999999999999999 988 7777764 9999999999999
Q ss_pred cEEeeceeeeeeeeeEEE
Q 008863 530 YFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 530 d~a~~~~ti~~~r~~~~~ 547 (550)
|++++.++++.+|++.+.
T Consensus 119 D~~~~~~~~~~~r~~~~~ 136 (291)
T 2yjp_A 119 DLILANFTQTPERAEAVD 136 (291)
T ss_dssp SEECSSCBCCHHHHTTEE
T ss_pred eEEEeCCCCChHHHccce
Confidence 999999999999986554
|
| >4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=74.53 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=65.2
Q ss_pred CeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEe
Q 008863 454 PMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNY 533 (550)
Q Consensus 454 ~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~ 533 (550)
+++|... ..++||....... ++..+.||++||++++++.+|++ +++++. .|..++..|.+|++|+++
T Consensus 40 ~l~v~~~--~~~~P~~~~~~~~-------~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~~ 106 (269)
T 4i62_A 40 KLVVALN--PDFAPFEYQKVVD-------GKNQIVGSDIELAKAIATELGVE--LELSPM--SFDNVLASVQSGKADLAI 106 (269)
T ss_dssp EEEEEEC--SCBTTTBEEEEET-------TEEEEESHHHHHHHHHHHHHTCE--EEEEEC--CHHHHHHHHHTTSCSEEC
T ss_pred eEEEEec--CCCCCceeecccC-------CCCcEeeecHHHHHHHHHHHCCc--eEEEEc--CHHHHHHHHhCCCccEEe
Confidence 4567653 3568888732111 13378999999999999999998 777775 799999999999999999
Q ss_pred eceeeeeeeeeEEEe
Q 008863 534 HDKLLFKKKKRLCLV 548 (550)
Q Consensus 534 ~~~ti~~~r~~~~~~ 548 (550)
++++.+.+|++.+..
T Consensus 107 ~~~~~~~~r~~~~~~ 121 (269)
T 4i62_A 107 SGVSKTDERSKVFDF 121 (269)
T ss_dssp SSCBCCHHHHTTEEE
T ss_pred cCCcCCHhHhhceec
Confidence 999999999876543
|
| >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00054 Score=66.11 Aligned_cols=203 Identities=9% Similarity=0.051 Sum_probs=126.2
Q ss_pred CCcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 32 ~~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
..+-+||+++|.. ..+-.....+++.+.++. |+.+. +.++..++..-.+....++. .++.+||-.......
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~~-~~vdGiIi~~~~~~~ 137 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDT-----ELQPV--VGVTDYLPEKEEKVLYEMLS-WRPSGVIIAGLEHSE 137 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSS-----SSEEE--EEECTTCHHHHHHHHHHHHT-TCCSEEEEECSCCCH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHHh-CCCCEEEEECCCCCH
Confidence 3567899999865 223334445555444332 66664 45666677766666667765 577766642211111
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC--C-CCCcchhHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN--V-YGGDSGKLA 187 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~--~-~g~~~~~~~ 187 (550)
.....+...++|+|..+.. +.. +....+..++...+..++++|...|.+++++|.... . .. ....+
T Consensus 138 -~~~~~l~~~~iPvV~i~~~---~~~-----~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~ 206 (344)
T 3kjx_A 138 -AARAMLDAAGIPVVEIMDS---DGK-----PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRA--RKRFE 206 (344)
T ss_dssp -HHHHHHHHCSSCEEEEEEC---SSC-----CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHH--HHHHH
T ss_pred -HHHHHHHhCCCCEEEEeCC---CCC-----CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccH--HHHHH
Confidence 3344566789999987433 111 122346778888888999999888999999998764 2 22 45567
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.|.+.+++.| +.+.....+.... ....-...++++.+. .++.|+. ++...+..+++++++.|+.-+
T Consensus 207 Gf~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~g~~vP 274 (344)
T 3kjx_A 207 GFTEVLGKNG-VEIEDREFYSGGS----ALAKGREMTQAMLERSPDLDFLYY--SNDMIAAGGLLYLLEQGIDIP 274 (344)
T ss_dssp HHHHHHHHTT-CCCSCEEECSSCC----CHHHHHHHHHHHHHHSTTCCEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHcC-CCCChheEEeCCC----CHHHHHHHHHHHHhcCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCC
Confidence 8889999988 7654333222211 223333444444332 5676664 667788899999999998643
|
| >3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0018 Score=62.54 Aligned_cols=201 Identities=15% Similarity=0.089 Sum_probs=119.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+.+||+++|.. ..+......+++.+.++. |+.+.+ .++..++....+....++. .++.+||-.......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~- 135 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKA-----GLATII--TNSNEDATTMSGSLEFLTS-HGVDGIICVPNEECA- 135 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHT-----TCCEEE--EECTTCHHHHHHHHHHHHH-TTCSCEEECCCGGGH-
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCh-
Confidence 467899999864 233334556666555543 566554 4555666655555666665 578877653332222
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... .+. ....+ .+..++...+..++++|...|.+++++|.............+.|.+
T Consensus 136 ~~~~~l~~~~iPvV~i~~~--~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 136 NQLEDLQKQGMPVVLVDRE--LPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp HHHHHHHHC-CCEEEESSC--CSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEccc--CCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2333445679999987754 221 01223 3567777888889999988899999999865331101455677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC-CeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-SRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +..... +.... ...+-...++++.+.. + .|+ +.+...+..+++++++.|+.-
T Consensus 209 al~~~g-~~~~~v--~~~~~----~~~~~~~~~~~ll~~~~~--ai~-~~nD~~A~g~~~al~~~G~~v 267 (348)
T 3bil_A 209 ACANSK-IGEQLV--FLGGY----EQSVGFEGATKLLDQGAK--TLF-AGDSMMTIGVIEACHKAGLVI 267 (348)
T ss_dssp HHHHTT-CCCCEE--ECCCS----SHHHHHHHHHHHHHTTCS--EEE-ESSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHcC-cCccEE--EcCCC----CHHHHHHHHHHHHcCCCC--EEE-EcChHHHHHHHHHHHHcCCCC
Confidence 898888 622111 11111 2233344555555443 4 444 567778889999999999863
|
| >3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0017 Score=60.27 Aligned_cols=192 Identities=10% Similarity=0.045 Sum_probs=115.2
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
++.+||+++|.. ...-.....+++.+.++. |+.+.+.. ...++.... ++ ++.+||- +.... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~--~~~~~~~~~----~~----~vdgiI~~~~~~~-~ 70 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLALF-----DYEMIVCS--GKKSHLFIP----EK----MVDGAIILDWTFP-T 70 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHTT-----TCEEEEEE--STTTTTCCC----TT----TCSEEEEECTTSC-H
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHHC-----CCeEEEEe--CCCCHHHHh----hc----cccEEEEecCCCC-H
Confidence 567899999864 333344555665555442 66665543 332321100 11 4555443 22211 2
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (550)
..+ ..+...++|+|..... .+. +.+..+..++...+..++++|...|.+++++|..+..........+.+.
T Consensus 71 ~~~-~~l~~~~iPvV~~~~~--~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 71 KEI-EKFAERGHSIVVLDRT--TEH------RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp HHH-HHHHHTTCEEEESSSC--CCS------TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred HHH-HHHHhcCCCEEEEecC--CCC------CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 223 3345579999997754 221 1244577888888888999998889999999987643111145567788
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC---CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.+++.| +.+. .. .... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 142 ~~l~~~g-~~~~-~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~v 203 (277)
T 3cs3_A 142 RELTRFG-IPYE-II-QGDF-----TEPSGYAAAKKILSQPQTEPVDVFA--FNDEMAIGVYKYVAETNYQM 203 (277)
T ss_dssp HHHHHTT-CCEE-EE-ECCS-----SHHHHHHHHHHHTTSCCCSSEEEEE--SSHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHcC-CCee-EE-eCCC-----ChhHHHHHHHHHHhcCCCCCcEEEE--cChHHHHHHHHHHHHcCCCC
Confidence 8899888 7765 21 1111 223444556666544 5666654 66777888999999999863
|
| >2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0072 Score=55.78 Aligned_cols=198 Identities=10% Similarity=0.096 Sum_probs=119.3
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||+++|.. ..+-.....+++.+.++. |+.+.+ .++..++..-.+....++. .++.+||- +.........
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~~~~~~~~ 74 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL-----GYNLVV--LDSQNNPAKELANVQDLTV-RGTKILLINPTDSDAVGNA 74 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEEEE--EECTTCHHHHHHHHHHHTT-TTEEEEEECCSSTTTTHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc-----CcEEEE--eCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHHHHH
Confidence 689998754 333334556666666654 555544 4566676655555666665 68888774 3333322223
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc--CCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+. .. ..-.+..++...+...+++|... +.+++++|.............+.+++
T Consensus 75 ~~~~~~~~iPvV~i~~~--~~~---~~--~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 75 VKMANQANIPVITLDRQ--ATK---GE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHTTCCEEEESSC--CSS---SC--CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEecCC--CCC---Cc--eeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 34455679999987754 221 11 11235677778888888888665 56899999865332111345677888
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.+++.| +.+.... .... +...-...++++.+ ..++.|+. .+...+..+++++++.|+
T Consensus 148 al~~~g-~~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 148 AVAAHK-FNVLASQ-PADF-----DRIKGLNVMQNLLTAHPDVQAVFA--QNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHT-CEEEEEE-ECTT-----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTC
T ss_pred HHhcCC-CEEEEec-CCCC-----CHHHHHHHHHHHHHhCCCccEEEE--CCCcHHHHHHHHHHHcCC
Confidence 888888 8764322 1111 22333344444433 24666554 677788899999999998
|
| >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.003 Score=61.05 Aligned_cols=205 Identities=9% Similarity=0.074 Sum_probs=124.8
Q ss_pred CcEEEEEEEecCC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-+||+++|... ..-.....+++.+.++. |+.+.+ .++..++....+....++. .++.+||-.......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdGiI~~~~~~~~- 139 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG-----GLQLLL--GYTAYSPEREEQLVETMLR-RRPEAMVLSYDGHTE- 139 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TCCSEEEEECSCCCH-
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCCEEEEeCCCCCH-
Confidence 4668999998652 22234445555555443 666644 4566677666666666665 577766642221122
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCC-cchhHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG-DSGKLALLA 190 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~-~~~~~~~l~ 190 (550)
.....+...++|+|..... +.. +....+..+....+..++++|...|.+++++|........ .....+.|.
T Consensus 140 ~~~~~l~~~~iPvV~i~~~---~~~-----~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 140 QTIRLLQRASIPIVEIWEK---PAH-----PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp HHHHHHHHCCSCEEEESSC---CSS-----CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCc---cCC-----CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 3344556789999987533 111 1123567888888888999998899999999998654210 145678899
Q ss_pred HHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+++.| +.+.....+.... ....+-...++++.+ ..++.|+. .+...+..+++++++.|+.-+
T Consensus 212 ~al~~~g-~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP 277 (355)
T 3e3m_A 212 RAMREAG-LNPDQEIRLGAPP---LSIEDGVAAAELILQEYPDTDCIFC--VSDMPAFGLLSRLKSIGVAVP 277 (355)
T ss_dssp HHHHHTT-SCSCCEEEESCSS---CCHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHCC-cCCCccEEEecCC---CCHHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 9999988 7543212121111 022333344444443 25677664 677788889999999998643
|
| >2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.63 E-value=4.3e-05 Score=70.26 Aligned_cols=80 Identities=10% Similarity=0.124 Sum_probs=63.8
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhC---CCCCCeEEEecCCChHHHHHhhhcccc
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKVN 529 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l---~f~~~~~~~~~~g~w~Gmi~el~~~~a 529 (550)
++++|+.. ..++||.+...+. ..+.||++|+++++++.+ |++ +++++. .|+.++..|.+|++
T Consensus 38 ~~l~vg~~--~~~~p~~~~~~~~---------g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~--~~~~~~~~l~~g~~ 102 (259)
T 2v25_A 38 GQLIVGVK--NDVPHYALLDQAT---------GEIKGFEVDVAKLLAKSILGDDKK--IKLVAV--NAKTRGPLLDNGSV 102 (259)
T ss_dssp TCEEEEEC--SEETTTEEEETTT---------TEEESHHHHHHHHHHHHHHSCTTS--EEEEEC--CTTTHHHHHHTTSC
T ss_pred CeEEEEEC--CCCCCeEEEECCC---------CeEEEeeHHHHHHHHHHhcCCCcc--eEEEEc--CHHHHHHHHhCCCC
Confidence 45677753 3468898764221 168999999999999999 888 777775 59999999999999
Q ss_pred cEEeeceeeeeeeeeEEE
Q 008863 530 YFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 530 d~a~~~~ti~~~r~~~~~ 547 (550)
|+++++++.+.+|++.+.
T Consensus 103 D~~~~~~~~~~~~~~~~~ 120 (259)
T 2v25_A 103 DAVIATFTITPERKRIYN 120 (259)
T ss_dssp SEECSSCBCCHHHHTTEE
T ss_pred CEEEecCccCHHHHhcCc
Confidence 999999989988876443
|
| >1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0061 Score=55.65 Aligned_cols=189 Identities=11% Similarity=0.038 Sum_probs=120.3
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~ 112 (550)
-+||+++|.. ...-.....+++.+.++. |+.+.+ .++..++..-.+....++. .++.+||- +......
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdgiI~~~~~~~~~-- 72 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ-----GYDPIM--MESQFSPQLVAEHLGVLKR-RNIDGVVLFGFTGITE-- 72 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH-----TCEEEE--EECTTCHHHHHHHHHHHHT-TTCCEEEEECCTTCCT--
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc-----CCEEEE--EeCCCcHHHHHHHHHHHHh-cCCCEEEEecCccccH--
Confidence 4799999854 233345556666666654 565544 4555666555555556655 57877664 2221111
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEc--C-CCCCcchhHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED--N-VYGGDSGKLALL 189 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~--~-~~g~~~~~~~~l 189 (550)
......++|+|..... . .. +..+..++...+..++++|...|.++++++... + ... ....+.+
T Consensus 73 --~~l~~~~~pvV~~~~~--~-----~~---~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~gf 138 (255)
T 1byk_A 73 --EMLAHWQSSLVLLARD--A-----KG---FASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTG--KRRHEAY 138 (255)
T ss_dssp --TTSGGGSSSEEEESSC--C-----SS---CEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTT--HHHHHHH
T ss_pred --HHHHhcCCCEEEEccc--c-----CC---CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccH--HHHHHHH
Confidence 2234568999887643 1 11 235677888888889999988899999999864 2 233 5667889
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.+.+++.| +.+.. +.... ...+-...++++.+.+++.|+. .+...+..+++++++.|+
T Consensus 139 ~~al~~~g-~~~~~---~~~~~----~~~~~~~~~~~~l~~~~~ai~~--~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 139 LAFCKAHK-LHPVA---ALPGL----AMKQGYENVAKVITPETTALLC--ATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHHHHHTT-CCCEE---ECCCS----CHHHHHHHSGGGCCTTCCEEEE--SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC-CCcce---eecCC----ccchHHHHHHHHhcCCCCEEEE--eChHHHHHHHHHHHHcCC
Confidence 99999988 75431 11111 2233344555655556777665 567788899999999998
|
| >1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.011 Score=55.00 Aligned_cols=213 Identities=8% Similarity=-0.006 Sum_probs=124.9
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEec--CCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD--HNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d--~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
.+||+++|.. ..+-.....+++.+.++. |+.+.+ .+ +..++..-.+....++. .++.+||- +......
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~vdgiIi~~~~~~~~ 73 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTL-----GVSVDI--FASPSEGDFQSQLQLFEDLSN-KNYKGIAFAPLSSVNL 73 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCCEEE--EECSSTTCHHHHHHHHHHHHT-SSEEEEEECCSSSSTT
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHc-----CCEEEE--eCCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChHHH
Confidence 3689999754 223334556666666654 555544 44 56677665566666765 68888774 3332221
Q ss_pred HHHHHhhccCCccEEeccCCCCCCccc--CCCCCeEEEEecCcHHhHHHHHHHHHHc-C--CeEEEEEEEcCCCCCcchh
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSM--SRRWPYLIRMASNDSEQMKCIADLARKY-N--WRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~al~~~l~~~-~--w~~v~ii~~~~~~g~~~~~ 185 (550)
......+...++|+|..... .+... +...++.-.+..+....+...+++|... | .+++++|............
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R 151 (288)
T 1gud_A 74 VMPVARAWKKGIYLVNLDEK--IDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEAR 151 (288)
T ss_dssp HHHHHHHHHTTCEEEEESSC--CCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCC--CCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHH
Confidence 22233445579999987754 22111 0000110246788888888889988766 8 8999999865432111345
Q ss_pred HHHHHHHHhcC-CCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCE
Q 008863 186 LALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (550)
Q Consensus 186 ~~~l~~~l~~~-g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~ 262 (550)
.+.+++.+++. | +.+..... ... ...+-...++++.+. .++.|+. .+...+..+++++++.|+. .+.
T Consensus 152 ~~Gf~~al~~~~g-~~~~~~~~-~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~-~dv 221 (288)
T 1gud_A 152 RNGATEAFKKASQ-IKLVASQP-ADW-----DRIKALDVATNVLQRNPNIKAIYC--ANDTMAMGVAQAVANAGKT-GKV 221 (288)
T ss_dssp HHHHHHHHHTCTT-EEEEEEEE-CTT-----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTCT-TTS
T ss_pred HHHHHHHHHhCCC-cEEEEeec-CCc-----cHHHHHHHHHHHHHhCCCceEEEE--CCCchHHHHHHHHHhcCCC-CCe
Confidence 67788888877 8 76644221 111 223333444544332 4666664 6677888999999999985 343
Q ss_pred EEEEe
Q 008863 263 VWIVT 267 (550)
Q Consensus 263 ~~i~~ 267 (550)
..++-
T Consensus 222 ~vvGf 226 (288)
T 1gud_A 222 LVVGT 226 (288)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44443
|
| >3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0043 Score=59.63 Aligned_cols=201 Identities=12% Similarity=0.041 Sum_probs=119.2
Q ss_pred CCcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 32 EEVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 32 ~~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+++.+||++++-. ..+.....+|++.+.++.+ -++++.+.++..+.....+...++++ +++..||+.. ..
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G-----~~~~~~~~e~~~~~~d~~~~l~~l~~-~g~d~Ii~~g-~~ 96 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG-----DKVETTFLENVAEGADAERSIKRIAR-AGNKLIFTTS-FG 96 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT-----TTEEEEEECSCCTTHHHHHHHHHHHH-TTCSEEEECS-GG
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC-----CceEEEEEecCCCHHHHHHHHHHHHH-CCCCEEEECC-HH
Confidence 3689999999743 2445566777777777763 23666666666555556667777776 6899999864 33
Q ss_pred HHHHHHHhhccC-CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH-H-cCCeEEEEEEEcCCCCCcchh
Q 008863 109 ETAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-K-YNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 109 ~~~~v~~~~~~~-~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~-~-~~w~~v~ii~~~~~~g~~~~~ 185 (550)
...++..++.++ ++|++..... .+. +.+..... +..++.-++-++- + -+-++|++|...... ....+
T Consensus 97 ~~~~~~~vA~~~Pdv~fv~id~~--~~~------~Nv~sv~~-~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p-~v~~~ 166 (356)
T 3s99_A 97 YMDPTVKVAKKFPDVKFEHATGY--KTA------DNMSAYNA-RFYEGRYVQGVIAAKMSKKGIAGYIGSVPVP-EVVQG 166 (356)
T ss_dssp GHHHHHHHHTTCTTSEEEEESCC--CCB------TTEEEEEE-CHHHHHHHHHHHHHHHCSSCEEEEEECCCCH-HHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEecc--ccC------CcEEEEEe-chhHHHHHHHHHHHHhcCCCEEEEECCCccH-HHHHH
Confidence 445566777665 7888876543 111 22333333 2344444444431 1 235799999865421 11345
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
...|...++..+ ..+.....+...- .+...-.+..+.+.+.++++|+. ..+.. .++++|++.|.
T Consensus 167 ~~GF~~G~k~~n-p~i~v~~~~~g~~---~d~~kg~~~a~~l~~~G~DvIf~-~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 167 INSFMLGAQSVN-PDFRVKVIWVNSW---FDPGKEADAAKALIDQGVDIITQ-HTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHTTC-TTCEEEEEECSSS---CCHHHHHHHHHHHHHTTCSEEEE-SSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHC-CCCEEEEEECCCC---CChHHHHHHHHHHHhCCCcEEEE-CCCch---HHHHHHHHcCC
Confidence 677788887765 4433333232210 02233345566666779999988 66553 67899999874
|
| >3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0017 Score=61.35 Aligned_cols=198 Identities=10% Similarity=0.103 Sum_probs=122.8
Q ss_pred CcEEEEEEEecC------CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CC
Q 008863 33 EVTKIGAIVDAN------SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-ME 105 (550)
Q Consensus 33 ~~i~IG~i~~~~------~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~ 105 (550)
.+-+||+++|.. ...-.....+++.+.++. |+.+. +.++..++....+....++. .++.+||- +.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~ 92 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR-----GYSTR--MTVSENSGDLYHEVKTMIQS-KSVDGFILLYS 92 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH-----TCEEE--ECCCSSHHHHHHHHHHHHHT-TCCSEEEESSC
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHHh-CCCCEEEEeCC
Confidence 567899999972 233345556666666654 55554 45555555444444444544 68887774 32
Q ss_pred ChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchh
Q 008863 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (550)
.... .....+...++|+|..... . .....+ .+..+....+...+++|...|.+++++|............
T Consensus 93 ~~~~--~~~~~l~~~~iPvV~i~~~--~---~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 162 (305)
T 3huu_A 93 LKDD--PIEHLLNEFKVPYLIVGKS--L---NYENII---HIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDR 162 (305)
T ss_dssp BTTC--HHHHHHHHTTCCEEEESCC--C---SSTTCC---EEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHH
T ss_pred cCCc--HHHHHHHHcCCCEEEECCC--C---cccCCc---EEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHH
Confidence 2221 3344556779999998765 2 112223 4678888888999999988899999999876542111456
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHh-hc--CCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV-QD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i-~~--~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+.+.+++.| +.+.. . +... ... ....++++ .+ ..++.|+. .+...+..+++++++.|+.-
T Consensus 163 ~~Gf~~~l~~~g-~~~~~-~-~~~~-----~~~-~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~g~~v 228 (305)
T 3huu_A 163 SVGFKQYCDDVK-ISNDC-V-VIKS-----MND-LRDFIKQYCIDASHMPSVIIT--SDVMLNMQLLNVLYEYQLRI 228 (305)
T ss_dssp HHHHHHHHHHTT-CCCCE-E-EECS-----HHH-HHHHC--------CCCSEEEE--SSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHcC-CCccc-E-EecC-----cHH-HHHHHHHhhhcCCCCCCEEEE--CChHHHHHHHHHHHHcCCCC
Confidence 777888999988 76543 2 1111 112 33444555 33 25666664 67778888999999999863
|
| >3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0019 Score=61.99 Aligned_cols=200 Identities=10% Similarity=0.068 Sum_probs=126.2
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
.+-+||+++|.. ...-.....+++.+.++. |+.+. +.++..++..-.+....++. .++.+||- +.....
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~- 131 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA-----GYQML--IGNSHYDAGQELQLLRAYLQ-HRPDGVLITGLSHAE- 131 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHHT-TCCSEEEEECSCCCT-
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHHc-CCCCEEEEeCCCCCH-
Confidence 467899999865 334456667777776663 56654 45666777666666667765 57777663 222211
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALL 189 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l 189 (550)
.....+...++|+|..... .+. +.. .+..+....+..++++|...|.+++++|..... .. ....+.+
T Consensus 132 -~~~~~l~~~~iPvV~~~~~--~~~------~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~--~~R~~Gf 199 (339)
T 3h5o_A 132 -PFERILSQHALPVVYMMDL--ADD------GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERV--MKRLDGY 199 (339)
T ss_dssp -THHHHHHHTTCCEEEEESC--CSS------SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHH--HHHHHHH
T ss_pred -HHHHHHhcCCCCEEEEeec--CCC------CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccH--HHHHHHH
Confidence 3344556789999987543 111 112 567888888899999998889999999987643 22 4456778
Q ss_pred HHHHhcCCCeEEE-EEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 190 AEALQNVSSSEIQ-SRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 190 ~~~l~~~g~~~v~-~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+.+.+.| +... ......... ....-...++++.+. .++.|+. ++...+..+++++++.|+.-+
T Consensus 200 ~~al~~~g-~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP 266 (339)
T 3h5o_A 200 RAALDAAD-CRDAGLEWLDPQPS----SMQMGADMLDRALAERPDCDALFC--CNDDLAIGALARSQQLGIAVP 266 (339)
T ss_dssp HHHHHHTT-CCCGGGEEEECSCC----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHCC-CCCCChheEecCCC----CHHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 88888888 6211 111111111 223334445554432 5676664 667788899999999998643
|
| >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0035 Score=60.04 Aligned_cols=193 Identities=11% Similarity=0.132 Sum_probs=122.1
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
.+-+||+++|.. ..+-.....+++.+.++. |+.+.+. ++.. +....+....++. .++.+||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~--~~~~-~~~~~~~~~~l~~-~~vdGiIi~~~----- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA-----GYQMLVA--EANS-VQAQDVVMESLIS-IQAAGIIHVPV----- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEEEEE--ECCS-HHHHHHHHHHHHH-HTCSEEEECCC-----
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC-----CCEEEEE--CCCC-hHHHHHHHHHHHh-CCCCEEEEcch-----
Confidence 567899999864 333445666777666665 5666554 4444 5444455555555 57887775333
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...++|+|..... .+. ...+ .+..++...+..++++|...|.+++++|.............+.+.+
T Consensus 129 --~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 --VGSIAPEGIPMVQLTRG--ELG---PGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp --TTCCC-CCSCEEEECC---------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred --HHHHhhCCCCEEEECcc--CCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 33456779999998765 221 2223 3567888888889999988899999999976432111456778899
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+++.| +.. ....... +..+....++++.+. .++.|+. .+...+..+++++++.|+.-
T Consensus 199 al~~~g-~~~--~~~~~~~-----~~~~~~~~~~~ll~~~~~~ai~~--~nd~~A~g~~~al~~~G~~v 257 (333)
T 3jvd_A 199 AASIYG-AEV--TFHFGHY-----SVESGEEMAQVVFNNGLPDALIV--ASPRLMAGVMRAFTRLNVRV 257 (333)
T ss_dssp HHHHTT-CEE--EEEECCS-----SHHHHHHHHHHHHHTCCCSEEEE--CCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHCC-CCE--EEecCCC-----CHHHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHcCCCC
Confidence 999999 761 1111111 234444555555544 3666664 67778889999999999864
|
| >3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0071 Score=57.66 Aligned_cols=209 Identities=9% Similarity=-0.004 Sum_probs=127.5
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (550)
+..+||+++|.. ..+-.....+++.+.++. |+.+.+ .++..++..-.+....++. .++.+||- |..+...
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~~~~~~ 73 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEA-----GYKTDL--QYADDDIPNQLSQIENMVT-KGVKVLVIASIDGTTL 73 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-HTCSEEEECCSSGGGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHc-----CCEEEE--eeCCCCHHHHHHHHHHHHH-cCCCEEEEEcCCchhH
Confidence 357899999875 333445566676666664 555544 4577788777788888887 47887764 4444444
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-------cCCeEEEEEEEcCCCCCcc
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-------YNWRRVAAIYEDNVYGGDS 183 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-------~~w~~v~ii~~~~~~g~~~ 183 (550)
......+...++|+|..... .+.. . +....+..+....+..++++|.. .|.++++++..........
T Consensus 74 ~~~~~~~~~~giPvV~~~~~--~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 74 SDVLKQAGEQGIKVIAYDRL--IRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp HHHHHHHHHTTCEEEEESSC--CCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred HHHHHHHHHCCCCEEEECCC--CCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 45556677889999998765 2221 1 12234567888888888888877 6888999997644321113
Q ss_pred hhHHHHHHHHhcC---CCeEEEEEee----cCCCCCCCCChHHHHHHHHHhhc-----CCCeEEEEEcCCHHHHHHHHHH
Q 008863 184 GKLALLAEALQNV---SSSEIQSRLV----LPPISSISDPKEAVRGELKKVQD-----KQSRVFIVLQASLDMTIHLFTE 251 (550)
Q Consensus 184 ~~~~~l~~~l~~~---g~~~v~~~~~----~~~~~~~~~~~~d~~~~l~~i~~-----~~~~~ii~~~~~~~~~~~il~~ 251 (550)
...+.+++.+++. +.+.+..... +.... .....-...++++.+ ..++.|+ +.+...+..++++
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ai~--~~nd~~A~g~~~a 222 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR---WDPATAQARMDNLLSAYYTDAKVDAVL--SPYDGLSIGIISS 222 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG---GCHHHHHHHHHHHHHHHCSSSCCCEEE--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCCC---CCHHHHHHHHHHHHHhcCCCCCeEEEE--ECCCchHHHHHHH
Confidence 4456677777764 2033321100 00000 011223333444433 4566654 5677888899999
Q ss_pred HHHcCCCCC
Q 008863 252 ANRMGLVGK 260 (550)
Q Consensus 252 a~~~g~~~~ 260 (550)
+++.|+..+
T Consensus 223 l~~~g~~vP 231 (330)
T 3uug_A 223 LKGVGYGTK 231 (330)
T ss_dssp HHHTTCSSS
T ss_pred HHHcCCCCC
Confidence 999998654
|
| >4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0038 Score=61.80 Aligned_cols=205 Identities=11% Similarity=0.076 Sum_probs=122.5
Q ss_pred CCCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHH
Q 008863 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (550)
.+++.+||+++|.+.........+++-+.++. |+.+.+...+... . ....++. .++.+||-... .
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~-----g~~~~i~~~~~~~---~---~i~~l~~-~~vDGiIi~~~---~ 86 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQAS-----QSEWDIFIEEDFR---A---RIDKIKD-WLGDGVIADFD---D 86 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH-----TCCEEEEECC-CC---------------CCCSEEEEETT---C
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhc-----CCCeEEEecCCcc---c---hhhhHhc-CCCCEEEEecC---C
Confidence 34678999999866544556667777776665 5556554433221 1 1233443 57777775222 2
Q ss_pred HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCC--cchhHHH
Q 008863 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG--DSGKLAL 188 (550)
Q Consensus 111 ~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~--~~~~~~~ 188 (550)
..+...+...++|+|..... .+.... .+.+-.+..++...+..++++|...|.+++++|........ .....+.
T Consensus 87 ~~~~~~l~~~~iPvV~i~~~--~~~~~~--~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~G 162 (412)
T 4fe7_A 87 KQIEQALADVDVPIVGVGGS--YHLAES--YPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYA 162 (412)
T ss_dssp HHHHHHHTTCCSCEEEEEEC--CSSGGG--SCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHH
T ss_pred hHHHHHHhhCCCCEEEecCC--cccccc--CCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHH
Confidence 23445667789999988765 222111 12234567888888999999999999999999987654210 1556788
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhh-c-CCCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-D-KQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~-~-~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
+.+.+.+.| +........... ..+.......+.++. . ..++.|+. .+...+..+++++++.|+.-+
T Consensus 163 f~~al~~~g-~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~aI~~--~nD~~A~g~~~al~~~G~~vP 230 (412)
T 4fe7_A 163 FRQLVAEEK-YRGVVYQGLETA---PENWQHAQNRLADWLQTLPPQTGIIA--VTDARARHILQVCEHLHIPVP 230 (412)
T ss_dssp HHHHHTTSS-SCCEEECCSCSS---CSSHHHHHHHHHHHHHHSCTTEEEEE--SSHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHcC-CCcccccccccc---ccchhhHHHHHHHHHHhCCCCeEEEE--EecHHHHHHHHHHHHcCCCCC
Confidence 899999988 654321111110 012223334444433 2 25676665 677788899999999998543
|
| >3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0021 Score=59.72 Aligned_cols=194 Identities=14% Similarity=0.087 Sum_probs=125.4
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (550)
++-+||+++|.. ...-.....+++.+.++. |+.+ +.+.++..++..-.+....++. .++.+||-..
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~-~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~------ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE-----GYTA-LISFSTNSDVKKYQNAIINFEN-NNVDGIITSA------ 75 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEE-EEEECSSCCHHHHHHHHHHHHH-TTCSEEEEEC------
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHHC-----CCCE-EEEEeCCCChHHHHHHHHHHHh-CCCCEEEEcc------
Confidence 568999999865 333345556666555553 5551 3346677777666666666665 5887777432
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
.....+...++|+|..... + . .. +.+ .+..+....+...+++|. .|.++++++.............+.+.+
T Consensus 76 ~~~~~~~~~~iPvV~~~~~--~-~-~~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 146 (277)
T 3hs3_A 76 FTIPPNFHLNTPLVMYDSA--N-I-ND---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTA 146 (277)
T ss_dssp CCCCTTCCCSSCEEEESCC--C-C-CS---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCCEEEEccc--c-c-CC---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHH
Confidence 1122356679999987643 1 1 11 224 678888888888999888 999999999876432111456678889
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
.+++.| +.+... ..... . + ...++++.+. .++.|+ +.+...+..+++++++.|+.-+
T Consensus 147 ~l~~~g-~~~~~~-~~~~~-----~-~--~~~~~~~l~~~~~~~ai~--~~~d~~A~g~~~al~~~g~~vP 205 (277)
T 3hs3_A 147 EASKLK-IDYLLE-ETPEN-----N-P--YISAQSALNKSNQFDAII--TVNDLYAAEIIKEAKRRNLKIP 205 (277)
T ss_dssp HHHHTT-CEEEEE-ECCSS-----C-H--HHHHHHHHHTGGGCSEEE--CSSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCC-CCCCCC-CccCC-----c-h--HHHHHHHHcCCCCCCEEE--ECCHHHHHHHHHHHHHcCCCCC
Confidence 999999 877654 33221 1 1 3444444433 566655 5677788899999999998633
|
| >2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.012 Score=55.74 Aligned_cols=207 Identities=15% Similarity=0.146 Sum_probs=113.3
Q ss_pred CcEEEEEEEec---CC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 33 EVTKIGAIVDA---NS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~---~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
++.+||+++|. +. .+......|++.+.++. |+.+.+. ++..+. ...+....+++ .++.+||......
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~-----g~~~~~~--~~~~~~-~~~~~l~~l~~-~~~dgIi~~~~~~ 73 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN-----NAKCKYV--TASTDA-EYVPSLSAFAD-ENMGLVVACGSFL 73 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT-----TCEEEEE--ECCSGG-GHHHHHHHHHH-TTCSEEEEESTTT
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh-----CCeEEEE--eCCCHH-HHHHHHHHHHH-cCCCEEEECChhH
Confidence 45799999972 22 34445556666666554 5665443 332222 23345556665 5788887642221
Q ss_pred HHHHHHHhhcc-CCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHH----HHHHHHcCC-eEEEEEEEcC-CCCC
Q 008863 109 ETAVVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCI----ADLARKYNW-RRVAAIYEDN-VYGG 181 (550)
Q Consensus 109 ~~~~v~~~~~~-~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al----~~~l~~~~w-~~v~ii~~~~-~~g~ 181 (550)
...+..++.. .++|++..... .+. . +.+-.+..+. .++..+ +.++...|. +++++|.... ...
T Consensus 74 -~~~~~~~a~~~p~~p~v~id~~--~~~--~---~~~~~v~~d~-~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~- 143 (318)
T 2fqx_A 74 -VEAVIETSARFPKQKFLVIDAV--VQD--R---DNVVSAVFGQ-NEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMM- 143 (318)
T ss_dssp -HHHHHHHHHHCTTSCEEEESSC--CCS--C---TTEEEEEECH-HHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTT-
T ss_pred -HHHHHHHHHHCCCCEEEEEcCc--cCC--C---CCEEEEEech-HHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHH-
Confidence 1224445544 38999887643 110 1 2232333433 333333 466766776 8999998653 222
Q ss_pred cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 182 ~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
......+.+.+++.+ ..+.....+.... .+...-....+++.+.++++|+. .....+..+++++++.|+.+.+
T Consensus 144 -~~r~~Gf~~~~~~~~-~~~~~~~~~~~~~---~~~~~g~~~a~~ll~~~~daI~~--~~d~~a~Gv~~a~~e~g~~P~d 216 (318)
T 2fqx_A 144 -PLFEAGFEAGVKAVD-PDIQVVVEVANTF---SDPQKGQALAAKLYDSGVNVIFQ--VAGGTGNGVIKEARDRRLNGQD 216 (318)
T ss_dssp -HHHHHHHHHHHHHHC-TTCEEEEEECSCS---SCHHHHHHHHHHHHHTTCCEEEE--ECGGGHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHHHHHC-CCCEEEEEEccCc---cCHHHHHHHHHHHHHCCCcEEEE--CCCCCchHHHHHHHhhhhccCC
Confidence 556778888888776 5433222222110 01123334455555567887765 4455677788999998876333
Q ss_pred EEEEE
Q 008863 262 SVWIV 266 (550)
Q Consensus 262 ~~~i~ 266 (550)
+++.
T Consensus 217 -v~vi 220 (318)
T 2fqx_A 217 -VWVI 220 (318)
T ss_dssp -CEEE
T ss_pred -cEEE
Confidence 4443
|
| >1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0094 Score=57.38 Aligned_cols=200 Identities=12% Similarity=0.043 Sum_probs=115.3
Q ss_pred CcEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCC-HHHHHHHHHHhhhcCCeEEEE--cCCChH
Q 008863 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRD-PFQAATAAQELINKEKVKVIA--GMETWE 108 (550)
Q Consensus 33 ~~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~-~~~a~~~~~~li~~~~v~aii--G~~~s~ 108 (550)
.+.+||+++|.- ...-.....+++.+.++. |+.+.+. +...+ +..-.+....++. .++.+|| ++....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~--~~~~~~~~~~~~~l~~l~~-~~vdGiIi~~~~~~~ 131 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQL-----GASVVVS--MVERSGVEACKTAVHNLLA-QRVSGLIINYPLDDQ 131 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEEE--ECCSSSHHHHHHHHHHHHT-TTCSCEEEESCCCHH
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHc-----CCEEEEE--eCCCCcHHHHHHHHHHHHH-CCCCEEEEecCCCCh
Confidence 567899999854 222234445555555442 6666553 33333 3333444555554 5776655 344332
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
. .+...+...++|+|..... .. ...+ .+..+....+...+++|...|.+++++|.............+.
T Consensus 132 ~--~~~~~~~~~~iPvV~i~~~--~~----~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 132 D--AIAVEAACTNVPALFLDVS--DQ----TPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp H--HHHHHHHTTTSCEEESSSC--TT----SSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred h--HHHHHHhhCCCCEEEEccc--CC----CCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 2 2223344578999987643 11 1223 3556777777888888877899999999865432101445677
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
|.+.+++.| +.+.... .... ...+-...+.++.+. .++.|+. .+...+..+++++++.|+.-+
T Consensus 201 f~~al~~~g-i~~~~~~-~~~~-----~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP 265 (349)
T 1jye_A 201 WHKYLTRNQ-IQPIAER-EGDW-----SAMSGFQQTMQMLNEGIVPTAMLV--ANDQMALGAMRAITESGLRVG 265 (349)
T ss_dssp HHHHHHHTT-CCCSEEE-ECCS-----SHHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCBT
T ss_pred HHHHHHHcC-CCccccc-cCCC-----ChHHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 888898888 7543221 1111 122223344444333 4677665 566778889999999998643
|
| >3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00028 Score=66.64 Aligned_cols=202 Identities=9% Similarity=0.103 Sum_probs=125.1
Q ss_pred CcEEEEEEEecCC-ccch-hHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHH
Q 008863 33 EVTKIGAIVDANS-QMGK-QAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~-~~g~-~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~ 109 (550)
.+-+||+++|... ..-. ....+++.+.++. |+.+.+ .++..++....+....++. .++.+||- +.....
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~~-~~vdGiIi~~~~~~~ 83 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANAN-----GKTILI--ANTGGSSEREVEIWKMFQS-HRIDGVLYVTMYRRI 83 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHHH-TTCSEEEEEEEEEEE
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC-----CCEEEE--EeCCCChHHHHHHHHHHHh-CCCCEEEEecCCccH
Confidence 5678999998752 2333 6778887777764 566654 5566677666666666665 57777663 222222
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHH
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (550)
....+...++|+|..... .+.. ...+ .+..+....+..++++|...|.+++++|.............+.+
T Consensus 84 ---~~~~~~~~~iPvV~~~~~--~~~~--~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (301)
T 3miz_A 84 ---VDPESGDVSIPTVMINCR--PQTR--ELLP---SIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAF 153 (301)
T ss_dssp ---CCCCCTTCCCCEEEEEEE--CSST--TSSC---EEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHH
T ss_pred ---HHHHHHhCCCCEEEECCC--CCCC--CCCC---EEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHH
Confidence 334456679999987754 2211 0223 45678888889999999989999999999765421114566778
Q ss_pred HHHHhcCCCeEEEEEeecCC---CCCCCCChHHH-HHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 190 AEALQNVSSSEIQSRLVLPP---ISSISDPKEAV-RGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~---~~~~~~~~~d~-~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
.+.+++.| +.+.....+.. .. .....+ ...++++.+. .++.|+. .+...+..+++++++.|+.
T Consensus 154 ~~al~~~g-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 154 RRTTSEFG-LTENDLSISLGMDGPV---GAENNYVFAAATEMLKQDDRPTAIMS--GNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp HHHHHHHT-CCGGGEEEEECEESST---TSCEECHHHHHHHHHTSTTCCSEEEE--SSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcC-CCCCcceEEEcCCCCc---CccccHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCC
Confidence 88888887 64322111111 10 011111 1334444333 5677665 5677788999999999985
|
| >2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.051 Score=50.82 Aligned_cols=196 Identities=12% Similarity=0.098 Sum_probs=112.3
Q ss_pred CcEEEEEEEec--CC-ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHH
Q 008863 33 EVTKIGAIVDA--NS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~--~~-~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (550)
++.+||+++|. +. .+......|++.+.++. |+.+. +.++..++....+....+++ .++.+||......
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~l~~l~~-~~vdgIi~~~~~~- 74 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL-----DVDVV--LEEGVNSEQKAHRRIKELVD-GGVNLIFGHGHAF- 74 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS-----CCEEE--EECCCCSHHHHHHHHHHHHH-TTCCEEEECSTHH-
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh-----CCeEE--EEeCCCCHHHHHHHHHHHHH-CCCCEEEEcCHhH-
Confidence 46799999973 22 45556667777766654 55553 44554554444455566665 6899998754332
Q ss_pred HHHHHHhhccC-CccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH-cCCeEEEEEEEcCCCCCcchhHH
Q 008863 110 TAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSGKLA 187 (550)
Q Consensus 110 ~~~v~~~~~~~-~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~-~~w~~v~ii~~~~~~g~~~~~~~ 187 (550)
...+..++..+ ++|++..... .+. +.+-.+..+...-+.....++.+ .+-+++++|..... . . ..+
T Consensus 75 ~~~~~~~~~~~p~~p~v~id~~--~~~------~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~-~--~-r~~ 142 (296)
T 2hqb_A 75 AEYFSTIHNQYPDVHFVSFNGE--VKG------ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPW-Q--P-EVE 142 (296)
T ss_dssp HHHHHTTTTSCTTSEEEEESCC--CCS------SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTT-C--H-HHH
T ss_pred HHHHHHHHHHCCCCEEEEEecC--cCC------CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCc-h--h-hHH
Confidence 23345555544 7888886643 111 22333444444444434433444 35689999986533 2 3 678
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcC
Q 008863 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMG 256 (550)
Q Consensus 188 ~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g 256 (550)
.+.+.+++.| .. .....+.... .+...-....+++.+.++++|+. .....+..+++++++.|
T Consensus 143 Gf~~~~~~~~-~~-~~~~~~~~~~---~~~~~g~~~a~~ll~~~~daI~~--~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 143 GFVDGAKYMN-ES-EAFVRYVGEW---TDADKALELFQELQKEQVDVFYP--AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHHTT-CC-EEEEEECSSS---SCHHHHHHHHHHHHTTTCCEEEC--CCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CC-eEEEEeeccc---cCHHHHHHHHHHHHHCCCcEEEE--CCCCCCHHHHHHHHHcC
Confidence 8889999888 64 3222222110 01123344555665567887664 55566677889999988
|
| >3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.035 Score=52.77 Aligned_cols=213 Identities=10% Similarity=0.094 Sum_probs=129.5
Q ss_pred CcEEEEEEEecCCccchhHHHHHHHHHHHHhcCC--------CCcEEEEEEecCCCCH-----HHHHHHHHHhhhcCCeE
Q 008863 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--------RNHKLSLQIRDHNRDP-----FQAATAAQELINKEKVK 99 (550)
Q Consensus 33 ~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~--------~~~~l~~~~~d~~~~~-----~~a~~~~~~li~~~~v~ 99 (550)
.+.+||++.+.- +.+....++++..+++.|..+ ....+.+++..+-.|+ ..+++...++..+.++.
T Consensus 11 ~~~~igi~t~t~-s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gyk 89 (371)
T 3qi7_A 11 DDFKVAVVTQPL-SENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEVQ 89 (371)
T ss_dssp CCEEEEEEECCT-TTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTEE
T ss_pred CCeEEEEEcCCc-CCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCCe
Confidence 469999998654 345678899999999988742 1123334444333333 34577788888888899
Q ss_pred EEEcCCChHHHHHHHHhhccCCccEEeccCCCC-CCcc-cCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcC
Q 008863 100 VIAGMETWEETAVVAEIASRVQVPILSFAAPAV-TPLS-MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN 177 (550)
Q Consensus 100 aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~-~~~~-~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~ 177 (550)
+|+..............+.+.+++.|-...... ++.. ... ..+ .+..++..-+...+++|...|.+++++|....
T Consensus 90 ~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~--~di-~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~ 166 (371)
T 3qi7_A 90 AIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQF--VDV-NLGVSAEERGKVLAERSKEMGAKAFIHYASTD 166 (371)
T ss_dssp EEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHH--SSE-EEECCHHHHHHHHHHHHHHTTCSCEEEEEETT
T ss_pred EEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhccc--Cce-EEEeChHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 888754332223334455655666544333200 1111 111 112 56777777788888999999999999999754
Q ss_pred CCCC--cchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHh---------hc-CCCeEEEEEcCCHHHH
Q 008863 178 VYGG--DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV---------QD-KQSRVFIVLQASLDMT 245 (550)
Q Consensus 178 ~~g~--~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i---------~~-~~~~~ii~~~~~~~~~ 245 (550)
.... .....+.+++++++.| +...... .+... .+..+ ...+++ .+ ...+.|+ +++...+
T Consensus 167 ~~~~~~~~~R~~Gyk~Al~e~G-i~~~~~~-~~d~t----~e~G~-~~a~~lL~~~~~~~~~~~~~~TAIF--atND~mA 237 (371)
T 3qi7_A 167 DLKDVNIAKRLEMIKETCKNIG-LPFVQVN-TPNIN----TEEDK-NKVKQFLNEDIEKQVKKYGKDINVF--GVNEYMD 237 (371)
T ss_dssp GGGSHHHHHHHHHHHHHHHHTT-CCEEEEE-ECCCS----STHHH-HHHHHHHHHHHHHHHHHHCSCCEEE--ESSHHHH
T ss_pred cccchhHHHHHHHHHHHHHHcC-CCceeec-CCCCc----hHHHH-HHHHHHHhccccchhhccCCCcEEE--ECCHHHH
Confidence 3110 0235677999999999 8765543 22111 22222 222221 12 2335555 5888999
Q ss_pred HHHHHHHHHcCCC
Q 008863 246 IHLFTEANRMGLV 258 (550)
Q Consensus 246 ~~il~~a~~~g~~ 258 (550)
..+++++.+.|+.
T Consensus 238 iG~ikal~e~Gi~ 250 (371)
T 3qi7_A 238 EVILTKALELKYI 250 (371)
T ss_dssp HHHHHHHHHHCCB
T ss_pred HHHHHHHHHcCCc
Confidence 9999999999974
|
| >3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0063 Score=59.05 Aligned_cols=204 Identities=9% Similarity=0.067 Sum_probs=114.4
Q ss_pred CcEEEEEEEecCCc--cchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHH
Q 008863 33 EVTKIGAIVDANSQ--MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEE 109 (550)
Q Consensus 33 ~~i~IG~i~~~~~~--~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~ 109 (550)
.+-+||+++|.... ........+..++++.=. |+.+.+...+...+. .-.+....++ ..++.+||- +... .
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~---g~~~~~~~~~~~~~~-~~~~~~~~l~-~~~vdGiIi~~~~~-~ 140 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG---DTQLTLIPASPASSV-DHVSAQQLVN-NAAVDGVVIYSVAK-G 140 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS---SCEEEEEECCCCTTC-CHHHHHHHHH-TCCCSCEEEESCCT-T
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh---hCCEEEEEcCCCccH-HHHHHHHHHH-hCCCCEEEEecCCC-C
Confidence 56789999987421 112333333333433221 667776655433221 1222333344 356666553 2211 1
Q ss_pred HHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEc-------------
Q 008863 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED------------- 176 (550)
Q Consensus 110 ~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~------------- 176 (550)
. .....+...++|+|..... .+ ....+ .+..+....+...+++|...|.+++++|...
T Consensus 141 ~-~~~~~l~~~~iPvV~i~~~--~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 141 D-PHIDAIRARGLPAVIADQP--AR---EEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp C-HHHHHHHHHTCCEEEESSC--CS---CTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred h-HHHHHHHHCCCCEEEECCc--cC---CCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 1 2233445669999987654 21 12223 3567888888899999999999999999832
Q ss_pred ------CCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhc--CCCeEEEEEcCCHHHHHHH
Q 008863 177 ------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHL 248 (550)
Q Consensus 177 ------~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~~ii~~~~~~~~~~~i 248 (550)
.... ....+.+.+.+++.| +.+.....+.... ....+-...++++.+ ..++.|+. .+...+..+
T Consensus 212 ~~~~~~~~~~--~~R~~Gf~~al~~~g-~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~ 283 (366)
T 3h5t_A 212 RLENAQYQVQ--RDRVRGAMEVFIEAG-IDPGTVPIMECWI---NNRQHNFEVAKELLETHPDLTAVLC--TVDALAFGV 283 (366)
T ss_dssp HHHTCCCTTH--HHHHHHHHHHHHHHT-CCGGGSCEEEESS---CCHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHH
T ss_pred cccccccchH--HHHHHHHHHHHHHCC-CCCCcceEEEcCC---CCHHHHHHHHHHHHcCCCCCcEEEE--CCcHHHHHH
Confidence 1222 456678888898888 6532111111000 022333344444433 25677665 667788889
Q ss_pred HHHHHHcCCCC
Q 008863 249 FTEANRMGLVG 259 (550)
Q Consensus 249 l~~a~~~g~~~ 259 (550)
++++++.|+.-
T Consensus 284 ~~al~~~G~~v 294 (366)
T 3h5t_A 284 LEYLKSVGKSA 294 (366)
T ss_dssp HHHHHHTTCCT
T ss_pred HHHHHHcCCCC
Confidence 99999999864
|
| >2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0033 Score=55.70 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=48.1
Q ss_pred ccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeeceeeeee------eeeEEE
Q 008863 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHDKLLFKK------KKRLCL 547 (550)
Q Consensus 486 ~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~~ti~~~------r~~~~~ 547 (550)
+|||+.--|-+.+. |++ +++... ..|++.|.-|.+|++|+||++++.+.| |++++.
T Consensus 29 ~yeGlatgl~~~f~---gi~--~~i~~m-rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vd 90 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIP--FYYAHM-RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALE 90 (231)
T ss_dssp HHHHHHHHHHHTTT---TSC--EEEEEC-SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEE
T ss_pred hhhHHHHHHHHHhc---CCc--EEEEEc-cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEE
Confidence 89999988888773 666 556554 259999999999999999999999999 999885
|
| >3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.23 Score=44.54 Aligned_cols=130 Identities=17% Similarity=0.074 Sum_probs=84.4
Q ss_pred HHHhhhcCCeEEEEcCCChHHH--------HHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHH
Q 008863 89 AQELINKEKVKVIAGMETWEET--------AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIAD 160 (550)
Q Consensus 89 ~~~li~~~~v~aiiG~~~s~~~--------~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~ 160 (550)
+.+|. +.++.+|+-+-++... .....+.+..++|+++ ...++++
T Consensus 59 a~~L~-~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~---------------------------~~~A~~~ 110 (240)
T 3ixl_A 59 ARRLQ-KQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTT---------------------------MSTAVLN 110 (240)
T ss_dssp HHHHH-HTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEE---------------------------HHHHHHH
T ss_pred HHHhc-cCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEEC---------------------------HHHHHHH
Confidence 34444 4689888865333332 2334455566788776 3467778
Q ss_pred HHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCC---CCCCChHHHHHHHHH-h-hcCCCeEE
Q 008863 161 LARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS---SISDPKEAVRGELKK-V-QDKQSRVF 235 (550)
Q Consensus 161 ~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~---~~~~~~~d~~~~l~~-i-~~~~~~~i 235 (550)
.++..|-++|+++.. |. ....+.+++.+.+.| +++.......... ....+...+.+.+++ + ...+++.|
T Consensus 111 al~~~g~~rvglltp---y~--~~~~~~~~~~l~~~G-iev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adai 184 (240)
T 3ixl_A 111 GLRALGVRRVALATA---YI--DDVNERLAAFLAEES-LVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGI 184 (240)
T ss_dssp HHHHTTCSEEEEEES---SC--HHHHHHHHHHHHHTT-CEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEE
T ss_pred HHHHhCCCEEEEEeC---Ch--HHHHHHHHHHHHHCC-CEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEE
Confidence 888889999999975 65 666788899999999 9877654332211 001133467777888 7 66799999
Q ss_pred EEEcCCHHHHHHHHHHHH
Q 008863 236 IVLQASLDMTIHLFTEAN 253 (550)
Q Consensus 236 i~~~~~~~~~~~il~~a~ 253 (550)
|+ .|..-....++....
T Consensus 185 vL-~CT~l~~l~~i~~le 201 (240)
T 3ixl_A 185 LL-SSGGLLTLDAIPEVE 201 (240)
T ss_dssp EE-ECTTSCCTTHHHHHH
T ss_pred EE-eCCCCchhhhHHHHH
Confidence 99 776654444444443
|
| >3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=92.16 E-value=2.5 Score=40.21 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=68.2
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
+=+||.+.............||..+++.+| +..++.+.+..+-.|+..+.+.+.+|+. +++.+|+...... .+
T Consensus 149 ~~kIGfVgg~~~p~v~~~~~GF~~G~k~~n---p~i~v~~~~~g~~~d~~kg~~~a~~l~~-~G~DvIf~~~d~~---Gv 221 (356)
T 3s99_A 149 KGIAGYIGSVPVPEVVQGINSFMLGAQSVN---PDFRVKVIWVNSWFDPGKEADAAKALID-QGVDIITQHTDST---AA 221 (356)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHHHTTC---TTCEEEEEECSSSCCHHHHHHHHHHHHH-TTCSEEEESSSSS---HH
T ss_pred CCEEEEECCCccHHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCCChHHHHHHHHHHHh-CCCcEEEECCCch---HH
Confidence 347899887654333456789999999887 5678877776666899999999999997 5999999765543 34
Q ss_pred HHhhccCCccEEeccCC
Q 008863 114 AEIASRVQVPILSFAAP 130 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~ 130 (550)
...+.+.++..|.+...
T Consensus 222 ~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 222 IQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHTTCEEEEEESC
T ss_pred HHHHHHcCCEEEEEcCc
Confidence 55667789988887765
|
| >2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A | Back alignment and structure |
|---|
Probab=91.35 E-value=2.9 Score=38.06 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCC---CCCChHHHHHHHHHhhcCCC
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS---ISDPKEAVRGELKKVQDKQS 232 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~---~~~~~~d~~~~l~~i~~~~~ 232 (550)
.++++.++..+-++|+++. .|. ....+.+.+.+.+.| +++........... -......+.+.++++...++
T Consensus 135 ~A~~~al~~~g~~rvgvlt---p~~--~~~~~~~~~~l~~~G-i~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~ga 208 (273)
T 2xed_A 135 GALVEGLRALDAQRVALVT---PYM--RPLAEKVVAYLEAEG-FTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEV 208 (273)
T ss_dssp HHHHHHHHHTTCCEEEEEE---CSC--HHHHHHHHHHHHHTT-CEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTC
T ss_pred HHHHHHHHHcCCCeEEEEc---CCh--hhhHHHHHHHHHHCC-CEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCC
Confidence 4555566667889999996 344 445568888899899 88765443322100 00123456777788877799
Q ss_pred eEEEEEc-CCHHHHHHHHHHH
Q 008863 233 RVFIVLQ-ASLDMTIHLFTEA 252 (550)
Q Consensus 233 ~~ii~~~-~~~~~~~~il~~a 252 (550)
+.||+ . |..-....+..+.
T Consensus 209 daIvL-g~CT~l~~~~~~~~l 228 (273)
T 2xed_A 209 DALVI-SCAVQMPSLPLVETA 228 (273)
T ss_dssp SEEEE-ESSSSSCCTTHHHHH
T ss_pred CEEEE-cCCCCcchHHhHHHH
Confidence 99999 7 7655443344443
|
| >2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=6.2 Score=36.78 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=80.6
Q ss_pred EEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHH
Q 008863 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (550)
Q Consensus 36 ~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (550)
+||.+..........-..|++.++++.|- ..++.+.+..+-.++..+.+.+.+++. .++.+|+...... +..+..
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~a~~ll~-~~~daI~~~~d~~-a~Gv~~ 205 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP---DIQVVVEVANTFSDPQKGQALAAKLYD-SGVNVIFQVAGGT-GNGVIK 205 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT---TCEEEEEECSCSSCHHHHHHHHHHHHH-TTCCEEEEECGGG-HHHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC---CCEEEEEEccCccCHHHHHHHHHHHHH-CCCcEEEECCCCC-chHHHH
Confidence 78888765433345667999999998863 455555444444577888889999997 5799999754433 333333
Q ss_pred hhcc-----CCccEEeccCCCCCCcccC-C---CCCeEEEEecCcHHhHHHHHHHHHHcCCe
Q 008863 116 IASR-----VQVPILSFAAPAVTPLSMS-R---RWPYLIRMASNDSEQMKCIADLARKYNWR 168 (550)
Q Consensus 116 ~~~~-----~~iP~is~~~~~~~~~~~~-~---~~~~~~~~~p~~~~~~~al~~~l~~~~w~ 168 (550)
.+.+ .++.+|.+... +.... - ..|.+-.+..+....+...++.+..-.|+
T Consensus 206 a~~e~g~~P~dv~viG~D~~---~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 206 EARDRRLNGQDVWVIGVDRD---QYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHTTCCCEEEEEESC---CGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHhhhhccCCcEEEEEecc---hhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 3444 67888887765 22111 0 34667777777777777777777665554
|
| >2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene} | Back alignment and structure |
|---|
Probab=89.47 E-value=5 Score=29.58 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=66.8
Q ss_pred EEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHH
Q 008863 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGE 223 (550)
Q Consensus 144 ~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~ 223 (550)
+|-+..++.....-++.-+++.| -++.++|++.+ ......-.+.+++.| +.+...+ +..||+..
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqd----ekrrrerleefekqg-vdvrtve----------dkedfren 67 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQD----EKRRRERLEEFEKQG-VDVRTVE----------DKEDFREN 67 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSC----HHHHHHHHHHHHTTT-CEEEECC----------SHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCch----HHHHHHHHHHHHHcC-Cceeeec----------cHHHHHHH
Confidence 44555667777777888888877 56788888766 333444455678888 7664322 55788888
Q ss_pred HHHhhcC--CCeEEEEE-cCCHHHHHHHHHHHHHcCCC
Q 008863 224 LKKVQDK--QSRVFIVL-QASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 224 l~~i~~~--~~~~ii~~-~~~~~~~~~il~~a~~~g~~ 258 (550)
+++|-.. .-+++++. ..+.+-...|+..|++.|.-
T Consensus 68 ireiwerypqldvvvivttddkewikdfieeakergve 105 (162)
T 2l82_A 68 IREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVE 105 (162)
T ss_dssp HHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcE
Confidence 8877543 44444441 44556778899999999873
|
| >2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=87.52 E-value=9.1 Score=35.18 Aligned_cols=122 Identities=14% Similarity=0.037 Sum_probs=76.9
Q ss_pred EEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHH
Q 008863 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (550)
Q Consensus 35 i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (550)
=+||.+...... . -..|++.++++.| +. ++.+....+..++..+.+.+.+++. .++.+|+..... .+..+.
T Consensus 127 ~~Ig~i~g~~~~--~-r~~Gf~~~~~~~~---~~-~~~~~~~~~~~~~~~g~~~a~~ll~-~~~daI~~~~D~-~a~Gv~ 197 (296)
T 2hqb_A 127 HKVGVIAAFPWQ--P-EVEGFVDGAKYMN---ES-EAFVRYVGEWTDADKALELFQELQK-EQVDVFYPAGDG-YHVPVV 197 (296)
T ss_dssp SEEEEEESCTTC--H-HHHHHHHHHHHTT---CC-EEEEEECSSSSCHHHHHHHHHHHHT-TTCCEEECCCTT-THHHHH
T ss_pred CeEEEEcCcCch--h-hHHHHHHHHHHhC---CC-eEEEEeeccccCHHHHHHHHHHHHH-CCCcEEEECCCC-CCHHHH
Confidence 378888765422 1 6689999998876 34 5544443344577788888999997 589999976544 333444
Q ss_pred HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeE
Q 008863 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRR 169 (550)
Q Consensus 115 ~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~ 169 (550)
..+.+.++.+|.+... .. .....|.+-.+..+....+...++.+..-.|+.
T Consensus 198 ~a~~e~Gv~viG~D~~---~~-~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 198 EAIKDQGDFAIGYVGD---QA-DLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHTCEEEEEESC---CS-SSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHcCCEEEEEecc---hh-hhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 5566678888887653 11 111235666666666666666666655545653
|
| >3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A | Back alignment and structure |
|---|
Probab=87.44 E-value=0.21 Score=47.09 Aligned_cols=49 Identities=8% Similarity=0.038 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEee-ceeeeeeee
Q 008863 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYH-DKLLFKKKK 543 (550)
Q Consensus 492 iDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~-~~ti~~~r~ 543 (550)
-+|+++|++.+|.+ +++++. ..|++++..|..|++|++++ +.+++..|+
T Consensus 34 ~~l~~~L~k~lG~~--ve~~~~-~~~~~~i~aL~~G~vDia~~~~~~~~~~~~ 83 (321)
T 3p7i_A 34 TPFLQDMEKKLGVK--VNAFFA-PDYAGIIQGMRFNKVDIAWYGNLSAMEAVD 83 (321)
T ss_dssp HHHHHHHHHHHTSC--EEEECC-SSHHHHHHHHHTTSCSEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC--EEEEec-CCHHHHHHHHHcCCCcEEEEChHHHHHHHH
Confidence 48999999999988 777653 47999999999999999975 567666543
|
| >2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=87.28 E-value=13 Score=31.73 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=101.4
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
..+|.++.|.. ....-++-...+.+ ..+.+ ++ .+-.+++..+.++ . +++.+||.- ..++..+
T Consensus 4 ~~~I~~iapy~-----~l~~~~~~i~~e~~-----~~i~i--~~--~~l~~~v~~a~~~-~-~~~dVIISR--Ggta~~l 65 (196)
T 2q5c_A 4 SLKIALISQNE-----NLLNLFPKLALEKN-----FIPIT--KT--ASLTRASKIAFGL-Q-DEVDAIISR--GATSDYI 65 (196)
T ss_dssp CCEEEEEESCH-----HHHHHHHHHHHHHT-----CEEEE--EE--CCHHHHHHHHHHH-T-TTCSEEEEE--HHHHHHH
T ss_pred CCcEEEEEccH-----HHHHHHHHHHhhhC-----CceEE--EE--CCHHHHHHHHHHh-c-CCCeEEEEC--ChHHHHH
Confidence 36899999875 33344444444443 24443 33 2356788888888 5 799999953 2233333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
. +..++|+|....+ ..+..+++...-++ + ++++++...+.. ...+.+.+.+
T Consensus 66 r---~~~~iPVV~I~~s--------------------~~Dil~al~~a~~~-~-~kIavvg~~~~~----~~~~~~~~ll 116 (196)
T 2q5c_A 66 K---KSVSIPSISIKVT--------------------RFDTMRAVYNAKRF-G-NELALIAYKHSI----VDKHEIEAML 116 (196)
T ss_dssp H---TTCSSCEEEECCC--------------------HHHHHHHHHHHGGG-C-SEEEEEEESSCS----SCHHHHHHHH
T ss_pred H---HhCCCCEEEEcCC--------------------HhHHHHHHHHHHhh-C-CcEEEEeCcchh----hHHHHHHHHh
Confidence 3 4568999886544 33455666655443 3 489998887652 2356677766
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
. ..+.... +. +.++....++++++.+.++|+- +. ...+.|++.|+.+
T Consensus 117 ~----~~i~~~~-~~-------~~~e~~~~i~~l~~~G~~vvVG-~~------~~~~~A~~~Gl~~ 163 (196)
T 2q5c_A 117 G----VKIKEFL-FS-------SEDEITTLISKVKTENIKIVVS-GK------TVTDEAIKQGLYG 163 (196)
T ss_dssp T----CEEEEEE-EC-------SGGGHHHHHHHHHHTTCCEEEE-CH------HHHHHHHHTTCEE
T ss_pred C----CceEEEE-eC-------CHHHHHHHHHHHHHCCCeEEEC-CH------HHHHHHHHcCCcE
Confidence 5 4554433 22 3468889999999999999887 43 2366788999864
|
| >2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=86.63 E-value=6.1 Score=34.74 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=86.9
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCC----CHH-------HHHHHHHHhhhcCCeEEEE
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR----DPF-------QAATAAQELINKEKVKVIA 102 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~----~~~-------~a~~~~~~li~~~~v~aii 102 (550)
..+||+|.|.++.. ..+ .++...++....|+..+.+.-..... +.. ...+.+..+ .+.++.+|+
T Consensus 6 ~~~ig~i~p~~~~~--~~e--~~~~~~~~~~~~p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l-~~~g~d~iv 80 (228)
T 2eq5_A 6 KYTIGLIRVITLED--KEI--LNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEF-EREGVDAII 80 (228)
T ss_dssp CEEEEEEESSCCCC--HHH--HTHHHHHHHHHCTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHH-HHTTCSEEE
T ss_pred ceEEEEEeccCccC--HHH--HHHHHHHHHhhCCCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHH-HHCCCCEEE
Confidence 57899999987211 111 11222223222356666664332211 111 111223334 346787777
Q ss_pred cCCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCc
Q 008863 103 GMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (550)
Q Consensus 103 G~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~ 182 (550)
-+-++. ..+..+.+..++|++.... +.++.+...+ ++|+++......
T Consensus 81 iaCnta--~~~~~l~~~~~iPvi~i~~---------------------------~~~~~a~~~~-~rigVlat~~t~--- 127 (228)
T 2eq5_A 81 ISCAAD--PAVEKVRKLLSIPVIGAGS---------------------------SVSALALAYG-RRVGVLNLTEET--- 127 (228)
T ss_dssp ECSTTC--TTHHHHHHHCSSCEEEHHH---------------------------HHHHHHHTTC-SSEEEECSSSCC---
T ss_pred EeCCch--HHHHHHHHhCCCCEeCccH---------------------------HHHHHHHHhC-CeEEEEecCccc---
Confidence 543333 3344444566888776321 1111122345 789988875432
Q ss_pred chhHHHHHHHH-hcCCCeEEEEEeecCCC-CCCC-CChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHH
Q 008863 183 SGKLALLAEAL-QNVSSSEIQSRLVLPPI-SSIS-DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253 (550)
Q Consensus 183 ~~~~~~l~~~l-~~~g~~~v~~~~~~~~~-~~~~-~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~ 253 (550)
. ..+++.+ .+.| ..+.... +... .... .....+...++++.+.++|.||+ .|..-....+....+
T Consensus 128 ~---~~~~~~~~~~~g-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvL-gCT~~~t~~~~~~i~ 195 (228)
T 2eq5_A 128 P---KVIRSILGNNLI-AEDHPSG-VSNTLDLLTDWGRREVINAAKRLKEKGVEVIAL-GCTGMSTIGIAPVLE 195 (228)
T ss_dssp C---HHHHHHHGGGEE-EEECCTT-CCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEE-CCTHHHHHTCHHHHH
T ss_pred H---HHHHHHHHHHhC-ccccCCc-eeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEE-CCCCcchHHHHHHHH
Confidence 1 3567777 7777 6532111 1000 0000 01133556677777679999999 887765334444443
|
| >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 | Back alignment and structure |
|---|
Probab=83.32 E-value=23 Score=30.99 Aligned_cols=164 Identities=13% Similarity=0.208 Sum_probs=99.6
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
-.+|.+++|.+ ....-++-.+.+.+ ....+.+.+. +-.+++..+.+++..+++.+||.- ..++..+
T Consensus 12 m~~ii~i~~~~-----~L~~~~~~i~~e~~-----~~~~I~vi~~--~le~av~~a~~~~~~~~~dVIISR--Ggta~~L 77 (225)
T 2pju_A 12 DKPVIWTVSVT-----RLFELFRDISLEFD-----HLANITPIQL--GFEKAVTYIRKKLANERCDAIIAA--GSNGAYL 77 (225)
T ss_dssp -CCEEEEECCH-----HHHHHHHHHHTTTT-----TTCEEEEECC--CHHHHHHHHHHHTTTSCCSEEEEE--HHHHHHH
T ss_pred CCCEEEEEchH-----HHHHHHHHHHHhhC-----CCceEEEecC--cHHHHHHHHHHHHhcCCCeEEEeC--ChHHHHH
Confidence 34788888764 33333333333332 2244445443 345788888887765568899853 2233333
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
. +..++|+|....+ ..+..+++...-+ ++ ++++++...+. ....+.+.+.+
T Consensus 78 r---~~~~iPVV~I~vs--------------------~~Dil~aL~~a~~-~~-~kIavVg~~~~----~~~~~~i~~ll 128 (225)
T 2pju_A 78 K---SRLSVPVILIKPS--------------------GYDVLQFLAKAGK-LT-SSIGVVTYQET----IPALVAFQKTF 128 (225)
T ss_dssp H---TTCSSCEEEECCC--------------------HHHHHHHHHHTTC-TT-SCEEEEEESSC----CHHHHHHHHHH
T ss_pred H---hhCCCCEEEecCC--------------------HHHHHHHHHHHHh-hC-CcEEEEeCchh----hhHHHHHHHHh
Confidence 3 4568999886554 2334555554433 33 58999887665 22456677766
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
. +.+.... +. +.++....++++++.+.++||- +. ...+.|++.|+.+
T Consensus 129 ~----~~i~~~~-~~-------~~ee~~~~i~~l~~~G~~vVVG-~~------~~~~~A~~~Gl~~ 175 (225)
T 2pju_A 129 N----LRLDQRS-YI-------TEEDARGQINELKANGTEAVVG-AG------LITDLAEEAGMTG 175 (225)
T ss_dssp T----CCEEEEE-ES-------SHHHHHHHHHHHHHTTCCEEEE-SH------HHHHHHHHTTSEE
T ss_pred C----CceEEEE-eC-------CHHHHHHHHHHHHHCCCCEEEC-CH------HHHHHHHHcCCcE
Confidence 5 4444332 22 4478899999999999999887 43 2366788999864
|
| >3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.30 E-value=0.41 Score=44.88 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEeec-eeeeee
Q 008863 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYHD-KLLFKK 541 (550)
Q Consensus 492 iDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~~-~ti~~~ 541 (550)
.+|+++|++.+|.+ +++++. ..|++++..|..|++|+++.+ .+.+..
T Consensus 24 ~~l~~~l~k~lG~~--ve~~~~-~~~~~~i~al~~G~vDi~~~~~~~~~~~ 71 (310)
T 3n5l_A 24 EPFLKDMSQQTGYQ--VKAFFA-PDYAGIIQGMRFDKVDIAWYGNKAAMEA 71 (310)
T ss_dssp HHHHHHHHHHHSSE--EEEECC-SSHHHHHHHHHTTSCSEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCC--EEEEeC-CCHHHHHHHHHcCCCCEEEECcHHHHHH
Confidence 58999999999988 777653 479999999999999999754 554433
|
| >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=82.78 E-value=5.7 Score=38.30 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCcc--hhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 156 KCIADLARKYNWRRVAAIYEDNVYGGDS--GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 156 ~al~~~l~~~~w~~v~ii~~~~~~g~~~--~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
..+.++++.++.+++.+|++..... . ...+.+.+.+++.| +++.....+.+.. ..+...+.++.+++.++|
T Consensus 22 ~~l~~~l~~~g~~~~livtd~~~~~--~~~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d 94 (387)
T 3bfj_A 22 SVVGERCQLLGGKKALLVTDKGLRA--IKDGAVDKTLHYLREAG-IEVAIFDGVEPNP----KDTNVRDGLAVFRREQCD 94 (387)
T ss_dssp GGHHHHHHHTTCSEEEEECCTTTC----CCSSHHHHHHHHHHTT-CEEEEECCCCSSC----BHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCEEEEEECcchhh--ccchHHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCCC
Confidence 3466778888889999999876543 3 37899999999988 8764332233332 456788888889989999
Q ss_pred EEEEEc-CCHHHHHHHHHHH
Q 008863 234 VFIVLQ-ASLDMTIHLFTEA 252 (550)
Q Consensus 234 ~ii~~~-~~~~~~~~il~~a 252 (550)
.||-+. ++.-++..++...
T Consensus 95 ~IIavGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 95 IIVTVGGGSPHDCGKGIGIA 114 (387)
T ss_dssp EEEEEESHHHHHHHHHHHHH
T ss_pred EEEEeCCcchhhHHHHHHHH
Confidence 998622 2344556665554
|
| >3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* | Back alignment and structure |
|---|
Probab=82.50 E-value=3.3 Score=39.94 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
....+.++++.++.+++.+|++..-.. ....+.+.+.+++.| +.+.....+.+.. ..+...+.++.+++.++|
T Consensus 18 ~~~~l~~~~~~~g~~~~liVtd~~~~~--~g~~~~v~~~L~~~g-i~~~~~~~v~~~p----~~~~v~~~~~~~~~~~~D 90 (383)
T 3ox4_A 18 SLEKAIKDLNGSGFKNALIVSDAFMNK--SGVVKQVADLLKAQG-INSAVYDGVMPNP----TVTAVLEGLKILKDNNSD 90 (383)
T ss_dssp HHHHHHHTTTTSCCCEEEEEEEHHHHH--TTHHHHHHHHHHTTT-CEEEEEEEECSSC----BHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHcCCCEEEEEECCchhh--CchHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCcC
Confidence 345567778888999999999875322 236788999999999 8765443344433 556788888888888999
Q ss_pred EEEEEcCCH--HHHHHHHHHHH
Q 008863 234 VFIVLQASL--DMTIHLFTEAN 253 (550)
Q Consensus 234 ~ii~~~~~~--~~~~~il~~a~ 253 (550)
.||- .+.+ -++..++....
T Consensus 91 ~IIa-vGGGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 91 FVIS-LGGGSPHDCAKAIALVA 111 (383)
T ss_dssp EEEE-EESHHHHHHHHHHHHHH
T ss_pred EEEE-eCCcHHHHHHHHHHHHH
Confidence 8887 4443 34555555544
|
| >4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=81.15 E-value=1.8 Score=39.70 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=26.9
Q ss_pred CCCcEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHH
Q 008863 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQE 91 (550)
Q Consensus 31 ~~~~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~ 91 (550)
..++|+|.+-. .....++...++..+..|+.+|++... .+..+++.+++
T Consensus 35 ~~~~i~i~GSs--------s~~p~~~~~a~~f~~~~p~v~v~~~~~----GSg~g~~~~~~ 83 (279)
T 4gd5_A 35 STNSVSISGST--------SVGPVMEAEAEAFKTKKPDVSIEINQI----GSSAGIKNAME 83 (279)
T ss_dssp --CEEEEEECT--------TTHHHHHHHHHHHHHHSTTCEEEEEEC----CHHHHHHHHHH
T ss_pred CCCeEEEEEeC--------cHHHHHHHHHHHHHHHCCCceEEEeeC----CcHHHHHHHHc
Confidence 34678886532 222445555666666668888887653 33445555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 550 | ||||
| d1jdpa_ | 401 | c.93.1.1 (A:) Hormone binding domain of the atrial | 2e-33 | |
| d1dp4a_ | 425 | c.93.1.1 (A:) Hormone binding domain of the atrial | 2e-32 | |
| d1ewka_ | 477 | c.93.1.1 (A:) Metabotropic glutamate receptor subt | 6e-19 | |
| d1qo0a_ | 373 | c.93.1.1 (A:) Amide receptor/negative regulator of | 3e-17 | |
| d1usga_ | 346 | c.93.1.1 (A:) Leucine-binding protein {Escherichia | 3e-15 | |
| d3ckma1 | 317 | c.93.1.1 (A:257-573) YraM C-terminal domain {Haemo | 3e-12 | |
| d2f34a1 | 246 | c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li | 0.004 |
| >d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 129 bits (324), Expect = 2e-33
Identities = 53/397 (13%), Positives = 134/397 (33%), Gaps = 36/397 (9%)
Query: 36 KIGAIVDANSQM---GKQAITAMKIAVQNFNSDSR-------NHKLSLQIRDHNRDPFQA 85
++ ++ + + A++ A+++ + + + D +
Sbjct: 9 EVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRAL 68
Query: 86 ATAAQELI--NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPY 143
+ + K +I G A VA +AS +P+LS A A + +
Sbjct: 69 FSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSH 128
Query: 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQS 203
L R+A ++ + + L R ++W R A +Y D+ + E + V E
Sbjct: 129 LTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERN---CYFTLEGVHEVFQEEGLH 185
Query: 204 RLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263
+ + E + + S +++ AS D + A+R G+ D
Sbjct: 186 TSIYSFDETKDLDLEDI-----VRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYA 240
Query: 264 WI---------VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFT 314
+ + D + + + + +++FS + +
Sbjct: 241 FFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTV-TLLRTVKPEFEKFSMEVKSSVE 299
Query: 315 SEYPEEDHFHPSIHALRAHDSIKIITEAIGRL---NYNISSPEMLLRQMLSSDFSGLSGK 371
+ + ++ HD+I + A+ + Y+ +++Q + F G++G+
Sbjct: 300 -KQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQ 358
Query: 372 IRF-KDGE-LLNADTLRIVNVVGKKYKELDFWLPNFG 406
+ +G+ + + + +V + + + G
Sbjct: 359 VSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEG 395
|
| >d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 127 bits (318), Expect = 2e-32
Identities = 55/433 (12%), Positives = 130/433 (30%), Gaps = 53/433 (12%)
Query: 36 KIGAIVDANSQM----GKQAITAMKIAVQNFNSDS---RNHKLSLQIRD-----HNRDPF 83
+ ++ + + A+++A+ + + + +
Sbjct: 4 TVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDT 63
Query: 84 QAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPY 143
A AA +L + V G A V + +VP+L+ APA+ + +
Sbjct: 64 AAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGI-GVKDEYAL 122
Query: 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQS 203
R + + + L R+ W A + + G D ++ V +
Sbjct: 123 TTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNIT 182
Query: 204 RLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263
+ D + +++ I + +S D +L A GL G+D V
Sbjct: 183 VNHQEFVEGDPDHYPKLLRAVRRKGR-----VIYICSSPDAFRNLMLLALNAGLTGEDYV 237
Query: 264 WI---------------VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL 308
+ V D + + + + I D+ + L
Sbjct: 238 FFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQL 297
Query: 309 FRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL---NYNISSPEMLLRQMLSSDF 365
+ +I HD + + +A+ ++ E + ++M + F
Sbjct: 298 KLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSF 357
Query: 366 SGLSGKIRF-KDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIA 424
G++G ++ ++G+ +L ++ ++ + + S+H
Sbjct: 358 QGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVSEH---------- 407
Query: 425 AEGFTGPVIWPGN 437
+ WP
Sbjct: 408 ------KLYWPLG 414
|
| >d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Metabotropic glutamate receptor subtype 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 87.3 bits (215), Expect = 6e-19
Identities = 64/433 (14%), Positives = 134/433 (30%), Gaps = 85/433 (19%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELIN------ 94
Q G Q + AM + N+D N L +IRD A + E I
Sbjct: 36 REQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISI 95
Query: 95 ----------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAV 132
K+ + + G + V + +P ++++A +
Sbjct: 96 RDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATS- 154
Query: 133 TPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192
LS + Y +R+ +D+ Q + + D+ ++YNW V+A++ + YG A
Sbjct: 155 IDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAA 214
Query: 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252
+ + + S K + +V L +
Sbjct: 215 QEGLCIAHSDKIYSNAGEKSFDRLLR------KLRERLPKARVVVCFCEGMTVRGLLSAM 268
Query: 253 NRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGT----------------LGIKSYYS 296
R+G+VG+ I ++ A+ + + + + G L ++ +
Sbjct: 269 RRLGVVGEF-SLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTN 327
Query: 297 DDSSPYKEF-SALFRRNFTSEYPE--------------EDHFHPSIHALRAHDSIKIITE 341
+ + EF F+ E E+++ ++I +
Sbjct: 328 TRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAH 387
Query: 342 AIGRL-------------NYNISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRI 387
+ + LL ++ S F G+SG ++ F + I
Sbjct: 388 GLQNMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGR-YDI 446
Query: 388 VNVVGKKYKELDF 400
+N+ + D+
Sbjct: 447 MNLQYTEANRYDY 459
|
| >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Amide receptor/negative regulator of the amidase operon (AmiC) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 81.3 bits (199), Expect = 3e-17
Identities = 46/346 (13%), Positives = 97/346 (28%), Gaps = 34/346 (9%)
Query: 37 IGAIVD---ANSQMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQE 91
IG + + + + +AV+ N + + +D DP + A++
Sbjct: 4 IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAED 63
Query: 92 LINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151
I V+ + G V + R + TP P ++
Sbjct: 64 FIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYP-----TPYEGFEYSPNIVYGGPAP 118
Query: 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS 211
++ +A ++ RV I D +Y +S + + +
Sbjct: 119 NQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNH-----------VMRHLYRQHGGTVLE 167
Query: 212 SISDPKEAVRGELKKVQDKQSR---VFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268
I P +L++ ++ + + T L+ R G+
Sbjct: 168 EIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLT 227
Query: 269 TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIH 328
T + + + G SS S F + +P ++ +
Sbjct: 228 TSEAEVAKME------SDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFP--ENATITAW 279
Query: 329 ALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF 374
A A+ ++ A E + R + D G +R
Sbjct: 280 AEAAYWQTLLLGRAAQAA--GNWRVEDVQRHLYDIDIDAPQGPVRV 323
|
| >d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Leucine-binding protein species: Escherichia coli [TaxId: 562]
Score = 74.8 bits (182), Expect = 3e-15
Identities = 55/358 (15%), Positives = 117/358 (32%), Gaps = 34/358 (9%)
Query: 32 EEVTKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAA 86
+++ K+ + +Q G + A+++ N+ + KL D DP QA
Sbjct: 1 DDI-KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAV 59
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR 146
A +++N + +K + G T ++I + ++S A P R + +++R
Sbjct: 60 AVANKIVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATN--PELTQRGYQHIMR 116
Query: 147 MASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLV 206
A DS Q A + + AI D G E L +++
Sbjct: 117 TAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYG---------EGLARSVQDGLKAANA 167
Query: 207 LPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266
E L K++ F+ + +A +GL K
Sbjct: 168 NVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGL--KTQFMGP 225
Query: 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPS 326
+L ++ M T D P + +
Sbjct: 226 EGVGNASLSNIAGDAAEGMLVT----MPKRYDQDPAN-------QGIVDALKADKKDPSG 274
Query: 327 IHALRAHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF-KDGELLNAD 383
+ + +++ + A+ R + P L++ + ++ + + G + + + G+L D
Sbjct: 275 PYVWITYAAVQSLATALERTGSD--EPLALVKDLKANGANTVIGPLNWDEKGDLKGFD 330
|
| >d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: YraM C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Score = 65.4 bits (158), Expect = 3e-12
Identities = 42/349 (12%), Positives = 102/349 (29%), Gaps = 53/349 (15%)
Query: 35 TKIGAIVD---ANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQE 91
++IG ++ +G + A N + +Q+ D + +
Sbjct: 1 SQIGLLLPLSGDGQILGTTIQSGFNDAKGN-------STIPVQVFDTSMNS---VQDIIA 50
Query: 92 LINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151
+ +K + G + V+ +++Q + SR P L +
Sbjct: 51 QAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN----SRAIPQLCYYGLSP 106
Query: 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS 211
++ + A+ R N G Q ++ ++ R P
Sbjct: 107 EDEAESAANKMWNDGVRNPLVAMPQNDLG--QRVGNAFNVRWQQLAGTDANIRYYNLPAD 164
Query: 212 SISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271
+E + ++ V + + + + + ++ +
Sbjct: 165 VTYFVQEN--------NSNTTALYAVASPTELAEM-----KGYLTNIVPNLAIYASSRAS 211
Query: 272 NALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALR 331
+ + NT I+ M G + D++ ++ EY ++A+
Sbjct: 212 ASATNTNTDFIAQMNGVQFSDIPFFKDTNS--PQYQKLAKSTGGEYQL-----MRLYAM- 263
Query: 332 AHDSIKIITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRF-KDGEL 379
D+ +I + LRQ+ SGL+G + + +
Sbjct: 264 GADAWLLINQF------------NELRQVPGYRLSGLTGILSADTNCNV 300
|
| >d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Glutamate receptor ligand binding core species: Rat (Rattus norvegicus), GluR5 [TaxId: 10116]
Score = 36.7 bits (83), Expect = 0.004
Identities = 9/69 (13%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 468 FVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDK 527
+V+ + ND+ ++G+ ++L + + + L + + VP G ++
Sbjct: 12 YVMYRKSDKPLYGNDR---FEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNG 68
Query: 528 VNYFNYHDK 536
+ +
Sbjct: 69 MVKELIDHR 77
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 550 | |||
| d1ewka_ | 477 | Metabotropic glutamate receptor subtype 1 {Rat (Ra | 100.0 | |
| d1dp4a_ | 425 | Hormone binding domain of the atrial natriuretic p | 100.0 | |
| d1jdpa_ | 401 | Hormone binding domain of the atrial natriuretic p | 100.0 | |
| d1usga_ | 346 | Leucine-binding protein {Escherichia coli [TaxId: | 100.0 | |
| d1qo0a_ | 373 | Amide receptor/negative regulator of the amidase o | 100.0 | |
| d3ckma1 | 317 | YraM C-terminal domain {Haemophilus influenzae [Ta | 99.95 | |
| d2a5sa1 | 277 | N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt | 99.61 | |
| d1mqia_ | 260 | Glutamate receptor ligand binding core {Rat (Rattu | 99.32 | |
| d1pb7a_ | 289 | N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt | 99.28 | |
| d2f34a1 | 246 | Glutamate receptor ligand binding core {Rat (Rattu | 99.27 | |
| d1ii5a_ | 226 | Glutamate receptor ligand binding core {Synechocys | 98.61 | |
| d1wdna_ | 223 | Glutamine-binding protein {Escherichia coli [TaxId | 98.5 | |
| d1lsta_ | 238 | Lysine-,arginine-,ornithine-binding (LAO) protein | 98.44 | |
| d1jyea_ | 271 | Lac-repressor (lacR) core (C-terminal domain) {Esc | 98.14 | |
| d2fvya1 | 305 | Galactose/glucose-binding protein {Escherichia col | 98.13 | |
| d1xt8a1 | 248 | Putative amino-acid transporter CjaA {Campylobacte | 98.12 | |
| d1jx6a_ | 338 | Quorum-sensing signal (autoinducer-2) binding prot | 98.09 | |
| d8abpa_ | 305 | L-arabinose-binding protein {Escherichia coli [Tax | 97.92 | |
| d1dbqa_ | 282 | Purine repressor (PurR), C-terminal domain {Escher | 97.89 | |
| d2nzug1 | 275 | Glucose-resistance amylase regulator CcpA, C-termi | 97.69 | |
| d2dria_ | 271 | D-ribose-binding protein {Escherichia coli, strain | 97.65 | |
| d1byka_ | 255 | Trehalose repressor, C-terminal domain {Escherichi | 97.56 | |
| d1guda_ | 288 | D-allose-binding protein {Escherichia coli [TaxId: | 97.46 | |
| d1tjya_ | 316 | AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370 | 96.31 | |
| d1vlja_ | 398 | NADH-dependent butanol dehydrogenase A (TM0820) {T | 87.42 | |
| d1rrma_ | 385 | Lactaldehyde reductase FucO {Escherichia coli [Tax | 83.44 | |
| d2pjua1 | 186 | Propionate catabolism operon regulatory protein Pr | 83.32 | |
| d1o2da_ | 359 | Alcohol dehydrogenase TM0920 {Thermotoga maritima | 81.25 |
| >d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Metabotropic glutamate receptor subtype 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.3e-46 Score=380.63 Aligned_cols=358 Identities=18% Similarity=0.276 Sum_probs=292.6
Q ss_pred CCcEEEEEEEecCC-----------------ccchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHH
Q 008863 32 EEVTKIGAIVDANS-----------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQE 91 (550)
Q Consensus 32 ~~~i~IG~i~~~~~-----------------~~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~~~~~a~~~~~~ 91 (550)
+++|.||++||.+. ..|.+...|+.+|||+||++. ||++|++.++|+|+++..|++.+.+
T Consensus 7 ~Gd~~iGGlFp~h~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dtc~~~~~a~~~~~~ 86 (477)
T d1ewka_ 7 DGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIE 86 (477)
T ss_dssp CCSEEEEEEECSBCCCCTTTGGGTCCCCBCTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCEEEEEEEECcCcCCCCCCCccccccccccccHHHHHHHHHHHHHHhCCCCcCCCCEEEEEEEEcCCChHHHHHHHHH
Confidence 46899999999841 236677899999999999987 8999999999999999999999999
Q ss_pred hhh----------------------------cCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCC
Q 008863 92 LIN----------------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWP 142 (550)
Q Consensus 92 li~----------------------------~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~ 142 (550)
++. .++|.|||||.+|..+.+++.++..++||+|+++++ ++. .++..||
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~at--s~~lsd~~~yp 164 (477)
T d1ewka_ 87 FIRDSLISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSAT--SIDLSDKTLYK 164 (477)
T ss_dssp HHC-----------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTCT
T ss_pred HHHhhhcccccccccccccccCCccccccccccceEEEECCCcchhHHHHHHHhhhccCceeccccC--CccccccccCC
Confidence 883 246899999999999999999999999999999999 777 5778999
Q ss_pred eEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHH
Q 008863 143 YLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRG 222 (550)
Q Consensus 143 ~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~ 222 (550)
++||+.|++..+++|+++++++|+|++|++|+++++|| ....+.|++.+.+.| +||.....++... ...++..
T Consensus 165 ~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g--~~~~~~l~~~~~~~~-i~v~~~~~i~~~~----~~~~~~~ 237 (477)
T d1ewka_ 165 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYG--ESGMDAFKELAAQEG-LCIAHSDKIYSNA----GEKSFDR 237 (477)
T ss_dssp TEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHHHHHHHHHT-CEEEEEEEECTTC----CHHHHHH
T ss_pred ceEEecccchhhHHHHHHHHHHcCCcEEEEEEecchhH--HHHHHHHHHHHHHcC-cEEEEEeeccCCC----chhhHHH
Confidence 99999999999999999999999999999999999999 999999999999999 9999888887654 5678999
Q ss_pred HHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccchhhcccCChhHHhhcCceEEEEeecCCCCh
Q 008863 223 ELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSS 300 (550)
Q Consensus 223 ~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 300 (550)
.+++++++ .+++||+ ++....+..++++|.++||+++ +.|+.++.|......... ......|.+++....... +
T Consensus 238 ~l~~l~~~~~~~rVIv~-~~~~~~~~~ll~~a~~~g~~g~-~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i-~ 313 (477)
T d1ewka_ 238 LLRKLRERLPKARVVVC-FCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVIEG-YEVEANGGITIKLQSPEV-R 313 (477)
T ss_dssp HHHHHHTTTTTCCEEEE-ECCHHHHHHHHHHHHHHTCCSC-CEEEECTTTTTCHHHHTT-CHHHHTTCEEEEECCCCC-H
T ss_pred HHHHHhhhccCceEEEE-ecCHHHHHHHHHHHHHcCccCC-ceEEEecccccchhhccc-cccccCcceEeeeccccc-h
Confidence 99999876 7899999 9999999999999999999976 568888877643322211 123356677776654443 5
Q ss_pred hHHHHHHH----------HHHHhhccCCCCC-----------------------CCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 301 PYKEFSAL----------FRRNFTSEYPEED-----------------------HFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 301 ~~~~f~~~----------~~~~~~~~~~~~~-----------------------~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
.+.+|... |.+.||+..+.|. ......+++++||||+++|+||+++.
T Consensus 314 ~f~~~~~~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~ 393 (477)
T d1ewka_ 314 SFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMH 393 (477)
T ss_dssp HHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCcccCCCChHHHHHHHHHhCCCcccccccCccccccccchhhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 55555432 1122222211110 11234578889999999999999874
Q ss_pred cC-------------CCCHHHHHHHHHhCcccccce-eEEEeCCCCCCCCceEEEEeeC-----CeeeEEEEEeC
Q 008863 348 YN-------------ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWLP 403 (550)
Q Consensus 348 ~~-------------~~~~~~l~~~l~~~~~~G~tG-~i~f~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~~ 403 (550)
.+ +.+|++|.+.|++++|.|++| +|.||++|++. ..|+|++++. .+|++||.|++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~~-~~y~I~n~q~~~~~~~~~~~VG~w~~ 467 (477)
T d1ewka_ 394 HALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHE 467 (477)
T ss_dssp HHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCC-CCEEEEEEEECSSSCEEEEEEEEEET
T ss_pred HhhCCCCCCcccCCCcCCHHHHHHHHhcCeeECCCCCEEEECCCCCcc-ceEEEEEEEECCCCcEEEEEEEEEeC
Confidence 31 357999999999999999999 69999999995 8899999873 25899999986
|
| >d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=9.2e-44 Score=358.31 Aligned_cols=374 Identities=14% Similarity=0.195 Sum_probs=299.0
Q ss_pred cEEEEEEEecCCc----cchhHHHHHHHHHHHHhcCC---CCcEEEEEEecCCC-----CHHHHHHHHHHhhhcCCeEEE
Q 008863 34 VTKIGAIVDANSQ----MGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNR-----DPFQAATAAQELINKEKVKVI 101 (550)
Q Consensus 34 ~i~IG~i~~~~~~----~g~~~~~a~~~Av~~iN~~~---~~~~l~~~~~d~~~-----~~~~a~~~~~~li~~~~v~ai 101 (550)
+|+||+++|++.. .+.....|+++|+++||+++ +|++|++++.|+++ ++..+...+++++.+++|.+|
T Consensus 2 ~i~vg~~lPltg~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~D~~~~~~~~~~~~~~~~a~~~~~~~~V~ai 81 (425)
T d1dp4a_ 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF 81 (425)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred cEEEEEEECCCCcccccchhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEECCCcccccCHHHHHHHHHHHHhcCCCeEE
Confidence 6999999999842 35677789999999999998 59999999999874 678889999999988899999
Q ss_pred EcCCChHHHHHHHHhhccCCccEEeccCCCCCCc-ccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCC
Q 008863 102 AGMETWEETAVVAEIASRVQVPILSFAAPAVTPL-SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180 (550)
Q Consensus 102 iG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g 180 (550)
|||.+|..+.++++++..++||+|+++++ ++. .++..+|++||+.|++..+..++++++++++|++|++++.+++||
T Consensus 82 iG~~~S~~~~~v~~~~~~~~ip~is~~st--~~~ls~~~~~~~~~r~~p~~~~~~~~~~~~l~~~~~~~vaii~~~d~~g 159 (425)
T d1dp4a_ 82 LGPGCVYSAAPVGRFTAHWRVPLLTAGAP--ALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLG 159 (425)
T ss_dssp ECCCSHHHHHHHHHHHHHHTCCEEESCCC--CGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSS
T ss_pred ECCCChHHhhhhhhhhHhhCCeEEeeecc--cccccccccCCccccccccchHHHHHHHHHHHhccCceEEEEEeccccc
Confidence 99999999999999999999999999998 666 457788999999999999999999999999999999999999987
Q ss_pred Ccchh------HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHH
Q 008863 181 GDSGK------LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANR 254 (550)
Q Consensus 181 ~~~~~------~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~ 254 (550)
... ...++....+.+ +++......+. ..+++...+++++. .+++|++ .+..+.+..+++++++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~------~~~~~~~~~~~~~~-~~~~vi~-~~~~~~~~~~~~~a~~ 228 (425)
T d1dp4a_ 160 --DDRPCFFIVEGLYMRVRERLN-ITVNHQEFVEG------DPDHYPKLLRAVRR-KGRVIYI-CSSPDAFRNLMLLALN 228 (425)
T ss_dssp --SCCHHHHHHHHHHHHHHHHHC-CEEEEEEECTT------CGGGHHHHHHHHHH-HCSEEEE-ESCHHHHHHHHHHHHH
T ss_pred --cchhhHHHHHHHHHHHHHhcc-eEEeeeeecCC------chhHHHHHHHHhhh-cceeEEE-ecchhHHHHHHHHHHH
Confidence 532 233344555566 77776655444 33566666766654 6778888 8899999999999999
Q ss_pred cCCCCCCEEEEEeccchhhccc---------------CChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCC-
Q 008863 255 MGLVGKDSVWIVTNTVANALDS---------------LNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYP- 318 (550)
Q Consensus 255 ~g~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~- 318 (550)
+|+.++.|+|+..+.+...... ..........+.+.+....+ .++.+.+|.+++++.+...+.
T Consensus 229 ~g~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 307 (425)
T d1dp4a_ 229 AGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEP-DNPEYLEFLKQLKLLADKKFNF 307 (425)
T ss_dssp TTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCC-CSHHHHHHHHHHHHHHHHHHCC
T ss_pred hCCCCCceEEEEecccccccccccccccccceeeccchhhHHHHHHhheeeeccCCC-CChHHHHHHHHHHHHhhccCCC
Confidence 9999999999998765432110 11233445667777776544 448899998888776654432
Q ss_pred CCCCCCCCchhhHHhHHHHHHHHHHHhhccC---CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee--CC
Q 008863 319 EEDHFHPSIHALRAHDSIKIITEAIGRLNYN---ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV--GK 393 (550)
Q Consensus 319 ~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~--~~ 393 (550)
......++.+++++|||++++++|++++..+ ..++..+.++|++++|+|++|+|.||++|+|. ..|.|++++ ++
T Consensus 308 ~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~nGdr~-~~y~i~~~~~~~~ 386 (425)
T d1dp4a_ 308 TVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDPETG 386 (425)
T ss_dssp CCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECTTTC
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhCCeEecCCeeEEECCCCCcc-cceEEEEEECCCC
Confidence 1224556788999999999999999988543 45889999999999999999999999999995 889999986 57
Q ss_pred eeeEEEEEeCCCCCccccCCCCcCCcCCCccccCCCCccccCCCC
Q 008863 394 KYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNL 438 (550)
Q Consensus 394 ~~~~vG~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~wp~~~ 438 (550)
.++.||.|++....... ..+++|+|||+.
T Consensus 387 ~~~~vg~~~~~~~~~~~----------------~~~~~i~W~~~~ 415 (425)
T d1dp4a_ 387 AFRVVLNYNGTSQELMA----------------VSEHKLYWPLGY 415 (425)
T ss_dssp CEEEEEEECTTTCCEEE----------------STTCCCCCTTSS
T ss_pred eEEEEEEEECCCCeEEe----------------cCCceeECCCCC
Confidence 89999999975442211 113459999984
|
| >d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-41 Score=338.30 Aligned_cols=360 Identities=13% Similarity=0.145 Sum_probs=284.3
Q ss_pred CCCcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCC-------CCcEEEEEEecCCCCHHHHHHHHHHhhh--cCCe
Q 008863 31 IEEVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS-------RNHKLSLQIRDHNRDPFQAATAAQELIN--KEKV 98 (550)
Q Consensus 31 ~~~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~-------~~~~l~~~~~d~~~~~~~a~~~~~~li~--~~~v 98 (550)
++++|+||+++|++ +..|.....|+++|+++||+++ +|++|++++.|+++++..+...+.++.. .++|
T Consensus 4 ~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~~~v 83 (401)
T d1jdpa_ 4 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKP 83 (401)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTCCC
T ss_pred CCCccEEEEEECCCCchhhhhHHHHHHHHHHHHHHHhcCCccccCCCCcEEEEEEEeCCCCHHHHHHHHHHHHHhccCCc
Confidence 34799999999999 3567888899999999999987 3799999999999999988888887753 4689
Q ss_pred EEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcc-c-CCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEc
Q 008863 99 KVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS-M-SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED 176 (550)
Q Consensus 99 ~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~-~-~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~ 176 (550)
.+||||.+|..+.+++++++++++|+|+++++ ++.. + ...+|++||+.|++..++.++++++++++|++|++||++
T Consensus 84 ~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~--~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~~ 161 (401)
T d1jdpa_ 84 DLILGPVCEYAAAPVARLASHWDLPMLSAGAL--AAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSD 161 (401)
T ss_dssp SEEECCCSHHHHHHHHHHHHHHTCCEEESCCC--SGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred EEEECCCCcchhHHHHHHHHhcCCceeecccc--ccccccccccCCeEEEeccchHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 99999999999999999999999999999988 6663 3 457899999999999999999999999999999999999
Q ss_pred CCCCCcchhHHHHHHHHh---cCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHH
Q 008863 177 NVYGGDSGKLALLAEALQ---NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253 (550)
Q Consensus 177 ~~~g~~~~~~~~l~~~l~---~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~ 253 (550)
++|| +.....++...+ ..+ ..+......+. ...++...++.+ ...++++++ ++.......+++++.
T Consensus 162 d~~g--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~iv~-~~~~~~~~~i~~~~~ 230 (401)
T d1jdpa_ 162 DKLE--RNCYFTLEGVHEVFQEEG-LHTSIYSFDET------KDLDLEDIVRNI-QASERVVIM-CASSDTIRSIMLVAH 230 (401)
T ss_dssp CSSS--CHHHHHHHHHHHHHHHHT-CEEEEEEECTT------SCCCHHHHHHHH-HHHCSEEEE-ESCHHHHHHHHHHHH
T ss_pred Cccc--chHHHHHHHHHHHhccce-EEEEeeccccC------chhHHHHHHHhh-ccCceeEEE-EechHHHHHHHHHHH
Confidence 9998 876655554444 444 44443332222 223455555544 446778888 899999999999999
Q ss_pred HcCCCCCCEEEEEeccchhhccc---------CChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCC
Q 008863 254 RMGLVGKDSVWIVTNTVANALDS---------LNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFH 324 (550)
Q Consensus 254 ~~g~~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 324 (550)
+.|+.++.|+||.++.+...... ..........+...+..... ..+.+++|.++|++.+..... .....
T Consensus 231 ~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~-~~~~~ 308 (401)
T d1jdpa_ 231 RHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRT-VKPEFEKFSMEVKSSVEKQGL-NMEDY 308 (401)
T ss_dssp HTTCTTTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCC-CCHHHHHHHHHHHHHHHTTTC-CCCSS
T ss_pred HhCCCCCCeEEEeecccccccccCchhhccccchhHHHHHhhheeeccccCC-CChHHHHHHHHHHHHHhhcCC-Ccccc
Confidence 99999999999998765432110 01112334556676665444 448899999999888765432 22345
Q ss_pred CCchhhHHhHHHHHHHHHHHhhccC---CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee---CCeeeEE
Q 008863 325 PSIHALRAHDSIKIITEAIGRLNYN---ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV---GKKYKEL 398 (550)
Q Consensus 325 ~~~~~~~~yDav~~~a~Al~~~~~~---~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~---~~~~~~v 398 (550)
++.+++++|||++++++|++++... +.++..+.++|++++|+|++|+|+||++|+|. ..|.++.++ ++.|+.|
T Consensus 309 ~~~~a~~~yDav~l~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~Gdr~-~~~~~~~~~~~~~g~~~~V 387 (401)
T d1jdpa_ 309 VNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTQEVI 387 (401)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhCCeEEcCceEEEECCCCCcc-CcEEEEEEEECCCCEEEEE
Confidence 6788999999999999999997543 46889999999999999999999999999984 788877664 6889999
Q ss_pred EEEeCCCC
Q 008863 399 DFWLPNFG 406 (550)
Q Consensus 399 G~w~~~~g 406 (550)
|.|+...+
T Consensus 388 g~~~~~~~ 395 (401)
T d1jdpa_ 388 GDYFGKEG 395 (401)
T ss_dssp EEEETTTT
T ss_pred EEEECCCc
Confidence 99998665
|
| >d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Leucine-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-39 Score=315.19 Aligned_cols=337 Identities=15% Similarity=0.192 Sum_probs=290.6
Q ss_pred CcEEEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCCh
Q 008863 33 EVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (550)
Q Consensus 33 ~~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (550)
++|+||+++|++ +..|....+|+++|++++|+.+ .|++|+++++|++++|..+.+++++|++ +++++|+||.++
T Consensus 1 d~I~IG~~~plsG~~a~~G~~~~~g~~lav~~iN~~ggi~G~~i~lv~~D~~~~p~~a~~~~~~li~-~~~~~vig~~~s 79 (346)
T d1usga_ 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVN-DGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCchHHhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEecCCCCHHHHHHHHHHHHh-cCCccccCCccC
Confidence 479999999998 4567889999999999999997 5899999999999999999999999997 688999999999
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHH-HHcCCeEEEEEEEcCCCCCcchhH
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKL 186 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l-~~~~w~~v~ii~~~~~~g~~~~~~ 186 (550)
..+.++++++...++|+++++++ ++......++++|++.|++..+...+.+++ ++++|+++++++++++|| ....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~g--~~~~ 155 (346)
T d1usga_ 80 SSTQPASDIYEDEGILMISPGAT--NPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYG--EGLA 155 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCC--CGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHH--HHHH
T ss_pred ccchhhhhhhhhccccccccccC--ChhhhccCccccccccccchhHHHHHHhhhhhccccceeEEecCchhhh--HHHH
Confidence 99999999999999999999988 677666678999999999999999999986 568899999999999999 9999
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 187 ~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+++.+++.| +++.....++... .|+..++.++++.++++|++ .+.......++++++++|+.. .++.
T Consensus 156 ~~~~~~~~~~g-~~i~~~~~~~~~~------~d~~~~~~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~---~~~~ 224 (346)
T d1usga_ 156 RSVQDGLKAAN-ANVVFFDGITAGE------KDFSALIARLKKENIDFVYY-GGYYPEMGQMLRQARSVGLKT---QFMG 224 (346)
T ss_dssp HHHHHHHHHTT-CCEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCC---EEEE
T ss_pred HHHhhhhhccc-ceEEEEEecCccc------cchhhHHHHhhccCCCEEEE-eccchhhhheeeccccccccc---eEEe
Confidence 99999999999 9999888877643 68899999999999999999 999999999999999999975 4444
Q ss_pred eccchhhcccCChhHHhhcCceEEEEeecCCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhh
Q 008863 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (550)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (550)
...... .. ......+..+|.+...++....++..+.|.+.|++.+ +..++.+++.+||+++++++|++++
T Consensus 225 ~~~~~~-~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~~~~~a~~~Yda~~~la~Al~~a 294 (346)
T d1usga_ 225 PEGVGN-AS-LSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK--------KDPSGPYVWITYAAVQSLATALERT 294 (346)
T ss_dssp CGGGCC-TT-HHHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT--------CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccC-cc-hhhhhhccccceeeecccCCCcCchhhHHHHHHHHHh--------CCCCCchHHHHHHHHHHHHHHHHHH
Confidence 433221 11 1122345677887776655555577888888888766 4567789999999999999999999
Q ss_pred ccCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEee-CCeeeE
Q 008863 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKE 397 (550)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~-~~~~~~ 397 (550)
++. ++..|+++|++++|+|++|+++||++|++....+.|++++ ++++..
T Consensus 295 gs~--d~~~l~~al~~~~~~g~~G~v~fd~~Gd~~~~~~~v~q~~~dG~~~~ 344 (346)
T d1usga_ 295 GSD--EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTK 344 (346)
T ss_dssp CCC--CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEE
T ss_pred CCC--CHHHHHHHHHhCCCccceEEEEECCCcCcCCCCEEEEEEEcCCeEEe
Confidence 887 9999999999999999999999999998877889999997 565543
|
| >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Amide receptor/negative regulator of the amidase operon (AmiC) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.9e-36 Score=298.56 Aligned_cols=340 Identities=13% Similarity=0.155 Sum_probs=283.2
Q ss_pred cEEEEEEEecC---CccchhHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChH
Q 008863 34 VTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (550)
Q Consensus 34 ~i~IG~i~~~~---~~~g~~~~~a~~~Av~~iN~~~--~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (550)
+| ||+++|+| +..|.....|+++|+++||++| .|++|+++.+|+++++..+.+.+.+|+.+++|.+|+|+.+|.
T Consensus 2 pv-IG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S~ 80 (373)
T d1qo0a_ 2 PL-IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSH 80 (373)
T ss_dssp CE-EEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSHH
T ss_pred CE-EEEEcCCcCchhhhhHHHHHHHHHHHHHHHhcCCcCCeEEEEEEEcCCCCHHHHHHHHHHHHhhCCceEEEechhhh
Confidence 56 99999999 4678899999999999999998 689999999999999999999999999889999999999999
Q ss_pred HHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 109 ~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
.+.++++++++.++|++++++. + .....+++||+.|++..+..++++++.+.+|+++++++.|+.|| ....+.
T Consensus 81 ~~~av~~~~~~~~vp~i~~~~~--~---~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g--~~~~~~ 153 (373)
T d1qo0a_ 81 TRKAVMPVVERADALLCYPTPY--E---GFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYP--RESNHV 153 (373)
T ss_dssp HHHHHHHHHHHHTCEEEECSCC--C---CCCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHH--HHHHHH
T ss_pred hhhhhHHHHHHhCCcEEecccc--c---ccccCCceeeeccChHHHHHHHHHHHHhccCceeeeccCCcccc--HHHHhh
Confidence 9999999999999999987655 2 23345899999999999999999999999999999999999999 999999
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEec
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (550)
+++.+++.| ++|+....++... ...|+..++.++++.++++|++ .+...+...+++++.+.+.......+....
T Consensus 154 ~~~~~~~~G-~~vv~~~~~~~~~----~~~d~~~~~~~i~~~~pd~v~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 227 (373)
T d1qo0a_ 154 MRHLYRQHG-GTVLEEIYIPLYP----SDDDLQRAVERIYQARADVVFS-TVVGTGTAELYRAIARRYGDGRRPPIASLT 227 (373)
T ss_dssp HHHHHHTTT-CEEEEEEEECSSC----CHHHHHHHHHHHHHHTCSEEEE-ECCSTTHHHHHHHHHHHHCSSCCCCEEESS
T ss_pred hhhhhhccc-CceeEEEEccCcc----ccchhHHHHHHHHhhCCCceee-ccccchHHHHHHHHHHhcCccccccccccc
Confidence 999999999 9998766554332 5689999999999999999999 888899999999988888766543333333
Q ss_pred cchhhcccCChhHHhhcCceEEEEeecCC-CChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhc
Q 008863 269 TVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (550)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (550)
.......... .....|.+....+... .++..++|.++|++.|.. ...+..++..+||+++++++|+++++
T Consensus 228 ~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~aY~a~~~~a~Ai~~ag 298 (373)
T d1qo0a_ 228 TSEAEVAKME---SDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE------NATITAWAEAAYWQTLLLGRAAQAAG 298 (373)
T ss_dssp CCHHHHTTSC---HHHHTTCEEEESCCTTCCSHHHHHHHHHHHHHSCT------TCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHhhhh---hhhhcCceeecccccccchHHHHHHHHHHHHHcCC------CCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 2222222222 2566777776655432 457888999999988743 12345678889999999999999998
Q ss_pred cCCCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeC-CeeeEE
Q 008863 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG-KKYKEL 398 (550)
Q Consensus 348 ~~~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~-~~~~~v 398 (550)
+. +++.++++|++++|+|.+|+|+|+..++.......|.+++. +.|..|
T Consensus 299 ~~--d~~~i~~aL~~~~~~~~~G~i~f~~~~~~~~~~~~i~q~~~dg~~~vv 348 (373)
T d1qo0a_ 299 NW--RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVR 348 (373)
T ss_dssp SC--CHHHHHHHHSSCCEEETTEEEEECTTTSBEEBCCEEEEECTTSCEEEE
T ss_pred CC--CHHHHHHHHhcCceeCCceeEEEcCCCCcccCceEEEEEccCCcEEEE
Confidence 76 99999999999999999999999976666567778888874 666666
|
| >d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: YraM C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.95 E-value=3.8e-27 Score=226.31 Aligned_cols=310 Identities=13% Similarity=0.097 Sum_probs=229.5
Q ss_pred EEEEEEecCC---ccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 36 KIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 36 ~IG~i~~~~~---~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
|||+++|+|+ ..|...+.|+++|++ +.+|+++++|+++++..+ +.+++.+++|.+|+||.+|..+.+
T Consensus 2 kIG~~lPlSG~~a~~G~~~~~g~~lA~~-------~~~i~l~~~D~~~~~~~a---a~~~l~~~~v~~iiGp~~s~~~~a 71 (317)
T d3ckma1 2 QIGLLLPLSGDGQILGTTIQSGFNDAKG-------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQNLDV 71 (317)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHHT-------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHHHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHhcC-------CCCceEEEEcCCCCHHHH---HHHHHHHcCCeEEEEcccccchHH
Confidence 7999999994 458899999999974 456889999999998654 344555689999999999987776
Q ss_pred HH-HhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 113 VA-EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 113 v~-~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
++ ..++...+|+++.+++ + . ....+++|++.|+...++.++++++...+|++++++++++.|| ....+.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~--~-~--~~~~~~~f~~~~~~~~~~~~la~~~~~~g~k~vail~~~~~~g--~~~~~~~~~ 144 (317)
T d3ckma1 72 ILADPAQIQGMDVLALNAT--P-N--SRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLG--QRVGNAFNV 144 (317)
T ss_dssp HHHCGGGGTTCEEEESCCC--T-T--CCCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHH--HHHHHHHHH
T ss_pred HHHHHHhccCceEEecccc--c-c--cccccceEEeccCCHHHHHHHHhhhhhcccceeEEeccccccc--hhHHHHHHH
Confidence 54 4666667777776554 2 2 2345789999999999999999999999999999999999999 999999999
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEEeccch
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (550)
.+++.| ++|.....++... .+ ......+..+++.+++ ...+..+..+++++...++.. .++....+.
T Consensus 145 ~~~~~G-~~v~~~~~~~~~~------~~--~~~~~~~~~~~d~i~~-~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~ 211 (317)
T d3ckma1 145 RWQQLA-GTDANIRYYNLPA------DV--TYFVQENNSNTTALYA-VASPTELAEMKGYLTNIVPNL---AIYASSRAS 211 (317)
T ss_dssp HHHHHH-SSCCEEEEESSTT------HH--HHHHHHSCTTCCEEEE-CCCHHHHHHHHHHHTTTCTTC---EEEECGGGC
T ss_pred HHHHcC-CEEEEEEeccccc------hh--hhhhhhcccCcceEEE-ecChhHHHHHHHHHHHhcccc---ceeeccccc
Confidence 999999 9998887776532 33 3455667779999999 999999999999999988865 344443332
Q ss_pred hhcccCChhHHhhcCceEEEEeec--CCCChhHHHHHHHHHHHhhccCCCCCCCCCCchhhHHhHHHHHHHHHHHhhccC
Q 008863 272 NALDSLNTTVISSMEGTLGIKSYY--SDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN 349 (550)
Q Consensus 272 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 349 (550)
...............|.+...... ....+....|.+.+...+. ...+++++|||+.+++++...
T Consensus 212 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~a~gyDa~~l~~~~~~~---- 277 (317)
T d3ckma1 212 ASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----------LMRLYAMGADAWLLINQFNEL---- 277 (317)
T ss_dssp CHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHTHHHH----
T ss_pred cCccccchhhhhhhcCcEEecccccCCCCCHHHHHHHHHHHhcCC----------CCchHHHHHHHHHHHHHHHHH----
Confidence 211111223345566766555322 2333555555554443331 233577899999887654322
Q ss_pred CCCHHHHHHHHHhCcccccceeEEEeCCCCCCCCceEEEEeeCCeeeEE
Q 008863 350 ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKEL 398 (550)
Q Consensus 350 ~~~~~~l~~~l~~~~~~G~tG~i~f~~~g~~~~~~~~i~~~~~~~~~~v 398 (550)
+.+....|.|++|+++||++|+. +..+.+.++++|++++|
T Consensus 278 --------~~~~~~~~~G~tG~~~fd~~G~~-~r~~~~~~~~~G~~vp~ 317 (317)
T d3ckma1 278 --------RQVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAIVPV 317 (317)
T ss_dssp --------HHSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEEEEC
T ss_pred --------hccCCCCeecCeEEEEECCCCCE-eecceEEEEECCEEeEC
Confidence 23345679999999999999976 46788999999998874
|
| >d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: N-methyl-D-aspartate receptor subunit 1 species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]
Probab=99.61 E-value=1e-16 Score=149.12 Aligned_cols=92 Identities=14% Similarity=0.278 Sum_probs=70.4
Q ss_pred CeEecccCcccccccEEEecC-CCCCC-C-------------------CCCCcccccchHHHHHHHHHhCCCCCCeEEEe
Q 008863 454 PMRIGVPTRTFFEKFVVIKDD-PLNGN-S-------------------NDKNLRYDGFSIELFRLVVDHLNYDLPYEFVP 512 (550)
Q Consensus 454 ~~~i~~~~~~~~~pfv~~~~~-~~~~~-~-------------------~~~~~~~~GfciDll~~la~~l~f~~~~~~~~ 512 (550)
||||++.++ +||||.++. +.++. . .++++||+||||||+++||+.|||+|+|.+++
T Consensus 2 hl~v~t~~~---~Pfv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~iDl~~~ia~~lg~~~e~~~v~ 78 (277)
T d2a5sa1 2 HLSIVTLEE---APFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVT 78 (277)
T ss_dssp CEEEEECCB---TTTBEEEECCCC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ceEEEEEec---CCeEEEeccCcccCcccCCCcccceecccccCCCCCcccccceeeeHHHHHHHHHHHhCCCEEEEEcc
Confidence 677777655 789997652 21110 0 00246899999999999999999994444444
Q ss_pred c-------CCChHHHHHhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 513 H-------DGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 513 ~-------~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
+ +++|+||+++|.+|++||+++++|||++|++++..
T Consensus 79 ~~~~g~~~~~~w~~~l~~l~~g~~Di~i~~~tit~eR~~~v~F 121 (277)
T d2a5sa1 79 NGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDF 121 (277)
T ss_dssp SSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEE
T ss_pred CCCcCccCCCCHHHHHhhhhcccEEEEEEccEeehhhhhhhcc
Confidence 2 57899999999999999999999999999998753
|
| >d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Glutamate receptor ligand binding core species: Rat (Rattus norvegicus), GluR2 [TaxId: 10116]
Probab=99.32 E-value=3.3e-13 Score=123.89 Aligned_cols=87 Identities=10% Similarity=0.234 Sum_probs=72.4
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec-----------CCChHHHH
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH-----------DGVYDDLI 521 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~-----------~g~w~Gmi 521 (550)
|+++|++- .++||+|.+++.+. .+||+++.||||||+++|++.||++ |++++. ++.|+.++
T Consensus 2 ~t~~v~t~---~~pPf~~~~~~~~~---~~~~~k~~G~~idl~~~ia~~lg~~--~~~~~~~~~~~~~~~~~~~~w~~~~ 73 (260)
T d1mqia_ 2 KTVVVTTI---LESPYVMMKKNHEM---LEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMV 73 (260)
T ss_dssp CCEEEEEC---CBTTTBEECTTGGG---CCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHH
T ss_pred eEEEEEEc---ccCCceEEccCccc---cCCCCCeEEEHHHHHHHHHHHhCCC--eEEEecCCCccceeccccccHHHHH
Confidence 45566643 44899999876532 2368899999999999999999999 777665 26799999
Q ss_pred HhhhcccccEEeeceeeeeeeeeEEE
Q 008863 522 NGVYDKVNYFNYHDKLLFKKKKRLCL 547 (550)
Q Consensus 522 ~el~~~~ad~a~~~~ti~~~r~~~~~ 547 (550)
..|.+|++|++++++|+|+||++.+.
T Consensus 74 ~~l~~G~~D~~~~~~t~T~eR~~~~~ 99 (260)
T d1mqia_ 74 GELVYGKADIAIAPLTITLVREEVID 99 (260)
T ss_dssp HHHHTTSCSEECSSCBCCHHHHTTEE
T ss_pred HhhhcCcHHHHHhhhcCcHHHHhhCc
Confidence 99999999999999999999999765
|
| >d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: N-methyl-D-aspartate receptor subunit 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=4.5e-13 Score=125.02 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=55.9
Q ss_pred CcccccchHHHHHHHHHhCCCCCCeEEEec---------------CCChHHHHHhhhcccccEEeeceeeeeeeeeEEEe
Q 008863 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPH---------------DGVYDDLINGVYDKVNYFNYHDKLLFKKKKRLCLV 548 (550)
Q Consensus 484 ~~~~~GfciDll~~la~~l~f~~~~~~~~~---------------~g~w~Gmi~el~~~~ad~a~~~~ti~~~r~~~~~~ 548 (550)
+.+|+||||||+++||+.|||+ |+++++ +++|+++++.|..|++||+++++++|++|++.+..
T Consensus 57 ~~~~~G~~vDl~~~ia~~lg~~--~e~~~v~~~~~g~~~~~~~~~~~~w~~~~~~l~~g~~Di~~~~~s~t~eR~~~~~F 134 (289)
T d1pb7a_ 57 PQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEF 134 (289)
T ss_dssp EEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECSSCBCCHHHHTTEEE
T ss_pred CCceEEEhHHHHHHHHHHhCCc--EEEEEccccccccccccccccccChhHhhhhhhhhheeEEeeccccCHHHHHhccc
Confidence 4479999999999999999999 666654 34799999999999999999999999999997753
|
| >d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Glutamate receptor ligand binding core species: Rat (Rattus norvegicus), GluR5 [TaxId: 10116]
Probab=99.27 E-value=9e-13 Score=119.71 Aligned_cols=80 Identities=13% Similarity=0.275 Sum_probs=68.8
Q ss_pred cccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEec----------CCChHHHHHhhhcccccEEe
Q 008863 464 FFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH----------DGVYDDLINGVYDKVNYFNY 533 (550)
Q Consensus 464 ~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~----------~g~w~Gmi~el~~~~ad~a~ 533 (550)
.++||+|.+++... .. ||++++||||||++++++.||++ ++++++ .++|++++..|..|++|+++
T Consensus 8 ~~~Py~~~~~~~~~-~~--~n~~~~G~~iDl~~~ia~~lg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~i 82 (246)
T d2f34a1 8 LEEPYVMYRKSDKP-LY--GNDRFEGYCLDLLKELSNILGFL--YDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAV 82 (246)
T ss_dssp CBTTTBEECSCCSC-CC--GGGGEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHHHTTSCSEEC
T ss_pred ccCCCEEEccCCCc-cC--CCCceEEeHHHHHHHHHHHhCCC--eEEEeccccccccccccCchhhhhhhhhhccccEEE
Confidence 35899999887643 23 68999999999999999999999 666553 47899999999999999999
Q ss_pred eceeeeeeeeeEEEe
Q 008863 534 HDKLLFKKKKRLCLV 548 (550)
Q Consensus 534 ~~~ti~~~r~~~~~~ 548 (550)
+++++|.+|++.+..
T Consensus 83 ~~~~~t~~R~~~~~f 97 (246)
T d2f34a1 83 APLTITYVREKVIDF 97 (246)
T ss_dssp SSCBCCHHHHTTEEE
T ss_pred eccccchhhhhcccc
Confidence 999999999987653
|
| >d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Glutamate receptor ligand binding core species: Synechocystis sp., GluR0 [TaxId: 1143]
Probab=98.61 E-value=1.7e-08 Score=89.54 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=63.8
Q ss_pred CCCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 452 ~~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
.+.|||+... ++||.+..... +..++|||+||++++++.+|++ ++++.. ..|+.++..|.+|++|+
T Consensus 3 a~~lrVg~~~---~pP~~~~~~~~--------~g~~~G~~~dl~~~ia~~~g~~--~~~v~~-~~~~~~~~~l~~G~~D~ 68 (226)
T d1ii5a_ 3 AMALKVGVVG---NPPFVFYGEGK--------NAAFTGISLDVWRAVAESQKWN--SEYVRQ-NSISAGITAVAEGELDI 68 (226)
T ss_dssp SCCEEEEECC---CTTTCEEC-------------CEESHHHHHHHHHHHHHTCC--EEEEEC-SCHHHHHHHHHTTSCSE
T ss_pred CCCEEEEEeC---CCCCeEeecCC--------CCcEEEHHHHHHHHHHHHhCCC--eEEEEc-CCHHHHHHHHhcCCccc
Confidence 4678998753 37888764432 2379999999999999999999 777653 37999999999999999
Q ss_pred Eeeceeeeeeeee
Q 008863 532 NYHDKLLFKKKKR 544 (550)
Q Consensus 532 a~~~~ti~~~r~~ 544 (550)
+++.+++|.+|++
T Consensus 69 ~~~~~~~t~~r~~ 81 (226)
T d1ii5a_ 69 LIGPISVTPERAA 81 (226)
T ss_dssp EEEEEECCHHHHT
T ss_pred ccccccchhhhhh
Confidence 9999999999974
|
| >d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Glutamine-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=2.8e-08 Score=87.89 Aligned_cols=76 Identities=20% Similarity=0.353 Sum_probs=63.5
Q ss_pred eEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEEee
Q 008863 455 MRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFNYH 534 (550)
Q Consensus 455 ~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a~~ 534 (550)
|+|.+ ...|+||.+.+ +. .+.||++||++++++.+|++ +++++. .|+.++..|.+|++|++++
T Consensus 2 l~v~~--~~~~pP~~~~~-~g----------~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~l~~g~~D~~~~ 64 (223)
T d1wdna_ 2 LVVAT--DTAFVPFEFKQ-GD----------LYVGFDVDLWAAIAKELKLD--YELKPM--DFSGIIPALQTKNVDLALA 64 (223)
T ss_dssp EEEEE--ESSBTTTBEEE-TT----------EEESHHHHHHHHHHHHHTCC--EEEEEE--CGGGHHHHHHTTSSSEEEE
T ss_pred EEEEe--CCCCCCeEEcc-CC----------eEEEHHHHHHHHHHHHhCCc--EEEEec--CHHHHHhhhhhccceeeec
Confidence 34554 23578998864 32 68899999999999999999 777776 5999999999999999999
Q ss_pred ceeeeeeeeeEEE
Q 008863 535 DKLLFKKKKRLCL 547 (550)
Q Consensus 535 ~~ti~~~r~~~~~ 547 (550)
+++++.+|++.+.
T Consensus 65 ~~~~~~~r~~~~~ 77 (223)
T d1wdna_ 65 GITITDERKKAID 77 (223)
T ss_dssp EEECCHHHHTTSE
T ss_pred ccccchhhhcceE
Confidence 9999999997544
|
| >d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Lysine-,arginine-,ornithine-binding (LAO) protein species: Salmonella typhimurium [TaxId: 90371]
Probab=98.44 E-value=4.6e-08 Score=87.36 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCCCCCCeEEEecCCChHHHHHhhhcccccEE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKVNYFN 532 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~f~~~~~~~~~~g~w~Gmi~el~~~~ad~a 532 (550)
++|||++. ..|+||.+..++. +..|||+||++++++.+|++ +++++. .|..++..|..|++|++
T Consensus 4 ~tl~v~~~--~~~pP~~~~d~~G----------~~~G~~~dl~~~ia~~lg~~--~~~~~~--~~~~~~~~l~~g~~d~~ 67 (238)
T d1lsta_ 4 QTVRIGTD--TTYAPFSSKDAKG----------EFIGFDIDLGNEMCKRMQVK--CTWVAS--DFDALIPSLKAKKIDAI 67 (238)
T ss_dssp SEEEEEEC--SCBTTTBEECTTC----------CEESHHHHHHHHHHHHHTCE--EEEEEC--CGGGHHHHHHTTSCSEE
T ss_pred CEEEEEEC--CCCCCeeEECCCC----------CEEEhHHHHHHHHHHHhCCc--eEEeec--hHHHHHHHHHhccccee
Confidence 45677762 3578999874433 68999999999999999999 777765 49999999999999999
Q ss_pred eeceeeeeeeeeEEE
Q 008863 533 YHDKLLFKKKKRLCL 547 (550)
Q Consensus 533 ~~~~ti~~~r~~~~~ 547 (550)
+++++++.+|++.+.
T Consensus 68 ~~~~~~~~~r~~~~~ 82 (238)
T d1lsta_ 68 ISSLSITDKRQQEIA 82 (238)
T ss_dssp CSSCBCCHHHHHHCE
T ss_pred ecccchhhhhhhhcc
Confidence 999999999987654
|
| >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Lac-repressor (lacR) core (C-terminal domain) species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=6e-05 Score=67.86 Aligned_cols=200 Identities=11% Similarity=0.039 Sum_probs=123.1
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
.||+++|.- .....+...+++.+.++. |+.+.+... ...++..-.+....+++ ++|.+||= +... .....
T Consensus 2 ~igv~~~~l~~~~~~~i~~~i~~~a~~~-----Gy~v~v~~~-~~~~~~~~~~~l~~l~~-~~vdgiIl~~~~~-~~~~~ 73 (271)
T d1jyea_ 2 LIGVATSSLALHAPSQIVAAILSRADQL-----GASVVVSMV-ERSGVEACKTAVHNLLA-QRVSGLIINYPLD-DQDAI 73 (271)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEEEEC-CSSSHHHHHHHHHHHHT-TTCSCEEEESCCC-HHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEEEEEC-CCCCHHHHHHHHHHHHh-cCCCEEEeccccC-chhHH
Confidence 589999854 333345556666666664 777744332 22445455555666776 58887663 3222 23444
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
...+...++|+|..... +. ...++ +..+....+..++++|...|.+++++|..+..........+.+++.+
T Consensus 74 ~~~~~~~~iPvV~~d~~---~~---~~~~~---V~~D~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~~ 144 (271)
T d1jyea_ 74 AVEAACTNVPALFLDVS---DQ---TPINS---IIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYL 144 (271)
T ss_dssp HHHHHTTTSCEEESSSC---TT---SSSCE---EEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeeeeecc---cc---ccCCc---cccchhhccccceeeeeccccccccccccccccchHHhhhHHHHHHh
Confidence 55677889999997653 11 12343 45677788888899998889999999986543211145567788888
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC-CCeEEEEEcCCHHHHHHHHHHHHHcCCCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~~ii~~~~~~~~~~~il~~a~~~g~~~~ 260 (550)
++.+ ............ ....+....+.+.+. .++.|+ +.+...+..+++.+++.|+.-+
T Consensus 145 ~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ai~--~~~~~~a~~~~~~l~~~g~~vp 204 (271)
T d1jyea_ 145 TRNQ-IQPIAEREGDWS-----AMSGFQQTMQMLNEGIVPTAML--VANDQMALGAMRAITESGLRVG 204 (271)
T ss_dssp HHTT-CCCSEEEECCSS-----HHHHHHHHHHHHHTTCCCSEEE--ESSHHHHHHHHHHHHHTTCCBT
T ss_pred hhcc-ccccceeccccc-----cccccchhhhhhhcccccchhh--ccchhhhhHHHHhHHHhhccCC
Confidence 8888 766544433221 222333333344333 355555 4677778889999999998643
|
| >d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Galactose/glucose-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=0.00026 Score=64.60 Aligned_cols=211 Identities=11% Similarity=0.128 Sum_probs=134.4
Q ss_pred cEEEEEEEecCCccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHH
Q 008863 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~ 112 (550)
++|||+++|... ..+..++..++++.-++.+++ ++.+.++..|+..-.+.+.++++ .++.+|+ .|........
T Consensus 1 ~~kIgv~~~~~~---~~f~~~i~~gi~~~a~~~~~~--~l~~~~~~~~~~~q~~~i~~li~-~~vDgiii~~~~~~~~~~ 74 (305)
T d2fvya1 1 DTRIGVTIYKYD---DNFMSVVRKAIEQDAKAAPDV--QLLMNDSQNDQSKQNDQIDVLLA-KGVKALAINLVDPAAAGT 74 (305)
T ss_dssp CEEEEEEESCTT---SHHHHHHHHHHHHHHHTCTTE--EEEEEECTTCHHHHHHHHHHHHH-TTCSEEEECCSSGGGHHH
T ss_pred CcEEEEEeCCCC---CHHHHHHHHHHHHHHHHcCCc--EEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEeecccccccHH
Confidence 489999998753 355566666665544332344 45557888899999999999998 5888755 6777777777
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHc------------CCeEEEEEEEcCCCC
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY------------NWRRVAAIYEDNVYG 180 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~------------~w~~v~ii~~~~~~g 180 (550)
....+...++|++..... .+.......+....+..+....+...++++... +-++++++..+....
T Consensus 75 ~~~~~~~~~ipvv~~~~~--~~~~~~~~~~~~~~V~~dn~~~g~~~~~~l~~~~~~~~~~~~~~~g~~~i~~i~g~~~~~ 152 (305)
T d2fvya1 75 VIEKARGQNVPVVFFNKE--PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 152 (305)
T ss_dssp HHHHHHTTTCCEEEESSC--CCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHhcCCceeeeeec--ccccccccCCCceEEEeCcHHHHHHHHHHHHHHhhhccccccccCCCceEEEEeCCCccc
Confidence 778888999999998765 232222233455567777777777777776432 567888888655421
Q ss_pred CcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhh--cCCCeE-EEEEcCCHHHHHHHHHHHHHcCC
Q 008863 181 GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ--DKQSRV-FIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 181 ~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~--~~~~~~-ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
......+.+.+.+.+.+ .+........... ...........+. ....+. .++ +.+...+..+++++++.|.
T Consensus 153 ~~~~r~~g~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~a~g~~~a~~~~g~ 226 (305)
T d2fvya1 153 DAEARTTYVIKELNDKG-IKTEQLQLDTAMW----DTAQAKDKMDAWLSGPNANKIEVVI-ANNDAMAMGAVEALKAHNK 226 (305)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEEEEEEECTT----CHHHHHHHHHHHHTSTTGGGCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHhhhcC-CcccceeEeeccc----cchhhHHHHHHHHhhccCCCceEEE-ecchHHhHHHHHHHHHhCC
Confidence 11344567888888888 7654443332221 2222222222222 112222 344 6777888889999999986
Q ss_pred C
Q 008863 258 V 258 (550)
Q Consensus 258 ~ 258 (550)
.
T Consensus 227 ~ 227 (305)
T d2fvya1 227 S 227 (305)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Putative amino-acid transporter CjaA species: Campylobacter jejuni [TaxId: 197]
Probab=98.12 E-value=9.3e-07 Score=79.10 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=64.8
Q ss_pred CCeEecccCcccccccEEEecCCCCCCCCCCCcccccchHHHHHHHHHhCC-CCCCeEEEecCCChHHHHHhhhcccccE
Q 008863 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLN-YDLPYEFVPHDGVYDDLINGVYDKVNYF 531 (550)
Q Consensus 453 ~~~~i~~~~~~~~~pfv~~~~~~~~~~~~~~~~~~~GfciDll~~la~~l~-f~~~~~~~~~~g~w~Gmi~el~~~~ad~ 531 (550)
..|||... ..++||.+..++. ...||++||+++|++.|+ ..+++++++. .|..+...|.+|+.|+
T Consensus 11 g~l~v~v~--~~~pP~~~~~~~g----------~~~G~~~Dl~~~ia~~l~~~~~~i~~~~~--~~~~~~~~l~~g~~d~ 76 (248)
T d1xt8a1 11 GVVRIGVF--GDKPPFGYVDEKG----------NNQGYDIALAKRIAKELFGDENKVQFVLV--EAANRVEFLKSNKVDI 76 (248)
T ss_dssp SSEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHHSCTTCEEEEEC--CGGGHHHHHHTTSCSE
T ss_pred CEEEEEEc--CCCCCceEECCCC----------CEeEHHHHHHHHHHHHhcCCCceeeeeee--cccccccccccCcccc
Confidence 45677653 3578998865443 689999999999999883 2344888886 6999999999999999
Q ss_pred EeeceeeeeeeeeEEE
Q 008863 532 NYHDKLLFKKKKRLCL 547 (550)
Q Consensus 532 a~~~~ti~~~r~~~~~ 547 (550)
+.+.+++|.+|++-..
T Consensus 77 ~~~~~~~t~~R~~~~~ 92 (248)
T d1xt8a1 77 ILANFTQTPQRAEQVD 92 (248)
T ss_dssp ECSSCBCCHHHHTTEE
T ss_pred cccccccchhhhccee
Confidence 9999999999987543
|
| >d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Quorum-sensing signal (autoinducer-2) binding protein LuxP species: Vibrio harveyi [TaxId: 669]
Probab=98.09 E-value=0.00013 Score=67.87 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=136.9
Q ss_pred CCCcEEEEEEEecC--CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCCh
Q 008863 31 IEEVTKIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETW 107 (550)
Q Consensus 31 ~~~~i~IG~i~~~~--~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s 107 (550)
..++++||+++|.. +..-.....+++.++++.+. ++.+.....++..|+..-.+...+++. .++.+|| .|..+
T Consensus 37 ~~k~~~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g~---~~~i~~~~~~s~~d~~~q~~~i~~~i~-~~vDgIIi~~~~~ 112 (338)
T d1jx6a_ 37 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNI---NYQLNQVFTRPNADIKQQSLSLMEALK-SKSDYLIFTLDTT 112 (338)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTC---CEEEEEEECCTTCCHHHHHHHHHHHHH-TTCSEEEECCSSS
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHHHcCC---cEEEEEEecCCCCCHHHHHHHHHHHHh-cCCCEEEEecCcc
Confidence 34789999999964 22334556777777777632 355666667888898888888888887 5887665 45556
Q ss_pred HHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC--CeEEEEEEEcCCCCCcchh
Q 008863 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN--WRRVAAIYEDNVYGGDSGK 185 (550)
Q Consensus 108 ~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~--w~~v~ii~~~~~~g~~~~~ 185 (550)
.....+..++...++|++..... .+......++.+..+..+....++.++++|...+ -.+++++.....+. ....
T Consensus 113 ~~~~~i~~~~~~~~ipvv~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~i~~i~~~~~~~-~~~R 189 (338)
T d1jx6a_ 113 RHRKFVEHVLDSTNTKLILQNIT--TPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYI-SDVR 189 (338)
T ss_dssp TTHHHHHHHHHHCSCEEEEETCC--SCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHH-HHHH
T ss_pred cchHHHHHHHHhCCCeEEEEccC--CcccccccCCCceEEecCHHHHHHHHHHHHHHhCCCCeEEEEEecccccc-cHHH
Confidence 66777888999999999987765 3332222233344467888888888999887655 35777776554321 1334
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 186 ~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
.+.+.+.+.+.+.+.+..... ... ....-...++.+... .++.|+. ++...+..+++++++.|...
T Consensus 190 ~~gf~~~l~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~~ 257 (338)
T d1jx6a_ 190 GDTFIHQVNRDNNFELQSAYY-TKA-----TKQSGYDAAKASLAKHPDVDFIYA--CSTDVALGAVDALAELGRED 257 (338)
T ss_dssp HHHHHHHHHHHHCCEEEEEEC-CCS-----SHHHHHHHHHHHHHHCCCCSEEEE--SSHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhhcccccceeec-ccc-----hHHHHHHHHHHHhhhccccccccc--ccchhHhhhhhhhhhhhccc
Confidence 566777776655134433321 111 223334445555433 4565554 66667788889999999743
|
| >d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: L-arabinose-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=0.00035 Score=63.80 Aligned_cols=220 Identities=9% Similarity=0.024 Sum_probs=125.8
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~ 111 (550)
.||||++.+.. ..+-.....+++.+.++. |+++.+ . ...|+.+-.+.+..++. .++.+|| .|.......
T Consensus 1 ~~kIg~v~~~~~~p~~~~~~~g~~~aa~~~-----G~~~i~--~-~~~d~~~q~~~i~~li~-~~vDgiIi~~~~~~~~~ 71 (305)
T d8abpa_ 1 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL-----GFEVIK--I-AVPDGEKTLNAIDSLAA-SGAKGFVICTPDPKLGS 71 (305)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TEEEEE--E-ECCSHHHHHHHHHHHHH-TTCCEEEEECSCGGGHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEEEE--E-cCCCHHHHHHHHHHHHH-cCCCEEEEccccccccH
Confidence 48999999887 333445667777777765 566632 2 33577777888888887 5888766 455566666
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHH----cCC---eEEEEEEEcCCCCCcch
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK----YNW---RRVAAIYEDNVYGGDSG 184 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~----~~w---~~v~ii~~~~~~g~~~~ 184 (550)
.+...+...+||+|..... .+..+....+.+-.+..+....+..+++++.. .++ ....++....+......
T Consensus 72 ~~~~~a~~~giPVV~~d~~--~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 149 (305)
T d8abpa_ 72 AIVAKARGYDMKVIAVDDQ--FVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 149 (305)
T ss_dssp HHHHHHHHTTCEEEEESSC--CBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCc--cccccccccCccceeeehHHHHHHHHHHHHHHHhccccccccceEEEEcCCCCCcHHHH
Confidence 7777888999999998654 22222222222333556666666666665532 222 24445554443210023
Q ss_pred hHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCE
Q 008863 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (550)
Q Consensus 185 ~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~ 262 (550)
..+.+.+.+++.+ ............. ..........+.+... +.+.+++++++...+..+++++++.|+..++.
T Consensus 150 R~~g~~~~l~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~a~g~~~Al~~~G~~~~~i 225 (305)
T d8abpa_ 150 RTTGSMDALKAAG-FPEKQIYQVPTKS---NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 225 (305)
T ss_dssp HHHHHHHHHHHHT-CCGGGEEEEECSS---SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHHhh-ccccccceeccCC---cchhhhHHHHHhhhccCCCcccccccccchHHHHHHHHHHHHhhccCCCc
Confidence 3466777777665 3211111111111 0223334445554443 33444332677777888999999999876554
Q ss_pred EEEEec
Q 008863 263 VWIVTN 268 (550)
Q Consensus 263 ~~i~~~ 268 (550)
.-+..+
T Consensus 226 ~~vg~d 231 (305)
T d8abpa_ 226 IGIGIN 231 (305)
T ss_dssp EEEEES
T ss_pred eEEEec
Confidence 444433
|
| >d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Purine repressor (PurR), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=0.00054 Score=61.57 Aligned_cols=203 Identities=11% Similarity=0.104 Sum_probs=123.1
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~v 113 (550)
+||+++|.. ...-.+...+++-+.++. |+.+ .+.++..|+....+....++. .++.++| .+..... ...
T Consensus 2 tIg~i~~~~~~pf~~~~~~gi~~~~~~~-----gy~~--~~~~~~~d~~~~~~~~~~l~~-~~vdgiIi~~~~~~~-~~~ 72 (282)
T d1dbqa_ 2 SIGLLATSSEAAYFAEIIEAVEKNCFQK-----GYTL--ILGNAWNNLEKQRAYLSMMAQ-KRVDGLLVMCSEYPE-PLL 72 (282)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHH-----TCEE--EEEECTTCHHHHHHHHHHHHH-TTCSEEEEECSCCCH-HHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEE--EEEeCCCCHHHHHHHHHHHHh-cCCCEEeeecccccc-hhh
Confidence 699999876 334445667777666664 5555 456677788776666666765 5777744 3333222 223
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l 193 (550)
.......++|++..... .+.. ..+ ....++....+..+++++...|.++++++...............+....
T Consensus 73 ~~~~~~~~iPvV~~~~~--~~~~---~~~--~~v~~d~~~~~~~~~~~l~~~G~~~i~~i~~~~~~~~~~~~~~~~~~~~ 145 (282)
T d1dbqa_ 73 AMLEEYRHIPMVVMDWG--EAKA---DFT--DAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAM 145 (282)
T ss_dssp HHHHHTTTSCEEEEECS--SCCS---SSC--EEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHH
T ss_pred hhHHhhcCCCceEEEec--cccc---ccc--eEEEecccchhhhhhhhhccccccccccccCCcchhhhhhhhhhHHHHH
Confidence 33444578999998765 2221 112 2356677778888888999999999999987653211145566666777
Q ss_pred hcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCC
Q 008863 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (550)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~ 261 (550)
.+.+ ............ ....+......++... .++.|+ +.+...+..+++.+.++|+.-+.
T Consensus 146 ~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~--~~~d~~a~g~~~~l~~~g~~vp~ 208 (282)
T d1dbqa_ 146 EEAM-IKVPESWIVQGD----FEPESGYRAMQQILSQPHRPTAVF--CGGDIMAMGALCAADEMGLRVPQ 208 (282)
T ss_dssp HHTT-CCCCGGGBCCCC----SSHHHHHHHHHHHHTSSSCCSEEE--ESCHHHHHHHHHHHHHTTCCTTT
T ss_pred hhcC-CCccceEEEecc----cchhhHHHHHHHHHhCCCCCceEE--EecchhhhhHHHHHHhccCCCCc
Confidence 7766 443322222221 1334444556666544 445555 46777888899999999986443
|
| >d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Glucose-resistance amylase regulator CcpA, C-terminal domain species: Bacillus megaterium [TaxId: 1404]
Probab=97.69 E-value=0.00062 Score=60.97 Aligned_cols=209 Identities=10% Similarity=0.108 Sum_probs=125.7
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (550)
+=+||+++|.- ...-.....+++-++++. |+.+ .+.++..++..-.+....++. .++.+++-........
T Consensus 3 t~tIgvvvp~l~~~f~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~e~~~i~~~~~-~~vdgii~~~~~~~~~- 73 (275)
T d2nzug1 3 TTTVGVIIPDISNIFYAELARGIEDIATMY-----KYNI--ILSNSDQNQDKELHLLNNMLG-KQVDGIIFMSGNVTEE- 73 (275)
T ss_dssp CSEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHHT-TCCSEEEECCSCCCHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHc-----CCEE--EEEECCCCHHHHHHHHHHHHh-cCCceeeccccchhhH-
Confidence 45699999842 222234445555555442 5655 456667777766667777776 5777777322222222
Q ss_pred HHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCC-CcchhHHHHHH
Q 008863 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG-GDSGKLALLAE 191 (550)
Q Consensus 113 v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g-~~~~~~~~l~~ 191 (550)
....+...++|++..... .+ ...++ .+.+++...+..+++++...|.++++++..+.... ........+..
T Consensus 74 ~~~~l~~~~~pvv~~~~~--~~---~~~~~---~V~~d~~~~~~~~~~~l~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~ 145 (275)
T d2nzug1 74 HVEELKKSPVPVVLAASI--ES---TNQIP---SVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKR 145 (275)
T ss_dssp HHHHHHHCSSCEEEESCC--CT---TCCSC---EEEECHHHHHHHHHHHHHHTTCSCEEEEESCTTSHHHHTTHHHHHHH
T ss_pred HHHHHhhccccccccccc--cc---ccccc---ccccccccchhHHHHHHHHhcccceEEEecCcccchhhhHHHHHHHH
Confidence 234566789999887654 12 12223 36678888889899999999999999998543211 00334456667
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
...+.| +.+.......... +.......++++... .++.|+ +++...+..++.++.++|+.-+.-+.+.
T Consensus 146 ~~~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ai~--~~~d~~A~g~~~~l~~~g~~ip~di~vi 215 (275)
T d2nzug1 146 ALTESG-LPVRDSYIVEGDY----TYDSGIEAVEKLLEEDEKPTAIF--VGTDEMALGVIHGAQDRGLNVPNDLEII 215 (275)
T ss_dssp HHHHTT-CCCCGGGEEECCS----SHHHHHHHHHHHHTSSSCCSEEE--ESSHHHHHHHHHHHHTTTCCTTTTCEEE
T ss_pred HHHHcC-CCCCcceEEeccC----CHHHHHHHHHHHHhcCCCCeEEE--ecChHHHHHHHHHHhhcCCCCCccceee
Confidence 777777 6553222221111 233444556666544 455555 4677788899999999998643324443
|
| >d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: D-ribose-binding protein species: Escherichia coli, strain k-12 [TaxId: 562]
Probab=97.65 E-value=0.0019 Score=57.42 Aligned_cols=198 Identities=10% Similarity=0.086 Sum_probs=122.9
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEc-CCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (550)
+||++.|.- ..+-.....|++-+.++. |+.+ .+.++..|+..-.+.+.+++. +++.+++- |.........
T Consensus 3 tIgvvvp~~~~~f~~~~~~gi~~~a~~~-----g~~~--~i~~~~~~~~~~~~~i~~~~~-~~~d~ii~~~~~~~~~~~~ 74 (271)
T d2dria_ 3 TIALVVSTLNNPFFVSLKDGAQKEADKL-----GYNL--VVLDSQNNPAKELANVQDLTV-RGTKILLINPTDSDAVGNA 74 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEE--EEEECTTCHHHHHHHHHHHTT-TTEEEEEECCSSTTTTHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEE--EEEeCCCCHHHHHHHHHHHHh-cCCcccccccccccchHHH
Confidence 399999864 333345556666666664 5555 456778899888888889887 68887764 4444444555
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcC--CeEEEEEEEcCCCCCcchhHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN--WRRVAAIYEDNVYGGDSGKLALLAE 191 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~--w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (550)
...+...+||+|..... .+. . +..-.+.+++...+..++++|.+.+ -.+++++...............+++
T Consensus 75 ~~~~~~~~ipvV~~~~~--~~~--~---~~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (271)
T d2dria_ 75 VKMANQANIPVITLDRQ--ATK--G---EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHTTCCEEEESSC--CSS--S---CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHhhcceeEEEeccc--ccc--c---ccceEEeecchhhHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHhHHH
Confidence 66778889999988754 111 1 1233456777778888888886543 3477777755432211334455667
Q ss_pred HHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCC
Q 008863 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (550)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~ 257 (550)
.+...+ ........... ...........+... ..+.|+ +.+...+..+++++++.|.
T Consensus 148 ~l~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ai~--~~~d~~a~g~~~al~~~g~ 206 (271)
T d2dria_ 148 AVAAHK-FNVLASQPADF------DRIKGLNVMQNLLTAHPDVQAVF--AQNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHT-CEEEEEEECTT------CHHHHHHHHHHHHHHCTTCCEEE--ESSHHHHHHHHHHHHHHTC
T ss_pred Hhhccc-ccccceeeecc------hhhhhhhhHHHHHhcccCceEEe--cccHHHHHHHHHHHHHhCC
Confidence 777766 55544333222 223333333333332 455555 4667788889999999884
|
| >d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Trehalose repressor, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=0.0022 Score=56.48 Aligned_cols=193 Identities=11% Similarity=0.045 Sum_probs=125.0
Q ss_pred EEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHH
Q 008863 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (550)
Q Consensus 35 i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (550)
-.||+++|.. .........++..++++. |+.+ .+.++..++..-.+....+.+ .++.+||=.......
T Consensus 3 k~Igvi~p~~~~~~~~~~~~~i~~~~~~~-----Gy~~--~~~~s~~d~~~~~~~i~~l~~-~~vdgiIi~~~~~~~--- 71 (255)
T d1byka_ 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ-----GYDP--IMMESQFSPQLVAEHLGVLKR-RNIDGVVLFGFTGIT--- 71 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH-----TCEE--EEEECTTCHHHHHHHHHHHHT-TTCCEEEEECCTTCC---
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEE--EEEeCCCCHHHHHHHHHHHHh-ccccceeeccccchH---
Confidence 3699999864 333334556666666664 5555 456788888777777666765 577777742222221
Q ss_pred HHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCC-CCCcchhHHHHHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALLAEA 192 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l~~~ 192 (550)
..+....++|++..+.. .+ .+| .+.++....++.++++|...|-++++++..... ........+.+.+.
T Consensus 72 ~~~~~~~~~p~v~i~~~--~~-----~~~---~v~~D~~~~g~~~~~~L~~~g~~~i~~i~~~~~~~~~~~~r~~g~~~~ 141 (255)
T d1byka_ 72 EEMLAHWQSSLVLLARD--AK-----GFA---SVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp TTTSGGGSSSEEEESSC--CS-----SCE---EEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeccC--CC-----CCC---EEEeCcHHHHHHHHHHHHHhccccccccCCCcccccHHHHHhhHHHHH
Confidence 24566778888876644 11 234 367788889999999999999999999975432 11113456788899
Q ss_pred HhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeEEEEEcCCHHHHHHHHHHHHHcCCC
Q 008863 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (550)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ii~~~~~~~~~~~il~~a~~~g~~ 258 (550)
+++.| +..... .... ...+-...++++...+++.|+ +++...+..+++.+++.|+.
T Consensus 142 ~~~~~-i~~~~~--~~~~-----~~~~~~~~~~~~l~~~~~aii--~~~d~~A~g~~~~l~~~g~~ 197 (255)
T d1byka_ 142 CKAHK-LHPVAA--LPGL-----AMKQGYENVAKVITPETTALL--CATDTLALGASKYLQEQRID 197 (255)
T ss_dssp HHHTT-CCCEEE--CCCS-----CHHHHHHHSGGGCCTTCCEEE--ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHcC-CCcccc--cCCC-----CHHHHHHHHHHHhCCccceee--ccchhhHhhHHHHHHHhCcc
Confidence 99888 653322 2211 223334556666666778755 46777778899999999873
|
| >d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: D-allose-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.01 Score=53.01 Aligned_cols=217 Identities=9% Similarity=-0.007 Sum_probs=130.9
Q ss_pred EEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHHHH
Q 008863 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAVV 113 (550)
Q Consensus 36 ~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~v 113 (550)
+.+++.+.- ..+-.....|++-+.++. |+++.+...++..|+..-.+...++++ .++.+|| .|..+......
T Consensus 3 ~~a~i~~~~~npff~~i~~g~~~~a~~~-----g~~~~i~~~~~~~d~~~q~~~i~~~i~-~~~DgIi~~~~~~~~~~~~ 76 (288)
T d1guda_ 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL-----GVSVDIFASPSEGDFQSQLQLFEDLSN-KNYKGIAFAPLSSVNLVMP 76 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCCEEEEECSSTTCHHHHHHHHHHHHT-SSEEEEEECCSSSSTTHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEEEEEecCCCCCHHHHHHHHHHHHh-cCCCEEEEecCCcchhhHH
Confidence 456777654 234445677888777776 678888777888898888888888887 6899886 45555555455
Q ss_pred HHhhccCCccEEeccCCCCCCc--ccCCCCCeEEEEecCcHHhHHHHHHHHHHc---CCeEEEEEEEcCCCCCcchhHHH
Q 008863 114 AEIASRVQVPILSFAAPAVTPL--SMSRRWPYLIRMASNDSEQMKCIADLARKY---NWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 114 ~~~~~~~~iP~is~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~al~~~l~~~---~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
..-+...++|++..... -.. ......+....+..+....+...++++... +-.++.++..+............
T Consensus 77 l~~~~~~gipvv~~d~~--~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~r~~~ 154 (288)
T d1guda_ 77 VARAWKKGIYLVNLDEK--IDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNG 154 (288)
T ss_dssp HHHHHHTTCEEEEESSC--CCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHhCCCeEEEeCCC--CccccccccCCCeeeEEecCHHHHHHHHHHHHHHHhccCCceeeccCCCcccchhhHHHHh
Confidence 56677889999998765 111 111222333346677777777777766432 33467766654432200233445
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC--CCeEEEEEcCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 008863 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (550)
Q Consensus 189 l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~~ii~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (550)
+.+.+...+..++........ +..........+... +.+.|+ +++...+..+++.+++.|+. .+...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~-~di~ivg 225 (288)
T d1guda_ 155 ATEAFKKASQIKLVASQPADW------DRIKALDVATNVLQRNPNIKAIY--CANDTMAMGVAQAVANAGKT-GKVLVVG 225 (288)
T ss_dssp HHHHHHTCTTEEEEEEEECTT------CHHHHHHHHHHHHHHCTTCCEEE--ESSHHHHHHHHHHHHHTTCT-TTSEEEE
T ss_pred hhcccccccccccceeeeccc------hhhHHHHHHHHhhccCcccceee--ccCCHHHHHHHHHHHHcCCC-CCeEEEe
Confidence 566665553145443332222 234444445555443 455444 57788888899999999984 3344444
Q ss_pred ecc
Q 008863 267 TNT 269 (550)
Q Consensus 267 ~~~ 269 (550)
.+.
T Consensus 226 ~D~ 228 (288)
T d1guda_ 226 TDG 228 (288)
T ss_dssp ESC
T ss_pred cCC
Confidence 443
|
| >d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: AI-2 receptor LsrB species: Salmonella typhi [TaxId: 90370]
Probab=96.31 E-value=0.078 Score=47.40 Aligned_cols=204 Identities=10% Similarity=0.035 Sum_probs=111.4
Q ss_pred cEEEEEEEecC-CccchhHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHhhhcCCeEEEE-cCCChHHHH
Q 008863 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETA 111 (550)
Q Consensus 34 ~i~IG~i~~~~-~~~g~~~~~a~~~Av~~iN~~~~~~~l~~~~~d~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~ 111 (550)
.-+||++.+.. ..+-.....+++.+.++. |+++.+. ..+..|+..-.+...+++. +++.+|| .|..+....
T Consensus 3 ~~kI~~i~~~~~npf~~~~~~g~~~~a~~~-----G~~v~~~-~~~~~d~~~q~~~i~~~i~-~~~dgIIi~~~~~~~~~ 75 (316)
T d1tjya_ 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKAL-----GIDVTYD-GPTEPSVSGQVQLVNNFVN-QGYDAIIVSAVSPDGLC 75 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHH-----TCEEEEC-CCSSCCHHHHHHHHHHHHH-TTCSEEEECCSSSSTTH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEEEEE-ECCCCCHHHHHHHHHHHHh-cCCCeeeecccccchhh
Confidence 56899998775 344456678888888776 5665432 2466788888888889987 5787666 466555566
Q ss_pred HHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecCcHHhHHHHHHHHH---HcCCeEEEEEEEcCCCCCcchhHHH
Q 008863 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR---KYNWRRVAAIYEDNVYGGDSGKLAL 188 (550)
Q Consensus 112 ~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~al~~~l~---~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (550)
.....+...++|++..... .+... . ..+. ...........+...+. ..+..++.++...............
T Consensus 76 ~~~~~a~~~gi~vv~~d~~--~~~~~--~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (316)
T d1tjya_ 76 PALKRAMQRGVKILTWDSD--TKPEC--R-SYYI-NQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKE 149 (316)
T ss_dssp HHHHHHHHTTCEEEEESSC--CCGGG--C-SEEE-ESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHH
T ss_pred hhhhhhhcccccceecccc--ccccc--c-cccc-ccchhHHHHHHHHHHHHHhhcccccceeeecccccccchhhhhhH
Confidence 6666778889999998765 23221 1 1222 12223333333333332 2355666666543321100111222
Q ss_pred HHHHHhc--CCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCC--CeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 189 LAEALQN--VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 189 l~~~l~~--~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+...... .+ ..+..... ... ..+.-....+.+.+.. .+.|+ +.+...+.-+++++++.|...
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~~~l~~~p~~~aI~--~~nd~~a~ga~~al~~~g~~~ 215 (316)
T d1tjya_ 150 AKAKISQEHPG-WEIVTTQF-GYN-----DATKSLQTAEGIIKAYPDLDAII--APDANALPAAAQAAENLKRNN 215 (316)
T ss_dssp HHHHHHHHCTT-EEEEEEEE-CTT-----CHHHHHHHHHHHHHHCSSCCEEE--ECSTTHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhhccc-ccchhhcc-chh-----hhHHHHHHHHHHhhcCCCCcEEE--ECCcHHHHHHHHHHHHcCCCC
Confidence 2222332 23 34333322 111 2233344444444443 44454 455667777888888887643
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Probab=87.42 E-value=0.81 Score=42.18 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=64.6
Q ss_pred CeEEEEecCcHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHH
Q 008863 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (550)
Q Consensus 142 ~~~~~~~p~~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~ 221 (550)
|.-+...+. ....+.++++.++.+++.+|+++..+. .....+.+.+.|++.| +.+.....+.+.. ..++..
T Consensus 12 p~~i~~G~g---~~~~l~~~l~~~g~~rvliVt~~~~~~-~~g~~~~l~~~L~~~g-i~~~~f~~v~~~p----t~~~v~ 82 (398)
T d1vlja_ 12 PTKIVFGRG---TIPKIGEEIKNAGIRKVLFLYGGGSIK-KNGVYDQVVDSLKKHG-IEWVEVSGVKPNP----VLSKVH 82 (398)
T ss_dssp CCEEEESTT---CGGGHHHHHHHTTCCEEEEEECSSHHH-HSSHHHHHHHHHHHTT-CEEEEECCCCSSC----BHHHHH
T ss_pred CCeEEEccC---HHHHHHHHHHhcCCCeEEEEECCcHHH-HhhHHHHHHHHHHhcC-CeEEEEcCccCCC----CHHHHH
Confidence 333444444 344588999999999999999876431 1236789999999999 8776543343332 457788
Q ss_pred HHHHHhhcCCCeEEEEEcCCHH
Q 008863 222 GELKKVQDKQSRVFIVLQASLD 243 (550)
Q Consensus 222 ~~l~~i~~~~~~~ii~~~~~~~ 243 (550)
+.++.+++.++|.||- .+.+.
T Consensus 83 ~~~~~~~~~~~D~IIa-vGGGs 103 (398)
T d1vlja_ 83 EAVEVAKKEKVEAVLG-VGGGS 103 (398)
T ss_dssp HHHHHHHHTTCSEEEE-EESHH
T ss_pred HHhhhcccccCceEEe-cCCcc
Confidence 8888999999999987 54443
|
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Probab=83.44 E-value=0.75 Score=42.21 Aligned_cols=90 Identities=10% Similarity=0.116 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCe
Q 008863 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (550)
Q Consensus 154 ~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~ 233 (550)
....+.++++.+|.+++.++++..-.- ....+.+.+.+++.| +.+.....+.+.. ..++..+.++..++.++|
T Consensus 17 ~l~~l~~~l~~~G~k~~Livt~~~~~~--~g~~~~v~~~L~~~g-i~~~vf~~v~~~p----~~~~v~~~~~~~~~~~~D 89 (385)
T d1rrma_ 17 AVGALTDEVKRRGYQKALIVTDKTLVQ--CGVVAKVTDKMDAAG-LAWAIYDGVVPNP----TITVVKEGLGVFQNSGAD 89 (385)
T ss_dssp GGGGHHHHHHHHTCCEEEEECBHHHHH--TTHHHHHHHHHHHTT-CEEEEECBCCSSC----BHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHcCCCEEEEEECcchhh--CcHHHHHHHHHHHcC-CeEEEEcCccCCC----CHHHHHHHhhhhhccCCC
Confidence 455688899999999999998654221 235688999999999 8776444444433 557888888999999999
Q ss_pred EEEEEcCCHH--HHHHHHHH
Q 008863 234 VFIVLQASLD--MTIHLFTE 251 (550)
Q Consensus 234 ~ii~~~~~~~--~~~~il~~ 251 (550)
.||- .+.+. ++...+..
T Consensus 90 ~Iia-iGGGS~iD~aK~ia~ 108 (385)
T d1rrma_ 90 YLIA-IGGGSPQDTCKAIGI 108 (385)
T ss_dssp EEEE-EESHHHHHHHHHHHH
T ss_pred EEEe-cCCCchhhHHHHHHH
Confidence 9997 54443 33444443
|
| >d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: PrpR receptor domain-like family: PrpR receptor domain-like domain: Propionate catabolism operon regulatory protein PrpR species: Escherichia coli [TaxId: 562]
Probab=83.32 E-value=9.2 Score=30.28 Aligned_cols=137 Identities=14% Similarity=0.244 Sum_probs=87.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhhcCCeEEEEcCCChHHHHHHHHhhccCCccEEeccCCCCCCcccCCCCCeEEEEecC
Q 008863 71 LSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150 (550)
Q Consensus 71 l~~~~~d~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~~~~p~ 150 (550)
.++.+++.. -..+++.+.+.+..+++.+||.-.. ++.. +-+..++|++....+
T Consensus 27 ~~i~v~~~~--~e~av~~~~~~~~~~~~DviISRG~--ta~~---ir~~~~iPVV~I~vs-------------------- 79 (186)
T d2pjua1 27 ANITPIQLG--FEKAVTYIRKKLANERCDAIIAAGS--NGAY---LKSRLSVPVILIKPS-------------------- 79 (186)
T ss_dssp CEEEEECCC--HHHHHHHHHHHTTTSCCSEEEEEHH--HHHH---HHTTCSSCEEEECCC--------------------
T ss_pred ceEEeecCc--HHHHHHHHHHHHHcCCCCEEEECch--HHHH---HHHhCCCCEEEEcCC--------------------
Confidence 344455543 3478888877776679999996322 2222 335568998875544
Q ss_pred cHHhHHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcC
Q 008863 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK 230 (550)
Q Consensus 151 ~~~~~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~ 230 (550)
..+..+++... +.++ ++++++...+. ....+.+.+.+. +.+.... +. +..+....++++++.
T Consensus 80 ~~Dil~al~~a-~~~~-~kiavV~~~~~----~~~~~~~~~ll~----~~i~~~~-~~-------~~~e~~~~v~~l~~~ 141 (186)
T d2pjua1 80 GYDVLQFLAKA-GKLT-SSIGVVTYQET----IPALVAFQKTFN----LRLDQRS-YI-------TEEDARGQINELKAN 141 (186)
T ss_dssp HHHHHHHHHHT-TCTT-SCEEEEEESSC----CHHHHHHHHHHT----CCEEEEE-ES-------SHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHH-HHhC-CCEEEEeCCcc----chHHHHHHHHhC----CceEEEE-ec-------CHHHHHHHHHHHHHC
Confidence 22344555443 3344 67888877654 334677777774 4444333 22 447899999999999
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 008863 231 QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (550)
Q Consensus 231 ~~~~ii~~~~~~~~~~~il~~a~~~g~~~ 259 (550)
+.++|+- .. .....|++.||.+
T Consensus 142 G~~vVVG-~~------~~~~~A~~~Gl~~ 163 (186)
T d2pjua1 142 GTEAVVG-AG------LITDLAEEAGMTG 163 (186)
T ss_dssp TCCEEEE-SH------HHHHHHHHTTSEE
T ss_pred CCCEEEC-Ch------HHHHHHHHcCCCE
Confidence 9999987 43 2357789999964
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Probab=81.25 E-value=3.8 Score=36.74 Aligned_cols=80 Identities=8% Similarity=0.048 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCeEEEEEEEcCCCCCcchhHHHHHHHHhcCCCeEEEEEeecCCCCCCCCChHHHHHHHHHhhcCCCeE
Q 008863 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (550)
Q Consensus 155 ~~al~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~l~~~g~~~v~~~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~~ 234 (550)
...+.++++.+| +++.+|+++..+. .....+.+.+.+++.+ +.+.....+.+.. ..++..+.++.+++.++|.
T Consensus 17 l~~l~~~~~~~g-~k~liV~~~~~~~-~~g~~~~v~~~L~~~~-i~~~~f~~v~~~p----~~~~v~~~~~~~~~~~~D~ 89 (359)
T d1o2da_ 17 LEKRGNIIDLLG-KRALVVTGKSSSK-KNGSLDDLKKLLDETE-ISYEIFDEVEENP----SFDNVMKAVERYRNDSFDF 89 (359)
T ss_dssp HHHHGGGGGGTC-SEEEEEEESSGGG-TSSHHHHHHHHHHHTT-CEEEEEEEECSSC----BHHHHHHHHHHHTTSCCSE
T ss_pred HHHHHHHHHHcC-CeEEEEEcCcHHH-HhhHHHHHHHHHHHcC-CeEEEEcCccCCC----CHHHHHHhhhhccccCCce
Confidence 345667777787 7888999876431 1336789999999999 8765443444433 5578888889999999999
Q ss_pred EEEEcCCH
Q 008863 235 FIVLQASL 242 (550)
Q Consensus 235 ii~~~~~~ 242 (550)
||- .+.+
T Consensus 90 IIa-vGGG 96 (359)
T d1o2da_ 90 VVG-LGGG 96 (359)
T ss_dssp EEE-EESH
T ss_pred EEe-cccc
Confidence 887 4444
|