Citrus Sinensis ID: 008873
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 550 | 2.2.26 [Sep-21-2011] | |||||||
| Q80YA7 | 892 | Dipeptidyl peptidase 8 OS | yes | no | 0.956 | 0.589 | 0.325 | 4e-70 | |
| Q6V1X1 | 898 | Dipeptidyl peptidase 8 OS | yes | no | 0.963 | 0.590 | 0.311 | 2e-68 | |
| Q86TI2 | 863 | Dipeptidyl peptidase 9 OS | no | no | 0.981 | 0.625 | 0.309 | 4e-67 | |
| Q8BVG4 | 862 | Dipeptidyl peptidase 9 OS | no | no | 0.987 | 0.629 | 0.310 | 1e-66 | |
| B2RJX3 | 732 | Prolyl tripeptidyl peptid | yes | no | 0.932 | 0.700 | 0.298 | 9e-61 | |
| Q7MUW6 | 732 | Prolyl tripeptidyl peptid | yes | no | 0.932 | 0.700 | 0.298 | 2e-60 | |
| Q5AZ42 | 773 | Probable dipeptidyl pepti | yes | no | 0.938 | 0.667 | 0.267 | 1e-44 | |
| A1CHP1 | 768 | Probable dipeptidyl pepti | N/A | no | 0.934 | 0.669 | 0.252 | 3e-44 | |
| Q0CXB1 | 914 | Probable dipeptidyl-amino | N/A | no | 0.958 | 0.576 | 0.260 | 2e-43 | |
| A7UKV8 | 775 | Dipeptidyl peptidase 4 OS | N/A | no | 0.950 | 0.674 | 0.253 | 6e-43 |
| >sp|Q80YA7|DPP8_MOUSE Dipeptidyl peptidase 8 OS=Mus musculus GN=Dpp8 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 266 bits (679), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 207/636 (32%), Positives = 296/636 (46%), Gaps = 110/636 (17%)
Query: 1 MDRKTGYWWSLDSKF---------IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 51
DR +GYWW ++ I + + D SE+ I+H + + + YP
Sbjct: 271 FDRYSGYWWCPQAERTPSGGKILRILYEENDESEV---EIIHVTSPMLETRRADSFRYPK 327
Query: 52 AGASNVKVRLG----VVSAAGGPVSWMDLQCGGTDQNYDE--EYLARVNWM-HGNILTAQ 104
G +N KV VV AAGG + +D + + E EY+AR W G +
Sbjct: 328 TGTANPKVTFKMSEIVVDAAGGIIDVIDKELVQPFEILFEGVEYIARAGWTPEGKHAWSI 387
Query: 105 VLNRSQTKLKVLKF----------DIKTGQRKV-----------ILVEELDSWVNLHDCF 143
+L+RSQT L+++ D QR + I E D W+N+HD F
Sbjct: 388 LLDRSQTHLQIVLISPELFIPVEDDAMDRQRLIESVPDSVTPLIIYEETTDIWINIHDIF 447
Query: 144 TPLDKGVTKYSGGFIWASE-KTGFRHLY----------LHDINGTCLGP----------- 181
+ + FI+ASE KTGFRHLY +G P
Sbjct: 448 HVFPQ-THEDEIEFIFASECKTGFRHLYKITSILKESKYKRSSGGLPAPSDFKCPIKEEI 506
Query: 182 -ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 236
IT G+W V G V+EA VYF GT D PLE HLY Y + V+LT
Sbjct: 507 TITSGEWEVLGRHGSNIWVDEARKLVYFEGTKDSPLEHHLYVTS-YANPGEV----VRLT 561
Query: 237 NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ------------------DGSLVL 278
+ H L + F+ + + +P + L L D + L
Sbjct: 562 DRGYSHSCCLSRHCDFFISKYSNQKNPHCVSLYKLSSPEDDPVHKTKEFWATILDSAGPL 621
Query: 279 PLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGP 338
P Y PP+I ++ G LYG LYKP + + G Y T++ +YGGP
Sbjct: 622 PDY--------------TPPEIFSFESTTGFTLYGMLYKPHDLQPG-KKYPTVLFIYGGP 666
Query: 339 CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT 398
VQLV + + R L S G +V +DNRG+ RGLKFE + K+ G+I+ +DQ+
Sbjct: 667 QVQLVNNRFKGVKYFRLNTLASLGYVVVVIDNRGSCHRGLKFEGAFKYKMGQIEIDDQVE 726
Query: 399 GAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 457
G ++L Q + +G++GWSYGGYLS + L + D+F+ A++GAPVT W YDT YT
Sbjct: 727 GLQYLASQYDFIDLDRVGIHGWSYGGYLSLMALMQRSDIFRVAIAGAPVTLWIFYDTGYT 786
Query: 458 EKYMGLPSEDPVGYEYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAAR 514
E+YMG P ++ GY SV K +LLL+HG +DENVHF HT+ L++ LV A
Sbjct: 787 ERYMGHPDQNEQGYYLGSVAMQAEKFPSEPNRLLLLHGFLDENVHFAHTSILLSFLVRAG 846
Query: 515 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550
KPY++ I+P ERH R + E + +++ L
Sbjct: 847 KPYDLQIYPQERHSIRVPESGEHYELHLLHYLQENL 882
|
Dipeptidyl peptidase that cleaves off N-terminal dipeptides from proteins having a Pro or Ala residue at position 2. May play a role in T-cell activation and immune function. Mus musculus (taxid: 10090) EC: 3EC: .EC: 4EC: .EC: 1EC: 4EC: .EC: 5 |
| >sp|Q6V1X1|DPP8_HUMAN Dipeptidyl peptidase 8 OS=Homo sapiens GN=DPP8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 197/632 (31%), Positives = 292/632 (46%), Gaps = 102/632 (16%)
Query: 1 MDRKTGYWWSLDSKF---------IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF 51
DR +GYWW ++ I + + D SE+ I+H + + + YP
Sbjct: 277 FDRYSGYWWCPKAETTPSGGKILRILYEENDESEV---EIIHVTSPMLETRRADSFRYPK 333
Query: 52 AGASNVKVRLGV----VSAAGGPVSWMDLQCGGTDQNYDE--EYLARVNWM-HGNILTAQ 104
G +N KV + + A G + +D + + E EY+AR W G +
Sbjct: 334 TGTANPKVTFKMSEIMIDAEGRIIDVIDKELIQPFEILFEGVEYIARAGWTPEGKYAWSI 393
Query: 105 VLNRSQTKLKVLKF----------DIKTGQRKV-----------ILVEELDSWVNLHDCF 143
+L+RSQT+L+++ D+ QR + I E D W+N+HD F
Sbjct: 394 LLDRSQTRLQIVLISPELFIPVEDDVMERQRLIESVPDSVTPLIIYEETTDIWINIHDIF 453
Query: 144 TPLDKGVTKYSGGFIWASE-KTGFRHLY----------LHDINGTCLGP----------- 181
+ + FI+ASE KTGFRHLY +G P
Sbjct: 454 HVFPQSHEE-EIEFIFASECKTGFRHLYKITSILKESKYKRSSGGLPAPSDFKCPIKEEI 512
Query: 182 -ITEGDWMV----EQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 236
IT G+W V + V+E VYF GT D PLE HLY T +LT
Sbjct: 513 AITSGEWEVLGRHGSNIQVDEVRRLVYFEGTKDSPLEHHLYVVSYVNPGEVT-----RLT 567
Query: 237 NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQL- 295
+ H + + F+ + + +P + L L P P K +
Sbjct: 568 DRGYSHSCCISQHCDFFISKYSNQKNPHCVSLYKLS----------SPEDDPTCKTKEFW 617
Query: 296 -------------EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQL 342
PP+I ++ G LYG LYKP + + G Y T++ +YGGP VQL
Sbjct: 618 ATILDSAGPLPDYTPPEIFSFESTTGFTLYGMLYKPHDLQPGKK-YPTVLFIYGGPQVQL 676
Query: 343 VCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW 402
V + + R L S G +V +DNRG+ RGLKFE + K+ G+I+ +DQ+ G ++
Sbjct: 677 VNNRFKGVKYFRLNTLASLGYVVVVIDNRGSCHRGLKFEGAFKYKMGQIEIDDQVEGLQY 736
Query: 403 LIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 461
L + + +G++GWSYGGYLS + L + D+F+ A++GAPVT W YDT YTE+YM
Sbjct: 737 LASRYDFIDLDRVGIHGWSYGGYLSLMALMQRSDIFRVAIAGAPVTLWIFYDTGYTERYM 796
Query: 462 GLPSEDPVGYEYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYE 518
G P ++ GY SV K +LLL+HG +DENVHF HT+ L++ LV A KPY+
Sbjct: 797 GHPDQNEQGYYLGSVAMQAEKFPSEPNRLLLLHGFLDENVHFAHTSILLSFLVRAGKPYD 856
Query: 519 ILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550
+ I+P ERH R + E + +++ L
Sbjct: 857 LQIYPQERHSIRVPESGEHYELHLLHYLQENL 888
|
Dipeptidyl peptidase that cleaves off N-terminal dipeptides from proteins having a Pro or Ala residue at position 2. May play a role in T-cell activation and immune function. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|Q86TI2|DPP9_HUMAN Dipeptidyl peptidase 9 OS=Homo sapiens GN=DPP9 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 193/624 (30%), Positives = 289/624 (46%), Gaps = 84/624 (13%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEI-------PRFRIMHQGKSSVGSEAQEDHAYPFAG 53
DR TGYWW + + + + I ++H ++ + + YP G
Sbjct: 250 FDRFTGYWWCPTASWEGSEGLKTLRILYEEVDESEVEVIHVPSPALEERKTDSYRYPRTG 309
Query: 54 ASNVKVRLGVVS----AAGGPVSWMDLQCGGTDQNY--DEEYLARVNWMH-GNILTAQVL 106
+ N K+ L + + G VS + + + EY+AR W G A L
Sbjct: 310 SKNPKIALKLAEFQTDSQGKIVSTQEKELVQPFSSLFPKVEYIARAGWTRDGKYAWAMFL 369
Query: 107 NRSQTKLKVL---------------------KFDIKTGQRKVILVEELDSWVNLHDCFTP 145
+R Q L+++ + + Q V+ E + W+N+HD F P
Sbjct: 370 DRPQQWLQLVLLPPALFIPSTENEEQRLASARAVPRNVQPYVVYEEVTNVWINVHDIFYP 429
Query: 146 LDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLG----------------------PI 182
+ + F+ A+E KTGF HLY G +
Sbjct: 430 FPQSEGEDELCFLRANECKTGFCHLYKVTAVLKSQGYDWSEPFSPGEDEFKCPIKEEIAL 489
Query: 183 TEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP---VKL 235
T G+W V G VNE + VYF GT D PLE HLY + EA V+L
Sbjct: 490 TSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVV--------SYEAAGEIVRL 541
Query: 236 TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQL 295
T H + N FV + S+ +PP + + L G PL++QP +
Sbjct: 542 TTPGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKL-SGPDDDPLHKQPRFWASMMEAAS 600
Query: 296 EPPD-----IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT 350
PPD I LYG +YKP + G + T++ VYGGP VQLV +S+
Sbjct: 601 CPPDYVPPEIFHFHTRSDVRLYGMIYKPHALQPGKK-HPTVLFVYGGPQVQLVNNSFKGI 659
Query: 351 VDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLA 409
+R L S G V +D RG+ +RGL+FE ++K+ G+++ EDQ+ G +++ K G
Sbjct: 660 KYLRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQFVAEKYGFI 719
Query: 410 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPV 469
+ + ++GWSYGG+LS + L P VF+ A++GAPVT W YDT YTE+YM +P +
Sbjct: 720 DLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQH 779
Query: 470 GYEYSSVMHHVHKM---KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 526
GYE SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ER
Sbjct: 780 GYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNER 839
Query: 527 HMPRRHRDRIYMEERIWEFIERTL 550
H R + E + F++ L
Sbjct: 840 HSIRCPESGEHYEVTLLHFLQEYL 863
|
Dipeptidyl peptidase that cleaves off N-terminal dipeptides from proteins having a Pro or Ala residue at position 2. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|Q8BVG4|DPP9_MOUSE Dipeptidyl peptidase 9 OS=Mus musculus GN=Dpp9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 193/621 (31%), Positives = 286/621 (46%), Gaps = 78/621 (12%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEI-------PRFRIMHQGKSSVGSEAQEDHAYPFAG 53
DR TG WW + + + + I ++H ++ + + YP G
Sbjct: 249 FDRFTGCWWCPTASWEGSEGLKTLRILYEEVDESEVEVIHVPSPALEERKTDSYRYPRTG 308
Query: 54 ASNVKVRLGVVSAAGGPVSWMDLQCGGT-DQNYDE-----EYLARVNWMH-GNILTAQVL 106
+ N K+ L + + C Q + EY+AR W G A L
Sbjct: 309 SKNPKIALKLAELQTDHQGKIVSSCEKELVQPFSSLFPKVEYIARAGWTRDGKYAWAMFL 368
Query: 107 NRSQTKLKVLKFDI---------------------KTGQRKVILVEELDSWVNLHDCFTP 145
+R Q +L+++ K Q VI E + W+N+HD F P
Sbjct: 369 DRPQQRLQLVLLPPALFIPAVESEAQRQAAARAVPKNVQPFVIYEEVTNVWINVHDIFHP 428
Query: 146 LDKGVTKYSGGFIWASE-KTGFRHLY-------LHDINGT-CLGP--------------I 182
+ + F+ A+E KTGF HLY D + T L P +
Sbjct: 429 FPQAEGQQDFCFLRANECKTGFCHLYRVTVELKTKDYDWTEPLSPTEDEFKCPIKEEVAL 488
Query: 183 TEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238
T G+W V G VNE + VYF GT D PLE HLY + V+LT
Sbjct: 489 TSGEWEVLSRHGSKIWVNEQTKLVYFQGTKDTPLEHHLYVVSY-----ESAGEIVRLTTL 543
Query: 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPP 298
H + + FV + S+ +PP + + L G PL++QP + PP
Sbjct: 544 GFSHSCSMSQSFDMFVSHYSSVSTPPCVHVYKL-SGPDDDPLHKQPRFWASMMEAANCPP 602
Query: 299 D-----IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM 353
D I LYG +YKP + G + T++ VYGGP VQLV +S+ +
Sbjct: 603 DYVPPEIFHFHTRADVQLYGMIYKPHTLQPGRK-HPTVLFVYGGPQVQLVNNSFKGIKYL 661
Query: 354 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKVG 412
R L S G V +D RG+ +RGL FE ++K+ G+++ EDQ+ G +++ K G +
Sbjct: 662 RLNTLASLGYAVVVIDGRGSCQRGLHFEGALKNQMGQVEIEDQVEGLQYVAEKYGFIDLS 721
Query: 413 HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 472
+ ++GWSYGG+LS + L P VF+ A++GAPVT W YDT YTE+YM +P + GYE
Sbjct: 722 RVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQQGYE 781
Query: 473 YSSVMHHVHKM---KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529
SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 782 AGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHSI 841
Query: 530 RRHRDRIYMEERIWEFIERTL 550
R + E + F++ L
Sbjct: 842 RCRESGEHYEVTLLHFLQEHL 862
|
Dipeptidyl peptidase that cleaves off N-terminal dipeptides from proteins having a Pro or Ala residue at position 2. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|B2RJX3|PTP_PORG3 Prolyl tripeptidyl peptidase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ptpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 164/550 (29%), Positives = 260/550 (47%), Gaps = 37/550 (6%)
Query: 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 63
+ G +WS +AF ++D S + I+ S+ YP AG + V +G+
Sbjct: 209 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL---YYPMAGTPSHHVTVGI 265
Query: 64 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKT 122
A G + LQ G E++L ++W NIL +NR+Q + KV +D +T
Sbjct: 266 YHLATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 319
Query: 123 GQ-RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP 181
G+ + + VE +V T L + FIW S + G+ HLYL+D G +
Sbjct: 320 GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQ 375
Query: 182 ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK 241
+T+G+W V G + ++YF T PLE H YC + LT G
Sbjct: 376 VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESGM 429
Query: 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPP 298
H L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 430 HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSYTLLEAKNPDTGYAMPEIR------- 482
Query: 299 DIVQIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQ 356
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V
Sbjct: 483 -TGTIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDI 539
Query: 357 YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGL 416
Y+ KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q IG+
Sbjct: 540 YMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGV 599
Query: 417 YGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSV 476
+GWSYGG+++ + DVF+ V+G PV W+ Y+ Y E+Y P E+P GY+ +++
Sbjct: 600 HGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQENPEGYDAANL 659
Query: 477 MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536
+ +KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+
Sbjct: 660 LKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRV 718
Query: 537 YMEERIWEFI 546
++ E I +
Sbjct: 719 HLYETITRYF 728
|
Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position. Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) (taxid: 431947) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q7MUW6|PTP_PORGI Prolyl tripeptidyl peptidase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=ptpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 164/550 (29%), Positives = 260/550 (47%), Gaps = 37/550 (6%)
Query: 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 63
+ G +WS +AF ++D S + I+ S+ YP AG + V +G+
Sbjct: 209 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL---YYPMAGTPSHHVTVGI 265
Query: 64 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKT 122
A G + LQ G E++L ++W NIL +NR+Q + KV +D +T
Sbjct: 266 YHLATGKTVY--LQTG----EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET 319
Query: 123 GQ-RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP 181
G+ + + VE +V T L + FIW S + G+ HLYL+D G +
Sbjct: 320 GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ----FIWQSRRDGWNHLYLYDTTGRLIRQ 375
Query: 182 ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK 241
+T+G+W V G + ++YF T PLE H YC + LT G
Sbjct: 376 VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESGM 429
Query: 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT---VPRIKRLQLEPP 298
H L + +D S P ++ + ++ GS L + P T +P I+
Sbjct: 430 HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIR------- 482
Query: 299 DIVQIQANDG-TVLYGALYKPDESRYGPPP-YKTLISVYGGPCVQLVCDSWINTVDMRAQ 356
I A DG T LY L P + P Y ++ VYGGP QLV +W ++V
Sbjct: 483 -TGTIMAADGQTPLYYKLTMP--LHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDI 539
Query: 357 YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGL 416
Y+ KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q IG+
Sbjct: 540 YMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGV 599
Query: 417 YGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSV 476
+GWSYGG+++ + DVF+ V+G PV W+ Y+ Y E+Y P E+P GY+ +++
Sbjct: 600 HGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAPQENPEGYDAANL 659
Query: 477 MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536
+ +KG+L+L+HG ID V ++H+ ++A V AR + ++P H DR+
Sbjct: 660 LKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHN-VMGPDRV 718
Query: 537 YMEERIWEFI 546
++ E I +
Sbjct: 719 HLYETITRYF 728
|
Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position. Porphyromonas gingivalis (strain ATCC BAA-308 / W83) (taxid: 242619) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q5AZ42|DPP4_EMENI Probable dipeptidyl peptidase 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dpp4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 150/560 (26%), Positives = 254/560 (45%), Gaps = 44/560 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRI---MHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
W+S DS+ +AF + + +P F + M + + + D YP +N V+L ++
Sbjct: 206 WFSPDSELLAFLTFNETGVPTFTVQYFMDNQEIAPPYPRELDIRYPKVSETNPTVKLNIL 265
Query: 65 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN--ILTAQVLNRSQTKLKVLKFDIKT 122
+ VS + + + E + V W+ L + NR Q + KV+ + +
Sbjct: 266 QLSDNTVSTIPIDVF----DPSELIVGEVAWVTDTHTELAVKAFNRVQDESKVVIVETAS 321
Query: 123 GQRKVILVEE-LDSWVN--LHDCFT-PLDKGVTKYSGGF-IWASEKTGFRHLYLHDINGT 177
G+ K+ + D W++ L + PL G S + + S+ +G+ HLYL +G
Sbjct: 322 GETKIAHERDGTDGWLDNLLSISYVGPLALGSGDASSAYYVDLSDHSGWTHLYLFSTSGG 381
Query: 178 CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA-----KLYPDWNHTLEA- 231
P+TEG+W V IV +++ VY+ T E HLY ++ P + T+EA
Sbjct: 382 DPIPLTEGEWEVTSIVSIDQERELVYYLSTQHHSTERHLYSVSYRTFEITPLVDDTVEAY 441
Query: 232 -PVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
V + G ++ + + + + P L S + +L+ L E L P I
Sbjct: 442 WSVSFSAKAGYYILTYAGPSVPYQELYSVNQTAPLRTLTS--NAALIEKLEEYAL--PNI 497
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT 350
+LE P ++ + + PD+ Y L + YGGP Q V W +
Sbjct: 498 SYFELEIPSGEKLNVMQRLPV---GFSPDKK------YPVLFTPYGGPGAQEVSKRW-QS 547
Query: 351 VDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407
+D A Y+ S L W +DNRGT RG +F + + G+++AEDQ+ A+ K
Sbjct: 548 LDFNA-YIASDPELEYVTWTVDNRGTGYRGREFRSLVAKQLGKLEAEDQVYAAKQAAKLD 606
Query: 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSED 467
HI ++GWSYGGYL+ L F + APV+ W YD+ YTE+YM S +
Sbjct: 607 WVDSEHIAIWGWSYGGYLTGKVLETDSGAFSLGLLTAPVSDWRLYDSMYTERYMKTLSTN 666
Query: 468 PVGYEYSSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVA---ARKPYEILIF 522
GY +++ H ++G L+ HG D+NVHF++ A L + L+ + ++ F
Sbjct: 667 AEGYNTTAIRHTDGFKNVEGGFLIQHGTGDDNVHFQNAAALGDTLIGNGVTPEKMQVQWF 726
Query: 523 PDERHMPRRHRDRIYMEERI 542
D H R + +++ ++
Sbjct: 727 TDSDHSIRYNGGNVFLYRQL 746
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|A1CHP1|DPP4_ASPCL Probable dipeptidyl peptidase 4 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dpp4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 141/558 (25%), Positives = 251/558 (44%), Gaps = 44/558 (7%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRI---MHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
W+S D++++AF + + + +P FR+ M + + + + YP +N V + ++
Sbjct: 207 WFSPDAEYLAFLRFNETGVPTFRVPYYMDNEEVAPPYPRELELRYPKVSQTNPTVEVRLL 266
Query: 65 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM---HGNILTAQVLNRSQTKLKVLKFDIK 121
S A G VS + ++ N + + V W+ H + + NR Q + KV+ D+
Sbjct: 267 SRATGEVSSVSIKAF----NATDLVIGEVAWLTETHSQV-AVKAFNRVQDQQKVVTVDVL 321
Query: 122 TGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG 180
+ + K I + D W++ T + + + +I S+++G+ HL+L + G
Sbjct: 322 SLKTKTISERDGTDGWLDNALSITYIGQIGDSKAEYYIDISDESGWAHLWLFPVAGGRPM 381
Query: 181 PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 240
+T+G+W V I+ +++ VY+ T E H+Y W P+
Sbjct: 382 ALTKGEWEVTAILSIDKQRQLVYYLSTQHHSTERHVYSVS----WKTFTATPLVDDTVAA 437
Query: 241 KHVAVLDHNMRNFVDFHDSLDSPPRIL--------LCSLQDGSLVLPLYEQPLTVPRIKR 292
A ++ + D P + L LC++ + V + +Q T+P+I
Sbjct: 438 VWSASFSSQGGYYILSYRGPDVPYQELYAINSTKPLCTITSNAAVYDVLKQ-YTLPKISY 496
Query: 293 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 352
+L P G L + + S Y L + YGGP Q V +W +
Sbjct: 497 FELRLPS--------GETL-NVMQRLPVSFSPRKKYPILFTPYGGPGAQEVSKAWQS--Q 545
Query: 353 MRAQYLRSK---GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409
Y+ S + W +DNRGT +G +F + GR++A+DQ+ A+ K
Sbjct: 546 TFKSYIASDPELEFVTWTVDNRGTGYKGRRFRGQVAKQLGRLEAQDQVWAAQQAAKLPFI 605
Query: 410 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPV 469
HI ++GWSYGGYL+ + VF V APV+ W YD+ YTE+YM E+
Sbjct: 606 DAEHIAIWGWSYGGYLTGKVIETDSGVFSLGVLTAPVSDWRFYDSMYTERYMKTLQENAN 665
Query: 470 GYEYSSV--MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA---ARKPYEILIFPD 524
GY S++ + ++G +L+ HG D+NVHF++ A L++ LV + ++ F D
Sbjct: 666 GYNASAIWDVAGYKNVRGGVLIQHGTGDDNVHFQNAAALVDRLVGEGVSPDKLQVQWFTD 725
Query: 525 ERHMPRRHRDRIYMEERI 542
H R H +++ ++
Sbjct: 726 SDHGIRYHGGSVFLYRQL 743
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|Q0CXB1|DAPB_ASPTN Probable dipeptidyl-aminopeptidase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dapB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/561 (26%), Positives = 251/561 (44%), Gaps = 34/561 (6%)
Query: 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSE---AQEDH------AYPFAGA 54
+ WWS D+K++AF + + S +P + + + G + ED+ YP AGA
Sbjct: 329 NSATWWSNDAKYVAFLRTNESTVPEYPVQYFLSRPSGKKPLPGLEDYPDVRQIKYPKAGA 388
Query: 55 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLK 114
N V L + V +++ D D+ + V W + + + NR LK
Sbjct: 389 PNPVVNLQFYNVEKNEVFSVEVPDDFAD---DDRIIIEVLWAAESNVLVRATNRESDVLK 445
Query: 115 VLKFDIKTGQRKVILVEEL----DSWVNLHDC--FTPLDKGVTKYSGGFIWASEKTGFRH 168
+ D ++ K++ +E++ WV F P D + + G+I G+ H
Sbjct: 446 IFLIDTESRTGKMVRLEDIVGLDGGWVEPSQSTRFIPADPAAGRPNDGYIDTVIHDGYDH 505
Query: 169 L-YLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226
L Y ++ +T G+W +VE V+ G VYF T + P + H+Y +L +
Sbjct: 506 LAYFTPLDNPEPIMLTTGEWEVVEAPTAVDLRRGLVYFVATKEAPTQRHVYQVQL----D 561
Query: 227 HTLEAPVKLTNGKGK-HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPL 285
+ P+ T+ G HV+ D + + P + ++ + D + E+
Sbjct: 562 GSNLKPLTDTSKPGYYHVSFSDGTAYALLSYQGP-SIPWQAIINTEGDDVVFEETIEENP 620
Query: 286 TVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGP-PPYKTLISVYGGPCVQLVC 344
+ R+ P + DG L +P + P Y L +YGGP Q V
Sbjct: 621 ELARMVETYAIPSKVFSNITIDGFTLQMVERRP--PHFNPHKKYPVLFFLYGGPGSQTVD 678
Query: 345 DSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404
+ T+D ++ + G +V LD RGT G + I+ N G +A DQ+T A+
Sbjct: 679 RKF--TIDFQSYVASNLGYIVVTLDGRGTGFIGREARCIIRGNLGYYEAHDQITAAKMFA 736
Query: 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFP-DVFQCAVSGAPVTSWDGYDTFYTEKYMGL 463
++ + ++GWSYGG+++ TL + FQ ++ APVT W YD+ YTE+YM
Sbjct: 737 EKSYVDESRMAIWGWSYGGFMTLKTLEQDAGQTFQYGMAVAPVTDWRFYDSIYTERYMHT 796
Query: 464 PSEDPVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINAL-VAARKPYEILI 521
P +P GY+ SS+ + + L++HG D+NVH ++T LI+ L ++ + Y++
Sbjct: 797 PQHNPSGYDNSSITDMAALEENVRFLVMHGASDDNVHLQNTLTLIDKLDLSNVQNYDVHF 856
Query: 522 FPDERHMPRRHRDRIYMEERI 542
+PD H H + ER+
Sbjct: 857 YPDSDHSIFFHNAHYMVYERL 877
|
Type IV dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|A7UKV8|DPP4_TRIEQ Dipeptidyl peptidase 4 OS=Trichophyton equinum GN=DPP4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (445), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 141/556 (25%), Positives = 257/556 (46%), Gaps = 33/556 (5%)
Query: 8 WWSLDSKFIAFTQVDSSEIPRFRI---MHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVV 64
W+S D +++A+ + + + +P + I ++ K + + + YP A N V+ ++
Sbjct: 205 WFSPDGEYLAYLRFNETGVPTYTIPYYKNKQKIAPAYPRELEIRYPKVSAKNPTVQFHLL 264
Query: 65 SAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKT 122
+ A S + + + + + V W+ + + + NR Q + K++ +++
Sbjct: 265 NIASSQESTIPVTAFPEN----DLVIGEVAWLSSGHDSVAYRAFNRVQDREKIVSIKVES 320
Query: 123 GQRKVILVEE-LDSWV-NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG 180
+ KVI + D W+ NL D +Y ++ S+ +G+ H+YL+ ++G
Sbjct: 321 KESKVIRERDGTDGWIDNLLSMSYIGDVNGKEY---YVDISDASGWAHIYLYPVDGGKEI 377
Query: 181 PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 240
+T+G+W V I+ V+ +YFT T H+Y ++ + P+
Sbjct: 378 ALTKGEWEVVAILKVDTKKKLIYFTSTKYHSTTRHVYSVS----YDTNVMTPLVNDKEAA 433
Query: 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDI 300
+ A ++ + + P + L + + + + ++K +L
Sbjct: 434 YYTASFSAKGGYYILSYQGPNVPYQELYSTKDSKKPLKTITSNDALLEKLKEYKLPKVSF 493
Query: 301 VQIQANDGTVLYGALYKPDESRYGP-PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
+I+ G L P + P Y L + YGGP Q V +W N++D ++ Y+
Sbjct: 494 FEIKLPSGETLNVKQRLP--PNFNPHKKYPVLFTPYGGPGAQEVSQAW-NSLDFKS-YIT 549
Query: 360 SKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGL 416
S L W +DNRGT +G KF +++ G ++A+DQ+ A+ L+K A HIG+
Sbjct: 550 SDPELEYVTWTVDNRGTGYKGRKFRSAVAKRLGFLEAQDQVFAAKELLKNRWADKDHIGI 609
Query: 417 YGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSV 476
+GWSYGG+L+A TL VF +S APV+ + YD+ YTE+YM + GY ++V
Sbjct: 610 WGWSYGGFLTAKTLETDSGVFTFGISTAPVSDFRLYDSMYTERYMKTVELNADGYSETAV 669
Query: 477 MHHV---HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI---FPDERHMPR 530
H V +KG L+ HG D+NVHF++ A L N L+ + L F D H R
Sbjct: 670 -HKVDGFKNLKGHYLIQHGTGDDNVHFQNAAVLSNTLMNGGVTADKLTTQWFTDSDHGIR 728
Query: 531 RHRDRIYMEERIWEFI 546
D Y +++ + +
Sbjct: 729 YDMDSTYQYKQLAKMV 744
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Contributes to pathogenicity. Trichophyton equinum (taxid: 63418) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 550 | ||||||
| 147835769 | 754 | hypothetical protein VITISV_002739 [Viti | 1.0 | 0.729 | 0.852 | 0.0 | |
| 359490801 | 754 | PREDICTED: dipeptidyl peptidase 8-like [ | 1.0 | 0.729 | 0.852 | 0.0 | |
| 255551275 | 746 | dipeptidyl peptidase IV, putative [Ricin | 1.0 | 0.737 | 0.818 | 0.0 | |
| 224132788 | 551 | predicted protein [Populus trichocarpa] | 1.0 | 0.998 | 0.814 | 0.0 | |
| 356516055 | 770 | PREDICTED: dipeptidyl peptidase 8-like [ | 1.0 | 0.714 | 0.787 | 0.0 | |
| 356509261 | 770 | PREDICTED: dipeptidyl peptidase 8-like [ | 1.0 | 0.714 | 0.784 | 0.0 | |
| 224120800 | 551 | predicted protein [Populus trichocarpa] | 1.0 | 0.998 | 0.803 | 0.0 | |
| 449456387 | 775 | PREDICTED: dipeptidyl peptidase 8-like [ | 0.994 | 0.705 | 0.778 | 0.0 | |
| 357463921 | 773 | Dipeptidyl peptidase [Medicago truncatul | 1.0 | 0.711 | 0.756 | 0.0 | |
| 357463919 | 770 | Dipeptidyl peptidase [Medicago truncatul | 1.0 | 0.714 | 0.756 | 0.0 |
| >gi|147835769|emb|CAN75198.1| hypothetical protein VITISV_002739 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/551 (85%), Positives = 512/551 (92%), Gaps = 1/551 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRK GYWWSLDS+FIAFTQVDSSEIP FRIMHQGKSSVG++AQEDHAYPFAGASNVKVR
Sbjct: 204 MDRKNGYWWSLDSRFIAFTQVDSSEIPLFRIMHQGKSSVGADAQEDHAYPFAGASNVKVR 263
Query: 61 LGVVSAAGGPVSWMDLQCGGT-DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVSAAGGP +WMDL CG D N +EEYLARVNWMHGNILTAQVLNRS +KLK+LKFD
Sbjct: 264 LGVVSAAGGPATWMDLLCGEXHDGNNEEEYLARVNWMHGNILTAQVLNRSHSKLKILKFD 323
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
I TGQRKVILVEE D+WV LHDCFTPLD GV ++SGGFIWASEKTGFRHLYLHD NGTCL
Sbjct: 324 INTGQRKVILVEEQDTWVTLHDCFTPLDVGVNRFSGGFIWASEKTGFRHLYLHDANGTCL 383
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
GPITEGDWMVEQI GVNEA+G VYFTGTLDGPLES+LY AKL+ D N L+AP++LT+GK
Sbjct: 384 GPITEGDWMVEQIAGVNEAAGLVYFTGTLDGPLESNLYSAKLFLDGNEPLQAPLRLTHGK 443
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 299
GKH+ VLDH M++FVD HDSLD PPR+LLCSL DGSLV+PLYEQP TVPR KRLQLEPP+
Sbjct: 444 GKHMVVLDHQMQSFVDIHDSLDFPPRVLLCSLSDGSLVMPLYEQPFTVPRFKRLQLEPPE 503
Query: 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
IVQIQANDGT L+GALYKPDE+R+GPPPYKTLISVYGGP VQLVCDSW+NTVDMRAQYLR
Sbjct: 504 IVQIQANDGTTLFGALYKPDETRFGPPPYKTLISVYGGPSVQLVCDSWMNTVDMRAQYLR 563
Query: 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 419
S+GILVWKLDNRGTARRGLKFE+ +K+N GRIDAEDQLTGAEWLIK+GLAKVGHIGLYGW
Sbjct: 564 SRGILVWKLDNRGTARRGLKFESCLKYNAGRIDAEDQLTGAEWLIKKGLAKVGHIGLYGW 623
Query: 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
SYGGYLSA+TLARFPD+F+CAVSGAPVTSWDGYDTFYTEKYMGLPSE+P GYEYSSVMHH
Sbjct: 624 SYGGYLSAMTLARFPDIFRCAVSGAPVTSWDGYDTFYTEKYMGLPSENPAGYEYSSVMHH 683
Query: 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539
VHK+KG LL+VHGMIDENVHFRHTARL+NALV+A KPYE+LIFPDERHMPRR RDRIYME
Sbjct: 684 VHKIKGSLLIVHGMIDENVHFRHTARLVNALVSAGKPYELLIFPDERHMPRRFRDRIYME 743
Query: 540 ERIWEFIERTL 550
ERIW+FIER L
Sbjct: 744 ERIWDFIERNL 754
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490801|ref|XP_002277892.2| PREDICTED: dipeptidyl peptidase 8-like [Vitis vinifera] gi|302143902|emb|CBI23007.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/551 (85%), Positives = 512/551 (92%), Gaps = 1/551 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRK GYWWSLDS+FIAFTQVDSSEIP FRIMHQGKSSVG++AQEDHAYPFAGASNVKVR
Sbjct: 204 MDRKNGYWWSLDSRFIAFTQVDSSEIPLFRIMHQGKSSVGADAQEDHAYPFAGASNVKVR 263
Query: 61 LGVVSAAGGPVSWMDLQCGGT-DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVSAAGGP +WMDL CG D N +EEYLARVNWMHGNILTAQVLNRS +KLK+LKFD
Sbjct: 264 LGVVSAAGGPATWMDLLCGEMHDGNNEEEYLARVNWMHGNILTAQVLNRSHSKLKILKFD 323
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
I TGQRKVILVEE D+WV LHDCFTPLD GV ++SGGFIWASEKTGFRHLYLHD NGTCL
Sbjct: 324 INTGQRKVILVEEQDTWVTLHDCFTPLDVGVNRFSGGFIWASEKTGFRHLYLHDANGTCL 383
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
GPITEGDWMVEQI GVNEA+G VYFTGTLDGPLES+LY AKL+ D N L+AP++LT+GK
Sbjct: 384 GPITEGDWMVEQIAGVNEAAGLVYFTGTLDGPLESNLYSAKLFLDGNEPLQAPLRLTHGK 443
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 299
GKH+ VLDH M++FVD HDSLD PPR+LLCSL DGSLV+PLYEQP TVPR KRLQLEPP+
Sbjct: 444 GKHMVVLDHQMQSFVDIHDSLDFPPRVLLCSLSDGSLVMPLYEQPFTVPRFKRLQLEPPE 503
Query: 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
IVQIQANDGT L+GALYKPDE+R+GPPPYKTLISVYGGP VQLVCDSW+NTVDMRAQYLR
Sbjct: 504 IVQIQANDGTTLFGALYKPDETRFGPPPYKTLISVYGGPSVQLVCDSWMNTVDMRAQYLR 563
Query: 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 419
S+GILVWKLDNRGTARRGLKFE+ +K+N GRIDAEDQLTGAEWLIK+GLAKVGHIGLYGW
Sbjct: 564 SRGILVWKLDNRGTARRGLKFESCLKYNAGRIDAEDQLTGAEWLIKKGLAKVGHIGLYGW 623
Query: 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
SYGGYLSA+TLARFPD+F+CAVSGAPVTSWDGYDTFYTEKYMGLPSE+P GYEYSSVMHH
Sbjct: 624 SYGGYLSAMTLARFPDIFRCAVSGAPVTSWDGYDTFYTEKYMGLPSENPAGYEYSSVMHH 683
Query: 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539
VHK+KG LL+VHGMIDENVHFRHTARL+NALV+A KPYE+LIFPDERHMPRR RDRIYME
Sbjct: 684 VHKIKGSLLIVHGMIDENVHFRHTARLVNALVSAGKPYELLIFPDERHMPRRFRDRIYME 743
Query: 540 ERIWEFIERTL 550
ERIW+FIER L
Sbjct: 744 ERIWDFIERNL 754
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551275|ref|XP_002516684.1| dipeptidyl peptidase IV, putative [Ricinus communis] gi|223544179|gb|EEF45703.1| dipeptidyl peptidase IV, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/551 (81%), Positives = 502/551 (91%), Gaps = 1/551 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRK GYWWSLDSKFIAFTQVDSS IP FRIMHQGKSSVG E+QEDHAYPFAGASNVKVR
Sbjct: 196 MDRKNGYWWSLDSKFIAFTQVDSSGIPLFRIMHQGKSSVGLESQEDHAYPFAGASNVKVR 255
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVS AGG ++WMDL CGGT++ + ++EYL RVNWM G+ILTAQVLNRS TKL+++KFD
Sbjct: 256 LGVVSIAGGSITWMDLVCGGTEELDNEDEYLTRVNWMRGDILTAQVLNRSHTKLRIIKFD 315
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
IKTGQ KVILVEE D WVNLHDCFTPLDK VTKYSGGFIWASEKTGFRHLYLHD NGTCL
Sbjct: 316 IKTGQGKVILVEEQDKWVNLHDCFTPLDKSVTKYSGGFIWASEKTGFRHLYLHDANGTCL 375
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
GPITEG+WMVEQI GVNEA+G VYFT TLDGPLE +LYC KL+ D + PV+LT+GK
Sbjct: 376 GPITEGEWMVEQIAGVNEAAGLVYFTATLDGPLEFNLYCTKLFRDDSQNFLGPVRLTHGK 435
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 299
GKHV VLDH+MRNFVD HDSLD PPR+L SL DGS+++PLYEQP T+PR KRL+LEPP+
Sbjct: 436 GKHVVVLDHHMRNFVDIHDSLDFPPRVLYTSLHDGSVIMPLYEQPFTIPRFKRLELEPPE 495
Query: 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
IVQ+QA+DGT+LYGALYKPD +++GPPPYKTLISVYGGPCVQ VCDSW+NTVDMRAQ+LR
Sbjct: 496 IVQVQASDGTILYGALYKPDPTKFGPPPYKTLISVYGGPCVQYVCDSWLNTVDMRAQFLR 555
Query: 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 419
SKGILVWKLDNRG+ARRGLKFE S+K+N GRIDAEDQLTG EWLIKQGLAKVGHIG+YGW
Sbjct: 556 SKGILVWKLDNRGSARRGLKFEGSLKYNAGRIDAEDQLTGTEWLIKQGLAKVGHIGVYGW 615
Query: 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
SYGGY+SA+ LARFPDVF+CAVSGAPVTSWDGYDTFYTEKYMGLPS++P GYEYSSVMHH
Sbjct: 616 SYGGYMSAMILARFPDVFRCAVSGAPVTSWDGYDTFYTEKYMGLPSQNPSGYEYSSVMHH 675
Query: 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539
VHK+KG+LLLVHGMIDENVHFRHTARL+NALVAA KPYE+LIFPDERH R HR R+YME
Sbjct: 676 VHKLKGRLLLVHGMIDENVHFRHTARLVNALVAAGKPYELLIFPDERHTLRWHRSRVYME 735
Query: 540 ERIWEFIERTL 550
ERIWEF+ER+L
Sbjct: 736 ERIWEFVERSL 746
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132788|ref|XP_002321410.1| predicted protein [Populus trichocarpa] gi|222868406|gb|EEF05537.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/551 (81%), Positives = 496/551 (90%), Gaps = 1/551 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRK GYWWSLDS+FIAFTQVDSSEIP FRIMHQGKSSVGSEAQEDH YPFAGASNVKV
Sbjct: 1 MDRKNGYWWSLDSQFIAFTQVDSSEIPLFRIMHQGKSSVGSEAQEDHPYPFAGASNVKVH 60
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVS GG V+W+DL CGGT++ + ++EYLAR+NWMHGNIL AQVLNRS +KLK++KFD
Sbjct: 61 LGVVSVHGGSVTWLDLLCGGTEKPDNEDEYLARINWMHGNILIAQVLNRSHSKLKLIKFD 120
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
IK G+++VI VEE W+NLHDCFTPLDKG+TKYS GFIWASEKTGFRHLYLHD NGTCL
Sbjct: 121 IKAGRKEVIYVEEQFPWINLHDCFTPLDKGITKYSEGFIWASEKTGFRHLYLHDANGTCL 180
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
GPITEGDWMVEQI GVNEA+G +YFT T DGPLESHLY AKL+PD + L+APV+LTNGK
Sbjct: 181 GPITEGDWMVEQIAGVNEAAGMIYFTATRDGPLESHLYRAKLFPDEKNALQAPVRLTNGK 240
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 299
GKH VLDH+++NFVD HDSLD PPR+LLCSL DG ++PL+EQ T+PR KRL+LEPP
Sbjct: 241 GKHSVVLDHHLQNFVDIHDSLDCPPRVLLCSLIDGREIMPLFEQAFTIPRFKRLELEPPK 300
Query: 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
IVQIQANDGT+LYGALY+PD +R+GPPPYKTLISVYGGP VQ VCDSWI+TVDMRAQYLR
Sbjct: 301 IVQIQANDGTILYGALYEPDPTRFGPPPYKTLISVYGGPSVQYVCDSWISTVDMRAQYLR 360
Query: 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 419
SKGILVWKLDNRG+ARRGLKFE ++K N GR DAEDQLTGAEWLIKQGLAK GHIGLYGW
Sbjct: 361 SKGILVWKLDNRGSARRGLKFEGALKGNPGRFDAEDQLTGAEWLIKQGLAKAGHIGLYGW 420
Query: 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
SYGGY+SA+ LARFPDVF CAVSGAPVTSWDGYDTFYTEKYMGLP E+P GYEY SVMHH
Sbjct: 421 SYGGYMSAMILARFPDVFCCAVSGAPVTSWDGYDTFYTEKYMGLPYENPTGYEYGSVMHH 480
Query: 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539
VHK+KG+LLLVHGMIDENVHFRHTARL+NALVAA KPYE+LIFPDERHMPRRH DRIYME
Sbjct: 481 VHKLKGRLLLVHGMIDENVHFRHTARLVNALVAAGKPYELLIFPDERHMPRRHTDRIYME 540
Query: 540 ERIWEFIERTL 550
ERIWEF ER L
Sbjct: 541 ERIWEFFERNL 551
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516055|ref|XP_003526712.1| PREDICTED: dipeptidyl peptidase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/551 (78%), Positives = 505/551 (91%), Gaps = 1/551 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRKTGYWWSLDSK+IAFT+VDSSEIP FRIMHQGKSSVG EAQEDH+YPFAGASNVKVR
Sbjct: 220 MDRKTGYWWSLDSKYIAFTEVDSSEIPLFRIMHQGKSSVGLEAQEDHSYPFAGASNVKVR 279
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVS AG ++WM+L CGGT+Q N +EEYLARVNWMHGNILTAQ+LNR TK+K++KFD
Sbjct: 280 LGVVSVAGSSITWMNLLCGGTEQQNNEEEYLARVNWMHGNILTAQILNRHHTKIKIVKFD 339
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
I+TGQRK ILVEE SW+N+HDCFTPLDKGVTK+SGGFIWASEKTGFRHLYLHD NGTCL
Sbjct: 340 IRTGQRKNILVEENSSWINIHDCFTPLDKGVTKFSGGFIWASEKTGFRHLYLHDANGTCL 399
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
GPITEG+WMVEQI GVNEA+G +YFTGTLDGPLES+LYCAKL+ D N L+AP++LT+ K
Sbjct: 400 GPITEGEWMVEQIAGVNEATGLIYFTGTLDGPLESNLYCAKLFVDGNQPLQAPIRLTHSK 459
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 299
GKH+ VLDH+M++FVD HDSL PPR+LLCSL+DGS++ PLYEQ T+PR K+LQLEPP+
Sbjct: 460 GKHIVVLDHHMQSFVDIHDSLGCPPRVLLCSLEDGSVIKPLYEQSFTIPRFKKLQLEPPE 519
Query: 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
IV+IQANDGT LYGALYKPD S++GPPPYKT+I+VYGGP VQLVC+SW++TVD+RAQYLR
Sbjct: 520 IVEIQANDGTTLYGALYKPDASKFGPPPYKTMINVYGGPSVQLVCNSWLSTVDLRAQYLR 579
Query: 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 419
++GILVWKLDNRGTARRGLKFE+ +KH G+IDA+DQLTGAEWL+KQGLAK GHIGLYGW
Sbjct: 580 NQGILVWKLDNRGTARRGLKFESYLKHKLGQIDADDQLTGAEWLVKQGLAKGGHIGLYGW 639
Query: 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
SYGGYLSA+TL+R+PD F+CA++GAPVTSWDGYDTFYTEKYMGLPSE+ +GYE SVM+
Sbjct: 640 SYGGYLSAMTLSRYPDFFKCAIAGAPVTSWDGYDTFYTEKYMGLPSENKLGYESGSVMNQ 699
Query: 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539
V ++KG+LLLVHGMIDENVHFRHTARLINALVAA KPYE+++FPDERHMPRRH DR+YME
Sbjct: 700 VQQLKGRLLLVHGMIDENVHFRHTARLINALVAAGKPYELIVFPDERHMPRRHSDRVYME 759
Query: 540 ERIWEFIERTL 550
R+W+FI+R L
Sbjct: 760 GRMWDFIQRNL 770
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509261|ref|XP_003523369.1| PREDICTED: dipeptidyl peptidase 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/551 (78%), Positives = 498/551 (90%), Gaps = 1/551 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRKTGYWWSLDSK+IAFT+VDSSEIP FRIMHQGKSSVG EAQEDH YPFAGASNVKVR
Sbjct: 220 MDRKTGYWWSLDSKYIAFTEVDSSEIPLFRIMHQGKSSVGLEAQEDHPYPFAGASNVKVR 279
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVS AG ++WMDL CGGT+Q N +EEYLARVNWMHGNILTAQ+LNR TK+K++KFD
Sbjct: 280 LGVVSVAGSSITWMDLLCGGTEQQNNEEEYLARVNWMHGNILTAQILNRHHTKIKIVKFD 339
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
I+TGQRK IL EE SW+N+HDCFTPLDKGVTK+SGGFIWASEKTGFRHLYLHD NGTCL
Sbjct: 340 IRTGQRKNILFEENSSWINIHDCFTPLDKGVTKFSGGFIWASEKTGFRHLYLHDANGTCL 399
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
GPITEG+WMVEQI GVNEA+G +YFTGTLDGPLES+LYC+KL+ D + L+ PV+LT+ K
Sbjct: 400 GPITEGEWMVEQIAGVNEATGLIYFTGTLDGPLESNLYCSKLFVDGSQPLQVPVRLTHSK 459
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 299
GKH+ VLDH+MRNFVD HDSL PPR+LLCSL+DGSL+ PLYEQ T+PR K+LQLEPP+
Sbjct: 460 GKHIVVLDHHMRNFVDIHDSLGCPPRVLLCSLEDGSLIKPLYEQSFTIPRFKKLQLEPPE 519
Query: 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
IV+I+ANDGT LYGALYKPD SR+GPPPYKT+I+VYGGP VQLV +SW++TVD+RAQYLR
Sbjct: 520 IVEIRANDGTTLYGALYKPDASRFGPPPYKTMINVYGGPSVQLVSNSWLSTVDLRAQYLR 579
Query: 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 419
++GILVWKLDNRGTARRGLKFE+ +K G+IDA+DQLTGAEWL+KQGL K GHIGLYGW
Sbjct: 580 NQGILVWKLDNRGTARRGLKFESYLKQKLGQIDADDQLTGAEWLVKQGLTKAGHIGLYGW 639
Query: 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
SYGGYLSA+TL+R+PD F+CA++GAPVTSWDGYDTFYTEKYMGLPSE+ GYE SVM+
Sbjct: 640 SYGGYLSAMTLSRYPDFFKCAIAGAPVTSWDGYDTFYTEKYMGLPSENKSGYESGSVMNQ 699
Query: 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539
VH++KG+LLLVHGMIDENVHFRHTARLINALVAA K YE+++FPDERHMPRRH DR+YME
Sbjct: 700 VHQLKGRLLLVHGMIDENVHFRHTARLINALVAAGKSYELIVFPDERHMPRRHSDRVYME 759
Query: 540 ERIWEFIERTL 550
R+W+FI+R L
Sbjct: 760 GRMWDFIQRNL 770
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120800|ref|XP_002318420.1| predicted protein [Populus trichocarpa] gi|222859093|gb|EEE96640.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/551 (80%), Positives = 493/551 (89%), Gaps = 1/551 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRK GYWWSLDSKFIAFTQVDSSEIP FRIMHQGKSSVGSEAQEDH YPFAGASNVKVR
Sbjct: 1 MDRKNGYWWSLDSKFIAFTQVDSSEIPLFRIMHQGKSSVGSEAQEDHPYPFAGASNVKVR 60
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVS G ++WMDL CGGT + + ++EYLARVNWMHGN+L AQVLNRS +KLK+LKFD
Sbjct: 61 LGVVSVHGDSITWMDLLCGGTKEPDNEDEYLARVNWMHGNVLIAQVLNRSHSKLKLLKFD 120
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
IKTG+++V+ EE W+NLHDCFTPLDKG+TKYSGGFIWASEK+GFRHL +HD NG CL
Sbjct: 121 IKTGKKEVLYAEEQLPWINLHDCFTPLDKGITKYSGGFIWASEKSGFRHLCVHDANGACL 180
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
GPITEG+WMVEQI GVNEA+G +YFT TLDGPLESHLY AKLYP N+ L+APV+LTNGK
Sbjct: 181 GPITEGEWMVEQIAGVNEAAGIIYFTATLDGPLESHLYRAKLYPIENNPLQAPVRLTNGK 240
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 299
GKH VLDH+++NFVD HDSLDSPPR+ LCSL DG ++PL+EQ T+PR KRL+LEPP
Sbjct: 241 GKHSVVLDHHLQNFVDIHDSLDSPPRVSLCSLFDGREIMPLFEQSFTIPRYKRLELEPPK 300
Query: 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
IVQIQANDGT+LYGALY PD +R+GPPPYKT+ISVYGGP VQ VCDSWI T DMRAQYLR
Sbjct: 301 IVQIQANDGTILYGALYDPDPTRFGPPPYKTVISVYGGPGVQYVCDSWIGTADMRAQYLR 360
Query: 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 419
S+GILVWKLDNRG+ARRGLKFE ++K N GR DAEDQLTGAEWLIKQGLAK GHIGL GW
Sbjct: 361 SQGILVWKLDNRGSARRGLKFEGALKGNPGRFDAEDQLTGAEWLIKQGLAKAGHIGLCGW 420
Query: 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
SYGGY+SA+ LARFPDVF CAVSGAPVTSWDGYDTFYTEKYMGLPS++P GYEY SVMHH
Sbjct: 421 SYGGYMSAVILARFPDVFCCAVSGAPVTSWDGYDTFYTEKYMGLPSDNPKGYEYGSVMHH 480
Query: 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539
VHK+KG+LLLVHGMIDENVHFRHTARL+NALVAA KPYE+LIFPDERHMPRRH DRIYME
Sbjct: 481 VHKLKGRLLLVHGMIDENVHFRHTARLVNALVAAGKPYELLIFPDERHMPRRHNDRIYME 540
Query: 540 ERIWEFIERTL 550
ERIWEF +R+L
Sbjct: 541 ERIWEFFQRSL 551
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456387|ref|XP_004145931.1| PREDICTED: dipeptidyl peptidase 8-like [Cucumis sativus] gi|449497343|ref|XP_004160376.1| PREDICTED: dipeptidyl peptidase 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/550 (77%), Positives = 493/550 (89%), Gaps = 3/550 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRK GYWWSLDSK+IAFTQVD+S+IP FRIMHQGKSSVGS+AQEDHAY FAG SN VR
Sbjct: 229 MDRKNGYWWSLDSKYIAFTQVDTSKIPPFRIMHQGKSSVGSDAQEDHAYSFAGTSNAVVR 288
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 120
LGVVS +GGP++WMDL CG T + EEYLARV WMH NIL AQ+LNR TKLK+L+FDI
Sbjct: 289 LGVVSVSGGPITWMDLLCGETGE---EEYLARVCWMHENILIAQILNRLHTKLKILRFDI 345
Query: 121 KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG 180
KTG+RKV+LVEE DSW+NLHDCFTPLDK ++KYSGGFIWASEKTGFRHLYLHD +GTCLG
Sbjct: 346 KTGERKVLLVEEEDSWINLHDCFTPLDKSISKYSGGFIWASEKTGFRHLYLHDGHGTCLG 405
Query: 181 PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 240
PITEGDWMVEQI GVNEA+G VYFTGTLDGPLESHLYCAKL N L+ P++LT+GKG
Sbjct: 406 PITEGDWMVEQIAGVNEATGLVYFTGTLDGPLESHLYCAKLTTAGNTPLDPPIRLTHGKG 465
Query: 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDI 300
KHV VLDH M +FVD HDSLDSPPR+LLCSL+DGS++LP+YEQ L +PRI+RL LEPP++
Sbjct: 466 KHVVVLDHRMGSFVDIHDSLDSPPRVLLCSLKDGSVILPIYEQTLAIPRIERLHLEPPEM 525
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 360
V++QA DGT+LYGALYKP E+ +GPPPYKT+I VYGGP VQLV +SWINTVDMRAQYLRS
Sbjct: 526 VEVQACDGTLLYGALYKPSEAIFGPPPYKTMIIVYGGPSVQLVSNSWINTVDMRAQYLRS 585
Query: 361 KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWS 420
+GILVWKLDNRGTARRGLKFEA++K+N G IDA+DQL GA+WLI+QGLA+ G IGLYGWS
Sbjct: 586 RGILVWKLDNRGTARRGLKFEAALKYNIGYIDADDQLVGAKWLIRQGLARAGEIGLYGWS 645
Query: 421 YGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 480
YGG+LSA++LAR+PD+F+CAVSGAPVTSWDGYDTFYTEKYMGLP+ DP Y+ SSV++H+
Sbjct: 646 YGGFLSAMSLARYPDIFRCAVSGAPVTSWDGYDTFYTEKYMGLPTRDPEVYKRSSVIYHI 705
Query: 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEE 540
KM G LLLVHGMIDENVHFRHTARL+NAL++ARK YE+LIFPDERHMPR+H+DRIYMEE
Sbjct: 706 EKMTGSLLLVHGMIDENVHFRHTARLVNALISARKKYELLIFPDERHMPRQHQDRIYMEE 765
Query: 541 RIWEFIERTL 550
RIWEFI+R L
Sbjct: 766 RIWEFIQRNL 775
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463921|ref|XP_003602242.1| Dipeptidyl peptidase [Medicago truncatula] gi|355491290|gb|AES72493.1| Dipeptidyl peptidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/551 (75%), Positives = 492/551 (89%), Gaps = 1/551 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRKTGYWWSLDSK+IAFT+VD SEIP FRIMHQG+SSVG++AQEDH YPFAGASN K+R
Sbjct: 223 MDRKTGYWWSLDSKYIAFTEVDYSEIPLFRIMHQGRSSVGTDAQEDHPYPFAGASNAKIR 282
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVS AGG +WMDL CGG + + ++EYLARVNWMHGNILTAQ++NR QTK+K++KFD
Sbjct: 283 LGVVSVAGGSTTWMDLVCGGVKELDNEDEYLARVNWMHGNILTAQIINRHQTKIKIVKFD 342
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
I+TGQR+ ILVEE +W+N+HDCFTP DKGVTK+SGGFIWASEK+GFRHLYLHD NG CL
Sbjct: 343 IRTGQRRDILVEENKTWINIHDCFTPFDKGVTKFSGGFIWASEKSGFRHLYLHDANGICL 402
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
GPITEG+WMVEQI GVNEA+G VYFTGTLD PLES+LYCAKL+ D L+AP +LT+ K
Sbjct: 403 GPITEGEWMVEQIAGVNEATGLVYFTGTLDSPLESNLYCAKLFVDGTQPLQAPTRLTHSK 462
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 299
GKH+ VLDH+MR FVD HDSL PPR+LLCSL+DG++++PLYEQ + +P+ K+LQLEPP+
Sbjct: 463 GKHIVVLDHHMRTFVDIHDSLSCPPRVLLCSLEDGTIIMPLYEQQIPIPKSKKLQLEPPE 522
Query: 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
IV+IQ++DGT LYGALYKPD SR+GPPPYKT+I+VYGGP VQLV +SW+NTVD+RAQYLR
Sbjct: 523 IVEIQSDDGTTLYGALYKPDPSRFGPPPYKTMINVYGGPSVQLVSNSWLNTVDLRAQYLR 582
Query: 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 419
+KGILVWKLDNRGT+RRGLKFE +K G+IDA+DQ TGAEWL+K GLA+ GHIGLYGW
Sbjct: 583 NKGILVWKLDNRGTSRRGLKFEGYLKQKLGQIDADDQFTGAEWLVKNGLAEFGHIGLYGW 642
Query: 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
SYGGYLSA+TL+R+PD F+CAV+GAPVTSWDGYDTFYTEKYMGLPSE GY +SVM+H
Sbjct: 643 SYGGYLSAMTLSRYPDFFKCAVAGAPVTSWDGYDTFYTEKYMGLPSEYKSGYARASVMNH 702
Query: 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539
VHKM+G+LL+VHGMIDENVHFRHTARLINALVAA K YE++IFPDERHMPRR+ DR+YME
Sbjct: 703 VHKMRGRLLIVHGMIDENVHFRHTARLINALVAAGKTYELIIFPDERHMPRRYSDRVYME 762
Query: 540 ERIWEFIERTL 550
ER+WEFI+R L
Sbjct: 763 ERMWEFIDRNL 773
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463919|ref|XP_003602241.1| Dipeptidyl peptidase [Medicago truncatula] gi|355491289|gb|AES72492.1| Dipeptidyl peptidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/551 (75%), Positives = 492/551 (89%), Gaps = 1/551 (0%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDRKTGYWWSLDSK+IAFT+VD SEIP FRIMHQG+SSVG++AQEDH YPFAGASN K+R
Sbjct: 220 MDRKTGYWWSLDSKYIAFTEVDYSEIPLFRIMHQGRSSVGTDAQEDHPYPFAGASNAKIR 279
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVS AGG +WMDL CGG + + ++EYLARVNWMHGNILTAQ++NR QTK+K++KFD
Sbjct: 280 LGVVSVAGGSTTWMDLVCGGVKELDNEDEYLARVNWMHGNILTAQIINRHQTKIKIVKFD 339
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
I+TGQR+ ILVEE +W+N+HDCFTP DKGVTK+SGGFIWASEK+GFRHLYLHD NG CL
Sbjct: 340 IRTGQRRDILVEENKTWINIHDCFTPFDKGVTKFSGGFIWASEKSGFRHLYLHDANGICL 399
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
GPITEG+WMVEQI GVNEA+G VYFTGTLD PLES+LYCAKL+ D L+AP +LT+ K
Sbjct: 400 GPITEGEWMVEQIAGVNEATGLVYFTGTLDSPLESNLYCAKLFVDGTQPLQAPTRLTHSK 459
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPD 299
GKH+ VLDH+MR FVD HDSL PPR+LLCSL+DG++++PLYEQ + +P+ K+LQLEPP+
Sbjct: 460 GKHIVVLDHHMRTFVDIHDSLSCPPRVLLCSLEDGTIIMPLYEQQIPIPKSKKLQLEPPE 519
Query: 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR 359
IV+IQ++DGT LYGALYKPD SR+GPPPYKT+I+VYGGP VQLV +SW+NTVD+RAQYLR
Sbjct: 520 IVEIQSDDGTTLYGALYKPDPSRFGPPPYKTMINVYGGPSVQLVSNSWLNTVDLRAQYLR 579
Query: 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGW 419
+KGILVWKLDNRGT+RRGLKFE +K G+IDA+DQ TGAEWL+K GLA+ GHIGLYGW
Sbjct: 580 NKGILVWKLDNRGTSRRGLKFEGYLKQKLGQIDADDQFTGAEWLVKNGLAEFGHIGLYGW 639
Query: 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
SYGGYLSA+TL+R+PD F+CAV+GAPVTSWDGYDTFYTEKYMGLPSE GY +SVM+H
Sbjct: 640 SYGGYLSAMTLSRYPDFFKCAVAGAPVTSWDGYDTFYTEKYMGLPSEYKSGYARASVMNH 699
Query: 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539
VHKM+G+LL+VHGMIDENVHFRHTARLINALVAA K YE++IFPDERHMPRR+ DR+YME
Sbjct: 700 VHKMRGRLLIVHGMIDENVHFRHTARLINALVAAGKTYELIIFPDERHMPRRYSDRVYME 759
Query: 540 ERIWEFIERTL 550
ER+WEFI+R L
Sbjct: 760 ERMWEFIDRNL 770
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 550 | ||||||
| TAIR|locus:2169789 | 746 | AT5G24260 [Arabidopsis thalian | 0.994 | 0.733 | 0.697 | 3.3e-214 | |
| TIGR_CMR|SO_3990 | 763 | SO_3990 "dipeptidyl peptidase | 0.958 | 0.690 | 0.341 | 9.7e-80 | |
| UNIPROTKB|Q487B7 | 752 | CPS_1104 "Dipeptidyl peptidase | 0.950 | 0.695 | 0.326 | 7.1e-77 | |
| TIGR_CMR|CPS_1104 | 752 | CPS_1104 "dipeptidyl peptidase | 0.950 | 0.695 | 0.326 | 7.1e-77 | |
| ZFIN|ZDB-GENE-061013-777 | 885 | dpp9 "dipeptidyl-peptidase 9" | 0.658 | 0.409 | 0.350 | 2.9e-68 | |
| UNIPROTKB|F1P1L1 | 855 | DPP9 "Uncharacterized protein" | 0.658 | 0.423 | 0.356 | 1.5e-66 | |
| UNIPROTKB|E2R8Z1 | 891 | DPP9 "Uncharacterized protein" | 0.658 | 0.406 | 0.350 | 3.4e-66 | |
| UNIPROTKB|Q86TI2 | 863 | DPP9 "Dipeptidyl peptidase 9" | 0.658 | 0.419 | 0.353 | 6.9e-66 | |
| RGD|1310901 | 892 | Dpp8 "dipeptidylpeptidase 8" [ | 0.66 | 0.406 | 0.351 | 9.7e-66 | |
| MGI|MGI:1921638 | 892 | Dpp8 "dipeptidylpeptidase 8" [ | 0.66 | 0.406 | 0.346 | 2.3e-65 |
| TAIR|locus:2169789 AT5G24260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2070 (733.7 bits), Expect = 3.3e-214, P = 3.3e-214
Identities = 387/555 (69%), Positives = 455/555 (81%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDR+ GYWWSLDSKFIA+T+VDSS+IP FRIMHQGK SVGSEAQEDHAYPFAGA N +R
Sbjct: 195 MDRRNGYWWSLDSKFIAYTEVDSSQIPLFRIMHQGKRSVGSEAQEDHAYPFAGALNSTLR 254
Query: 61 LGVVSAAGG-PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGVVS+AGG +WM+L CGG N ++EYL RVNW+ GN+L QVLNRSQ+KLK++ FD
Sbjct: 255 LGVVSSAGGGKTTWMNLVCGGRG-NTEDEYLGRVNWLPGNVLIVQVLNRSQSKLKIISFD 313
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDK-GVTKYSGGFIWASEKTGFRHLYLHDINGTC 178
I TGQ V+L EE D+WV LHDCFTPL+K ++ SGGFIWASE+TGFRHLYL++ +GTC
Sbjct: 314 INTGQGNVLLTEESDTWVTLHDCFTPLEKVPSSRGSGGFIWASERTGFRHLYLYESDGTC 373
Query: 179 LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238
LG IT G+WMVEQI GVNE VYFTGTLDGPLE++LYCAKL N + P++LT+G
Sbjct: 374 LGAITSGEWMVEQIAGVNEPMSLVYFTGTLDGPLETNLYCAKLEAG-NTSRCQPMRLTHG 432
Query: 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPP 298
KGKH+ VLDH M+NFVD HDS+DSPPR+ LCSL DG+++ LYEQ + +K L+LEPP
Sbjct: 433 KGKHIVVLDHQMKNFVDIHDSVDSPPRVSLCSLSDGTVLKILYEQTSPIQILKSLKLEPP 492
Query: 299 DIVQIQANDG-TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQY 357
+ VQIQANDG T LYGA+YKPD S++GPPPYKT+I+VYGGP VQLV DSWINTVDMR QY
Sbjct: 493 EFVQIQANDGKTTLYGAVYKPDSSKFGPPPYKTMINVYGGPSVQLVYDSWINTVDMRTQY 552
Query: 358 LRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIXXX 417
LRS+GILVWKLDNRGTARRGLKFE+ +KHNCG +DAEDQ+TGA+WLI+QGLAK HI
Sbjct: 553 LRSRGILVWKLDNRGTARRGLKFESWMKHNCGYVDAEDQVTGAKWLIEQGLAKPDHIGVY 612
Query: 418 XXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVM 477
A L R+P++F CAVSGAPVTSWDGYD+FYTEKYMGLP+E+ Y SSVM
Sbjct: 613 GWSYGGYLSATLLTRYPEIFNCAVSGAPVTSWDGYDSFYTEKYMGLPTEEE-RYLKSSVM 671
Query: 478 HHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 535
HHV + K KL+LVHGMIDENVHFRHTARL+NALV A K YE+LIFPDERHMPR+ +DR
Sbjct: 672 HHVGNLTDKQKLMLVHGMIDENVHFRHTARLVNALVEAGKRYELLIFPDERHMPRKKKDR 731
Query: 536 IYMEERIWEFIERTL 550
IYME+RIWEFIE+ L
Sbjct: 732 IYMEQRIWEFIEKNL 746
|
|
| TIGR_CMR|SO_3990 SO_3990 "dipeptidyl peptidase IV" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 190/557 (34%), Positives = 295/557 (52%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDR TGYWW+ D IAFT++D S + ++ + + + YP AG +NV+++
Sbjct: 226 MDRMTGYWWAPDESAIAFTRIDESAV---ELVTRNEIYADGIKLTEQRYPAAGKNNVEIQ 282
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKL--KVLK 117
LGVV+ + W+ L D+N D YL RV+W+ L+ Q +R Q KL +++
Sbjct: 283 LGVVTLKNKAIDWVTLS---DDKNKDI-YLPRVDWLPDSKHLSFQWQSRDQQKLDLQLVA 338
Query: 118 FDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT 177
D T + K ++ E D+WVNL++ D K FIWASE+ GF HLYL D+ G
Sbjct: 339 LDSLT-KPKTLVKERSDAWVNLNN-----DLHFLKQQSAFIWASERDGFNHLYLFDLKGK 392
Query: 178 CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
+T+G+W V+++ ++E +G VYFTG D P+E HLY L +E ++++
Sbjct: 393 LKTQLTKGNWAVDELEFIDETAGWVYFTGRKDTPIEKHLYRVPLA---GGNIE---RVSS 446
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTV---PRIKRLQ 294
G H V N ++D+ +SL PP++ L D L EQ P
Sbjct: 447 EAGMHDPVFADNQSVYLDYFNSLSQPPQVSLHG--DKGQHLAWVEQNQVKAGHPLYDYAG 504
Query: 295 L-EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM 353
L + P+ +++A DG +L L+KP G Y ++ VYGGP QLV +SW + D
Sbjct: 505 LWQLPEFKELKAEDGQILQTRLFKPVPFDAGKK-YPAVVRVYGGPHAQLVTNSW-SEQDY 562
Query: 354 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 413
QYL +G +V++LDNRG+A RG KFE I + G + DQ G ++L +
Sbjct: 563 FTQYLVQQGYVVFQLDNRGSAHRGTKFEQVIYRHLGEAEVNDQKVGVDYLRSLPFVDSNN 622
Query: 414 IXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEY 473
+ ++L + PD F+ A+SGAPVT W YDT YTE+Y+ P+ + GYE
Sbjct: 623 VAIYGHSYGGYMALMSLFKAPDYFKAAISGAPVTDWRLYDTHYTERYLAHPASNEQGYEA 682
Query: 474 SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 533
SS+ +V + LL+ HGM D+NV F ++ R+ AL K ++++ +P +H R +
Sbjct: 683 SSLFPYVKNYQSGLLMYHGMADDNVLFENSTRVYKALQDEGKLFQMIDYPGSKHSMRGEK 742
Query: 534 DRIYMEERIWEFIERTL 550
R ++ + +F++R L
Sbjct: 743 VRNHLYRSLADFLDRQL 759
|
|
| UNIPROTKB|Q487B7 CPS_1104 "Dipeptidyl peptidase IV" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 182/557 (32%), Positives = 298/557 (53%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE--DHAYPFAGASNVK 58
M R TGYWWS + K IAF +VD E P ++ ++ + +E E + YP G +NV
Sbjct: 218 MSRMTGYWWSPNEKHIAFLRVD--ETPVKTVI---RNEIYAEKIELIEQRYPATGTNNVH 272
Query: 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLK 117
++L V G + +++L G +++ Y+ RV W+ + ++ Q+ +R Q L +
Sbjct: 273 IQLAVTDIKGKKIRFVEL---GDNKDI---YIPRVKWLSDSKKVSYQLQSRDQKTLTLKT 326
Query: 118 FDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT 177
+++K ++K +LVE+ W+NLH T L T FIWASE+ G++HLY +++ G
Sbjct: 327 YNLKKRRQKTLLVEKSSHWLNLHKDLTFLSDNKT-----FIWASERDGYKHLYHYNLKGE 381
Query: 178 CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
+ +T+G+W+V+ + V+E +G VYFTG D PLE HLY K+ P + E ++T
Sbjct: 382 LISQLTKGEWVVDSLTRVDEKNGWVYFTGRADTPLERHLY--KV-PLSGKSPENVQRITK 438
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT-----VPRIKR 292
G H +++D + +P ++ L S +G + L E +T P
Sbjct: 439 RNGFHSINFSQTSESYIDSFSNTKTPKQVSLHSA-NGEHITWLAENKVTPEHPVAPYYNG 497
Query: 293 LQLEPPDIVQIQANDGTV-LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
L + P+ ++++DG LY LYKP + G Y ++ VYGGP QLV + W
Sbjct: 498 LVM--PEFGSLKSDDGKADLYYKLYKPKNMQPGKK-YPVIVRVYGGPHAQLVTNKW-QGA 553
Query: 352 DMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKV 411
D+ QY+ +G +V++LDNRG+ RG FE I G+++ DQ+TG ++L
Sbjct: 554 DI-TQYMLQQGYIVYQLDNRGSNYRGTAFEFPIYETLGQVEVADQITGVKYLHTLPYVDK 612
Query: 412 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 471
I +T+ + D F+ VSGAPVT W YDT YTE+Y+ P+ + GY
Sbjct: 613 ERIGVFGHSYGGYMALMTMFKAGDYFKAGVSGAPVTDWMLYDTHYTERYLNHPNVNAAGY 672
Query: 472 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR 531
+ SSV +V + G +++ HGM D+NV F +T +LI AL K +E++ +P +H R
Sbjct: 673 QQSSVFPYVSGLSGPMMVYHGMADDNVLFTNTTKLIKALQDEGKLFELMTYPGSKHSMRG 732
Query: 532 HRDRIYMEERIWEFIER 548
+ ++++ I +F +R
Sbjct: 733 KKVKVHLNATIMDFFDR 749
|
|
| TIGR_CMR|CPS_1104 CPS_1104 "dipeptidyl peptidase IV" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 182/557 (32%), Positives = 298/557 (53%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQE--DHAYPFAGASNVK 58
M R TGYWWS + K IAF +VD E P ++ ++ + +E E + YP G +NV
Sbjct: 218 MSRMTGYWWSPNEKHIAFLRVD--ETPVKTVI---RNEIYAEKIELIEQRYPATGTNNVH 272
Query: 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLK 117
++L V G + +++L G +++ Y+ RV W+ + ++ Q+ +R Q L +
Sbjct: 273 IQLAVTDIKGKKIRFVEL---GDNKDI---YIPRVKWLSDSKKVSYQLQSRDQKTLTLKT 326
Query: 118 FDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT 177
+++K ++K +LVE+ W+NLH T L T FIWASE+ G++HLY +++ G
Sbjct: 327 YNLKKRRQKTLLVEKSSHWLNLHKDLTFLSDNKT-----FIWASERDGYKHLYHYNLKGE 381
Query: 178 CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
+ +T+G+W+V+ + V+E +G VYFTG D PLE HLY K+ P + E ++T
Sbjct: 382 LISQLTKGEWVVDSLTRVDEKNGWVYFTGRADTPLERHLY--KV-PLSGKSPENVQRITK 438
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT-----VPRIKR 292
G H +++D + +P ++ L S +G + L E +T P
Sbjct: 439 RNGFHSINFSQTSESYIDSFSNTKTPKQVSLHSA-NGEHITWLAENKVTPEHPVAPYYNG 497
Query: 293 LQLEPPDIVQIQANDGTV-LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
L + P+ ++++DG LY LYKP + G Y ++ VYGGP QLV + W
Sbjct: 498 LVM--PEFGSLKSDDGKADLYYKLYKPKNMQPGKK-YPVIVRVYGGPHAQLVTNKW-QGA 553
Query: 352 DMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKV 411
D+ QY+ +G +V++LDNRG+ RG FE I G+++ DQ+TG ++L
Sbjct: 554 DI-TQYMLQQGYIVYQLDNRGSNYRGTAFEFPIYETLGQVEVADQITGVKYLHTLPYVDK 612
Query: 412 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 471
I +T+ + D F+ VSGAPVT W YDT YTE+Y+ P+ + GY
Sbjct: 613 ERIGVFGHSYGGYMALMTMFKAGDYFKAGVSGAPVTDWMLYDTHYTERYLNHPNVNAAGY 672
Query: 472 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR 531
+ SSV +V + G +++ HGM D+NV F +T +LI AL K +E++ +P +H R
Sbjct: 673 QQSSVFPYVSGLSGPMMVYHGMADDNVLFTNTTKLIKALQDEGKLFELMTYPGSKHSMRG 732
Query: 532 HRDRIYMEERIWEFIER 548
+ ++++ I +F +R
Sbjct: 733 KKVKVHLNATIMDFFDR 749
|
|
| ZFIN|ZDB-GENE-061013-777 dpp9 "dipeptidyl-peptidase 9" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 134/382 (35%), Positives = 202/382 (52%)
Query: 182 ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
+T G+W V G VNE + VYF GT D PLE HLY Y V+LT
Sbjct: 511 LTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVS-YESPGEI----VRLTK 565
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQP-LTVPRIK----R 292
H + N F+ + ++ +PP + + L G+ PL+++P ++ R
Sbjct: 566 PGFSHSCSVSQNFDMFISHYSNVSTPPCVHVYKLT-GADSDPLHKEPEFWASMMEATGCR 624
Query: 293 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 352
PP+I A+ G LYG LYKP + G + T++ VYGGP VQLV +S+
Sbjct: 625 PDYIPPEIFSFPASSGFRLYGMLYKPHNLKPGKK-HPTILFVYGGPQVQLVNNSYKGVKY 683
Query: 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKV 411
+R L S G V +D RG+ +RGLKFE ++K+ G+++ EDQ+ G +++ K +
Sbjct: 684 LRLNTLASLGYAVVVIDGRGSCQRGLKFEGALKNKMGQVEIEDQVEGLQFVAEKYKFIDL 743
Query: 412 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 471
+ + L P++F+ A++GAPVT W YDT YTE+YM +P + GY
Sbjct: 744 SRVAIHGWSYGGFLSLMGLIHRPNIFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQQGY 803
Query: 472 EYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528
E SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 804 EAGSVALHVDKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS 863
Query: 529 PRRHRDRIYMEERIWEFIERTL 550
R + E + F+++ L
Sbjct: 864 IRCPESGEHYEIMLLYFLQQHL 885
|
|
| UNIPROTKB|F1P1L1 DPP9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 136/382 (35%), Positives = 199/382 (52%)
Query: 182 ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
+T G+W V G VNEA+ VYF GT D PLE HLY Y V+LT
Sbjct: 481 LTGGEWEVLARHGSKIWVNEATKLVYFQGTKDTPLEHHLYVVS-YESPGEI----VRLTI 535
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 297
H + N F+ + S+ +PP + + L GS PL++QP + P
Sbjct: 536 PGFSHSCSMSQNFDMFISHYSSVSTPPCVHVYKLS-GSDDDPLHKQPKFWASMMEAASCP 594
Query: 298 PDIV-----QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 352
PD V + LYG +YKP + + G + T++ VYGGP VQLV +S+
Sbjct: 595 PDYVPPEIFHFRTQSDVELYGMVYKPHDVQPGKK-HPTVLFVYGGPQVQLVNNSFKGIKY 653
Query: 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKV 411
+R L S G V +D RG+ +RGL+FE ++K+ G+++ EDQ+ G ++ K G +
Sbjct: 654 LRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLYYVAEKYGFIDL 713
Query: 412 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 471
+ + L P+VF+ A++GAPVT W YDT YTE+YM +P + GY
Sbjct: 714 SRVAIHGWSYGGFLSLMGLICKPNVFKIAIAGAPVTVWMAYDTGYTERYMDIPENNQQGY 773
Query: 472 EYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528
E SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 774 EAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS 833
Query: 529 PRRHRDRIYMEERIWEFIERTL 550
R + E + F++ L
Sbjct: 834 IRCPESGEHYEITLLHFLQEYL 855
|
|
| UNIPROTKB|E2R8Z1 DPP9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 3.4e-66, Sum P(3) = 3.4e-66
Identities = 134/382 (35%), Positives = 196/382 (51%)
Query: 182 ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
+T G+W V G VNE + VYF GT D PLE HLY Y V+LT
Sbjct: 517 LTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVS-YESAGEI----VRLTT 571
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 297
H + N F+ + S+ +PP + + L G PL++QP + P
Sbjct: 572 PGFSHSCSMSQNFDMFISHYSSVGTPPCVHVYKLS-GPDDDPLHKQPRFWASMMEAASCP 630
Query: 298 PDIV-----QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 352
PD V LYG +YKP + G + T++ VYGGP VQLV +S+
Sbjct: 631 PDYVPPEIFHFHTRSDVRLYGMIYKPHAVQPGKK-HPTVLFVYGGPQVQLVNNSFKGIKY 689
Query: 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKV 411
+R L S G V +D RG+ +RGL+FE ++K+ G+++ EDQ+ G +++ K G +
Sbjct: 690 LRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQFVAEKYGFIDL 749
Query: 412 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 471
+ + L P VF+ A++GAPVT W YDT YTE+YM +P + +GY
Sbjct: 750 SRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQLGY 809
Query: 472 EYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528
E SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 810 EAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS 869
Query: 529 PRRHRDRIYMEERIWEFIERTL 550
R + E + F++ L
Sbjct: 870 IRCPESGEHYEVTLLHFLQEYL 891
|
|
| UNIPROTKB|Q86TI2 DPP9 "Dipeptidyl peptidase 9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 6.9e-66, Sum P(3) = 6.9e-66
Identities = 135/382 (35%), Positives = 196/382 (51%)
Query: 182 ITEGDWMVEQIVG----VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
+T G+W V G VNE + VYF GT D PLE HLY + E V+LT
Sbjct: 489 LTSGEWEVLARHGSKIWVNEETKLVYFQGTKDTPLEHHLYVVS----YEAAGEI-VRLTT 543
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 297
H + N FV + S+ +PP + + L G PL++QP + P
Sbjct: 544 PGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKLS-GPDDDPLHKQPRFWASMMEAASCP 602
Query: 298 PDIV-----QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 352
PD V LYG +YKP + G + T++ VYGGP VQLV +S+
Sbjct: 603 PDYVPPEIFHFHTRSDVRLYGMIYKPHALQPGKK-HPTVLFVYGGPQVQLVNNSFKGIKY 661
Query: 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKV 411
+R L S G V +D RG+ +RGL+FE ++K+ G+++ EDQ+ G +++ K G +
Sbjct: 662 LRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQFVAEKYGFIDL 721
Query: 412 GHIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 471
+ + L P VF+ A++GAPVT W YDT YTE+YM +P + GY
Sbjct: 722 SRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQHGY 781
Query: 472 EYSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528
E SV HV K+ +LL++HG +DENVHF HT L++ L+ A KPY++ I+P+ERH
Sbjct: 782 EAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS 841
Query: 529 PRRHRDRIYMEERIWEFIERTL 550
R + E + F++ L
Sbjct: 842 IRCPESGEHYEVTLLHFLQEYL 863
|
|
| RGD|1310901 Dpp8 "dipeptidylpeptidase 8" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 9.7e-66, Sum P(3) = 9.7e-66
Identities = 134/381 (35%), Positives = 192/381 (50%)
Query: 182 ITEGDWMV----EQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
IT G+W V + V+EA VYF GT D PLE HLY Y + V+LT+
Sbjct: 508 ITSGEWEVLGRHGSNIWVDEARKLVYFEGTKDSPLEHHLYVTS-YANPGDV----VRLTD 562
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ--DGSLVLPLYEQPLTV-PRIKRL- 293
H L + F+ + + SP + L L D V E T+ L
Sbjct: 563 RGYSHSCCLSRHCDFFISKYSNQKSPHCVSLYKLSSPDDDPVHKTKEFWATILDSAGPLP 622
Query: 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM 353
PP+I ++ G LYG LYKP + + G Y T++ +YGGP VQLV + +
Sbjct: 623 DYTPPEIFSFESTTGFTLYGMLYKPHDLQPGKK-YPTVLFIYGGPQVQLVNNRFKGVKYF 681
Query: 354 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVG 412
R L S G +V +DNRG+ RGLKFE + K+ G+I+ +DQ+ G ++L Q +
Sbjct: 682 RLNTLASLGYVVVVIDNRGSCHRGLKFEGAFKYKMGQIEIDDQVEGLQYLASQYDFIDLD 741
Query: 413 HIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 472
+ + L + D+F+ A++GAPVT W YDT YTE+YMG P ++ GY
Sbjct: 742 RVGIHGWSYGGYLSLMALMQRSDIFRVAIAGAPVTLWIFYDTGYTERYMGHPDQNEQGYY 801
Query: 473 YSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529
SV K +LLL+HG +DENVHF HT+ L++ LV A KPY++ I+P ERH
Sbjct: 802 LGSVAMQAEKFPSEPNRLLLLHGFLDENVHFAHTSILLSFLVRAGKPYDLQIYPQERHSI 861
Query: 530 RRHRDRIYMEERIWEFIERTL 550
R + E + +++ L
Sbjct: 862 RVPESGEHYELHLLHYLQENL 882
|
|
| MGI|MGI:1921638 Dpp8 "dipeptidylpeptidase 8" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 2.3e-65, Sum P(3) = 2.3e-65
Identities = 132/381 (34%), Positives = 192/381 (50%)
Query: 182 ITEGDWMV----EQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
IT G+W V + V+EA VYF GT D PLE HLY Y + V+LT+
Sbjct: 508 ITSGEWEVLGRHGSNIWVDEARKLVYFEGTKDSPLEHHLYVTS-YANPGEV----VRLTD 562
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ--DGSLVLPLYEQPLTV-PRIKRL- 293
H L + F+ + + +P + L L + V E T+ L
Sbjct: 563 RGYSHSCCLSRHCDFFISKYSNQKNPHCVSLYKLSSPEDDPVHKTKEFWATILDSAGPLP 622
Query: 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM 353
PP+I ++ G LYG LYKP + + G Y T++ +YGGP VQLV + +
Sbjct: 623 DYTPPEIFSFESTTGFTLYGMLYKPHDLQPGKK-YPTVLFIYGGPQVQLVNNRFKGVKYF 681
Query: 354 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVG 412
R L S G +V +DNRG+ RGLKFE + K+ G+I+ +DQ+ G ++L Q +
Sbjct: 682 RLNTLASLGYVVVVIDNRGSCHRGLKFEGAFKYKMGQIEIDDQVEGLQYLASQYDFIDLD 741
Query: 413 HIXXXXXXXXXXXXAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 472
+ + L + D+F+ A++GAPVT W YDT YTE+YMG P ++ GY
Sbjct: 742 RVGIHGWSYGGYLSLMALMQRSDIFRVAIAGAPVTLWIFYDTGYTERYMGHPDQNEQGYY 801
Query: 473 YSSVMHHVHKMKG---KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529
SV K +LLL+HG +DENVHF HT+ L++ LV A KPY++ I+P ERH
Sbjct: 802 LGSVAMQAEKFPSEPNRLLLLHGFLDENVHFAHTSILLSFLVRAGKPYDLQIYPQERHSI 861
Query: 530 RRHRDRIYMEERIWEFIERTL 550
R + E + +++ L
Sbjct: 862 RVPESGEHYELHLLHYLQENL 882
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00037262001 | SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (754 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00029481001 | SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (597 aa) | • | • | 0.524 | |||||||
| GSVIVG00038542001 | RecName- Full=Proline iminopeptidase; EC=3.4.11.5; (331 aa) | • | 0.415 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 550 | |||
| pfam00930 | 348 | pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP I | 2e-70 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 2e-54 | |
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 9e-53 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 2e-07 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 3e-06 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 1e-05 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 1e-04 | |
| COG1073 | 299 | COG1073, COG1073, Hydrolases of the alpha/beta sup | 1e-04 |
| >gnl|CDD|216201 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 2e-70
Identities = 90/267 (33%), Positives = 124/267 (46%), Gaps = 21/267 (7%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHA--YPFAGASNVK 58
+ YWWS D +AF + D SE+P + E + YP AGA N
Sbjct: 100 FGSNSAYWWSPDGSRLAFLRFDESEVPIITLPDYT----DDGPAEVRSIKYPKAGAPNPT 155
Query: 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF 118
V+L V A G + D + + Y+ RV W L Q LNR Q L ++
Sbjct: 156 VKLFVYDLASGKTVELVP---PDDLSDADYYITRVKWTPDEKLLVQWLNRDQNVLDLVLV 212
Query: 119 DIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 178
D +TG+ V+L E D WV LH L + GF+W SE+ G++HLYL+D++G
Sbjct: 213 DTETGRTVVLLEETSDGWVELHQDPVFL-----RDGSGFLWISERDGYKHLYLYDLDGKL 267
Query: 179 LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238
+T G+W V I+GV+E VYFT T D P E HLY L P +LT+
Sbjct: 268 PRQLTSGNWEVTSILGVDEKRDLVYFTATEDSPGERHLYRVSL------DGGEPQRLTDE 321
Query: 239 KGKHV-AVLDHNMRNFVDFHDSLDSPP 264
G H A N + +V + D+PP
Sbjct: 322 SGDHRSASFSPNGKYYVLTYSGPDTPP 348
|
This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry. Length = 348 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-54
Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 7/209 (3%)
Query: 349 NTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408
+ Q L +G +V + RG+ G + + K + G+ + +D + AE+LI QG
Sbjct: 1 PSFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGY 60
Query: 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF---YTEKYMGL-- 463
+ ++G SYGGYL+ L + PD+F+ AV+ PV W Y + +TE+YM
Sbjct: 61 VDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGN 120
Query: 464 PSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 521
P ++ GY Y S +K LLL+HG+ D+ V +L+ AL A K +LI
Sbjct: 121 PWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQAKGKNVLLLI 180
Query: 522 FPDERHMPRRHRDRIYMEERIWEFIERTL 550
FPDE H + R++ R F+ + L
Sbjct: 181 FPDEGHGGGKPRNKREEYARELAFLLKVL 209
|
Length = 212 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 9e-53
Identities = 91/335 (27%), Positives = 148/335 (44%), Gaps = 19/335 (5%)
Query: 221 LYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280
L V+ +G V D + R + S PP I L + + +
Sbjct: 293 SPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDRGEEAKLTSS 352
Query: 281 YEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCV 340
+K+++L P+ V ++NDG ++G LYKP Y ++ ++GGP
Sbjct: 353 NN-----SGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKK-YPLIVYIHGGPSA 406
Query: 341 QLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGA 400
Q + + Q L S G V + RG+ G +F +I+ + G +D ED +
Sbjct: 407 Q-----VGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAV 461
Query: 401 EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY 460
+ L+K L IG+ G SYGGY++ + + P F+ AV+ A W Y TE
Sbjct: 462 DALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR-FKAAVAVAGGVDWLLYFGESTEGL 520
Query: 461 MGLPSE-------DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 513
P E D YE S + + +K LLL+HG D+ V +L++AL
Sbjct: 521 RFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRK 580
Query: 514 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548
KP E+++FPDE H R +R+ + + I ++ +R
Sbjct: 581 GKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKR 615
|
Length = 620 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 41/171 (23%), Positives = 61/171 (35%), Gaps = 19/171 (11%)
Query: 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD 453
+D + AE LIK+G+ +G+ G S GG L L + P++F AV P+ Y
Sbjct: 482 DDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYH 541
Query: 454 TFY-----TEKYMG---LPSEDPVGYEYSSVMHHVHKMKGK-----LLLVHGMIDENVHF 500
+Y G P + YS H +K L+ + D+ VH
Sbjct: 542 LLTAGSSWIAEY-GNPDDPEDRAFLLAYSP----YHNLKPGQKYPPTLITTSLHDDRVHP 596
Query: 501 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEER-IWEFIERTL 550
H + L P + H I E + F+ RTL
Sbjct: 597 AHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647
|
Length = 648 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 10/149 (6%)
Query: 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV 441
S ED L+ +G + L G S GG ++ AR P+ V
Sbjct: 37 DSDGPPRTPYSLEDDAADLAALLDA--LGLGPVVLVGHSLGGAVALAAAARRPERVAGLV 94
Query: 442 -SGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHF 500
P+ + + L + + + + +L++HG D V
Sbjct: 95 LISPPLRDLEELLAADAAALLALLRAALLDADLREALARLTV---PVLVIHGEDDPLVPP 151
Query: 501 RHTARLINALVAARKPYEILIFPDERHMP 529
L A E+++ P H+P
Sbjct: 152 EA----ARRLAEALPGAELVVLPGAGHLP 176
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 33/173 (19%), Positives = 50/173 (28%), Gaps = 47/173 (27%)
Query: 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHI 414
A+ L S+G V +D G AE ++ I
Sbjct: 19 ARALASRGYNVVAVDYPGHGAS------------------LGAPDAEAVLADAPLDPERI 60
Query: 415 GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYS 474
L G S GG ++ + AR P V V A
Sbjct: 61 VLVGHSLGGGVALLLAARDPRVKAAVVLAAGDPPDA------------------------ 96
Query: 475 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527
+ + K+ +L++HG D V L AL P E+++ H
Sbjct: 97 --LDDLAKLTVPVLIIHGTRDGVVPPEEAEALAAAL---PGPAELVVIEGAGH 144
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 26/134 (19%)
Query: 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD 453
D ++L +Q IG+ G+ GG L+ + R P+V + AV ++ G
Sbjct: 94 ADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEV-KAAV------AFYG-- 144
Query: 454 TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 513
GL ++D K+K +LL D + L AL A
Sbjct: 145 --------GLIADDT---------ADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDA 187
Query: 514 RKPYEILIFPDERH 527
++ I+P H
Sbjct: 188 GVKVDLEIYPGAGH 201
|
Length = 236 |
| >gnl|CDD|223999 COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 6/147 (4%)
Query: 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE 466
I ++G S GG L+ + L P++ + + +T E +
Sbjct: 155 TRLDASRIVVWGESLGGALALLLLGANPELARELIDYL-ITPGGFAPLPAPEAPLDTLPL 213
Query: 467 DPVGYEYSSVMHHVHKMKGK-LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 525
V K+ + +LLVHG DE V R L A A +P ++L P
Sbjct: 214 RAVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEA--ARERPKKLLFVPGG 271
Query: 526 RHMPRRHRDRIYME--ERIWEFIERTL 550
H+ + +++ EF+ER L
Sbjct: 272 GHIDLYDNPPAVEQALDKLAEFLERHL 298
|
Length = 299 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 550 | |||
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 100.0 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.96 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.96 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.92 | |
| PRK10566 | 249 | esterase; Provisional | 99.92 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.91 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.91 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.9 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.89 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.89 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.88 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.88 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.88 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.88 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.88 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.87 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.85 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.85 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.85 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.85 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.85 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.84 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.84 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.84 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.84 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.83 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.83 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.83 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.82 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.82 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.81 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.8 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.8 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.8 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.78 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.78 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.77 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.77 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.77 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.76 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.76 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.76 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.76 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| PLN02511 | 388 | hydrolase | 99.76 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.75 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.75 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.75 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.75 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.74 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.74 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.74 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.74 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.74 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.73 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.73 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.73 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.73 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.72 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.72 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.72 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.72 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.71 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.71 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.7 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.7 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.7 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.7 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.7 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.7 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.7 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.7 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.69 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.68 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.68 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.67 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.67 | |
| PLN00021 | 313 | chlorophyllase | 99.67 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.67 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.67 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.66 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.66 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.66 | |
| PLN02578 | 354 | hydrolase | 99.65 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.65 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.64 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.64 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.64 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.64 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.64 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.64 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.63 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.63 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.63 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.62 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.62 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.62 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.62 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.61 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.6 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.58 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.57 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.56 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.56 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.56 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.55 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.5 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.49 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.47 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.47 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.46 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.43 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.41 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.41 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.4 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.39 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.39 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 99.34 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.34 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 99.33 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.33 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 99.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.33 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.3 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.24 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 99.24 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 99.21 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.21 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.18 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 99.16 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 99.15 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 99.14 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.13 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 99.13 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 99.11 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.09 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 99.08 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 99.06 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 99.05 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 99.05 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 99.05 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 99.01 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 99.01 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.0 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 99.0 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.98 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.98 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.93 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.92 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.89 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.87 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.85 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.85 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.85 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.8 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.78 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.77 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.75 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.75 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.71 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 98.68 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.64 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.63 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.6 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.58 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.56 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.54 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.53 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 98.51 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.5 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.49 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.49 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.49 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 98.49 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.48 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.47 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.45 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 98.41 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.41 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 98.41 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 98.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.33 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.21 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 98.18 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.16 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 98.16 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.14 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 98.09 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.06 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.04 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 98.01 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.98 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.95 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 97.95 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.91 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 97.9 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.9 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.88 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.87 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.84 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.82 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.77 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 97.76 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.75 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 97.73 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 97.72 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.71 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 97.68 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.66 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.62 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.61 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.6 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.6 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 97.6 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.57 | |
| PRK10115 | 686 | protease 2; Provisional | 97.56 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.56 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.55 | |
| PTZ00421 | 493 | coronin; Provisional | 97.55 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.53 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 97.52 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.5 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 97.46 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 97.46 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 97.44 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.44 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.44 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.41 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.4 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 97.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.39 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.37 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.37 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.37 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 97.35 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 97.35 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.33 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 97.31 | |
| PTZ00420 | 568 | coronin; Provisional | 97.3 | |
| PTZ00420 | 568 | coronin; Provisional | 97.28 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.24 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.23 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.22 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.18 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.15 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.15 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.13 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.11 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.11 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.09 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 96.98 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.97 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 96.94 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 96.88 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.83 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 96.8 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.8 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.78 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.78 | |
| PTZ00421 | 493 | coronin; Provisional | 96.75 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 96.75 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 96.74 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 96.73 | |
| COG3946 | 456 | VirJ Type IV secretory pathway, VirJ component [In | 96.73 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 96.7 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 96.66 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 96.65 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.64 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.62 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.59 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 96.51 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 96.41 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 96.39 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.38 | |
| PLN02209 | 437 | serine carboxypeptidase | 96.35 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 96.29 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.24 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 96.22 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.17 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.06 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.06 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.02 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 95.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 95.94 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 95.91 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 95.88 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 95.81 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 95.79 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 95.77 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 95.66 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 95.63 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 95.51 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 95.42 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 95.39 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 95.38 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 95.36 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 95.34 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 95.27 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 95.14 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 95.14 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 94.98 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 94.95 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 94.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 94.74 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 94.73 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 94.72 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 94.71 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 94.69 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 94.49 | |
| KOG2521 | 350 | consensus Uncharacterized conserved protein [Funct | 94.49 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 94.43 | |
| PF06850 | 202 | PHB_depo_C: PHB de-polymerase C-terminus; InterPro | 94.37 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 94.35 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 94.26 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 94.19 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 94.18 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 94.03 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 94.02 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 93.97 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 93.85 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 93.42 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 93.37 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 93.28 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 93.26 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 93.23 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 93.21 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 93.2 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 93.08 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.07 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.03 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 92.92 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 92.89 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 92.84 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 92.77 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.35 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 92.28 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 92.24 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 92.2 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 92.06 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 92.0 | |
| PLN02454 | 414 | triacylglycerol lipase | 91.78 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 91.75 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 91.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 91.58 | |
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 91.48 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 91.45 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 91.16 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.02 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 90.83 | |
| PLN02408 | 365 | phospholipase A1 | 90.5 | |
| PLN02571 | 413 | triacylglycerol lipase | 90.38 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 90.21 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 90.03 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 89.92 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 89.39 | |
| PF01083 | 179 | Cutinase: Cutinase; InterPro: IPR000675 Aerial pla | 89.32 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 89.22 | |
| PLN02517 | 642 | phosphatidylcholine-sterol O-acyltransferase | 89.17 | |
| PLN02606 | 306 | palmitoyl-protein thioesterase | 88.92 | |
| PLN02324 | 415 | triacylglycerol lipase | 88.8 | |
| PF06259 | 177 | Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR | 88.77 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 88.76 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 88.7 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 88.66 | |
| PLN00413 | 479 | triacylglycerol lipase | 88.4 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.31 | |
| PLN02802 | 509 | triacylglycerol lipase | 88.22 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 88.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 88.19 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 88.19 | |
| PLN02633 | 314 | palmitoyl protein thioesterase family protein | 88.04 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 87.58 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 87.14 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 87.13 | |
| PLN02162 | 475 | triacylglycerol lipase | 86.55 | |
| PLN02753 | 531 | triacylglycerol lipase | 86.23 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 86.19 | |
| KOG2369 | 473 | consensus Lecithin:cholesterol acyltransferase (LC | 86.04 | |
| PLN02761 | 527 | lipase class 3 family protein | 86.03 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 85.74 | |
| PLN02934 | 515 | triacylglycerol lipase | 85.72 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 84.81 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 84.68 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 84.63 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 84.54 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 83.66 | |
| PLN02310 | 405 | triacylglycerol lipase | 83.54 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 83.47 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 83.4 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 83.14 | |
| PLN03037 | 525 | lipase class 3 family protein; Provisional | 82.99 | |
| PLN02719 | 518 | triacylglycerol lipase | 82.62 | |
| PF15525 | 200 | DUF4652: Domain of unknown function (DUF4652) | 82.53 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 82.12 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 82.09 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 81.98 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 81.13 | |
| KOG2541 | 296 | consensus Palmitoyl protein thioesterase [Lipid tr | 81.09 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 81.0 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 80.93 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 80.68 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 80.51 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 80.48 | |
| PLN02213 | 319 | sinapoylglucose-malate O-sinapoyltransferase/ carb | 80.43 | |
| PF09994 | 277 | DUF2235: Uncharacterized alpha/beta hydrolase doma | 80.1 |
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=515.60 Aligned_cols=538 Identities=41% Similarity=0.652 Sum_probs=450.1
Q ss_pred CCccceEEEcCCC----CeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC---CceEE
Q 008873 1 MDRKTGYWWSLDS----KFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG---GPVSW 73 (550)
Q Consensus 1 ~~~~~~~~wSPdg----~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~---~~~~~ 73 (550)
|+|+.++||||-+ .+|+|.-.|++.++.+..+... ...++...++||++|+.|+++.|.++.+.+ |+...
T Consensus 264 fdR~~GyWW~p~s~~~~~rIlYeeVdesev~V~h~~s~~---~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~ 340 (867)
T KOG2281|consen 264 FDRFEGYWWSPPSGLKILRILYEEVDESEVEVIHVPSPV---LGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYD 340 (867)
T ss_pred HHhhcceeecCCCCCceEEEEeeecChhheEEEeccCcc---cCCCccccccCCcCCCCCceeeEEEEEEeeccccceec
Confidence 7899999999743 4788888888777555554432 234788899999999999999999988887 55443
Q ss_pred EEc---ccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCce---------------------EEE
Q 008873 74 MDL---QCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQR---------------------KVI 128 (550)
Q Consensus 74 l~~---~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~---------------------~~l 128 (550)
+.+ ..+..-+..+-.|+..+-|.|||+ .++.+++|.|.+.+|.+++.+.... ..+
T Consensus 341 v~~kdlv~~~~~~f~~~EYI~Ragwtpdgkyvwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~vi 420 (867)
T KOG2281|consen 341 VPLKDLVQPFHCLFEDVEYIARAGWTPDGKYVWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVI 420 (867)
T ss_pred cchhhcccccccccccceeeeeccccCCCcEEEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceE
Confidence 332 111112344447999999999999 6778899999999999999886544 566
Q ss_pred EEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC----------------------ceeecccccC
Q 008873 129 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING----------------------TCLGPITEGD 186 (550)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~----------------------~~~~~lT~~~ 186 (550)
.++..+.|++.+..|.+.+-......-.|++.++..||.|||.+.... ++...||+|+
T Consensus 421 yee~sd~winiHd~f~~~~~~~~e~~~~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSge 500 (867)
T KOG2281|consen 421 YEEPSDGWINIHDIFHPLPQSTHEASYPFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGE 500 (867)
T ss_pred EecCCCceEEhhhcccccccCCccceeeEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccc
Confidence 777788999999999888644322222389999999999999987422 2356789999
Q ss_pred eEEEEEE--eEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCC
Q 008873 187 WMVEQIV--GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPP 264 (550)
Q Consensus 187 ~~~~~~~--~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~ 264 (550)
|+|.... +++.-.+.+||.++.++|.+.+||++...+.| +..+||...-.+.+.++-+++.++..+++...||
T Consensus 501 weVl~r~Gi~VdE~~~LVYf~gt~d~PlE~hLyvvsye~~g-----~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~ 575 (867)
T KOG2281|consen 501 WEVLARHGIWVDEVRKLVYFVGTKDTPLEHHLYVVSYENPG-----EIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPP 575 (867)
T ss_pred eeehhhcCeeecccceEEEEEccCCCCceeeEEEEEEecCC-----ceeeccCCCcccchhhhhhhhhHhhhhhcCCCCc
Confidence 9986543 36777889999999999999999999985344 6789998766788889999999888889999999
Q ss_pred EEEEEEcCCCceeEeccCCCCChhhhh-----cCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCC
Q 008873 265 RILLCSLQDGSLVLPLYEQPLTVPRIK-----RLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPC 339 (550)
Q Consensus 265 ~l~~~~~~~g~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~ 339 (550)
.+.++.+..++..... ........+. ...+..+|-+.|.+..|..+.+.+|+|.+.+++ +|||++++++|||+
T Consensus 576 cv~~y~ls~~~~~~l~-~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pg-kkYptvl~VYGGP~ 653 (867)
T KOG2281|consen 576 CVSLYSLSWPENDPLP-KQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPG-KKYPTVLNVYGGPG 653 (867)
T ss_pred eEEEEeccCCccCccc-chhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCC-CCCceEEEEcCCCc
Confidence 9999988776642221 2111222222 233444577888998899999999999998665 68999999999999
Q ss_pred ceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEE
Q 008873 340 VQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYG 418 (550)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G 418 (550)
.|.+.+.|...-......|+++||.|+.+|.||+-..|..|+..+...+|+.+++|+++++++|+++ +++|.+||+|.|
T Consensus 654 VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhG 733 (867)
T KOG2281|consen 654 VQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHG 733 (867)
T ss_pred eEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEec
Confidence 9999999976555567889999999999999999999999999999999999999999999999998 589999999999
Q ss_pred echhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCC---CcEEEEecCCC
Q 008873 419 WSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK---GKLLLVHGMID 495 (550)
Q Consensus 419 ~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~---~P~lii~G~~D 495 (550)
||||||+++++++++|++|+++|+++|+++|..|++.|+|+|||.|..+...|.+.|...++.++. ..+|++||.-|
T Consensus 734 WSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliD 813 (867)
T KOG2281|consen 734 WSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLID 813 (867)
T ss_pred cccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999985 46999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 496 ENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 496 ~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++|++.+...+..+|.++|++.++++||++.|++..++..+.+..+++.|+++
T Consensus 814 ENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 814 ENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred cchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999986
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=467.54 Aligned_cols=530 Identities=28% Similarity=0.455 Sum_probs=438.1
Q ss_pred CccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCC
Q 008873 2 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT 81 (550)
Q Consensus 2 ~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 81 (550)
....++||||||.++||...++++++.+.++.+.+.. ..+....++||++|.+||.+.|+++|+.......+.. +.
T Consensus 207 ~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~~-~yp~~~~~~ypk~g~~np~v~l~v~~~~~~~~~~~~~---~~ 282 (755)
T KOG2100|consen 207 SSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDDD-QYPKSTNFHYPKAGAPNPAVSLFVVDLHDPPRLGIPP---PT 282 (755)
T ss_pred ccCccceeCCCCceeEEEEecccccceEEeccccccc-cCcccceeecCCCCCCCCeEEEEEEeCCCceeeccCC---cc
Confidence 3567899999999999999999999999999987762 2256678899999999999999999966543322100 11
Q ss_pred CCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-ceeeccCccccCCCCCccCCCc-EEE
Q 008873 82 DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGVTKYSGG-FIW 159 (550)
Q Consensus 82 ~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (550)
.....+.++....|.-+.++++.+.+|.++...+-+|+.. +.++.......+ +|+..... .+.. .++... +.+
T Consensus 283 ~~~~~~~~~~~~~W~~~~~~~~~~~~r~~~~~~~~~cd~~-~~~~~~~~~~~~~~W~~~~~~-~~~~---~~d~~~~~~~ 357 (755)
T KOG2100|consen 283 NQRSGEYYVTNVKWDTTEKVLVVWTNREQNISVETLCDTP-GICRVVYEESSDGGWVEHQNV-EPVF---SSDGSSYLKV 357 (755)
T ss_pred ccccCceEEEEEEEecCccEEEEEEccCCCeeeeEEecCc-ccceeeEeccccccccccccc-cceE---eecCCceeEE
Confidence 2244577899999999999999999999988888899888 777666665555 48865431 1110 122222 444
Q ss_pred EEccCC-ccEEEEEeCCCc-eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 160 ASEKTG-FRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 160 ~s~~~g-~~~l~~~~~~~~-~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
.+...+ +.|+..+...++ ..+.||.|+|.+..+..++.+.+.++|.+...++..++||++++ ... ....+++
T Consensus 358 ~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~--~~~----~~~~lt~ 431 (755)
T KOG2100|consen 358 DSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISL--GSG----TVESLTC 431 (755)
T ss_pred EeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEc--ccc----ccccccc
Confidence 555555 899988887666 78899999999988888888999999999998888999999998 322 2334555
Q ss_pred CC-----ceEEEEECCCCCEEEEeecCCCCCC-EEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEE
Q 008873 238 GK-----GKHVAVLDHNMRNFVDFHDSLDSPP-RILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVL 311 (550)
Q Consensus 238 ~~-----~~~~~~~s~dg~~l~~~~s~~~~p~-~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 311 (550)
.. ...++++++..++++..++.+..|. .+-+.....-+....|+.+......+....++..+...+.. +|...
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~-~~~~~ 510 (755)
T KOG2100|consen 432 SLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFGKIEI-DGITA 510 (755)
T ss_pred cCCCCcceEEEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccCCcceeEEEEe-ccEEE
Confidence 42 2456678888899998888876663 33333333333356788877777777778888888777777 88999
Q ss_pred EEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCC
Q 008873 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRI 391 (550)
Q Consensus 312 ~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~ 391 (550)
.+.++.|++.... +|+|+||.+||||+++.+...|...|. ...+...|++|+.+|+||+|++|.++..++.+++|..
T Consensus 511 ~~~~~lP~~~~~~-~kyPllv~~yGGP~sq~v~~~~~~~~~--~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ 587 (755)
T KOG2100|consen 511 NAILILPPNFDPS-KKYPLLVVVYGGPGSQSVTSKFSVDWN--EVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDV 587 (755)
T ss_pred EEEEecCCCCCCC-CCCCEEEEecCCCCcceeeeeEEecHH--HHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCc
Confidence 9999999987544 699999999999999988888877664 3456789999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC-CeeEEEEEcCCcCCcccccchhhhhccCCCCCCccc
Q 008873 392 DAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP-DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 470 (550)
Q Consensus 392 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 470 (550)
+++|++.+++++.+.+++|.+||+|+|||+|||++++++...+ +.|+|+++++|++||..++..++++++|.|.++...
T Consensus 588 ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~ 667 (755)
T KOG2100|consen 588 EVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKG 667 (755)
T ss_pred chHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccch
Confidence 9999999999999999999999999999999999999999887 899999999999999999999999999999999888
Q ss_pred cccCChhhhhhcCCCcE-EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 471 YEYSSVMHHVHKMKGKL-LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 471 ~~~~~~~~~~~~i~~P~-lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
|.+.++..++..++.|. |++||+.|++||++++.+++++|+.+|+++++++||+++|++...+...+++..+..||..+
T Consensus 668 y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~ 747 (755)
T KOG2100|consen 668 YEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDC 747 (755)
T ss_pred hhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHH
Confidence 99999999999999777 99999999999999999999999999999999999999999998888899999999999865
Q ss_pred C
Q 008873 550 L 550 (550)
Q Consensus 550 l 550 (550)
+
T Consensus 748 ~ 748 (755)
T KOG2100|consen 748 F 748 (755)
T ss_pred c
Confidence 3
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=407.32 Aligned_cols=496 Identities=24% Similarity=0.299 Sum_probs=344.7
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||+|+++++.........+ +.+ ......+.+-..+.......++++|.++ +...+ .
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~---------~ 164 (620)
T COG1506 104 SDARWSPDGDRIAFLTAEGASKRD------GGD---HLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKL---------G 164 (620)
T ss_pred ccceeCCCCCeEEEEecccccccC------Cce---eeeecccceeecCCCCcccceEEEccCc-ccccc---------c
Confidence 456799999999994322211000 000 0111122222223223457789999987 33222 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCC--C-ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQ--T-KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWAS 161 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~--~-~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 161 (550)
.....+..+.|.+|++.++....... . ....+.....+++...++..... . . .+.+. .++..+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~-----~~gk~~~~~~ 234 (620)
T COG1506 165 LGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPGEGS--I-S--KLAFD-----ADGKSIALLG 234 (620)
T ss_pred CCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEcCCCce--e-e--eeeeC-----CCCCeeEEec
Confidence 22344556677777776665544332 1 22333333356666665543211 1 0 01110 1222244443
Q ss_pred ccC--Cc---cEEEEEeCCCceeec-ccccC--eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCe
Q 008873 162 EKT--GF---RHLYLHDINGTCLGP-ITEGD--WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPV 233 (550)
Q Consensus 162 ~~~--g~---~~l~~~~~~~~~~~~-lT~~~--~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~ 233 (550)
... |+ ..+++++.+.++... +..++ +..... ...-++..++|.+.... ....++.+.. .+. . .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~l~~~~~--~~~----~-~ 305 (620)
T COG1506 235 TESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAV-EGGLDGDGLLFIATDGG-GSSPLFRVDD--LGG----G-V 305 (620)
T ss_pred cCCccCccccceEEEEeccccccceeeccCCcccCcHHh-ccccCCCcEEEEEecCC-CceEEEEEec--cCC----c-e
Confidence 321 32 355555522222221 12212 111111 12246677888888742 2467777665 221 1 2
Q ss_pred eeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEE
Q 008873 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYG 313 (550)
Q Consensus 234 ~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 313 (550)
.+...+......|+.+++.+++.++++..|+++++++. ++..+.+.. ....+.+..+.++|.+++++.||.+|++
T Consensus 306 ~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~---~~~~~~~~~~~~~e~~~~~~~dG~~i~~ 380 (620)
T COG1506 306 EGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSS---NNSGLKKVKLAEPEPVTYKSNDGETIHG 380 (620)
T ss_pred eeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeec---ccccccccccCCceEEEEEcCCCCEEEE
Confidence 22222223333455599999999999999999999986 332232222 3356667889999999999999999999
Q ss_pred EEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCch
Q 008873 314 ALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDA 393 (550)
Q Consensus 314 ~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~ 393 (550)
++++|.+.... +++|+||++||||..+.. ..+....+.|+++||+|+.+|+||++|+|.+|......++|..++
T Consensus 381 ~l~~P~~~~~~-k~yP~i~~~hGGP~~~~~-----~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~ 454 (620)
T COG1506 381 WLYKPPGFDPR-KKYPLIVYIHGGPSAQVG-----YSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDL 454 (620)
T ss_pred EEecCCCCCCC-CCCCEEEEeCCCCccccc-----cccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccH
Confidence 99999987433 569999999999976642 245557899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCC-------CC
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP-------SE 466 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~-------~~ 466 (550)
+|++++++++.+++.+|++||+|+|+||||||+++++++.+ +|+|+++.++.++|..+...+.+.+...+ +.
T Consensus 455 ~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (620)
T COG1506 455 EDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPE 533 (620)
T ss_pred HHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCCCccc
Confidence 99999999999999999999999999999999999999866 89999999998888766554444433222 11
Q ss_pred CccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 467 DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 467 ~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
+.+.|...||+.+++++++|+|||||+.|.+||++|+++|+++|+++|+++++++||+++|++..+++....++.+++||
T Consensus 534 ~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~ 613 (620)
T COG1506 534 DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWF 613 (620)
T ss_pred ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhC
Q 008873 547 ERTL 550 (550)
Q Consensus 547 ~~~l 550 (550)
++||
T Consensus 614 ~~~~ 617 (620)
T COG1506 614 KRHL 617 (620)
T ss_pred HHHh
Confidence 9986
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=389.56 Aligned_cols=481 Identities=15% Similarity=0.149 Sum_probs=334.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++|||... ....+ ..+|++.|+++|+...-.+ .
T Consensus 130 ~~~~~Spdg~~la~~~d-~~G~E------------------------------~~~l~v~d~~tg~~l~~~i-------~ 171 (686)
T PRK10115 130 GGMAITPDNTIMALAED-FLSRR------------------------------QYGIRFRNLETGNWYPELL-------D 171 (686)
T ss_pred eEEEECCCCCEEEEEec-CCCcE------------------------------EEEEEEEECCCCCCCCccc-------c
Confidence 56789999999999843 32222 3578999999986321111 1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecC--CCceEEEEEECCCC--ceEEEEEeecCc-ee----eccCccccCC--------
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRS--QTKLKVLKFDIKTG--QRKVILVEELDS-WV----NLHDCFTPLD-------- 147 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~--~~~~~l~~~~~~~g--~~~~l~~~~~~~-~~----~~~~~~~~~~-------- 147 (550)
. .. ..+.|++||+.+++...+. ....+||+.++.++ +.+.|.++.+.. |. .....+....
T Consensus 172 ~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~ 248 (686)
T PRK10115 172 N-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSE 248 (686)
T ss_pred C-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCcccc
Confidence 1 11 4589999999777765543 24478999999998 566676643221 11 0000000000
Q ss_pred ----------CCC--------------ccCCCcEEEEEccC-CccEEEEEeCC-Cceeeccccc--CeEEEEEEeEeecC
Q 008873 148 ----------KGV--------------TKYSGGFIWASEKT-GFRHLYLHDIN-GTCLGPITEG--DWMVEQIVGVNEAS 199 (550)
Q Consensus 148 ----------~~~--------------~~~~~~~~~~s~~~-g~~~l~~~~~~-~~~~~~lT~~--~~~~~~~~~~s~dg 199 (550)
..+ ....+.+++.++.+ ....|+.+++. .++.+.|... ++.+.++. + .+
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~-~--~~ 325 (686)
T PRK10115 249 VLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFT-L--FT 325 (686)
T ss_pred EEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEE-E--EC
Confidence 000 00001133333332 24456666654 2344444443 34454433 3 36
Q ss_pred CEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC-CCCceE-EEEEC--CCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 200 GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-NGKGKH-VAVLD--HNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 200 ~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt-~~~~~~-~~~~s--~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+.|++..+.++. ..|+.++. .+. .+..|+ ...... ....+ ++++.+++.++++..|+++|.++..+++
T Consensus 326 ~~l~~~~~~~g~--~~l~~~~~--~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 326 DWLVVEERQRGL--TSLRQINR--KTR----EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CEEEEEEEeCCE--EEEEEEcC--CCC----ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 789998887764 67888886 333 445555 222222 22334 6677899999999999999999997765
Q ss_pred eeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHh
Q 008873 276 LVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA 355 (550)
Q Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~ 355 (550)
.+.++... .+.++...+ .++.+++++.||.+|+++++.++... ..++.|+||++|||++... .+.|....
T Consensus 398 -~~~l~~~~--~~~~~~~~~-~~e~v~~~s~DG~~Ip~~l~~~~~~~-~~~~~P~ll~~hGg~~~~~-----~p~f~~~~ 467 (686)
T PRK10115 398 -RRVLKQTE--VPGFDAANY-RSEHLWITARDGVEVPVSLVYHRKHF-RKGHNPLLVYGYGSYGASI-----DADFSFSR 467 (686)
T ss_pred -EEEEEecC--CCCcCcccc-EEEEEEEECCCCCEEEEEEEEECCCC-CCCCCCEEEEEECCCCCCC-----CCCccHHH
Confidence 45555432 123443344 88999999999999999665544321 2256799999999998764 23455567
Q ss_pred HHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC
Q 008873 356 QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 435 (550)
Q Consensus 356 ~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~ 435 (550)
+.|+++||+|+.+|+||+|++|+.|........+..+++|+++++++|++++++|++|++|+|.|+||+++.+++.++|+
T Consensus 468 ~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pd 547 (686)
T PRK10115 468 LSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPE 547 (686)
T ss_pred HHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChh
Confidence 88999999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCcCCccccc---c---hhhh-hccCCCCCC--ccccccCChhhhhhcCCCc-EEEEecCCCCCCChHHHHH
Q 008873 436 VFQCAVSGAPVTSWDGYD---T---FYTE-KYMGLPSED--PVGYEYSSVMHHVHKMKGK-LLLVHGMIDENVHFRHTAR 505 (550)
Q Consensus 436 ~~~~~v~~~~~~~~~~~~---~---~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~i~~P-~lii~G~~D~~v~~~~~~~ 505 (550)
+|+|+|+..|+.|+..+. . ...+ ...|.|++. .+.+.+.||+.++++++.| +||+||.+|.+||+.++.+
T Consensus 548 lf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k 627 (686)
T PRK10115 548 LFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAK 627 (686)
T ss_pred heeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHH
Confidence 999999999999986431 1 1111 223777643 2345679999999999999 6777999999999999999
Q ss_pred HHHHHHHcCCCeEEEEc---CCCCCcCCCCCcHHHH---HHHHHHHHHHh
Q 008873 506 LINALVAARKPYEILIF---PDERHMPRRHRDRIYM---EERIWEFIERT 549 (550)
Q Consensus 506 ~~~~l~~~~~~~~~~~~---p~~~H~~~~~~~~~~~---~~~~~~fl~~~ 549 (550)
++++|++++.+.+++++ +++||+. ..++... ....+.||...
T Consensus 628 ~~a~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~ 675 (686)
T PRK10115 628 WVAKLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIAL 675 (686)
T ss_pred HHHHHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888 9999984 2333333 33446666543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=289.92 Aligned_cols=251 Identities=37% Similarity=0.614 Sum_probs=205.4
Q ss_pred CCccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCC
Q 008873 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGG 80 (550)
Q Consensus 1 ~~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~ 80 (550)
|++..++||||||++|||.+.|+++++.+.++.+.......+....++||++|++|+.++|+++|+++++..++....
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~-- 177 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN-- 177 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H--
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc--
Confidence 578899999999999999999999999999999976532136788999999999999999999999999887665420
Q ss_pred CCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEE
Q 008873 81 TDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIW 159 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (550)
.+...+.++..+.|++|++ +++.+++|.++...|+.||+.+|+++.+..+..++|++....+.+. ..++++|++
T Consensus 178 -~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~----~~~~~~~l~ 252 (353)
T PF00930_consen 178 -SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFL----GPDGNEFLW 252 (353)
T ss_dssp -HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-----TTTSSEEEE
T ss_pred -ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccc----cCCCCEEEE
Confidence 0124578999999999999 8888999999999999999999999999988888998654433332 014556999
Q ss_pred EEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC-CCCCCCCCeeeCCC
Q 008873 160 ASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD-WNHTLEAPVKLTNG 238 (550)
Q Consensus 160 ~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~-g~~~~~~~~~lt~~ 238 (550)
.++++|+.|||+++.+++..++||.|+|+|..+..|+++++.|||+++.+++.+++||++++ + ++ .+++||+.
T Consensus 253 ~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~--~~~~----~~~~LT~~ 326 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL--DSGG----EPKCLTCE 326 (353)
T ss_dssp EEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET--TETT----EEEESSTT
T ss_pred EEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe--CCCC----CeEeccCC
Confidence 99999999999999999999999999999988888999999999999998888999999999 5 44 78999998
Q ss_pred CceE-EEEECCCCCEEEEeecCCCCCC
Q 008873 239 KGKH-VAVLDHNMRNFVDFHDSLDSPP 264 (550)
Q Consensus 239 ~~~~-~~~~s~dg~~l~~~~s~~~~p~ 264 (550)
.+.+ ++.|||||++++..+++++.||
T Consensus 327 ~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 327 DGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp SSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred CCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 8777 8899999999999999999885
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=265.21 Aligned_cols=199 Identities=36% Similarity=0.542 Sum_probs=178.0
Q ss_pred hhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 352 DMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 352 ~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
+...++|+++||+|+.+|+||++++|.+|......+++..+++|++++++++.+++.+|++||+|+|+|+||+++++++.
T Consensus 4 ~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 4 NWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred eHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhc
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeeEEEEEcCCcCCcccccch---hhh-hcc--CCCCCCccccccCChhhhhhc--CCCcEEEEecCCCCCCChHHH
Q 008873 432 RFPDVFQCAVSGAPVTSWDGYDTF---YTE-KYM--GLPSEDPVGYEYSSVMHHVHK--MKGKLLLVHGMIDENVHFRHT 503 (550)
Q Consensus 432 ~~~~~~~~~v~~~~~~~~~~~~~~---~~~-~~~--g~~~~~~~~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~~~~ 503 (550)
++|++|+|+++.+|+.|+..+... +.. ++. +.++.+.+.|...++...+.+ +++|+||+||++|.+||+.++
T Consensus 84 ~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s 163 (213)
T PF00326_consen 84 QHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPSQS 163 (213)
T ss_dssp HTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTHHH
T ss_pred ccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHHHH
Confidence 999999999999999998765433 333 222 566667888988999999999 889999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 504 ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 504 ~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.+++++|++.|+++++++||+++|.+...++...+.+++++||+++|
T Consensus 164 ~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l 210 (213)
T PF00326_consen 164 LRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYL 210 (213)
T ss_dssp HHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999888888899999999999986
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-29 Score=247.27 Aligned_cols=460 Identities=17% Similarity=0.132 Sum_probs=319.6
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++..|||++.+||.. |....++ -.|.+.||++|+...-.+
T Consensus 131 Lg~~~~s~D~~~la~s~-D~~G~e~------------------------------y~lr~kdL~tg~~~~d~i------- 172 (682)
T COG1770 131 LGAASISPDHNLLAYSV-DVLGDEQ------------------------------YTLRFKDLATGEELPDEI------- 172 (682)
T ss_pred eeeeeeCCCCceEEEEE-ecccccE------------------------------EEEEEEecccccccchhh-------
Confidence 46788999999999974 4333333 356889999997653322
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCC-CceEEEEEECCC--CceEEEEEeecCceeeccCccccCCCCCccCCCcEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKT--GQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWA 160 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~~--g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (550)
..-...++|.+|++.+++...+.. ....||...+.+ .+.+.|.++.++.|.- .+. ..+.+.++++
T Consensus 173 ---~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~------~v~---~s~s~~yi~i 240 (682)
T COG1770 173 ---TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFL------SVG---RSRSEAYIVI 240 (682)
T ss_pred ---cccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEE------Eee---eccCCceEEE
Confidence 112455799999998777765554 456899988888 6778888887776531 111 1133447766
Q ss_pred EccC-CccEEEEEeCCC--ceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC-----------
Q 008873 161 SEKT-GFRHLYLHDING--TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN----------- 226 (550)
Q Consensus 161 s~~~-g~~~l~~~~~~~--~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~----------- 226 (550)
+-.+ .-.++++++.+. .+++.+..-.-.+ .......|+.+|+.+|.++ .++.|++.+.. ...
T Consensus 241 ~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~--eY~~eh~~d~f~i~sN~~g-knf~l~~ap~~-~~~~~w~~~I~h~~ 316 (682)
T COG1770 241 SLGSHITSEVRLLDADDPEAEPKVVLPRENGV--EYSVEHGGDRFYILSNADG-KNFKLVRAPVS-ADKSNWRELIPHRE 316 (682)
T ss_pred EcCCCcceeEEEEecCCCCCceEEEEEcCCCc--EEeeeecCcEEEEEecCCC-cceEEEEccCC-CChhcCeeeeccCC
Confidence 5432 246788887654 3334333211111 1124556788999988877 56788877651 111
Q ss_pred --------------------CCCCCCeeeCCCC-ceEEEE-----------EC--CCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 227 --------------------HTLEAPVKLTNGK-GKHVAV-----------LD--HNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 227 --------------------~~~~~~~~lt~~~-~~~~~~-----------~s--~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.....++...... +.+.++ .+ ++...|.+.+++.++|.+++-+|+.
T Consensus 317 ~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~ 396 (682)
T COG1770 317 DVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMA 396 (682)
T ss_pred CceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeecc
Confidence 0001111111111 111111 11 3556789999999999999999999
Q ss_pred CCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccch
Q 008873 273 DGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD 352 (550)
Q Consensus 273 ~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~ 352 (550)
+++. +.|...+ ....++... -..+.+..+..||.+|+..+..-++.+ ..++.|++++.+|.-+... .. .|.
T Consensus 397 t~er-~~Lkqqe-V~~g~dp~~-Y~s~riwa~a~dgv~VPVSLvyrkd~~-~~g~~p~lLygYGaYG~s~-~p----~Fs 467 (682)
T COG1770 397 TGER-TLLKQQE-VPGGFDPED-YVSRRIWATADDGVQVPVSLVYRKDTK-LDGSAPLLLYGYGAYGISM-DP----SFS 467 (682)
T ss_pred CCcE-EEEEecc-CCCCCChhH-eEEEEEEEEcCCCcEeeEEEEEecccC-CCCCCcEEEEEeccccccC-Cc----Ccc
Confidence 9983 4444332 212233222 256888899899999999988776532 2367899999999765543 22 333
Q ss_pred hHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 353 ~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
...-.|..+|++......||.|.-|..|.+............|+++++++|.++++.++++|+++|.|+||+++..++.+
T Consensus 468 ~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~ 547 (682)
T COG1770 468 IARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANM 547 (682)
T ss_pred cceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhh
Confidence 33456789999999999999999999999988777778889999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEcCCcCCcccc---------cchhhhhccCCCCCCccc---cccCChhhhhhcCC-CcEEEEecCCCCCCC
Q 008873 433 FPDVFQCAVSGAPVTSWDGY---------DTFYTEKYMGLPSEDPVG---YEYSSVMHHVHKMK-GKLLLVHGMIDENVH 499 (550)
Q Consensus 433 ~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~i~-~P~lii~G~~D~~v~ 499 (550)
.|++|+++|+..|+.|.... ...|.|+ |.|. +++. +...||..++..-. +|+|++.|..|.+|.
T Consensus 548 ~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EW--GNP~-d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~ 624 (682)
T COG1770 548 APDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEW--GNPL-DPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ 624 (682)
T ss_pred ChhhhhheeecCCccchhhhhcCCCCCCCccchhhh--CCcC-CHHHHHHHhhcCchhccccCCCCceEEEccccCCccc
Confidence 99999999999999885321 1123332 6666 4443 45678888777744 689999999999999
Q ss_pred hHHHHHHHHHHHHcCC---CeEEEEcCCCCCcC
Q 008873 500 FRHTARLINALVAARK---PYEILIFPDERHMP 529 (550)
Q Consensus 500 ~~~~~~~~~~l~~~~~---~~~~~~~p~~~H~~ 529 (550)
..+..+..++|++.+. ++-+.+--++||+-
T Consensus 625 YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 625 YWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred cchHHHHHHHHhhcccCCCcEEEEecccccCCC
Confidence 9999999999988764 45555557899974
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=221.45 Aligned_cols=293 Identities=17% Similarity=0.197 Sum_probs=220.3
Q ss_pred CCCEEEEeecCCCCCCEEEEEEcCCCce-eEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCC
Q 008873 249 NMRNFVDFHDSLDSPPRILLCSLQDGSL-VLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPP 327 (550)
Q Consensus 249 dg~~l~~~~s~~~~p~~l~~~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~ 327 (550)
+.+.+-|..+++-+|+.+|.+|+.++.. ...+.+.....+.+..- .-.++++.+++.||..|+..++.-... ...++
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s-~y~~~r~~~~SkDGt~VPM~Iv~kk~~-k~dg~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDAS-DYVVERIEVSSKDGTKVPMFIVYKKDI-KLDGS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCccccc-ceEEEEEEEecCCCCccceEEEEechh-hhcCC
Confidence 4567889999999999999999988832 11222221222333322 336799999999999999998884332 23357
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|++++.||+.+.. +...|+.. ...|..+|++....|.||.|++|.+|+........+..++|++++++||.+++
T Consensus 470 ~P~LLygYGay~is-l~p~f~~s----rl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~g 544 (712)
T KOG2237|consen 470 KPLLLYGYGAYGIS-LDPSFRAS----RLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENG 544 (712)
T ss_pred CceEEEEeccccee-eccccccc----eeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcC
Confidence 89999999986654 44555432 33455699999999999999999999998877777888999999999999999
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-----chhhhhc--cCCCCCCccccccCChhhhh
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-----TFYTEKY--MGLPSEDPVGYEYSSVMHHV 480 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~--~g~~~~~~~~~~~~~~~~~~ 480 (550)
++.++++++.|.|.||.++..++-++|++|+|+++..|+.|+..+. ..+.+.+ .|.|. +.+.+...+++..+
T Consensus 545 yt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~-~~~~~~~i~~y~pv 623 (712)
T KOG2237|consen 545 YTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPE-DFEDLIKISPYSPV 623 (712)
T ss_pred CCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChh-hhhhhheecccCcc
Confidence 9999999999999999999999999999999999999999875431 1222322 24444 33445555666666
Q ss_pred hcCC-----CcEEEEecCCCCCCChHHHHHHHHHHHHcC-------CCeEEEEcCCCCCcCCCC-CcHHHHHHHHHHHHH
Q 008873 481 HKMK-----GKLLLVHGMIDENVHFRHTARLINALVAAR-------KPYEILIFPDERHMPRRH-RDRIYMEERIWEFIE 547 (550)
Q Consensus 481 ~~i~-----~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-------~~~~~~~~p~~~H~~~~~-~~~~~~~~~~~~fl~ 547 (550)
++++ .-+|+..+.+|++|++.++.++.++|+..- .++-+.+.+++||+...+ ..+.+-.....+||.
T Consensus 624 ~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~ 703 (712)
T KOG2237|consen 624 DNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLA 703 (712)
T ss_pred CCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHH
Confidence 6665 357899999999999999999999997742 468888999999987432 333444555667776
Q ss_pred Hh
Q 008873 548 RT 549 (550)
Q Consensus 548 ~~ 549 (550)
+.
T Consensus 704 K~ 705 (712)
T KOG2237|consen 704 KM 705 (712)
T ss_pred HH
Confidence 54
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=231.78 Aligned_cols=292 Identities=20% Similarity=0.225 Sum_probs=237.6
Q ss_pred EECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCC
Q 008873 245 VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYG 324 (550)
Q Consensus 245 ~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~ 324 (550)
.-+-+|+.+.+..++...|+.+++.+..+++ ++.+... ...++.- -..++++..++.||++|++++.. ++.+.
T Consensus 346 ~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e-Le~ik~~---p~~FDa~-~~~veQ~~atSkDGT~IPYFiv~-K~~~~- 418 (648)
T COG1505 346 SADKDGDEVFLAFTSFTTPSTLYRLDLFGGE-LEVIREQ---PVQFDAD-NYEVEQFFATSKDGTRIPYFIVR-KGAKK- 418 (648)
T ss_pred cCCCCCcEEEEEeecccCCCceEEEecCCce-ehhhhhc---cCCcCcc-CceEEEEEEEcCCCccccEEEEe-cCCcC-
Confidence 3345788899999999999999999985443 5555442 2233322 34678999999999999999998 55432
Q ss_pred CCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 325 PPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 325 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
.+.|++|+-|||.+... . +.+......+.++|.+.|..|.||.|.+|.+|+++......+..++|++++++.|+
T Consensus 419 -d~~pTll~aYGGF~vsl-t----P~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi 492 (648)
T COG1505 419 -DENPTLLYAYGGFNISL-T----PRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLI 492 (648)
T ss_pred -CCCceEEEecccccccc-C----CccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 26799999999866543 2 34444457788999999999999999999999999988888899999999999999
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-----hhhhhccCCCCC--CccccccCChh
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-----FYTEKYMGLPSE--DPVGYEYSSVM 477 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~g~~~~--~~~~~~~~~~~ 477 (550)
++++..+++++|.|.|-||.++..+++++|++|.|+++..|+.|+..|.. .|...| |.|.. +.....++||+
T Consensus 493 ~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EY-G~Pd~P~d~~~l~~YSPy 571 (648)
T COG1505 493 KRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEY-GNPDDPEDRAFLLAYSPY 571 (648)
T ss_pred HhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhc-CCCCCHHHHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999987653 244444 55543 23456788998
Q ss_pred hhhhcCC--CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH-HHHHHHHHHHHHHhC
Q 008873 478 HHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR-IYMEERIWEFIERTL 550 (550)
Q Consensus 478 ~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~-~~~~~~~~~fl~~~l 550 (550)
++++.-+ .|+||..+..|++|+|.++++|+.+|++.+.++-+.+-.++||+-..+... ......++.||.+.|
T Consensus 572 ~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 572 HNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred hcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 8887743 699999999999999999999999999999999999999999987554443 445566788888775
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=197.46 Aligned_cols=214 Identities=13% Similarity=0.088 Sum_probs=154.6
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~ 376 (550)
+....+.+.+|..|.||+..|.+.. .++.|+||++||-..... .+..++++|+++||+|+.+|.||+ |.|
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~~--~~~~~~vIi~HGf~~~~~-------~~~~~A~~La~~G~~vLrfD~rg~~GeS 79 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKENS--PKKNNTILIASGFARRMD-------HFAGLAEYLSSNGFHVIRYDSLHHVGLS 79 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCcccC--CCCCCEEEEeCCCCCChH-------HHHHHHHHHHHCCCEEEEecCCCCCCCC
Confidence 3445677889999999999997431 256789999999554321 245568999999999999999887 777
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 456 (550)
+.++....... ...|+.++++|+.++ +.++|+|+||||||.++..+|.. + .++++|+.+|+.++..+....
T Consensus 80 ~G~~~~~t~s~----g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~ 150 (307)
T PRK13604 80 SGTIDEFTMSI----GKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERA 150 (307)
T ss_pred CCccccCcccc----cHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHh
Confidence 76664332211 278999999999876 34689999999999998777664 3 389999999998854211100
Q ss_pred hhh---------------ccCCCCCCc---------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHH
Q 008873 457 TEK---------------YMGLPSEDP---------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 512 (550)
Q Consensus 457 ~~~---------------~~g~~~~~~---------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 512 (550)
... +.|...... ......++...+++++.|+|+|||+.|+.||++.+.++++++..
T Consensus 151 ~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s 230 (307)
T PRK13604 151 LGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS 230 (307)
T ss_pred hhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc
Confidence 000 000000000 01123455677888999999999999999999999999998632
Q ss_pred cCCCeEEEEcCCCCCcCCC
Q 008873 513 ARKPYEILIFPDERHMPRR 531 (550)
Q Consensus 513 ~~~~~~~~~~p~~~H~~~~ 531 (550)
.+.++.++|++.|.+..
T Consensus 231 --~~kkl~~i~Ga~H~l~~ 247 (307)
T PRK13604 231 --EQCKLYSLIGSSHDLGE 247 (307)
T ss_pred --CCcEEEEeCCCccccCc
Confidence 57899999999999843
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=197.12 Aligned_cols=225 Identities=19% Similarity=0.115 Sum_probs=149.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh-hHHHHhh--c
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK-FEASIKH--N 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~-~~~~~~~--~ 387 (550)
+....+.|.+. .+++.|+||++||.++... .+..+++.|+++||.|+++|+||+|.+... ....... .
T Consensus 12 ~~~~~~~p~~~--~~~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~ 82 (249)
T PRK10566 12 IEVLHAFPAGQ--RDTPLPTVFFYHGFTSSKL-------VYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQ 82 (249)
T ss_pred cceEEEcCCCC--CCCCCCEEEEeCCCCcccc-------hHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHH
Confidence 44566777642 1246799999999766542 234468889999999999999998753111 0000000 0
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-chhhhhccCCCCC
Q 008873 388 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-TFYTEKYMGLPSE 466 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~g~~~~ 466 (550)
......+|+.++++++.+++.+|.++|+++|||+||++++.++.++|+..++++. .+........ ..+.......+..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (249)
T PRK10566 83 ILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASL-MGSGYFTSLARTLFPPLIPETAAQ 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEe-eCcHHHHHHHHHhccccccccccc
Confidence 0012357788889999888888999999999999999999999988875444332 2211110000 0000000000000
Q ss_pred Cc------cccccCChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHcCC--CeEEEEcCCCCCcCCCCCcHHH
Q 008873 467 DP------VGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMPRRHRDRIY 537 (550)
Q Consensus 467 ~~------~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~p~~~H~~~~~~~~~~ 537 (550)
.. ..+...++...+.++ ++|+|++||++|..+|+.++.+++++++.++. +++++.+++++|.+. ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~-----~~ 236 (249)
T PRK10566 162 QAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT-----PE 236 (249)
T ss_pred HHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC-----HH
Confidence 00 011223344456666 68999999999999999999999999998886 478999999999974 24
Q ss_pred HHHHHHHHHHHhC
Q 008873 538 MEERIWEFIERTL 550 (550)
Q Consensus 538 ~~~~~~~fl~~~l 550 (550)
..+.+++||+++|
T Consensus 237 ~~~~~~~fl~~~~ 249 (249)
T PRK10566 237 ALDAGVAFFRQHL 249 (249)
T ss_pred HHHHHHHHHHhhC
Confidence 6789999999986
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=196.41 Aligned_cols=242 Identities=19% Similarity=0.208 Sum_probs=165.0
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
..+.+...|+..||.+|++..+.|.+.. .+.|+||++||.+... .| .+...+..|+++||.|+++|+||+|
T Consensus 29 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~---~~~~~VvllHG~~~~~----~~--~~~~~~~~L~~~Gy~V~~~D~rGhG 99 (330)
T PLN02298 29 GIKGSKSFFTSPRGLSLFTRSWLPSSSS---PPRALIFMVHGYGNDI----SW--TFQSTAIFLAQMGFACFALDLEGHG 99 (330)
T ss_pred CCccccceEEcCCCCEEEEEEEecCCCC---CCceEEEEEcCCCCCc----ce--ehhHHHHHHHhCCCEEEEecCCCCC
Confidence 3456777888889999999998886421 3468999999975432 12 2233467788999999999999999
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD- 453 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~- 453 (550)
.+...... ... -....+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|........
T Consensus 100 ~S~~~~~~--~~~-~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 176 (330)
T PLN02298 100 RSEGLRAY--VPN-VDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIR 176 (330)
T ss_pred CCCCcccc--CCC-HHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccC
Confidence 87531110 000 01126789999999987644455689999999999999999999999999999998865432100
Q ss_pred -ch-------hhhhccC----CCCC------------------CccccccCC--------------hhhhhhcCCCcEEE
Q 008873 454 -TF-------YTEKYMG----LPSE------------------DPVGYEYSS--------------VMHHVHKMKGKLLL 489 (550)
Q Consensus 454 -~~-------~~~~~~g----~~~~------------------~~~~~~~~~--------------~~~~~~~i~~P~li 489 (550)
.. +..++.. .+.. ++..|.... ....+.++++|+||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLi 256 (330)
T PLN02298 177 PPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIV 256 (330)
T ss_pred CchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEE
Confidence 00 0011100 0000 000111000 12235678899999
Q ss_pred EecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC--C-CcHHHHHHHHHHHHHHhC
Q 008873 490 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR--H-RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 490 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~--~-~~~~~~~~~~~~fl~~~l 550 (550)
+||+.|..+|++.+.++++++.. ...+++++++++|.+.. + .....+.+.+.+||++++
T Consensus 257 i~G~~D~ivp~~~~~~l~~~i~~--~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 257 LHGSADVVTDPDVSRALYEEAKS--EDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred EecCCCCCCCHHHHHHHHHHhcc--CCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999887742 35689999999999743 2 234668889999998764
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=200.14 Aligned_cols=229 Identities=14% Similarity=0.094 Sum_probs=159.5
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+.|+..+|..|+++++.|... ++.|+||++||....+. + .+...++.|+++||+|+++|+||+|.+
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~~----~~~P~Vli~gG~~~~~~--~----~~~~~~~~La~~Gy~vl~~D~pG~G~s 236 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKGD----GPFPTVLVCGGLDSLQT--D----YYRLFRDYLAPRGIAMLTIDMPSVGFS 236 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCCC----CCccEEEEeCCcccchh--h----hHHHHHHHHHhCCCEEEEECCCCCCCC
Confidence 5789999998888999999999742 57799886655332211 1 233457789999999999999999876
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-c---
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y--- 452 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-~--- 452 (550)
..... .........++++++...+.+|.+||+++|+|+||++++.++..+|++++++|+.+|+.+... .
T Consensus 237 ~~~~~-------~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~ 309 (414)
T PRK05077 237 SKWKL-------TQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKR 309 (414)
T ss_pred CCCCc-------cccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhh
Confidence 43100 001112235788999999899999999999999999999999988999999999988764210 0
Q ss_pred ----cchhh---hhccCCCCCCccccc----cCCh--hh-hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 453 ----DTFYT---EKYMGLPSEDPVGYE----YSSV--MH-HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 453 ----~~~~~---~~~~g~~~~~~~~~~----~~~~--~~-~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
...+. ...++.+..+.+.+. ..+. .. ...++++|+|++||++|.++|++++..+.+. ..+.+
T Consensus 310 ~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~----~~~~~ 385 (414)
T PRK05077 310 QQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASS----SADGK 385 (414)
T ss_pred hhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHh----CCCCe
Confidence 00010 011233322221111 1111 01 1256889999999999999999999866543 34678
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++++|++ |.+ +........+.+||+++|
T Consensus 386 l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 386 LLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred EEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 8999986 433 467888999999999876
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=191.15 Aligned_cols=245 Identities=14% Similarity=0.140 Sum_probs=161.8
Q ss_pred CCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 296 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 296 ~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
...+.+++.+. -|..+.+.+|.|+.. ..+++|+|+++||.++... .|.. .....+.++..|++|++||..++|
T Consensus 16 ~~~~~~~~~s~~l~~~~~~~vy~P~~~--~~~~~Pvv~~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~Vv~pd~~~~g 89 (283)
T PLN02442 16 GFNRRYKHFSSTLGCSMTFSVYFPPAS--DSGKVPVLYWLSGLTCTDE---NFIQ-KSGAQRAAAARGIALVAPDTSPRG 89 (283)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCcc--cCCCCCEEEEecCCCcChH---HHHH-hhhHHHHHhhcCeEEEecCCCCCC
Confidence 44566677663 567899999999842 2368999999999766532 2321 111346667889999999976544
Q ss_pred C--C----------chh-hHHHHhhccCCCchHH-HH-HHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeE
Q 008873 375 R--R----------GLK-FEASIKHNCGRIDAED-QL-TGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQ 438 (550)
Q Consensus 375 ~--~----------~~~-~~~~~~~~~~~~~~~D-~~-~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~ 438 (550)
. . +.. +.......++.....+ +. +..+++.+. ..+|.++++|+|+||||++++.++.++|++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~ 169 (283)
T PLN02442 90 LNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYK 169 (283)
T ss_pred CCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEE
Confidence 1 1 111 1111111111111111 22 222233332 33688999999999999999999999999999
Q ss_pred EEEEcCCcCCcccc--cchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChH-HHHHHHHHHHHcCC
Q 008873 439 CAVSGAPVTSWDGY--DTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAARK 515 (550)
Q Consensus 439 ~~v~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~ 515 (550)
++++.+|+.++... .......+++.+....+.+...+++..+.+.++|+|++||+.|+.++.. ++..+++++++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~ 249 (283)
T PLN02442 170 SVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAGA 249 (283)
T ss_pred EEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcCC
Confidence 99999998875422 1112234455544444445555555666667899999999999999974 68899999999999
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++.++|+++|.+. ....+.+..+.|..++
T Consensus 250 ~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~ 280 (283)
T PLN02442 250 PVTLRLQPGYDHSYF---FIATFIDDHINHHAQA 280 (283)
T ss_pred CeEEEEeCCCCccHH---HHHHHHHHHHHHHHHH
Confidence 999999999999874 3344445555555544
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=183.10 Aligned_cols=242 Identities=14% Similarity=0.132 Sum_probs=162.4
Q ss_pred CCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC--CCC
Q 008873 297 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--RGT 373 (550)
Q Consensus 297 ~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~--rG~ 373 (550)
+.+.+.+.+. .+..+.+.+|.|++.. .+++|+|+++||.+.... .|... .....++++.|+.||+||. ||+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~--~~~~P~vvllHG~~~~~~---~~~~~-~~~~~la~~~g~~Vv~Pd~~~~g~ 85 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAA--AGPVPVLWYLSGLTCTHE---NFMIK-AGAQRFAAEHGLALVAPDTSPRGT 85 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCcc--CCCCCEEEEccCCCCCcc---HHHhh-hHHHHHHhhcCcEEEEeCCCCCcC
Confidence 3355555554 4577889999998642 256899999999876532 23111 1123444567999999997 665
Q ss_pred CCCchh--hH---------HHHhhccC-C-CchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEE
Q 008873 374 ARRGLK--FE---------ASIKHNCG-R-IDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 439 (550)
Q Consensus 374 g~~~~~--~~---------~~~~~~~~-~-~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~ 439 (550)
+.++.. |. ......+. . .....+.+.+..++++ ..+|.++++|+|+||||++++.++.++|++|++
T Consensus 86 ~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~ 165 (275)
T TIGR02821 86 GIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKS 165 (275)
T ss_pred CCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceE
Confidence 533311 10 00000000 0 1122333444444443 457889999999999999999999999999999
Q ss_pred EEEcCCcCCccccc--chhhhhccCCCCCCccccccCChhhhhhc--CCCcEEEEecCCCCCCCh-HHHHHHHHHHHHcC
Q 008873 440 AVSGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHK--MKGKLLLVHGMIDENVHF-RHTARLINALVAAR 514 (550)
Q Consensus 440 ~v~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~-~~~~~~~~~l~~~~ 514 (550)
+++.+|+.+..... ......+++.+.. .+...++...+.+ ...|+++.||+.|..++. .++..+.++|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g 242 (275)
T TIGR02821 166 VSAFAPIVAPSRCPWGQKAFSAYLGADEA---AWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAG 242 (275)
T ss_pred EEEECCccCcccCcchHHHHHHHhccccc---chhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcC
Confidence 99999987754321 1122344444322 2334455554443 457999999999999999 68899999999999
Q ss_pred CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 515 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+++++.++|+++|++.. ....+...++|+.+++
T Consensus 243 ~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 243 QALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred CCeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 99999999999999844 4556788889988765
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=185.86 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=155.8
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
...||..+.+.+|.|.. .+.|+|+++||.+.+.. .|...++.|+++||.|+++|+||+|.+......
T Consensus 6 ~~~~g~~l~~~~~~~~~-----~~~~~v~llHG~~~~~~-------~~~~~~~~l~~~g~~via~D~~G~G~S~~~~~~- 72 (276)
T PHA02857 6 FNLDNDYIYCKYWKPIT-----YPKALVFISHGAGEHSG-------RYEELAENISSLGILVFSHDHIGHGRSNGEKMM- 72 (276)
T ss_pred ecCCCCEEEEEeccCCC-----CCCEEEEEeCCCccccc-------hHHHHHHHHHhCCCEEEEccCCCCCCCCCccCC-
Confidence 34599999999998853 34589999999765533 445568889999999999999999977532110
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc--c----hhh
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD--T----FYT 457 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~----~~~ 457 (550)
...+ ...++|+...++++.+.. ...+++++|||+||.+++.++.++|++++++|+.+|........ . ...
T Consensus 73 -~~~~-~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~ 148 (276)
T PHA02857 73 -IDDF-GVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLM 148 (276)
T ss_pred -cCCH-HHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHH
Confidence 0011 012567777777765542 34679999999999999999999999999999999875432100 0 000
Q ss_pred hhcc------------------------CCCCCCc----ccc-c-----cCChhhhhhcCCCcEEEEecCCCCCCChHHH
Q 008873 458 EKYM------------------------GLPSEDP----VGY-E-----YSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 503 (550)
Q Consensus 458 ~~~~------------------------g~~~~~~----~~~-~-----~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 503 (550)
..+. ..+.... ..+ . .......+.++++|+|+++|++|..+|+..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~ 228 (276)
T PHA02857 149 GIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGA 228 (276)
T ss_pred HHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHH
Confidence 0000 0000000 000 0 0001224567889999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCcCCCC--CcHHHHHHHHHHHHHHh
Q 008873 504 ARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERT 549 (550)
Q Consensus 504 ~~~~~~l~~~~~~~~~~~~p~~~H~~~~~--~~~~~~~~~~~~fl~~~ 549 (550)
.++.+.+. .++++.++++++|.+... +.++++++.+++||+++
T Consensus 229 ~~l~~~~~---~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 229 YYFMQHAN---CNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HHHHHHcc---CCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 99988762 257899999999998644 44788999999999875
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-21 Score=188.67 Aligned_cols=209 Identities=8% Similarity=0.067 Sum_probs=155.5
Q ss_pred eEEEcCCCCe-EEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 6 GYWWSLDSKF-IAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 6 ~~~wSPdg~~-lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
...|||||++ ++|++..... .+||++|+++|+.++++.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~---------------------------------~~Iyv~dl~tg~~~~lt~-------- 230 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERK---------------------------------PTLYKYNLYTGKKEKIAS-------- 230 (419)
T ss_pred eEEECCCCCcEEEEEEccCCC---------------------------------CEEEEEECCCCcEEEEec--------
Confidence 5779999997 6666554221 368999999999998853
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......+.|||||+.+++...+. ...+||++++++|+.++||.... .+..+ .|++|+ ++|.++
T Consensus 231 -~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~dl~~g~~~~LT~~~~---~d~~p---------~~SPDG~~I~F~Sd 296 (419)
T PRK04043 231 -SQGMLVVSDVSKDGSKLLLTMAPK-GQPDIYLYDTNTKTLTQITNYPG---IDVNG---------NFVEDDKRIVFVSD 296 (419)
T ss_pred -CCCcEEeeEECCCCCEEEEEEccC-CCcEEEEEECCCCcEEEcccCCC---ccCcc---------EECCCCCEEEEEEC
Confidence 244556789999999888887664 45789999999999999986432 11111 345544 999999
Q ss_pred cCCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCCCC----ceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 163 KTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGP----LESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~----~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
+.|..+||++++++++.++||.. .+. . .|||||+.|+|++...+. ...+||.+++ +++ ..++||.
T Consensus 297 r~g~~~Iy~~dl~~g~~~rlt~~g~~~---~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~--~~g----~~~~LT~ 366 (419)
T PRK04043 297 RLGYPNIFMKKLNSGSVEQVVFHGKNN---S-SVSTYKNYIVYSSRETNNEFGKNTFNLYLIST--NSD----YIRRLTA 366 (419)
T ss_pred CCCCceEEEEECCCCCeEeCccCCCcC---c-eECCCCCEEEEEEcCCCcccCCCCcEEEEEEC--CCC----CeEECCC
Confidence 99999999999999999888863 332 2 599999999999875421 2368999998 444 5788887
Q ss_pred CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 238 ~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
......++|||||+.++|+... ..-..|+++++ +|...+++.
T Consensus 367 ~~~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l-~g~~~~~l~ 408 (419)
T PRK04043 367 NGVNQFPRFSSDGGSIMFIKYL-GNQSALGIIRL-NYNKSFLFP 408 (419)
T ss_pred CCCcCCeEECCCCCEEEEEEcc-CCcEEEEEEec-CCCeeEEee
Confidence 6444557999999999998665 44457999998 555444453
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=190.28 Aligned_cols=236 Identities=14% Similarity=0.112 Sum_probs=157.8
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
++..+...+|.++.+..+.|.+. ++.|+||++||.+.... . .|...+..|+++||.|+++|+||+|.+..
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~~----~~~~~iv~lHG~~~~~~---~---~~~~~~~~l~~~g~~v~~~D~~G~G~S~~ 131 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPENS----RPKAAVCFCHGYGDTCT---F---FFEGIARKIASSGYGVFAMDYPGFGLSEG 131 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCCC----CCCeEEEEECCCCCccc---h---HHHHHHHHHHhCCCEEEEecCCCCCCCCC
Confidence 34455567899999999988642 34589999999655421 1 12345678888999999999999997753
Q ss_pred hhHH-HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc--cc-
Q 008873 379 KFEA-SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--DT- 454 (550)
Q Consensus 379 ~~~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~--~~- 454 (550)
.... ....+ ..+|+.+.++.+..+...+..+++|+||||||.+++.++.++|++++++|+.+|....... ..
T Consensus 132 ~~~~~~~~~~----~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~ 207 (349)
T PLN02385 132 LHGYIPSFDD----LVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPP 207 (349)
T ss_pred CCCCcCCHHH----HHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCch
Confidence 2100 00111 1567777777776554445568999999999999999999999999999999886432100 00
Q ss_pred h-----------------h-----hhhccCCCC------CCcccccc--------------CChhhhhhcCCCcEEEEec
Q 008873 455 F-----------------Y-----TEKYMGLPS------EDPVGYEY--------------SSVMHHVHKMKGKLLLVHG 492 (550)
Q Consensus 455 ~-----------------~-----~~~~~g~~~------~~~~~~~~--------------~~~~~~~~~i~~P~lii~G 492 (550)
. + ...+...+. .+...+.. ......+.++++|+|++||
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G 287 (349)
T PLN02385 208 LVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHG 287 (349)
T ss_pred HHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEe
Confidence 0 0 000000000 00000000 0112235678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC--Cc-HHHHHHHHHHHHHHhC
Q 008873 493 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH--RD-RIYMEERIWEFIERTL 550 (550)
Q Consensus 493 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~--~~-~~~~~~~~~~fl~~~l 550 (550)
++|..+|+..+..+++++.. .+.++.++|+++|.+... +. ...+++.+++||++++
T Consensus 288 ~~D~vv~~~~~~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 288 EADKVTDPSVSKFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred CCCCccChHHHHHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 99999999999999887632 356889999999997432 22 4458899999999874
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=174.57 Aligned_cols=239 Identities=15% Similarity=0.172 Sum_probs=171.0
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
....-.++..+|..+....+.|.... ++..+|+++||...... ..+...+..|++.||.|+++|++|+|.+
T Consensus 26 ~~~~~~~~n~rG~~lft~~W~p~~~~---~pr~lv~~~HG~g~~~s------~~~~~~a~~l~~~g~~v~a~D~~GhG~S 96 (313)
T KOG1455|consen 26 TYSESFFTNPRGAKLFTQSWLPLSGT---EPRGLVFLCHGYGEHSS------WRYQSTAKRLAKSGFAVYAIDYEGHGRS 96 (313)
T ss_pred ceeeeeEEcCCCCEeEEEecccCCCC---CCceEEEEEcCCcccch------hhHHHHHHHHHhCCCeEEEeeccCCCcC
Confidence 34555677889999999999996632 56679999999655421 1445568899999999999999999987
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc---
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD--- 453 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--- 453 (550)
.... ....++ ..-++|+...++.+..+..-..-..+++|+||||.+++.++.++|+.+.++|..+|..-...-.
T Consensus 97 dGl~--~yi~~~-d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~ 173 (313)
T KOG1455|consen 97 DGLH--AYVPSF-DLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPH 173 (313)
T ss_pred CCCc--ccCCcH-HHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCC
Confidence 5321 111111 1236788888888777754445678999999999999999999999999999999975432100
Q ss_pred ----------chhhhhccCCC------------------CCCcccccc--------------CChhhhhhcCCCcEEEEe
Q 008873 454 ----------TFYTEKYMGLP------------------SEDPVGYEY--------------SSVMHHVHKMKGKLLLVH 491 (550)
Q Consensus 454 ----------~~~~~~~~g~~------------------~~~~~~~~~--------------~~~~~~~~~i~~P~lii~ 491 (550)
.....++.-.| ..|+..|.. ......+.++..|+||+|
T Consensus 174 p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilH 253 (313)
T KOG1455|consen 174 PPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILH 253 (313)
T ss_pred cHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEe
Confidence 00000110001 011111111 112335677889999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC---CCCcHHHHHHHHHHHHHHh
Q 008873 492 GMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR---RHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 492 G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~---~~~~~~~~~~~~~~fl~~~ 549 (550)
|+.|.++.+..+.++++.... .+.++.+|||.-|.+. ..++...++..|++||+++
T Consensus 254 G~dD~VTDp~~Sk~Lye~A~S--~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 254 GTDDKVTDPKVSKELYEKASS--SDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cCCCcccCcHHHHHHHHhccC--CCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 999999999999999997643 4678999999999975 5788899999999999876
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=187.50 Aligned_cols=240 Identities=18% Similarity=0.159 Sum_probs=159.8
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
+...+...+...+|..+++..+.|.. +.|+||++||...+.. .|...+..++++||.|+++|+||+|
T Consensus 27 ~~~~~~~~~~~~~g~~l~~~~~~~~~------~~~~vll~HG~~~~~~-------~y~~~~~~l~~~g~~v~~~D~~G~G 93 (330)
T PRK10749 27 WRQREEAEFTGVDDIPIRFVRFRAPH------HDRVVVICPGRIESYV-------KYAELAYDLFHLGYDVLIIDHRGQG 93 (330)
T ss_pred HhhccceEEEcCCCCEEEEEEccCCC------CCcEEEEECCccchHH-------HHHHHHHHHHHCCCeEEEEcCCCCC
Confidence 35567778888899999999887642 2368899999654321 2344566788999999999999999
Q ss_pred CCchhhHHHHhhccC--CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 375 RRGLKFEASIKHNCG--RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
.+............. ..-.+|+.++++.+.+. .+..++.++||||||.+++.++.++|+.++++|+.+|.......
T Consensus 94 ~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~ 171 (330)
T PRK10749 94 RSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLP 171 (330)
T ss_pred CCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCC
Confidence 886432110000000 01145556666555433 24578999999999999999999999999999999886432100
Q ss_pred -cch-------hh--------------hhccCCCC------CCcc-------ccccC---------------------Ch
Q 008873 453 -DTF-------YT--------------EKYMGLPS------EDPV-------GYEYS---------------------SV 476 (550)
Q Consensus 453 -~~~-------~~--------------~~~~g~~~------~~~~-------~~~~~---------------------~~ 476 (550)
... +. ..+...+. ...+ .+... ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
T PRK10749 172 LPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQV 251 (330)
T ss_pred CCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHH
Confidence 000 00 00000000 0000 00000 01
Q ss_pred hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC---CCeEEEEcCCCCCcCCCCCc--HHHHHHHHHHHHHHh
Q 008873 477 MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR---KPYEILIFPDERHMPRRHRD--RIYMEERIWEFIERT 549 (550)
Q Consensus 477 ~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~---~~~~~~~~p~~~H~~~~~~~--~~~~~~~~~~fl~~~ 549 (550)
...+.++++|+|++||++|..+++..+..+++++.+.+ .++++++||+++|.+..... +..+++.+++||+++
T Consensus 252 ~~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 252 LAGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred HhhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 23356788999999999999999999999999887765 35689999999999754333 788999999999875
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-22 Score=179.63 Aligned_cols=204 Identities=20% Similarity=0.196 Sum_probs=143.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC---CchhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR---RGLKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~---~~~~~~~~~~~~ 387 (550)
+.+++..|.+. ++.|.||++|+..+-. .....+++.|+++||.|++||+.+... ............
T Consensus 1 ~~ay~~~P~~~----~~~~~Vvv~~d~~G~~-------~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~ 69 (218)
T PF01738_consen 1 IDAYVARPEGG----GPRPAVVVIHDIFGLN-------PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRE 69 (218)
T ss_dssp EEEEEEEETTS----SSEEEEEEE-BTTBS--------HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHH
T ss_pred CeEEEEeCCCC----CCCCEEEEEcCCCCCc-------hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHH
Confidence 46788999864 5789999999954432 122345888999999999999765443 111111111110
Q ss_pred c----CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCC
Q 008873 388 C----GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 463 (550)
Q Consensus 388 ~----~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 463 (550)
+ ......|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++++..|...
T Consensus 70 ~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------- 133 (218)
T PF01738_consen 70 LFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------- 133 (218)
T ss_dssp CHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------
T ss_pred HHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------
Confidence 0 112357888999999999888999999999999999999999876 67899998877100
Q ss_pred CCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC-------CcHH
Q 008873 464 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH-------RDRI 536 (550)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~-------~~~~ 536 (550)
...+.....++++|+|+++|++|+.++.+...++.++|++++.++++++||+++|+|... ....
T Consensus 134 ---------~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~ 204 (218)
T PF01738_consen 134 ---------PPPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAE 204 (218)
T ss_dssp ---------GGGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHH
T ss_pred ---------CCcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHH
Confidence 011345677889999999999999999999999999999999999999999999998542 3457
Q ss_pred HHHHHHHHHHHHhC
Q 008873 537 YMEERIWEFIERTL 550 (550)
Q Consensus 537 ~~~~~~~~fl~~~l 550 (550)
+.++++++||++||
T Consensus 205 ~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 205 DAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcC
Confidence 78999999999987
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=189.37 Aligned_cols=212 Identities=14% Similarity=0.122 Sum_probs=156.1
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||++...+. ..||++|+++++.++++.
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~---------------------------------~~i~~~dl~~g~~~~l~~-------- 243 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGR---------------------------------PRVYLLDLETGQRELVGN-------- 243 (435)
T ss_pred EeeEECCCCCEEEEEEecCCC---------------------------------CEEEEEECCCCcEEEeec--------
Confidence 467899999999998754321 368999999998887743
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......++|||||+.|++...+. +..+||++++++++.++|+..... +..+ .|++|+ ++|.++
T Consensus 244 -~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~~~~Lt~~~~~---~~~~---------~~spDG~~i~f~s~ 309 (435)
T PRK05137 244 -FPGMTFAPRFSPDGRKVVMSLSQG-GNTDIYTMDLRSGTTTRLTDSPAI---DTSP---------SYSPDGSQIVFESD 309 (435)
T ss_pred -CCCcccCcEECCCCCEEEEEEecC-CCceEEEEECCCCceEEccCCCCc---cCce---------eEcCCCCEEEEEEC
Confidence 233456789999999888876554 346899999999999988764321 1111 345554 888898
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++||.+......+ .|||||+.|+|.....+ ..+|+.+++ +++ ..+.++......
T Consensus 310 ~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~-~~SpdG~~ia~~~~~~~--~~~i~~~d~--~~~----~~~~lt~~~~~~ 380 (435)
T PRK05137 310 RSGSPQLYVMNADGSNPRRISFGGGRYSTP-VWSPRGDLIAFTKQGGG--QFSIGVMKP--DGS----GERILTSGFLVE 380 (435)
T ss_pred CCCCCeEEEEECCCCCeEEeecCCCcccCe-EECCCCCEEEEEEcCCC--ceEEEEEEC--CCC----ceEeccCCCCCC
Confidence 888899999999999899999764334444 49999999999986544 368898887 443 445666544456
Q ss_pred EEEECCCCCEEEEeecCCCCC--CEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSP--PRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p--~~l~~~~~~~g~~~~~l~ 281 (550)
.++|||||+.|+|+....... ..||++++.+++ .+.+.
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-~~~l~ 420 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-EREVP 420 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-eEEcc
Confidence 679999999999987765443 689999985544 45554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=182.38 Aligned_cols=212 Identities=18% Similarity=0.173 Sum_probs=153.6
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||++.... ...|+++|+++|+.++++.
T Consensus 202 ~~p~wSPDG~~la~~s~~~g---------------------------------~~~i~i~dl~~G~~~~l~~-------- 240 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESG---------------------------------RSALVIQTLANGAVRQVAS-------- 240 (429)
T ss_pred eeeEEcCCCCEEEEEEecCC---------------------------------CcEEEEEECCCCCeEEccC--------
Confidence 46889999999999875321 1468999999998887742
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......+.|||||+.|++...+. +..+||++++++|+.++|+..... .. .+ .|++|+ ++|.++
T Consensus 241 -~~~~~~~~~~SPDG~~La~~~~~~-g~~~I~~~d~~tg~~~~lt~~~~~---~~----~~-----~wSPDG~~I~f~s~ 306 (429)
T PRK03629 241 -FPRHNGAPAFSPDGSKLAFALSKT-GSLNLYVMDLASGQIRQVTDGRSN---NT----EP-----TWFPDSQNLAYTSD 306 (429)
T ss_pred -CCCCcCCeEECCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEccCCCCC---cC----ce-----EECCCCCEEEEEeC
Confidence 123345689999999998876554 335799999999999888754211 11 11 355554 888999
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++||........+ .|||||+.|+|.+...+. .+||.+++ .++ ..+.|+......
T Consensus 307 ~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~SpDG~~Ia~~~~~~g~--~~I~~~dl--~~g----~~~~Lt~~~~~~ 377 (429)
T PRK03629 307 QAGRPQVYKVNINGGAPQRITWEGSQNQDA-DVSSDGKFMVMVSSNGGQ--QHIAKQDL--ATG----GVQVLTDTFLDE 377 (429)
T ss_pred CCCCceEEEEECCCCCeEEeecCCCCccCE-EECCCCCEEEEEEccCCC--ceEEEEEC--CCC----CeEEeCCCCCCC
Confidence 888899999999998888888643222333 599999999999876553 68999998 333 567777543345
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
++.|||||+.|++...... ...++++++ +|+..+.|..
T Consensus 378 ~p~~SpDG~~i~~~s~~~~-~~~l~~~~~-~G~~~~~l~~ 415 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQGM-GSVLNLVST-DGRFKARLPA 415 (429)
T ss_pred CceECCCCCEEEEEEcCCC-ceEEEEEEC-CCCCeEECcc
Confidence 6789999999998876533 357898888 5655566643
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=159.59 Aligned_cols=202 Identities=20% Similarity=0.254 Sum_probs=154.4
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
-.|+++||-.++.. ....+.++|.++||.|.+|.++|+|-....|......+| .+|+.++.++|.++++
T Consensus 16 ~AVLllHGFTGt~~-------Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy 84 (243)
T COG1647 16 RAVLLLHGFTGTPR-------DVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY 84 (243)
T ss_pred EEEEEEeccCCCcH-------HHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC
Confidence 67888999665532 335578999999999999999999999999999888999 9999999999998875
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch------hhh---hccCCCCCC-ccccccC----
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF------YTE---KYMGLPSED-PVGYEYS---- 474 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~---~~~g~~~~~-~~~~~~~---- 474 (550)
+.|+++|.||||.+++.++.++| .++++..++.......... |.+ .+.+...+. .+.++..
T Consensus 85 ---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~ 159 (243)
T COG1647 85 ---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTP 159 (243)
T ss_pred ---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcch
Confidence 68999999999999999999988 4666666654432211100 001 111111110 0111111
Q ss_pred ------------ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHH
Q 008873 475 ------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 542 (550)
Q Consensus 475 ------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~ 542 (550)
.....++.|..|+|+++|.+|+.||.+.+.-+++.+.. .+.++.+|.+.||.+.....++++.+.+
T Consensus 160 ~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~e~V 237 (243)
T COG1647 160 MTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVEEDV 237 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHHHHH
Confidence 12345677889999999999999999999999988743 4679999999999999989999999999
Q ss_pred HHHHHH
Q 008873 543 WEFIER 548 (550)
Q Consensus 543 ~~fl~~ 548 (550)
+.||+.
T Consensus 238 ~~FL~~ 243 (243)
T COG1647 238 ITFLEK 243 (243)
T ss_pred HHHhhC
Confidence 999973
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=180.95 Aligned_cols=234 Identities=17% Similarity=0.166 Sum_probs=159.4
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.....+...++..+.+..|.|... ++.|+||++||.+.... .|..++..|+++||.|+++|+||+|.+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~----~~~~~Vl~lHG~~~~~~-------~~~~~a~~L~~~Gy~V~~~D~rGhG~S~ 178 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAG----EMRGILIIIHGLNEHSG-------RYLHFAKQLTSCGFGVYAMDWIGHGGSD 178 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCC----CCceEEEEECCchHHHH-------HHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 355667778888999999998642 34589999999765432 2445678899999999999999999875
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC---eeEEEEEcCCcCCcccccc
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~---~~~~~v~~~~~~~~~~~~~ 454 (550)
...... .......+|+.++++++..+. +..++.|+||||||.+++.++. +|+ +++++|+.+|.........
T Consensus 179 ~~~~~~---~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~ 252 (395)
T PLN02652 179 GLHGYV---PSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHP 252 (395)
T ss_pred CCCCCC---cCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchH
Confidence 431100 000112578888888887652 2347999999999999987765 554 7899999988754321100
Q ss_pred h-------hh---hhc--cC-----CC-CCCc----------cccccC--------------ChhhhhhcCCCcEEEEec
Q 008873 455 F-------YT---EKY--MG-----LP-SEDP----------VGYEYS--------------SVMHHVHKMKGKLLLVHG 492 (550)
Q Consensus 455 ~-------~~---~~~--~g-----~~-~~~~----------~~~~~~--------------~~~~~~~~i~~P~lii~G 492 (550)
. +. ..+ .. .+ ..++ ..+... .....+.++++|+|++||
T Consensus 253 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G 332 (395)
T PLN02652 253 IVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHG 332 (395)
T ss_pred HHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 0 00 000 00 00 0000 000000 011234667899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 493 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 493 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++|..+|++.+.++++++.. ...++.+||+++|.+......+++++.+.+||+.++
T Consensus 333 ~~D~vvp~~~a~~l~~~~~~--~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 333 TADRVTDPLASQDLYNEAAS--RHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred CCCCCCCHHHHHHHHHhcCC--CCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999987633 346788899999998665678899999999998764
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=165.56 Aligned_cols=214 Identities=21% Similarity=0.193 Sum_probs=164.2
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+.+++++.+ ..+.+++.+|... .+.|+||++|+-.+-. +.....++.|++.||.|++||.-+..+...
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~~----~~~P~VIv~hei~Gl~-------~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~ 70 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAGA----GGFPGVIVLHEIFGLN-------PHIRDVARRLAKAGYVVLAPDLYGRQGDPT 70 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCcC----CCCCEEEEEecccCCc-------hHHHHHHHHHHhCCcEEEechhhccCCCCC
Confidence 567788766 7899999999875 3449999999954432 123446889999999999999776322211
Q ss_pred hhH---HHHhh----cc-CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 379 KFE---ASIKH----NC-GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 379 ~~~---~~~~~----~~-~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
... ..... .. ......|+.++++||..++.++.++|+++|+|+||.+++.++...| .++|+++..|..-
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~-- 147 (236)
T COG0412 71 DIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLI-- 147 (236)
T ss_pred cccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCC--
Confidence 111 01111 01 1345789999999999998899999999999999999999999766 7899999876421
Q ss_pred cccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC
Q 008873 451 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530 (550)
Q Consensus 451 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~ 530 (550)
.. ......++++|+|+.+|+.|..+|......+.+++...++.+++.+|+++.|+|.
T Consensus 148 --------------~~---------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~ 204 (236)
T COG0412 148 --------------AD---------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFA 204 (236)
T ss_pred --------------CC---------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccc
Confidence 00 0122678899999999999999999999999999999988999999999999996
Q ss_pred CCC----------cHHHHHHHHHHHHHHhC
Q 008873 531 RHR----------DRIYMEERIWEFIERTL 550 (550)
Q Consensus 531 ~~~----------~~~~~~~~~~~fl~~~l 550 (550)
... .....++++++||+++|
T Consensus 205 ~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~ 234 (236)
T COG0412 205 NDRADYHPGYDAAAAEDAWQRVLAFFKRLL 234 (236)
T ss_pred cCCCcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 432 34678999999999875
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=182.11 Aligned_cols=210 Identities=14% Similarity=0.099 Sum_probs=152.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|+|++..++ +.+||++|+++++.++++.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g---------------------------------~~~L~~~dl~tg~~~~lt~-------- 259 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENR---------------------------------KAEIFVQDIYTQVREKVTS-------- 259 (448)
T ss_pred cCceECCCCCEEEEEEecCC---------------------------------CcEEEEEECCCCCeEEecC--------
Confidence 36789999999999875432 1468999999998877743
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......++|||||+.|++...+. +..+||++++++++.++|+..... +..+ .|++|+ ++|.++
T Consensus 260 -~~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~dl~tg~~~~lt~~~~~---~~~p---------~wSpDG~~I~f~s~ 325 (448)
T PRK04792 260 -FPGINGAPRFSPDGKKLALVLSKD-GQPEIYVVDIATKALTRITRHRAI---DTEP---------SWHPDGKSLIFTSE 325 (448)
T ss_pred -CCCCcCCeeECCCCCEEEEEEeCC-CCeEEEEEECCCCCeEECccCCCC---ccce---------EECCCCCEEEEEEC
Confidence 123344689999999888876554 357899999999998888764211 1111 345554 788888
Q ss_pred cCCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCce
Q 008873 163 KTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK 241 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~ 241 (550)
++|..+||++++++++.++||.. .+. ..+ .|+|||+.|+|.....+ ..+||.+++ +++ +++.++.....
T Consensus 326 ~~g~~~Iy~~dl~~g~~~~Lt~~g~~~-~~~-~~SpDG~~l~~~~~~~g--~~~I~~~dl--~~g----~~~~lt~~~~d 395 (448)
T PRK04792 326 RGGKPQIYRVNLASGKVSRLTFEGEQN-LGG-SITPDGRSMIMVNRTNG--KFNIARQDL--ETG----AMQVLTSTRLD 395 (448)
T ss_pred CCCCceEEEEECCCCCEEEEecCCCCC-cCe-eECCCCCEEEEEEecCC--ceEEEEEEC--CCC----CeEEccCCCCC
Confidence 88889999999998888888843 332 223 59999999999877544 368999998 443 45667754333
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.++.|||||+.|+|..... ....+++++. +|+..+.+.
T Consensus 396 ~~ps~spdG~~I~~~~~~~-g~~~l~~~~~-~G~~~~~l~ 433 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQ-GKQVLAAVSI-DGRFKARLP 433 (448)
T ss_pred CCceECCCCCEEEEEEecC-CceEEEEEEC-CCCceEECc
Confidence 4568999999999887643 3457999997 566555564
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=173.43 Aligned_cols=228 Identities=16% Similarity=0.163 Sum_probs=158.9
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~ 376 (550)
.+.+.++..+| .+.+.+|.|.. .+.|+||++|||+......+. +......|+. .|+.|+++|||.....
T Consensus 57 ~~~~~i~~~~g-~i~~~~y~P~~-----~~~p~vv~~HGGg~~~g~~~~----~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTPYG-QVETRLYYPQP-----DSQATLFYLHGGGFILGNLDT----HDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecCCC-ceEEEEECCCC-----CCCCEEEEEeCCcccCCCchh----hhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 57788887777 58999999964 235999999998754321122 2334666765 6999999999987532
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC------CCeeEEEEEcCCcC
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVT 447 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~------~~~~~~~v~~~~~~ 447 (550)
. + ...++|+.++++|+.++ ..+|++||+|+|+|+||.+++.++... +..++++++.+|+.
T Consensus 127 ~--~---------p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 R--F---------PQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred C--C---------CCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 1 1 12378999999998764 347899999999999999999888642 35688899999987
Q ss_pred Ccccccc-----------------hhhhhccCCCCCCccccccCChh-hhhhcCCCcEEEEecCCCCCCChHHHHHHHHH
Q 008873 448 SWDGYDT-----------------FYTEKYMGLPSEDPVGYEYSSVM-HHVHKMKGKLLLVHGMIDENVHFRHTARLINA 509 (550)
Q Consensus 448 ~~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~~~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 509 (550)
+...... ++...|++.+.+... ...+|. ..+..--.|++|++|+.|... .++..+.++
T Consensus 196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~--p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~ 271 (318)
T PRK10162 196 GLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRES--PYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQT 271 (318)
T ss_pred CCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCC--cccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHH
Confidence 7532111 011122222111000 011221 112122369999999999986 488999999
Q ss_pred HHHcCCCeEEEEcCCCCCcCCCC----CcHHHHHHHHHHHHHHhC
Q 008873 510 LVAARKPYEILIFPDERHMPRRH----RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 510 l~~~~~~~~~~~~p~~~H~~~~~----~~~~~~~~~~~~fl~~~l 550 (550)
|+++|++++++++++..|+|... ......++.+.+||+++|
T Consensus 272 L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~ 316 (318)
T PRK10162 272 LAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQL 316 (318)
T ss_pred HHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998432 335677888999998865
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=179.36 Aligned_cols=234 Identities=20% Similarity=0.269 Sum_probs=152.4
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+...++|.+.+|..|.++++.|.... ++.|+||.+||.++... . +. ....++.+||+|+.+|.||.|+.
T Consensus 55 ~vy~v~f~s~~g~~V~g~l~~P~~~~---~~~Pavv~~hGyg~~~~---~----~~-~~~~~a~~G~~vl~~d~rGqg~~ 123 (320)
T PF05448_consen 55 EVYDVSFESFDGSRVYGWLYRPKNAK---GKLPAVVQFHGYGGRSG---D----PF-DLLPWAAAGYAVLAMDVRGQGGR 123 (320)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEES-SS---SSEEEEEEE--TT--GG---G----HH-HHHHHHHTT-EEEEE--TTTSSS
T ss_pred EEEEEEEEccCCCEEEEEEEecCCCC---CCcCEEEEecCCCCCCC---C----cc-cccccccCCeEEEEecCCCCCCC
Confidence 45679999999999999999998532 78999999999655421 1 11 12347899999999999998843
Q ss_pred chhhHHHH------hhccCC----------CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 377 GLKFEASI------KHNCGR----------IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 377 ~~~~~~~~------~~~~~~----------~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
..+..... ....|. ..+.|...++++|.+++.+|.+||++.|.|+||.+++.+++..+ +++++
T Consensus 124 ~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~ 202 (320)
T PF05448_consen 124 SPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAA 202 (320)
T ss_dssp S-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEE
T ss_pred CCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEE
Confidence 32211000 000011 13689999999999999999999999999999999999999865 47888
Q ss_pred EEcCCc-CCccccc------chhhh--hcc----CCCCCCc---cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHH
Q 008873 441 VSGAPV-TSWDGYD------TFYTE--KYM----GLPSEDP---VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 504 (550)
Q Consensus 441 v~~~~~-~~~~~~~------~~~~~--~~~----g~~~~~~---~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 504 (550)
++..|. +|+.... ..|.+ +|+ ..+.... +.+.-.+..+.+++|++|+|+..|-.|+.||+....
T Consensus 203 ~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~f 282 (320)
T PF05448_consen 203 AADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQF 282 (320)
T ss_dssp EEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHH
T ss_pred EecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHH
Confidence 887774 3432210 11111 111 1111111 223445677889999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 505 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
..++++ ..+.++.+||..+|.... ....++.++||.+|
T Consensus 283 A~yN~i---~~~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 283 AAYNAI---PGPKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp HHHCC-----SSEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred HHHhcc---CCCeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 999988 346899999999997622 22257789999876
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-19 Score=178.27 Aligned_cols=211 Identities=14% Similarity=0.122 Sum_probs=152.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||++...+. .+||++|+++++.++++.
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~---------------------------------~~I~~~dl~~g~~~~l~~-------- 237 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKK---------------------------------PVVYVHDLATGRRRVVAN-------- 237 (427)
T ss_pred ccceEcCCCCEEEEEEccCCC---------------------------------cEEEEEECCCCCEEEeec--------
Confidence 467899999999998754221 368999999998877742
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......++|||||+.|++..++. +..+||.+++++++.++|+..... +..+ .|++|+ ++|.++
T Consensus 238 -~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~~~~lt~~~~~---~~~~---------~wSpDG~~l~f~s~ 303 (427)
T PRK02889 238 -FKGSNSAPAWSPDGRTLAVALSRD-GNSQIYTVNADGSGLRRLTQSSGI---DTEP---------FFSPDGRSIYFTSD 303 (427)
T ss_pred -CCCCccceEECCCCCEEEEEEccC-CCceEEEEECCCCCcEECCCCCCC---CcCe---------EEcCCCCEEEEEec
Confidence 233456789999999888876554 346899999999988888653211 1111 345554 788898
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||.+++++++.+++|...-....+ .|||||++|+|.+...+. .+|+.+++ .++ +.++++......
T Consensus 304 ~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~-~~SpDG~~Ia~~s~~~g~--~~I~v~d~--~~g----~~~~lt~~~~~~ 374 (427)
T PRK02889 304 RGGAPQIYRMPASGGAAQRVTFTGSYNTSP-RISPDGKLLAYISRVGGA--FKLYVQDL--ATG----QVTALTDTTRDE 374 (427)
T ss_pred CCCCcEEEEEECCCCceEEEecCCCCcCce-EECCCCCEEEEEEccCCc--EEEEEEEC--CCC----CeEEccCCCCcc
Confidence 888899999999888888887432112233 599999999999876543 68999998 333 456777654456
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+.|||||+.|+|....... ..++++++ +|+..+.+.
T Consensus 375 ~p~~spdg~~l~~~~~~~g~-~~l~~~~~-~g~~~~~l~ 411 (427)
T PRK02889 375 SPSFAPNGRYILYATQQGGR-SVLAAVSS-DGRIKQRLS 411 (427)
T ss_pred CceECCCCCEEEEEEecCCC-EEEEEEEC-CCCceEEee
Confidence 67999999999998765443 57999988 565444553
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=180.02 Aligned_cols=211 Identities=17% Similarity=0.158 Sum_probs=152.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||++.+... .+||++|+++++.++++.
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~---------------------------------~~l~~~~l~~g~~~~l~~-------- 240 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKR---------------------------------PRIFVQNLDTGRREQITN-------- 240 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCC---------------------------------CEEEEEECCCCCEEEccC--------
Confidence 456899999999998754221 368999999998887743
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC--cEEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG--GFIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~ 162 (550)
.......++|||||+.|++...+.. ..+||++++++++.++|+..... +..+ .|++| .++|.++
T Consensus 241 -~~g~~~~~~~SpDG~~la~~~~~~g-~~~Iy~~d~~~~~~~~lt~~~~~---~~~~---------~~spDg~~i~f~s~ 306 (430)
T PRK00178 241 -FEGLNGAPAWSPDGSKLAFVLSKDG-NPEIYVMDLASRQLSRVTNHPAI---DTEP---------FWGKDGRTLYFTSD 306 (430)
T ss_pred -CCCCcCCeEECCCCCEEEEEEccCC-CceEEEEECCCCCeEEcccCCCC---cCCe---------EECCCCCEEEEEEC
Confidence 2234456899999999988766543 46899999999998888753211 1111 34444 3888899
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++||....... ...|||||+.|+|.....+ ..+|+.+++ .++ +.++|+......
T Consensus 307 ~~g~~~iy~~d~~~g~~~~lt~~~~~~~-~~~~Spdg~~i~~~~~~~~--~~~l~~~dl--~tg----~~~~lt~~~~~~ 377 (430)
T PRK00178 307 RGGKPQIYKVNVNGGRAERVTFVGNYNA-RPRLSADGKTLVMVHRQDG--NFHVAAQDL--QRG----SVRILTDTSLDE 377 (430)
T ss_pred CCCCceEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCC--ceEEEEEEC--CCC----CEEEccCCCCCC
Confidence 8899999999998888888885421112 2359999999999987654 368999998 433 567777654444
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+.|||||+.++|+...... ..|+++++ +|...+.+.
T Consensus 378 ~p~~spdg~~i~~~~~~~g~-~~l~~~~~-~g~~~~~l~ 414 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGR-GVLMLVSI-NGRVRLPLP 414 (430)
T ss_pred CceECCCCCEEEEEEecCCc-eEEEEEEC-CCCceEECc
Confidence 56899999999988765433 57999998 454444443
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-19 Score=187.24 Aligned_cols=191 Identities=18% Similarity=0.275 Sum_probs=146.9
Q ss_pred HhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC--CCC------------CCceEEEEe
Q 008873 354 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG--LAK------------VGHIGLYGW 419 (550)
Q Consensus 354 ~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~d------------~~~i~i~G~ 419 (550)
+.++++++||+||.+|.||+++|+..+. .++..+.+|..++|+||..+. +.| ..+|+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 4688999999999999999999877543 234557899999999999542 223 479999999
Q ss_pred chhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-c--------hh--------h----hhcc--CC-------------
Q 008873 420 SYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T--------FY--------T----EKYM--GL------------- 463 (550)
Q Consensus 420 S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~--------~~--------~----~~~~--g~------------- 463 (550)
||||++++.+|+..|+.++|+|+.+++.+|..+. . .+ . .+.. +.
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 9999999999998888999999999998764211 0 00 0 0000 00
Q ss_pred ---------CCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCc
Q 008873 464 ---------PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRD 534 (550)
Q Consensus 464 ---------~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~ 534 (550)
.....+.|...+++.+++++++|+|++||..|.++++.++.+++++|++.+.+.++.+.++ +|.......
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~ 504 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQ 504 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchh
Confidence 0011233455677888999999999999999999999999999999999888888877765 686544445
Q ss_pred HHHHHHHHHHHHHHhC
Q 008873 535 RIYMEERIWEFIERTL 550 (550)
Q Consensus 535 ~~~~~~~~~~fl~~~l 550 (550)
..++.+.+.+||.++|
T Consensus 505 ~~d~~e~~~~Wfd~~L 520 (767)
T PRK05371 505 SIDFRDTMNAWFTHKL 520 (767)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6778899999999886
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=174.15 Aligned_cols=192 Identities=14% Similarity=0.133 Sum_probs=135.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEE--ECCC---CceEEEEEeec
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF--DIKT---GQRKVILVEEL 133 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~--~~~~---g~~~~l~~~~~ 133 (550)
.+||+.++++|+.++++.. ......|+|||||+.|+|+.++.. ..++|.. ++++ |+.++|+....
T Consensus 211 ~~I~~~~l~~g~~~~lt~~---------~g~~~~p~wSPDG~~Laf~s~~~g-~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 211 PKIFLGSLENPAGKKILAL---------QGNQLMPTFSPRKKLLAFISDRYG-NPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred ceEEEEECCCCCceEeecC---------CCCccceEECCCCCEEEEEECCCC-CcceeEEEeecccCCCCcceEeecCCC
Confidence 4689999999998888542 334456899999999999876543 3356664 5554 56677775321
Q ss_pred CceeeccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCC--CceeecccccCeEEEEEEeEeecCCEEEEEEcCC
Q 008873 134 DSWVNLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDIN--GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD 209 (550)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~--~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~ 209 (550)
. .+.. + .|++|+ ++|.++++|..+||+++++ +++.++||.+...+..+ .|||||++|+|.....
T Consensus 281 ~--~~~~----p-----~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p-~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 281 G--TQGN----P-----SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP-AWSPDGKKIAFCSVIK 348 (428)
T ss_pred C--CcCC----e-----EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce-eECCCCCEEEEEEcCC
Confidence 1 0011 1 356655 8888988888999999875 35578888764333444 4999999999998765
Q ss_pred CCceeEEEEEEeCCCCCCCCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 210 GPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 210 ~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
+ ..+|+.+++ .++ +.++|+... ....+.|||||+.|+|+.... ....||++++.+++ .+.++.
T Consensus 349 g--~~~I~v~dl--~~g----~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g~-~~~Lt~ 412 (428)
T PRK01029 349 G--VRQICVYDL--ATG----RDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITKK-TRKIVI 412 (428)
T ss_pred C--CcEEEEEEC--CCC----CeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCC-EEEeec
Confidence 4 368999998 443 567887653 345678999999999887653 34689999997665 455554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-19 Score=176.96 Aligned_cols=211 Identities=15% Similarity=0.099 Sum_probs=152.1
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|+|++.... ..+|+++|+++++.++++.
T Consensus 207 ~~p~wSpDg~~la~~s~~~~---------------------------------~~~l~~~dl~~g~~~~l~~-------- 245 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERG---------------------------------RSAIYVQDLATGQRELVAS-------- 245 (433)
T ss_pred ccccCCCCCCEEEEEecCCC---------------------------------CcEEEEEECCCCCEEEecc--------
Confidence 45689999999999865422 1468999999998877742
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
.......++|||||+.|++...+.. ..+||++++++|+.++|+..... +..+ .|++|+ ++|.++
T Consensus 246 -~~g~~~~~~~SpDG~~l~~~~s~~g-~~~Iy~~d~~~g~~~~lt~~~~~---~~~~---------~~spDG~~l~f~sd 311 (433)
T PRK04922 246 -FRGINGAPSFSPDGRRLALTLSRDG-NPEIYVMDLGSRQLTRLTNHFGI---DTEP---------TWAPDGKSIYFTSD 311 (433)
T ss_pred -CCCCccCceECCCCCEEEEEEeCCC-CceEEEEECCCCCeEECccCCCC---ccce---------EECCCCCEEEEEEC
Confidence 1334456899999998888765543 46899999999999888754211 1111 345544 888899
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++||.+...... ..|||||+.|+|.....+ ..+|+.+++ .++ +.++|+.+....
T Consensus 312 ~~g~~~iy~~dl~~g~~~~lt~~g~~~~~-~~~SpDG~~Ia~~~~~~~--~~~I~v~d~--~~g----~~~~Lt~~~~~~ 382 (433)
T PRK04922 312 RGGRPQIYRVAASGGSAERLTFQGNYNAR-ASVSPDGKKIAMVHGSGG--QYRIAVMDL--STG----SVRTLTPGSLDE 382 (433)
T ss_pred CCCCceEEEEECCCCCeEEeecCCCCccC-EEECCCCCEEEEEECCCC--ceeEEEEEC--CCC----CeEECCCCCCCC
Confidence 88889999999988888888854322223 359999999999876543 368999998 443 466787654455
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+.|||||+.++|..... .-..|+++++ +|+..+.+.
T Consensus 383 ~p~~spdG~~i~~~s~~~-g~~~L~~~~~-~g~~~~~l~ 419 (433)
T PRK04922 383 SPSFAPNGSMVLYATREG-GRGVLAAVST-DGRVRQRLV 419 (433)
T ss_pred CceECCCCCEEEEEEecC-CceEEEEEEC-CCCceEEcc
Confidence 678999999999887653 3468999998 455455554
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=156.61 Aligned_cols=216 Identities=21% Similarity=0.174 Sum_probs=156.9
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~ 375 (550)
..+.+..++..|..+....+.|+.. ..++|++.||.... .. +...+...|. ..++.|+.+||+|.|.
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~-----~~~~lly~hGNa~D--lg-----q~~~~~~~l~~~ln~nv~~~DYSGyG~ 101 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA-----AHPTLLYSHGNAAD--LG-----QMVELFKELSIFLNCNVVSYDYSGYGR 101 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc-----cceEEEEcCCcccc--hH-----HHHHHHHHHhhcccceEEEEecccccc
Confidence 5677778888888888888888763 45899999996222 11 1111122233 3599999999999998
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 455 (550)
++.+..+. ..++|+.++.+||.+... ..++|+++|+|+|...++.+|++.| .+|+|+.+|+++......-
T Consensus 102 S~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~ 171 (258)
T KOG1552|consen 102 SSGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFP 171 (258)
T ss_pred cCCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhcc
Confidence 87654422 348999999999999865 6789999999999999999999988 7999999998764321100
Q ss_pred hhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH
Q 008873 456 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 535 (550)
Q Consensus 456 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~ 535 (550)
-... . -.+........+..+++|+|++||+.|+++++.++.+++++++. +++..+..+++|.-. +..
T Consensus 172 ~~~~-------~-~~~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~---~~epl~v~g~gH~~~--~~~ 238 (258)
T KOG1552|consen 172 DTKT-------T-YCFDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKE---KVEPLWVKGAGHNDI--ELY 238 (258)
T ss_pred Ccce-------E-EeeccccccCcceeccCCEEEEecccCceecccccHHHHHhccc---cCCCcEEecCCCccc--ccC
Confidence 0000 0 11122233567788889999999999999999999999998743 467788889999752 333
Q ss_pred HHHHHHHHHHHH
Q 008873 536 IYMEERIWEFIE 547 (550)
Q Consensus 536 ~~~~~~~~~fl~ 547 (550)
.++.+.+..|+.
T Consensus 239 ~~yi~~l~~f~~ 250 (258)
T KOG1552|consen 239 PEYIEHLRRFIS 250 (258)
T ss_pred HHHHHHHHHHHH
Confidence 456666666664
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-19 Score=167.08 Aligned_cols=232 Identities=22% Similarity=0.223 Sum_probs=159.0
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
..+-.+.+.||..+.+..+.+... +..+||++||..+... .+...+..|..+||.|+++|.||+|.+.
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~-----~~g~Vvl~HG~~Eh~~-------ry~~la~~l~~~G~~V~~~D~RGhG~S~ 76 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEP-----PKGVVVLVHGLGEHSG-------RYEELADDLAARGFDVYALDLRGHGRSP 76 (298)
T ss_pred cccceeecCCCceEEEEeecCCCC-----CCcEEEEecCchHHHH-------HHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 355667788999999999988753 2279999999766543 4555788999999999999999999985
Q ss_pred h--hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc---c
Q 008873 378 L--KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---Y 452 (550)
Q Consensus 378 ~--~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~---~ 452 (550)
+ ...-....++ ..|+.+.++.+... .-..+++|+||||||.+++.++.+++..++++|+.+|...... .
T Consensus 77 r~~rg~~~~f~~~----~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~ 150 (298)
T COG2267 77 RGQRGHVDSFADY----VDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILR 150 (298)
T ss_pred CCCcCCchhHHHH----HHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHH
Confidence 2 1111111111 34444444444432 1246899999999999999999999999999999999876542 0
Q ss_pred cc-----------hhhhhccCC----------CCCCc---cccccC----------------------ChhhhhhcCCCc
Q 008873 453 DT-----------FYTEKYMGL----------PSEDP---VGYEYS----------------------SVMHHVHKMKGK 486 (550)
Q Consensus 453 ~~-----------~~~~~~~g~----------~~~~~---~~~~~~----------------------~~~~~~~~i~~P 486 (550)
.. ....-.... ...++ +.|.+. .......+++.|
T Consensus 151 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~P 230 (298)
T COG2267 151 LILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALP 230 (298)
T ss_pred HHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCC
Confidence 00 000000000 00000 011100 011224456789
Q ss_pred EEEEecCCCCCCC-hHHHHHHHHHHHHcCC-CeEEEEcCCCCCcCCCCCcH--HHHHHHHHHHHHHhC
Q 008873 487 LLLVHGMIDENVH-FRHTARLINALVAARK-PYEILIFPDERHMPRRHRDR--IYMEERIWEFIERTL 550 (550)
Q Consensus 487 ~lii~G~~D~~v~-~~~~~~~~~~l~~~~~-~~~~~~~p~~~H~~~~~~~~--~~~~~~~~~fl~~~l 550 (550)
+||++|+.|.+|+ .....++++++ +. +.++.++|++.|.+....+. ..+++.+.+||.+++
T Consensus 231 vLll~g~~D~vv~~~~~~~~~~~~~---~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 231 VLLLQGGDDRVVDNVEGLARFFERA---GSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred EEEEecCCCccccCcHHHHHHHHhc---CCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 9999999999999 67777777765 43 47999999999998776676 899999999998763
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=163.08 Aligned_cols=191 Identities=13% Similarity=0.084 Sum_probs=125.0
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh--HHHHhhccCC
Q 008873 313 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF--EASIKHNCGR 390 (550)
Q Consensus 313 ~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~--~~~~~~~~~~ 390 (550)
+++|.|++.. +++|+||++||+++... .+...+. +.+++.+.||+|++||++|+++.+..| ........+.
T Consensus 1 ~~ly~P~~~~---~~~P~vv~lHG~~~~~~---~~~~~~~-~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~ 73 (212)
T TIGR01840 1 MYVYVPAGLT---GPRALVLALHGCGQTAS---AYVIDWG-WKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGT 73 (212)
T ss_pred CEEEcCCCCC---CCCCEEEEeCCCCCCHH---HHhhhcC-hHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCC
Confidence 4688898742 57899999999876532 1111111 345566789999999999987544322 1111112233
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc--ccchhhhhccCCCCCCc
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YDTFYTEKYMGLPSEDP 468 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~g~~~~~~ 468 (550)
.+..|+...++++.++..+|++||+|+|+|+||++++.++.++|++|+++++.++...... ....... + .+....
T Consensus 74 ~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~--~-~~~~~~ 150 (212)
T TIGR01840 74 GEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQ--M-CTAATA 150 (212)
T ss_pred ccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhh--c-CCCCCH
Confidence 4678889999999988779999999999999999999999999999999998887532111 0000000 0 000111
Q ss_pred cccccCC-h-hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHc
Q 008873 469 VGYEYSS-V-MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 513 (550)
Q Consensus 469 ~~~~~~~-~-~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 513 (550)
..+.+.. . .....+...|++|+||++|.+||++.+.++++++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 151 ASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 1110000 0 0011122345789999999999999999999999876
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=151.01 Aligned_cols=225 Identities=15% Similarity=0.136 Sum_probs=163.8
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+.+.+++++.|..+++++++.-. ...|+++++|+..+... .......-++.+.+.+|+.++|||.|.+
T Consensus 53 pye~i~l~T~D~vtL~a~~~~~E------~S~pTlLyfh~NAGNmG------hr~~i~~~fy~~l~mnv~ivsYRGYG~S 120 (300)
T KOG4391|consen 53 PYERIELRTRDKVTLDAYLMLSE------SSRPTLLYFHANAGNMG------HRLPIARVFYVNLKMNVLIVSYRGYGKS 120 (300)
T ss_pred CceEEEEEcCcceeEeeeeeccc------CCCceEEEEccCCCccc------chhhHHHHHHHHcCceEEEEEeeccccC
Confidence 56899999999999999999832 35699999999655432 1222223456788999999999999987
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc--
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-- 454 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-- 454 (550)
.....+.. -..|..++++||.+++..|..+|.+.|.|.||.++..+++++.+++.|++...-+........
T Consensus 121 ~GspsE~G-------L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~ 193 (300)
T KOG4391|consen 121 EGSPSEEG-------LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPL 193 (300)
T ss_pred CCCccccc-------eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhhe
Confidence 65433322 156889999999999999999999999999999999999999999999999877665522110
Q ss_pred --hhhhhccCCCCCCccccc-cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC
Q 008873 455 --FYTEKYMGLPSEDPVGYE-YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR 531 (550)
Q Consensus 455 --~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~ 531 (550)
.+..+++. .--++ .......+.+-+.|+|++.|..|+.|||-+..++++.+-.+ ..++..||++.|.-+.
T Consensus 194 v~p~~~k~i~-----~lc~kn~~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~ 266 (300)
T KOG4391|consen 194 VFPFPMKYIP-----LLCYKNKWLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTW 266 (300)
T ss_pred eccchhhHHH-----HHHHHhhhcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceE
Confidence 01111110 00000 11122334455689999999999999999999999887443 4578999999997543
Q ss_pred CCcHHHHHHHHHHHHHHh
Q 008873 532 HRDRIYMEERIWEFIERT 549 (550)
Q Consensus 532 ~~~~~~~~~~~~~fl~~~ 549 (550)
. ..-+++.+.+||.+.
T Consensus 267 i--~dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 267 I--CDGYFQAIEDFLAEV 282 (300)
T ss_pred E--eccHHHHHHHHHHHh
Confidence 2 235678889998763
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=156.33 Aligned_cols=185 Identities=13% Similarity=0.103 Sum_probs=127.6
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC----CchhhHHHHhhccCCC-------chH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR----RGLKFEASIKHNCGRI-------DAE 394 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~----~~~~~~~~~~~~~~~~-------~~~ 394 (550)
++.|+||++||.+++.. .+..+.+.|...++.+..+.++|... .+..|... ....... ...
T Consensus 14 ~~~~~vIlLHG~G~~~~-------~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~-~~~~~~~~~~~~~~~~~ 85 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPV-------AMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSV-QGITEDNRQARVAAIMP 85 (232)
T ss_pred CCCcEEEEEeCCCCChH-------HHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccC-CCCCccchHHHHHHHHH
Confidence 45689999999766543 23445677877765555555555321 12222210 0000001 123
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccC
Q 008873 395 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYS 474 (550)
Q Consensus 395 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 474 (550)
.+.+.++++.++..++.++|+++|+|+||.+++.++..+|+++.++++.++... ..+.
T Consensus 86 ~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-------------~~~~--------- 143 (232)
T PRK11460 86 TFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-------------SLPE--------- 143 (232)
T ss_pred HHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-------------cccc---------
Confidence 344566666667678889999999999999999999888988888887765311 0000
Q ss_pred ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 475 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 475 ~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
....++|+|++||++|++||++.+.++.++|++.+.++++.+||+++|.+.. +..+.+.+||.+.|
T Consensus 144 -----~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l 209 (232)
T PRK11460 144 -----TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTV 209 (232)
T ss_pred -----cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHc
Confidence 1123689999999999999999999999999999999999999999999843 44566777777654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-17 Score=164.22 Aligned_cols=194 Identities=14% Similarity=0.146 Sum_probs=140.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeE--EEEEEecCCCceEEEEEECCCCceEEEEEeecCce
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL--TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~--i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
.+||++|.+++..++|+.. .....+|+|||||+. ++|++.+. +..+||++++++|+.++|+...+..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~---------~~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~- 233 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQE---------HSLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQ- 233 (428)
T ss_pred ceEEEEcCCCCCceEcccC---------CCCcccceEccCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCc-
Confidence 5799999999999988542 334567999999985 55676665 3578999999999999998754321
Q ss_pred eeccCccccCCCCCccCCCc--EEEEEccCCccEEEEE--eCCC---ceeecccccCeEE-EEEEeEeecCCEEEEEEcC
Q 008873 137 VNLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLH--DING---TCLGPITEGDWMV-EQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~--~~~~---~~~~~lT~~~~~~-~~~~~~s~dg~~l~f~~~~ 208 (550)
+.| .|+||+ ++|.+++.|..+||+. ++++ ++.++||.+.... ..+ .|||||++|+|.+++
T Consensus 234 ------~~p-----~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p-~wSPDG~~Laf~s~~ 301 (428)
T PRK01029 234 ------LMP-----TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP-SFSPDGTRLVFVSNK 301 (428)
T ss_pred ------cce-----EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCe-EECCCCCEEEEEECC
Confidence 111 456665 8888888888888885 4433 4678898764332 334 599999999999886
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
++. .+||.+++...+. .+++++...+ ...+.|||||+.|+|+.... ...+|+++++.+++ .+.++..
T Consensus 302 ~g~--~~ly~~~~~~~g~----~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~-~~~Lt~~ 369 (428)
T PRK01029 302 DGR--PRIYIMQIDPEGQ----SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATGR-DYQLTTS 369 (428)
T ss_pred CCC--ceEEEEECccccc----ceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCCC-eEEccCC
Confidence 553 6899988721222 4677876543 45678999999999987643 34689999998776 4666643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-17 Score=161.23 Aligned_cols=192 Identities=13% Similarity=0.078 Sum_probs=142.6
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeE-EEEEEecCCCceEEEEEECCCCceEEEEEeecCce
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL-TAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~-i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
..+|++.|.++...++++.. . ....|+|||||+. +++.+.+. ...+||++|+.+|+.++|+...+..
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~---------~-~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~tg~~~~lt~~~g~~- 235 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKG---------G-LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYTGKKEKIASSQGML- 235 (419)
T ss_pred cceEEEECCCCCceeEEccC---------C-CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCCCcEEEEecCCCcE-
Confidence 36899999999887777431 2 5668999999994 77666654 2458999999999999998633211
Q ss_pred eeccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 137 VNLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
..+ .|++|+ +++...++|..+||++++++++.++||.+......+ .|+|||++|+|++++.+. .
T Consensus 236 --~~~---------~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SPDG~~I~F~Sdr~g~--~ 301 (419)
T PRK04043 236 --VVS---------DVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNG-NFVEDDKRIVFVSDRLGY--P 301 (419)
T ss_pred --Eee---------EECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCcc-EECCCCCEEEEEECCCCC--c
Confidence 001 245554 778777788899999999999999999876422333 599999999999987653 7
Q ss_pred EEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCC-----CCCEEEEEEcCCCceeEeccCC
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLD-----SPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~-----~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
+||.+++ +++ +.++++..... ...|||||++++++..... ...+|+++++.+++ .+.|+..
T Consensus 302 ~Iy~~dl--~~g----~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~~~LT~~ 367 (419)
T PRK04043 302 NIFMKKL--NSG----SVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-IRRLTAN 367 (419)
T ss_pred eEEEEEC--CCC----CeEeCccCCCc-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-eEECCCC
Confidence 9999999 444 56677764323 4589999999999876532 23689999997776 5777763
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=160.15 Aligned_cols=192 Identities=17% Similarity=0.144 Sum_probs=143.6
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
..+||++|.+++..++++.. ...+..|+|||||+.|+|...+. ...+||++++++|+.+.|+......
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~---------~~~~~~p~wSPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~-- 245 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRS---------PQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN-- 245 (429)
T ss_pred ceeEEEEcCCCCCCEEeecC---------CCceeeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc--
Confidence 35899999999888877542 44678899999999998886543 3468999999999998887543221
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.. +.|++|+ ++|.+.+.|..+||++++++++.++||.+...+..+ .|+|||+.|+|.+++.+. .+
T Consensus 246 -----~~-----~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~-~wSPDG~~I~f~s~~~g~--~~ 312 (429)
T PRK03629 246 -----GA-----PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAYTSDQAGR--PQ 312 (429)
T ss_pred -----CC-----eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCce-EECCCCCEEEEEeCCCCC--ce
Confidence 01 1355655 677777788889999999999999999876544445 499999999999987543 68
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
||.+++ +++ ..++++...+ ...+.|||||++|+++.... ...+++++++.+++ .+.|+.
T Consensus 313 Iy~~d~--~~g----~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~-~~~Lt~ 372 (429)
T PRK03629 313 VYKVNI--NGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGG-VQVLTD 372 (429)
T ss_pred EEEEEC--CCC----CeEEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCC-eEEeCC
Confidence 999998 443 4567765433 34568999999999886543 34689999997776 566664
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=149.53 Aligned_cols=217 Identities=21% Similarity=0.178 Sum_probs=154.0
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.-.++|++.+|..|.+|+..|...+ ++.|+||..||..+... .|.. .-.++..||+|+.+|.||.|++.
T Consensus 56 ~ydvTf~g~~g~rI~gwlvlP~~~~---~~~P~vV~fhGY~g~~g---~~~~-----~l~wa~~Gyavf~MdvRGQg~~~ 124 (321)
T COG3458 56 VYDVTFTGYGGARIKGWLVLPRHEK---GKLPAVVQFHGYGGRGG---EWHD-----MLHWAVAGYAVFVMDVRGQGSSS 124 (321)
T ss_pred EEEEEEeccCCceEEEEEEeecccC---CccceEEEEeeccCCCC---Cccc-----cccccccceeEEEEecccCCCcc
Confidence 3568889999999999999998753 78999999999655543 2221 23467899999999999988763
Q ss_pred hh----hHH-H-----Hhhcc-------CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 378 LK----FEA-S-----IKHNC-------GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 378 ~~----~~~-~-----~~~~~-------~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
.+ ... . +.+.. -..-+.|...+++.+...+.+|.+||++.|+|.||.+++.+++.. .+++++
T Consensus 125 ~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~ 203 (321)
T COG3458 125 QDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAV 203 (321)
T ss_pred ccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhcc
Confidence 21 000 0 00111 112478999999999999999999999999999999999999864 567999
Q ss_pred EEcCCcCC-ccccc-----chhhh--hcc--CCCCC--CccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHH
Q 008873 441 VSGAPVTS-WDGYD-----TFYTE--KYM--GLPSE--DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLIN 508 (550)
Q Consensus 441 v~~~~~~~-~~~~~-----~~~~~--~~~--g~~~~--~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 508 (550)
++..|+.. +...- ..|.+ +|+ ..|.+ ..+.+.-.+..+.+.++|+|+|+..|-.|++|||..-..+++
T Consensus 204 ~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN 283 (321)
T COG3458 204 VADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYN 283 (321)
T ss_pred cccccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhh
Confidence 99888753 22110 01111 121 11111 112223345566788899999999999999999998888888
Q ss_pred HHHHcCCCeEEEEcCCCCCcC
Q 008873 509 ALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 509 ~l~~~~~~~~~~~~p~~~H~~ 529 (550)
++ -.+.++.+||.-+|.-
T Consensus 284 ~l---~~~K~i~iy~~~aHe~ 301 (321)
T COG3458 284 AL---TTSKTIEIYPYFAHEG 301 (321)
T ss_pred cc---cCCceEEEeecccccc
Confidence 87 3456778888878864
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=160.39 Aligned_cols=235 Identities=16% Similarity=0.164 Sum_probs=147.2
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+...++..||..+.......... ..+.|+||++||.++... .. ....+++.|+++||.|+++|+||+|++
T Consensus 30 ~~~~~~~~~~dg~~~~l~w~~~~~~---~~~~p~vll~HG~~g~~~--~~---~~~~~~~~l~~~G~~v~~~d~rG~g~~ 101 (324)
T PRK10985 30 TPYWQRLELPDGDFVDLAWSEDPAQ---ARHKPRLVLFHGLEGSFN--SP---YAHGLLEAAQKRGWLGVVMHFRGCSGE 101 (324)
T ss_pred CcceeEEECCCCCEEEEecCCCCcc---CCCCCEEEEeCCCCCCCc--CH---HHHHHHHHHHHCCCEEEEEeCCCCCCC
Confidence 3445557778887665443221111 135689999999765432 11 123346788899999999999999866
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC--eeEEEEEcCCcCCccc---
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAPVTSWDG--- 451 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~--~~~~~v~~~~~~~~~~--- 451 (550)
....... ......+|+..+++++.++. ...+++++||||||.+++.+++++++ .+++++++++..+...
T Consensus 102 ~~~~~~~----~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~ 175 (324)
T PRK10985 102 PNRLHRI----YHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSY 175 (324)
T ss_pred ccCCcce----ECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHH
Confidence 4321111 11224789999999998763 34679999999999988887776643 3777777777655320
Q ss_pred ---------ccchhh-----------hhccCC-CC--------------------------CCccccccCChhhhhhcCC
Q 008873 452 ---------YDTFYT-----------EKYMGL-PS--------------------------EDPVGYEYSSVMHHVHKMK 484 (550)
Q Consensus 452 ---------~~~~~~-----------~~~~g~-~~--------------------------~~~~~~~~~~~~~~~~~i~ 484 (550)
+...+. ..+.+. +. ...+.|...+....+.+++
T Consensus 176 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~ 255 (324)
T PRK10985 176 RMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIR 255 (324)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCC
Confidence 100000 000010 00 0012233345556678899
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC----CCcHHHHHHHHHHHHHHh
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERT 549 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~----~~~~~~~~~~~~~fl~~~ 549 (550)
+|+|+++|++|..++++....+. +...++++.+++++||...- ........+.+.+||...
T Consensus 256 ~P~lii~g~~D~~~~~~~~~~~~----~~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~ 320 (324)
T PRK10985 256 KPTLIIHAKDDPFMTHEVIPKPE----SLPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTY 320 (324)
T ss_pred CCEEEEecCCCCCCChhhChHHH----HhCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHh
Confidence 99999999999999877555442 22356888999999996421 112235567788888654
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=170.81 Aligned_cols=230 Identities=18% Similarity=0.227 Sum_probs=153.0
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
+..||.+|.+.++.|.+. ++.|+||++||....... .+... ....+.|+++||+|+++|+||+|.++..+..
T Consensus 2 ~~~DG~~L~~~~~~P~~~----~~~P~Il~~~gyg~~~~~--~~~~~-~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~- 73 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAGG----GPVPVILSRTPYGKDAGL--RWGLD-KTEPAWFVAQGYAVVIQDTRGRGASEGEFDL- 73 (550)
T ss_pred cCCCCCEEEEEEEecCCC----CCCCEEEEecCCCCchhh--ccccc-cccHHHHHhCCcEEEEEeccccccCCCceEe-
Confidence 567999999999999753 578999999986543210 01111 1135788999999999999999988765321
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc---c-------
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---D------- 453 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~---~------- 453 (550)
++..+.+|+.++++|+.++++.+ .+|+++|+||||++++.++..+|+.++|++..++..+.... .
T Consensus 74 ----~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~g~~~~~~ 148 (550)
T TIGR00976 74 ----LGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFPGALRLDV 148 (550)
T ss_pred ----cCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccCCeeccch
Confidence 22456899999999999998766 69999999999999999999889999999998887663210 0
Q ss_pred --chhh----hhccCCCC-----------------------------------------------CCccccccCChhhhh
Q 008873 454 --TFYT----EKYMGLPS-----------------------------------------------EDPVGYEYSSVMHHV 480 (550)
Q Consensus 454 --~~~~----~~~~g~~~-----------------------------------------------~~~~~~~~~~~~~~~ 480 (550)
.+.. ....+.+. ...+.+...+....+
T Consensus 149 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 228 (550)
T TIGR00976 149 LLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVSISLWRDL 228 (550)
T ss_pred hHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhccCchhhHh
Confidence 0000 00000000 000111223344467
Q ss_pred hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC--------CCcHHHHHH--HHHHHHHHhC
Q 008873 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR--------HRDRIYMEE--RIWEFIERTL 550 (550)
Q Consensus 481 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~--------~~~~~~~~~--~~~~fl~~~l 550 (550)
+++++|+|++.|-.|. ....+.+.++++.+.+ +.++++=|. .|.... ......... ..++||++||
T Consensus 229 ~~i~vP~l~~~gw~D~--~~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~~~~~wfD~~L 304 (550)
T TIGR00976 229 GGSDVPTLVTGGWYDN--HSRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEAEQLAFFDRHL 304 (550)
T ss_pred cCCCCCEEEeCcccCC--CCchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhhhhHHHHHHHh
Confidence 7899999999999994 5567778888876654 456665454 575110 001111122 4689999886
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=163.06 Aligned_cols=207 Identities=14% Similarity=0.070 Sum_probs=153.8
Q ss_pred eEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCCC
Q 008873 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNY 85 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 85 (550)
...|||||+.|+|+.+..++. .+++++++++++..++. .
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~--------------------------------~~i~~~~l~~g~~~~i~---------~ 235 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGC--------------------------------PRIYYLDLNTGKRPVIL---------N 235 (425)
T ss_pred ccccCcCCCceEEEEEecCCC--------------------------------ceEEEEeccCCccceee---------c
Confidence 357999999999997654331 36899999998776552 2
Q ss_pred CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEcc
Q 008873 86 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASEK 163 (550)
Q Consensus 86 ~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~ 163 (550)
.......|+|||||+.++|+..|. ...+||++|+.+++.++|+...+.. ..| +|++|+ ++|.|++
T Consensus 236 ~~g~~~~P~fspDG~~l~f~~~rd-g~~~iy~~dl~~~~~~~Lt~~~gi~---~~P---------s~spdG~~ivf~Sdr 302 (425)
T COG0823 236 FNGNNGAPAFSPDGSKLAFSSSRD-GSPDIYLMDLDGKNLPRLTNGFGIN---TSP---------SWSPDGSKIVFTSDR 302 (425)
T ss_pred cCCccCCccCCCCCCEEEEEECCC-CCccEEEEcCCCCcceecccCCccc---cCc---------cCCCCCCEEEEEeCC
Confidence 345566789999999999999888 5678999999999988877654321 122 455555 9999999
Q ss_pred CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEE
Q 008873 164 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV 243 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~ 243 (550)
.|..+||++++++++.+++|....... ...|||||++|+|.....+ ...+...++. .+. ..+.++.......
T Consensus 303 ~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g--~~~i~~~~~~-~~~----~~~~lt~~~~~e~ 374 (425)
T COG0823 303 GGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGG--QWDIDKNDLA-SGG----KIRILTSTYLNES 374 (425)
T ss_pred CCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCC--ceeeEEeccC-CCC----cEEEccccccCCC
Confidence 999999999999999999997532222 3459999999999985433 2667776763 222 3566666555667
Q ss_pred EEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 244 ~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
.+++++|+.+++..... .-+.++.+++ +++.
T Consensus 375 ps~~~ng~~i~~~s~~~-~~~~l~~~s~-~g~~ 405 (425)
T COG0823 375 PSWAPNGRMIMFSSGQG-GGSVLSLVSL-DGRV 405 (425)
T ss_pred CCcCCCCceEEEeccCC-CCceEEEeec-ccee
Confidence 78999999999987776 4457777776 4543
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=159.80 Aligned_cols=212 Identities=23% Similarity=0.273 Sum_probs=141.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccc---ccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDS---WINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~---~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
||++|.+.+|+| +. ...+++|+||..|+.......... ...........++++||+||..|.||.|.|+..+...
T Consensus 1 DGv~L~adv~~P-~~-~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~ 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GA-DGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM 78 (272)
T ss_dssp TS-EEEEEEEEE----TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT
T ss_pred CCCEEEEEEEec-CC-CCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC
Confidence 789999999999 22 223799999999985532110000 0001111223499999999999999999998877643
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-c-------cc-
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y-------DT- 454 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-~-------~~- 454 (550)
...+.+|..++|+|+.++++.+ .||+++|.||+|+.++.+|...|..++|++...+..|+.. . ..
T Consensus 79 -----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 79 -----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp -----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred -----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 3345899999999999998754 6999999999999999999988888999999888776532 0 00
Q ss_pred ---hh------hhhccCC-------------------------------------CCCCccccccCChhhhhhcCCCcEE
Q 008873 455 ---FY------TEKYMGL-------------------------------------PSEDPVGYEYSSVMHHVHKMKGKLL 488 (550)
Q Consensus 455 ---~~------~~~~~g~-------------------------------------~~~~~~~~~~~~~~~~~~~i~~P~l 488 (550)
.+ ....... .....+.|.+.++...++++++|+|
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l 232 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVL 232 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEE
Confidence 01 0000000 0111233445566667899999999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcC-CCeEEEEcCCCCCc
Q 008873 489 LVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM 528 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~p~~~H~ 528 (550)
+++|..|.... ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 233 ~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 233 IVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred EecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999997777 89999999998887 6678877765 564
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-17 Score=156.27 Aligned_cols=233 Identities=15% Similarity=0.124 Sum_probs=143.0
Q ss_pred hhcCCCCCCeEEEEEcCCCcE--EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEE
Q 008873 290 IKRLQLEPPDIVQIQANDGTV--LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWK 367 (550)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~g~~--l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~ 367 (550)
++.+.+ ....+.+...+|.. +++... +. ...|.||++||.+.... .|......|+++||.|++
T Consensus 14 ~~~~~~-~~~~~~~~~~~~~~~~i~y~~~---G~----~~~~~lvliHG~~~~~~-------~w~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 14 LPDYPF-APHYVDVDDGDGGPLRMHYVDE---GP----ADGPPVLLLHGEPSWSY-------LYRKMIPILAAAGHRVIA 78 (302)
T ss_pred CcCCCC-CceeEeecCCCCceEEEEEEec---CC----CCCCEEEEECCCCCchh-------hHHHHHHHHHhCCCEEEE
Confidence 334444 44566666555654 443322 21 12367899999765432 345567788888999999
Q ss_pred ECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 368 LDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 368 ~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
+|.||+|.+...... ....++++.+.+..+.++ ++.+++.|+||||||.++..++.++|++++++++.++..
T Consensus 79 ~Dl~G~G~S~~~~~~------~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 150 (302)
T PRK00870 79 PDLIGFGRSDKPTRR------EDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGL 150 (302)
T ss_pred ECCCCCCCCCCCCCc------ccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCC
Confidence 999999987532110 112344544444444443 244689999999999999999999999999999887532
Q ss_pred Cccc------ccch---------------hh------------hhccCCCCCCc---c---cccc---C---C-------
Q 008873 448 SWDG------YDTF---------------YT------------EKYMGLPSEDP---V---GYEY---S---S------- 475 (550)
Q Consensus 448 ~~~~------~~~~---------------~~------------~~~~g~~~~~~---~---~~~~---~---~------- 475 (550)
.... +..+ .. ..+. .+.... . .+.. . .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T PRK00870 151 PTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYD-APFPDESYKAGARAFPLLVPTSPDDPAVAANR 229 (302)
T ss_pred CCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhh-cccCChhhhcchhhhhhcCCCCCCCcchHHHH
Confidence 1000 0000 00 0000 000000 0 0000 0 0
Q ss_pred -hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 476 -VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 476 -~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
....+.++++|+|+++|++|..+|... .++.+.+.. .....+.++++++|.+ ..++...+.+.+.+||+++
T Consensus 230 ~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~-~~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 230 AAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPG-AAGQPHPTIKGAGHFL-QEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhccc-ccccceeeecCCCccc-hhhChHHHHHHHHHHHhcC
Confidence 012356788999999999999999755 556555432 1123477899999997 5577789999999999875
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=160.64 Aligned_cols=192 Identities=15% Similarity=0.176 Sum_probs=142.2
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
..+||++|.+++..++++. ....+..|+|||||+.|+|+..+.. ..+||++++++|+.++|+...+..
T Consensus 181 ~~~l~~~d~dg~~~~~lt~---------~~~~v~~p~wSpDG~~lay~s~~~g-~~~i~~~dl~~g~~~~l~~~~g~~-- 248 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTD---------GSSLVLTPRFSPNRQEITYMSYANG-RPRVYLLDLETGQRELVGNFPGMT-- 248 (435)
T ss_pred ceEEEEECCCCCCcEEEec---------CCCCeEeeEECCCCCEEEEEEecCC-CCEEEEEECCCCcEEEeecCCCcc--
Confidence 4689999999998888853 2446788999999999999876543 468999999999998887543221
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
..+ .|++|+ +++.+.++|..+||++++++++.++||.+......+ .|+|||++|+|.+++.+. .+
T Consensus 249 -----~~~-----~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~-~~spDG~~i~f~s~~~g~--~~ 315 (435)
T PRK05137 249 -----FAP-----RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSP-SYSPDGSQIVFESDRSGS--PQ 315 (435)
T ss_pred -----cCc-----EECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCce-eEcCCCCEEEEEECCCCC--Ce
Confidence 111 345554 777777788899999999999999999866433334 599999999999876553 68
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
||.+++ ++. ..++++...+ ...+.|||||+.|+++..... ...++++++.++. .+.++.
T Consensus 316 Iy~~d~--~g~----~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~~~~~-~~~lt~ 375 (435)
T PRK05137 316 LYVMNA--DGS----NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKPDGSG-ERILTS 375 (435)
T ss_pred EEEEEC--CCC----CeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEECCCCc-eEeccC
Confidence 999998 444 5677876543 455689999999998865433 3489999985444 455543
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=157.05 Aligned_cols=201 Identities=16% Similarity=0.192 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.... .|...+ .....+.+.||.|+++|+||+|.+...... ........+|+.+.++.+
T Consensus 31 ~~ivllHG~~~~~~---~~~~~~-~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~---~~~~~~~~~~l~~~l~~l----- 98 (282)
T TIGR03343 31 EAVIMLHGGGPGAG---GWSNYY-RNIGPFVDAGYRVILKDSPGFNKSDAVVMD---EQRGLVNARAVKGLMDAL----- 98 (282)
T ss_pred CeEEEECCCCCchh---hHHHHH-HHHHHHHhCCCEEEEECCCCCCCCCCCcCc---ccccchhHHHHHHHHHHc-----
Confidence 57899999755432 232111 123456678999999999999987542110 000111244555544443
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-c--------cchh-------h---hhcc-----CCC
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y--------DTFY-------T---EKYM-----GLP 464 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-~--------~~~~-------~---~~~~-----g~~ 464 (550)
+.+++.++||||||++++.++.++|++++++|+.+|...... . ...+ . ..++ ...
T Consensus 99 -~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (282)
T TIGR03343 99 -DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQS 177 (282)
T ss_pred -CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcc
Confidence 557999999999999999999999999999999876421100 0 0000 0 0000 000
Q ss_pred C--------------CCcc---c---------cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 465 S--------------EDPV---G---------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 465 ~--------------~~~~---~---------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
. ..+. . +...+....+.++++|+|+++|++|..+++..+.++.+.+ .+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~----~~~~ 253 (282)
T TIGR03343 178 LITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNM----PDAQ 253 (282)
T ss_pred cCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhC----CCCE
Confidence 0 0000 0 0011122346788999999999999999998888777655 4688
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
++++|++||.+ ..+....+.+.+.+||.
T Consensus 254 ~~~i~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 254 LHVFSRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred EEEeCCCCcCC-cccCHHHHHHHHHHHhh
Confidence 99999999997 55777888899999985
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=159.94 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=142.2
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
...+.|||||++|||++.++.. .+|+++|+++++.++++..
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~---------------------------------~~i~i~dl~tg~~~~l~~~------ 246 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKK---------------------------------SQLVVHDLRSGARKVVASF------ 246 (429)
T ss_pred cccceEcCCCCEEEEEEecCCC---------------------------------cEEEEEeCCCCceEEEecC------
Confidence 3567899999999998764321 3689999999987766421
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWAS 161 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s 161 (550)
......++|||||+.|++...+. +..+||.+++++++.++|+..... ... + .|++|+ ++|.+
T Consensus 247 ---~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~d~~~~~~~~lt~~~~~---~~~----~-----~wSpDG~~i~f~s 310 (429)
T PRK01742 247 ---RGHNGAPAFSPDGSRLAFASSKD-GVLNIYVMGANGGTPSQLTSGAGN---NTE----P-----SWSPDGQSILFTS 310 (429)
T ss_pred ---CCccCceeECCCCCEEEEEEecC-CcEEEEEEECCCCCeEeeccCCCC---cCC----E-----EECCCCCEEEEEE
Confidence 22334689999999988876543 345799999999998888763221 111 1 355554 78888
Q ss_pred ccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCce
Q 008873 162 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK 241 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~ 241 (550)
++.|..+||.++..++..++++...+ . ..|+|||+.|++.+. ..++.+++. +| ..+.++.....
T Consensus 311 ~~~g~~~I~~~~~~~~~~~~l~~~~~---~-~~~SpDG~~ia~~~~------~~i~~~Dl~-~g-----~~~~lt~~~~~ 374 (429)
T PRK01742 311 DRSGSPQVYRMSASGGGASLVGGRGY---S-AQISADGKTLVMING------DNVVKQDLT-SG-----STEVLSSTFLD 374 (429)
T ss_pred CCCCCceEEEEECCCCCeEEecCCCC---C-ccCCCCCCEEEEEcC------CCEEEEECC-CC-----CeEEecCCCCC
Confidence 88899999999988877777754321 2 359999999999865 246777872 23 34555543223
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+++|||||+.|++.... .....+++++. +|+..+.+.
T Consensus 375 ~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~-~G~~~~~l~ 412 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQ-GLGKVLQLVSA-DGRFKARLP 412 (429)
T ss_pred CCceECCCCCEEEEEEcC-CCceEEEEEEC-CCCceEEcc
Confidence 556899999999888654 33345677665 566666664
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=161.37 Aligned_cols=237 Identities=19% Similarity=0.146 Sum_probs=148.9
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..++..++..||..+...++.+... ..+...|+||++||..++.. ..| +......+.++||.|+++|+||+|++
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~-~~~~~~p~vvllHG~~g~s~--~~y---~~~~~~~~~~~g~~vv~~d~rG~G~s 143 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDR-ALPADAPVLILLPGLTGGSD--DSY---VRHMLLRARSKGWRVVVFNSRGCADS 143 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccc-cCCCCCCEEEEECCCCCCCC--CHH---HHHHHHHHHHCCCEEEEEecCCCCCC
Confidence 4566678888998887665543221 11134589999999765432 111 12234556789999999999999987
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCe--eEEEEEcCCcCCcc----
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV--FQCAVSGAPVTSWD---- 450 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~--~~~~v~~~~~~~~~---- 450 (550)
...-. ..+.....+|+.++++++..+. ...++.++|+||||.+++.++.++++. +.+++++++..+..
T Consensus 144 ~~~~~----~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~ 217 (388)
T PLN02511 144 PVTTP----QFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADE 217 (388)
T ss_pred CCCCc----CEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHH
Confidence 53211 1111234789999999998763 245899999999999999999998876 67777666554421
Q ss_pred --------cccchhh----------hhcc-CCC---------------------------CCCc-cccccCChhhhhhcC
Q 008873 451 --------GYDTFYT----------EKYM-GLP---------------------------SEDP-VGYEYSSVMHHVHKM 483 (550)
Q Consensus 451 --------~~~~~~~----------~~~~-g~~---------------------------~~~~-~~~~~~~~~~~~~~i 483 (550)
.+...+. ...+ ..+ .... +.|...++...+.+|
T Consensus 218 ~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I 297 (388)
T PLN02511 218 DFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHV 297 (388)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccC
Confidence 0000000 0000 000 0000 112344556678889
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC--CCc---HHHHHHHHHHHHHH
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR--HRD---RIYMEERIWEFIER 548 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~--~~~---~~~~~~~~~~fl~~ 548 (550)
++|+|+|+|++|+.+|...... .+.+...++++.+++++||.... +.. .....+.+.+||+.
T Consensus 298 ~vPtLiI~g~dDpi~p~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 298 RVPLLCIQAANDPIAPARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred CCCeEEEEcCCCCcCCcccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999999999998764321 12223467899999999997522 111 11246778888865
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=141.49 Aligned_cols=145 Identities=23% Similarity=0.210 Sum_probs=111.9
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 409 (550)
+||++||...... .+..+++.|+++||.|+.+|+|+.+.+.. ..+...+++++.+...
T Consensus 1 ~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~- 58 (145)
T PF12695_consen 1 VVVLLHGWGGSRR-------DYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGYP- 58 (145)
T ss_dssp EEEEECTTTTTTH-------HHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHHC-
T ss_pred CEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhcC-
Confidence 5789999766532 24456889999999999999999886632 1244555555433222
Q ss_pred CCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEE
Q 008873 410 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLL 489 (550)
Q Consensus 410 d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~li 489 (550)
|.++|+++|||+||.+++.++.++ ..++++|+.+|.. ....+.+.+.|+|+
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~----------------------------~~~~~~~~~~pv~~ 109 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYP----------------------------DSEDLAKIRIPVLF 109 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHHHS-TTESEEEEESESS----------------------------GCHHHTTTTSEEEE
T ss_pred CCCcEEEEEEccCcHHHHHHhhhc-cceeEEEEecCcc----------------------------chhhhhccCCcEEE
Confidence 889999999999999999999987 7789999988720 02345566779999
Q ss_pred EecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 490 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 490 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
++|++|..+++++..++++++. .+.++.++++++|+
T Consensus 110 i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 110 IHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp EEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred EEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 9999999999999999999884 67899999999995
|
... |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-17 Score=156.23 Aligned_cols=236 Identities=14% Similarity=0.112 Sum_probs=146.1
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccccc---------------ccc----hhHhHHHHhCCc
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI---------------NTV----DMRAQYLRSKGI 363 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---------------~~~----~~~~~~l~~~G~ 363 (550)
|++.||..|....+.|.. +..+|+++||-.+.....-... .++ ..+++.|+++||
T Consensus 2 ~~~~~g~~l~~~~~~~~~------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~ 75 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGY 75 (332)
T ss_pred ccCCCCCeEEEeeeeccC------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCC
Confidence 566789999999998853 3479999999544432000000 011 235789999999
Q ss_pred EEEEECCCCCCCCchhhHHHHh-hccCCCchHHHHHHHHHHHHc------------------CCCCCCceEEEEechhHH
Q 008873 364 LVWKLDNRGTARRGLKFEASIK-HNCGRIDAEDQLTGAEWLIKQ------------------GLAKVGHIGLYGWSYGGY 424 (550)
Q Consensus 364 ~vv~~d~rG~g~~~~~~~~~~~-~~~~~~~~~D~~~~~~~l~~~------------------~~~d~~~i~i~G~S~GG~ 424 (550)
.|+++|+||+|.+...-..... ..+ ..-++|+...++.+.+. .+-...+++|+||||||.
T Consensus 76 ~V~~~D~rGHG~S~~~~~~~g~~~~~-~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~ 154 (332)
T TIGR01607 76 SVYGLDLQGHGESDGLQNLRGHINCF-DDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGN 154 (332)
T ss_pred cEEEecccccCCCccccccccchhhH-HHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccH
Confidence 9999999999976532000000 000 01146677777766541 111135799999999999
Q ss_pred HHHHHHhhCCC--------eeEEEEEcCCcCCcccc--------cc----h------hhhhc-cCC-------CC-----
Q 008873 425 LSAITLARFPD--------VFQCAVSGAPVTSWDGY--------DT----F------YTEKY-MGL-------PS----- 465 (550)
Q Consensus 425 ~a~~~~~~~~~--------~~~~~v~~~~~~~~~~~--------~~----~------~~~~~-~g~-------~~----- 465 (550)
+++.++..+++ .++++|+.+|....... .. . +.... .+. +.
T Consensus 155 i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 234 (332)
T TIGR01607 155 IALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDII 234 (332)
T ss_pred HHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHH
Confidence 99988765432 57888887776432110 00 0 00000 000 00
Q ss_pred -CCccccccC-C-------------hhhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 466 -EDPVGYEYS-S-------------VMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 466 -~~~~~~~~~-~-------------~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
.++..+... + ....+.++ ++|+|++||+.|..+++..+.++++++.. .+.++.+|++++|.
T Consensus 235 ~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~ 312 (332)
T TIGR01607 235 KFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHV 312 (332)
T ss_pred hcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCC
Confidence 001001000 0 01123445 58999999999999999999888876532 35788999999999
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 008873 529 PRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 529 ~~~~~~~~~~~~~~~~fl~ 547 (550)
+.......++.+.+.+||+
T Consensus 313 i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 313 ITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CccCCCHHHHHHHHHHHhh
Confidence 8766667889999999986
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=149.60 Aligned_cols=231 Identities=16% Similarity=0.135 Sum_probs=145.2
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+.+.|.. +|..+.+.++.|.+. + .|.||++|||+.... ..+ ..+..+++.|+++||.|+++|+||+|.+..
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~----~-~~~vv~i~gg~~~~~--g~~-~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~ 73 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS----H-TTGVLIVVGGPQYRV--GSH-RQFVLLARRLAEAGFPVLRFDYRGMGDSEG 73 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC----C-CCeEEEEeCCccccC--Cch-hHHHHHHHHHHHCCCEEEEeCCCCCCCCCC
Confidence 4567765 578899999999753 2 245666777654321 011 123345788999999999999999997753
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc--c---
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--D--- 453 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~--~--- 453 (550)
... ... ...+|+.++++++.++.. ..++|+++|||+||.+++.++.. +..++++|+.+|....... .
T Consensus 74 ~~~--~~~----~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~ 145 (274)
T TIGR03100 74 ENL--GFE----GIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRI 145 (274)
T ss_pred CCC--CHH----HHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHH
Confidence 211 111 125789999999976521 23679999999999999988764 5678999999887431110 0
Q ss_pred -chhh---------hhc-cCCCCCCc---cc-------c-----------ccCChhhhhhcCCCcEEEEecCCCCCCChH
Q 008873 454 -TFYT---------EKY-MGLPSEDP---VG-------Y-----------EYSSVMHHVHKMKGKLLLVHGMIDENVHFR 501 (550)
Q Consensus 454 -~~~~---------~~~-~g~~~~~~---~~-------~-----------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~ 501 (550)
..+. .+. .|. +... .. + ........+.++++|+|+++|+.|...+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~ 224 (274)
T TIGR03100 146 RHYYLGQLLSADFWRKLLSGE-VNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEF 224 (274)
T ss_pred HHHHHHHHhChHHHHHhcCCC-ccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHH
Confidence 0000 001 010 0000 00 0 000112335567899999999999864311
Q ss_pred HHHHHH--HHHHH--cCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 502 HTARLI--NALVA--ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 502 ~~~~~~--~~l~~--~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
...+. ....+ ....+++..+|+++|.+.....+..+.+.+.+||++
T Consensus 225 -~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 225 -ADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred -HHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 10000 22222 125688999999999887778889999999999963
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=154.41 Aligned_cols=191 Identities=18% Similarity=0.143 Sum_probs=140.5
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|+++|.++...+.++. ....+..|+|||||+.|++...+. +..+||++++++|+.++|+......
T Consensus 198 ~~l~i~d~dG~~~~~l~~---------~~~~~~~p~wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~--- 264 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLR---------SPEPLMSPAWSPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN--- 264 (448)
T ss_pred eEEEEEeCCCCCceEeec---------CCCcccCceECCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc---
Confidence 578999999987777643 244667799999999999887654 3568999999999988887543210
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
..+ .|++|+ +++.++++|..+||++++++++.++||.+......+ .|+|||++|+|+++..+. .+|
T Consensus 265 ----~~~-----~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p-~wSpDG~~I~f~s~~~g~--~~I 332 (448)
T PRK04792 265 ----GAP-----RFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEP-SWHPDGKSLIFTSERGGK--PQI 332 (448)
T ss_pred ----CCe-----eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECCCCC--ceE
Confidence 111 345554 777777788899999999999999999865433444 599999999999876553 689
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
|.+++ .++ +.++++.... .....|||||++++++... ....+|+++++.+++ .+.++.
T Consensus 333 y~~dl--~~g----~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~-~~~lt~ 391 (448)
T PRK04792 333 YRVNL--ASG----KVSRLTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGA-MQVLTS 391 (448)
T ss_pred EEEEC--CCC----CEEEEecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCC-eEEccC
Confidence 99998 443 5667764322 3346899999999887654 334589999997776 456654
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-17 Score=153.03 Aligned_cols=199 Identities=15% Similarity=0.169 Sum_probs=129.5
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|+||++||.+++.. . |......|. +||.|+++|+||+|.+..... .....+|..+.+..++++
T Consensus 12 ~~~~iv~lhG~~~~~~---~----~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~i~~ 76 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGS---Y----WAPQLDVLT-QRFHVVTYDHRGTGRSPGELP-------PGYSIAHMADDVLQLLDA 76 (257)
T ss_pred CCCEEEEEcCCCcchh---H----HHHHHHHHH-hccEEEEEcCCCCCCCCCCCc-------ccCCHHHHHHHHHHHHHH
Confidence 4588999999766532 2 232344454 579999999999998764321 112244444444443333
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-chh------------------------hhhcc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-TFY------------------------TEKYM 461 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~------------------------~~~~~ 461 (550)
. +..++.++||||||++++.++.++|++++++|..++........ ..+ ...++
T Consensus 77 ~--~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (257)
T TIGR03611 77 L--NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWI 154 (257)
T ss_pred h--CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHh
Confidence 2 45689999999999999999999999999999887754321000 000 00000
Q ss_pred CC--C------------CCCc-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 462 GL--P------------SEDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 462 g~--~------------~~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
.. + .... ..+...+....++++++|+|+++|++|..+|++.+.++++.+ ...++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~ 230 (257)
T TIGR03611 155 SENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAAL----PNAQLK 230 (257)
T ss_pred hccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhc----CCceEE
Confidence 00 0 0000 000112223456778899999999999999999888887754 346788
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.++++||.+. .++...+.+.+.+||+
T Consensus 231 ~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 231 LLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred EECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 8999999974 4677888899999986
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-16 Score=154.57 Aligned_cols=191 Identities=18% Similarity=0.199 Sum_probs=139.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|+++|.++...++++. ....+.+++|||||+.|++.+.+. ...+||+.++.+|+.++|+......
T Consensus 176 ~~L~~~D~dG~~~~~l~~---------~~~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~g~~--- 242 (427)
T PRK02889 176 YQLQISDADGQNAQSALS---------SPEPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFKGSN--- 242 (427)
T ss_pred cEEEEECCCCCCceEecc---------CCCCcccceEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCCCCc---
Confidence 578999998877777643 234567899999999999887653 3467999999999988887533211
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
..+ .|++|+ +++.+.++|..+||.++.++++.++||.+......+ .|+|||++|+|.+++.+. .+|
T Consensus 243 ----~~~-----~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~wSpDG~~l~f~s~~~g~--~~I 310 (427)
T PRK02889 243 ----SAP-----AWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEP-FFSPDGRSIYFTSDRGGA--PQI 310 (427)
T ss_pred ----cce-----EECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCe-EEcCCCCEEEEEecCCCC--cEE
Confidence 011 355555 777777888899999999988889999865333344 499999999999876543 689
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
|.+++ +++ ..++++...+ ...+.|||||++|+++.... ...+|+++++.+++ .+.++.
T Consensus 311 y~~~~--~~g----~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g~-~~~lt~ 369 (427)
T PRK02889 311 YRMPA--SGG----AAQRVTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATGQ-VTALTD 369 (427)
T ss_pred EEEEC--CCC----ceEEEecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCCC-eEEccC
Confidence 99987 443 4566664432 34568999999999876543 33589999997776 456654
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=153.70 Aligned_cols=223 Identities=18% Similarity=0.199 Sum_probs=153.6
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
...+..+.+.+|.|.. ....+.|+||++|||.......+. ........++..|+.|+.+|||-..... |
T Consensus 58 ~~~~~~~~~~~y~p~~--~~~~~~p~vly~HGGg~~~g~~~~---~~~~~~~~~~~~g~~vv~vdYrlaPe~~--~---- 126 (312)
T COG0657 58 GPSGDGVPVRVYRPDR--KAAATAPVVLYLHGGGWVLGSLRT---HDALVARLAAAAGAVVVSVDYRLAPEHP--F---- 126 (312)
T ss_pred CCCCCceeEEEECCCC--CCCCCCcEEEEEeCCeeeecChhh---hHHHHHHHHHHcCCEEEecCCCCCCCCC--C----
Confidence 3345557899999922 122568999999998765432221 1233456677899999999999776431 1
Q ss_pred hhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCcCCccc-ccc--
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDG-YDT-- 454 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~~~~~~-~~~-- 454 (550)
...++|+.++++|+.++ ..+|+++|+|+|+|.||++++.++....+ ..++.+.++|..|... ...
T Consensus 127 -----p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~ 201 (312)
T COG0657 127 -----PAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLP 201 (312)
T ss_pred -----CchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchh
Confidence 22378999999999976 35899999999999999999998875332 4688888899887664 110
Q ss_pred ---------------hhhhhccCCCCCCccccccCChhhh--hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCe
Q 008873 455 ---------------FYTEKYMGLPSEDPVGYEYSSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 517 (550)
Q Consensus 455 ---------------~~~~~~~g~~~~~~~~~~~~~~~~~--~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 517 (550)
++...+.+....... ...+|+.. +.. -.|++|++|+.|...+ ++..+.++|++.|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~ 276 (312)
T COG0657 202 GYGEADLLDAAAILAWFADLYLGAAPDRED--PEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPV 276 (312)
T ss_pred hcCCccccCHHHHHHHHHHHhCcCccccCC--CccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeE
Confidence 111122221111110 12333322 233 4689999999999987 8999999999999999
Q ss_pred EEEEcCCCCCcCC--CCCcHHHHHHHHHHHHHH
Q 008873 518 EILIFPDERHMPR--RHRDRIYMEERIWEFIER 548 (550)
Q Consensus 518 ~~~~~p~~~H~~~--~~~~~~~~~~~~~~fl~~ 548 (550)
++..+|+..|.|. ........+..+.+|+..
T Consensus 277 ~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 277 ELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred EEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999883 322344446677777764
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=156.36 Aligned_cols=230 Identities=18% Similarity=0.240 Sum_probs=140.5
Q ss_pred CCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC
Q 008873 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 373 (550)
Q Consensus 294 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~ 373 (550)
.-...+++.|+..+ .+|++++..|... ++.|+||++-|....+. +. +..+..+++.+|++++++|.+|.
T Consensus 161 ~~~~i~~v~iP~eg-~~I~g~LhlP~~~----~p~P~VIv~gGlDs~qe--D~----~~l~~~~l~~rGiA~LtvDmPG~ 229 (411)
T PF06500_consen 161 SDYPIEEVEIPFEG-KTIPGYLHLPSGE----KPYPTVIVCGGLDSLQE--DL----YRLFRDYLAPRGIAMLTVDMPGQ 229 (411)
T ss_dssp SSSEEEEEEEEETT-CEEEEEEEESSSS----S-EEEEEEE--TTS-GG--GG----HHHHHCCCHHCT-EEEEE--TTS
T ss_pred CCCCcEEEEEeeCC-cEEEEEEEcCCCC----CCCCEEEEeCCcchhHH--HH----HHHHHHHHHhCCCEEEEEccCCC
Confidence 34557889999854 8899999999843 78899998755433221 11 12234568899999999999999
Q ss_pred CCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-
Q 008873 374 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY- 452 (550)
Q Consensus 374 g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~- 452 (550)
|.+.... ...+. -.=..++++||...++||.+||+++|.|+||+.+.++|..++++++|+|+..|+++-...
T Consensus 230 G~s~~~~---l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~ 302 (411)
T PF06500_consen 230 GESPKWP---LTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTD 302 (411)
T ss_dssp GGGTTT----S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-
T ss_pred cccccCC---CCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhcc
Confidence 8653211 11111 123468899999999999999999999999999999998778889998888775432111
Q ss_pred -------cchhh---hhccCCCCCCcc----ccccCChhh--hh--hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 453 -------DTFYT---EKYMGLPSEDPV----GYEYSSVMH--HV--HKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 453 -------~~~~~---~~~~g~~~~~~~----~~~~~~~~~--~~--~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
...+. ...+|....+.+ .....|... .+ .+.++|+|.+.|++|.++|.+.+..+.. .+
T Consensus 303 ~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s 378 (411)
T PF06500_consen 303 PEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SS 378 (411)
T ss_dssp HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TB
T ss_pred HHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cC
Confidence 11111 112233222221 123344433 12 5567899999999999999887765543 35
Q ss_pred CCeEEEEcCCCC-CcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 515 KPYEILIFPDER-HMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 515 ~~~~~~~~p~~~-H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.+-+...+|... |. ........+.+||++.|
T Consensus 379 ~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 379 TDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp TT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred CCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 555666676544 43 34566788999998764
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-16 Score=158.38 Aligned_cols=211 Identities=15% Similarity=0.090 Sum_probs=147.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||+...... ..|+++|+++++...+...
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~---------------------------------~~i~v~d~~~g~~~~~~~~------- 232 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGK---------------------------------PEIYVQDLATGQREKVASF------- 232 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCC---------------------------------cEEEEEECCCCCEEEeecC-------
Confidence 345699999999998654211 3689999999987766421
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC--cEEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG--GFIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~ 162 (550)
......++|||||+.+++..... +..+||.+++.+++.++|+..... ...+ .|++| .++|.++
T Consensus 233 --~~~~~~~~~spDg~~l~~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~---~~~~---------~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 233 --PGMNGAPAFSPDGSKLAVSLSKD-GNPDIYVMDLDGKQLTRLTNGPGI---DTEP---------SWSPDGKSIAFTSD 297 (417)
T ss_pred --CCCccceEECCCCCEEEEEECCC-CCccEEEEECCCCCEEECCCCCCC---CCCE---------EECCCCCEEEEEEC
Confidence 23344589999999888775543 345799999999988887653211 1111 23444 3778888
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
+.|..+||++++++++.++|+.+......+ .|+|||+.|+|+....+ ..+|+.+++ .+. ..+.++......
T Consensus 298 ~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~-~~spdg~~i~~~~~~~~--~~~i~~~d~--~~~----~~~~l~~~~~~~ 368 (417)
T TIGR02800 298 RGGSPQIYMMDADGGEVRRLTFRGGYNASP-SWSPDGDLIAFVHREGG--GFNIAVMDL--DGG----GERVLTDTGLDE 368 (417)
T ss_pred CCCCceEEEEECCCCCEEEeecCCCCccCe-EECCCCCEEEEEEccCC--ceEEEEEeC--CCC----CeEEccCCCCCC
Confidence 888889999999988888888543333334 49999999999987653 378999998 332 455666543345
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+.|+|||+.|++....... ..+++.+. +|+..+.++
T Consensus 369 ~p~~spdg~~l~~~~~~~~~-~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRGGR-GVLGLVST-DGRFRARLP 405 (417)
T ss_pred CceECCCCCEEEEEEeCCCc-EEEEEEEC-CCceeeECC
Confidence 56899999999988776444 57888775 565555554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=152.05 Aligned_cols=212 Identities=13% Similarity=0.087 Sum_probs=135.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|.++.+..+. ..|.||++||.+.+.. .|....+.|++++ .|+++|.||+|.+.....
T Consensus 15 ~g~~i~y~~~G---------~g~~vvllHG~~~~~~-------~w~~~~~~L~~~~-~via~D~~G~G~S~~~~~----- 72 (295)
T PRK03592 15 LGSRMAYIETG---------EGDPIVFLHGNPTSSY-------LWRNIIPHLAGLG-RCLAPDLIGMGASDKPDI----- 72 (295)
T ss_pred CCEEEEEEEeC---------CCCEEEEECCCCCCHH-------HHHHHHHHHhhCC-EEEEEcCCCCCCCCCCCC-----
Confidence 67777666442 1267888999876643 3444577787776 999999999998764311
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC---cccccc----hh---
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYDT----FY--- 456 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~---~~~~~~----~~--- 456 (550)
....++..+.+..+.+.- +.+++.++|||+||.+++.++.++|++++++|+.++... +..+.. .+
T Consensus 73 ---~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~ 147 (295)
T PRK03592 73 ---DYTFADHARYLDAWFDAL--GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQAL 147 (295)
T ss_pred ---CCCHHHHHHHHHHHHHHh--CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHH
Confidence 122444444444444332 346899999999999999999999999999999886321 111100 00
Q ss_pred h----------------hhccCC---CCCCcc---cc-----------------ccCC--------------hhhhhhcC
Q 008873 457 T----------------EKYMGL---PSEDPV---GY-----------------EYSS--------------VMHHVHKM 483 (550)
Q Consensus 457 ~----------------~~~~g~---~~~~~~---~~-----------------~~~~--------------~~~~~~~i 483 (550)
. ...+.. .....+ .+ .... ....+.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 227 (295)
T PRK03592 148 RSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATS 227 (295)
T ss_pred hCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccC
Confidence 0 000000 000000 00 0000 01224567
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++|+|+|+|++|..+++....++...+. .+.++.+++++||.+. .++.+.+.+.+.+||++.
T Consensus 228 ~~P~lii~G~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 228 DVPKLLINAEPGAILTTGAIRDWCRSWP---NQLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRL 289 (295)
T ss_pred CCCeEEEeccCCcccCcHHHHHHHHHhh---hhcceeeccCcchhhh-hcCHHHHHHHHHHHHHHh
Confidence 8999999999999996655555554432 2468889999999984 467889999999999864
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=151.93 Aligned_cols=205 Identities=12% Similarity=-0.003 Sum_probs=131.9
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|++. |.|+++|.||+|.+...-.... .......++|+.+.+..++++-
T Consensus 30 ~~vlllHG~~~~~~-------~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~-~~~~~~~~~~~a~~l~~~l~~l- 99 (294)
T PLN02824 30 PALVLVHGFGGNAD-------HWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSA-PPNSFYTFETWGEQLNDFCSDV- 99 (294)
T ss_pred CeEEEECCCCCChh-------HHHHHHHHHHhC-CeEEEEcCCCCCCCCCCccccc-cccccCCHHHHHHHHHHHHHHh-
Confidence 67899999876643 344456777766 6999999999998764211000 0001233555555555554432
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc---ccc-----------cch----------hh-------
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW---DGY-----------DTF----------YT------- 457 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~---~~~-----------~~~----------~~------- 457 (550)
..+++.|+||||||++++.++.++|++++++|+.++.... ... ... +.
T Consensus 100 -~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (294)
T PLN02824 100 -VGDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPET 178 (294)
T ss_pred -cCCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHH
Confidence 2368999999999999999999999999999998864311 000 000 00
Q ss_pred -hhc----cCCC-CCCcc----------------cccc---C----ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHH
Q 008873 458 -EKY----MGLP-SEDPV----------------GYEY---S----SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLIN 508 (550)
Q Consensus 458 -~~~----~g~~-~~~~~----------------~~~~---~----~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 508 (550)
... .+.. ..+.+ .+.. . .....+.++++|+|+++|++|..+|...+..+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~ 258 (294)
T PLN02824 179 VKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYAN 258 (294)
T ss_pred HHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHh
Confidence 000 0000 00000 0000 0 1123467789999999999999999887766433
Q ss_pred HHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 509 ALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 509 ~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.....++.+++++||.+ ..++...+.+.+.+||+++
T Consensus 259 ----~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 259 ----FDAVEDFIVLPGVGHCP-QDEAPELVNPLIESFVARH 294 (294)
T ss_pred ----cCCccceEEeCCCCCCh-hhhCHHHHHHHHHHHHhcC
Confidence 23446889999999987 5578889999999999864
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=149.70 Aligned_cols=217 Identities=13% Similarity=0.027 Sum_probs=136.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
.+...++..+.+....+ .+.|+||++||.+++.. .|....+.|++ +|.|+++|+||+|.+.....
T Consensus 9 ~~~~~~~~~~~~~~~g~-------~~~~~vv~~hG~~~~~~-------~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~ 73 (278)
T TIGR03056 9 RRVTVGPFHWHVQDMGP-------TAGPLLLLLHGTGASTH-------SWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFR 73 (278)
T ss_pred ceeeECCEEEEEEecCC-------CCCCeEEEEcCCCCCHH-------HHHHHHHHHhh-CcEEEeecCCCCCCCCCccc
Confidence 33344666666544322 12378999999766532 23334556654 69999999999997653221
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc---------c
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------Y 452 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~---------~ 452 (550)
....++++.+.+..+.++. +.+++.|+||||||.+++.++.++|++++++++.++...... .
T Consensus 74 -------~~~~~~~~~~~l~~~i~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~ 144 (278)
T TIGR03056 74 -------FRFTLPSMAEDLSALCAAE--GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYM 144 (278)
T ss_pred -------cCCCHHHHHHHHHHHHHHc--CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchh
Confidence 1123555555555555442 335789999999999999999999998888888776432100 0
Q ss_pred cch-----hh--------------hhccCC---CCC--Cccccc--------------------cCChhhhhhcCCCcEE
Q 008873 453 DTF-----YT--------------EKYMGL---PSE--DPVGYE--------------------YSSVMHHVHKMKGKLL 488 (550)
Q Consensus 453 ~~~-----~~--------------~~~~g~---~~~--~~~~~~--------------------~~~~~~~~~~i~~P~l 488 (550)
... .. ...+.. ... ....+. .......+.++++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l 224 (278)
T TIGR03056 145 ARVLACNPFTPPMMSRGAADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLH 224 (278)
T ss_pred hHhhhhcccchHHHHhhcccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEE
Confidence 000 00 000000 000 000000 0001223566789999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+++|++|..+|+.....+.+.+ ...++..+|+++|.+. .+....+.+.+.+||+
T Consensus 225 ii~g~~D~~vp~~~~~~~~~~~----~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 225 LIAGEEDKAVPPDESKRAATRV----PTATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred EEEeCCCcccCHHHHHHHHHhc----cCCeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 9999999999998877776554 3568899999999874 4667888899999874
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=153.86 Aligned_cols=197 Identities=14% Similarity=0.136 Sum_probs=127.5
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|+||++||.+.+.. .|....+.| +.||.|+++|+||+|.+.... ......++.+.+..+.+.
T Consensus 12 ~~~~li~~hg~~~~~~-------~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~--------~~~~~~~~~~~~~~~i~~ 75 (251)
T TIGR02427 12 GAPVLVFINSLGTDLR-------MWDPVLPAL-TPDFRVLRYDKRGHGLSDAPE--------GPYSIEDLADDVLALLDH 75 (251)
T ss_pred CCCeEEEEcCcccchh-------hHHHHHHHh-hcccEEEEecCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHH
Confidence 4589999999655432 233345555 468999999999998764321 122355555555555443
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch-----------------------hhhhccCC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-----------------------YTEKYMGL 463 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----------------------~~~~~~g~ 463 (550)
- +.+++.++|||+||++++.++.++|++++++++.++.........+ +...+...
T Consensus 76 ~--~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (251)
T TIGR02427 76 L--GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREA 153 (251)
T ss_pred h--CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccC
Confidence 2 4468999999999999999999999999988887754322110000 00000000
Q ss_pred CCCC------------c-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC
Q 008873 464 PSED------------P-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524 (550)
Q Consensus 464 ~~~~------------~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~ 524 (550)
.... . ..+...+....+.++++|+|+++|++|..+|.+....+.+.+ ...+++++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~ 229 (251)
T TIGR02427 154 HPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLV----PGARFAEIRG 229 (251)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhC----CCceEEEECC
Confidence 0000 0 001111223446678899999999999999998777776654 3468899999
Q ss_pred CCCcCCCCCcHHHHHHHHHHHH
Q 008873 525 ERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 525 ~~H~~~~~~~~~~~~~~~~~fl 546 (550)
++|.+. .++...+.+.+.+||
T Consensus 230 ~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 230 AGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred CCCccc-ccChHHHHHHHHHHh
Confidence 999874 356677788888886
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-15 Score=151.40 Aligned_cols=191 Identities=18% Similarity=0.163 Sum_probs=140.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|+++|.+++..++++.. ...+.+++|||||+.|++...+. ...+||++++++|+.++|+...+. .
T Consensus 179 ~~l~~~d~~g~~~~~l~~~---------~~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~---~ 245 (430)
T PRK00178 179 YTLQRSDYDGARAVTLLQS---------REPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGL---N 245 (430)
T ss_pred eEEEEECCCCCCceEEecC---------CCceeeeeECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCC---c
Confidence 4789999999888777432 34567899999999999887654 346899999999998888753321 0
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.. +.|++|+ ++|...++|..+||++++++++.++||........+ .|+|||+.|+|.+++.+. .+|
T Consensus 246 ----~~-----~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spDg~~i~f~s~~~g~--~~i 313 (430)
T PRK00178 246 ----GA-----PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEP-FWGKDGRTLYFTSDRGGK--PQI 313 (430)
T ss_pred ----CC-----eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCe-EECCCCCEEEEEECCCCC--ceE
Confidence 01 1355554 777777788899999999999999999765433344 499999999999877653 689
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
|.+++ .++ +.++++.... ...+.|||||++++++.... ....|+++++.+++ .+.++.
T Consensus 314 y~~d~--~~g----~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~-~~~lt~ 372 (430)
T PRK00178 314 YKVNV--NGG----RAERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGS-VRILTD 372 (430)
T ss_pred EEEEC--CCC----CEEEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCC-EEEccC
Confidence 99998 333 4567765432 34468999999999886543 34579999997776 466664
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-15 Score=151.80 Aligned_cols=193 Identities=18% Similarity=0.170 Sum_probs=140.1
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
..+|+++|.+++..++++. ....+..++|||||+.|++...+. ...+||++++++|+.++|+...+..
T Consensus 183 ~~~l~i~D~~g~~~~~lt~---------~~~~v~~p~wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~-- 250 (433)
T PRK04922 183 RYALQVADSDGYNPQTILR---------SAEPILSPAWSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGIN-- 250 (433)
T ss_pred eEEEEEECCCCCCceEeec---------CCCccccccCCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCc--
Confidence 3579999999888887743 234567899999999999886543 3567999999999988887543211
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
. . +.|++|+ +++...++|..+||++++++++.++||.+......+ .|+|||++|+|.+++.+. .+
T Consensus 251 -~----~-----~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~spDG~~l~f~sd~~g~--~~ 317 (433)
T PRK04922 251 -G----A-----PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAPDGKSIYFTSDRGGR--PQ 317 (433)
T ss_pred -c----C-----ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECCCCC--ce
Confidence 0 1 1345554 667777778889999999999999999764333334 599999999999887653 68
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
||.+++ .++ +.++++.... ...+.|||||++|++.... .....|+++++.+++ .+.++..
T Consensus 318 iy~~dl--~~g----~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~-~~~Lt~~ 378 (433)
T PRK04922 318 IYRVAA--SGG----SAERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGS-VRTLTPG 378 (433)
T ss_pred EEEEEC--CCC----CeEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCC-eEECCCC
Confidence 999998 443 4567775433 3456899999999988653 233489999987776 4566643
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=149.56 Aligned_cols=213 Identities=18% Similarity=0.153 Sum_probs=134.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|.+++++..... ...|.||++||.+.+.. .|....+.|.+ +|.|+++|+||+|.+...-.
T Consensus 10 ~~~~~~~~~~~~~------~~~~plvllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~----- 70 (276)
T TIGR02240 10 DGQSIRTAVRPGK------EGLTPLLIFNGIGANLE-------LVFPFIEALDP-DLEVIAFDVPGVGGSSTPRH----- 70 (276)
T ss_pred CCcEEEEEEecCC------CCCCcEEEEeCCCcchH-------HHHHHHHHhcc-CceEEEECCCCCCCCCCCCC-----
Confidence 6777877654211 12256788999655532 23334555544 79999999999998753211
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc---cc-------cc--
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---GY-------DT-- 454 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~---~~-------~~-- 454 (550)
...++++.+.+..+.+.- +.+++.|+||||||++++.++.++|++++++|+.++..... .. ..
T Consensus 71 ---~~~~~~~~~~~~~~i~~l--~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (276)
T TIGR02240 71 ---PYRFPGLAKLAARMLDYL--DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPR 145 (276)
T ss_pred ---cCcHHHHHHHHHHHHHHh--CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCch
Confidence 112333333333333321 34679999999999999999999999999999988754211 00 00
Q ss_pred hhh---------hhccCCCC-CCcc---c-------------cc------cCChhhhhhcCCCcEEEEecCCCCCCChHH
Q 008873 455 FYT---------EKYMGLPS-EDPV---G-------------YE------YSSVMHHVHKMKGKLLLVHGMIDENVHFRH 502 (550)
Q Consensus 455 ~~~---------~~~~g~~~-~~~~---~-------------~~------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 502 (550)
.+. ..+.+... .+++ . +. .......+.++++|+|+++|+.|..+|+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~ 225 (276)
T TIGR02240 146 RYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLIN 225 (276)
T ss_pred hhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHH
Confidence 000 00000000 0000 0 00 011123467889999999999999999998
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 503 TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 503 ~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+.++.+.+ ...++.++++ +|.+ ..+....+.+.+.+|+++.
T Consensus 226 ~~~l~~~~----~~~~~~~i~~-gH~~-~~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 226 MRLLAWRI----PNAELHIIDD-GHLF-LITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred HHHHHHhC----CCCEEEEEcC-CCch-hhccHHHHHHHHHHHHHHh
Confidence 88887655 3457777875 9987 4467788999999999863
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=148.21 Aligned_cols=198 Identities=15% Similarity=0.092 Sum_probs=126.1
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 409 (550)
.||++||.+.+.. .|......|++.||.|+++|+||+|.+..... ....++++.+.+..+.+. +
T Consensus 5 ~vvllHG~~~~~~-------~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~--l 68 (255)
T PLN02965 5 HFVFVHGASHGAW-------CWYKLATLLDAAGFKSTCVDLTGAGISLTDSN-------TVSSSDQYNRPLFALLSD--L 68 (255)
T ss_pred EEEEECCCCCCcC-------cHHHHHHHHhhCCceEEEecCCcCCCCCCCcc-------ccCCHHHHHHHHHHHHHh--c
Confidence 4889999766543 34556778888899999999999997753211 012234444333333332 1
Q ss_pred CC-CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC--Cccc-ccc----------hhh----h-------------
Q 008873 410 KV-GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT--SWDG-YDT----------FYT----E------------- 458 (550)
Q Consensus 410 d~-~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~--~~~~-~~~----------~~~----~------------- 458 (550)
+. .++.++||||||.+++.++.++|++++.+|..++.. .... ... .+. .
T Consensus 69 ~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (255)
T PLN02965 69 PPDHKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKP 148 (255)
T ss_pred CCCCCEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCH
Confidence 22 489999999999999999999999999998877541 1000 000 000 0
Q ss_pred ----h-ccCC-CCCC---------ccccccC-Ch---hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEE
Q 008873 459 ----K-YMGL-PSED---------PVGYEYS-SV---MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 519 (550)
Q Consensus 459 ----~-~~g~-~~~~---------~~~~~~~-~~---~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 519 (550)
. +... +.+. ....... .. .....++++|+|+++|++|..+|+..+..+.+.+ ...++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~----~~a~~ 224 (255)
T PLN02965 149 EFVRHYYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENW----PPAQT 224 (255)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhC----CcceE
Confidence 0 0000 0000 0000000 00 0123358899999999999999998887777654 34688
Q ss_pred EEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 520 LIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 520 ~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++++++||.+ ..++.+.+.+.+.+|++.
T Consensus 225 ~~i~~~GH~~-~~e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 225 YVLEDSDHSA-FFSVPTTLFQYLLQAVSS 252 (255)
T ss_pred EEecCCCCch-hhcCHHHHHHHHHHHHHH
Confidence 9999999998 457788888888888764
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=148.58 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=124.8
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
...|.||++||.++... .|......|+ .+|.|+++|.||+|.+...... ...+ ..+|+.+.++++
T Consensus 14 ~~~~~iv~lhG~~~~~~-------~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~~~~-~~~~----~~~d~~~~l~~l-- 78 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLD-------NLGVLARDLV-NDHDIIQVDMRNHGLSPRDPVM-NYPA----MAQDLLDTLDAL-- 78 (255)
T ss_pred CCCCCEEEECCCCCchh-------HHHHHHHHHh-hCCeEEEECCCCCCCCCCCCCC-CHHH----HHHHHHHHHHHc--
Confidence 34588999999766542 2333445554 5799999999999877532110 0011 134555555443
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc-CCcc--cccchhh--------------------hhccC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV-TSWD--GYDTFYT--------------------EKYMG 462 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~-~~~~--~~~~~~~--------------------~~~~g 462 (550)
..+++.|+||||||.+++.++.++|++++++++.++. ..+. .....+. ...+.
T Consensus 79 ----~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (255)
T PRK10673 79 ----QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLN 154 (255)
T ss_pred ----CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcC
Confidence 3457999999999999999999999999998886431 1110 0000000 00000
Q ss_pred C---------CCCCc----------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcC
Q 008873 463 L---------PSEDP----------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 523 (550)
Q Consensus 463 ~---------~~~~~----------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p 523 (550)
. ..... ..+..........++++|+|+++|++|..++.+....+.+.+ .+.++.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~ 230 (255)
T PRK10673 155 EEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQF----PQARAHVIA 230 (255)
T ss_pred CHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhC----CCcEEEEeC
Confidence 0 00000 000000111123456789999999999999987666665543 467889999
Q ss_pred CCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 524 DERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 524 ~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+++|.+ ..+....+.+.+.+||+++
T Consensus 231 ~~gH~~-~~~~p~~~~~~l~~fl~~~ 255 (255)
T PRK10673 231 GAGHWV-HAEKPDAVLRAIRRYLNDK 255 (255)
T ss_pred CCCCee-eccCHHHHHHHHHHHHhcC
Confidence 999977 4566788899999999763
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=155.02 Aligned_cols=246 Identities=16% Similarity=0.142 Sum_probs=156.7
Q ss_pred CCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccc--cchhHhHHHHhCCcEEEEECCC
Q 008873 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDMRAQYLRSKGILVWKLDNR 371 (550)
Q Consensus 294 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~~~~~l~~~G~~vv~~d~r 371 (550)
.-.+.|+..+++.||..|....+.+.....+..+.|+|+++||...+.. .|.. ....++..|+++||.|+++|.|
T Consensus 40 ~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~---~w~~~~~~~sla~~La~~GydV~l~n~R 116 (395)
T PLN02872 40 AGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGD---AWFLNSPEQSLGFILADHGFDVWVGNVR 116 (395)
T ss_pred cCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCccccccc---ceeecCcccchHHHHHhCCCCccccccc
Confidence 3457799999999999998887754332112234578999999755433 2311 1123456788999999999999
Q ss_pred CCCCC-chhhHHHHh-----hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC---eeEEEEE
Q 008873 372 GTARR-GLKFEASIK-----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVS 442 (550)
Q Consensus 372 G~g~~-~~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~---~~~~~v~ 442 (550)
|++.+ +........ -.+......|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++
T Consensus 117 G~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~ 192 (395)
T PLN02872 117 GTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAAL 192 (395)
T ss_pred ccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHH
Confidence 97643 211000000 0111112469999999997653 36899999999999998665 4665 4666677
Q ss_pred cCCcCCcccc---------------------------cc-hhh---h--------------hccCC--------------
Q 008873 443 GAPVTSWDGY---------------------------DT-FYT---E--------------KYMGL-------------- 463 (550)
Q Consensus 443 ~~~~~~~~~~---------------------------~~-~~~---~--------------~~~g~-------------- 463 (550)
.+|+..+... .. ... . .+.|.
T Consensus 193 l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~ 272 (395)
T PLN02872 193 LCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLE 272 (395)
T ss_pred hcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHh
Confidence 7765321100 00 000 0 00010
Q ss_pred --CC---------------------------CCcccccc-CChhhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHH
Q 008873 464 --PS---------------------------EDPVGYEY-SSVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALV 511 (550)
Q Consensus 464 --~~---------------------------~~~~~~~~-~~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~ 511 (550)
|. .+...|.. ..|...++++ ++|+++++|++|..+++....++.+.+.
T Consensus 273 ~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp 352 (395)
T PLN02872 273 YEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELP 352 (395)
T ss_pred cCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCC
Confidence 00 01111211 1234456777 4799999999999999998888887763
Q ss_pred HcCCCeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHHh
Q 008873 512 AARKPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 512 ~~~~~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~~ 549 (550)
...++..+++.+|. +...+..+.+++.+++||+++
T Consensus 353 ---~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 353 ---SKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred ---CccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 23578889999996 446677888999999999875
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.9e-16 Score=128.20 Aligned_cols=201 Identities=21% Similarity=0.333 Sum_probs=140.2
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
..+.+...-|. +.+. +.|... ...|+.|.+|--|.... .+........+..|.++||+++.+|+||.|++..
T Consensus 5 ~~v~i~Gp~G~-le~~-~~~~~~----~~~~iAli~HPHPl~gG--tm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G 76 (210)
T COG2945 5 PTVIINGPAGR-LEGR-YEPAKT----PAAPIALICHPHPLFGG--TMNNKVVQTLARALVKRGFATLRFNFRGVGRSQG 76 (210)
T ss_pred CcEEecCCccc-ceec-cCCCCC----CCCceEEecCCCccccC--ccCCHHHHHHHHHHHhCCceEEeecccccccccC
Confidence 44566655553 4444 334332 45689999987544322 1111122234667889999999999999998876
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhh
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE 458 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 458 (550)
+|. .|..+.+|..++++|+.++.. +..-..+.|+|+|+++++.++.+.|+. ...++.+|... .++
T Consensus 77 ~fD------~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~--~~d----- 141 (210)
T COG2945 77 EFD------NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPIN--AYD----- 141 (210)
T ss_pred ccc------CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCC--chh-----
Confidence 654 456679999999999998742 333457899999999999999987764 44555555433 011
Q ss_pred hccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHH
Q 008873 459 KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538 (550)
Q Consensus 459 ~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~ 538 (550)
...+.....|.++|+|+.|+.+.+....+..+ +.+.++++.++++|.|.. ....+
T Consensus 142 ------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~-----~~~~~~i~i~~a~HFF~g--Kl~~l 196 (210)
T COG2945 142 ------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQE-----SIKITVITIPGADHFFHG--KLIEL 196 (210)
T ss_pred ------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhc-----CCCCceEEecCCCceecc--cHHHH
Confidence 12233445799999999999999887777654 467889999999999843 55677
Q ss_pred HHHHHHHHH
Q 008873 539 EERIWEFIE 547 (550)
Q Consensus 539 ~~~~~~fl~ 547 (550)
.+.+.+||.
T Consensus 197 ~~~i~~~l~ 205 (210)
T COG2945 197 RDTIADFLE 205 (210)
T ss_pred HHHHHHHhh
Confidence 888899983
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-16 Score=148.30 Aligned_cols=201 Identities=15% Similarity=0.194 Sum_probs=125.8
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.||++||++++.. . .+......+.+.||.|+++|.||+|.+....... ....+++..+.+..+.++-
T Consensus 25 ~~~vl~~hG~~g~~~--~----~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 93 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH--E----YLENLRELLKEEGREVIMYDQLGCGYSDQPDDSD-----ELWTIDYFVDELEEVREKL 93 (288)
T ss_pred CCeEEEEcCCCCccH--H----HHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCccc-----ccccHHHHHHHHHHHHHHc
Confidence 367888999876642 1 1233455566669999999999998764321100 0123455555555555442
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-----------cchhh---h---------------
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-----------DTFYT---E--------------- 458 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-----------~~~~~---~--------------- 458 (550)
+.+++.++||||||.+++.++..+|++++++++.+++...... ..... .
T Consensus 94 --~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (288)
T TIGR01250 94 --GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQE 171 (288)
T ss_pred --CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHH
Confidence 3457999999999999999999999999999987765321100 00000 0
Q ss_pred ---hcc----CCCCC------------Ccc---------------ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHH
Q 008873 459 ---KYM----GLPSE------------DPV---------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 504 (550)
Q Consensus 459 ---~~~----g~~~~------------~~~---------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 504 (550)
.+. ..... ... .+........+.++++|+|+++|+.|. +++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~-~~~~~~~ 250 (288)
T TIGR01250 172 AVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDT-MTPEAAR 250 (288)
T ss_pred HHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCc-cCHHHHH
Confidence 000 00000 000 000112234567788999999999997 4666666
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 505 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+.+.+ ...+++++++++|.+.. +....+.+.+.+||+
T Consensus 251 ~~~~~~----~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 251 EMQELI----AGSRLVVFPDGSHMTMI-EDPEVYFKLLSDFIR 288 (288)
T ss_pred HHHHhc----cCCeEEEeCCCCCCccc-CCHHHHHHHHHHHhC
Confidence 555443 35678899999998744 577888888888874
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=142.85 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=86.8
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcC-CC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM-KG 485 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i-~~ 485 (550)
..++++||++.|+|+||.+++.++.++|..+.++++.+|....... ........ ++
T Consensus 100 ~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~-----------------------~~~~~~~~~~~ 156 (216)
T PF02230_consen 100 YGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE-----------------------LEDRPEALAKT 156 (216)
T ss_dssp TT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC-----------------------CHCCHCCCCTS
T ss_pred cCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc-----------------------ccccccccCCC
Confidence 3489999999999999999999999999999999999875431100 00011111 57
Q ss_pred cEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 486 KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 486 P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
|++++||..|+++|.+.+.+..+.|++.+.++++..|++.+|.+. .+.++.+.+||++++
T Consensus 157 pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 157 PILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp -EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred cEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999999999883 356788999999875
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-16 Score=138.40 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=122.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH-HhhccC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS-IKHNCG 389 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~-~~~~~~ 389 (550)
|.+.+|.|+... ..+.|+||++||..+... .+... ..+.++..++||+|+.|+.........-|... .....+
T Consensus 1 l~Y~lYvP~~~~--~~~~PLVv~LHG~~~~a~---~~~~~-s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g 74 (220)
T PF10503_consen 1 LSYRLYVPPGAP--RGPVPLVVVLHGCGQSAE---DFAAG-SGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRG 74 (220)
T ss_pred CcEEEecCCCCC--CCCCCEEEEeCCCCCCHH---HHHhh-cCHHHHhhcCCeEEEcccccccCCCCCcccccccccccC
Confidence 457899998753 247899999999766532 12111 11234444689999999965332222222111 112234
Q ss_pred CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc--chhhhhccCCCCCC
Q 008873 390 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD--TFYTEKYMGLPSED 467 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~g~~~~~ 467 (550)
..+...+.+.++++.++..||++||.+.|+|.||+|+..++..+|++|+++..++++..-.... ........+.. ..
T Consensus 75 ~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~~m~~g~~-~~ 153 (220)
T PF10503_consen 75 GGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALSAMRSGPR-PA 153 (220)
T ss_pred ccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHHHhhCCCC-CC
Confidence 4466677888999999999999999999999999999999999999999999888763211100 00111111111 11
Q ss_pred ccccccCChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHc
Q 008873 468 PVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAA 513 (550)
Q Consensus 468 ~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 513 (550)
+..... ........ ..|++|+||+.|..|.+.++.++.+++...
T Consensus 154 p~~~~~--a~~~~g~~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 154 PAAAWG--ARSDAGAYPGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred hHHHHH--hhhhccCCCCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 111000 00001111 249999999999999999999999887654
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=150.28 Aligned_cols=218 Identities=11% Similarity=0.075 Sum_probs=133.2
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccC
Q 008873 310 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 389 (550)
Q Consensus 310 ~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~ 389 (550)
++++...-+.+.. ...|.||++||.+.+.. .|......|++ +|.|+++|+||+|.+..... .
T Consensus 73 ~i~Y~~~G~g~~~---~~gp~lvllHG~~~~~~-------~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~-------~ 134 (360)
T PLN02679 73 SINYLVKGSPEVT---SSGPPVLLVHGFGASIP-------HWRRNIGVLAK-NYTVYAIDLLGFGASDKPPG-------F 134 (360)
T ss_pred eEEEEEecCcccC---CCCCeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEECCCCCCCCCCCCC-------c
Confidence 6666655432110 12367899999766532 33444566655 79999999999998753211 0
Q ss_pred CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh-hCCCeeEEEEEcCCcCCccc---ccc-----------
Q 008873 390 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA-RFPDVFQCAVSGAPVTSWDG---YDT----------- 454 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~-~~~~~~~~~v~~~~~~~~~~---~~~----------- 454 (550)
....++..+.+..+.+. +..+++.|+||||||.+++.++. .+|++++++|+.++...... ...
T Consensus 135 ~~~~~~~a~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (360)
T PLN02679 135 SYTMETWAELILDFLEE--VVQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLW 212 (360)
T ss_pred cccHHHHHHHHHHHHHH--hcCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHH
Confidence 11233333333333222 13468999999999999988876 46999999998876431100 000
Q ss_pred --------------hhh----hh----c----cCCCCC--------------C---ccccc-------cCChhhhhhcCC
Q 008873 455 --------------FYT----EK----Y----MGLPSE--------------D---PVGYE-------YSSVMHHVHKMK 484 (550)
Q Consensus 455 --------------~~~----~~----~----~g~~~~--------------~---~~~~~-------~~~~~~~~~~i~ 484 (550)
.+. .. . ...+.. . ...+. ..+....+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 292 (360)
T PLN02679 213 LIDFLLKQRGIASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRIS 292 (360)
T ss_pred HHHHHhhchhhHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcC
Confidence 000 00 0 000000 0 00000 011223466788
Q ss_pred CcEEEEecCCCCCCChHHH-HHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHT-ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+|+|+++|++|..+|+... .++++.+.+.-.+.++.++|++||.+ ..+..+.+.+.+.+||++
T Consensus 293 ~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 293 LPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 9999999999999998743 23445555544678999999999987 557788999999999975
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-15 Score=147.66 Aligned_cols=184 Identities=18% Similarity=0.198 Sum_probs=133.5
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|+++|.++...+.++- ....+..|+|||||+.|++...+. +..+||+.++++|+.+.++......
T Consensus 184 ~~i~i~d~dg~~~~~lt~---------~~~~v~~p~wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~--- 250 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNR---------SSQPLMSPAWSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN--- 250 (429)
T ss_pred EEEEEECCCCCCceEecc---------CCCccccceEcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc---
Confidence 578999999887666632 244567899999999999887543 3467999999999888876533210
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.. +.|++|+ +++.+.++|..+||++++++++.++||.+...+..+ .|+|||++|+|.+++.+. .+|
T Consensus 251 ----~~-----~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~wSpDG~~i~f~s~~~g~--~~I 318 (429)
T PRK01742 251 ----GA-----PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEP-SWSPDGQSILFTSDRSGS--PQV 318 (429)
T ss_pred ----Cc-----eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCE-EECCCCCEEEEEECCCCC--ceE
Confidence 01 1356655 666677788889999999998899999876555555 499999999999886653 699
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
|.++. .+. ..++++.. + ..+.|||||++|++... ..++++|+.+|+. +.++
T Consensus 319 ~~~~~--~~~----~~~~l~~~-~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~-~~lt 369 (429)
T PRK01742 319 YRMSA--SGG----GASLVGGR-G-YSAQISADGKTLVMING-----DNVVKQDLTSGST-EVLS 369 (429)
T ss_pred EEEEC--CCC----CeEEecCC-C-CCccCCCCCCEEEEEcC-----CCEEEEECCCCCe-EEec
Confidence 99987 443 33455432 3 45679999999988754 3678889877763 4444
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.8e-16 Score=139.90 Aligned_cols=235 Identities=14% Similarity=0.128 Sum_probs=147.8
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+...+...||..+...+..++.. .+.|+||.+||-.++.. + +-...+...+.++||.||++|.||+++.
T Consensus 48 ~~~re~v~~pdg~~~~ldw~~~p~~----~~~P~vVl~HGL~G~s~--s---~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~ 118 (345)
T COG0429 48 AYTRERLETPDGGFIDLDWSEDPRA----AKKPLVVLFHGLEGSSN--S---PYARGLMRALSRRGWLVVVFHFRGCSGE 118 (345)
T ss_pred ccceEEEEcCCCCEEEEeeccCccc----cCCceEEEEeccCCCCc--C---HHHHHHHHHHHhcCCeEEEEecccccCC
Confidence 3445566777776555555543222 46699999999555432 1 1123346677889999999999999876
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhH-HHHHHHHhhCCC-eeEEEEEcCCcCCc-----
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG-YLSAITLARFPD-VFQCAVSGAPVTSW----- 449 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG-~~a~~~~~~~~~-~~~~~v~~~~~~~~----- 449 (550)
... ...-+.....+|+..+++++.++. -+.++.++|.|+|| +++.+++-+..+ ...|+++++-..|+
T Consensus 119 ~n~----~p~~yh~G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~ 192 (345)
T COG0429 119 ANT----SPRLYHSGETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAY 192 (345)
T ss_pred ccc----CcceecccchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHH
Confidence 431 111222334699999999999864 35789999999999 555555543222 23444444332222
Q ss_pred ------c--cccch---hhh-------------------------------------hccCCCCCCccccccCChhhhhh
Q 008873 450 ------D--GYDTF---YTE-------------------------------------KYMGLPSEDPVGYEYSSVMHHVH 481 (550)
Q Consensus 450 ------~--~~~~~---~~~-------------------------------------~~~g~~~~~~~~~~~~~~~~~~~ 481 (550)
. .|... +.+ ..+|. .+..+.|+..|.+..+.
T Consensus 193 ~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf-~da~dYYr~aSs~~~L~ 271 (345)
T COG0429 193 RLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGF-ADAEDYYRQASSLPLLP 271 (345)
T ss_pred HhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCC-CcHHHHHHhcccccccc
Confidence 1 11000 000 00011 11235677889999999
Q ss_pred cCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc-C-CCCC-cH-HHHHHHHHHHHHHhC
Q 008873 482 KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM-P-RRHR-DR-IYMEERIWEFIERTL 550 (550)
Q Consensus 482 ~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~-~-~~~~-~~-~~~~~~~~~fl~~~l 550 (550)
+|++|+||||+.+|+.++++.--..... .+..+.+.+.+.+||. + .... +. ....+++.+||+..+
T Consensus 272 ~Ir~PtLii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 272 KIRKPTLIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred ccccceEEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 9999999999999999987543333221 4678999999999995 2 2122 22 256788999998653
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=150.67 Aligned_cols=224 Identities=12% Similarity=0.117 Sum_probs=141.6
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH---hCCcEEEEECCCCCCCCch
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR---SKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~---~~G~~vv~~d~rG~g~~~~ 378 (550)
.+.+..+.++++....|.+. ...|.||++||.+.+.. .|.. .....|+ +.+|.|+++|+||+|.+..
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~----~~k~~VVLlHG~~~s~~---~W~~---~~~~~L~~~~~~~yrVia~Dl~G~G~S~~ 248 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDN----KAKEDVLFIHGFISSSA---FWTE---TLFPNFSDAAKSTYRLFAVDLLGFGRSPK 248 (481)
T ss_pred eeEeeCCeEEEEEEecCCCC----CCCCeEEEECCCCccHH---HHHH---HHHHHHHHHhhCCCEEEEECCCCCCCCcC
Confidence 44444567898888888753 22367899999866542 2321 1123333 4799999999999998753
Q ss_pred hhHHHHhhccCCCchHHHHHHH-HHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-----
Q 008873 379 KFEASIKHNCGRIDAEDQLTGA-EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----- 452 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~----- 452 (550)
... ....+++..+.+ ..+.+.- +.+++.++||||||++++.++.++|++++++++.++.......
T Consensus 249 p~~-------~~ytl~~~a~~l~~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~ 319 (481)
T PLN03087 249 PAD-------SLYTLREHLEMIERSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQAT 319 (481)
T ss_pred CCC-------CcCCHHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHH
Confidence 211 112345555554 2344432 3468999999999999999999999999999998764321000
Q ss_pred -------------c---------chhhh--hcc-----------------CCCCCCccccc----cC--Ch---------
Q 008873 453 -------------D---------TFYTE--KYM-----------------GLPSEDPVGYE----YS--SV--------- 476 (550)
Q Consensus 453 -------------~---------~~~~~--~~~-----------------g~~~~~~~~~~----~~--~~--------- 476 (550)
. .++.. +.. -.+......+. .. ..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 399 (481)
T PLN03087 320 QYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNII 399 (481)
T ss_pred HHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHH
Confidence 0 00000 000 00000000000 00 00
Q ss_pred ----------h-hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHH
Q 008873 477 ----------M-HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 545 (550)
Q Consensus 477 ----------~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~f 545 (550)
+ ...+++++|+|+++|++|..+|++.+..+.+.+ .+.+++++|++||.....+....+.+.+.+|
T Consensus 400 ~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~i----P~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F 475 (481)
T PLN03087 400 CGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKV----PRARVKVIDDKDHITIVVGRQKEFARELEEI 475 (481)
T ss_pred hchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhC----CCCEEEEeCCCCCcchhhcCHHHHHHHHHHH
Confidence 0 111268899999999999999999888886665 4578999999999864446678888888888
Q ss_pred HHH
Q 008873 546 IER 548 (550)
Q Consensus 546 l~~ 548 (550)
++.
T Consensus 476 ~~~ 478 (481)
T PLN03087 476 WRR 478 (481)
T ss_pred hhc
Confidence 764
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=146.83 Aligned_cols=219 Identities=15% Similarity=0.119 Sum_probs=134.9
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 380 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~ 380 (550)
..+...+|..+++..+.++ +.+.||++||++++... ......+...+|.|+++|+||+|.+....
T Consensus 7 ~~~~~~~~~~l~y~~~g~~-------~~~~lvllHG~~~~~~~--------~~~~~~~~~~~~~vi~~D~~G~G~S~~~~ 71 (306)
T TIGR01249 7 GYLNVSDNHQLYYEQSGNP-------DGKPVVFLHGGPGSGTD--------PGCRRFFDPETYRIVLFDQRGCGKSTPHA 71 (306)
T ss_pred CeEEcCCCcEEEEEECcCC-------CCCEEEEECCCCCCCCC--------HHHHhccCccCCEEEEECCCCCCCCCCCC
Confidence 3555667888877654321 12457889998765321 11233445678999999999999775321
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc----------
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---------- 450 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~---------- 450 (550)
. .......|+.+.+..+.++- +.+++.++||||||++++.++.++|++++++|+.++.....
T Consensus 72 ~------~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 143 (306)
T TIGR01249 72 C------LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGG 143 (306)
T ss_pred C------cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcc
Confidence 0 01123456666666665542 34689999999999999999999999988888776532100
Q ss_pred ---cccchhh--------------------hhccCCCC-------------CC-------cccc------------cc--
Q 008873 451 ---GYDTFYT--------------------EKYMGLPS-------------ED-------PVGY------------EY-- 473 (550)
Q Consensus 451 ---~~~~~~~--------------------~~~~g~~~-------------~~-------~~~~------------~~-- 473 (550)
.+...+. ..+..... .. ...+ ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (306)
T TIGR01249 144 ASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLE 223 (306)
T ss_pred hhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHH
Confidence 0000000 00000000 00 0000 00
Q ss_pred ---------C----ChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHH
Q 008873 474 ---------S----SVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYME 539 (550)
Q Consensus 474 ---------~----~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~ 539 (550)
. +....+.++ ++|+|++||++|..+|+..+.++++++ ...++++++++||....++ ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~----~~~~~~~~~~~gH~~~~~~----~~ 295 (306)
T TIGR01249 224 NHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAF----PEAELKVTNNAGHSAFDPN----NL 295 (306)
T ss_pred HhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhC----CCCEEEEECCCCCCCCChH----HH
Confidence 0 011234566 589999999999999999888887765 3578999999999975433 45
Q ss_pred HHHHHHHHHhC
Q 008873 540 ERIWEFIERTL 550 (550)
Q Consensus 540 ~~~~~fl~~~l 550 (550)
+.+.+|+..+|
T Consensus 296 ~~i~~~~~~~~ 306 (306)
T TIGR01249 296 AALVHALETYL 306 (306)
T ss_pred HHHHHHHHHhC
Confidence 67777777654
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=139.45 Aligned_cols=225 Identities=16% Similarity=0.116 Sum_probs=154.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHH-HhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l-~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
....+..++|+|..... ..+.|+|||+|||+.... ......++.+...+ .+.+..||++|||-....-
T Consensus 70 ~~~~l~vRly~P~~~~~-~~~~p~lvyfHGGGf~~~--S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~-------- 138 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSSS-ETKLPVLVYFHGGGFCLG--SANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHP-------- 138 (336)
T ss_pred CCCCeEEEEEcCCCCCc-ccCceEEEEEeCCccEeC--CCCCchhHHHHHHHHHHcCeEEEecCcccCCCCC--------
Confidence 34558899999987632 268899999999876533 11122344445555 5789999999999765321
Q ss_pred hccCCCchHHHHHHHHHHHHc----CCCCCCceEEEEechhHHHHHHHHhhC------CCeeEEEEEcCCcCCcccccc-
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQ----GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDGYDT- 454 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~i~G~S~GG~~a~~~~~~~------~~~~~~~v~~~~~~~~~~~~~- 454 (550)
-...++|..+|+.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.|++.|+..-.....
T Consensus 139 ---~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~ 215 (336)
T KOG1515|consen 139 ---FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTES 215 (336)
T ss_pred ---CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCH
Confidence 123489999999999885 568999999999999999999887652 356899999999865322110
Q ss_pred -------------------hhhhhccCCCCCCccccccCChhh-----hhhcCC-CcEEEEecCCCCCCChHHHHHHHHH
Q 008873 455 -------------------FYTEKYMGLPSEDPVGYEYSSVMH-----HVHKMK-GKLLLVHGMIDENVHFRHTARLINA 509 (550)
Q Consensus 455 -------------------~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~ 509 (550)
+|. ..+.....+. .-...+|.. ...... .|+|++.++.|... .++..+.++
T Consensus 216 e~~~~~~~~~~~~~~~~~~~w~-~~lP~~~~~~-~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~ 291 (336)
T KOG1515|consen 216 EKQQNLNGSPELARPKIDKWWR-LLLPNGKTDL-DHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEK 291 (336)
T ss_pred HHHHhhcCCcchhHHHHHHHHH-HhCCCCCCCc-CCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHH
Confidence 111 1111000000 000111211 111222 47999999999865 688999999
Q ss_pred HHHcCCCeEEEEcCCCCCcCC--CC--CcHHHHHHHHHHHHHHh
Q 008873 510 LVAARKPYEILIFPDERHMPR--RH--RDRIYMEERIWEFIERT 549 (550)
Q Consensus 510 l~~~~~~~~~~~~p~~~H~~~--~~--~~~~~~~~~~~~fl~~~ 549 (550)
|++.|+++++..++++.|++. .+ .......+++.+|+.+.
T Consensus 292 Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 292 LKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 999999999999999999862 22 36677888999998764
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-17 Score=150.31 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=116.1
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCce-----------eecccccccchhHhHHHHhCCcEE
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ-----------LVCDSWINTVDMRAQYLRSKGILV 365 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~-----------~~~~~~~~~~~~~~~~l~~~G~~v 365 (550)
..|.+.|....+..++++++.|++.+ ++.|+||.+||-.+.. .+.+.+...-..++..|+++||+|
T Consensus 87 ~~EKv~f~~~p~~~vpaylLvPd~~~---~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVv 163 (390)
T PF12715_consen 87 TREKVEFNTTPGSRVPAYLLVPDGAK---GPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVV 163 (390)
T ss_dssp EEEEEEE--STTB-EEEEEEEETT-----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEE
T ss_pred EEEEEEEEccCCeeEEEEEEecCCCC---CCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEE
Confidence 45888898889999999999999853 7899999999932221 111112211223577899999999
Q ss_pred EEECCCCCCCCchhh---------HHHH---hhccCC----CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHH
Q 008873 366 WKLDNRGTARRGLKF---------EASI---KHNCGR----IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 429 (550)
Q Consensus 366 v~~d~rG~g~~~~~~---------~~~~---~~~~~~----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~ 429 (550)
+++|.+|.|..++.- ...+ ...+|. ...-|.+.+++||..++.||++||+++|+||||+.++++
T Consensus 164 la~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~L 243 (390)
T PF12715_consen 164 LAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWL 243 (390)
T ss_dssp EEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHH
T ss_pred EEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHH
Confidence 999999988765411 0111 111222 235567789999999999999999999999999999999
Q ss_pred HhhCCCeeEEEEEcCCcCCccc---ccchhhhhcc-CCCC----CCccccccCChhhhhhcCC--CcEEEEecCCCCCCC
Q 008873 430 LARFPDVFQCAVSGAPVTSWDG---YDTFYTEKYM-GLPS----EDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVH 499 (550)
Q Consensus 430 ~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~-g~~~----~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~ 499 (550)
++.. ++++++|+.+-+.-+.. .......+.. +.+. --+..++..+ ..++..+- .|+|++.|+.|..+|
T Consensus 244 aALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D-~PdIasliAPRPll~~nG~~Dklf~ 321 (390)
T PF12715_consen 244 AALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFD-FPDIASLIAPRPLLFENGGKDKLFP 321 (390)
T ss_dssp HHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC---HHHHHHTTTTS-EEESS-B-HHHHH
T ss_pred HHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCc-cHHHHHHhCCCcchhhcCCcccccH
Confidence 9974 56677776553322110 0000000000 1111 0112222222 22333332 599999999998765
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEcCC
Q 008873 500 FRHTARLINALVAARKPYEILIFPD 524 (550)
Q Consensus 500 ~~~~~~~~~~l~~~~~~~~~~~~p~ 524 (550)
. ....|+.. .+.-++++..||.
T Consensus 322 i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 322 I--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp H--HHHHHHHT-T-GGGEEE---GG
T ss_pred H--HHHHHHhc-CCCcceEEeeccc
Confidence 4 23333332 2234778888886
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=141.20 Aligned_cols=197 Identities=15% Similarity=0.160 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHH-HHHHHHcC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQG 407 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~ 407 (550)
|+||++||.+++.. .|......|+ +||.|+++|.||+|.+.... .......+++... +..+.++-
T Consensus 2 ~~vv~~hG~~~~~~-------~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~------~~~~~~~~~~~~~~~~~~~~~~ 67 (251)
T TIGR03695 2 PVLVFLHGFLGSGA-------DWQALIELLG-PHFRCLAIDLPGHGSSQSPD------EIERYDFEEAAQDILATLLDQL 67 (251)
T ss_pred CEEEEEcCCCCchh-------hHHHHHHHhc-ccCeEEEEcCCCCCCCCCCC------ccChhhHHHHHHHHHHHHHHHc
Confidence 67899999766543 2344567776 89999999999998775321 1111224444444 44444432
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc---------------------hhhhhccC----
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT---------------------FYTEKYMG---- 462 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~g---- 462 (550)
+.+++.++|||+||.+++.++.++|+.++++++.++...+..... .+...+..
T Consensus 68 --~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (251)
T TIGR03695 68 --GIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLF 145 (251)
T ss_pred --CCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCcee
Confidence 457899999999999999999999999999998876543211000 00000000
Q ss_pred -----CCCCCcc----------------cc------ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 463 -----LPSEDPV----------------GY------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 463 -----~~~~~~~----------------~~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
.+..... .+ ...+....+.++++|+|+++|+.|..++ .. .+.+.+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~ 220 (251)
T TIGR03695 146 ASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLP 220 (251)
T ss_pred eecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCC
Confidence 0000000 00 0012223456788999999999997653 22 233444445
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+.++.++|+++|.+. .++...+.+.+.+||+
T Consensus 221 ~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 221 NLTLVIIANAGHNIH-LENPEAFAKILLAFLE 251 (251)
T ss_pred CCcEEEEcCCCCCcC-ccChHHHHHHHHHHhC
Confidence 778999999999873 3556778888888873
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-15 Score=146.89 Aligned_cols=204 Identities=19% Similarity=0.175 Sum_probs=124.1
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchH-HHHHHH-HHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAE-DQLTGA-EWLI 404 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~-D~~~~~-~~l~ 404 (550)
..|+||++||.+.... .| ......|++ +|.|+++|+||+|.+...... ... ..... .+.+.+ +++.
T Consensus 104 ~~p~vvllHG~~~~~~---~~----~~~~~~L~~-~~~vi~~D~rG~G~S~~~~~~--~~~--~~~~~~~~~~~i~~~~~ 171 (402)
T PLN02894 104 DAPTLVMVHGYGASQG---FF----FRNFDALAS-RFRVIAIDQLGWGGSSRPDFT--CKS--TEETEAWFIDSFEEWRK 171 (402)
T ss_pred CCCEEEEECCCCcchh---HH----HHHHHHHHh-CCEEEEECCCCCCCCCCCCcc--ccc--HHHHHHHHHHHHHHHHH
Confidence 4588999999765432 22 223455654 599999999999987542110 000 00011 122222 3333
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc----------c-h------------------
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------T-F------------------ 455 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~-~------------------ 455 (550)
.. +.+++.|+||||||++++.++.++|++++++|+.+|..-..... . +
T Consensus 172 ~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (402)
T PLN02894 172 AK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKI 248 (402)
T ss_pred Hc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHH
Confidence 22 45689999999999999999999999999998887643110000 0 0
Q ss_pred --------------hhhhccC-------CCCCCcccc---------------------------ccCChhhhhhcCCCcE
Q 008873 456 --------------YTEKYMG-------LPSEDPVGY---------------------------EYSSVMHHVHKMKGKL 487 (550)
Q Consensus 456 --------------~~~~~~g-------~~~~~~~~~---------------------------~~~~~~~~~~~i~~P~ 487 (550)
+....+. ......+.+ ...+....+.++++|+
T Consensus 249 ~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~ 328 (402)
T PLN02894 249 IRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPT 328 (402)
T ss_pred HHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCE
Confidence 0000000 000000000 0112223467788999
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 488 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 488 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
|+++|++|..++ ....++.+.+ +.+++++++|++||.. ..++...+.+.+.+|++.+|
T Consensus 329 liI~G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~ 386 (402)
T PLN02894 329 TFIYGRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYL 386 (402)
T ss_pred EEEEeCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhc
Confidence 999999998665 4454544433 4467899999999986 55677888999999988764
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-15 Score=139.93 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=122.1
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhcc
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 388 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~ 388 (550)
..+++.++.|... +++|+||++||+..... .|....+.|+++||.|+++|++|.++...
T Consensus 37 ~~~p~~v~~P~~~----g~~PvVv~lHG~~~~~~-------~y~~l~~~Las~G~~VvapD~~g~~~~~~---------- 95 (313)
T PLN00021 37 PPKPLLVATPSEA----GTYPVLLFLHGYLLYNS-------FYSQLLQHIASHGFIVVAPQLYTLAGPDG---------- 95 (313)
T ss_pred CCceEEEEeCCCC----CCCCEEEEECCCCCCcc-------cHHHHHHHHHhCCCEEEEecCCCcCCCCc----------
Confidence 4688899999753 67899999999765422 24446788899999999999988542211
Q ss_pred CCCchHHHHHHHHHHHHc--------CCCCCCceEEEEechhHHHHHHHHhhCCC-----eeEEEEEcCCcCCcccccch
Q 008873 389 GRIDAEDQLTGAEWLIKQ--------GLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~--------~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~ 455 (550)
..+++|..++++|+.+. ..+|.++++|+|||+||++++.++..+++ .|++++...|+.......
T Consensus 96 -~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-- 172 (313)
T PLN00021 96 -TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-- 172 (313)
T ss_pred -hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc--
Confidence 11245666667777642 23677899999999999999999988764 578889888875422100
Q ss_pred hhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCC-----CC----ChH-HHHHHHHHHHHcCCCeEEEEcCCC
Q 008873 456 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE-----NV----HFR-HTARLINALVAARKPYEILIFPDE 525 (550)
Q Consensus 456 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~-----~v----~~~-~~~~~~~~l~~~~~~~~~~~~p~~ 525 (550)
...+..+. . ....-++..|+|++++..|. .+ |.. +..++++++ ..+..+++.+++
T Consensus 173 ---------~~~p~il~-~--~~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~---~~~~~~~~~~~~ 237 (313)
T PLN00021 173 ---------QTPPPVLT-Y--APHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNEC---KAPAVHFVAKDY 237 (313)
T ss_pred ---------CCCCcccc-c--CcccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhc---CCCeeeeeecCC
Confidence 00011110 0 01222367899999998763 22 233 336777665 457888899999
Q ss_pred CCc
Q 008873 526 RHM 528 (550)
Q Consensus 526 ~H~ 528 (550)
+|.
T Consensus 238 gH~ 240 (313)
T PLN00021 238 GHM 240 (313)
T ss_pred Ccc
Confidence 996
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=141.34 Aligned_cols=190 Identities=17% Similarity=0.200 Sum_probs=123.1
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|+ .+|.|+++|+||+|.+... ....++++.+ .+.+..
T Consensus 5 ~~iv~~HG~~~~~~-------~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~~---~~~~~~- 63 (245)
T TIGR01738 5 VHLVLIHGWGMNAE-------VFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAAE---AIAAQA- 63 (245)
T ss_pred ceEEEEcCCCCchh-------hHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHHH---HHHHhC-
Confidence 67899999765533 2333455565 4799999999999976421 1122444433 333332
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc---ccc----c-h-------h-------hhhc-----c
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---GYD----T-F-------Y-------TEKY-----M 461 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~---~~~----~-~-------~-------~~~~-----~ 461 (550)
.+++.++||||||++++.++.++|++++++|+.++...+. .+. . . . .+.+ +
T Consensus 64 --~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (245)
T TIGR01738 64 --PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTL 141 (245)
T ss_pred --CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2689999999999999999999999999988876543211 000 0 0 0 0000 1
Q ss_pred CCCCCCc------------------------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCe
Q 008873 462 GLPSEDP------------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 517 (550)
Q Consensus 462 g~~~~~~------------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 517 (550)
+.+.... ..+...+....+.++++|+|+++|++|..+|++....+.+.+ .++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~----~~~ 217 (245)
T TIGR01738 142 GTPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLA----PHS 217 (245)
T ss_pred cCCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhC----CCC
Confidence 1110000 000111222346788999999999999999988877766544 467
Q ss_pred EEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 518 EILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 518 ~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
++.++|+++|.+. .++...+.+.+.+|+
T Consensus 218 ~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 218 ELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred eEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 8999999999873 467788888888874
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-15 Score=148.37 Aligned_cols=196 Identities=17% Similarity=0.163 Sum_probs=127.2
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.||++||.++... .|......|.. +|.|+++|+||+|.+.... ......++.+.+..+.+.
T Consensus 131 ~~~vl~~HG~~~~~~-------~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~~--------~~~~~~~~~~~~~~~~~~- 193 (371)
T PRK14875 131 GTPVVLIHGFGGDLN-------NWLFNHAALAA-GRPVIALDLPGHGASSKAV--------GAGSLDELAAAVLAFLDA- 193 (371)
T ss_pred CCeEEEECCCCCccc-------hHHHHHHHHhc-CCEEEEEcCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHh-
Confidence 478889999766533 23334555554 5999999999999774321 122355666666655544
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh----------------hhccCCCCC-----
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT----------------EKYMGLPSE----- 466 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------~~~~g~~~~----- 466 (550)
++..++.|+|||+||++++.++..+|++++++++.+|..........+. ...+..+..
T Consensus 194 -~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (371)
T PRK14875 194 -LGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQM 272 (371)
T ss_pred -cCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHH
Confidence 3557899999999999999999989999999998877532110000000 000000000
Q ss_pred -----------C-cc------------ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEc
Q 008873 467 -----------D-PV------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522 (550)
Q Consensus 467 -----------~-~~------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 522 (550)
. .. .....+....+.++++|+|+++|++|..+|+.++..+. ..+++.++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~ 345 (371)
T PRK14875 273 VEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVL 345 (371)
T ss_pred HHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEe
Confidence 0 00 00011223356778999999999999999987665432 35788999
Q ss_pred CCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 523 PDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 523 p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
|++||.+ ..++...+.+.+.+||+++
T Consensus 346 ~~~gH~~-~~e~p~~~~~~i~~fl~~~ 371 (371)
T PRK14875 346 PGAGHMP-QMEAAADVNRLLAEFLGKA 371 (371)
T ss_pred CCCCCCh-hhhCHHHHHHHHHHHhccC
Confidence 9999987 3456678888888998753
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=141.93 Aligned_cols=191 Identities=17% Similarity=0.168 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|.+ .|.|+++|+||+|.+... .....+++.+ .+.+.
T Consensus 14 ~~ivllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~---------~~~~~~~~~~---~l~~~-- 71 (256)
T PRK10349 14 VHLVLLHGWGLNAE-------VWRCIDEELSS-HFTLHLVDLPGFGRSRGF---------GALSLADMAE---AVLQQ-- 71 (256)
T ss_pred CeEEEECCCCCChh-------HHHHHHHHHhc-CCEEEEecCCCCCCCCCC---------CCCCHHHHHH---HHHhc--
Confidence 56899999765543 23445666755 599999999999977421 1122444433 33332
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc------cccc-ch--------------hhhhcc-----C
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW------DGYD-TF--------------YTEKYM-----G 462 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~------~~~~-~~--------------~~~~~~-----g 462 (550)
..+++.++||||||++++.++.++|++++++|+.++.... .... .. ....++ +
T Consensus 72 -~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (256)
T PRK10349 72 -APDKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMG 150 (256)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHcc
Confidence 3468999999999999999999999999999887653211 1000 00 000000 0
Q ss_pred CCCCC-----------------c-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 463 LPSED-----------------P-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 463 ~~~~~-----------------~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
.+... . ..+...+....+.++++|+|+++|+.|..+|.+.+..+.+.+ .+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i----~~~~ 226 (256)
T PRK10349 151 TETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLW----PHSE 226 (256)
T ss_pred CchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhC----CCCe
Confidence 00000 0 001112233456778999999999999999987766555443 5678
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+.++|++||.+ ..++...+.+.+.+|-+
T Consensus 227 ~~~i~~~gH~~-~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 227 SYIFAKAAHAP-FISHPAEFCHLLVALKQ 254 (256)
T ss_pred EEEeCCCCCCc-cccCHHHHHHHHHHHhc
Confidence 99999999987 44777888888887754
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-15 Score=146.21 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=125.8
Q ss_pred ceEEEEEcCCCCceeeccccc-ccchhHhHHH-------HhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWI-NTVDMRAQYL-------RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG 399 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~-~~~~~~~~~l-------~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~ 399 (550)
.|.||++||.+++.. .|. .. +...| .+.+|.|+++|+||+|.+...... .........++++.+.
T Consensus 69 gpplvllHG~~~~~~---~~~~~~---~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~~~-~~~~~~~~~~~~~a~~ 141 (360)
T PRK06489 69 DNAVLVLHGTGGSGK---SFLSPT---FAGELFGPGQPLDASKYFIILPDGIGHGKSSKPSDG-LRAAFPRYDYDDMVEA 141 (360)
T ss_pred CCeEEEeCCCCCchh---hhccch---hHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCCcC-CCCCCCcccHHHHHHH
Confidence 477899999876532 221 11 12222 257899999999999977532100 0001112345566544
Q ss_pred HHH-HHHcCCCCCCceE-EEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc---c--ccc---------------hhh
Q 008873 400 AEW-LIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD---G--YDT---------------FYT 457 (550)
Q Consensus 400 ~~~-l~~~~~~d~~~i~-i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~---~--~~~---------------~~~ 457 (550)
+.. +.++- +.+++. |+||||||++++.++.++|++++++|+.++..... . ... .+.
T Consensus 142 ~~~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (360)
T PRK06489 142 QYRLVTEGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYT 219 (360)
T ss_pred HHHHHHHhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 333 33332 335664 89999999999999999999999999876542100 0 000 000
Q ss_pred --h--------h-----------cc-CCCC-C----------------Ccccc-------ccCChhhhhhcCCCcEEEEe
Q 008873 458 --E--------K-----------YM-GLPS-E----------------DPVGY-------EYSSVMHHVHKMKGKLLLVH 491 (550)
Q Consensus 458 --~--------~-----------~~-g~~~-~----------------~~~~~-------~~~~~~~~~~~i~~P~lii~ 491 (550)
. . +. ..+. . ....+ ...+....+.+|++|+|+|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~ 299 (360)
T PRK06489 220 TQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAIN 299 (360)
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEe
Confidence 0 0 00 0000 0 00000 01122334677899999999
Q ss_pred cCCCCCCChHHH--HHHHHHHHHcCCCeEEEEcCCC----CCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 492 GMIDENVHFRHT--ARLINALVAARKPYEILIFPDE----RHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 492 G~~D~~v~~~~~--~~~~~~l~~~~~~~~~~~~p~~----~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
|++|..+|+..+ ..+.+.+ .+.+++++|++ ||.+ . +....+.+.+.+||+++
T Consensus 300 G~~D~~~p~~~~~~~~la~~i----p~a~l~~i~~a~~~~GH~~-~-e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 300 SADDERNPPETGVMEAALKRV----KHGRLVLIPASPETRGHGT-T-GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred cCCCcccChhhHHHHHHHHhC----cCCeEEEECCCCCCCCccc-c-cCHHHHHHHHHHHHHhc
Confidence 999999998865 4554443 45789999996 9987 4 58889999999999764
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=134.98 Aligned_cols=187 Identities=18% Similarity=0.124 Sum_probs=125.7
Q ss_pred EEEEEc-CCCcEEEEEEEcCCCCCCCCCCc-eEEEEEcCCCCceeeccc-ccccchhHhHHHHhCCcEEEEECCCCC-CC
Q 008873 300 IVQIQA-NDGTVLYGALYKPDESRYGPPPY-KTLISVYGGPCVQLVCDS-WINTVDMRAQYLRSKGILVWKLDNRGT-AR 375 (550)
Q Consensus 300 ~~~~~~-~~g~~l~~~~~~P~~~~~~~~~~-P~vv~~hGg~~~~~~~~~-~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~ 375 (550)
.++|.. .-|.++.+.+|.|++..++ ++| |+++|+||++........ ........+...-+-++-|++|.|--- ..
T Consensus 162 a~~f~d~~tgneLkYrly~Pkdy~pd-kky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~if~d 240 (387)
T COG4099 162 AVEFYDESTGNELKYRLYTPKDYAPD-KKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFAD 240 (387)
T ss_pred heEeeccccCceeeEEEecccccCCC-CccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccccccc
Confidence 344432 3578899999999887544 566 999999997654321100 000000001111123455666664320 00
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHH-HHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 454 (550)
+. + --.......+.+++ -|..++.||.+||.++|.|+||++++.++.++|+.|+|++.++|--|.
T Consensus 241 ~e----~-----~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~----- 306 (387)
T COG4099 241 SE----E-----KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR----- 306 (387)
T ss_pred cc----c-----ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-----
Confidence 10 0 00111344555555 677788999999999999999999999999999999999999875331
Q ss_pred hhhhhccCCCCCCccccccCChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcC
Q 008873 455 FYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 523 (550)
Q Consensus 455 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p 523 (550)
..+++.++ .|+.++|+.+|..+|.+.+.-+++.|+..+.++.+..|.
T Consensus 307 ----------------------v~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 307 ----------------------VYLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred ----------------------hhhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 13344443 799999999999999999999999999988888887776
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-15 Score=145.43 Aligned_cols=195 Identities=14% Similarity=0.145 Sum_probs=123.0
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|+ .+|.|+++|+||+|.+...........+ .+|+.+.++.+.
T Consensus 87 ~~vvliHG~~~~~~-------~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~~~~~~~~----a~~l~~~i~~~~---- 150 (354)
T PLN02578 87 LPIVLIHGFGASAF-------HWRYNIPELA-KKYKVYALDLLGFGWSDKALIEYDAMVW----RDQVADFVKEVV---- 150 (354)
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHh-cCCEEEEECCCCCCCCCCcccccCHHHH----HHHHHHHHHHhc----
Confidence 45788999665432 2333445554 4699999999999987654221111111 234444444432
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc---------------ccc--------hhhh-------
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG---------------YDT--------FYTE------- 458 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~--------~~~~------- 458 (550)
.+++.++|||+||++++.++.++|++++++++.++...+.. ... .+..
T Consensus 151 --~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (354)
T PLN02578 151 --KEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLF 228 (354)
T ss_pred --cCCeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999998765422110 000 0000
Q ss_pred ----------h----ccCCC--------------CCCc---cc-c----------ccCChhhhhhcCCCcEEEEecCCCC
Q 008873 459 ----------K----YMGLP--------------SEDP---VG-Y----------EYSSVMHHVHKMKGKLLLVHGMIDE 496 (550)
Q Consensus 459 ----------~----~~g~~--------------~~~~---~~-~----------~~~~~~~~~~~i~~P~lii~G~~D~ 496 (550)
. ....+ ..++ +. + ........+.++++|+|+++|+.|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~ 308 (354)
T PLN02578 229 WQAKQPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDP 308 (354)
T ss_pred HHhcCHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCC
Confidence 0 00000 0000 00 0 0111233467789999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 497 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 497 ~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+|...+.++.+.+ .+.++.++ ++||.+ ..+...++.+.+.+|++
T Consensus 309 ~v~~~~~~~l~~~~----p~a~l~~i-~~GH~~-~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 309 WVGPAKAEKIKAFY----PDTTLVNL-QAGHCP-HDEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCHHHHHHHHHhC----CCCEEEEe-CCCCCc-cccCHHHHHHHHHHHHh
Confidence 99998887776654 34577777 589997 56788889999999985
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=137.76 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=123.7
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.... .|......|. ++|.|+++|+||+|.+...-. .....+++.+.+..+.++-
T Consensus 35 ~~iv~lHG~~~~~~-------~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~~~~~- 98 (286)
T PRK03204 35 PPILLCHGNPTWSF-------LYRDIIVALR-DRFRCVAPDYLGFGLSERPSG-------FGYQIDEHARVIGEFVDHL- 98 (286)
T ss_pred CEEEEECCCCccHH-------HHHHHHHHHh-CCcEEEEECCCCCCCCCCCCc-------cccCHHHHHHHHHHHHHHh-
Confidence 67889999764321 2333455554 469999999999997753210 1123677777777776653
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc-c-----cc---------------chhhhhccC-CC--
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-G-----YD---------------TFYTEKYMG-LP-- 464 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~-~-----~~---------------~~~~~~~~g-~~-- 464 (550)
+.+++.++||||||.+++.++..+|++++++|+.++..-.. . +. ..+.++++. .+
T Consensus 99 -~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (286)
T PRK03204 99 -GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEH 177 (286)
T ss_pred -CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccC
Confidence 44689999999999999999999999999999876543100 0 00 000011110 00
Q ss_pred CCC---ccccccC--------------------C-hhhh----hhc--CCCcEEEEecCCCCCCChHH-HHHHHHHHHHc
Q 008873 465 SED---PVGYEYS--------------------S-VMHH----VHK--MKGKLLLVHGMIDENVHFRH-TARLINALVAA 513 (550)
Q Consensus 465 ~~~---~~~~~~~--------------------~-~~~~----~~~--i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~~ 513 (550)
... ...+... . .+.. ..+ +++|+|+++|++|..+++.. ...+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~i--- 254 (286)
T PRK03204 178 RPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATF--- 254 (286)
T ss_pred CCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhc---
Confidence 000 0001000 0 0001 111 17999999999999886554 44444433
Q ss_pred CCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 514 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 514 ~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
...++.++|++||.+ ..+..+.+.+.+.+||
T Consensus 255 -p~~~~~~i~~aGH~~-~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 255 -PDHVLVELPNAKHFI-QEDAPDRIAAAIIERF 285 (286)
T ss_pred -CCCeEEEcCCCcccc-cccCHHHHHHHHHHhc
Confidence 457899999999997 5578888899999987
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=142.29 Aligned_cols=223 Identities=16% Similarity=0.151 Sum_probs=139.8
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 390 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~ 390 (550)
+..+.|.|.... ..+.| |+++||-.......+. ..+..++++|+++||.|+++|+||.|.+...+ .+..
T Consensus 48 ~~l~~~~~~~~~--~~~~p-vl~v~~~~~~~~~~d~--~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~~~------~~~d 116 (350)
T TIGR01836 48 VVLYRYTPVKDN--THKTP-LLIVYALVNRPYMLDL--QEDRSLVRGLLERGQDVYLIDWGYPDRADRYL------TLDD 116 (350)
T ss_pred EEEEEecCCCCc--CCCCc-EEEeccccccceeccC--CCCchHHHHHHHCCCeEEEEeCCCCCHHHhcC------CHHH
Confidence 445556665421 12345 6778884322221111 12344688999999999999999876432211 1111
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc----------------
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT---------------- 454 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------- 454 (550)
....|+.++++++.++. ..+++.++||||||.+++.++..+|++++++++.++..+......
T Consensus 117 ~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 194 (350)
T TIGR01836 117 YINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVD 194 (350)
T ss_pred HHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHH
Confidence 11245778889988764 346899999999999999999989999999999888766421100
Q ss_pred -------hhhh-hcc-CCCC--------------CCcc---cc-------c-------------------cCC-------
Q 008873 455 -------FYTE-KYM-GLPS--------------EDPV---GY-------E-------------------YSS------- 475 (550)
Q Consensus 455 -------~~~~-~~~-g~~~--------------~~~~---~~-------~-------------------~~~------- 475 (550)
.... .+. -.|. .+.+ .| . .+.
T Consensus 195 ~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~ 274 (350)
T TIGR01836 195 TMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVE 274 (350)
T ss_pred hcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeE
Confidence 0000 000 0000 0000 00 0 000
Q ss_pred ---hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC--CCCCcHHHHHHHHHHHHHHh
Q 008873 476 ---VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 476 ---~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~--~~~~~~~~~~~~~~~fl~~~ 549 (550)
....+.++++|+|+++|++|..+|++.+..+++.+. +.+.++.++++ +|.. ...+....+++.+.+||.++
T Consensus 275 ~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~--~~~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 275 IGGRKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVS--SEDYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred ECCEEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcC--CCCeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHhC
Confidence 011355678999999999999999999988888763 34678888885 6653 33445688999999999864
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=133.41 Aligned_cols=174 Identities=18% Similarity=0.126 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHh--CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~--~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
|.||++||.+++.. .|.. ..+..++.+ .+|.|+++|.+|.+ ++..+.+..+.++
T Consensus 2 p~illlHGf~ss~~---~~~~--~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~ 57 (190)
T PRK11071 2 STLLYLHGFNSSPR---SAKA--TLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLE 57 (190)
T ss_pred CeEEEECCCCCCcc---hHHH--HHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHH
Confidence 67999999766543 2221 123455555 37999999999763 1233344444443
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCC--Ccccc----------ccC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE--DPVGY----------EYS 474 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~----------~~~ 474 (550)
. +.+++.++|+|+||++++.++.++|. + +|+.+|..+.. .. ...+++.... ..+.+ ...
T Consensus 58 ~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 128 (190)
T PRK11071 58 H--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPF--EL--LTDYLGENENPYTGQQYVLESRHIYDLKVM 128 (190)
T ss_pred c--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHH--HH--HHHhcCCcccccCCCcEEEcHHHHHHHHhc
Confidence 2 34689999999999999999999884 3 46667665521 00 0011111000 00001 111
Q ss_pred ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 475 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 475 ~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+. .+. ..+|++++||++|+.||++.+.+++++. .+.++++++|.+.. .+...+.+.+||.
T Consensus 129 ~~~-~i~-~~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~f~~---~~~~~~~i~~fl~ 189 (190)
T PRK11071 129 QID-PLE-SPDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHAFVG---FERYFNQIVDFLG 189 (190)
T ss_pred CCc-cCC-ChhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcchhh---HHHhHHHHHHHhc
Confidence 111 122 4578899999999999999999999843 45677999999944 3778889999975
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-16 Score=141.30 Aligned_cols=178 Identities=24% Similarity=0.206 Sum_probs=119.4
Q ss_pred EEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc---
Q 008873 331 LISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ--- 406 (550)
Q Consensus 331 vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--- 406 (550)
||++|||.......+. ...+...++ +.|+.|+.+|||-..... + ...++|+.++++|+.++
T Consensus 1 v~~~HGGg~~~g~~~~----~~~~~~~la~~~g~~v~~~~Yrl~p~~~--~---------p~~~~D~~~a~~~l~~~~~~ 65 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES----HWPFAARLAAERGFVVVSIDYRLAPEAP--F---------PAALEDVKAAYRWLLKNADK 65 (211)
T ss_dssp EEEE--STTTSCGTTT----HHHHHHHHHHHHTSEEEEEE---TTTSS--T---------THHHHHHHHHHHHHHHTHHH
T ss_pred CEEECCcccccCChHH----HHHHHHHHHhhccEEEEEeecccccccc--c---------cccccccccceeeecccccc
Confidence 6899999776432211 122355555 499999999999765321 1 12389999999999987
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCC----CeeEEEEEcCCcCCc-ccccchh--------------------hhhcc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFP----DVFQCAVSGAPVTSW-DGYDTFY--------------------TEKYM 461 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~----~~~~~~v~~~~~~~~-~~~~~~~--------------------~~~~~ 461 (550)
..+|+++|+|+|+|.||.+++.++.... ..++++++.+|..|+ ......+ .+.++
T Consensus 66 ~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PF07859_consen 66 LGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYL 145 (211)
T ss_dssp HTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHH
T ss_pred ccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccc
Confidence 3479999999999999999999987432 248999999999877 2211111 00111
Q ss_pred CCCCCCccccccCChhhhhhcCC--CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 462 GLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 462 g~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
+ .........+|+.. ..++ .|++|++|+.|..+ .++..++++|++.|++++++++++..|.|
T Consensus 146 ~---~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 146 P---GSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp S---TGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred c---cccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 1 11111223445444 2333 59999999999764 68899999999999999999999999987
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-15 Score=145.93 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=133.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH---H
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA---S 383 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~---~ 383 (550)
+|..+++..+-+... .+.|+||++||+++... .|.... .....|...+|.|+++|.||+|.+...... .
T Consensus 24 ~~~~l~y~~~G~~~~----~~~~~vll~~~~~~~~~---~~~~~~-~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~ 95 (339)
T PRK07581 24 PDARLAYKTYGTLNA----AKDNAILYPTWYSGTHQ---DNEWLI-GPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPF 95 (339)
T ss_pred CCceEEEEecCccCC----CCCCEEEEeCCCCCCcc---cchhhc-cCCCccCcCceEEEEecCCCCCCCCCCCCCCCCC
Confidence 455666555543211 23477787787654432 121000 001345567899999999999987532210 0
Q ss_pred HhhccCCCch-HHHHHHHHHHHHcCCCCCCce-EEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc-----------
Q 008873 384 IKHNCGRIDA-EDQLTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD----------- 450 (550)
Q Consensus 384 ~~~~~~~~~~-~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~----------- 450 (550)
....+....+ +|+.+....+.+.- ..+++ .|+||||||++++.++.++|++++.+|+.++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~l--gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~ 173 (339)
T PRK07581 96 NAARFPHVTIYDNVRAQHRLLTEKF--GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLK 173 (339)
T ss_pred CCCCCCceeHHHHHHHHHHHHHHHh--CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHH
Confidence 0011111123 33333333344432 34674 789999999999999999999999988875432100
Q ss_pred -------c-----cc-----------c-h----hhhhccCC------C-----------------CCCcccc-------c
Q 008873 451 -------G-----YD-----------T-F----YTEKYMGL------P-----------------SEDPVGY-------E 472 (550)
Q Consensus 451 -------~-----~~-----------~-~----~~~~~~g~------~-----------------~~~~~~~-------~ 472 (550)
. +. . . +...++.. . ..++..+ .
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (339)
T PRK07581 174 AALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQ 253 (339)
T ss_pred HHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhh
Confidence 0 00 0 0 00000000 0 0000000 0
Q ss_pred ------c----CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC-CCCcCCCCCcHHHHHHH
Q 008873 473 ------Y----SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD-ERHMPRRHRDRIYMEER 541 (550)
Q Consensus 473 ------~----~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~-~~H~~~~~~~~~~~~~~ 541 (550)
. .+....+.++++|+|+++|+.|..+|+..+..+.+.+ ...++.++++ +||.. ..+....+...
T Consensus 254 ~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~i----p~a~l~~i~~~~GH~~-~~~~~~~~~~~ 328 (339)
T PRK07581 254 RGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFPPEDCEAEAALI----PNAELRPIESIWGHLA-GFGQNPADIAF 328 (339)
T ss_pred hcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCeEEEeCCCCCccc-cccCcHHHHHH
Confidence 0 1223456678999999999999999999887776654 3468899998 89977 44666778899
Q ss_pred HHHHHHHhC
Q 008873 542 IWEFIERTL 550 (550)
Q Consensus 542 ~~~fl~~~l 550 (550)
+.+||++.|
T Consensus 329 ~~~~~~~~~ 337 (339)
T PRK07581 329 IDAALKELL 337 (339)
T ss_pred HHHHHHHHH
Confidence 999998864
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-15 Score=144.20 Aligned_cols=234 Identities=15% Similarity=0.092 Sum_probs=140.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecc--c-c-cccchhHh---HHHHhCCcEEEEECCCC--CCCCc
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCD--S-W-INTVDMRA---QYLRSKGILVWKLDNRG--TARRG 377 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~--~-~-~~~~~~~~---~~l~~~G~~vv~~d~rG--~g~~~ 377 (550)
+|..|.+..+-+.+. ...|.||++||-+++..... . . ...|.... ..|...+|.|+++|+|| +|.++
T Consensus 14 ~~~~~~y~~~g~~~~----~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~ 89 (351)
T TIGR01392 14 SDVRVAYETYGTLNA----ERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTG 89 (351)
T ss_pred CCceEEEEeccccCC----CCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCC
Confidence 566787777765322 12368899999666432100 0 0 00122221 24557899999999999 44333
Q ss_pred hh-hHHH---HhhccCCCchHHHHHHHHHHHHcCCCCCCc-eEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 378 LK-FEAS---IKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 378 ~~-~~~~---~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
.. .... ...+.....++|+.+.+..+.++- ..++ +.|+||||||.+++.++.++|++++++|+.++.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 167 (351)
T TIGR01392 90 PSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAW 167 (351)
T ss_pred CCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHH
Confidence 21 0000 000112345677777766666543 3356 999999999999999999999999999988765321100
Q ss_pred c--------ch---------------------h-----------------hhhccCCC-CC-----------Ccccc---
Q 008873 453 D--------TF---------------------Y-----------------TEKYMGLP-SE-----------DPVGY--- 471 (550)
Q Consensus 453 ~--------~~---------------------~-----------------~~~~~g~~-~~-----------~~~~~--- 471 (550)
. .. + ...+.... .. ..+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (351)
T TIGR01392 168 CIAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRY 247 (351)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHH
Confidence 0 00 0 00000000 00 00001
Q ss_pred ---------------------ccCC-------hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEE-c
Q 008873 472 ---------------------EYSS-------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI-F 522 (550)
Q Consensus 472 ---------------------~~~~-------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~-~ 522 (550)
...+ ....+++|++|+|+|+|++|..+|+..+.++.+.+......++++. +
T Consensus 248 ~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~ 327 (351)
T TIGR01392 248 QGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIE 327 (351)
T ss_pred HHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeC
Confidence 0000 1245667889999999999999999999999888865444444444 5
Q ss_pred CCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 523 PDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 523 p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+++||.. ..+....+.+.+.+||+
T Consensus 328 ~~~GH~~-~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 328 SPYGHDA-FLVETDQVEELIRGFLR 351 (351)
T ss_pred CCCCcch-hhcCHHHHHHHHHHHhC
Confidence 7899987 44677888888999874
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=135.96 Aligned_cols=241 Identities=17% Similarity=0.093 Sum_probs=157.5
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEEcCCCCCC--CCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALYKPDESRY--GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN 370 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~--~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~ 370 (550)
......++.-++.+||-.+...+..+..... .....|+||++||-.++.. +. ....++..+.++||.||.+|.
T Consensus 88 ~p~~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~--~~---YVr~lv~~a~~~G~r~VVfN~ 162 (409)
T KOG1838|consen 88 KPPVEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSH--ES---YVRHLVHEAQRKGYRVVVFNH 162 (409)
T ss_pred CCCCcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCCh--hH---HHHHHHHHHHhCCcEEEEECC
Confidence 3445667788888899888888776654321 1245699999999655543 11 123345666789999999999
Q ss_pred CCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC---CCeeEEEEEcCCcC
Q 008873 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVT 447 (550)
Q Consensus 371 rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~~~~~v~~~~~~ 447 (550)
||.+++...-.. -+-....+|+.++++++.++. -..++..+|.||||.+.+..+++. +.+.+|++..+|.-
T Consensus 163 RG~~g~~LtTpr----~f~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 163 RGLGGSKLTTPR----LFTAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWD 236 (409)
T ss_pred CCCCCCccCCCc----eeecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccch
Confidence 998776432111 111223799999999999874 235899999999999999998864 33555555555542
Q ss_pred Cc--------c----cccc--------------------------------------hhhhhccCCCCCCccccccCChh
Q 008873 448 SW--------D----GYDT--------------------------------------FYTEKYMGLPSEDPVGYEYSSVM 477 (550)
Q Consensus 448 ~~--------~----~~~~--------------------------------------~~~~~~~g~~~~~~~~~~~~~~~ 477 (550)
-. . .|.. .++...+|.+. ..+.|++.|+.
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~-~deYY~~aSs~ 315 (409)
T KOG1838|consen 237 LLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS-VDEYYKKASSS 315 (409)
T ss_pred hhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc-HHHHHhhcchh
Confidence 11 0 0000 00001112211 34668889999
Q ss_pred hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc-CCC--CCcHHHHHHH-HHHHHHH
Q 008873 478 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM-PRR--HRDRIYMEER-IWEFIER 548 (550)
Q Consensus 478 ~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~-~~~--~~~~~~~~~~-~~~fl~~ 548 (550)
..+++|++|+|+|++.+|+.+|.. ++-.-+ ...+..+-+++-..+||- +.. ..+...++++ +.+||.+
T Consensus 316 ~~v~~I~VP~L~ina~DDPv~p~~-~ip~~~--~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~ 387 (409)
T KOG1838|consen 316 NYVDKIKVPLLCINAADDPVVPEE-AIPIDD--IKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGN 387 (409)
T ss_pred hhcccccccEEEEecCCCCCCCcc-cCCHHH--HhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHH
Confidence 999999999999999999999864 222222 234567888888889995 211 1145566666 8888865
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=142.72 Aligned_cols=194 Identities=20% Similarity=0.183 Sum_probs=142.7
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|++.|-++...+.++ .....+..|.|||||+.+++..-......++|+.++++|+..++.+.... +
T Consensus 173 ~~l~~~D~dg~~~~~l~---------~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~ 240 (425)
T COG0823 173 YELALGDYDGYNQQKLT---------DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---N 240 (425)
T ss_pred ceEEEEccCCcceeEec---------ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---c
Confidence 45777777755555553 33456677999999998877754444336899999999998877764322 1
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
..| +|+||+ ++|.++++|..+||++|+.++..++||.+.-....+ .|+|||++|+|++++.+. .+|
T Consensus 241 ~~P---------~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~P-s~spdG~~ivf~Sdr~G~--p~I 308 (425)
T COG0823 241 GAP---------AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSP-SWSPDGSKIVFTSDRGGR--PQI 308 (425)
T ss_pred CCc---------cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCc-cCCCCCCEEEEEeCCCCC--cce
Confidence 112 355554 899999999999999999999988999876444444 599999999999998775 599
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceE-EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKH-VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~-~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
|+++. +|+ ..+++|...+.. ...+||||++|+|..... ..-.+...++.++...+.++..
T Consensus 309 ~~~~~--~g~----~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~-g~~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 309 YLYDL--EGS----QVTRLTFSGGGNSNPVWSPDGDKIVFESSSG-GQWDIDKNDLASGGKIRILTST 369 (425)
T ss_pred EEECC--CCC----ceeEeeccCCCCcCccCCCCCCEEEEEeccC-CceeeEEeccCCCCcEEEcccc
Confidence 99998 665 568888865543 558999999999998542 2256777777766655666554
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=130.79 Aligned_cols=205 Identities=16% Similarity=0.110 Sum_probs=132.2
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
.-|+|+++||-|.... .|......|+++||.|+++|.||.|.+...-....+.. .....|+.+.++.|.
T Consensus 43 ~gP~illlHGfPe~wy-------swr~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~--~~l~~di~~lld~Lg-- 111 (322)
T KOG4178|consen 43 DGPIVLLLHGFPESWY-------SWRHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTI--DELVGDIVALLDHLG-- 111 (322)
T ss_pred CCCEEEEEccCCccch-------hhhhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeH--HHHHHHHHHHHHHhc--
Confidence 4499999999887643 34555778999999999999999997754322111000 011455555555553
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc----------cc-cch----hhh-------------
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD----------GY-DTF----YTE------------- 458 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~----------~~-~~~----~~~------------- 458 (550)
-+|+.++||++|+.+|..++..+|+++++.|+.+...... .+ ..+ +++
T Consensus 112 ----~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~ 187 (322)
T KOG4178|consen 112 ----LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDT 187 (322)
T ss_pred ----cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchh
Confidence 4789999999999999999999999999999876543310 00 000 000
Q ss_pred ---------hccC----CC---CCC--------cc----------------cc---ccCC--hhhhhhcCCCcEEEEecC
Q 008873 459 ---------KYMG----LP---SED--------PV----------------GY---EYSS--VMHHVHKMKGKLLLVHGM 493 (550)
Q Consensus 459 ---------~~~g----~~---~~~--------~~----------------~~---~~~~--~~~~~~~i~~P~lii~G~ 493 (550)
+-.+ .+ ..+ .+ .| ..+. .-....+++.|++++.|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~ 267 (322)
T KOG4178|consen 188 EMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGD 267 (322)
T ss_pred HHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEec
Confidence 0000 00 000 00 01 1111 122345677899999999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 494 IDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 494 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+|...+...-.+.+++.... -.+.++++++||.. ..++..++.+.+++||++.
T Consensus 268 ~D~v~~~p~~~~~~rk~vp~--l~~~vv~~~~gH~v-qqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 268 LDPVLPYPIFGELYRKDVPR--LTERVVIEGIGHFV-QQEKPQEVNQAILGFINSF 320 (322)
T ss_pred CcccccchhHHHHHHHhhcc--ccceEEecCCcccc-cccCHHHHHHHHHHHHHhh
Confidence 99998876334444433211 22678899999988 5588899999999999874
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-16 Score=141.12 Aligned_cols=179 Identities=20% Similarity=0.226 Sum_probs=117.6
Q ss_pred EEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCC
Q 008873 331 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAK 410 (550)
Q Consensus 331 vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 410 (550)
||++||.+.+.. .|..+.+.| ++||.|+++|+||+|.+..... ......++..+.+..++++- .
T Consensus 1 vv~~hG~~~~~~-------~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~l~~~l~~~--~ 64 (228)
T PF12697_consen 1 VVFLHGFGGSSE-------SWDPLAEAL-ARGYRVIAFDLPGHGRSDPPPD------YSPYSIEDYAEDLAELLDAL--G 64 (228)
T ss_dssp EEEE-STTTTGG-------GGHHHHHHH-HTTSEEEEEECTTSTTSSSHSS------GSGGSHHHHHHHHHHHHHHT--T
T ss_pred eEEECCCCCCHH-------HHHHHHHHH-hCCCEEEEEecCCccccccccc------cCCcchhhhhhhhhhccccc--c
Confidence 689999877643 344467777 4899999999999998764321 11122444444444444432 2
Q ss_pred CCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc------chhh---------------hhcc-CCCCCCc
Q 008873 411 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------TFYT---------------EKYM-GLPSEDP 468 (550)
Q Consensus 411 ~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~---------------~~~~-g~~~~~~ 468 (550)
.+++.++|||+||.+++.++.++|++++++++.+|........ .... ..+. .......
T Consensus 65 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (228)
T PF12697_consen 65 IKKVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEP 144 (228)
T ss_dssp TSSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred cccccccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccc
Confidence 3689999999999999999999999999999999887532110 0000 0000 0000000
Q ss_pred --------c----c----cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 469 --------V----G----YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 469 --------~----~----~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
+ . +........+.++++|+++++|+.|..++.....++.+. ..+++++++|+++|.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~----~~~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 145 EDLIRSSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADK----LPNAELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHH----STTEEEEEETTSSSTH
T ss_pred cccccccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHH----CCCCEEEEECCCCCcc
Confidence 0 0 012233456788899999999999999996666655544 3578999999999986
|
... |
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=127.19 Aligned_cols=127 Identities=20% Similarity=0.113 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccc
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 472 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 472 (550)
.+.+.+++..+.++..+|.+|++++|+|.|+.+++.++.++|+.|+++++.+|......-
T Consensus 80 ~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~-------------------- 139 (207)
T COG0400 80 TEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE-------------------- 139 (207)
T ss_pred HHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc--------------------
Confidence 344555666666677789999999999999999999999999999999999886432100
Q ss_pred cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 473 YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 473 ~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.....-.+|+|++||+.|++||...+.++.+.|++.|.+++...++ .||.+.. +.++.+.+|+.+.+
T Consensus 140 -----~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~-----e~~~~~~~wl~~~~ 206 (207)
T COG0400 140 -----LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPP-----EELEAARSWLANTL 206 (207)
T ss_pred -----cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCH-----HHHHHHHHHHHhcc
Confidence 0011224799999999999999999999999999999999999999 7999833 45677888988753
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-15 Score=132.33 Aligned_cols=157 Identities=24% Similarity=0.301 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhh-----hccC-----
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTE-----KYMG----- 462 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~g----- 462 (550)
++=+..|++||.+++.+++++|+|+|.|.||-+|+.+++.+| .++|+|+.+|..-.......+.. .++.
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 455789999999999999999999999999999999999988 67999998875321110000000 0000
Q ss_pred ---CCCCCccc---c------ccCChhhhhhcCCCcEEEEecCCCCCCChH-HHHHHHHHHHHcCCC--eEEEEcCCCCC
Q 008873 463 ---LPSEDPVG---Y------EYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAARKP--YEILIFPDERH 527 (550)
Q Consensus 463 ---~~~~~~~~---~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~~--~~~~~~p~~~H 527 (550)
........ + ......-.++++++|+|+++|++|...|-. .+..+.++|++++.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 00000000 0 001112347888999999999999999865 455666778888765 88999999999
Q ss_pred cCCCC---------------------------CcHHHHHHHHHHHHHHhC
Q 008873 528 MPRRH---------------------------RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 528 ~~~~~---------------------------~~~~~~~~~~~~fl~~~l 550 (550)
.+..+ ....+.++++++||++||
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L 211 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHL 211 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 86321 145788999999999987
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=131.60 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=134.2
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh
Q 008873 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 379 (550)
Q Consensus 300 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~ 379 (550)
.+.+++..|. +.++++.|.+. ++.|+||++||.+.... .+...+...++.|+++||.|+.+|+||+|.+...
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~----~~~~~VlllHG~g~~~~---~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~ 73 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAV----GPRGVVIYLPPFAEEMN---KSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGD 73 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCC----CCceEEEEECCCccccc---chhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCc
Confidence 3556665554 66777877653 35689999999644321 1112234457888899999999999999987543
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh--
Q 008873 380 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT-- 457 (550)
Q Consensus 380 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-- 457 (550)
+.......+ .+|+..+++++.+++ ..+|+|+|+||||.+++.++.++|+.++++|+.+|+..-..+...+.
T Consensus 74 ~~~~~~~~~----~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl 146 (266)
T TIGR03101 74 FAAARWDVW----KEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRL 146 (266)
T ss_pred cccCCHHHH----HHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHH
Confidence 322111122 688889999997763 46899999999999999999999999999999999876433221110
Q ss_pred ---hhcc-CCCCCCc---------------cccccC-ChhhhhhcC--------CCcEEEEecCCC-CCCChHHHHHHHH
Q 008873 458 ---EKYM-GLPSEDP---------------VGYEYS-SVMHHVHKM--------KGKLLLVHGMID-ENVHFRHTARLIN 508 (550)
Q Consensus 458 ---~~~~-g~~~~~~---------------~~~~~~-~~~~~~~~i--------~~P~lii~G~~D-~~v~~~~~~~~~~ 508 (550)
.+.+ +...... ..|.-. .....++++ ..++|++.-+-+ .........++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (266)
T TIGR03101 147 RLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPKNCPVHWFEVRPEEGATLSPVFSRLGE 226 (266)
T ss_pred HHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCCCCceEEEEeccccCCCCCHHHHHHHH
Confidence 0001 1110000 001000 001111111 346777765332 2233456788899
Q ss_pred HHHHcCCCeEEEEcCCC
Q 008873 509 ALVAARKPYEILIFPDE 525 (550)
Q Consensus 509 ~l~~~~~~~~~~~~p~~ 525 (550)
++++.|+.++...|++.
T Consensus 227 ~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 227 QWVQSGVEVTVDLVPGP 243 (266)
T ss_pred HHHHcCCeEeeeecCCc
Confidence 99999999999999997
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=135.81 Aligned_cols=189 Identities=10% Similarity=0.047 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+++.. .|......| .+|.|+++|+||+|.+..... ..+++..+.+..+.++.
T Consensus 3 p~vvllHG~~~~~~-------~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~~---------~~~~~~~~~l~~~l~~~- 63 (242)
T PRK11126 3 PWLVFLHGLLGSGQ-------DWQPVGEAL--PDYPRLYIDLPGHGGSAAISV---------DGFADVSRLLSQTLQSY- 63 (242)
T ss_pred CEEEEECCCCCChH-------HHHHHHHHc--CCCCEEEecCCCCCCCCCccc---------cCHHHHHHHHHHHHHHc-
Confidence 67999999877643 234445556 379999999999998764211 12444444444444332
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCCcCCccccc---------chhhh------------hcc-----
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDGYD---------TFYTE------------KYM----- 461 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~---------~~~~~------------~~~----- 461 (550)
+.+++.++||||||.+++.++.++++ +++++++.++........ ..+.. .++
T Consensus 64 -~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (242)
T PRK11126 64 -NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVF 142 (242)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchh
Confidence 34789999999999999999999865 489888876543211000 00000 000
Q ss_pred C-CCCCCcccc----------------------ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 462 G-LPSEDPVGY----------------------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 462 g-~~~~~~~~~----------------------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
. ........+ ...+....+.++++|+|+++|++|..+. .+.+. .+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~ 212 (242)
T PRK11126 143 ASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-----LALP 212 (242)
T ss_pred hccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-----hcCe
Confidence 0 000000000 0011223567789999999999998542 22221 2578
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+.+++++||.+ ..++.+.+.+.+.+||++
T Consensus 213 ~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 213 LHVIPNAGHNA-HRENPAAFAASLAQILRL 241 (242)
T ss_pred EEEeCCCCCch-hhhChHHHHHHHHHHHhh
Confidence 99999999987 457788899999999975
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.6e-15 Score=143.15 Aligned_cols=176 Identities=14% Similarity=0.122 Sum_probs=111.2
Q ss_pred HHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCc-eEEEEechhHHHHHHHHhhCCC
Q 008873 357 YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPD 435 (550)
Q Consensus 357 ~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~~a~~~~~~~~~ 435 (550)
.|.+.+|.|+++|.||+|++... .....|..+.+..+.+.- +.++ +.++||||||++++.++.++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~~~----------~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSLDV----------PIDTADQADAIALLLDAL--GIARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCCCCCCCCC----------CCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHHHHHHHHChH
Confidence 35456899999999998765321 011233333333333321 3335 4799999999999999999999
Q ss_pred eeEEEEEcCCcCCccccc----c---h-------------------------------hhhhccCCCC-------CCcc-
Q 008873 436 VFQCAVSGAPVTSWDGYD----T---F-------------------------------YTEKYMGLPS-------EDPV- 469 (550)
Q Consensus 436 ~~~~~v~~~~~~~~~~~~----~---~-------------------------------~~~~~~g~~~-------~~~~- 469 (550)
+++++|+.++........ . . +...+...+. ....
T Consensus 162 ~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T PRK08775 162 RVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAED 241 (343)
T ss_pred hhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHH
Confidence 999999987653211000 0 0 0000000000 0000
Q ss_pred --------ccccCCh-------------hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC-CCC
Q 008873 470 --------GYEYSSV-------------MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD-ERH 527 (550)
Q Consensus 470 --------~~~~~~~-------------~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~-~~H 527 (550)
.....++ ...+.++++|+|+++|+.|..+|+....++.+++ ....++.++++ +||
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i---~p~a~l~~i~~~aGH 318 (343)
T PRK08775 242 YLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGL---GPRGSLRVLRSPYGH 318 (343)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHc---CCCCeEEEEeCCccH
Confidence 0000000 0124678899999999999999999888887765 23578999985 999
Q ss_pred cCCCCCcHHHHHHHHHHHHHH
Q 008873 528 MPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 528 ~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.. ..+..+.+.+.+.+||++
T Consensus 319 ~~-~lE~Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 319 DA-FLKETDRIDAILTTALRS 338 (343)
T ss_pred HH-HhcCHHHHHHHHHHHHHh
Confidence 87 456788999999999975
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-14 Score=139.38 Aligned_cols=236 Identities=15% Similarity=0.102 Sum_probs=142.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc-----c-ccchhHh---HHHHhCCcEEEEECCCCC-CCC
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW-----I-NTVDMRA---QYLRSKGILVWKLDNRGT-ARR 376 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-----~-~~~~~~~---~~l~~~G~~vv~~d~rG~-g~~ 376 (550)
+|..+.+..+-..+. ...|.||++||.+++......+ . ..|.... ..+...+|.|+++|.+|. +++
T Consensus 31 ~~~~~~y~~~G~~~~----~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s 106 (379)
T PRK00175 31 PPVELAYETYGTLNA----DRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGS 106 (379)
T ss_pred CCceEEEEeccccCC----CCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCC
Confidence 445566666543211 2248899999977664311000 0 0122111 123367999999999984 333
Q ss_pred -chhhHH-----HHhhccCCCchHHHHHHHHHHHHcCCCCCCc-eEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc
Q 008873 377 -GLKFEA-----SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 449 (550)
Q Consensus 377 -~~~~~~-----~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~ 449 (550)
+..... ..........++|+.+.+..+.++- +.++ +.++||||||.+++.++.++|++++++|+.++....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 184 (379)
T PRK00175 107 TGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARL 184 (379)
T ss_pred CCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCccc
Confidence 211000 0000112345677777666666543 3356 489999999999999999999999999988764321
Q ss_pred ccc---------cch--------------------------------hh-----hhccCC--CCCC----------cccc
Q 008873 450 DGY---------DTF--------------------------------YT-----EKYMGL--PSED----------PVGY 471 (550)
Q Consensus 450 ~~~---------~~~--------------------------------~~-----~~~~g~--~~~~----------~~~~ 471 (550)
... ... +. ...+.. .... .+.+
T Consensus 185 ~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 264 (379)
T PRK00175 185 SAQNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESY 264 (379)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHH
Confidence 100 000 00 000000 0000 0000
Q ss_pred ---------ccC-----------------------ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEE
Q 008873 472 ---------EYS-----------------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 519 (550)
Q Consensus 472 ---------~~~-----------------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 519 (550)
... +....+.+|++|+|+|+|++|..+|+..+.++.+.+...+..+++
T Consensus 265 l~~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l 344 (379)
T PRK00175 265 LRYQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSY 344 (379)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEE
Confidence 000 112345678999999999999999999999999998776667788
Q ss_pred EEcC-CCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 520 LIFP-DERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 520 ~~~p-~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++ ++||.. ..+....+.+.+.+||.+.
T Consensus 345 ~~i~~~~GH~~-~le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 345 AEIDSPYGHDA-FLLDDPRYGRLVRAFLERA 374 (379)
T ss_pred EEeCCCCCchh-HhcCHHHHHHHHHHHHHhh
Confidence 8775 899987 4466778899999999763
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-14 Score=137.44 Aligned_cols=215 Identities=12% Similarity=0.085 Sum_probs=134.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.++..+++....+ ...|.||++||.+.... .|...+..|+ .+|.|+++|++|+|.+......
T Consensus 112 ~~~~~~~y~~~G~-------~~~~~ivllHG~~~~~~-------~w~~~~~~L~-~~~~Via~DlpG~G~S~~p~~~--- 173 (383)
T PLN03084 112 SDLFRWFCVESGS-------NNNPPVLLIHGFPSQAY-------SYRKVLPVLS-KNYHAIAFDWLGFGFSDKPQPG--- 173 (383)
T ss_pred CCceEEEEEecCC-------CCCCeEEEECCCCCCHH-------HHHHHHHHHh-cCCEEEEECCCCCCCCCCCccc---
Confidence 4666665443322 22378899999876543 3344566665 4899999999999977543210
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc--ccc---hh----
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YDT---FY---- 456 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--~~~---~~---- 456 (550)
......++++.+.+..++++- ..+++.|+|+|+||.+++.++.++|++++++|+.+|...... ... .+
T Consensus 174 -~~~~ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l 250 (383)
T PLN03084 174 -YGFNYTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFL 250 (383)
T ss_pred -ccccCCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHH
Confidence 001223555555555544432 335799999999999999999999999999999987642110 000 00
Q ss_pred -----h-------hhccC--CCC----CCcccc------------------ccC-Ch----hhhh------hcCCCcEEE
Q 008873 457 -----T-------EKYMG--LPS----EDPVGY------------------EYS-SV----MHHV------HKMKGKLLL 489 (550)
Q Consensus 457 -----~-------~~~~g--~~~----~~~~~~------------------~~~-~~----~~~~------~~i~~P~li 489 (550)
. ...+. .+. +....| ... .. .... .++++|+|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLi 330 (383)
T PLN03084 251 LGEIFSQDPLRASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITV 330 (383)
T ss_pred hhhhhhcchHHHHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEE
Confidence 0 00000 000 000000 000 00 0001 246899999
Q ss_pred EecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 490 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 490 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
++|+.|..++.....++.+. .+.++.++|+++|.+ ..+..+.+.+.+.+||.
T Consensus 331 I~G~~D~~v~~~~~~~~a~~-----~~a~l~vIp~aGH~~-~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 331 CWGLRDRWLNYDGVEDFCKS-----SQHKLIELPMAGHHV-QEDCGEELGGIISGILS 382 (383)
T ss_pred EeeCCCCCcCHHHHHHHHHh-----cCCeEEEECCCCCCc-chhCHHHHHHHHHHHhh
Confidence 99999999998876666553 256889999999987 45788889999999986
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-13 Score=127.54 Aligned_cols=199 Identities=14% Similarity=0.094 Sum_probs=120.3
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|.||++||...... .|..+...|.+.||.|+++|+||+|.+..... ....+++....+..++++
T Consensus 17 ~~p~vvliHG~~~~~~-------~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~-------~~~~~~~~~~~l~~~i~~ 82 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-------CWYKIRCLMENSGYKVTCIDLKSAGIDQSDAD-------SVTTFDEYNKPLIDFLSS 82 (273)
T ss_pred CCCeEEEECCCCCCcC-------cHHHHHHHHHhCCCEEEEecccCCCCCCCCcc-------cCCCHHHHHHHHHHHHHh
Confidence 3488999999765532 34556778888999999999999986532110 112244444444433332
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc----------hh--hh----hcc---------
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT----------FY--TE----KYM--------- 461 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------~~--~~----~~~--------- 461 (550)
-. ..+++.++||||||.++..++..+|++++++|..++......+.. .. .. .+.
T Consensus 83 l~-~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (273)
T PLN02211 83 LP-ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTS 161 (273)
T ss_pred cC-CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCce
Confidence 11 236899999999999999999989999999998866422100000 00 00 000
Q ss_pred --------------CCCCCCcc------------ccccCChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 462 --------------GLPSEDPV------------GYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 462 --------------g~~~~~~~------------~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
..+..... .+..........++ ++|+++|.|++|..+|++....+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~--- 238 (273)
T PLN02211 162 AIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWP--- 238 (273)
T ss_pred eeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCC---
Confidence 00000000 00000000112344 6799999999999999998888876642
Q ss_pred CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 515 KPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
..+++.++ +||.. ..+....+.+.+.+..
T Consensus 239 -~~~~~~l~-~gH~p-~ls~P~~~~~~i~~~a 267 (273)
T PLN02211 239 -PSQVYELE-SDHSP-FFSTPFLLFGLLIKAA 267 (273)
T ss_pred -ccEEEEEC-CCCCc-cccCHHHHHHHHHHHH
Confidence 23677776 79986 4466666666666554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=130.92 Aligned_cols=191 Identities=19% Similarity=0.162 Sum_probs=135.8
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
...|+++|.+++..+++.. .......++|||||+.+++...+. +..+||++++++|+.+.+.......
T Consensus 169 ~~~l~~~d~~g~~~~~l~~---------~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~~g~~~~~~~~~~~~-- 236 (417)
T TIGR02800 169 RYELQVADYDGANPQTITR---------SREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLATGQREKVASFPGMN-- 236 (417)
T ss_pred cceEEEEcCCCCCCEEeec---------CCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEeecCCCCc--
Confidence 4579999999888777743 233466789999999998886554 3467999999999887776532211
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
..+ .|++|+ +++....+|..+||++++.+++.++|+........+ .|++||++|+|.+++.+. .+
T Consensus 237 -----~~~-----~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g~--~~ 303 (417)
T TIGR02800 237 -----GAP-----AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPDGKSIAFTSDRGGS--PQ 303 (417)
T ss_pred -----cce-----EECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCE-EECCCCCEEEEEECCCCC--ce
Confidence 111 345544 677777778889999999988888888754333333 499999999999886553 58
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
||.+++ .+. +.++++... ....+.|||||++++++.... ...+++++++.++. .+.+.
T Consensus 304 iy~~d~--~~~----~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~~-~~~l~ 362 (417)
T TIGR02800 304 IYMMDA--DGG----EVRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGGG-ERVLT 362 (417)
T ss_pred EEEEEC--CCC----CEEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCCC-eEEcc
Confidence 999998 443 456666443 345668999999998886553 33489999987654 44454
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=136.41 Aligned_cols=216 Identities=21% Similarity=0.306 Sum_probs=149.8
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHh--HHHHhCCcEEEEECCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA--QYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~--~~l~~~G~~vv~~d~rG~g 374 (550)
....+.++..||+.|...+|+|++. +++|+++..+-.|....... +........ ..++++||+||..|.||.+
T Consensus 18 ~~~~v~V~MRDGvrL~~dIy~Pa~~----g~~Pvll~~~~~Py~k~~~~-~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 18 IERDVMVPMRDGVRLAADIYRPAGA----GPLPVLLSRTRLPYRKRNGT-FGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred eeeeeeEEecCCeEEEEEEEccCCC----CCCceeEEeecccccccccc-CcchhhcccccceeecCceEEEEecccccc
Confidence 4567899999999999999999875 68999998885454433111 111111111 2688999999999999999
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc---
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--- 451 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--- 451 (550)
+|...+..... .+.+|-.+.|+||.++++.+ .+|+.+|.||+|+..+++|+..|.-.||++..++..|.-.
T Consensus 93 ~SeG~~~~~~~-----~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~~ 166 (563)
T COG2936 93 GSEGVFDPESS-----REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDDA 166 (563)
T ss_pred cCCcccceecc-----ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccccccccc
Confidence 99877663322 46899999999999999866 6899999999999999999998888899999888766210
Q ss_pred -c--------cchhh---------------------------hhc--------cCCCCC------C---ccccccCChhh
Q 008873 452 -Y--------DTFYT---------------------------EKY--------MGLPSE------D---PVGYEYSSVMH 478 (550)
Q Consensus 452 -~--------~~~~~---------------------------~~~--------~g~~~~------~---~~~~~~~~~~~ 478 (550)
+ ...|. +.+ .+.|+. . .+.|.+.+-..
T Consensus 167 ~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~~~ 246 (563)
T COG2936 167 FYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDRVA 246 (563)
T ss_pred ccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCccc
Confidence 0 00000 000 011111 0 01344445566
Q ss_pred hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 479 ~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
...++++|+|.+.|-.|.. ...+.+++..+... +..+++-|- .|.
T Consensus 247 d~~~i~vP~L~i~gW~D~~--l~~~~~~~~~~~~r--~~~lvvgPw-~H~ 291 (563)
T COG2936 247 DLSKIKVPALVIGGWSDGY--LHTAIKLFAFLRSR--PVKLVVGPW-THG 291 (563)
T ss_pred ccccCCCcEEEEccccccc--ccchHHHhhhcccC--CceeEEccc-ccC
Confidence 7888999999999999974 44667777777554 344554443 454
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=125.33 Aligned_cols=205 Identities=19% Similarity=0.235 Sum_probs=126.2
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
..+.+|++||.+.+.. .|.. ....|++ ...|.++|..|.|.+.+.--.. + .......+++.++.-...
T Consensus 89 ~~~plVliHGyGAg~g---~f~~----Nf~~La~-~~~vyaiDllG~G~SSRP~F~~---d-~~~~e~~fvesiE~WR~~ 156 (365)
T KOG4409|consen 89 NKTPLVLIHGYGAGLG---LFFR----NFDDLAK-IRNVYAIDLLGFGRSSRPKFSI---D-PTTAEKEFVESIEQWRKK 156 (365)
T ss_pred CCCcEEEEeccchhHH---HHHH----hhhhhhh-cCceEEecccCCCCCCCCCCCC---C-cccchHHHHHHHHHHHHH
Confidence 3455677999655543 1211 2344555 8999999999999886531111 1 111122333333333222
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc--c-------c-chh--------------hhhccC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--Y-------D-TFY--------------TEKYMG 462 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--~-------~-~~~--------------~~~~~g 462 (550)
- .-+++.|+|||+|||++..+|.+||++++.+|+.+|..-... + . .++ .-+.+|
T Consensus 157 ~--~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~G 234 (365)
T KOG4409|consen 157 M--GLEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMG 234 (365)
T ss_pred c--CCcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhcc
Confidence 2 346899999999999999999999999999999988521100 0 0 000 000111
Q ss_pred -----------------CCC---CC-------------------------ccccccCChhhhhhcCC--CcEEEEecCCC
Q 008873 463 -----------------LPS---ED-------------------------PVGYEYSSVMHHVHKMK--GKLLLVHGMID 495 (550)
Q Consensus 463 -----------------~~~---~~-------------------------~~~~~~~~~~~~~~~i~--~P~lii~G~~D 495 (550)
.|. ++ +-.+.+...+..+..++ +|+++|+|+.|
T Consensus 235 p~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~d 314 (365)
T KOG4409|consen 235 PLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRD 314 (365)
T ss_pred ccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcc
Confidence 010 00 11122233345566666 89999999998
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 496 ENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 496 ~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
-+ ....+.++...+ ....++.+++|++||.. .-.+.+.+.+.++.++++.
T Consensus 315 Wm-D~~~g~~~~~~~--~~~~~~~~~v~~aGHhv-ylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 315 WM-DKNAGLEVTKSL--MKEYVEIIIVPGAGHHV-YLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred cc-cchhHHHHHHHh--hcccceEEEecCCCcee-ecCCHHHHHHHHHHHHhcc
Confidence 54 455566666655 34568999999999987 4467788888888888753
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=117.23 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=129.0
Q ss_pred hhHhHHHHhCCcEEEEECCCCC-CCC----chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHH
Q 008873 352 DMRAQYLRSKGILVWKLDNRGT-ARR----GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLS 426 (550)
Q Consensus 352 ~~~~~~l~~~G~~vv~~d~rG~-g~~----~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a 426 (550)
...+..++.+||.|+.||+-.. ..+ .......+.+.-.+...+|+...++||+.++ +..+||++|+++||.++
T Consensus 57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~v 134 (242)
T KOG3043|consen 57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVV 134 (242)
T ss_pred HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEE
Confidence 3457778889999999996532 111 1122233334444566889999999999776 67899999999999999
Q ss_pred HHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHH
Q 008873 427 AITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~ 506 (550)
..+....+ .|.++++..|..- ....+.++++|+|++.|+.|..+|+..-.++
T Consensus 135 v~~~~~~~-~f~a~v~~hps~~---------------------------d~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ 186 (242)
T KOG3043|consen 135 VTLSAKDP-EFDAGVSFHPSFV---------------------------DSADIANVKAPILFLFAELDEDVPPKDVKAW 186 (242)
T ss_pred EEeeccch-hheeeeEecCCcC---------------------------ChhHHhcCCCCEEEEeecccccCCHHHHHHH
Confidence 88888766 7888888766311 1356788899999999999999999988888
Q ss_pred HHHHHHcCC-CeEEEEcCCCCCcCCC----------CCcHHHHHHHHHHHHHHhC
Q 008873 507 INALVAARK-PYEILIFPDERHMPRR----------HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 507 ~~~l~~~~~-~~~~~~~p~~~H~~~~----------~~~~~~~~~~~~~fl~~~l 550 (550)
-+++..... ..++.+|++.+|+|.. ....++.++.++.||+++|
T Consensus 187 ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 187 EEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 888876543 4589999999999853 1335778999999999885
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-12 Score=126.35 Aligned_cols=206 Identities=15% Similarity=0.120 Sum_probs=127.6
Q ss_pred CCCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC----cEEEEEC
Q 008873 295 LEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG----ILVWKLD 369 (550)
Q Consensus 295 ~~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G----~~vv~~d 369 (550)
....+.+.+.+. -|.+..+++|.|++.. ++++|||+++||....... ........|.+.| .+||++|
T Consensus 177 ~g~~~~~~~~S~~Lg~~r~v~VY~P~~y~--~~~~PvlyllDG~~w~~~~------~~~~~ld~li~~g~i~P~ivV~id 248 (411)
T PRK10439 177 ESPAKEIIWKSERLGNSRRVWIYTTGDAA--PEERPLAILLDGQFWAESM------PVWPALDSLTHRGQLPPAVYLLID 248 (411)
T ss_pred CCceEEEEEEccccCCceEEEEEECCCCC--CCCCCEEEEEECHHhhhcC------CHHHHHHHHHHcCCCCceEEEEEC
Confidence 334566677664 4677889999998763 3689999999996543210 1122344555666 5678888
Q ss_pred CCCCCCCchhhHHHHhhccCCCchHHH-HHHHHHHHHcC--CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 370 NRGTARRGLKFEASIKHNCGRIDAEDQ-LTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 370 ~rG~g~~~~~~~~~~~~~~~~~~~~D~-~~~~~~l~~~~--~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
.........+.. ....+ .+.+ .+.+-++.++. ..|+++.+|.|+||||+.|++++.++|++|.++++.+|.
T Consensus 249 ~~~~~~R~~el~--~~~~f----~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs 322 (411)
T PRK10439 249 AIDTTHRSQELP--CNADF----WLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGS 322 (411)
T ss_pred CCCcccccccCC--chHHH----HHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccc
Confidence 643221111110 00010 1111 23334555442 257889999999999999999999999999999999986
Q ss_pred CCcccccchhhhhccCCCCCCccccccCChhhh--hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC
Q 008873 447 TSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524 (550)
Q Consensus 447 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~ 524 (550)
.-|.... + .....+.. .+.. ...-...++|-+|..|... ...+.++++.|+++|.++++.++++
T Consensus 323 ~ww~~~~--------~---~~~~~l~~--~l~~~~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G 388 (411)
T PRK10439 323 FWWPHRG--------G---QQEGVLLE--QLKAGEVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG 388 (411)
T ss_pred eecCCcc--------C---CchhHHHH--HHHhcccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4222100 0 00000000 0001 1111236888899988543 5678999999999999999999998
Q ss_pred CCCcC
Q 008873 525 ERHMP 529 (550)
Q Consensus 525 ~~H~~ 529 (550)
||..
T Consensus 389 -GHd~ 392 (411)
T PRK10439 389 -GHDA 392 (411)
T ss_pred -CcCH
Confidence 6975
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=128.05 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=146.5
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccccc-----ccc-hh---HhHHHHhCCcEEEEECCCCCCCC---
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI-----NTV-DM---RAQYLRSKGILVWKLDNRGTARR--- 376 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-----~~~-~~---~~~~l~~~G~~vv~~d~rG~g~~--- 376 (550)
.+|.+..|-..+. .+-++||++|+-.++......+. ..| .. .-+.+-..-|-|+++|.-|++.+
T Consensus 41 ~~~~Y~t~G~ln~----~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p 116 (389)
T PRK06765 41 VQMGYETYGTLNR----AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDP 116 (389)
T ss_pred ceEEEEeccccCC----CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCC
Confidence 4566666655443 34589999999655432211100 111 10 12234456799999999987531
Q ss_pred -----chhhHHHH-----hhccCCCchHHHHHHHHHHHHcCCCCCCceE-EEEechhHHHHHHHHhhCCCeeEEEEEcCC
Q 008873 377 -----GLKFEASI-----KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAP 445 (550)
Q Consensus 377 -----~~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~ 445 (550)
|..-.+.. ..++....+.|+.+++..++++- .-+++. ++||||||++++.++.++|++++.+|++++
T Consensus 117 ~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 117 NVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred CCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 21111010 01344567889888888887653 345775 999999999999999999999999888754
Q ss_pred cCC---cc--c-------------------cc-----------------------chhhhhccCC------CC------C
Q 008873 446 VTS---WD--G-------------------YD-----------------------TFYTEKYMGL------PS------E 466 (550)
Q Consensus 446 ~~~---~~--~-------------------~~-----------------------~~~~~~~~g~------~~------~ 466 (550)
... +. . |. .++.+++... +. .
T Consensus 195 ~~~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~ 274 (389)
T PRK06765 195 NPQNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLT 274 (389)
T ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchh
Confidence 321 10 0 00 0000000000 00 0
Q ss_pred Ccccccc-------------------------------CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 467 DPVGYEY-------------------------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 467 ~~~~~~~-------------------------------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
..+.|.. .+....+.++++|+|+|+|+.|..+|+..+.++.+.+...+.
T Consensus 275 ~~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~ 354 (389)
T PRK06765 275 SFEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGK 354 (389)
T ss_pred hHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCC
Confidence 0001100 023345667899999999999999999999999888876666
Q ss_pred CeEEEEcCC-CCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 516 PYEILIFPD-ERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 516 ~~~~~~~p~-~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++.++++ .||.. ..++...+.+.+.+||++.
T Consensus 355 ~a~l~~I~s~~GH~~-~le~p~~~~~~I~~FL~~~ 388 (389)
T PRK06765 355 YAEVYEIESINGHMA-GVFDIHLFEKKIYEFLNRK 388 (389)
T ss_pred CeEEEEECCCCCcch-hhcCHHHHHHHHHHHHccc
Confidence 789999986 89986 4467788899999999753
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=116.18 Aligned_cols=231 Identities=15% Similarity=0.070 Sum_probs=140.7
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCC-CCCCc
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG-TARRG 377 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG-~g~~~ 377 (550)
+..+|.+ +|....+++|.|.... ++.|+||++||+.++........ .| -+.....||.|+.||.-. +-.-.
T Consensus 36 ~~~s~~~-~g~~r~y~l~vP~g~~---~~apLvv~LHG~~~sgag~~~~s-g~---d~lAd~~gFlV~yPdg~~~~wn~~ 107 (312)
T COG3509 36 SVASFDV-NGLKRSYRLYVPPGLP---SGAPLVVVLHGSGGSGAGQLHGT-GW---DALADREGFLVAYPDGYDRAWNAN 107 (312)
T ss_pred Ccccccc-CCCccceEEEcCCCCC---CCCCEEEEEecCCCChHHhhccc-ch---hhhhcccCcEEECcCccccccCCC
Confidence 4445554 5677899999999864 34499999999766543222211 22 234446899999996332 11011
Q ss_pred hhhHH--HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC-cc-ccc
Q 008873 378 LKFEA--SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS-WD-GYD 453 (550)
Q Consensus 378 ~~~~~--~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~-~~-~~~ 453 (550)
..+.. ......+..++..+.+.+..|+.+..||+.||.|.|.|.||.|+.++++.+|++|.++..+++... -. ...
T Consensus 108 ~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~~~ 187 (312)
T COG3509 108 GCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVACTP 187 (312)
T ss_pred cccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcccCC
Confidence 11111 111133455677788888899999999999999999999999999999999999999988887642 00 000
Q ss_pred c--hhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHc------------------
Q 008873 454 T--FYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA------------------ 513 (550)
Q Consensus 454 ~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~------------------ 513 (550)
. .-.-+.-|.+. |..-...=..| |.+|..|..++..+..+..+++...
T Consensus 188 ~rp~~~m~~~G~~D----------p~~p~~gG~~~--~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~ 255 (312)
T COG3509 188 PRPVSVMAFHGTAD----------PLNPYHGGGVP--IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDGTDY 255 (312)
T ss_pred CCchhHHHhcCCCC----------CCCCCCCCCcc--cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCccccee
Confidence 0 00000001111 11111111123 7777888777555555555554221
Q ss_pred -----CCCeEEEEcCCCCCcCCCCC-----------cHHHHHHHHHHHHHHh
Q 008873 514 -----RKPYEILIFPDERHMPRRHR-----------DRIYMEERIWEFIERT 549 (550)
Q Consensus 514 -----~~~~~~~~~p~~~H~~~~~~-----------~~~~~~~~~~~fl~~~ 549 (550)
+.++++..+.+.||.+.... ...+.-+.|.+||..+
T Consensus 256 ~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~ 307 (312)
T COG3509 256 DTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQH 307 (312)
T ss_pred eccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhc
Confidence 24678889999999864211 1123457788888765
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=124.97 Aligned_cols=203 Identities=18% Similarity=0.203 Sum_probs=130.7
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
..|.||++||-..+.. .|+.....|.+ .|+.|+++|..|.|.++..... ......+....+..+..
T Consensus 57 ~~~pvlllHGF~~~~~-------~w~~~~~~L~~~~~~~v~aiDl~G~g~~s~~~~~------~~y~~~~~v~~i~~~~~ 123 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSF-------SWRRVVPLLSKAKGLRVLAIDLPGHGYSSPLPRG------PLYTLRELVELIRRFVK 123 (326)
T ss_pred CCCcEEEeccccCCcc-------cHhhhccccccccceEEEEEecCCCCcCCCCCCC------CceehhHHHHHHHHHHH
Confidence 4578888999544322 23333444443 3799999999997733321111 11446666666666655
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEE---EcCCcCCccccc---------------------------ch
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV---SGAPVTSWDGYD---------------------------TF 455 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v---~~~~~~~~~~~~---------------------------~~ 455 (550)
+.. ..++.++|||+||++++.+|+.+|+.++.++ ...+........ ..
T Consensus 124 ~~~--~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 201 (326)
T KOG1454|consen 124 EVF--VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRL 201 (326)
T ss_pred hhc--CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhh
Confidence 532 2459999999999999999999999999999 444432210000 00
Q ss_pred hhhhcc------C-CCC---C--------------C----ccccc-----cCChhhhhhcCC-CcEEEEecCCCCCCChH
Q 008873 456 YTEKYM------G-LPS---E--------------D----PVGYE-----YSSVMHHVHKMK-GKLLLVHGMIDENVHFR 501 (550)
Q Consensus 456 ~~~~~~------g-~~~---~--------------~----~~~~~-----~~~~~~~~~~i~-~P~lii~G~~D~~v~~~ 501 (550)
+.+... . .+. + . .+.+. .......+.++. +|+||++|+.|..+|.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~ 281 (326)
T KOG1454|consen 202 VSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLE 281 (326)
T ss_pred eeHhhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHH
Confidence 000000 0 000 0 0 00000 023344566676 99999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 502 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+..+.+++ .++++.+++++||.. +.+..+.+...+..|+.++
T Consensus 282 ~~~~~~~~~----pn~~~~~I~~~gH~~-h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 282 LAEELKKKL----PNAELVEIPGAGHLP-HLERPEEVAALLRSFIARL 324 (326)
T ss_pred HHHHHHhhC----CCceEEEeCCCCccc-ccCCHHHHHHHHHHHHHHh
Confidence 776666554 678999999999988 4488899999999999875
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=147.72 Aligned_cols=210 Identities=16% Similarity=0.147 Sum_probs=130.2
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
..|+||++||.+++.. . |......|. .+|.|+++|+||+|.+................++++.+.+..+.++
T Consensus 1370 ~~~~vVllHG~~~s~~---~----w~~~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~ 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE---D----WIPIMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH 1441 (1655)
T ss_pred CCCeEEEECCCCCCHH---H----HHHHHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH
Confidence 3478999999776643 2 333455564 4699999999999977532110000001122355555555544443
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc----------c---c--------hhhhhccCC--
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----------D---T--------FYTEKYMGL-- 463 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~----------~---~--------~~~~~~~g~-- 463 (550)
- +.+++.|+||||||.+++.++.++|++++++++.++...+... . . .+...+...
T Consensus 1442 l--~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 1519 (1655)
T PLN02980 1442 I--TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGEL 1519 (1655)
T ss_pred h--CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHH
Confidence 2 4568999999999999999999999999999887654221100 0 0 000001000
Q ss_pred ---CCC---------------Cccc----cc------cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC-
Q 008873 464 ---PSE---------------DPVG----YE------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR- 514 (550)
Q Consensus 464 ---~~~---------------~~~~----~~------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~- 514 (550)
... +... +. ..+....+.++++|+|+++|++|..++ ..+.++.+.+....
T Consensus 1520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~ 1598 (1655)
T PLN02980 1520 WKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKE 1598 (1655)
T ss_pred hhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccc
Confidence 000 0000 00 011123467788999999999998775 56666766654320
Q ss_pred -------CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 515 -------KPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 515 -------~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
..++++++|++||.. ..++...+.+.+.+||.+
T Consensus 1599 ~~~~~~~~~a~lvvI~~aGH~~-~lE~Pe~f~~~I~~FL~~ 1638 (1655)
T PLN02980 1599 SGNDKGKEIIEIVEIPNCGHAV-HLENPLPVIRALRKFLTR 1638 (1655)
T ss_pred ccccccccceEEEEECCCCCch-HHHCHHHHHHHHHHHHHh
Confidence 126899999999987 457788899999999975
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-13 Score=127.39 Aligned_cols=219 Identities=16% Similarity=0.136 Sum_probs=125.4
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCC-CCceeecccccccchhHhHHHHhCC----cEEEEECCCCCCCCchhhHH
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGG-PCVQLVCDSWINTVDMRAQYLRSKG----ILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~~~~~l~~~G----~~vv~~d~rG~g~~~~~~~~ 382 (550)
|..+..++|.|++. ...+++|||+++||. ... ..+ ......+.+.+.| .++|+++..+.......+..
T Consensus 5 g~~~~~~VylP~~y-~~~~~~PvlylldG~~~~~----~~~--~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~ 77 (251)
T PF00756_consen 5 GRDRRVWVYLPPGY-DPSKPYPVLYLLDGQSGWF----RNG--NAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYL 77 (251)
T ss_dssp TEEEEEEEEECTTG-GTTTTEEEEEEESHTTHHH----HHH--HHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTS
T ss_pred CCeEEEEEEECCCC-CCCCCCEEEEEccCCcccc----ccc--hHHHHHHHHHHhCCCCceEEEEEeccccccccccccc
Confidence 56788999999986 344899999999994 111 111 1111223333433 55666665444311100000
Q ss_pred ------HHhhccCCCchHHH--HHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc
Q 008873 383 ------SIKHNCGRIDAEDQ--LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 383 ------~~~~~~~~~~~~D~--~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 454 (550)
......+...+.+. .+.+.++.++..+++.+.+|+|+||||+.|++++.++|+.|.++++.+|..+.. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~--~~ 155 (251)
T PF00756_consen 78 PAGSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS--PS 155 (251)
T ss_dssp SBCTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT--HC
T ss_pred ccccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc--cc
Confidence 00000000012222 255667777766676669999999999999999999999999999999886543 11
Q ss_pred hhhhhccCCCCCCccccccCChhhhh-----hcCCCcEEEEecCCCCCCC----------hHHHHHHHHHHHHcCCCeEE
Q 008873 455 FYTEKYMGLPSEDPVGYEYSSVMHHV-----HKMKGKLLLVHGMIDENVH----------FRHTARLINALVAARKPYEI 519 (550)
Q Consensus 455 ~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~i~~P~lii~G~~D~~v~----------~~~~~~~~~~l~~~~~~~~~ 519 (550)
.|.. .+.+.|...++.... ..-..++++..|+.|.... .....++.+.|+..+.+..+
T Consensus 156 ~w~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 228 (251)
T PF00756_consen 156 LWGP-------SDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGIPHTY 228 (251)
T ss_dssp HHHH-------STCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEECTTES
T ss_pred ccCc-------CCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCCCceE
Confidence 1111 112233333443333 2223578999999998332 12334444455556788888
Q ss_pred EEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 520 LIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 520 ~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
..++ ++|.... ....+...+.||
T Consensus 229 ~~~~-G~H~~~~---W~~~l~~~L~~~ 251 (251)
T PF00756_consen 229 HVFP-GGHDWAY---WRRRLPDALPWM 251 (251)
T ss_dssp EEEH-SESSHHH---HHHHHHHHHHHH
T ss_pred EEec-Cccchhh---HHHHHHHHHhhC
Confidence 8888 4676422 333444455543
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=123.76 Aligned_cols=210 Identities=14% Similarity=0.132 Sum_probs=128.8
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh
Q 008873 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 379 (550)
Q Consensus 300 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~ 379 (550)
.|.++. ..+..+.|.|.... ...+.||++||......+.+. . .-+.+.++|+++||.|+++|+||.|.+...
T Consensus 166 ~VV~~~---~~~eLi~Y~P~t~~---~~~~PlLiVp~~i~k~yilDL-~-p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~ 237 (532)
T TIGR01838 166 AVVFEN---ELFQLIQYEPTTET---VHKTPLLIVPPWINKYYILDL-R-PQNSLVRWLVEQGHTVFVISWRNPDASQAD 237 (532)
T ss_pred eEEEEC---CcEEEEEeCCCCCc---CCCCcEEEECcccccceeeec-c-cchHHHHHHHHCCcEEEEEECCCCCccccc
Confidence 455544 33566777776531 123445668985444332221 1 123468899999999999999998865432
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHH----HHhhC-CCeeEEEEEcCCcCCcccccc
Q 008873 380 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI----TLARF-PDVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 380 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~----~~~~~-~~~~~~~v~~~~~~~~~~~~~ 454 (550)
+. +.....+++.++++++.+.- +.+++.++|||+||.+++. ++..+ ++++++++..+...|+.....
T Consensus 238 ~~------~ddY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~ 309 (532)
T TIGR01838 238 KT------FDDYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGE 309 (532)
T ss_pred CC------hhhhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcch
Confidence 21 11223456888888887653 5678999999999998632 34444 778898888877666432100
Q ss_pred ----------------------------------------h---hhhhcc-CCCC--CCc--------------------
Q 008873 455 ----------------------------------------F---YTEKYM-GLPS--EDP-------------------- 468 (550)
Q Consensus 455 ----------------------------------------~---~~~~~~-g~~~--~~~-------------------- 468 (550)
. +...|+ |... .+.
T Consensus 310 l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr 389 (532)
T TIGR01838 310 LGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLR 389 (532)
T ss_pred hhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHH
Confidence 0 001111 1110 000
Q ss_pred cccccCC----------hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 469 VGYEYSS----------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 469 ~~~~~~~----------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
..|.++. ....+.+|++|+|+++|+.|.++|+..+..+.+.+ + ..+.++++++||..
T Consensus 390 ~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i---~-~~~~~vL~~sGHi~ 456 (532)
T TIGR01838 390 NLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALL---G-GPKTFVLGESGHIA 456 (532)
T ss_pred HHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHC---C-CCEEEEECCCCCch
Confidence 1111111 12356778899999999999999999888776654 3 34667889999974
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-13 Score=111.06 Aligned_cols=215 Identities=16% Similarity=0.183 Sum_probs=129.7
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEEC--CCCCCCCch-------
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLD--NRGTARRGL------- 378 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d--~rG~g~~~~------- 378 (550)
+..+..-+|.|+... ..++.|+|+++-|-.-.. +.|... ..+.+....+|++||.|| .||..-.|+
T Consensus 25 ~c~Mtf~vylPp~a~-~~k~~P~lf~LSGLTCT~---~Nfi~K-sg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG 99 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAP-RGKRCPVLFYLSGLTCTH---ENFIEK-SGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFG 99 (283)
T ss_pred ccceEEEEecCCCcc-cCCcCceEEEecCCcccc---hhhHhh-hhHHHhHhhcCeEEECCCCCCCccccCCCccccccc
Confidence 456777888997763 336799999999853321 222111 123556668999999999 455321111
Q ss_pred ---hh-HHHHhhccCC--CchHHHHHHHHHHHH--cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 379 ---KF-EASIKHNCGR--IDAEDQLTGAEWLIK--QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 379 ---~~-~~~~~~~~~~--~~~~D~~~~~~~l~~--~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
-| .++....|.. .++.-+..-+-.++. .-.+|+.+++|.||||||+-|+....++|.+++.+-+.+|+.+..
T Consensus 100 ~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~ 179 (283)
T KOG3101|consen 100 QGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPI 179 (283)
T ss_pred CCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcc
Confidence 11 1111111110 011111111111221 134899999999999999999999999999999999999998754
Q ss_pred ccc--chhhhhccCCCCCCccccccCChhhhhhcC---CCcEEEEecCCCCCCCh-HHHHHHHHHHHHcC-CCeEEEEcC
Q 008873 451 GYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHF-RHTARLINALVAAR-KPYEILIFP 523 (550)
Q Consensus 451 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~-~~~~~~~~~l~~~~-~~~~~~~~p 523 (550)
.-. ...-..|+|. +...|...++...+++. ..-+||-+|..|...+- --...+.++.+... .++.+..-+
T Consensus 180 ~cpWGqKAf~gYLG~---~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~~~v~~r~~~ 256 (283)
T KOG3101|consen 180 NCPWGQKAFTGYLGD---NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLAEQLLPENLLEACKATWQAPVVFRLQE 256 (283)
T ss_pred cCcchHHHhhcccCC---ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhhhhcChHHHHHHhhccccccEEEEeec
Confidence 321 1112234444 55556666655555544 45689999999987651 11234444444332 678888889
Q ss_pred CCCCcCC
Q 008873 524 DERHMPR 530 (550)
Q Consensus 524 ~~~H~~~ 530 (550)
+-.|+..
T Consensus 257 gyDHSYy 263 (283)
T KOG3101|consen 257 GYDHSYY 263 (283)
T ss_pred CCCccee
Confidence 9999863
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.1e-12 Score=105.42 Aligned_cols=212 Identities=16% Similarity=0.173 Sum_probs=137.2
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+.++...+..+-+.+... +..-++|++||--.... . ......+..+++.||.++.+|++|.|.+
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~t-------gs~e~vvlcHGfrS~Kn---~--~~~~~vA~~~e~~gis~fRfDF~GnGeS 76 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHET-------GSTEIVVLCHGFRSHKN---A--IIMKNVAKALEKEGISAFRFDFSGNGES 76 (269)
T ss_pred eeeEEEeccCCCchhhcceecc-------CCceEEEEeeccccccc---h--HHHHHHHHHHHhcCceEEEEEecCCCCc
Confidence 3455666666666665644432 23358899999432211 0 1123357778899999999999999988
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCc--eEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH--IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD- 453 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~--i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~- 453 (550)
...|.- -.+..+.+|+-..++++... +| -+|+|||-||-+++..+.++++ ++-.+..+|-.|....-
T Consensus 77 ~gsf~~----Gn~~~eadDL~sV~q~~s~~-----nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~ 146 (269)
T KOG4667|consen 77 EGSFYY----GNYNTEADDLHSVIQYFSNS-----NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGIN 146 (269)
T ss_pred CCcccc----CcccchHHHHHHHHHHhccC-----ceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchh
Confidence 765442 22345679999999998653 33 3589999999999999999877 46666666665543221
Q ss_pred ----chhhhhcc--C---CCC---CCccccccC--------ChhhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHH
Q 008873 454 ----TFYTEKYM--G---LPS---EDPVGYEYS--------SVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALV 511 (550)
Q Consensus 454 ----~~~~~~~~--g---~~~---~~~~~~~~~--------~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~ 511 (550)
..+.++.. | .+. .....+... +......+| +||+|-+||..|.+||.+.+.++++.+.
T Consensus 147 eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~ 226 (269)
T KOG4667|consen 147 ERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIP 226 (269)
T ss_pred hhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhcc
Confidence 11222111 1 111 011111111 111222334 4899999999999999999999988763
Q ss_pred HcCCCeEEEEcCCCCCcCCCCCc
Q 008873 512 AARKPYEILIFPDERHMPRRHRD 534 (550)
Q Consensus 512 ~~~~~~~~~~~p~~~H~~~~~~~ 534 (550)
..++.++|++.|.+...+.
T Consensus 227 ----nH~L~iIEgADHnyt~~q~ 245 (269)
T KOG4667|consen 227 ----NHKLEIIEGADHNYTGHQS 245 (269)
T ss_pred ----CCceEEecCCCcCccchhh
Confidence 3789999999999866444
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-12 Score=133.96 Aligned_cols=214 Identities=15% Similarity=0.045 Sum_probs=120.2
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH-
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS- 383 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~- 383 (550)
..+|..+++..+.+. +.|.||++||.+.+.. .|......| ..||.|+++|+||+|.+.......
T Consensus 9 ~~~g~~l~~~~~g~~-------~~~~ivllHG~~~~~~-------~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~~~~~ 73 (582)
T PRK05855 9 SSDGVRLAVYEWGDP-------DRPTVVLVHGYPDNHE-------VWDGVAPLL-ADRFRVVAYDVRGAGRSSAPKRTAA 73 (582)
T ss_pred eeCCEEEEEEEcCCC-------CCCeEEEEcCCCchHH-------HHHHHHHHh-hcceEEEEecCCCCCCCCCCCcccc
Confidence 357888887766432 2478999999765532 233455666 678999999999999875321110
Q ss_pred -HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCc-CCcc---------
Q 008873 384 -IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPV-TSWD--------- 450 (550)
Q Consensus 384 -~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~-~~~~--------- 450 (550)
.... ..+|+.++++.+ + . ..++.|+||||||.+++.++... +.++..++..++. .+..
T Consensus 74 ~~~~~----~a~dl~~~i~~l---~-~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 144 (582)
T PRK05855 74 YTLAR----LADDFAAVIDAV---S-P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLR 144 (582)
T ss_pred cCHHH----HHHHHHHHHHHh---C-C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhccc
Confidence 0111 134444444443 1 1 23499999999999998777652 3333333332211 1000
Q ss_pred -----cccch----hh----------------------h---hcc----CCCCCC-------------cccccc----CC
Q 008873 451 -----GYDTF----YT----------------------E---KYM----GLPSED-------------PVGYEY----SS 475 (550)
Q Consensus 451 -----~~~~~----~~----------------------~---~~~----g~~~~~-------------~~~~~~----~~ 475 (550)
..... .. . ... ..+... ...+.. ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (582)
T PRK05855 145 RPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSL 224 (582)
T ss_pred ccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhh
Confidence 00000 00 0 000 000000 000000 00
Q ss_pred hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 476 VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 476 ~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.......+++|+|+++|++|..+|+.....+.+.+ ...++++++ ++|.. ..++...+.+.+.+||.+
T Consensus 225 ~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~----~~~~~~~~~-~gH~~-~~e~p~~~~~~i~~fl~~ 291 (582)
T PRK05855 225 SRPRERYTDVPVQLIVPTGDPYVRPALYDDLSRWV----PRLWRREIK-AGHWL-PMSHPQVLAAAVAEFVDA 291 (582)
T ss_pred ccCccCCccCceEEEEeCCCcccCHHHhccccccC----CcceEEEcc-CCCcc-hhhChhHHHHHHHHHHHh
Confidence 00112347899999999999999988777665433 245666666 58987 356677888889999875
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=110.35 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=118.4
Q ss_pred EEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCC
Q 008873 312 YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRI 391 (550)
Q Consensus 312 ~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~ 391 (550)
...++.|... +.|||||++||-.- ...| +..+.+.++++||+||.+|.....+.. ...
T Consensus 5 ~l~v~~P~~~----g~yPVv~f~~G~~~----~~s~---Ys~ll~hvAShGyIVV~~d~~~~~~~~-----------~~~ 62 (259)
T PF12740_consen 5 PLLVYYPSSA----GTYPVVLFLHGFLL----INSW---YSQLLEHVASHGYIVVAPDLYSIGGPD-----------DTD 62 (259)
T ss_pred CeEEEecCCC----CCcCEEEEeCCcCC----CHHH---HHHHHHHHHhCceEEEEecccccCCCC-----------cch
Confidence 3467788764 68999999999542 2222 444678899999999999966533221 122
Q ss_pred chHHHHHHHHHHHHc--C------CCCCCceEEEEechhHHHHHHHHhhC-----CCeeEEEEEcCCcCCcccccchhhh
Q 008873 392 DAEDQLTGAEWLIKQ--G------LAKVGHIGLYGWSYGGYLSAITLARF-----PDVFQCAVSGAPVTSWDGYDTFYTE 458 (550)
Q Consensus 392 ~~~D~~~~~~~l~~~--~------~~d~~~i~i~G~S~GG~~a~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~ 458 (550)
+.++..+.++|+.+. . .+|-+||+|.|||.||.++..++..+ +.+|++++.+.|+........
T Consensus 63 ~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~---- 138 (259)
T PF12740_consen 63 EVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQ---- 138 (259)
T ss_pred hHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccC----
Confidence 367788888888763 1 25889999999999999999998876 458999999999853211100
Q ss_pred hccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCC--------CCh--HHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 459 KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDEN--------VHF--RHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 459 ~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~--------v~~--~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
..+..+.. . ...-+...|+|++-.+-... +-+ .+-.+|++++ ..+.-.++.++.||.
T Consensus 139 -------~~P~v~~~-~--p~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~---~~p~~~~v~~~~GH~ 205 (259)
T PF12740_consen 139 -------TEPPVLTY-T--PQSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDEC---KPPSWHFVAKDYGHM 205 (259)
T ss_pred -------CCCccccC-c--ccccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhc---CCCEEEEEeCCCCch
Confidence 00111110 0 11122347999987655532 222 3556777766 567777888999996
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=108.70 Aligned_cols=127 Identities=22% Similarity=0.173 Sum_probs=86.3
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~ 375 (550)
+.+.+.++..++ ++..++-.|.. ..-|++++.|||+.+.. .|..+++.+. .....|+++|.||+|.
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~-----t~gpil~l~HG~G~S~L-------SfA~~a~el~s~~~~r~~a~DlRgHGe 115 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA-----TEGPILLLLHGGGSSAL-------SFAIFASELKSKIRCRCLALDLRGHGE 115 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC-----CCccEEEEeecCcccch-------hHHHHHHHHHhhcceeEEEeeccccCc
Confidence 446677766554 67777777753 34599999999877754 3444566555 4567889999999998
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEc
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSG 443 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~ 443 (550)
+--+-+..+..+ -..+|+.+.++++-.. ++.+|+|+||||||.++.+.+... |. ..+++.+
T Consensus 116 Tk~~~e~dlS~e---T~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~vi 178 (343)
T KOG2564|consen 116 TKVENEDDLSLE---TMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVI 178 (343)
T ss_pred cccCChhhcCHH---HHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEE
Confidence 755444332211 1267888888777644 346799999999999998887643 44 3444443
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-12 Score=117.84 Aligned_cols=186 Identities=17% Similarity=0.233 Sum_probs=115.7
Q ss_pred hHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhh-
Q 008873 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR- 432 (550)
Q Consensus 355 ~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~- 432 (550)
...+.++||+|+++||.|-|. .|..... ......|.++|++.+... +.-...+++++|+|.||+.+++++..
T Consensus 19 l~~~L~~GyaVv~pDY~Glg~---~y~~~~~---~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~ 92 (290)
T PF03583_consen 19 LAAWLARGYAVVAPDYEGLGT---PYLNGRS---EAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELA 92 (290)
T ss_pred HHHHHHCCCEEEecCCCCCCC---cccCcHh---HHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHh
Confidence 556679999999999998875 3322111 112245555555555442 22234689999999999999887743
Q ss_pred ---CCCe---eEEEEEcCCcCCcccc------------------------cchh--hhh----------------cc---
Q 008873 433 ---FPDV---FQCAVSGAPVTSWDGY------------------------DTFY--TEK----------------YM--- 461 (550)
Q Consensus 433 ---~~~~---~~~~v~~~~~~~~~~~------------------------~~~~--~~~----------------~~--- 461 (550)
.|++ +.++++.+|+.|.... .... ... ..
T Consensus 93 ~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~ 172 (290)
T PF03583_consen 93 PSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADI 172 (290)
T ss_pred HHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHH
Confidence 2554 7888888887764210 0000 000 00
Q ss_pred --CCCCCCc-----cccccC-C-----h----h--hhh---hc--CCCcEEEEecCCCCCCChHHHHHHHHHHHHcC-CC
Q 008873 462 --GLPSEDP-----VGYEYS-S-----V----M--HHV---HK--MKGKLLLVHGMIDENVHFRHTARLINALVAAR-KP 516 (550)
Q Consensus 462 --g~~~~~~-----~~~~~~-~-----~----~--~~~---~~--i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~~ 516 (550)
....... ..+... + . + ..+ .+ -+.|++|.||..|+.||+....+++++++++| .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~ 252 (290)
T PF03583_consen 173 VAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGAD 252 (290)
T ss_pred HHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCC
Confidence 0000000 000000 0 0 0 011 11 24799999999999999999999999999999 79
Q ss_pred eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 517 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++++.++..+|...... .....++||...|
T Consensus 253 V~~~~~~~~~H~~~~~~----~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 253 VEYVRYPGGGHLGAAFA----SAPDALAWLDDRF 282 (290)
T ss_pred EEEEecCCCChhhhhhc----CcHHHHHHHHHHH
Confidence 99999999999753222 2356778887653
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-12 Score=108.31 Aligned_cols=217 Identities=16% Similarity=0.178 Sum_probs=130.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|.+|.+.-+-- ++ -.|+++.|.-++.. ..|.++. .+.....-+.||+.|.||.|.+-..-+.....
T Consensus 29 ng~ql~y~~~G~-------G~-~~iLlipGalGs~~--tDf~pql---~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ 95 (277)
T KOG2984|consen 29 NGTQLGYCKYGH-------GP-NYILLIPGALGSYK--TDFPPQL---LSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQ 95 (277)
T ss_pred cCceeeeeecCC-------CC-ceeEeccccccccc--ccCCHHH---HhcCCCCceEEEEECCCCCCCCCCCcccchHH
Confidence 456666654421 22 25666778555532 3444322 11222334999999999999875433322222
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-----cc-----chh
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-----YD-----TFY 456 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-----~~-----~~~ 456 (550)
.+ .+|...|++-+... +.+++.|+|||-||..|+.+|+++++.+.-.+..++..-... +. ..|
T Consensus 96 ff----~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kW 168 (277)
T KOG2984|consen 96 FF----MKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKW 168 (277)
T ss_pred HH----HHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhh
Confidence 22 46667777766554 457899999999999999999999987766665544321110 00 011
Q ss_pred hhhccCCCCCC---ccc----c----------c---c-CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 457 TEKYMGLPSED---PVG----Y----------E---Y-SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 457 ~~~~~g~~~~~---~~~----~----------~---~-~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
.++- ..|.++ ++. | . . .-.-..+.++++|+||+||+.|+.++-.+..-+ ..+ ..
T Consensus 169 s~r~-R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi-~~~---~~ 243 (277)
T KOG2984|consen 169 SARG-RQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFI-PVL---KS 243 (277)
T ss_pred hhhh-cchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccch-hhh---cc
Confidence 1110 111110 000 0 0 0 012234678999999999999999885544322 222 34
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
-.++.++|.+.|.+ .-...+++...+++||++.
T Consensus 244 ~a~~~~~peGkHn~-hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 244 LAKVEIHPEGKHNF-HLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred cceEEEccCCCcce-eeechHHHHHHHHHHHhcc
Confidence 56889999999998 4456778889999999863
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=118.60 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCC-----chhhHHHH-------h---hccC
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR-----GLKFEASI-------K---HNCG 389 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~-----~~~~~~~~-------~---~~~~ 389 (550)
.++|||||-||..+++. .+..++..||++||+|+++++|.. ... ...-.... . -.+.
T Consensus 98 ~~~PvvIFSHGlgg~R~-------~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRT-------SYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLR 170 (379)
T ss_dssp S-EEEEEEE--TT--TT-------TTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE--
T ss_pred CCCCEEEEeCCCCcchh-------hHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccc
Confidence 67999999999766654 345568899999999999999943 210 11000000 0 0000
Q ss_pred C---------------CchHHHHHHHHHHHHc--------------------CCCCCCceEEEEechhHHHHHHHHhhCC
Q 008873 390 R---------------IDAEDQLTGAEWLIKQ--------------------GLAKVGHIGLYGWSYGGYLSAITLARFP 434 (550)
Q Consensus 390 ~---------------~~~~D~~~~~~~l~~~--------------------~~~d~~~i~i~G~S~GG~~a~~~~~~~~ 434 (550)
. .-..|+..+++.|.+. +.+|.++|+++|||+||..++.++.+.
T Consensus 171 ~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d- 249 (379)
T PF03403_consen 171 DFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD- 249 (379)
T ss_dssp ---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-
Confidence 0 0144566667666531 346788999999999999999998875
Q ss_pred CeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 435 DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 435 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
.+|+|+|+..|..- |..+ ....+++.|+|+|+.+. .. ...+...+ +.+...+
T Consensus 250 ~r~~~~I~LD~W~~---------------Pl~~----------~~~~~i~~P~L~InSe~-f~-~~~~~~~~-~~~~~~~ 301 (379)
T PF03403_consen 250 TRFKAGILLDPWMF---------------PLGD----------EIYSKIPQPLLFINSES-FQ-WWENIFRM-KKVISNN 301 (379)
T ss_dssp TT--EEEEES---T---------------TS-G----------GGGGG--S-EEEEEETT-T---HHHHHHH-HTT--TT
T ss_pred cCcceEEEeCCccc---------------CCCc----------ccccCCCCCEEEEECcc-cC-ChhhHHHH-HHHhccC
Confidence 67899999876421 1110 11256788999998875 22 22222233 2344455
Q ss_pred CCeEEEEcCCCCCcC------CCC----------------CcHHHHHHHHHHHHHHhC
Q 008873 515 KPYEILIFPDERHMP------RRH----------------RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~------~~~----------------~~~~~~~~~~~~fl~~~l 550 (550)
....++.+.+..|.- ..+ .......+.+++||++||
T Consensus 302 ~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L 359 (379)
T PF03403_consen 302 KESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHL 359 (379)
T ss_dssp S-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999961 011 113445677899999875
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=104.78 Aligned_cols=229 Identities=17% Similarity=0.156 Sum_probs=143.1
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 380 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~ 380 (550)
..+...||..+.+.++...+. .+-.+.+-|+++... ..+..+++.++++||.|+++||||.|.+...-
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~~------~~g~~~va~a~Gv~~------~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~ 75 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADGK------ASGRLVVAGATGVGQ------YFYRRFAAAAAKAGFEVLTFDYRGIGQSRPAS 75 (281)
T ss_pred cccccCCCccCccccccCCCC------CCCcEEecccCCcch------hHhHHHHHHhhccCceEEEEecccccCCCccc
Confidence 567788999999998865543 233344556555422 13344578888999999999999999876543
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCC--cCCcccc------
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP--VTSWDGY------ 452 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~--~~~~~~~------ 452 (550)
.....-.+.+....|+-++++++.+.- ..-....+|||+||.+.-.+.. ++..-.+.+..++ ...|...
T Consensus 76 ~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~-~~k~~a~~vfG~gagwsg~m~~~~~l~~ 152 (281)
T COG4757 76 LSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQ-HPKYAAFAVFGSGAGWSGWMGLRERLGA 152 (281)
T ss_pred cccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccccc-CcccceeeEeccccccccchhhhhcccc
Confidence 332222233334788999999998742 2246789999999998765554 4532222222222 1111100
Q ss_pred --------------cchhhhhccCCCCCCc-------------cccccCCh-----hhhhhcCCCcEEEEecCCCCCCCh
Q 008873 453 --------------DTFYTEKYMGLPSEDP-------------VGYEYSSV-----MHHVHKMKGKLLLVHGMIDENVHF 500 (550)
Q Consensus 453 --------------~~~~~~~~~g~~~~~~-------------~~~~~~~~-----~~~~~~i~~P~lii~G~~D~~v~~ 500 (550)
......+.+|...+-+ ..|...+| ..-.+++++|++.+...+|+.+|+
T Consensus 153 ~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~ 232 (281)
T COG4757 153 VLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPP 232 (281)
T ss_pred eeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCH
Confidence 0111222333332211 11111122 234677899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCC----CCcCCCCCcHHHHHHHHHHHH
Q 008873 501 RHTARLINALVAARKPYEILIFPDE----RHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 501 ~~~~~~~~~l~~~~~~~~~~~~p~~----~H~~~~~~~~~~~~~~~~~fl 546 (550)
.....+.....+ .+.++..++.+ ||.-...+..+.+++++++||
T Consensus 233 As~d~f~~~y~n--Apl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 233 ASRDAFASFYRN--APLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHHhhhc--CcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 988888887654 46677777765 787544555578889999987
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=109.60 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=121.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEE-EEecCC--CceEEEEEECCCCceEEEEEeecCce
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQ-VLNRSQ--TKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~-~~~r~~--~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
.||.+++.+|+.++|+.. -+-+..+.+||||+.++| ...+.+ +..+||.++.++||+++||-. +.
T Consensus 60 dlWe~slk~g~~~ritS~---------lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyf-Gr-- 127 (668)
T COG4946 60 DLWEYSLKDGKPLRITSG---------LGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYF-GR-- 127 (668)
T ss_pred HHHHhhhccCCeeEEecc---------cceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEe-cc--
Confidence 379999999999999664 346778999999998888 333332 456899999999999999975 22
Q ss_pred eeccCccccCCCCCccCCCc-EEEEEcc----CCccEEEEEeCCCceeecccccC----------------------eE-
Q 008873 137 VNLHDCFTPLDKGVTKYSGG-FIWASEK----TGFRHLYLHDINGTCLGPITEGD----------------------WM- 188 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~~~s~~----~g~~~l~~~~~~~~~~~~lT~~~----------------------~~- 188 (550)
.|.-+. +|++|+ ++..+|- ..+..||.++.+|.+..+|.-|. |-
T Consensus 128 -----~fT~Va---G~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~ 199 (668)
T COG4946 128 -----RFTRVA---GWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKG 199 (668)
T ss_pred -----ccceee---ccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCccccc
Confidence 122222 566766 5555553 23567787777665433332211 00
Q ss_pred ----EEEEEeEee---------------------cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEE
Q 008873 189 ----VEQIVGVNE---------------------ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV 243 (550)
Q Consensus 189 ----~~~~~~~s~---------------------dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~ 243 (550)
..+..+.+. -|.++||.+..++. -+||.+++ +|+ ..++-|....+..
T Consensus 200 YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~--GnlYSvdl--dGk----DlrrHTnFtdYY~ 271 (668)
T COG4946 200 YKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGV--GNLYSVDL--DGK----DLRRHTNFTDYYP 271 (668)
T ss_pred ccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCc--cceEEecc--CCc----hhhhcCCchhccc
Confidence 001111111 24579999988775 68999999 775 4555555444444
Q ss_pred EEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 244 ~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
-..+.||+.++|...+ ++|++|.++.+
T Consensus 272 R~~nsDGkrIvFq~~G-----dIylydP~td~ 298 (668)
T COG4946 272 RNANSDGKRIVFQNAG-----DIYLYDPETDS 298 (668)
T ss_pred cccCCCCcEEEEecCC-----cEEEeCCCcCc
Confidence 4678899999998665 89999876554
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=102.82 Aligned_cols=211 Identities=13% Similarity=0.090 Sum_probs=140.1
Q ss_pred hhhcCCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEE
Q 008873 289 RIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL 368 (550)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~ 368 (550)
.+.+...++.+.+.+-. .|. -...+|.|.. ..|++|++|||.+...-... .. ..+..+..+||.|+.+
T Consensus 36 ~Lkn~~i~r~e~l~Yg~-~g~-q~VDIwg~~~------~~klfIfIHGGYW~~g~rk~---cl-siv~~a~~~gY~vasv 103 (270)
T KOG4627|consen 36 ELKNKQIIRVEHLRYGE-GGR-QLVDIWGSTN------QAKLFIFIHGGYWQEGDRKM---CL-SIVGPAVRRGYRVASV 103 (270)
T ss_pred HhhhccccchhccccCC-CCc-eEEEEecCCC------CccEEEEEecchhhcCchhc---cc-chhhhhhhcCeEEEEe
Confidence 44455566667766644 332 3356667654 34899999998665432221 11 1255677899999999
Q ss_pred CCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh-CCCeeEEEEEcCCcC
Q 008873 369 DNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVT 447 (550)
Q Consensus 369 d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~-~~~~~~~~v~~~~~~ 447 (550)
+|--+.. +.... ..+.++...++|+.+... ....+.+.|||.|+++++.+.++ +..++.+++..+|+.
T Consensus 104 gY~l~~q-~htL~---------qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY 172 (270)
T KOG4627|consen 104 GYNLCPQ-VHTLE---------QTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVY 172 (270)
T ss_pred ccCcCcc-cccHH---------HHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHh
Confidence 9864431 11111 126788999999988733 44568899999999999998886 356789999999987
Q ss_pred CcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 008873 448 SWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527 (550)
Q Consensus 448 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H 527 (550)
+.......-...-+|...++.+ .-...+.....++.|+|++.|+.|..--.+|.+.+...+.+ ..+..|++.+|
T Consensus 173 ~l~EL~~te~g~dlgLt~~~ae--~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~h 246 (270)
T KOG4627|consen 173 DLRELSNTESGNDLGLTERNAE--SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDH 246 (270)
T ss_pred hHHHHhCCccccccCcccchhh--hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcch
Confidence 7643322111122233222221 11223556788899999999999998888999999988744 56788999999
Q ss_pred c
Q 008873 528 M 528 (550)
Q Consensus 528 ~ 528 (550)
.
T Consensus 247 y 247 (270)
T KOG4627|consen 247 Y 247 (270)
T ss_pred h
Confidence 6
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-10 Score=108.28 Aligned_cols=228 Identities=17% Similarity=0.133 Sum_probs=130.8
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCC-
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD- 82 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~- 82 (550)
.....|||||++|||++.+ .||+.++.+++.++|+.+....-
T Consensus 45 ~~~~~~sP~g~~~~~v~~~-------------------------------------nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRDN-------------------------------------NLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp BSEEEE-SSSTEEEEEETT-------------------------------------EEEEESSTTSEEEESES--TTTEE
T ss_pred cccceeecCCCeeEEEecC-------------------------------------ceEEEECCCCCeEEeccccceeEE
Confidence 4567899999999998643 47999999998888887541110
Q ss_pred --CCC-------CCceeEEEEECCCCeEEEEEEecCCC--------------------------------ceEEEEEECC
Q 008873 83 --QNY-------DEEYLARVNWMHGNILTAQVLNRSQT--------------------------------KLKVLKFDIK 121 (550)
Q Consensus 83 --~~~-------~~~~~~~~~wspDg~~i~~~~~r~~~--------------------------------~~~l~~~~~~ 121 (550)
..+ .+ ....+-|||||+.|+|..-.... ...|++++++
T Consensus 88 nG~~dwvyeEEv~~-~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 88 NGVPDWVYEEEVFD-RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp ESB--HHHHHHTSS-SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred cCccceeccccccc-cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 000 01 12346799999988876422221 2245555665
Q ss_pred CCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEE-EEccC-CccEEEEEeCCCceeecccc---cCeE-EEEEE
Q 008873 122 TGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIW-ASEKT-GFRHLYLHDINGTCLGPITE---GDWM-VEQIV 193 (550)
Q Consensus 122 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~s~~~-g~~~l~~~~~~~~~~~~lT~---~~~~-~~~~~ 193 (550)
+++...+...... .+....+..+ .|.+++ +++ ..+|. ....|+++|..+++.+.+.. ..|. .....
T Consensus 167 ~~~~~~~~~~~~~--~~~~~yl~~v----~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~ 240 (353)
T PF00930_consen 167 SGKTTELDPPNSL--NPQDYYLTRV----GWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPP 240 (353)
T ss_dssp STCCCEE---HHH--HTSSEEEEEE----EEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEE
T ss_pred CCcEEEeeecccc--CCCccCcccc----eecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccc
Confidence 5554333221000 0000001111 344443 333 33443 34677888886665443332 2331 11122
Q ss_pred eEe-ecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEE-EEECCCCCEEEEeecCCC-CCCEEEEE
Q 008873 194 GVN-EASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHV-AVLDHNMRNFVDFHDSLD-SPPRILLC 269 (550)
Q Consensus 194 ~~s-~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~-~~~s~dg~~l~~~~s~~~-~p~~l~~~ 269 (550)
.+. ++++.+++.+.+++ ..|||.++. +++ .+++||.++. ... ..++++++.+.|+..... .-..||++
T Consensus 241 ~~~~~~~~~~l~~s~~~G--~~hly~~~~--~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 241 HFLGPDGNEFLWISERDG--YRHLYLYDL--DGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp EE-TTTSSEEEEEEETTS--SEEEEEEET--TSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred ccccCCCCEEEEEEEcCC--CcEEEEEcc--ccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 233 78889999988666 489999998 554 5779998764 323 478899999999877632 33689999
Q ss_pred EcCCCceeEeccCC
Q 008873 270 SLQDGSLVLPLYEQ 283 (550)
Q Consensus 270 ~~~~g~~~~~l~~~ 283 (550)
++.++..++.|+..
T Consensus 313 ~~~~~~~~~~LT~~ 326 (353)
T PF00930_consen 313 SLDSGGEPKCLTCE 326 (353)
T ss_dssp ETTETTEEEESSTT
T ss_pred EeCCCCCeEeccCC
Confidence 99724457888875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-11 Score=108.53 Aligned_cols=207 Identities=21% Similarity=0.219 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
-+|||+-|-...-. . .+-...+++.|...||.|+.+..+-+ .++|. ..+.. +.+|+..+++||....
T Consensus 34 ~~llfIGGLtDGl~-t---vpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~---~SL~~-----D~~eI~~~v~ylr~~~ 101 (303)
T PF08538_consen 34 NALLFIGGLTDGLL-T---VPYLPDLAEALEETGWSLFQVQLSSSYSGWGT---SSLDR-----DVEEIAQLVEYLRSEK 101 (303)
T ss_dssp SEEEEE--TT--TT-----STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S-----HHH-----HHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCCC-C---CchHHHHHHHhccCCeEEEEEEecCccCCcCc---chhhh-----HHHHHHHHHHHHHHhh
Confidence 47888877222110 0 01123356667778999999998863 55552 33333 3899999999999873
Q ss_pred --CCCCCceEEEEechhHHHHHHHHhhCC-----CeeEEEEEcCCcCCcccccchhh------h------hcc--CCCCC
Q 008873 408 --LAKVGHIGLYGWSYGGYLSAITLARFP-----DVFQCAVSGAPVTSWDGYDTFYT------E------KYM--GLPSE 466 (550)
Q Consensus 408 --~~d~~~i~i~G~S~GG~~a~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~------~------~~~--g~~~~ 466 (550)
.-..++|+|+|||-|..-++.++.... ..+.++|+.+|+.|......... + ... |.+.+
T Consensus 102 ~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~ 181 (303)
T PF08538_consen 102 GGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDE 181 (303)
T ss_dssp ------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-
T ss_pred ccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCc
Confidence 135689999999999999999987642 56899999999998654322111 0 000 11110
Q ss_pred -------------Cc-cccccC-------------------ChhhhhhcCCCcEEEEecCCCCCCChHH-HHHHHHHHHH
Q 008873 467 -------------DP-VGYEYS-------------------SVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINALVA 512 (550)
Q Consensus 467 -------------~~-~~~~~~-------------------~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~ 512 (550)
.+ ..++-. .....+.+++.|+|++.+++|+.||... -.++.++++.
T Consensus 182 ~lp~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~ 261 (303)
T PF08538_consen 182 ILPREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKA 261 (303)
T ss_dssp GG----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-----------------
T ss_pred eeeccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccc
Confidence 00 001100 1123466788899999999999999643 3455566654
Q ss_pred cCC----CeEEEEcCCCCCcCCCCCc---HHHHHHHHHHHHH
Q 008873 513 ARK----PYEILIFPDERHMPRRHRD---RIYMEERIWEFIE 547 (550)
Q Consensus 513 ~~~----~~~~~~~p~~~H~~~~~~~---~~~~~~~~~~fl~ 547 (550)
.-. ...-.++||++|.+..... .+.+.+++..||+
T Consensus 262 a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 262 ATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccCC
Confidence 432 2235589999999865443 4467888888874
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-11 Score=111.73 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=105.4
Q ss_pred cEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEE
Q 008873 363 ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 442 (550)
Q Consensus 363 ~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~ 442 (550)
|.|+++|.||.|.+... ....+......|+.+.++.+.++-.+ +++.++||||||.+++.++.++|++++++++
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 68999999999987631 11223344578899999998886433 4599999999999999999999999999999
Q ss_pred cCCcCC------cccccc-h-----------------------hh------hhcc-------------CCCCCC------
Q 008873 443 GAPVTS------WDGYDT-F-----------------------YT------EKYM-------------GLPSED------ 467 (550)
Q Consensus 443 ~~~~~~------~~~~~~-~-----------------------~~------~~~~-------------g~~~~~------ 467 (550)
.+++.. ...... . .. .+.. ......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 988510 000000 0 00 0000 000000
Q ss_pred ----ccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 468 ----PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 468 ----~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
...+...++.....++++|+|+++|+.|..+|+.....+.+.+ ...++++++++||..
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~----~~~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLI----PNSQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHS----TTEEEEEETTCCSTH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCCEEEECCCCChHH
Confidence 0001112223456678999999999999999998887755443 458999999999986
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-10 Score=124.63 Aligned_cols=230 Identities=13% Similarity=0.093 Sum_probs=133.2
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCC-CCCceEEEEEcCCCCceeeccccccc-chhHhHHHHhCCcEEEEECCCCCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYG-PPPYKTLISVYGGPCVQLVCDSWINT-VDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~-~~~~P~vv~~hGg~~~~~~~~~~~~~-~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
+..+.++. ..+..+.|.|...... +...|.||++||.+..... |... -..+...|.++||.|+++|+. .
T Consensus 39 p~~vv~~~---~~~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~~---~d~~~~~s~v~~L~~~g~~v~~~d~G---~ 109 (994)
T PRK07868 39 PFQIVESV---PMYRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSADM---WDVTRDDGAVGILHRAGLDPWVIDFG---S 109 (994)
T ss_pred CCcEEEEc---CcEEEEEeCCCCccccccCCCCcEEEECCCCCCccc---eecCCcccHHHHHHHCCCEEEEEcCC---C
Confidence 34455543 2355677777653110 1233678889997666542 2211 112368899999999999963 2
Q ss_pred CchhhHHHHhhccCCCchH----HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCcc
Q 008873 376 RGLKFEASIKHNCGRIDAE----DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~----D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~~ 450 (550)
++.... .. ...+. ++.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+++.+...|+.
T Consensus 110 ~~~~~~-----~~-~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~ 180 (994)
T PRK07868 110 PDKVEG-----GM-ERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTL 180 (994)
T ss_pred CChhHc-----Cc-cCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccC
Confidence 221100 00 11222 3344444443332 25799999999999998887644 56788887755443321
Q ss_pred cc-----------c----------------ch-----h--------hhhc------cCCCCC--C---------cccc--
Q 008873 451 GY-----------D----------------TF-----Y--------TEKY------MGLPSE--D---------PVGY-- 471 (550)
Q Consensus 451 ~~-----------~----------------~~-----~--------~~~~------~g~~~~--~---------~~~~-- 471 (550)
.. . .+ + ...+ +..+.. + .+.|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~ 260 (994)
T PRK07868 181 AALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIA 260 (994)
T ss_pred CCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccc
Confidence 00 0 00 0 0000 000000 0 0000
Q ss_pred --------------ccCChh----------hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEE-EEcCCCC
Q 008873 472 --------------EYSSVM----------HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI-LIFPDER 526 (550)
Q Consensus 472 --------------~~~~~~----------~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~-~~~p~~~ 526 (550)
..+... ..+.++++|+|+++|+.|.++|+..+..+.+.+ ...++ .+++++|
T Consensus 261 ~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i----~~a~~~~~~~~~G 336 (994)
T PRK07868 261 WSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAA----PNAEVYESLIRAG 336 (994)
T ss_pred cchHHHHHHHHHHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhC----CCCeEEEEeCCCC
Confidence 000010 135778899999999999999999998887654 23455 5678999
Q ss_pred CcC--CCCCcHHHHHHHHHHHHHHh
Q 008873 527 HMP--RRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 527 H~~--~~~~~~~~~~~~~~~fl~~~ 549 (550)
|.. ........++..+.+||.++
T Consensus 337 H~g~~~g~~a~~~~wp~i~~wl~~~ 361 (994)
T PRK07868 337 HFGLVVGSRAAQQTWPTVADWVKWL 361 (994)
T ss_pred CEeeeechhhhhhhChHHHHHHHHh
Confidence 973 56677888999999999875
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=96.85 Aligned_cols=150 Identities=13% Similarity=0.187 Sum_probs=79.4
Q ss_pred ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCC--c-cEEEEEeCCCceeeccccc-Ce
Q 008873 112 KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG--F-RHLYLHDINGTCLGPITEG-DW 187 (550)
Q Consensus 112 ~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g--~-~~l~~~~~~~~~~~~lT~~-~~ 187 (550)
...|+.|++++|+.+.|..+ ..|+.. ..|+|. +|..+.|..+... . .+||.++.+|+..+.|... ..
T Consensus 167 ~~~i~~idl~tG~~~~v~~~--~~wlgH-~~fsP~------dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~ 237 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFED--TDWLGH-VQFSPT------DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG 237 (386)
T ss_dssp -EEEEEEETTT--EEEEEEE--SS-EEE-EEEETT------EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT
T ss_pred CceEEEEECCCCceeEEEec--CccccC-cccCCC------CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC
Confidence 45788888888888777664 356653 445553 3444666665432 3 4899999999877766542 22
Q ss_pred EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCC-------
Q 008873 188 MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSL------- 260 (550)
Q Consensus 188 ~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~------- 260 (550)
+...--.|++||+.|+|.+...+...+.|+.+++. .+ +.+++...+....+..|+||+.++-=.++.
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~-t~-----~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~ 311 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD-TG-----ERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADA 311 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT-T-------EEEEEEE-SEEEEEE-TTSSEEEEEE----------
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCC-CC-----CceEEEeCCceeeeEEcCCCCEEEecCCCCCcccccc
Confidence 32333359999999999776444456788888883 22 334444333344456689998876544432
Q ss_pred -----CCCCEEEEEEcCCCce
Q 008873 261 -----DSPPRILLCSLQDGSL 276 (550)
Q Consensus 261 -----~~p~~l~~~~~~~g~~ 276 (550)
..-|-||+++.+.++.
T Consensus 312 ~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 312 GGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp ---------EEEEEETTTTEE
T ss_pred ccceecCCcEEEEeccccCce
Confidence 1124778888876653
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=107.10 Aligned_cols=129 Identities=15% Similarity=0.044 Sum_probs=88.8
Q ss_pred eEEEEEcC-CCcEEEEEEEcCCCCCC--CCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 299 DIVQIQAN-DGTVLYGALYKPDESRY--GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 299 ~~~~~~~~-~g~~l~~~~~~P~~~~~--~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
..+++... .+.++...++.|..... ...++|+|++-||.+... ..+.+.++.+++.||+|..++++|+..
T Consensus 39 ~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~~-------~~f~~~A~~lAs~Gf~Va~~~hpgs~~ 111 (365)
T COG4188 39 VTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSYV-------TGFAWLAEHLASYGFVVAAPDHPGSNA 111 (365)
T ss_pred EEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCCc-------cchhhhHHHHhhCceEEEeccCCCccc
Confidence 44444443 35678888999876531 013789999999954332 134557899999999999999999642
Q ss_pred CchhhHHHH----hhccCCCchHHHHHHHHHHHHc---C----CCCCCceEEEEechhHHHHHHHHhhCC
Q 008873 376 RGLKFEASI----KHNCGRIDAEDQLTGAEWLIKQ---G----LAKVGHIGLYGWSYGGYLSAITLARFP 434 (550)
Q Consensus 376 ~~~~~~~~~----~~~~~~~~~~D~~~~~~~l~~~---~----~~d~~~i~i~G~S~GG~~a~~~~~~~~ 434 (550)
-+.+-.... ..........|+...+++|++. + .+|..+|+++|||+||+.++.++..+.
T Consensus 112 ~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 112 GGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred ccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 221111111 1111123478899999999887 4 488999999999999999998886543
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=107.51 Aligned_cols=209 Identities=14% Similarity=0.080 Sum_probs=126.3
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
..|.++. ..+..+.|.|.... ..+.|+|| ++.--....+.+- .+ -+.+.++|.++|+.|+++|.+.-+....
T Consensus 192 g~VV~~n---~l~eLiqY~P~te~--v~~~PLLI-VPp~INK~YIlDL-~P-~~SlVr~lv~qG~~VflIsW~nP~~~~r 263 (560)
T TIGR01839 192 GAVVFRN---EVLELIQYKPITEQ--QHARPLLV-VPPQINKFYIFDL-SP-EKSFVQYCLKNQLQVFIISWRNPDKAHR 263 (560)
T ss_pred CceeEEC---CceEEEEeCCCCCC--cCCCcEEE-echhhhhhheeec-CC-cchHHHHHHHcCCeEEEEeCCCCChhhc
Confidence 4455554 23555677775431 13446655 5653222222111 12 2446899999999999999997553322
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHH----HHhhCCC-eeEEEEEcCCcCCccccc
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI----TLARFPD-VFQCAVSGAPVTSWDGYD 453 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~----~~~~~~~-~~~~~v~~~~~~~~~~~~ 453 (550)
.+ ...++ ++.+.+|++.+.+.. ...+|.++|+|+||.+++. +++.+++ +++.++..+...|+..-.
T Consensus 264 ~~---~ldDY----v~~i~~Ald~V~~~t--G~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g 334 (560)
T TIGR01839 264 EW---GLSTY----VDALKEAVDAVRAIT--GSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMES 334 (560)
T ss_pred CC---CHHHH----HHHHHHHHHHHHHhc--CCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCC
Confidence 11 11121 235667777776653 4578999999999999986 6666775 789988877766653100
Q ss_pred --c-----------------------------------------hhhhhc-cCCCC--CC-------------------c
Q 008873 454 --T-----------------------------------------FYTEKY-MGLPS--ED-------------------P 468 (550)
Q Consensus 454 --~-----------------------------------------~~~~~~-~g~~~--~~-------------------~ 468 (550)
. .+...| +|... .+ .
T Consensus 335 ~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l 414 (560)
T TIGR01839 335 PAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLL 414 (560)
T ss_pred cchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHH
Confidence 0 000011 11100 00 0
Q ss_pred cccccCChh-----------hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 469 VGYEYSSVM-----------HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 469 ~~~~~~~~~-----------~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
+.|..+... -++++|++|+|++.|+.|.++|+..+..+.+.+ +.+++++..++ ||.
T Consensus 415 ~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~---gs~~~fvl~~g-GHI 481 (560)
T TIGR01839 415 DMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLL---GGKRRFVLSNS-GHI 481 (560)
T ss_pred HHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHc---CCCeEEEecCC-Ccc
Confidence 112222211 146778999999999999999999999888766 44788888865 785
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.2e-10 Score=104.36 Aligned_cols=212 Identities=18% Similarity=0.087 Sum_probs=132.3
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCC--------------C--CCCCchhhHHHHhhcc-
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR--------------G--TARRGLKFEASIKHNC- 388 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~r--------------G--~g~~~~~~~~~~~~~~- 388 (550)
++.||++++||-.... ..+. ............|++++++|-. | ++.+.+ .....+
T Consensus 52 ~~ipV~~~l~G~t~~~---~~~~-~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d----~~~~~~~ 123 (316)
T COG0627 52 RDIPVLYLLSGLTCNE---PNVY-LLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSD----WTQPPWA 123 (316)
T ss_pred CCCCEEEEeCCCCCCC---CceE-eccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecc----cccCccc
Confidence 6789999999943321 1111 1222345566788888887422 2 111111 111100
Q ss_pred -CCCchHHHH--HHHHHHHHcCCCCC--CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-----------
Q 008873 389 -GRIDAEDQL--TGAEWLIKQGLAKV--GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----------- 452 (550)
Q Consensus 389 -~~~~~~D~~--~~~~~l~~~~~~d~--~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~----------- 452 (550)
+.....+++ +.-..+.+...++. ++.+|+|+||||+-|+.+|.++|++|+.+.+.+|+.+....
T Consensus 124 ~~~~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~ 203 (316)
T COG0627 124 SGPYQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPW 203 (316)
T ss_pred cCccchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccc
Confidence 011223322 12223333444455 38999999999999999999999999999999999876511
Q ss_pred cchhhhhccCCCCCCccccccCChhhhhhc--------------CCCcEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Q 008873 453 DTFYTEKYMGLPSEDPVGYEYSSVMHHVHK--------------MKGKLLLVHGMIDENVH--FRHTARLINALVAARKP 516 (550)
Q Consensus 453 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------i~~P~lii~G~~D~~v~--~~~~~~~~~~l~~~~~~ 516 (550)
.....+.++|.... ..+..+++...+++ ...++++-+|..|.... ......+.+++.+.|.+
T Consensus 204 g~~~~~~~~G~~~~--~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~ 281 (316)
T COG0627 204 GGKAFNAMLGPDSD--PAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIP 281 (316)
T ss_pred cCccHHHhcCCCcc--ccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCC
Confidence 11222233343322 24566666666554 34677888899887653 34478899999999999
Q ss_pred eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 517 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
..+..+++..|.+.. ....++..+.|+.+.|
T Consensus 282 ~~~~~~~~G~Hsw~~---w~~~l~~~~~~~a~~l 312 (316)
T COG0627 282 NGVRDQPGGDHSWYF---WASQLADHLPWLAGAL 312 (316)
T ss_pred ceeeeCCCCCcCHHH---HHHHHHHHHHHHHHHh
Confidence 999999999998743 4555677888887653
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=120.94 Aligned_cols=128 Identities=17% Similarity=0.204 Sum_probs=89.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CC-cEEEEECCC-CCCCCchhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KG-ILVWKLDNR-GTARRGLKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G-~~vv~~d~r-G~g~~~~~~~~~~~~~ 387 (550)
+...++.|.... ..+++||||++|||+........ . ....++. .+ ++||.++|| |.-++...... ..
T Consensus 79 l~l~i~~p~~~~-~~~~~pv~v~ihGG~~~~g~~~~----~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~ 148 (493)
T cd00312 79 LYLNVYTPKNTK-PGNSLPVMVWIHGGGFMFGSGSL----Y--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---EL 148 (493)
T ss_pred CeEEEEeCCCCC-CCCCCCEEEEEcCCccccCCCCC----C--ChHHHHhcCCCEEEEEecccccccccccCCCC---CC
Confidence 667888887532 12678999999999765432111 1 1334443 44 999999999 65544322211 12
Q ss_pred cCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCcCC
Q 008873 388 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 448 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~~~ 448 (550)
.+...+.|+..+++|+.+. ...|+++|.|+|+|+||+++..++.. .+.+|+++|+.+|...
T Consensus 149 ~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 149 PGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 2334489999999999875 34799999999999999999988875 2457999998887543
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=93.28 Aligned_cols=173 Identities=18% Similarity=0.162 Sum_probs=100.1
Q ss_pred EEEEcCCCCceeecccccccchhHhHHHHhCC--cEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 331 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 331 vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G--~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|+|+||-..+.. +.....+.+++++.+ ..+.+++.+-. .++.++.+..++++.
T Consensus 2 ilYlHGF~Ssp~-----S~Ka~~l~~~~~~~~~~~~~~~p~l~~~-------------------p~~a~~~l~~~i~~~- 56 (187)
T PF05728_consen 2 ILYLHGFNSSPQ-----SFKAQALKQYFAEHGPDIQYPCPDLPPF-------------------PEEAIAQLEQLIEEL- 56 (187)
T ss_pred eEEecCCCCCCC-----CHHHHHHHHHHHHhCCCceEECCCCCcC-------------------HHHHHHHHHHHHHhC-
Confidence 789999433321 112233456677766 45666666522 233444444454442
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCC--CCcccc-------ccCChhhh
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS--EDPVGY-------EYSSVMHH 479 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~-------~~~~~~~~ 479 (550)
.++.+.|+|.|+||+.|.+++.+++ +++ |+++|....... ...++|... ...+.| .....+..
T Consensus 57 -~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~----l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~ 128 (187)
T PF05728_consen 57 -KPENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYEL----LQDYIGEQTNPYTGESYELTEEHIEELKALEV 128 (187)
T ss_pred -CCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHH----HHHhhCccccCCCCccceechHhhhhcceEec
Confidence 2345999999999999999998774 234 777887653211 011122100 000111 11001110
Q ss_pred h-hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 480 V-HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 480 ~-~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
. ..-..++++++++.|+++++..+...++. ...++.+|++|.+.+ .......|++|+
T Consensus 129 ~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 129 PYPTNPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred cccCCCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 0 11235899999999999999777666542 344567888999854 666778888886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.8e-09 Score=90.69 Aligned_cols=210 Identities=17% Similarity=0.242 Sum_probs=114.5
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCCchh
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARRGLK 379 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~~~~ 379 (550)
..+...+|.+|..|.-.|.... +++.|.||...|-.... ..+..++.+|+.+||.|+.+|.--+ |.+...
T Consensus 5 hvi~~~~~~~I~vwet~P~~~~--~~~~~tiliA~Gf~rrm-------dh~agLA~YL~~NGFhViRyDsl~HvGlSsG~ 75 (294)
T PF02273_consen 5 HVIRLEDGRQIRVWETRPKNNE--PKRNNTILIAPGFARRM-------DHFAGLAEYLSANGFHVIRYDSLNHVGLSSGD 75 (294)
T ss_dssp EEEEETTTEEEEEEEE---TTS-----S-EEEEE-TT-GGG-------GGGHHHHHHHHTTT--EEEE---B--------
T ss_pred ceeEcCCCCEEEEeccCCCCCC--cccCCeEEEecchhHHH-------HHHHHHHHHHhhCCeEEEeccccccccCCCCC
Confidence 3456678999999999998742 35678888887743322 1345578999999999999997754 333322
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-cchhhh
Q 008873 380 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-DTFYTE 458 (550)
Q Consensus 380 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~ 458 (550)
..+..... ...|+..+++||.+.+ ..+++++.-|.-|-+|...+.+ .+ ..-+|...|+.+++.. ...+..
T Consensus 76 I~eftms~----g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~ 146 (294)
T PF02273_consen 76 INEFTMSI----GKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGY 146 (294)
T ss_dssp -----HHH----HHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS
T ss_pred hhhcchHH----hHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhcc
Confidence 22221111 1578899999999775 4689999999999999999985 45 4555555688887532 112222
Q ss_pred hccCCCCC----Cc--cc----------------cc-cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 459 KYMGLPSE----DP--VG----------------YE-YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 459 ~~~g~~~~----~~--~~----------------~~-~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
.|++.|.+ +. +. |. ..+-...++.+.+|++.+++.+|..|...+..++...+. ..
T Consensus 147 Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~--s~ 224 (294)
T PF02273_consen 147 DYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNIN--SN 224 (294)
T ss_dssp -GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-T--T-
T ss_pred chhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcC--CC
Confidence 23322211 00 00 00 113345678888999999999999999888888877652 34
Q ss_pred CeEEEEcCCCCCcCC
Q 008873 516 PYEILIFPDERHMPR 530 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~ 530 (550)
..++...+|+.|.+.
T Consensus 225 ~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 225 KCKLYSLPGSSHDLG 239 (294)
T ss_dssp -EEEEEETT-SS-TT
T ss_pred ceeEEEecCccchhh
Confidence 678889999999873
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-09 Score=82.88 Aligned_cols=185 Identities=19% Similarity=0.182 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCch-HHHHHHHHHHHHcC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDA-EDQLTGAEWLIKQG 407 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~-~D~~~~~~~l~~~~ 407 (550)
-+||+.||.+.+.. ++.+...+..|+.+|+.|+.++++-.-..-.. .. ....+.... ...+.++..|...
T Consensus 15 ~tilLaHGAGasmd-----St~m~~~a~~la~~G~~vaRfefpYma~Rrtg-~r--kPp~~~~t~~~~~~~~~aql~~~- 85 (213)
T COG3571 15 VTILLAHGAGASMD-----STSMTAVAAALARRGWLVARFEFPYMAARRTG-RR--KPPPGSGTLNPEYIVAIAQLRAG- 85 (213)
T ss_pred EEEEEecCCCCCCC-----CHHHHHHHHHHHhCceeEEEeecchhhhcccc-CC--CCcCccccCCHHHHHHHHHHHhc-
Confidence 46778899766643 22334457788999999999987532111000 00 000111111 2234444445443
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEc-CCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCc
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG-APVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 486 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P 486 (550)
.+..+++|-|+||||-++.+++..---.+.++++. .|+.. -|.|+.- -..|+..+++|
T Consensus 86 -l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------pGKPe~~--------Rt~HL~gl~tP 144 (213)
T COG3571 86 -LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------PGKPEQL--------RTEHLTGLKTP 144 (213)
T ss_pred -ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------CCCcccc--------hhhhccCCCCC
Confidence 36678999999999999999887532225666654 34321 1333221 13678889999
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC---------CcHHHHHHHHHHHHHH
Q 008873 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH---------RDRIYMEERIWEFIER 548 (550)
Q Consensus 487 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~---------~~~~~~~~~~~~fl~~ 548 (550)
+||.||+.|+.-...+...+ ....+.+++++.++.|.+... .+.....+.+..|...
T Consensus 145 tli~qGtrD~fGtr~~Va~y-----~ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 145 TLITQGTRDEFGTRDEVAGY-----ALSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred eEEeecccccccCHHHHHhh-----hcCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99999999987665544222 235689999999999987321 2334456667777653
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-09 Score=94.60 Aligned_cols=205 Identities=16% Similarity=0.068 Sum_probs=116.5
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhC----CcEEEEECCCCCC
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK----GILVWKLDNRGTA 374 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~----G~~vv~~d~rG~g 374 (550)
+.+.+.+.-..+....+|.|.+... ..|+||++++||-...+. ..-.. ....|... ..++|.+|+--.-
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy~~-~~k~pvl~~~DG~~~~~~-----g~i~~-~~dsli~~g~i~pai~vgid~~d~~ 142 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGYNP-LEKYPVLYLQDGQDWFRS-----GRIPR-ILDSLIAAGEIPPAILVGIDYIDVK 142 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCCCc-cccccEEEEeccHHHHhc-----CChHH-HHHHHHHcCCCCCceEEecCCCCHH
Confidence 4444443333445667777877643 379999999998432221 11111 23334433 4778888875321
Q ss_pred CCchhhHHHHhhccCCCch-HH-HHHHHHHHHHcC--CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 375 RRGLKFEASIKHNCGRIDA-ED-QLTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~-~D-~~~~~~~l~~~~--~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
.... ..... ..+ +. +.+.+-++.+.. .-+.++-+++|.|+||.++++++.++|++|.++++.+|..++.
T Consensus 143 ~R~~-----~~~~n--~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 143 KRRE-----ELHCN--EAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred HHHH-----Hhccc--HHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 1111 11111 001 11 112233444431 2456778899999999999999999999999999999987765
Q ss_pred cccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC
Q 008873 451 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530 (550)
Q Consensus 451 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~ 530 (550)
-.+..- +. +.....+..........-++..-++.+...+ ...++++.|+..+.++.+..|+| ||...
T Consensus 216 ~~~~~~--------~~--~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~~--pNr~L~~~L~~~g~~~~yre~~G-gHdw~ 282 (299)
T COG2382 216 PLDTQP--------QG--EVAESLKILHAIGTDERIVLTTGGEEGDFLR--PNRALAAQLEKKGIPYYYREYPG-GHDWA 282 (299)
T ss_pred cccccc--------cc--chhhhhhhhhccCccceEEeecCCccccccc--hhHHHHHHHHhcCCcceeeecCC-CCchh
Confidence 332210 00 0011111111122222323333344444444 55789999999999999999999 99763
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=99.15 Aligned_cols=205 Identities=18% Similarity=0.147 Sum_probs=125.3
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
.+.|.++.+||--++.. +|......|+ ..|--|+++|.|-+|.+...-. . + .....+|+...++...
T Consensus 50 ~~~Pp~i~lHGl~GS~~-------Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~---h-~-~~~ma~dv~~Fi~~v~ 117 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKE-------NWRSVAKNLSRKLGRDVYAVDVRNHGSSPKITV---H-N-YEAMAEDVKLFIDGVG 117 (315)
T ss_pred CCCCceEEecccccCCC-------CHHHHHHHhcccccCceEEEecccCCCCccccc---c-C-HHHHHHHHHHHHHHcc
Confidence 46688899999655532 3444566665 5688999999999987753211 0 0 1122566666666654
Q ss_pred HcCCCCCCceEEEEechhH-HHHHHHHhhCCCeeEEEEEc--CCc-CCcccc------------cch-------------
Q 008873 405 KQGLAKVGHIGLYGWSYGG-YLSAITLARFPDVFQCAVSG--APV-TSWDGY------------DTF------------- 455 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG-~~a~~~~~~~~~~~~~~v~~--~~~-~~~~~~------------~~~------------- 455 (550)
... -..++.|+|||||| .+++..+...|+.+.-+|+. +|. ...... +..
T Consensus 118 ~~~--~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~ 195 (315)
T KOG2382|consen 118 GST--RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKS 195 (315)
T ss_pred ccc--ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHH
Confidence 332 23578999999999 66666666778876555543 341 111000 000
Q ss_pred ------------hhhhccC-CCCCCcccc-----------c---cCChhhhh--hcCCCcEEEEecCCCCCCChHHHHHH
Q 008873 456 ------------YTEKYMG-LPSEDPVGY-----------E---YSSVMHHV--HKMKGKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 456 ------------~~~~~~g-~~~~~~~~~-----------~---~~~~~~~~--~~i~~P~lii~G~~D~~v~~~~~~~~ 506 (550)
|....+. .+.+....| . ..+.-..+ .....|+|+++|+++..++.++-.++
T Consensus 196 l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~ 275 (315)
T KOG2382|consen 196 LIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRM 275 (315)
T ss_pred HHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHH
Confidence 0000001 111110001 1 11111112 33457999999999999998877666
Q ss_pred HHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 507 INALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 507 ~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+.+ ..++++.++++||+. +-++.+.+.+.+.+|++++
T Consensus 276 ~~~f----p~~e~~~ld~aGHwV-h~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 276 EKIF----PNVEVHELDEAGHWV-HLEKPEEFIESISEFLEEP 313 (315)
T ss_pred HHhc----cchheeecccCCcee-ecCCHHHHHHHHHHHhccc
Confidence 5544 458999999999998 6688899999999998865
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=90.62 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=75.8
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+..+||-+||.|++.. .+..+...|.+.|+.++.+||+|+|........ ...-.+-...++.|.++
T Consensus 34 ~~gTVv~~hGsPGSH~-------DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~-------~~~n~er~~~~~~ll~~ 99 (297)
T PF06342_consen 34 PLGTVVAFHGSPGSHN-------DFKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQ-------QYTNEERQNFVNALLDE 99 (297)
T ss_pred CceeEEEecCCCCCcc-------chhhhhhHHHHcCeEEEEeCCCCCCCCCCCccc-------ccChHHHHHHHHHHHHH
Confidence 4568999999999854 445578899999999999999998865432211 11234455556666665
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
-.++ +++.++|||.|+-.|+.+++.+| ..++++.+|+
T Consensus 100 l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 100 LGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred cCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 4455 78999999999999999999885 3567776664
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-09 Score=100.60 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=159.0
Q ss_pred CCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccc--cchhHhHHHHhCCcEEEEECCC
Q 008873 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDMRAQYLRSKGILVWKLDNR 371 (550)
Q Consensus 294 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~~~~~l~~~G~~vv~~d~r 371 (550)
.-.+.|...+++.||..+..-.+ |... +++|+|++.||--.+.. .|-. .-...+-.|+.+||.|..-|.|
T Consensus 44 ~gy~~E~h~V~T~DgYiL~lhRI-p~~~----~~rp~Vll~HGLl~sS~---~Wv~n~p~~sLaf~LadaGYDVWLgN~R 115 (403)
T KOG2624|consen 44 YGYPVEEHEVTTEDGYILTLHRI-PRGK----KKRPVVLLQHGLLASSS---SWVLNGPEQSLAFLLADAGYDVWLGNNR 115 (403)
T ss_pred cCCceEEEEEEccCCeEEEEeee-cCCC----CCCCcEEEeeccccccc---cceecCccccHHHHHHHcCCceeeecCc
Confidence 34477999999999985554444 4432 57799999999543332 2311 1233567789999999999999
Q ss_pred CCCCCchh-----------hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC---ee
Q 008873 372 GTARRGLK-----------FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VF 437 (550)
Q Consensus 372 G~g~~~~~-----------~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~---~~ 437 (550)
|... .+. |-.....+ ...-|+-+.++++.+.. ..+++..+|||.|+.....++...|+ ++
T Consensus 116 Gn~y-Sr~h~~l~~~~~~~FW~FS~~E---m~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI 189 (403)
T KOG2624|consen 116 GNTY-SRKHKKLSPSSDKEFWDFSWHE---MGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKI 189 (403)
T ss_pred Cccc-chhhcccCCcCCcceeecchhh---hhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhh
Confidence 9543 222 22111222 23568899999998764 46799999999999999999988765 68
Q ss_pred EEEEEcCCcCCcccc----------------------------c-ch----h-----h-h------------hccC----
Q 008873 438 QCAVSGAPVTSWDGY----------------------------D-TF----Y-----T-E------------KYMG---- 462 (550)
Q Consensus 438 ~~~v~~~~~~~~~~~----------------------------~-~~----~-----~-~------------~~~g---- 462 (550)
+..++.+|+.-.... . .. + . . ...|
T Consensus 190 ~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~ 269 (403)
T KOG2624|consen 190 KSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSN 269 (403)
T ss_pred heeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchH
Confidence 888899887632200 0 00 0 0 0 0000
Q ss_pred -------------CCC---------------------------CCcccccc-CChhhhhhcCCCcEEEEecCCCCCCChH
Q 008873 463 -------------LPS---------------------------EDPVGYEY-SSVMHHVHKMKGKLLLVHGMIDENVHFR 501 (550)
Q Consensus 463 -------------~~~---------------------------~~~~~~~~-~~~~~~~~~i~~P~lii~G~~D~~v~~~ 501 (550)
.|. .+...|.. ..|...+.++++|+.+.+|.+|..+.++
T Consensus 270 ~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~ 349 (403)
T KOG2624|consen 270 NWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPE 349 (403)
T ss_pred hhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHH
Confidence 000 11222222 2456667888999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHHh
Q 008873 502 HTARLINALVAARKPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~~ 549 (550)
....+...+..... ...+.+++-+|. +.....++.+++.+++.+++.
T Consensus 350 DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 350 DVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLF 398 (403)
T ss_pred HHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhh
Confidence 98888777654433 233337888885 235567888999999988753
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-08 Score=89.42 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=77.8
Q ss_pred HHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhc
Q 008873 403 LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHK 482 (550)
Q Consensus 403 l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 482 (550)
+.++..++.++.+|+|||+||.+++.++..+|+.|.+.++.+|-.-|... ..............
T Consensus 128 Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n~----------------~~l~~~~~~~~~~~ 191 (264)
T COG2819 128 IEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNE----------------AILREIESLKLLKT 191 (264)
T ss_pred HhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCCH----------------HHhccccccccCCC
Confidence 33345588999999999999999999999999999999999986433211 11111111111112
Q ss_pred CCCcEEEEecCCCCCCC------hHHHHHHHHHHHH-cCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 483 MKGKLLLVHGMIDENVH------FRHTARLINALVA-ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 483 i~~P~lii~G~~D~~v~------~~~~~~~~~~l~~-~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+.-+++-.|+.|.... ..++.+....+++ .+....+..+|+++|+- .....+..+++|+.
T Consensus 192 ~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~----~~~~~~~~al~~l~ 259 (264)
T COG2819 192 KRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGS----VIHASLPSALRFLD 259 (264)
T ss_pred cceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccc----hHHHHHHHHHHhhh
Confidence 22334444555554222 3455555566666 67788899999888874 22334455666654
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.6e-09 Score=93.01 Aligned_cols=189 Identities=13% Similarity=0.180 Sum_probs=119.6
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch--------------hhHHH--HhhccC
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL--------------KFEAS--IKHNCG 389 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~--------------~~~~~--~~~~~~ 389 (550)
.|+|+|||-||-++++.+ +..+.-.||++||+|.++.+|-....-. +|... +..+-.
T Consensus 116 ~k~PvvvFSHGLggsRt~-------YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ek 188 (399)
T KOG3847|consen 116 DKYPVVVFSHGLGGSRTL-------YSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEK 188 (399)
T ss_pred CCccEEEEecccccchhh-------HHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCce
Confidence 799999999998787764 3335678999999999999997532110 00000 000000
Q ss_pred ---------CCchHHHHHHHHHHHHc---------------------CCCCCCceEEEEechhHHHHHHHHhhCCCeeEE
Q 008873 390 ---------RIDAEDQLTGAEWLIKQ---------------------GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 439 (550)
Q Consensus 390 ---------~~~~~D~~~~~~~l~~~---------------------~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~ 439 (550)
..-.+++..|++-|.+. +.+|..+++|+|||+||..++.+.+.+ ..|+|
T Consensus 189 ef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~Frc 267 (399)
T KOG3847|consen 189 EFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRC 267 (399)
T ss_pred eEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceee
Confidence 00134555555544331 246778899999999999999888864 56899
Q ss_pred EEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEE
Q 008873 440 AVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 519 (550)
Q Consensus 440 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 519 (550)
+|+..+.. .|-+ -.+..+++-|+|+|.-+ |- -..++....+++...+..-.+
T Consensus 268 aI~lD~WM---------------~Pl~----------~~~~~~arqP~~finv~-~f--Q~~en~~vmKki~~~n~g~~~ 319 (399)
T KOG3847|consen 268 AIALDAWM---------------FPLD----------QLQYSQARQPTLFINVE-DF--QWNENLLVMKKIESQNEGNHV 319 (399)
T ss_pred eeeeeeee---------------cccc----------hhhhhhccCCeEEEEcc-cc--cchhHHHHHHhhhCCCccceE
Confidence 99865320 0110 13456677899998833 22 233556666777666666678
Q ss_pred EEcCCCCCcC-C---------------------CCCcHHHHHHHHHHHHHHhC
Q 008873 520 LIFPDERHMP-R---------------------RHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 520 ~~~p~~~H~~-~---------------------~~~~~~~~~~~~~~fl~~~l 550 (550)
+++.|+=|.- . ..+..+...+..++||++|+
T Consensus 320 it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~ 372 (399)
T KOG3847|consen 320 ITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHL 372 (399)
T ss_pred EEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhh
Confidence 8888888841 1 01234556778899998875
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.6e-10 Score=106.92 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=88.2
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC-cEEEEECCCCC-CCC-chhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-ILVWKLDNRGT-ARR-GLKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G-~~vv~~d~rG~-g~~-~~~~~~~~~~~ 387 (550)
|...++.|... .++.|||||+|||..... ....+.++ ...|+++| ++||++|||-. -|+ ...........
T Consensus 80 L~LNIwaP~~~---a~~~PVmV~IHGG~y~~G--s~s~~~yd--gs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~ 152 (491)
T COG2272 80 LYLNIWAPEVP---AEKLPVMVYIHGGGYIMG--SGSEPLYD--GSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAF 152 (491)
T ss_pred eeEEeeccCCC---CCCCcEEEEEeccccccC--CCcccccC--hHHHHhcCCEEEEEeCcccccceeeehhhccccccc
Confidence 77788899822 267899999999865422 22222232 56788888 99999999942 111 10000000111
Q ss_pred cCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCCC---eeEEEEEcCCcCC
Q 008873 388 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSGAPVTS 448 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~~---~~~~~v~~~~~~~ 448 (550)
....-+.|++.+++|+.+. ..-|+++|.|+|.|.||+.++.+++. |. +|+-+|+.+|...
T Consensus 153 ~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 153 ASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 1223489999999999875 34599999999999999999988874 53 6777888777654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-07 Score=95.68 Aligned_cols=221 Identities=14% Similarity=0.095 Sum_probs=135.9
Q ss_pred eEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE-EEEcccCCCCCC
Q 008873 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQN 84 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~ 84 (550)
.+.|++||+.+.|++.+...... ..+....|+.+.+.++... .+-+.. .
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~-------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~-----~ 223 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTS-------------------------DSGYPRQVYRHKLGTPQSEDELVFEE-----P 223 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS--------------------------CCGCCEEEEEEETTS-GGG-EEEEC------T
T ss_pred eEEEeCCCCEEEEEEeCcccccc-------------------------cCCCCcEEEEEECCCChHhCeeEEee-----c
Confidence 48999999999999987643110 0111246788888876543 222210 1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC-----ceEEEEEeecCceeeccCccccCCCCCccCCCcEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-----QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIW 159 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (550)
+.......+.+|+||++++....+....+++|++++..+ +.+.|........... ...++.+++
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v-----------~~~~~~~yi 292 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV-----------DHHGDRLYI 292 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE-----------EEETTEEEE
T ss_pred CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE-----------EccCCEEEE
Confidence 112225678899999987776666655689999999986 5677665433322111 112455777
Q ss_pred EEccCC-ccEEEEEeCCCce---ee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC-CCCCCCCCe
Q 008873 160 ASEKTG-FRHLYLHDINGTC---LG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD-WNHTLEAPV 233 (550)
Q Consensus 160 ~s~~~g-~~~l~~~~~~~~~---~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~-g~~~~~~~~ 233 (550)
.++.++ +..|+.++++... .+ .|......+. +..++..+++|++....++ ...|..+++ . +. ...
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~Lvl~~~~~~--~~~l~v~~~--~~~~----~~~ 363 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-LEDVSLFKDYLVLSYRENG--SSRLRVYDL--DDGK----ESR 363 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-EEEEEEETTEEEEEEEETT--EEEEEEEET--T-TE----EEE
T ss_pred eeCCCCCCcEEEEecccccccccceeEEcCCCCcee-EEEEEEECCEEEEEEEECC--ccEEEEEEC--CCCc----EEe
Confidence 777643 6799999976643 22 3444333211 2246677889999988776 478888888 4 32 222
Q ss_pred eeCC-CCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 234 KLTN-GKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 234 ~lt~-~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
.+.. ..+ .......+++..+.|.+++..+|+.+|.+|+.+++.
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 3322 223 344455688899999999999999999999998874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=86.46 Aligned_cols=116 Identities=21% Similarity=0.268 Sum_probs=85.7
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 486 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P 486 (550)
..++.+||+|-|.|+||.++++++..++....+.....+...... . +.+. +. + ..+ ..|
T Consensus 88 ~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~------~---~~~~-----~~---~--~~~--~~~ 146 (206)
T KOG2112|consen 88 NGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS------I---GLPG-----WL---P--GVN--YTP 146 (206)
T ss_pred cCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch------h---hccC-----Cc---c--ccC--cch
Confidence 457899999999999999999999988666555555554422100 0 0000 00 0 000 679
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 487 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++..||+.|+.||..-..+..+.|+..+..+++..|++-+|.... +-+..+..|+.+
T Consensus 147 i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 147 ILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred hheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998733 334667777765
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.9e-09 Score=88.79 Aligned_cols=152 Identities=18% Similarity=0.104 Sum_probs=89.6
Q ss_pred EEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCC
Q 008873 331 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLA 409 (550)
Q Consensus 331 vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~ 409 (550)
|+++||..++.. +.|. ..+.+.|.+. +.|-.++.- .-++.+-+..|.+. ..+
T Consensus 1 v~IvhG~~~s~~--~HW~---~wl~~~l~~~-~~V~~~~~~---------------------~P~~~~W~~~l~~~i~~~ 53 (171)
T PF06821_consen 1 VLIVHGYGGSPP--DHWQ---PWLERQLENS-VRVEQPDWD---------------------NPDLDEWVQALDQAIDAI 53 (171)
T ss_dssp EEEE--TTSSTT--TSTH---HHHHHHHTTS-EEEEEC--T---------------------S--HHHHHHHHHHCCHC-
T ss_pred CEEeCCCCCCCc--cHHH---HHHHHhCCCC-eEEeccccC---------------------CCCHHHHHHHHHHHHhhc
Confidence 577899655532 4453 2235566566 777777761 11233333344433 223
Q ss_pred CCCceEEEEechhHHHHHHHH-hhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEE
Q 008873 410 KVGHIGLYGWSYGGYLSAITL-ARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLL 488 (550)
Q Consensus 410 d~~~i~i~G~S~GG~~a~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~l 488 (550)
| +.+.++|||.|+..++.++ .....+++++++++|+..-. .. .. ........+. ....+..|.+
T Consensus 54 ~-~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~--------~~-~~----~~~~~~f~~~-p~~~l~~~~~ 118 (171)
T PF06821_consen 54 D-EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDD--------PE-PF----PPELDGFTPL-PRDPLPFPSI 118 (171)
T ss_dssp T-TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGC--------HH-CC----TCGGCCCTTS-HCCHHHCCEE
T ss_pred C-CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccc--------cc-ch----hhhccccccC-cccccCCCeE
Confidence 3 4589999999999999999 66678999999999974310 00 00 0001111111 1122345669
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
++.+++|+.+|+..+.++.+++ ..+++.++++||..
T Consensus 119 viaS~nDp~vp~~~a~~~A~~l-----~a~~~~~~~~GHf~ 154 (171)
T PF06821_consen 119 VIASDNDPYVPFERAQRLAQRL-----GAELIILGGGGHFN 154 (171)
T ss_dssp EEEETTBSSS-HHHHHHHHHHH-----T-EEEEETS-TTSS
T ss_pred EEEcCCCCccCHHHHHHHHHHc-----CCCeEECCCCCCcc
Confidence 9999999999999999999988 45789999999975
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-08 Score=92.05 Aligned_cols=218 Identities=16% Similarity=0.074 Sum_probs=129.6
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHH-------HhCCcEEEEECCCCCC-CCchh-hHHHH----hhccCCCc
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-------RSKGILVWKLDNRGTA-RRGLK-FEASI----KHNCGRID 392 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l-------~~~G~~vv~~d~rG~g-~~~~~-~~~~~----~~~~~~~~ 392 (550)
.+-.+|+++|+-.+++.........-..+.+.+ .-.-|-|+++|.-|+. |+... -.... -.++....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 345799999997665544332111100012223 3345999999999875 33221 11111 12345567
Q ss_pred hHHHHHHHHHHHHcCCCCCCceE-EEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC---------------------cc
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---------------------WD 450 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~---------------------~~ 450 (550)
++|++.+-+.|.++-.| +++. ++|.||||+.++..+..+|+++..++.++...- |.
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n 206 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDWN 206 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCcc
Confidence 89999998888776434 4555 999999999999999999998887777665321 10
Q ss_pred ---ccc----------------------chhhhhccCC----CC------CCcccc------------------------
Q 008873 451 ---GYD----------------------TFYTEKYMGL----PS------EDPVGY------------------------ 471 (550)
Q Consensus 451 ---~~~----------------------~~~~~~~~g~----~~------~~~~~~------------------------ 471 (550)
++. ..+.+++-.. +. ...+.|
T Consensus 207 ~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~al 286 (368)
T COG2021 207 GGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRAL 286 (368)
T ss_pred CCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 000 0011111110 00 000111
Q ss_pred cc-------CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHH
Q 008873 472 EY-------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWE 544 (550)
Q Consensus 472 ~~-------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~ 544 (550)
.. .+....++++++|+|++--+.|-..|+++..++.++|...+. -..+-...||.-.- .....+...+..
T Consensus 287 d~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~--~~~i~S~~GHDaFL-~e~~~~~~~i~~ 363 (368)
T COG2021 287 DYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA--LREIDSPYGHDAFL-VESEAVGPLIRK 363 (368)
T ss_pred HhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc--eEEecCCCCchhhh-cchhhhhHHHHH
Confidence 00 122334777999999999999999999999999999977665 22333456886322 223345577788
Q ss_pred HHHH
Q 008873 545 FIER 548 (550)
Q Consensus 545 fl~~ 548 (550)
||+.
T Consensus 364 fL~~ 367 (368)
T COG2021 364 FLAL 367 (368)
T ss_pred Hhhc
Confidence 8764
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-08 Score=88.03 Aligned_cols=180 Identities=15% Similarity=0.129 Sum_probs=113.4
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccC
Q 008873 310 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCG 389 (550)
Q Consensus 310 ~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~ 389 (550)
..+..++.|... +.||+|+++||..-. +. .+....+.++++||+|++|+.-..-. .-+
T Consensus 32 PkpLlI~tP~~~----G~yPVilF~HG~~l~----ns---~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~ 89 (307)
T PF07224_consen 32 PKPLLIVTPSEA----GTYPVILFLHGFNLY----NS---FYSQLLAHIASHGFIVVAPQLYTLFP-----------PDG 89 (307)
T ss_pred CCCeEEecCCcC----CCccEEEEeechhhh----hH---HHHHHHHHHhhcCeEEEechhhcccC-----------CCc
Confidence 456677888764 789999999995322 11 23335677889999999999764311 123
Q ss_pred CCchHHHHHHHHHHHHc-----C---CCCCCceEEEEechhHHHHHHHHhhCC-C-eeEEEEEcCCcCCcccccchhhhh
Q 008873 390 RIDAEDQLTGAEWLIKQ-----G---LAKVGHIGLYGWSYGGYLSAITLARFP-D-VFQCAVSGAPVTSWDGYDTFYTEK 459 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~-----~---~~d~~~i~i~G~S~GG~~a~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~ 459 (550)
..++++..+.++||.+. + ..+..+++++|||.||..|..+|..+. + .|.++|-+.|+.......
T Consensus 90 ~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~------ 163 (307)
T PF07224_consen 90 QDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK------ 163 (307)
T ss_pred hHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC------
Confidence 34577788889998763 1 256789999999999999999998763 2 588888888875432110
Q ss_pred ccCCCCCCccccccCChhhhhhcCCCcEEEEecCCC-------CCCCh--HHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 460 YMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMID-------ENVHF--RHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 460 ~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D-------~~v~~--~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
+..+..+ .+.| +.=++..|+++|-..-- ..+.+ -+-.++++.++ .+...++-.+-||.
T Consensus 164 -----~t~P~iL-ty~p--~SF~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk---~p~~hfV~~dYGHm 230 (307)
T PF07224_consen 164 -----QTPPPIL-TYVP--QSFDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECK---PPCAHFVAKDYGHM 230 (307)
T ss_pred -----CCCCCee-ecCC--cccccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhc---ccceeeeecccccc
Confidence 0111110 0001 11134578888764333 11112 24567777763 56666677777886
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-09 Score=97.34 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=76.8
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhH-HHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
..|++|++||..+... ..|. ..+.+ ++...++.|+++|+++..... +...... . ....+++...+++|.+
T Consensus 35 ~~p~vilIHG~~~~~~--~~~~---~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~~~-~-~~v~~~la~~l~~L~~ 105 (275)
T cd00707 35 SRPTRFIIHGWTSSGE--ESWI---SDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAVNN-T-RVVGAELAKFLDFLVD 105 (275)
T ss_pred CCCcEEEEcCCCCCCC--CcHH---HHHHHHHHhcCCCEEEEEECccccccC--hHHHHHh-H-HHHHHHHHHHHHHHHH
Confidence 4588999999655431 2221 11233 445578999999999863221 1111110 0 0113567788888887
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
+..++.++|.++|||+||+++..++.+.+++++.++...|..
T Consensus 106 ~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 106 NTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred hcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 655677899999999999999999999999999999988764
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-07 Score=90.72 Aligned_cols=215 Identities=16% Similarity=0.181 Sum_probs=124.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+.+||||++|||.....+. ....|+++|+++|+...-.+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~-------------------------------e~~~l~v~Dl~tg~~l~d~i~------- 168 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGS-------------------------------EWYTLRVFDLETGKFLPDGIE------- 168 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTS-------------------------------SEEEEEEEETTTTEEEEEEEE-------
T ss_pred eeeeECCCCCEEEEEecCCCC-------------------------------ceEEEEEEECCCCcCcCCccc-------
Confidence 357799999999998655332 135789999999976532221
Q ss_pred CCCceeEEEEECCCCeEEEEEEecC-CC------ceEEEEEECCCCce--EEEEEeecCc--eeeccCccccCCCCCccC
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRS-QT------KLKVLKFDIKTGQR--KVILVEELDS--WVNLHDCFTPLDKGVTKY 153 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~-~~------~~~l~~~~~~~g~~--~~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (550)
.....++.|++||+.+++..... .. ..+||...+.++.. +.|..+.... +... ..+
T Consensus 169 --~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~-----------~~s 235 (414)
T PF02897_consen 169 --NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSV-----------SRS 235 (414)
T ss_dssp --EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEE-----------EE-
T ss_pred --ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEE-----------Eec
Confidence 11223389999999776664333 34 67899999988754 4666654432 2221 123
Q ss_pred CC-cEEEEEcc-CCc-cEEEEEeCCCc-----eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCC
Q 008873 154 SG-GFIWASEK-TGF-RHLYLHDINGT-----CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW 225 (550)
Q Consensus 154 ~~-~~~~~s~~-~g~-~~l~~~~~~~~-----~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g 225 (550)
.| ++++++.. ... ..+|++++..+ +.+.|....-.+... +...|+.+|+.++.+.+ ...|+++++.. .
T Consensus 236 ~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~--v~~~~~~~yi~Tn~~a~-~~~l~~~~l~~-~ 311 (414)
T PF02897_consen 236 KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY--VDHHGDRLYILTNDDAP-NGRLVAVDLAD-P 311 (414)
T ss_dssp TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE--EEEETTEEEEEE-TT-T-T-EEEEEETTS-T
T ss_pred CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE--EEccCCEEEEeeCCCCC-CcEEEEecccc-c
Confidence 44 36665433 334 79999998764 566776532222211 33347889999996554 58899999832 1
Q ss_pred CCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 226 NHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 226 ~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.........+...++..-..++..+++|++.... +.-++|.++++..+.
T Consensus 312 ~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 312 SPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE-NGSSRLRVYDLDDGK 360 (414)
T ss_dssp SGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE-TTEEEEEEEETT-TE
T ss_pred ccccceeEEcCCCCceeEEEEEEECCEEEEEEEE-CCccEEEEEECCCCc
Confidence 1000011223333332223455566778777665 344699999985244
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-09 Score=95.35 Aligned_cols=184 Identities=18% Similarity=0.167 Sum_probs=117.2
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
-++..+++.||.+|...++.-.....+ ....+||.+-|..+...+. ....=++.||.|+..|++|.+++.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~-ngq~LvIC~EGNAGFYEvG---------~m~tP~~lgYsvLGwNhPGFagST 283 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSG-NGQDLVICFEGNAGFYEVG---------VMNTPAQLGYSVLGWNHPGFAGST 283 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCC-CCceEEEEecCCccceEee---------eecChHHhCceeeccCCCCccccC
Confidence 467788889999888887754432222 2346888888865544332 123345789999999999987764
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh-
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY- 456 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~- 456 (550)
.... ...+...+.+.+++.++.-...++.|+|.|||.||+-++++|..+|+. +++|+-+.+-|........
T Consensus 284 G~P~-------p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdV-kavvLDAtFDDllpLAl~rM 355 (517)
T KOG1553|consen 284 GLPY-------PVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDV-KAVVLDATFDDLLPLALFRM 355 (517)
T ss_pred CCCC-------cccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCc-eEEEeecchhhhhhHHhhhc
Confidence 3211 223355566778887776334678899999999999999999999995 9999888776643211100
Q ss_pred hhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCC
Q 008873 457 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVH 499 (550)
Q Consensus 457 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~ 499 (550)
...+.|.-......+-..+..+.+.+.+.|+++|--++|+++.
T Consensus 356 P~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 356 PTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 0000000000011122233345667778899999888887653
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-08 Score=91.74 Aligned_cols=222 Identities=20% Similarity=0.255 Sum_probs=130.7
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh--hHHH-----
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK--FEAS----- 383 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~--~~~~----- 383 (550)
.+..++.|..- ..++.|++|.+.|.+... |.-+...++.-|.+.|++.+.+..+-+|..-.. ....
T Consensus 77 a~~~~~~P~~~--~~~~rp~~IhLagTGDh~-----f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~Vs 149 (348)
T PF09752_consen 77 ARFQLLLPKRW--DSPYRPVCIHLAGTGDHG-----FWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVS 149 (348)
T ss_pred eEEEEEECCcc--ccCCCceEEEecCCCccc-----hhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchh
Confidence 44556667653 124679999999854432 112334457777888999998876655433211 0000
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC--------------c
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS--------------W 449 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~--------------~ 449 (550)
-.-.+|...+.+....++|+.++++ .+++|.|.||||.+|..+++..|..+.++-+.++.+. |
T Consensus 150 Dl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W 226 (348)
T PF09752_consen 150 DLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINW 226 (348)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCH
Confidence 0112334457788888999999864 5999999999999999999998887666655554322 2
Q ss_pred ccccc-----hhhhhccCCCCC--------------Ccccc----ccCChhhhhhcCCC-----cEEEEecCCCCCCChH
Q 008873 450 DGYDT-----FYTEKYMGLPSE--------------DPVGY----EYSSVMHHVHKMKG-----KLLLVHGMIDENVHFR 501 (550)
Q Consensus 450 ~~~~~-----~~~~~~~g~~~~--------------~~~~~----~~~~~~~~~~~i~~-----P~lii~G~~D~~v~~~ 501 (550)
..... .|.+.....+.. +.+.. ....-..++.++.+ .+.++.+++|..||..
T Consensus 227 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~ 306 (348)
T PF09752_consen 227 DALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRH 306 (348)
T ss_pred HHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechh
Confidence 11110 111110000000 00000 00111233444443 4678889999999987
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 502 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+...+.+.. ...++..+++ ||.-..-.+...+-+.|.+=|+
T Consensus 307 ~v~~Lq~~W----PGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 307 GVLSLQEIW----PGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hcchHHHhC----CCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 766555443 4567777877 9975444556666777777654
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=88.50 Aligned_cols=99 Identities=21% Similarity=0.191 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhC--CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~--G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
|.|+++||.+.... .|.. ....+... .|.|+.+|.||+|.+. .. ..........+..+.++
T Consensus 22 ~~i~~~hg~~~~~~---~~~~----~~~~~~~~~~~~~~~~~d~~g~g~s~-~~---------~~~~~~~~~~~~~~~~~ 84 (282)
T COG0596 22 PPLVLLHGFPGSSS---VWRP----VFKVLPALAARYRVIAPDLRGHGRSD-PA---------GYSLSAYADDLAALLDA 84 (282)
T ss_pred CeEEEeCCCCCchh---hhHH----HHHHhhccccceEEEEecccCCCCCC-cc---------cccHHHHHHHHHHHHHH
Confidence 48899999876543 2211 11222221 1999999999998776 00 00111122333333332
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
- ...++.++|||+||.+++.++.++|+.+++++..++.
T Consensus 85 ~--~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~ 122 (282)
T COG0596 85 L--GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPA 122 (282)
T ss_pred h--CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCC
Confidence 2 2234999999999999999999999999999888754
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-09 Score=109.38 Aligned_cols=127 Identities=18% Similarity=0.177 Sum_probs=82.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC--C--CCchhhHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT--A--RRGLKFEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~--g--~~~~~~~~~~~~ 386 (550)
|...++.|...... .++||+|++|||....... ..........++.++++||.++||-. | ..+..-. .
T Consensus 109 L~LnI~~P~~~~~~-~~lPV~v~ihGG~f~~G~~---~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~---~- 180 (535)
T PF00135_consen 109 LYLNIYTPSNASSN-SKLPVMVWIHGGGFMFGSG---SFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDA---P- 180 (535)
T ss_dssp -EEEEEEETSSSST-TSEEEEEEE--STTTSSCT---TSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTS---H-
T ss_pred HHHhhhhccccccc-cccceEEEeecccccCCCc---ccccccccccccCCCEEEEEeccccccccccccccccc---C-
Confidence 77888999876422 3799999999986654311 00112224567789999999999942 1 1110000 0
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCc
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPV 446 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~ 446 (550)
.++..+.|+..|++|+.+. -.-|+++|.|+|+|.||..+...+..- ..+|+.+|+.+|.
T Consensus 181 -~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 181 -SGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp -BSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred -chhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 2444589999999999885 335999999999999999998777642 3689999998883
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-07 Score=88.67 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=90.1
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
..|.++|.++++.+++.- .-+.+..+.-|||||.++...+| .+||++|+++|+++.+...... -+-
T Consensus 382 D~l~iyd~~~~e~kr~e~---------~lg~I~av~vs~dGK~~vvaNdr----~el~vididngnv~~idkS~~~-lIt 447 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEK---------DLGNIEAVKVSPDGKKVVVANDR----FELWVIDIDNGNVRLIDKSEYG-LIT 447 (668)
T ss_pred ceEEEEecCCceEEEeeC---------CccceEEEEEcCCCcEEEEEcCc----eEEEEEEecCCCeeEecccccc-eeE
Confidence 468899999999887732 24567889999999988777544 5799999999999887654322 111
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCc--cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGF--RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~--~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
. | .|++++ ++..+-..|+ ++|-++|+++++.-.+|...-..-.+ .++|||+.|||.+.+
T Consensus 448 d---f-------~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP-aFD~d~ryLYfLs~R 509 (668)
T COG4946 448 D---F-------DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP-AFDPDGRYLYFLSAR 509 (668)
T ss_pred E---E-------EEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc-ccCCCCcEEEEEecc
Confidence 0 1 244444 4444444664 68899999999988888764333344 499999999999985
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-07 Score=81.85 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc--
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-- 406 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-- 406 (550)
-++.+-|-|+++.. ...| ...|.. .+.++.+.++|.+..- +.-...|+...++.|...
T Consensus 9 ~L~cfP~AGGsa~~-fr~W-------~~~lp~-~iel~avqlPGR~~r~-----------~ep~~~di~~Lad~la~el~ 68 (244)
T COG3208 9 RLFCFPHAGGSASL-FRSW-------SRRLPA-DIELLAVQLPGRGDRF-----------GEPLLTDIESLADELANELL 68 (244)
T ss_pred eEEEecCCCCCHHH-HHHH-------HhhCCc-hhheeeecCCCccccc-----------CCcccccHHHHHHHHHHHhc
Confidence 45555566654432 2222 333333 5889999999887431 122256667777766654
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhC------CCeeEEEEEcCCcCCcccc-----cchhhh---hccCCCC---CCcc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDGY-----DTFYTE---KYMGLPS---EDPV 469 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~------~~~~~~~v~~~~~~~~~~~-----~~~~~~---~~~g~~~---~~~~ 469 (550)
+..-....+++||||||++|.-+|.+. |..+-...+.+|..+.... +..+.+ .+.|.|. ++++
T Consensus 69 ~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p~e~led~E 148 (244)
T COG3208 69 PPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLEDPE 148 (244)
T ss_pred cccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCChHHhcCHH
Confidence 122235799999999999999888642 2222222223342221110 111111 2234442 2333
Q ss_pred ccccCChh-----------h--hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHH
Q 008873 470 GYEYSSVM-----------H--HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536 (550)
Q Consensus 470 ~~~~~~~~-----------~--~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~ 536 (550)
...-.-|+ . .-..+.+|+.++.|++|..|..++...+.+.. +..+++..|+| +|.+.. ....
T Consensus 149 l~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t---~~~f~l~~fdG-gHFfl~-~~~~ 223 (244)
T COG3208 149 LMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHT---KGDFTLRVFDG-GHFFLN-QQRE 223 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhh---cCCceEEEecC-cceehh-hhHH
Confidence 22111111 1 11457799999999999998877666665544 56899999988 898733 4555
Q ss_pred HHHHHHHHHHH
Q 008873 537 YMEERIWEFIE 547 (550)
Q Consensus 537 ~~~~~~~~fl~ 547 (550)
++...+.+.+.
T Consensus 224 ~v~~~i~~~l~ 234 (244)
T COG3208 224 EVLARLEQHLA 234 (244)
T ss_pred HHHHHHHHHhh
Confidence 56666665553
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.3e-06 Score=77.86 Aligned_cols=116 Identities=12% Similarity=0.230 Sum_probs=72.7
Q ss_pred CcEEEEEccCCccEEEEEeCCCceee------ccccc----CeEEE--EEEeEeecCCEEEEEEcCCC-----CceeEEE
Q 008873 155 GGFIWASEKTGFRHLYLHDINGTCLG------PITEG----DWMVE--QIVGVNEASGQVYFTGTLDG-----PLESHLY 217 (550)
Q Consensus 155 ~~~~~~s~~~g~~~l~~~~~~~~~~~------~lT~~----~~~~~--~~~~~s~dg~~l~f~~~~~~-----~~~~~l~ 217 (550)
++.+|+|.. ..|+.+|+.+.+.. .+|.+ .|.-. ++..+++||+++|+...... ....+|+
T Consensus 206 g~~~~vs~e---G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 206 GRLVWPTYT---GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CcEEEEecC---CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 347777765 57888886554322 22221 22211 23568999999998654211 1235899
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.+|.. .+. ...++.-+.....+.+|||++.++++.+.. ...+.++|..+++.++.+
T Consensus 283 ViD~~-t~k----vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 283 VVDAK-TGK----RLRKIELGHEIDSINVSQDAKPLLYALSTG--DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEECC-CCe----EEEEEeCCCceeeEEECCCCCeEEEEeCCC--CCcEEEEECcCCeEEeee
Confidence 99983 222 455566566678889999999555655432 236899999888877665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-08 Score=95.78 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=75.0
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHH-h-CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-S-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~-~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
..|++|++||...... ...|... +.+.|. . ..+.|+++|++|.+.+... .+.... .....++.+.+++|.
T Consensus 40 ~~ptvIlIHG~~~s~~-~~~w~~~---l~~al~~~~~d~nVI~VDw~g~g~s~y~--~a~~~t--~~vg~~la~lI~~L~ 111 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGM-FESWVPK---LVAALYEREPSANVIVVDWLSRAQQHYP--TSAAYT--KLVGKDVAKFVNWMQ 111 (442)
T ss_pred CCCeEEEECCCCcCCc-chhhHHH---HHHHHHhccCCCEEEEEECCCcCCCCCc--cccccH--HHHHHHHHHHHHHHH
Confidence 4588999999654321 1223211 233332 2 3699999999998754311 111000 011356777788887
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
++..++.+++.|+||||||+++..++...|.++..++...|..
T Consensus 112 ~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 112 EEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred HhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 6544677899999999999999999998899999999988763
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-08 Score=88.36 Aligned_cols=175 Identities=16% Similarity=0.081 Sum_probs=87.3
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC--CCchh---------h-HHHHhhccCC----
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA--RRGLK---------F-EASIKHNCGR---- 390 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g--~~~~~---------~-~~~~~~~~~~---- 390 (550)
+++-|+.+||...+..+ |..+...+...|.+.++..+.+|.+-.- +.+.. + .......|..
T Consensus 3 ~k~riLcLHG~~~na~i---f~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEI---FRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD 79 (212)
T ss_dssp ---EEEEE--TT--HHH---HHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-
T ss_pred CCceEEEeCCCCcCHHH---HHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC
Confidence 34788999997665442 2233444455665658999999866322 11110 0 0111112222
Q ss_pred -CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC--------CCeeEEEEEcCCcCCcccccchhhhhcc
Q 008873 391 -IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPVTSWDGYDTFYTEKYM 461 (550)
Q Consensus 391 -~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 461 (550)
....++.++++++.+.-.-+..-.+|+|+|+||.+|..++... ...|+.+|+.+++......
T Consensus 80 ~~~~~~~~~sl~~l~~~i~~~GPfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------- 150 (212)
T PF03959_consen 80 DHEYEGLDESLDYLRDYIEENGPFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------- 150 (212)
T ss_dssp SGGG---HHHHHHHHHHHHHH---SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----------
T ss_pred cccccCHHHHHHHHHHHHHhcCCeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---------
Confidence 2255666666666553100111368999999999998887531 2357888888876431100
Q ss_pred CCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 462 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 462 g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
+.. .....++++|+|-++|.+|..++++.+..+++.+... .+++..++ ||.+
T Consensus 151 ---------~~~---~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g-GH~v 202 (212)
T PF03959_consen 151 ---------YQE---LYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG-GHHV 202 (212)
T ss_dssp ---------GTT---TT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS-SSS-
T ss_pred ---------hhh---hhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC-CCcC
Confidence 000 1134567899999999999999999999999988664 66777766 7776
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.9e-08 Score=92.12 Aligned_cols=78 Identities=27% Similarity=0.370 Sum_probs=63.4
Q ss_pred cccCChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH--HHHHHHHHHHHH
Q 008873 471 YEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR--IYMEERIWEFIE 547 (550)
Q Consensus 471 ~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~--~~~~~~~~~fl~ 547 (550)
+...++...+.++. +|+|++||..|..||...+..++.+.... +.+.+.+++++|........ ...+.++.+||.
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~ 295 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLE 295 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHH
Confidence 44556666777787 69999999999999999999999987554 67888899999998643333 478999999999
Q ss_pred HhC
Q 008873 548 RTL 550 (550)
Q Consensus 548 ~~l 550 (550)
++|
T Consensus 296 ~~l 298 (299)
T COG1073 296 RHL 298 (299)
T ss_pred Hhc
Confidence 875
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-07 Score=87.87 Aligned_cols=71 Identities=20% Similarity=0.134 Sum_probs=58.3
Q ss_pred hhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcC-CCeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHHh
Q 008873 479 HVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 479 ~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++|+ +|+|.+.|+.|.++|+.++..+.+.+...+ .+.+.+..+++||. |.+...+.+.+..+.+||.++
T Consensus 332 dl~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 332 DPGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred cHHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 356688 999999999999999999999988764333 24567778888996 467788889999999999864
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-06 Score=74.82 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=85.2
Q ss_pred ceEEEcCCCCeEEEEEEeC-CCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDS-SEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.+-|+|+|++|+.....+ .+... .. | ....|+.++..+.....+.+.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~k---s~------~----------------~~~~l~~~~~~~~~~~~i~l~------ 57 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGK---SY------Y----------------GEFELFYLNEKNIPVESIELK------ 57 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcc---eE------E----------------eeEEEEEEecCCCccceeecc------
Confidence 4577999999999977522 11100 00 0 236788888888777766552
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEc
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASE 162 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 162 (550)
....+..++|||+|+.++.+...... .+-+.++++ +.+....... .+. ..|+|++ ++.+..
T Consensus 58 --~~~~I~~~~WsP~g~~favi~g~~~~--~v~lyd~~~---~~i~~~~~~~-~n~----------i~wsP~G~~l~~~g 119 (194)
T PF08662_consen 58 --KEGPIHDVAWSPNGNEFAVIYGSMPA--KVTLYDVKG---KKIFSFGTQP-RNT----------ISWSPDGRFLVLAG 119 (194)
T ss_pred --CCCceEEEEECcCCCEEEEEEccCCc--ccEEEcCcc---cEeEeecCCC-ceE----------EEECCCCCEEEEEE
Confidence 23358899999999977666443222 344555542 2222221111 010 1356666 555543
Q ss_pred cCC-ccEEEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEc
Q 008873 163 KTG-FRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 163 ~~g-~~~l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~ 207 (550)
.++ ...|.++|.+..+. +.... ..+... .|||||++|+....
T Consensus 120 ~~n~~G~l~~wd~~~~~~--i~~~~~~~~t~~-~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKK--ISTFEHSDATDV-EWSPDGRYLATATT 163 (194)
T ss_pred ccCCCcEEEEEECCCCEE--eeccccCcEEEE-EEcCCCCEEEEEEe
Confidence 322 35677888764432 32221 123333 59999999887665
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-06 Score=73.98 Aligned_cols=183 Identities=16% Similarity=0.183 Sum_probs=112.3
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 409 (550)
++|++-|-++-.. -....++.|+++|+.|+.+|-+-.=.+ ..-......|+.+++++..++.
T Consensus 4 ~~v~~SGDgGw~~-------~d~~~a~~l~~~G~~VvGvdsl~Yfw~---------~rtP~~~a~Dl~~~i~~y~~~w-- 65 (192)
T PF06057_consen 4 LAVFFSGDGGWRD-------LDKQIAEALAKQGVPVVGVDSLRYFWS---------ERTPEQTAADLARIIRHYRARW-- 65 (192)
T ss_pred EEEEEeCCCCchh-------hhHHHHHHHHHCCCeEEEechHHHHhh---------hCCHHHHHHHHHHHHHHHHHHh--
Confidence 5666666333222 223358899999999999996522111 1112223678889999888875
Q ss_pred CCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCC-
Q 008873 410 KVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK- 484 (550)
Q Consensus 410 d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~- 484 (550)
...++.|+|+|+|+-+.-.+..+-|. +++.+++.+|-... .|... ...+++...... ...+...+.++.
T Consensus 66 ~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~-dFeih-v~~wlg~~~~~~----~~~~~pei~~l~~ 139 (192)
T PF06057_consen 66 GRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTA-DFEIH-VSGWLGMGGDDA----AYPVIPEIAKLPP 139 (192)
T ss_pred CCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcc-eEEEE-hhhhcCCCCCcc----cCCchHHHHhCCC
Confidence 35799999999999888888776663 57777777664321 11111 112233322211 124566777787
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.|+++|+|+.+.... ...+ ....++.+..|| ||.|. .+...+.+.|++-+++
T Consensus 140 ~~v~CiyG~~E~d~~-------cp~l--~~~~~~~i~lpG-gHHfd--~dy~~La~~Il~~l~~ 191 (192)
T PF06057_consen 140 APVQCIYGEDEDDSL-------CPSL--RQPGVEVIALPG-GHHFD--GDYDALAKRILDALKA 191 (192)
T ss_pred CeEEEEEcCCCCCCc-------Cccc--cCCCcEEEEcCC-CcCCC--CCHHHHHHHHHHHHhc
Confidence 499999998775421 1112 235678899998 55552 3466677777776653
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-06 Score=82.31 Aligned_cols=200 Identities=19% Similarity=0.190 Sum_probs=114.1
Q ss_pred EEEEEc-CCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC--CCchhhHHHHhhcc
Q 008873 312 YGALYK-PDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA--RRGLKFEASIKHNC 388 (550)
Q Consensus 312 ~~~~~~-P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g--~~~~~~~~~~~~~~ 388 (550)
..|+.. |.... ++.-|+|||+|||+.........-.....+...| . ...++++||.-.. ..+..+.
T Consensus 107 s~Wlvk~P~~~~--pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~~~~yP------- 175 (374)
T PF10340_consen 107 SYWLVKAPNRFK--PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEHGHKYP------- 175 (374)
T ss_pred eEEEEeCCcccC--CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccCCCcCc-------
Confidence 357777 66532 2345999999999765432211000001111222 2 5699999998654 1221111
Q ss_pred CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh--C---CCeeEEEEEcCCcCCccccc----------
Q 008873 389 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR--F---PDVFQCAVSGAPVTSWDGYD---------- 453 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~--~---~~~~~~~v~~~~~~~~~~~~---------- 453 (550)
..+.++++..++|.+.. ..++|.++|-|+||.+++.++.. . ...-+.+|+++|.+......
T Consensus 176 --tQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n 251 (374)
T PF10340_consen 176 --TQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDN 251 (374)
T ss_pred --hHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcccccc
Confidence 23678899999999442 24789999999999999887653 1 12347899999976554110
Q ss_pred -----------chhhhhccCC--CCCCccccccCCh-----hhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHHHc
Q 008873 454 -----------TFYTEKYMGL--PSEDPVGYEYSSV-----MHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVAA 513 (550)
Q Consensus 454 -----------~~~~~~~~g~--~~~~~~~~~~~~~-----~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 513 (550)
..+.+.|.+. +......-.-.++ ...-++| ++-++++.|+.+-. -.+.+++.+.+...
T Consensus 252 ~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf--rddI~~~~~~~~~~ 329 (374)
T PF10340_consen 252 EKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF--RDDILEWAKKLNDV 329 (374)
T ss_pred ccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc--HHHHHHHHHHHhhc
Confidence 0122233332 1110000000000 0111222 25799999998754 35778888888755
Q ss_pred CC-----CeEEEEcCCCCCc
Q 008873 514 RK-----PYEILIFPDERHM 528 (550)
Q Consensus 514 ~~-----~~~~~~~p~~~H~ 528 (550)
+. ..++.+-+++.|.
T Consensus 330 ~~~~~~~~~nv~~~~~G~Hi 349 (374)
T PF10340_consen 330 KPNKFSNSNNVYIDEGGIHI 349 (374)
T ss_pred CccccCCcceEEEecCCccc
Confidence 43 3677788888886
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=75.99 Aligned_cols=186 Identities=16% Similarity=0.097 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC------CCCch------hh------HHHHhhcc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT------ARRGL------KF------EASIKHNC 388 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~------g~~~~------~~------~~~~~~~~ 388 (550)
+.|-|+++||--.+. +.|+.....+.+.|.+. +-.+.+|-+-. ....+ .. ......+-
T Consensus 4 ~k~rvLcLHGfrQsg---~~F~~Ktg~~rK~l~k~-~el~f~~aPh~~~~~~~~~~~~~~~~~a~~~~~~~~~~Wf~~n~ 79 (230)
T KOG2551|consen 4 KKLRVLCLHGFRQSG---KVFSEKTGSLRKLLKKL-AELVFPDAPHELPKADLPDSEREKKFDAPPDVEQNRYGWFSNNE 79 (230)
T ss_pred CCceEEEecchhhcc---HHHHHHhhhHHHHHHhh-heEEecCCCccCCcccCCcccccccccCCcccccchhhhhcccc
Confidence 347789999943332 23333334456666666 77777776520 00000 00 00001110
Q ss_pred -CC---CchHH-HHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC--C------CeeEEEEEcCCcCCcccccch
Q 008873 389 -GR---IDAED-QLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--P------DVFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 389 -~~---~~~~D-~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--~------~~~~~~v~~~~~~~~~~~~~~ 455 (550)
.. ...+. +....+|+.+++..| ||+|+|.|+.++.++++.. . ..|+-+|.++|+..+..
T Consensus 80 ~~~~~~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---- 151 (230)
T KOG2551|consen 80 ASFTEYFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---- 151 (230)
T ss_pred cccccccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----
Confidence 11 11222 444455666676556 7999999999999988721 1 13677777777643210
Q ss_pred hhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH
Q 008873 456 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 535 (550)
Q Consensus 456 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~ 535 (550)
...-..+...+++|.|-|.|+.|.++|.+.+..+++.+... .++.-|+ ||.+.. .
T Consensus 152 -----------------~~~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~---~ 206 (230)
T KOG2551|consen 152 -----------------KLDESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEHPG-GHIVPN---K 206 (230)
T ss_pred -----------------hhhhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEecCC-CccCCC---c
Confidence 00112345678899999999999999999999999987433 4444454 898733 2
Q ss_pred HHHHHHHHHHHHHh
Q 008873 536 IYMEERIWEFIERT 549 (550)
Q Consensus 536 ~~~~~~~~~fl~~~ 549 (550)
....+.+.+||...
T Consensus 207 ~~~~~~i~~fi~~~ 220 (230)
T KOG2551|consen 207 AKYKEKIADFIQSF 220 (230)
T ss_pred hHHHHHHHHHHHHH
Confidence 25567788887653
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-06 Score=86.90 Aligned_cols=157 Identities=11% Similarity=0.026 Sum_probs=94.4
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
++...||||+++||++....+. ...+.+||+.+.. +..++++.+
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~----------------------------~d~~s~Lwv~~~g-g~~~~lt~g------- 396 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGA----------------------------PDPASSLWVGPLG-GVAVQVLEG------- 396 (591)
T ss_pred ccceECCCCCEEEEEEeecCCC----------------------------CCcceEEEEEeCC-CcceeeecC-------
Confidence 5677999999999998532110 1124689999974 444666432
Q ss_pred CCCceeEEEEECCCCeEEEEEEec--------CCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNR--------SQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG 156 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r--------~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (550)
. .+..|+|||||+.|+|+.++ .....+||.+++++|+.++ ..... +.- ..|++|+
T Consensus 397 --~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~--------Iss----l~wSpDG 459 (591)
T PRK13616 397 --H-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGP--------ISE----LQLSRDG 459 (591)
T ss_pred --C-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCC--------cCe----EEECCCC
Confidence 2 36789999999988877544 1134578888888887654 11111 000 1345555
Q ss_pred --EEEEEccCCccEEEE---EeCCCceeec------ccccCeE-EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC
Q 008873 157 --FIWASEKTGFRHLYL---HDINGTCLGP------ITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD 224 (550)
Q Consensus 157 --~~~~s~~~g~~~l~~---~~~~~~~~~~------lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~ 224 (550)
++|+++ | +||+ ...++|+ +. |+.+--. +... .|..++. |+..... ....+|.+++ +
T Consensus 460 ~RiA~i~~--g--~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l-~W~~~~~-L~V~~~~---~~~~v~~v~v--D 527 (591)
T PRK13616 460 VRAAMIIG--G--KVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL-DWRTGDS-LVVGRSD---PEHPVWYVNL--D 527 (591)
T ss_pred CEEEEEEC--C--EEEEEEEEeCCCCc-eeecccEEeecccCCccccc-eEecCCE-EEEEecC---CCCceEEEec--C
Confidence 777763 3 6777 4444554 33 3333222 2333 4888876 5544332 2367999999 6
Q ss_pred CC
Q 008873 225 WN 226 (550)
Q Consensus 225 g~ 226 (550)
|.
T Consensus 528 G~ 529 (591)
T PRK13616 528 GS 529 (591)
T ss_pred Cc
Confidence 75
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-06 Score=72.62 Aligned_cols=116 Identities=20% Similarity=0.165 Sum_probs=76.8
Q ss_pred CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCC----CcE
Q 008873 412 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK----GKL 487 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~----~P~ 487 (550)
++++|+|.|+|||.|.+++.++. + .+|+++|...... ....++|.+.+ |....+ .+++.++ ...
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~----~L~~~ig~~~~----y~~~~~-~h~~eL~~~~p~r~ 127 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEE----NMEGKIDRPEE----YADIAT-KCVTNFREKNRDRC 127 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHH----HHHHHhCCCcc----hhhhhH-HHHHHhhhcCcccE
Confidence 46999999999999999999864 2 3455666654311 11223333221 222221 2233332 246
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 488 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 488 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+++..+.|++..+.++.+.+... ....+.+|++|.|.+ .......|++|+..
T Consensus 128 ~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~~ 179 (180)
T PRK04940 128 LVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKTL 179 (180)
T ss_pred EEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHhc
Confidence 99999999999998887777432 257889999999854 66678899999853
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-05 Score=72.52 Aligned_cols=182 Identities=10% Similarity=0.011 Sum_probs=93.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+++|+++++.... +. . ......+.|+|||+.++...... ..|+++|+.+++............
T Consensus 54 ~v~~~d~~~~~~~~~-~~-------~-~~~~~~~~~~~~g~~l~~~~~~~---~~l~~~d~~~~~~~~~~~~~~~~~--- 118 (300)
T TIGR03866 54 TIQVIDLATGEVIGT-LP-------S-GPDPELFALHPNGKILYIANEDD---NLVTVIDIETRKVLAEIPVGVEPE--- 118 (300)
T ss_pred eEEEEECCCCcEEEe-cc-------C-CCCccEEEECCCCCEEEEEcCCC---CeEEEEECCCCeEEeEeeCCCCcc---
Confidence 477889988866432 11 0 11234578999999765553222 258888988765432221110000
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeec-ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~-lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.+ .+++++ +++.+..++ ..++.++.++++... +..+. .... ..|+++|+.|++.+..++ .++
T Consensus 119 --~~-------~~~~dg~~l~~~~~~~-~~~~~~d~~~~~~~~~~~~~~-~~~~-~~~s~dg~~l~~~~~~~~----~v~ 182 (300)
T TIGR03866 119 --GM-------AVSPDGKIVVNTSETT-NMAHFIDTKTYEIVDNVLVDQ-RPRF-AEFTADGKELWVSSEIGG----TVS 182 (300)
T ss_pred --eE-------EECCCCCEEEEEecCC-CeEEEEeCCCCeEEEEEEcCC-CccE-EEECCCCCEEEEEcCCCC----EEE
Confidence 01 234544 444443322 235556766554322 21111 1122 358999998887755443 355
Q ss_pred EEEeCCCCCCCCCCCeeeCCC-C-----c--eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 218 CAKLYPDWNHTLEAPVKLTNG-K-----G--KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~-~-----~--~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.+++. .+. ....++.. . . ...+.++||++.++...... ..+.++|..+++..+.+
T Consensus 183 i~d~~-~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~---~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 183 VIDVA-TRK----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA---NRVAVVDAKTYEVLDYL 245 (300)
T ss_pred EEEcC-cce----eeeeeeecccccccccCCccceEECCCCCEEEEEcCCC---CeEEEEECCCCcEEEEE
Confidence 55662 221 12222211 0 1 23457899999865544332 36888898777654433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-06 Score=79.64 Aligned_cols=192 Identities=16% Similarity=0.118 Sum_probs=113.0
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHH---hCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLR---SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~---~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
.++++++.|.|+-..+. ..+.+.|. ...+.|+++.+.|+......-. ...+.....++|+++-.-.+.
T Consensus 2 ~~li~~IPGNPGlv~fY-------~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~--~~~~~~~~sL~~QI~hk~~~i 72 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFY-------EEFLSALYEKLNPQFEILGISHAGHSTSPSNSK--FSPNGRLFSLQDQIEHKIDFI 72 (266)
T ss_pred cEEEEEECCCCChHHHH-------HHHHHHHHHhCCCCCeeEEecCCCCcCCccccc--ccCCCCccCHHHHHHHHHHHH
Confidence 37899999999975432 22244444 3589999999999865443200 001223345677665533332
Q ss_pred Hc----CCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcCC-cccc------------------------
Q 008873 405 KQ----GLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTS-WDGY------------------------ 452 (550)
Q Consensus 405 ~~----~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~~-~~~~------------------------ 452 (550)
++ ......++.++|||.|+|+++.++-+.+ ..++.++..-|... +...
T Consensus 73 ~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp~G~~l~~~~~~~~~~~~~~~~~~ 152 (266)
T PF10230_consen 73 KELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSPNGRRLTPLLFSPPPLVWLASFLS 152 (266)
T ss_pred HHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCchhHHHHHHHhhccHHHHHHHHHH
Confidence 22 1114578999999999999999999988 56777777777532 1100
Q ss_pred ------cc----hhhhhccCCCCCC----------c-----------ccc---ccCChhhhhhcC---CCcEEEEecCCC
Q 008873 453 ------DT----FYTEKYMGLPSED----------P-----------VGY---EYSSVMHHVHKM---KGKLLLVHGMID 495 (550)
Q Consensus 453 ------~~----~~~~~~~g~~~~~----------~-----------~~~---~~~~~~~~~~~i---~~P~lii~G~~D 495 (550)
.. +.....++.+... + +++ .+.+.....+.. ..++.+..|.+|
T Consensus 153 ~l~~~lP~~~~~~lv~~~~~~~~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I~~~d~~~~~~~~~~~~~kl~f~fg~~D 232 (266)
T PF10230_consen 153 FLLSLLPESVLRWLVRWVMGFPPPAVEATTKFLLSPRVVRQALYMARDEMREIREDDNDELIKHHNENGDKLWFYFGQND 232 (266)
T ss_pred HHHHHCCHHHHHHHHHHHcCCChHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCcchHHHHHHhccCCCEEEEEEeCCC
Confidence 00 0011122333110 0 000 011101112222 568999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 496 ENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 496 ~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
..||.+...++.+++......+.+.. ++-.|+|
T Consensus 233 ~Wvp~~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 233 HWVPNETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred CCCCHHHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 99999989999888754444555544 7777876
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.5e-07 Score=65.99 Aligned_cols=59 Identities=27% Similarity=0.373 Sum_probs=48.1
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
|.+|.+..|.|+.. ++.+|+++||...... .+..+++.|+++||.|+++|+||+|.|..
T Consensus 1 G~~L~~~~w~p~~~-----~k~~v~i~HG~~eh~~-------ry~~~a~~L~~~G~~V~~~D~rGhG~S~g 59 (79)
T PF12146_consen 1 GTKLFYRRWKPENP-----PKAVVVIVHGFGEHSG-------RYAHLAEFLAEQGYAVFAYDHRGHGRSEG 59 (79)
T ss_pred CcEEEEEEecCCCC-----CCEEEEEeCCcHHHHH-------HHHHHHHHHHhCCCEEEEECCCcCCCCCC
Confidence 56789999999762 4589999999655432 45667999999999999999999998863
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-07 Score=94.15 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=66.5
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH---------HHH-h---------hc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE---------ASI-K---------HN 387 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~---------~~~-~---------~~ 387 (550)
..|+||++||-.+... .|..+++.|+++||.|+++|+||+|.+..... ... + ++
T Consensus 448 g~P~VVllHG~~g~~~-------~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRD 520 (792)
T TIGR03502 448 GWPVVIYQHGITGAKE-------NALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARD 520 (792)
T ss_pred CCcEEEEeCCCCCCHH-------HHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceecccccccccc
Confidence 4689999999655432 34556788999999999999999997733200 000 0 00
Q ss_pred cCCCchHHHHHHHHHHH------Hc----CCCCCCceEEEEechhHHHHHHHHhh
Q 008873 388 CGRIDAEDQLTGAEWLI------KQ----GLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~------~~----~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.-...+.|+......+. ++ ...+..++.++||||||.++..++..
T Consensus 521 n~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 521 NLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 00123567766666665 11 12467799999999999999988875
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-06 Score=80.75 Aligned_cols=159 Identities=16% Similarity=0.287 Sum_probs=86.2
Q ss_pred CCCcccccCCCCCCCC-CeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEe-cCCCceEEEEE
Q 008873 41 SEAQEDHAYPFAGASN-VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN-RSQTKLKVLKF 118 (550)
Q Consensus 41 ~~~~~~~~y~~~g~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~-r~~~~~~l~~~ 118 (550)
|.++..+.|.--|.-. -..+||+++.+++..+++.- ......+..-.|+|||+.|.+.+. +.+....|+.+
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-------~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-------RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-------CCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 4556667776666544 34689999999988887733 122456778899999998887654 44446679999
Q ss_pred ECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc----------CC-----ccEEEEEeCCCceeeccc
Q 008873 119 DIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK----------TG-----FRHLYLHDINGTCLGPIT 183 (550)
Q Consensus 119 ~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------~g-----~~~l~~~~~~~~~~~~lT 183 (550)
++++++.+.+...+. .+. |.. ++|+=+++.|. +| ..-||+++...+..+.|.
T Consensus 270 d~~t~~~~~~~~~p~--~~H----~~s-------s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 270 DPDTGERRRLMEMPW--CSH----FMS-------SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp -TTT--EEEEEEE-S--EEE----EEE--------TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred CCCCCCceEEEeCCc--eee----eEE-------cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence 999998877655431 111 111 22332222221 11 246788888777666665
Q ss_pred ccC--eEE--------EEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 184 EGD--WMV--------EQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 184 ~~~--~~~--------~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
..+ |.+ ..-+.+||||++|+|+++..+. .+||.|.+
T Consensus 337 ~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~--~~vY~v~i 382 (386)
T PF14583_consen 337 RHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGP--PAVYLVEI 382 (386)
T ss_dssp E-------BTTBSSTT----EE-TTSSEEEEEE-TTSS---EEEEEE-
T ss_pred eccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCC--ccEEEEeC
Confidence 532 221 1224699999999999999876 79999987
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.7e-06 Score=80.13 Aligned_cols=191 Identities=16% Similarity=0.225 Sum_probs=112.3
Q ss_pred cCCCCCCCCCCceEEEEE----cCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCc
Q 008873 317 KPDESRYGPPPYKTLISV----YGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 392 (550)
Q Consensus 317 ~P~~~~~~~~~~P~vv~~----hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~ 392 (550)
.|.+....+.|.|+||.= || |+-. .|.. +...-.....|+.|..+-+.-...-| ..
T Consensus 58 pp~~~~~d~~krP~vViDPRAGHG-pGIG----GFK~--dSevG~AL~~GHPvYFV~F~p~P~pg-------------QT 117 (581)
T PF11339_consen 58 PPEGVPVDPTKRPFVVIDPRAGHG-PGIG----GFKP--DSEVGVALRAGHPVYFVGFFPEPEPG-------------QT 117 (581)
T ss_pred CCCCCCCCCCCCCeEEeCCCCCCC-CCcc----CCCc--ccHHHHHHHcCCCeEEEEecCCCCCC-------------Cc
Confidence 344432233678988863 55 2222 2222 11233334558888777765433222 23
Q ss_pred hHHHHHHHHH----HHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEE-EcCCcCCcccc-------------c-
Q 008873 393 AEDQLTGAEW----LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV-SGAPVTSWDGY-------------D- 453 (550)
Q Consensus 393 ~~D~~~~~~~----l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v-~~~~~~~~~~~-------------~- 453 (550)
+.|+..+... +.+.. -+..+..|+|-|.||.+++++++.+|+++.-+| +++|+.-|... .
T Consensus 118 l~DV~~ae~~Fv~~V~~~h-p~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsywaG~~g~nPmRy~ggl~gg 196 (581)
T PF11339_consen 118 LEDVMRAEAAFVEEVAERH-PDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYWAGERGDNPMRYMGGLLGG 196 (581)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcccccCCCCCCcHHHhcCCCcc
Confidence 6666665433 33321 144489999999999999999999999886554 46676554310 0
Q ss_pred ch-------------------------------hhh-------------------hccCCCC-CCcccc-----------
Q 008873 454 TF-------------------------------YTE-------------------KYMGLPS-EDPVGY----------- 471 (550)
Q Consensus 454 ~~-------------------------------~~~-------------------~~~g~~~-~~~~~~----------- 471 (550)
++ |.+ ++.+.+. -+.+.+
T Consensus 197 sw~~~l~sDlG~G~fdGa~lv~nFe~lnPa~~~w~K~y~Ly~~iD~e~~Rfl~FErWwgg~~~l~~~ei~~Iv~nLFvgN 276 (581)
T PF11339_consen 197 SWLTALVSDLGNGRFDGAWLVQNFENLNPANTYWSKYYDLYANIDTERERFLEFERWWGGFYDLNGEEILWIVENLFVGN 276 (581)
T ss_pred hHHHHHHHHcCCCccCcHHHHhhhhccChhHHHHHHHHHHHhccCCchhhhhHHHHHhCCccCCCHHHHHHHHHHHhccc
Confidence 00 000 0001000 000000
Q ss_pred --------ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHH-------HHHHHcCCCeEEEEcCCCCCc
Q 008873 472 --------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI-------NALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 472 --------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~-------~~l~~~~~~~~~~~~p~~~H~ 528 (550)
...-...++++|++|+.++.+..|.++|++|+.... +.++.+|..+.+.+-+..||-
T Consensus 277 rL~~g~~~~~~G~~~DLr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 277 RLAKGEFRVSDGRRVDLRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhccCceeccCCcEeehhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 000112357889999999999999999999995554 446777888888899999995
|
Their function is unknown. |
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=76.85 Aligned_cols=134 Identities=15% Similarity=0.033 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHc-CCC-CCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc--ccc-c--chhhh------
Q 008873 392 DAEDQLTGAEWLIKQ-GLA-KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW--DGY-D--TFYTE------ 458 (550)
Q Consensus 392 ~~~D~~~~~~~l~~~-~~~-d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~--~~~-~--~~~~~------ 458 (550)
...|++.|+.++.++ +.. +.-++.++|+|+|||++..++--.|..|.+++--++..-. +.. . ..|.+
T Consensus 162 qAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~ 241 (403)
T PF11144_consen 162 QAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGE 241 (403)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccc
Confidence 367888888888876 222 2358999999999999999998889999999887664321 110 0 00000
Q ss_pred ----------hccCCCCCCc---------cccccC-----ChhhhhhcC--CCcEEEEecCCCCCCChHHHHHHHHHHHH
Q 008873 459 ----------KYMGLPSEDP---------VGYEYS-----SVMHHVHKM--KGKLLLVHGMIDENVHFRHTARLINALVA 512 (550)
Q Consensus 459 ----------~~~g~~~~~~---------~~~~~~-----~~~~~~~~i--~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 512 (550)
-+..+.|... +.+.-. .-+.-.++. ++-....|+..|+.+|.++-.++++.++.
T Consensus 242 ~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~ 321 (403)
T PF11144_consen 242 FFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKN 321 (403)
T ss_pred ccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence 0001222210 011000 001112223 23456689999999999999999999999
Q ss_pred cCCCeEEEEcCCC
Q 008873 513 ARKPYEILIFPDE 525 (550)
Q Consensus 513 ~~~~~~~~~~p~~ 525 (550)
.|-+++++.+.++
T Consensus 322 lgfda~l~lIkde 334 (403)
T PF11144_consen 322 LGFDATLHLIKDE 334 (403)
T ss_pred cCCCeEEEEecCh
Confidence 9999999988443
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=79.59 Aligned_cols=206 Identities=17% Similarity=0.101 Sum_probs=111.5
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHH-hCCc----EEEEECCCCCCCCchhh--------HHHHhhccCC---
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGI----LVWKLDNRGTARRGLKF--------EASIKHNCGR--- 390 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~----~vv~~d~rG~g~~~~~~--------~~~~~~~~~~--- 390 (550)
..|+ ||+||..++.. .++.+.+.+. +.|. .++.++.-|.-.....+ ......+...
T Consensus 11 ~tPT-ifihG~~gt~~-------s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~ 82 (255)
T PF06028_consen 11 TTPT-IFIHGYGGTAN-------SFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANY 82 (255)
T ss_dssp -EEE-EEE--TTGGCC-------CCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHH
T ss_pred CCcE-EEECCCCCChh-------HHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCH
Confidence 3455 66899766643 4455677776 5553 34555544421111000 0000011000
Q ss_pred -CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC-----eeEEEEEcCCcCCcc-cccchhhh---hc
Q 008873 391 -IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWD-GYDTFYTE---KY 460 (550)
Q Consensus 391 -~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-----~~~~~v~~~~~~~~~-~~~~~~~~---~~ 460 (550)
....-+..++.+|.++..+ +++-++||||||..++.++..+.. .+...|++++..+-. ........ .-
T Consensus 83 ~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~ 160 (255)
T PF06028_consen 83 KKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNK 160 (255)
T ss_dssp HHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CST
T ss_pred HHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhcc
Confidence 1245567788888888654 689999999999999999887421 356666655543322 11110000 00
Q ss_pred cCCCCCCccccccCChhhh-hhcCC--CcEEEEecC------CCCCCChHHHHHHHHHHHHcCCCeEEEEcCC--CCCcC
Q 008873 461 MGLPSEDPVGYEYSSVMHH-VHKMK--GKLLLVHGM------IDENVHFRHTARLINALVAARKPYEILIFPD--ERHMP 529 (550)
Q Consensus 461 ~g~~~~~~~~~~~~~~~~~-~~~i~--~P~lii~G~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~--~~H~~ 529 (550)
.| |......|...- .. -.++. ..+|-|.|. .|..||...+..+..-++.....++-.++.| +.|+-
T Consensus 161 ~g-p~~~~~~y~~l~--~~~~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~ 237 (255)
T PF06028_consen 161 NG-PKSMTPMYQDLL--KNRRKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQ 237 (255)
T ss_dssp T--BSS--HHHHHHH--HTHGGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCG
T ss_pred cC-CcccCHHHHHHH--HHHHhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCcccc
Confidence 12 322222332211 11 12332 578999998 8999999999888777766666777777765 68986
Q ss_pred CCCCcHHHHHHHHHHHHH
Q 008873 530 RRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 530 ~~~~~~~~~~~~~~~fl~ 547 (550)
.+ ++ ..+.+.|.+||-
T Consensus 238 Lh-eN-~~V~~~I~~FLw 253 (255)
T PF06028_consen 238 LH-EN-PQVDKLIIQFLW 253 (255)
T ss_dssp GG-CC-HHHHHHHHHHHC
T ss_pred CC-CC-HHHHHHHHHHhc
Confidence 55 33 366788888873
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-05 Score=73.40 Aligned_cols=153 Identities=12% Similarity=0.165 Sum_probs=92.5
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCc
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF 166 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~ 166 (550)
...+.-+.||||.++++.+...+. +.+-|+++|+.+.+.... -+ ++. ....|-||++-++.-. --
T Consensus 269 ~~~V~yi~wSPDdryLlaCg~~e~----~~lwDv~tgd~~~~y~~~-~~-------~S~--~sc~W~pDg~~~V~Gs-~d 333 (519)
T KOG0293|consen 269 SQPVSYIMWSPDDRYLLACGFDEV----LSLWDVDTGDLRHLYPSG-LG-------FSV--SSCAWCPDGFRFVTGS-PD 333 (519)
T ss_pred cCceEEEEECCCCCeEEecCchHh----eeeccCCcchhhhhcccC-cC-------CCc--ceeEEccCCceeEecC-CC
Confidence 345677899999998887744432 777789999988766532 11 111 1124677774443211 12
Q ss_pred cEEEEEeCCCceeecccccCeE------EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc
Q 008873 167 RHLYLHDINGTCLGPITEGDWM------VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 240 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~------~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~ 240 (550)
.+++..+++|... +.|. +.+. ..++||++++....+. ++...+.. ... ....++...+
T Consensus 334 r~i~~wdlDgn~~-----~~W~gvr~~~v~dl-ait~Dgk~vl~v~~d~-----~i~l~~~e-~~~----dr~lise~~~ 397 (519)
T KOG0293|consen 334 RTIIMWDLDGNIL-----GNWEGVRDPKVHDL-AITYDGKYVLLVTVDK-----KIRLYNRE-ARV----DRGLISEEQP 397 (519)
T ss_pred CcEEEecCCcchh-----hcccccccceeEEE-EEcCCCcEEEEEeccc-----ceeeechh-hhh----hhccccccCc
Confidence 5788899887431 2332 3333 3788999998876432 33333431 110 1224555567
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
.+++.+|.||++++.... +.++.+.|++..
T Consensus 398 its~~iS~d~k~~LvnL~----~qei~LWDl~e~ 427 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQ----DQEIHLWDLEEN 427 (519)
T ss_pred eeEEEEcCCCcEEEEEcc----cCeeEEeecchh
Confidence 899999999998766543 357777777533
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0001 Score=70.83 Aligned_cols=182 Identities=9% Similarity=0.014 Sum_probs=98.8
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++|+.+++.. .+.. ......+.|+|||+.++...... ..++.++.++++..........
T Consensus 96 ~l~~~d~~~~~~~~~~~~----------~~~~~~~~~~~dg~~l~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~---- 158 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPV----------GVEPEGMAVSPDGKIVVNTSETT---NMAHFIDTKTYEIVDNVLVDQR---- 158 (300)
T ss_pred eEEEEECCCCeEEeEeeC----------CCCcceEEECCCCCEEEEEecCC---CeEEEEeCCCCeEEEEEEcCCC----
Confidence 5788899876542 2211 11234579999999877664322 2356668877765332211100
Q ss_pred ccCccccCCCCCccCCCc-EEEEE-ccCCccEEEEEeCCCcee-eccccc-------CeEEEEEEeEeecCCEEEEEEcC
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWAS-EKTGFRHLYLHDINGTCL-GPITEG-------DWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s-~~~g~~~l~~~~~~~~~~-~~lT~~-------~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
+. . ..+++++ .++++ ..+| .|+++++++++. +.++.. ......+ .++++|+.+++....
T Consensus 159 --~~--~----~~~s~dg~~l~~~~~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 159 --PR--F----AEFTADGKELWVSSEIGG--TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGI-KLTKDGKTAFVALGP 227 (300)
T ss_pred --cc--E----EEECCCCCEEEEEcCCCC--EEEEEEcCcceeeeeeeecccccccccCCccce-EECCCCCEEEEEcCC
Confidence 00 0 0234444 44443 3333 577888776543 334311 0111123 489999987766543
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+ .+..+++. .+. ....+..+.....+.|+|+|++|+.... .-..|.++|+.+++.++.+.
T Consensus 228 ~~----~i~v~d~~-~~~----~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 228 AN----RVAVVDAK-TYE----VLDYLLVGQRVWQLAFTPDEKYLLTTNG---VSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CC----eEEEEECC-CCc----EEEEEEeCCCcceEEECCCCCEEEEEcC---CCCeEEEEECCCCcEEEEEE
Confidence 32 35556762 221 2223333334666789999998754422 12379999998887655553
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.1e-06 Score=78.38 Aligned_cols=181 Identities=17% Similarity=0.146 Sum_probs=110.0
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCC
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 372 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG 372 (550)
-.....+++.+.. |+..|....+.-+.. ++.-.|++.-|..+.....-........+.+...+.|.+|+.+||||
T Consensus 107 ~~~~~~kRv~Iq~-D~~~IDt~~I~~~~a----~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpG 181 (365)
T PF05677_consen 107 DEVSSVKRVPIQY-DGVKIDTMAIHQPEA----KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPG 181 (365)
T ss_pred ccccceeeEEEee-CCEEEEEEEeeCCCC----CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCc
Confidence 3445678888887 888888887653332 23356777777543322100111111224555667899999999999
Q ss_pred CCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCC----CeeEEEEE-cCCc
Q 008873 373 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFP----DVFQCAVS-GAPV 446 (550)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~----~~~~~~v~-~~~~ 446 (550)
.|.|..... ..++ ..|..++++||.++ ..+.+++|++.|||.||.++..++.++. +-++-.+. -.++
T Consensus 182 Vg~S~G~~s---~~dL----v~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~ikDRsf 254 (365)
T PF05677_consen 182 VGSSTGPPS---RKDL----VKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLIKDRSF 254 (365)
T ss_pred cccCCCCCC---HHHH----HHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEEecCCc
Confidence 987754321 2333 78899999999875 3578899999999999999988766531 22232222 2333
Q ss_pred CCcccccchh-------hhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCC
Q 008873 447 TSWDGYDTFY-------TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMI 494 (550)
Q Consensus 447 ~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~ 494 (550)
.+.......+ .-+.+| +..+.....+++.+|-+++|+.+
T Consensus 255 ssl~~vas~~~~~~~~~l~~l~g---------WnidS~K~s~~l~cpeIii~~~d 300 (365)
T PF05677_consen 255 SSLAAVASQFFGPIGKLLIKLLG---------WNIDSAKNSEKLQCPEIIIYGVD 300 (365)
T ss_pred chHHHHHHHHHHHHHHHHHHHhc---------cCCCchhhhccCCCCeEEEeccc
Confidence 3322111111 111111 22334567788899999999874
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-05 Score=64.85 Aligned_cols=135 Identities=15% Similarity=0.047 Sum_probs=85.7
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccc
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 470 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 470 (550)
-.++|-++.+...+..- ++.+.|++||.|+..++..+.+....++++++++|.-- .. +......
T Consensus 41 P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~-~~------------~~~~~~~ 104 (181)
T COG3545 41 PVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDV-SR------------PEIRPKH 104 (181)
T ss_pred CCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCc-cc------------cccchhh
Confidence 34566666555444332 34599999999999999999877668899999998631 11 0000111
Q ss_pred cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC--CCCCcHHHHHHHHHHHHH
Q 008873 471 YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 471 ~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~--~~~~~~~~~~~~~~~fl~ 547 (550)
.-.+++ ....++.-|.++++..+|+.++++.+..+.+++ ...++....+||.. .+.....+.+..+.+|+-
T Consensus 105 ~~tf~~-~p~~~lpfps~vvaSrnDp~~~~~~a~~~a~~w-----gs~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s 177 (181)
T COG3545 105 LMTFDP-IPREPLPFPSVVVASRNDPYVSYEHAEDLANAW-----GSALVDVGEGGHINAESGFGPWPEGYALLAQLLS 177 (181)
T ss_pred ccccCC-CccccCCCceeEEEecCCCCCCHHHHHHHHHhc-----cHhheecccccccchhhcCCCcHHHHHHHHHHhh
Confidence 111111 112333458999999999999999999999887 34567788888864 122334444555555543
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-06 Score=80.05 Aligned_cols=126 Identities=18% Similarity=0.106 Sum_probs=78.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 390 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~ 390 (550)
+....|.|.... .-+.|+++ +|---....+.+- ..-..+..+|.++|..|..++.++-...-. ..++.+
T Consensus 93 ~~liqy~p~~e~--v~~~PlLi-VpP~iNk~yi~Dl--~~~~s~V~~l~~~g~~vfvIsw~nPd~~~~------~~~~ed 161 (445)
T COG3243 93 LELIQYKPLTEK--VLKRPLLI-VPPWINKFYILDL--SPEKSLVRWLLEQGLDVFVISWRNPDASLA------AKNLED 161 (445)
T ss_pred hhhhccCCCCCc--cCCCceEe-eccccCceeEEeC--CCCccHHHHHHHcCCceEEEeccCchHhhh------hccHHH
Confidence 334455565431 23567766 4543222221111 122345889999999999999986543221 112222
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCe-eEEEEEcCCcCCc
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV-FQCAVSGAPVTSW 449 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~-~~~~v~~~~~~~~ 449 (550)
+..+++..+++.+++.. ..++|-++|+|.||.++..+++.++.+ ++.+.......|+
T Consensus 162 Yi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 162 YILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred HHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHHhhhhcccccceeeecchhh
Confidence 22456677888877764 236899999999999999999887766 7777776655554
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.9e-06 Score=80.82 Aligned_cols=167 Identities=19% Similarity=0.133 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCC--cEEEEECCCC-CCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG--ILVWKLDNRG-TARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G--~~vv~~d~rG-~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
-.|++++.||.|... -...|...| .+.|.-.| ..|.++|++. .||.+.... .+-++.+.++.
T Consensus 175 ~spl~i~aps~p~ap-~tSd~~~~w---qs~lsl~gevvev~tfdl~n~igG~nI~h~-----------ae~~vSf~r~k 239 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAP-KTSDRMWSW---QSRLSLKGEVVEVPTFDLNNPIGGANIKHA-----------AEYSVSFDRYK 239 (784)
T ss_pred CCceEEeccCCCCCC-ccchHHHhH---HHHHhhhceeeeeccccccCCCCCcchHHH-----------HHHHHHHhhhh
Confidence 348999999988221 123333233 33343333 5567788774 233221111 33455555543
Q ss_pred HH--cCCCCCCceEEEEechhHHHHHHHHhhCCCe-eEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhh
Q 008873 404 IK--QGLAKVGHIGLYGWSYGGYLSAITLARFPDV-FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 480 (550)
Q Consensus 404 ~~--~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 480 (550)
.. .+......|+|+|+|||+.++.++...+.+. +.|.|++.=..+ ..- | + + ...-+.+
T Consensus 240 vlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~-----~vd-----g-p----r----girDE~L 300 (784)
T KOG3253|consen 240 VLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD-----TVD-----G-P----R----GIRDEAL 300 (784)
T ss_pred hhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc-----CCC-----c-c----c----CCcchhh
Confidence 32 3445567899999999988887777655443 566666431110 000 0 0 0 1122456
Q ss_pred hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC
Q 008873 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530 (550)
Q Consensus 481 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~ 530 (550)
-.++.|+|++.|-+|..+++...+++.+++++ +++++++.+++|.+.
T Consensus 301 ldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsma 347 (784)
T KOG3253|consen 301 LDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMA 347 (784)
T ss_pred HhcCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCcccc
Confidence 67789999999999999999999999988854 578999999999984
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.8e-05 Score=67.01 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=82.0
Q ss_pred EEEEECCCCeEEEEEEecC--C------CceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEE
Q 008873 91 ARVNWMHGNILTAQVLNRS--Q------TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWA 160 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~--~------~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 160 (550)
..+.|+|+|+.|+....+. . ....||.++..+.....+.-..... +.. + .|+|++ |+++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~-I~~---~-------~WsP~g~~favi 77 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGP-IHD---V-------AWSPNGNEFAVI 77 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCc-eEE---E-------EECcCCCEEEEE
Confidence 4578999999665544421 1 2468999988887766654322211 110 1 345544 6555
Q ss_pred EccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC--C
Q 008873 161 SEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN--G 238 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~--~ 238 (550)
... -...+-+++.++.....+-.+. ...+ .|||+|+.|++.+..+..+...+| +. .. .+.+.. .
T Consensus 78 ~g~-~~~~v~lyd~~~~~i~~~~~~~--~n~i-~wsP~G~~l~~~g~~n~~G~l~~w--d~--~~------~~~i~~~~~ 143 (194)
T PF08662_consen 78 YGS-MPAKVTLYDVKGKKIFSFGTQP--RNTI-SWSPDGRFLVLAGFGNLNGDLEFW--DV--RK------KKKISTFEH 143 (194)
T ss_pred Ecc-CCcccEEEcCcccEeEeecCCC--ceEE-EECCCCCEEEEEEccCCCcEEEEE--EC--CC------CEEeecccc
Confidence 421 1125666676655444443322 2333 599999999988765433344555 55 21 122222 2
Q ss_pred CceEEEEECCCCCEEEEeecC
Q 008873 239 KGKHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~ 259 (550)
.....+.|||||++++...+.
T Consensus 144 ~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 144 SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred CcEEEEEEcCCCCEEEEEEec
Confidence 245667899999999876654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.7e-05 Score=76.67 Aligned_cols=162 Identities=10% Similarity=0.043 Sum_probs=95.4
Q ss_pred ceeEEEEECCCCeEEEEEEecC----CCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--E----
Q 008873 88 EYLARVNWMHGNILTAQVLNRS----QTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--F---- 157 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~----~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---- 157 (550)
..+.+++.||||+.++++..+. ...+.||+++. +|+.++++..... ..| .|++++ +
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~----t~P---------sWspDG~~lw~v~ 415 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSL----TRP---------SWSLDADAVWVVV 415 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCC----CCc---------eECCCCCceEEEe
Confidence 4678899999999888886321 23568999997 5556777653211 111 344442 3
Q ss_pred -----EEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE--EEeCCCCCCCCC
Q 008873 158 -----IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC--AKLYPDWNHTLE 230 (550)
Q Consensus 158 -----~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~--v~~~~~g~~~~~ 230 (550)
.+++...+-.+||+++.++++.++ ..+..+..+. ||+||++|+|+.. .+||. |--..+|.....
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~-wSpDG~RiA~i~~------g~v~Va~Vvr~~~G~~~l~ 486 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQ-LSRDGVRAAMIIG------GKVYLAVVEQTEDGQYALT 486 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEE-ECCCCCEEEEEEC------CEEEEEEEEeCCCCceeec
Confidence 333334455689988888877665 2222355665 9999999999983 24555 332123321223
Q ss_pred CCeeeCCCCc--eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 231 APVKLTNGKG--KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 231 ~~~~lt~~~~--~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
.++.|...-+ ..+..|..++. |+...++.. ..++.+++ +|..
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~--~~v~~v~v-DG~~ 530 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPE--HPVWYVNL-DGSN 530 (591)
T ss_pred ccEEeecccCCccccceEecCCE-EEEEecCCC--CceEEEec-CCcc
Confidence 3445554322 25567988887 444434333 34688887 4653
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00018 Score=69.36 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=94.5
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEc-CCcCCccc--------ccchhhhh---cc--CCC--CCC---
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG-APVTSWDG--------YDTFYTEK---YM--GLP--SED--- 467 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~-~~~~~~~~--------~~~~~~~~---~~--g~~--~~~--- 467 (550)
..++.++.+|.|.|-=|..++.+++. .+|++|++.+ .++.++.. |...|... |. |.. -..
T Consensus 167 ~~~~i~~FvV~GaSKRGWTtWltaa~-D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~tp~f 245 (367)
T PF10142_consen 167 FGVNIEKFVVTGASKRGWTTWLTAAV-DPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDTPEF 245 (367)
T ss_pred cCCCccEEEEeCCchHhHHHHHhhcc-CcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCCHHH
Confidence 45678999999999999999988884 5677776653 33333321 11000000 00 100 011
Q ss_pred ccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 468 PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 468 ~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+.....+|+.+.++++.|-|||.|.+|+...+..+.-++..|. .+..+..+|+++|+... ....+.+..|+.
T Consensus 246 ~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~---G~K~lr~vPN~~H~~~~----~~~~~~l~~f~~ 318 (367)
T PF10142_consen 246 DKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLP---GEKYLRYVPNAGHSLIG----SDVVQSLRAFYN 318 (367)
T ss_pred HHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCC---CCeeEEeCCCCCcccch----HHHHHHHHHHHH
Confidence 12335568999999999999999999999999999999999883 36789999999999855 556677888876
Q ss_pred H
Q 008873 548 R 548 (550)
Q Consensus 548 ~ 548 (550)
.
T Consensus 319 ~ 319 (367)
T PF10142_consen 319 R 319 (367)
T ss_pred H
Confidence 5
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0024 Score=60.08 Aligned_cols=201 Identities=15% Similarity=0.082 Sum_probs=109.2
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|+|||+.|+....+ ..+.+|++++++.....
T Consensus 12 i~~~~~~~~~~~l~~~~~~------------------------------------g~i~i~~~~~~~~~~~~-------- 47 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGD------------------------------------GTIKVWDLETGELLRTL-------- 47 (289)
T ss_pred EEEEEEcCCCCEEEEeecC------------------------------------cEEEEEEeeCCCcEEEE--------
Confidence 3678899999999876432 24677888876533221
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC-cEEEEEc
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASE 162 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~ 162 (550)
......+..+.|+|+++.++..... ..|++.+..+++........... +. .+ .+.++ .+++.+.
T Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~-i~---~~-------~~~~~~~~~~~~~ 112 (289)
T cd00200 48 KGHTGPVRDVAASADGTYLASGSSD----KTIRLWDLETGECVRTLTGHTSY-VS---SV-------AFSPDGRILSSSS 112 (289)
T ss_pred ecCCcceeEEEECCCCCEEEEEcCC----CeEEEEEcCcccceEEEeccCCc-EE---EE-------EEcCCCCEEEEec
Confidence 1123345678999999877776543 24777788776433222211110 00 01 12333 3555554
Q ss_pred cCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC-c
Q 008873 163 KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-G 240 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~-~ 240 (550)
.+| .|.+++...++ ...+....-.+... .|+++++.++.. ..++ .++..++. .+. ....+.... .
T Consensus 113 ~~~--~i~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~-~~~~----~i~i~d~~-~~~----~~~~~~~~~~~ 179 (289)
T cd00200 113 RDK--TIKVWDVETGKCLTTLRGHTDWVNSV-AFSPDGTFVASS-SQDG----TIKLWDLR-TGK----CVATLTGHTGE 179 (289)
T ss_pred CCC--eEEEEECCCcEEEEEeccCCCcEEEE-EEcCcCCEEEEE-cCCC----cEEEEEcc-ccc----cceeEecCccc
Confidence 334 57777766433 33333233234444 488886555443 3232 34444552 121 222333222 3
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...+.++|+++.+++... ...+.++++.+++....+
T Consensus 180 i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred cceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 566789999988776644 347888888766544433
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00035 Score=66.75 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=129.1
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCC
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 372 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG 372 (550)
..++.-|.+++.. ++.++ -.+++|.... +++.+||++||-..+. .|......+.+.|.+.|+.++++-.+.
T Consensus 57 ~~lp~~e~~~L~~-~~~~f-laL~~~~~~~---~~~G~vIilp~~g~~~----d~p~~i~~LR~~L~~~GW~Tlsit~P~ 127 (310)
T PF12048_consen 57 RYLPADEVQWLQA-GEERF-LALWRPANSA---KPQGAVIILPDWGEHP----DWPGLIAPLRRELPDHGWATLSITLPD 127 (310)
T ss_pred hhCCHhhcEEeec-CCEEE-EEEEecccCC---CCceEEEEecCCCCCC----CcHhHHHHHHHHhhhcCceEEEecCCC
Confidence 3444456666665 33333 4567776542 5678999999954443 243344556788899999999988775
Q ss_pred CCCC---------------chhh-H-------------HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhH
Q 008873 373 TARR---------------GLKF-E-------------ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG 423 (550)
Q Consensus 373 ~g~~---------------~~~~-~-------------~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG 423 (550)
--.. +..- . .............-+.+++.++.+++ ..+|+|+||+.|+
T Consensus 128 ~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA 204 (310)
T PF12048_consen 128 PAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGA 204 (310)
T ss_pred cccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhH
Confidence 1000 0000 0 00000000011233455666666665 2459999999999
Q ss_pred HHHHHHHhhCCC-eeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHH
Q 008873 424 YLSAITLARFPD-VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 502 (550)
Q Consensus 424 ~~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~ 502 (550)
++++.++...+. ...++|.+++...... ........+.+++.|+|=|++.. ... ..+
T Consensus 205 ~~~~~~la~~~~~~~daLV~I~a~~p~~~--------------------~n~~l~~~la~l~iPvLDi~~~~-~~~-~~~ 262 (310)
T PF12048_consen 205 GWAARYLAEKPPPMPDALVLINAYWPQPD--------------------RNPALAEQLAQLKIPVLDIYSAD-NPA-SQQ 262 (310)
T ss_pred HHHHHHHhcCCCcccCeEEEEeCCCCcch--------------------hhhhHHHHhhccCCCEEEEecCC-ChH-HHH
Confidence 999999987754 4678888876422100 01223456778899999999877 322 222
Q ss_pred HHHHHHHHHHcC--CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 503 TARLINALVAAR--KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 503 ~~~~~~~l~~~~--~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.....+.+.++. ..++-...++..|.... ....+.++|..||.++
T Consensus 263 ~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 263 TAKQRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 223323332222 35666667777776533 2233889999999875
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0069 Score=56.30 Aligned_cols=208 Identities=18% Similarity=0.215 Sum_probs=113.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEEC-CCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ws-pDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|+.++.++++...+.+. .. ...... +||++++.. ... +.+++.++|+.+.+.......
T Consensus 23 ~i~~~~~~~~~~~~~~~~----------~~-~G~~~~~~~g~l~v~~--~~~----~~~~d~~~g~~~~~~~~~~~~--- 82 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLP----------GP-NGMAFDRPDGRLYVAD--SGG----IAVVDPDTGKVTVLADLPDGG--- 82 (246)
T ss_dssp EEEEEETTTTEEEEEESS----------SE-EEEEEECTTSEEEEEE--TTC----EEEEETTTTEEEEEEEEETTC---
T ss_pred EEEEEECCCCeEEEEecC----------CC-ceEEEEccCCEEEEEE--cCc----eEEEecCCCcEEEEeeccCCC---
Confidence 578899999888766552 12 334455 787765443 221 455599999988887753210
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCC-----c--cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCC
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTG-----F--RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP 211 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g-----~--~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~ 211 (550)
.+...+.+. ..++++-+|+++... . ..||+++.+ ++.+.+..+-.....+ .|++|++.||++....+
T Consensus 83 -~~~~~~ND~--~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi-~~s~dg~~lyv~ds~~~- 156 (246)
T PF08450_consen 83 -VPFNRPNDV--AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGI-AFSPDGKTLYVADSFNG- 156 (246)
T ss_dssp -SCTEEEEEE--EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEE-EEETTSSEEEEEETTTT-
T ss_pred -cccCCCceE--EEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccce-EECCcchheeecccccc-
Confidence 011111111 224555455544321 2 579999988 5555554432222344 49999999998866543
Q ss_pred ceeEEEEEEeCCCCCCCCCCCeee---CCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCCh
Q 008873 212 LESHLYCAKLYPDWNHTLEAPVKL---TNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTV 287 (550)
Q Consensus 212 ~~~~l~~v~~~~~g~~~~~~~~~l---t~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~ 287 (550)
.|+++++...+. .....+.+ ....+ -..+.++.+|...+.... ...|++++.. |+.+..+.-.
T Consensus 157 ---~i~~~~~~~~~~-~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~~~~p~-G~~~~~i~~p---- 223 (246)
T PF08450_consen 157 ---RIWRFDLDADGG-ELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIVVFDPD-GKLLREIELP---- 223 (246)
T ss_dssp ---EEEEEEEETTTC-CEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEEEEETT-SCEEEEEE-S----
T ss_pred ---eeEEEecccccc-ceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEEEECCC-ccEEEEEcCC----
Confidence 588888732232 00011222 22222 445678888865544332 2488999874 7755544321
Q ss_pred hhhhcCCCCCCeEEEEEcCCCcEEEE
Q 008873 288 PRIKRLQLEPPDIVQIQANDGTVLYG 313 (550)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~~ 313 (550)
...+..+.|-..+..+|..
T Consensus 224 -------~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 224 -------VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp -------SSSEEEEEEESTTSSEEEE
T ss_pred -------CCCEEEEEEECCCCCEEEE
Confidence 1134566665555555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.5e-06 Score=85.47 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=83.8
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCCchhhHHHHhhccC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARRGLKFEASIKHNCG 389 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~~~~~~~~~~~~~~ 389 (550)
+...+|.|...... + +||+|++|||.........+ ........+..+..+||.++||-. =|+...-.... .|
T Consensus 97 LylNV~tp~~~~~~-~-~pV~V~iHGG~~~~gs~~~~--~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~---~g 169 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES-K-LPVMVYIHGGGFQFGSASSF--EIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAA---PG 169 (545)
T ss_pred ceEEEeccCCCccC-C-CCEEEEEeCCceeeccccch--hhcCchhccccCCEEEEEecccceeceeeecCCCCC---CC
Confidence 77788888764211 2 89999999986432211111 111223455567899999999942 11100000111 24
Q ss_pred CCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCc
Q 008873 390 RIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPV 446 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~ 446 (550)
...+.|+..|++|+.+. -.-|+++|.|+|||.||..+..++.. ...+|+.+|..++.
T Consensus 170 N~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 170 NLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 45588999999999886 23599999999999999999777653 12477777777764
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0027 Score=64.76 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=95.9
Q ss_pred EEEEEECC-CCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAA-GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|++||+. .+...+ ++ ..-..++...+|+|+|+.++...... .+.+-++.+|++..........-..
T Consensus 226 tiriwd~~~~~~~~~-~l-------~gH~~~v~~~~f~p~g~~i~Sgs~D~----tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLK-TL-------KGHSTYVTSVAFSPDGNLLVSGSDDG----TVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred eEEEeeccCCCeEEE-Ee-------cCCCCceEEEEecCCCCEEEEecCCC----cEEEEeccCCeEEEeeeccCCceEE
Confidence 57888994 333322 22 23345778999999997666654433 2666677888876655433221111
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee---ecccccCeE-EEEEEeEeecCCEEEEEEcCCCCce
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL---GPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~---~~lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
. ..++++ ++..+..+| .|.++|..++.. +.+...... ......++|+++.|+..+.+..
T Consensus 294 ----~-------~f~~d~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~--- 357 (456)
T KOG0266|consen 294 ----L-------AFSPDGNLLVSASYDG--TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT--- 357 (456)
T ss_pred ----E-------EECCCCCEEEEcCCCc--cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe---
Confidence 1 123344 555554444 566777767663 233333222 1223458999987765544322
Q ss_pred eEEEEEEeCCCCCCCCCCCeeeCCC-C---ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 214 SHLYCAKLYPDWNHTLEAPVKLTNG-K---GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~lt~~-~---~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
..+|.+.- +. .+...... . ....+..+++++.++-... ...+++.+..++..+..+..
T Consensus 358 ~~~w~l~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~----d~~v~~~~~~s~~~~~~l~~ 419 (456)
T KOG0266|consen 358 LKLWDLRS---GK----SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE----DGSVYVWDSSSGGILQRLEG 419 (456)
T ss_pred EEEEEccC---Cc----ceeeecccCCcceeEecccccCCCCeEEEEeC----CceEEEEeCCccchhhhhcC
Confidence 45554432 11 11222211 1 1233345677776543322 24778888876664444443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0032 Score=61.78 Aligned_cols=169 Identities=10% Similarity=0.092 Sum_probs=81.1
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCc-cccCCCCCccCCCc-EEEEEcc-CCc
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDC-FTPLDKGVTKYSGG-FIWASEK-TGF 166 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~s~~-~g~ 166 (550)
.-++.++|||++++. .+...+.-.+|.++..+++........-+. ..+|+ +. +++++ ++|+... ++.
T Consensus 146 ~H~v~~~pdg~~v~v-~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--G~GPRh~~-------f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYV-PDLGADRVYVYDIDDDTGKLTPVDSIKVPP--GSGPRHLA-------FSPDGKYAYVVNELSNT 215 (345)
T ss_dssp EEEEEE-TTSSEEEE-EETTTTEEEEEEE-TTS-TEEEEEEEECST--TSSEEEEE-------E-TTSSEEEEEETTTTE
T ss_pred ceeEEECCCCCEEEE-EecCCCEEEEEEEeCCCceEEEeecccccc--CCCCcEEE-------EcCCcCEEEEecCCCCc
Confidence 345789999998754 455556556666666666644322211110 00111 11 23443 6665543 333
Q ss_pred cEEEEEeCCCceeecccc---------cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 167 RHLYLHDINGTCLGPITE---------GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~---------~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
-.+|.++..++..+.+.. +......+ ..+|||+.||.+....+ ...+|.++. .+|. ......+..
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-~ispdg~~lyvsnr~~~--sI~vf~~d~-~~g~--l~~~~~~~~ 289 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI-AISPDGRFLYVSNRGSN--SISVFDLDP-ATGT--LTLVQTVPT 289 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE-EE-TTSSEEEEEECTTT--EEEEEEECT-TTTT--EEEEEEEEE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeE-EEecCCCEEEEEeccCC--EEEEEEEec-CCCc--eEEEEEEeC
Confidence 344444433443322211 11123344 48999998887655433 245555543 1232 111222222
Q ss_pred -CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 238 -GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 238 -~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+..-..+.++|||++|+......+. -.++.+|.++|.
T Consensus 290 ~G~~Pr~~~~s~~g~~l~Va~~~s~~-v~vf~~d~~tG~ 327 (345)
T PF10282_consen 290 GGKFPRHFAFSPDGRYLYVANQDSNT-VSVFDIDPDTGK 327 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEETTTTE-EEEEEEETTTTE
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCe-EEEEEEeCCCCc
Confidence 2224566889999988776555443 355666766776
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.9e-05 Score=64.92 Aligned_cols=117 Identities=20% Similarity=0.224 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhh
Q 008873 399 GAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMH 478 (550)
Q Consensus 399 ~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 478 (550)
.-+|++++.. +.+..+.|.||||+.++....++|++|..+|+.+|+.|.+.+ +|...++...| ++|..
T Consensus 90 yerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardf--------fg~yyddDv~y--nsP~d 157 (227)
T COG4947 90 YERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDF--------FGGYYDDDVYY--NSPSD 157 (227)
T ss_pred HHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHh--------ccccccCceee--cChhh
Confidence 3445655532 356788999999999999999999999999999999875422 22222222222 45544
Q ss_pred hhhcCC----------CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 479 HVHKMK----------GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 479 ~~~~i~----------~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
++..+. ..+.+..|..|+..+ +...+.+.|..+.++..+.+..+..|..
T Consensus 158 ylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 158 YLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred hccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhccccccc
Confidence 444433 346667788777655 5567777787777887777776666654
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=61.84 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=37.7
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEEcC
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKP 318 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P 318 (550)
...+.||||+++++- .+++. .+.+.+-.+|+-+..+.. .....-...+..-.++-+......+|..|-.+.
T Consensus 370 Vn~V~fSPd~r~IAS--aSFDk--SVkLW~g~tGk~lasfRG---Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIAS--ASFDK--SVKLWDGRTGKFLASFRG---HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eeeEEECCCccEEEE--eeccc--ceeeeeCCCcchhhhhhh---ccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 667799999988742 23333 445555557764333321 112222334444444555555556677776543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0035 Score=55.66 Aligned_cols=178 Identities=11% Similarity=0.035 Sum_probs=93.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.+.+||...++...-.. ..+....+.|||||+++++..+.. .|-.+|+.+-+... +++-....+
T Consensus 88 ~ir~wd~r~~k~~~~i~---------~~~eni~i~wsp~g~~~~~~~kdD----~it~id~r~~~~~~--~~~~~~e~n- 151 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIE---------TKGENINITWSPDGEYIAVGNKDD----RITFIDARTYKIVN--EEQFKFEVN- 151 (313)
T ss_pred eEEEEEeccCcEEEEee---------ccCcceEEEEcCCCCEEEEecCcc----cEEEEEecccceee--hhcccceee-
Confidence 46677888776543221 133445679999999888875433 36677776544322 111110000
Q ss_pred cCccccCCCCCccC-CCcEEEEEccCCccEEEEEeCCCceeeccc---ccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 140 HDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCLGPIT---EGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT---~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.. .|. ++.+.|.+...|--+|-.++ ..++++ .+.-+.--+ .++|+|++++.-+.+- -..
T Consensus 152 --e~-------~w~~~nd~Fflt~GlG~v~ILsyp----sLkpv~si~AH~snCicI-~f~p~GryfA~GsADA---lvS 214 (313)
T KOG1407|consen 152 --EI-------SWNNSNDLFFLTNGLGCVEILSYP----SLKPVQSIKAHPSNCICI-EFDPDGRYFATGSADA---LVS 214 (313)
T ss_pred --ee-------eecCCCCEEEEecCCceEEEEecc----ccccccccccCCcceEEE-EECCCCceEeeccccc---eee
Confidence 00 122 23477777666766666655 233333 333222223 4899999887655432 245
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
||-++- +.=.+.++.-+ ..-..+||-||++|+-.. ..--|-+.++++|.++..+.
T Consensus 215 LWD~~E-------LiC~R~isRldwpVRTlSFS~dg~~lASaS----EDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 215 LWDVDE-------LICERCISRLDWPVRTLSFSHDGRMLASAS----EDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ccChhH-------hhhheeeccccCceEEEEeccCcceeeccC----ccceEEeEecccCCeEEEee
Confidence 553321 00123344322 356678999999875322 11244555667887655443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.005 Score=57.85 Aligned_cols=180 Identities=16% Similarity=0.206 Sum_probs=94.6
Q ss_pred EEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++|+.+++. ..+. .....+..+.|+|++++++..... ..|...++.+++.......... .+.
T Consensus 74 ~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~-~i~ 139 (289)
T cd00200 74 TIRLWDLETGECVRTLT---------GHTSYVSSVAFSPDGRILSSSSRD----KTIKVWDVETGKCLTTLRGHTD-WVN 139 (289)
T ss_pred eEEEEEcCcccceEEEe---------ccCCcEEEEEEcCCCCEEEEecCC----CeEEEEECCCcEEEEEeccCCC-cEE
Confidence 578888887543 2331 223467789999998766655412 2477788876665433321111 110
Q ss_pred ccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.+ .+++ +.+++....+| .|++++...++. ..+......+... .|+++++.+++.+. ++ .+
T Consensus 140 ---~~-------~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~-~~----~i 201 (289)
T cd00200 140 ---SV-------AFSPDGTFVASSSQDG--TIKLWDLRTGKCVATLTGHTGEVNSV-AFSPDGEKLLSSSS-DG----TI 201 (289)
T ss_pred ---EE-------EEcCcCCEEEEEcCCC--cEEEEEccccccceeEecCccccceE-EECCCcCEEEEecC-CC----cE
Confidence 01 1233 23555554344 466777654432 3333323234444 48999988887766 22 34
Q ss_pred EEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 217 YCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...++. .+. ....+.. ......+.+++++..+ +..+ ....++++++.+++....+
T Consensus 202 ~i~d~~-~~~----~~~~~~~~~~~i~~~~~~~~~~~~-~~~~---~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 202 KLWDLS-TGK----CLGTLRGHENGVNSVAFSPDGYLL-ASGS---EDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred EEEECC-CCc----eecchhhcCCceEEEEEcCCCcEE-EEEc---CCCcEEEEEcCCceeEEEc
Confidence 444552 121 1222312 2245667889986544 4433 2247888887666544443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0089 Score=53.67 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=99.3
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
..|.+||+.+|+.++.-. .-...+.++++|||.++|+.-+ |+. .|-+.+..++....+.+..+..|+.
T Consensus 85 ~~lrlWDl~~g~~t~~f~--------GH~~dVlsva~s~dn~qivSGS-rDk---Tiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFV--------GHTKDVLSVAFSTDNRQIVSGS-RDK---TIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred ceEEEEEecCCcEEEEEE--------ecCCceEEEEecCCCceeecCC-Ccc---eeeeeeecccEEEEEecCCCcCcEE
Confidence 357889999987765422 2234577899999999887654 332 2666677776666666554456875
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.. .|+|. .+..+++|-. .-..+-+.|+++-+.+.-=.| ...+.. ..+||||.... .+.++ -.++
T Consensus 153 cv-rfsP~-------~~~p~Ivs~s-~DktvKvWnl~~~~l~~~~~gh~~~v~t-~~vSpDGslca-sGgkd----g~~~ 217 (315)
T KOG0279|consen 153 CV-RFSPN-------ESNPIIVSAS-WDKTVKVWNLRNCQLRTTFIGHSGYVNT-VTVSPDGSLCA-SGGKD----GEAM 217 (315)
T ss_pred EE-EEcCC-------CCCcEEEEcc-CCceEEEEccCCcchhhccccccccEEE-EEECCCCCEEe-cCCCC----ceEE
Confidence 42 23332 1233334321 112445566666443321112 222333 35999996444 33333 3566
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
..++. .++ ...-+....-.+++.|||+.-.|+.... +.+-+.+++++..+
T Consensus 218 LwdL~-~~k----~lysl~a~~~v~sl~fspnrywL~~at~-----~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 218 LWDLN-EGK----NLYSLEAFDIVNSLCFSPNRYWLCAATA-----TSIKIWDLESKAVV 267 (315)
T ss_pred EEEcc-CCc----eeEeccCCCeEeeEEecCCceeEeeccC-----CceEEEeccchhhh
Confidence 66772 222 2222222333677899998644433221 24777777666543
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00069 Score=68.66 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=85.3
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc----hhh--HH
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG----LKF--EA 382 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~----~~~--~~ 382 (550)
..|...+++|..-. ++ ++.-||++...... +..... ....-.++||+++.-|- |+.+.. ..| ..
T Consensus 15 ~~i~fev~LP~~WN---gR----~~~~GgGG~~G~i~-~~~~~~-~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~ 84 (474)
T PF07519_consen 15 PNIRFEVWLPDNWN---GR----FLQVGGGGFAGGIN-YADGKA-SMATALARGYATASTDS-GHQGSAGSDDASFGNNP 84 (474)
T ss_pred ceEEEEEECChhhc---cC----eEEECCCeeeCccc-cccccc-ccchhhhcCeEEEEecC-CCCCCcccccccccCCH
Confidence 37888899998431 32 22334433322111 100000 02344589999999995 443331 112 12
Q ss_pred HHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 448 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~ 448 (550)
....+++...+.+...+.+.|++. ....+++-...|.|-||--+++.|.++|+-|.++++.+|..+
T Consensus 85 ~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~ 151 (474)
T PF07519_consen 85 EALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAIN 151 (474)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHH
Confidence 234566777788888888888876 335678899999999999999999999999999999999743
|
It also includes several bacterial homologues of unknown function. |
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0003 Score=64.62 Aligned_cols=226 Identities=10% Similarity=0.082 Sum_probs=116.8
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCC-CceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGP-CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 380 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~ 380 (550)
.+++.-| .++..++-... +++|+||-.|.-+ .... -|..-++........+.+.|+-+|.+|...-...+
T Consensus 3 ~v~t~~G-~v~V~v~G~~~-----~~kp~ilT~HDvGlNh~s---cF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~ga~~~ 73 (283)
T PF03096_consen 3 DVETPYG-SVHVTVQGDPK-----GNKPAILTYHDVGLNHKS---CFQGFFNFEDMQEILQNFCIYHIDAPGQEEGAATL 73 (283)
T ss_dssp EEEETTE-EEEEEEESS-------TTS-EEEEE--TT--HHH---HCHHHHCSHHHHHHHTTSEEEEEE-TTTSTT----
T ss_pred eeccCce-EEEEEEEecCC-----CCCceEEEeccccccchH---HHHHHhcchhHHHHhhceEEEEEeCCCCCCCcccc
Confidence 4555555 47777775433 3679999999832 2221 12111222222333567999999999986433222
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh---
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT--- 457 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--- 457 (550)
. ..+-.-.++++.+.+..+.++-.+ +.+.-+|--+|+++-+..|..+|+++.++|++.|...-..+..+..
T Consensus 74 p----~~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~ 147 (283)
T PF03096_consen 74 P----EGYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKL 147 (283)
T ss_dssp -----TT-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHH
T ss_pred c----ccccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHH
Confidence 2 222222355555555555554322 4688899999999999999999999999999988654222111110
Q ss_pred -------------------hhccCCCC--CCc---cccc-----cCC----------------hhhhhhcCCCcEEEEec
Q 008873 458 -------------------EKYMGLPS--EDP---VGYE-----YSS----------------VMHHVHKMKGKLLLVHG 492 (550)
Q Consensus 458 -------------------~~~~g~~~--~~~---~~~~-----~~~----------------~~~~~~~i~~P~lii~G 492 (550)
.+++|... .+. +.|+ ..+ .........+|+|++.|
T Consensus 148 ~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG 227 (283)
T PF03096_consen 148 SSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVG 227 (283)
T ss_dssp H-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEE
T ss_pred hcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEe
Confidence 01111000 010 1110 011 11123345689999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 493 MIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 493 ~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
..-+ ....+.++..+|. ....+++..+++|=.. ..+....+.+.+.=||+
T Consensus 228 ~~Sp--~~~~vv~~ns~Ld--p~~ttllkv~dcGglV-~eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 228 DNSP--HVDDVVEMNSKLD--PTKTTLLKVADCGGLV-LEEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp TTST--THHHHHHHHHHS---CCCEEEEEETT-TT-H-HHH-HHHHHHHHHHHHH
T ss_pred cCCc--chhhHHHHHhhcC--cccceEEEecccCCcc-cccCcHHHHHHHHHHHc
Confidence 9876 4567788888884 3478999999987655 23455556666666654
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0029 Score=57.68 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=61.0
Q ss_pred EEEEeEeecCCEEEEEEcCCCCceeEEEEEE-eCCCCCCCCCCCee------eCCCCceEEEEECCCCCEEEEeecCCCC
Q 008873 190 EQIVGVNEASGQVYFTGTLDGPLESHLYCAK-LYPDWNHTLEAPVK------LTNGKGKHVAVLDHNMRNFVDFHDSLDS 262 (550)
Q Consensus 190 ~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~-~~~~g~~~~~~~~~------lt~~~~~~~~~~s~dg~~l~~~~s~~~~ 262 (550)
..+. ++-.|+.|++...++- ...|.+. +...|... +++. +.....+..+-||.||.+++... .+
T Consensus 200 K~I~-~s~~g~~liiNtsDRv---IR~ye~~di~~~~r~~--e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s---~~ 270 (405)
T KOG1273|consen 200 KQII-VSRKGRFLIINTSDRV---IRTYEISDIDDEGRDG--EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS---AR 270 (405)
T ss_pred eEEE-EeccCcEEEEecCCce---EEEEehhhhcccCccC--CcChhHHHHHHHhhhhhhheeecCCccEEEecc---cc
Confidence 3443 7778888877766432 3444333 21122211 2221 11222356678999998875543 45
Q ss_pred CCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCC
Q 008873 263 PPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDG 308 (550)
Q Consensus 263 p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (550)
.-.||+.....|..++.|..+. .+.+....+..+..+......|
T Consensus 271 aHaLYIWE~~~GsLVKILhG~k--gE~l~DV~whp~rp~i~si~sg 314 (405)
T KOG1273|consen 271 AHALYIWEKSIGSLVKILHGTK--GEELLDVNWHPVRPIIASIASG 314 (405)
T ss_pred ceeEEEEecCCcceeeeecCCc--hhheeecccccceeeeeeccCC
Confidence 5689999988899888776542 2455556665555554444334
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0027 Score=60.91 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=102.8
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|+-||..||+-..+. .+.+|+..++.+..+ .
T Consensus 239 T~L~Wn~~G~~LatG~~~G------------------------------------~~riw~~~G~l~~tl---------~ 273 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDG------------------------------------EARIWNKDGNLISTL---------G 273 (524)
T ss_pred ceEEecCCCCeEEEeecCc------------------------------------EEEEEecCchhhhhh---------h
Confidence 6789999999999976541 356778887765544 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~ 163 (550)
.-.+.+.++.|+.+|.+|+...-.. .+.+.|..+|+..+.++..+..-.+. .|-. +.|. .+..
T Consensus 274 ~HkgPI~slKWnk~G~yilS~~vD~----ttilwd~~~g~~~q~f~~~s~~~lDV-----------dW~~~~~F~-ts~t 337 (524)
T KOG0273|consen 274 QHKGPIFSLKWNKKGTYILSGGVDG----TTILWDAHTGTVKQQFEFHSAPALDV-----------DWQSNDEFA-TSST 337 (524)
T ss_pred ccCCceEEEEEcCCCCEEEeccCCc----cEEEEeccCceEEEeeeeccCCccce-----------EEecCceEe-ecCC
Confidence 3355788999999999886653222 26778899999988876543211110 1222 2233 3444
Q ss_pred CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-CCceE
Q 008873 164 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-GKGKH 242 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~~~ 242 (550)
+|--++|.++-++-. ..++.+.-.+... -|.|.|. |+.++..++. ..||.+.- ++. ...|.. ...+.
T Consensus 338 d~~i~V~kv~~~~P~-~t~~GH~g~V~al-k~n~tg~-LLaS~SdD~T--lkiWs~~~--~~~-----~~~l~~Hskei~ 405 (524)
T KOG0273|consen 338 DGCIHVCKVGEDRPV-KTFIGHHGEVNAL-KWNPTGS-LLASCSDDGT--LKIWSMGQ--SNS-----VHDLQAHSKEIY 405 (524)
T ss_pred CceEEEEEecCCCcc-eeeecccCceEEE-EECCCCc-eEEEecCCCe--eEeeecCC--Ccc-----hhhhhhhcccee
Confidence 566677777654432 2333344455555 4888885 4455555543 77886543 111 112221 12356
Q ss_pred EEEECCCCC
Q 008873 243 VAVLDHNMR 251 (550)
Q Consensus 243 ~~~~s~dg~ 251 (550)
++.|||+|.
T Consensus 406 t~~wsp~g~ 414 (524)
T KOG0273|consen 406 TIKWSPTGP 414 (524)
T ss_pred eEeecCCCC
Confidence 667888663
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.8e-05 Score=75.41 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=84.9
Q ss_pred eEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc--------hhHhHHHHhCCcEEE
Q 008873 299 DIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV--------DMRAQYLRSKGILVW 366 (550)
Q Consensus 299 ~~~~~~~-~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~--------~~~~~~l~~~G~~vv 366 (550)
..+.+.. ..+..+.+|++..... ++..|+|++++|||+.......| ++.. ......+.+ -..++
T Consensus 50 Gy~~v~~~~~~~~lFyw~~~s~~~---~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~~~~l 125 (462)
T PTZ00472 50 GYFDIPGNQTDKHYFYWAFGPRNG---NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-EAYVI 125 (462)
T ss_pred EEEEeCCCCCCceEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-ccCeE
Confidence 3445532 2356788898876643 25679999999999976532111 1100 000011222 25678
Q ss_pred EECC-CCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhC----------C
Q 008873 367 KLDN-RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARF----------P 434 (550)
Q Consensus 367 ~~d~-rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~----------~ 434 (550)
.+|. +|+|.+-...... ...-....+|+..+++...++ +.....++.|+|+||||..+..++.+- .
T Consensus 126 ~iDqP~G~G~S~~~~~~~--~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~ 203 (462)
T PTZ00472 126 YVDQPAGVGFSYADKADY--DHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLY 203 (462)
T ss_pred EEeCCCCcCcccCCCCCC--CCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCce
Confidence 8885 5877653211100 000112356777777765544 545568999999999999887666531 1
Q ss_pred CeeEEEEEcCCcCCc
Q 008873 435 DVFQCAVSGAPVTSW 449 (550)
Q Consensus 435 ~~~~~~v~~~~~~~~ 449 (550)
--+++++++.|.++.
T Consensus 204 inLkGi~IGNg~~dp 218 (462)
T PTZ00472 204 INLAGLAVGNGLTDP 218 (462)
T ss_pred eeeEEEEEeccccCh
Confidence 137899988887653
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0068 Score=61.74 Aligned_cols=176 Identities=7% Similarity=0.032 Sum_probs=96.5
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecC-ceee
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELD-SWVN 138 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~-~~~~ 138 (550)
+.+||..+|- .-+|+. +-.-.++.+.|+.+|+.++..+-.+. +-.-|+..... |..+. +.+ .+..
T Consensus 374 VKvWn~~Sgf-C~vTFt-------eHts~Vt~v~f~~~g~~llssSLDGt----VRAwDlkRYrNfRTft~-P~p~Qfsc 440 (893)
T KOG0291|consen 374 VKVWNTQSGF-CFVTFT-------EHTSGVTAVQFTARGNVLLSSSLDGT----VRAWDLKRYRNFRTFTS-PEPIQFSC 440 (893)
T ss_pred EEEEeccCce-EEEEec-------cCCCceEEEEEEecCCEEEEeecCCe----EEeeeecccceeeeecC-CCceeeeE
Confidence 4567777663 223442 33346778899999987766543332 33334444433 22222 211 1111
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeec-ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~-lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
. +.++-+ ++++...+ ..+||+.+..+|+... |..++..|.... ++|+|..|+-.+-+.. ..+
T Consensus 441 v-----------avD~sGelV~AG~~d-~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~~~~~~LaS~SWDkT---VRi 504 (893)
T KOG0291|consen 441 V-----------AVDPSGELVCAGAQD-SFEIFVWSVQTGQLLDILSGHEGPVSGLS-FSPDGSLLASGSWDKT---VRI 504 (893)
T ss_pred E-----------EEcCCCCEEEeeccc-eEEEEEEEeecCeeeehhcCCCCcceeeE-EccccCeEEeccccce---EEE
Confidence 1 113323 55554433 3579999988887664 444465666554 8999986664444433 455
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
|.+=- .+ . +.+.+.-......++|+|||+.++....+ .+|-..|...+.
T Consensus 505 W~if~---s~-~--~vEtl~i~sdvl~vsfrPdG~elaVaTld----gqItf~d~~~~~ 553 (893)
T KOG0291|consen 505 WDIFS---SS-G--TVETLEIRSDVLAVSFRPDGKELAVATLD----GQITFFDIKEAV 553 (893)
T ss_pred EEeec---cC-c--eeeeEeeccceeEEEEcCCCCeEEEEEec----ceEEEEEhhhce
Confidence 53321 11 1 23344333346777999999999776544 367777765544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0063 Score=59.89 Aligned_cols=128 Identities=10% Similarity=0.034 Sum_probs=61.1
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEE-EEEeecCcee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV-ILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~ 137 (550)
.|.++|+.+++.. ++..+ ..-..++.|+||++++....... .+.++|.++.+... |.........
T Consensus 59 ~vsviD~~~~~~v~~i~~G----------~~~~~i~~s~DG~~~~v~n~~~~---~v~v~D~~tle~v~~I~~~~~~~~~ 125 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIKVG----------GNPRGIAVSPDGKYVYVANYEPG---TVSVIDAETLEPVKTIPTGGMPVDG 125 (369)
T ss_dssp EEEEEETTSSSEEEEEE-S----------SEEEEEEE--TTTEEEEEEEETT---EEEEEETTT--EEEEEE--EE-TTT
T ss_pred eEEEEECCcccEEEEEecC----------CCcceEEEcCCCCEEEEEecCCC---ceeEeccccccceeecccccccccc
Confidence 3678999998764 55442 24456899999998866543332 58899999988643 3222111000
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCce---eecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC---LGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~---~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
..++....-. +...+.|++.... -.+||++|....+ .+.+..+.+-.. . .|+++|++++...+
T Consensus 126 -~~~Rv~aIv~--s~~~~~fVv~lkd--~~~I~vVdy~d~~~~~~~~i~~g~~~~D-~-~~dpdgry~~va~~ 191 (369)
T PF02239_consen 126 -PESRVAAIVA--SPGRPEFVVNLKD--TGEIWVVDYSDPKNLKVTTIKVGRFPHD-G-GFDPDGRYFLVAAN 191 (369)
T ss_dssp -S---EEEEEE---SSSSEEEEEETT--TTEEEEEETTTSSCEEEEEEE--TTEEE-E-EE-TTSSEEEEEEG
T ss_pred -cCCCceeEEe--cCCCCEEEEEEcc--CCeEEEEEeccccccceeeecccccccc-c-ccCcccceeeeccc
Confidence 0000000000 0112224444333 3478999854432 233333443322 2 48999988877544
|
... |
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=64.04 Aligned_cols=209 Identities=16% Similarity=0.135 Sum_probs=109.7
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCC-----cEEEEECCCCCC----CCchhhHHHH-------hhccCC
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-----ILVWKLDNRGTA----RRGLKFEASI-------KHNCGR 390 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G-----~~vv~~d~rG~g----~~~~~~~~~~-------~~~~~~ 390 (550)
.+|+| |+||..+... ..+.+...|...+ -.++.+|--|+- .....-...+ ...-+.
T Consensus 45 ~iPTI-fIhGsgG~as-------S~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~ 116 (288)
T COG4814 45 AIPTI-FIHGSGGTAS-------SLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGL 116 (288)
T ss_pred ccceE-EEecCCCChh-------HHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchh
Confidence 56764 5899666543 2233455555444 456777766642 1111100000 000011
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC-----eeEEEEEcCCcCCcccc--cchhhhhccCC
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWDGY--DTFYTEKYMGL 463 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-----~~~~~v~~~~~~~~~~~--~~~~~~~~~g~ 463 (550)
.-..-+..++.+|.++..+ .++-++||||||....+.+..+.+ .+...|+.++..+-... +.-..+-....
T Consensus 117 ~~s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~ 194 (288)
T COG4814 117 DQSKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDG 194 (288)
T ss_pred hHHHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccC
Confidence 1134567788889888744 578899999999999888876532 23445555443331000 00000000001
Q ss_pred CCCCccccccCChhhhhhcC--CCcEEEEecCCC------CCCChHHHHHHHHHHHHcCCCeEEEEcCC--CCCcCCCCC
Q 008873 464 PSEDPVGYEYSSVMHHVHKM--KGKLLLVHGMID------ENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRRHR 533 (550)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~i--~~P~lii~G~~D------~~v~~~~~~~~~~~l~~~~~~~~~~~~p~--~~H~~~~~~ 533 (550)
|......|.++- .....++ ..-+|+|.|+-| ..||...+...+..+...++.+.-.+|++ +.|.-.+ +
T Consensus 195 ~~~~~t~y~~y~-~~n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~lh-e 272 (288)
T COG4814 195 PGLIKTPYYDYI-AKNYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKLH-E 272 (288)
T ss_pred ccccCcHHHHHH-HhcceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhccC-C
Confidence 100001111000 0111222 246899999764 67888888888887776666665556655 5787533 2
Q ss_pred cHHHHHHHHHHHHHH
Q 008873 534 DRIYMEERIWEFIER 548 (550)
Q Consensus 534 ~~~~~~~~~~~fl~~ 548 (550)
+ ..+...+..||.+
T Consensus 273 n-~~v~~yv~~FLw~ 286 (288)
T COG4814 273 N-PTVAKYVKNFLWE 286 (288)
T ss_pred C-hhHHHHHHHHhhc
Confidence 2 3556778888754
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=66.46 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=47.3
Q ss_pred CCcEEEEECCCCCC--CCchhhHHHHhhccCCCchHHHHHHHHHHHHcC---CCCCCceEEEEechhHHHHHHHHhhCC-
Q 008873 361 KGILVWKLDNRGTA--RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFP- 434 (550)
Q Consensus 361 ~G~~vv~~d~rG~g--~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~~a~~~~~~~~- 434 (550)
..+.++++|+.... ..|.... ...+-+..+++.+.+.. ...+++|.|+||||||.++-.++...+
T Consensus 38 ~~~d~ft~df~~~~s~~~g~~l~---------~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~ 108 (225)
T PF07819_consen 38 SHFDFFTVDFNEELSAFHGRTLQ---------RQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNY 108 (225)
T ss_pred cceeEEEeccCccccccccccHH---------HHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhcccc
Confidence 35788999987532 1121111 01233445556655432 346789999999999999988876533
Q ss_pred --CeeEEEEEcCC
Q 008873 435 --DVFQCAVSGAP 445 (550)
Q Consensus 435 --~~~~~~v~~~~ 445 (550)
+.++.+|..+.
T Consensus 109 ~~~~v~~iitl~t 121 (225)
T PF07819_consen 109 DPDSVKTIITLGT 121 (225)
T ss_pred ccccEEEEEEEcC
Confidence 46777777653
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0061 Score=53.80 Aligned_cols=177 Identities=5% Similarity=0.024 Sum_probs=97.2
Q ss_pred EEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
++.+||+.+++..+ ++++ .-.+.+..+.|--||+.++...... .-.||.+.. -.++++.....+.-
T Consensus 62 hvRlyD~~S~np~Pv~t~e-------~h~kNVtaVgF~~dgrWMyTgseDg--t~kIWdlR~--~~~qR~~~~~spVn-- 128 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFE-------GHTKNVTAVGFQCDGRWMYTGSEDG--TVKIWDLRS--LSCQRNYQHNSPVN-- 128 (311)
T ss_pred eeEEEEccCCCCCceeEEe-------ccCCceEEEEEeecCeEEEecCCCc--eEEEEeccC--cccchhccCCCCcc--
Confidence 35567888877643 3332 2235788899999999998765443 335665544 45566555432210
Q ss_pred ccCccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCc-eeecccccCeE-EEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 139 LHDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGT-CLGPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~-~~~~lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
. .. ..|+ .=++..+++| +|++.|+... ..++|...+-. +... .+.+||+.+.-.-++. ...
T Consensus 129 ~---vv-------lhpnQteLis~dqsg--~irvWDl~~~~c~~~liPe~~~~i~sl-~v~~dgsml~a~nnkG---~cy 192 (311)
T KOG0315|consen 129 T---VV-------LHPNQTELISGDQSG--NIRVWDLGENSCTHELIPEDDTSIQSL-TVMPDGSMLAAANNKG---NCY 192 (311)
T ss_pred e---EE-------ecCCcceEEeecCCC--cEEEEEccCCccccccCCCCCcceeeE-EEcCCCcEEEEecCCc---cEE
Confidence 0 00 1222 2466777777 4666665443 34566654332 3333 4889998777554443 245
Q ss_pred EEEEEeCCCCCCCCCCCeeeC---CCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLT---NGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt---~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
+|++-. ... ....+.++ ... ....+-+|||+++|+...++ ..+++.++++
T Consensus 193 vW~l~~--~~~--~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd----ktv~iwn~~~ 246 (311)
T KOG0315|consen 193 VWRLLN--HQT--ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD----KTVKIWNTDD 246 (311)
T ss_pred EEEccC--CCc--cccceEhhheecccceEEEEEECCCCcEEEeecCC----ceEEEEecCC
Confidence 554432 111 11222222 222 25667899999998755443 3556655543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00083 Score=63.21 Aligned_cols=213 Identities=12% Similarity=0.161 Sum_probs=104.3
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
++++|.++|..+.+-- ..-...+.+-+|-|||..++.-+.+ ..++..+.++... ..|-...
T Consensus 293 ~~lwDv~tgd~~~~y~-------~~~~~S~~sc~W~pDg~~~V~Gs~d----r~i~~wdlDgn~~--------~~W~gvr 353 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYP-------SGLGFSVSSCAWCPDGFRFVTGSPD----RTIIMWDLDGNIL--------GNWEGVR 353 (519)
T ss_pred eeeccCCcchhhhhcc-------cCcCCCcceeEEccCCceeEecCCC----CcEEEecCCcchh--------hcccccc
Confidence 6889999998764311 1113466778999999987665443 2488999887541 1222110
Q ss_pred -CccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 141 -DCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 141 -~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
+...-+ +.++|+ .++.... -.+|.+++.++..-+ .++... .+.++. .|.||+.+...-... +.++|
T Consensus 354 ~~~v~dl----ait~Dgk~vl~v~~--d~~i~l~~~e~~~dr~lise~~-~its~~-iS~d~k~~LvnL~~q---ei~LW 422 (519)
T KOG0293|consen 354 DPKVHDL----AITYDGKYVLLVTV--DKKIRLYNREARVDRGLISEEQ-PITSFS-ISKDGKLALVNLQDQ---EIHLW 422 (519)
T ss_pred cceeEEE----EEcCCCcEEEEEec--ccceeeechhhhhhhccccccC-ceeEEE-EcCCCcEEEEEcccC---eeEEe
Confidence 000000 112233 3333221 246777776654444 344332 344443 788887655443332 35666
Q ss_pred EEEeCCCCCCCCCCCeeeCCCC-c---eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcC
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGK-G---KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~-~---~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~ 293 (550)
++. ... .+++...-. + +.++ |..-...+ +.|+. ....+|+.+..+|+.+.+|+..+. ..+=.
T Consensus 423 --Dl~-e~~----lv~kY~Ghkq~~fiIrSC-Fgg~~~~f--iaSGS-ED~kvyIWhr~sgkll~~LsGHs~---~vNcV 488 (519)
T KOG0293|consen 423 --DLE-ENK----LVRKYFGHKQGHFIIRSC-FGGGNDKF--IASGS-EDSKVYIWHRISGKLLAVLSGHSK---TVNCV 488 (519)
T ss_pred --ecc-hhh----HHHHhhcccccceEEEec-cCCCCcce--EEecC-CCceEEEEEccCCceeEeecCCcc---eeeEE
Confidence 552 111 122222111 1 1222 22222233 33433 335899999988987777765432 23333
Q ss_pred CCCCCeEEEEEcC-CCcEEEEEEEcCC
Q 008873 294 QLEPPDIVQIQAN-DGTVLYGALYKPD 319 (550)
Q Consensus 294 ~~~~~~~~~~~~~-~g~~l~~~~~~P~ 319 (550)
.+.+....+|-+. |..+| .++.|.
T Consensus 489 swNP~~p~m~ASasDDgtI--RIWg~~ 513 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTI--RIWGPS 513 (519)
T ss_pred ecCCCCHHHhhccCCCCeE--EEecCC
Confidence 3444444444332 33334 444554
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00053 Score=56.60 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCC--Ccccc
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE--DPVGY 471 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 471 (550)
+..++-++.++.+.. | ..++|+|.|.|||.+.+++.+.. ++++ ++.|.+-. ......++|.+.. .-+.|
T Consensus 43 ~~a~~ele~~i~~~~-~-~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P----~e~l~gylg~~en~ytg~~y 113 (191)
T COG3150 43 QQALKELEKAVQELG-D-ESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRP----YELLTGYLGRPENPYTGQEY 113 (191)
T ss_pred HHHHHHHHHHHHHcC-C-CCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCc----hhhhhhhcCCCCCCCCcceE
Confidence 334444444444421 2 34899999999999999998752 2333 34443211 1111223333321 11223
Q ss_pred ccCC----h--hhhhhcCCCc--EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 472 EYSS----V--MHHVHKMKGK--LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 472 ~~~~----~--~~~~~~i~~P--~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
.-.+ - ...+..++.| +.++.-+.|++....++.+.+..+ ...+..+++|.|.+ .....++|+
T Consensus 114 ~le~~hI~~l~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~~---f~~~l~~i~ 183 (191)
T COG3150 114 VLESRHIATLCVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFKG---FSRHLQRIK 183 (191)
T ss_pred EeehhhHHHHHHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCccccc---hHHhHHHHH
Confidence 1111 0 1123333333 344455669988888887777654 34567889999854 556678888
Q ss_pred HHHH
Q 008873 544 EFIE 547 (550)
Q Consensus 544 ~fl~ 547 (550)
.|+.
T Consensus 184 aF~g 187 (191)
T COG3150 184 AFKG 187 (191)
T ss_pred HHhc
Confidence 8864
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.5e-05 Score=66.12 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=48.9
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcE---EEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~---vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
|| |++||...... ..|..+...|.++||. |.+++|-...... ...... ........+.+.|+.+.+
T Consensus 3 PV-VlVHG~~~~~~------~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~~--~~~~~~--~~~~~~~~l~~fI~~Vl~ 71 (219)
T PF01674_consen 3 PV-VLVHGTGGNAY------SNWSTLAPYLKAAGYCDSEVYALTYGSGNGSP--SVQNAH--MSCESAKQLRAFIDAVLA 71 (219)
T ss_dssp -E-EEE--TTTTTC------GGCCHHHHHHHHTT--CCCEEEE--S-CCHHT--HHHHHH--B-HHHHHHHHHHHHHHHH
T ss_pred CE-EEECCCCcchh------hCHHHHHHHHHHcCCCcceeEeccCCCCCCCC--cccccc--cchhhHHHHHHHHHHHHH
Confidence 55 56899654221 2556678999999999 7999995433211 111111 001113556666666665
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.- .. +|=|+||||||.++-+++..
T Consensus 72 ~T--Ga-kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 72 YT--GA-KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp HH--T---EEEEEETCHHHHHHHHHHH
T ss_pred hh--CC-EEEEEEcCCcCHHHHHHHHH
Confidence 42 34 89999999999999888753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0081 Score=58.67 Aligned_cols=76 Identities=8% Similarity=0.011 Sum_probs=36.4
Q ss_pred eEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 194 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
.++|||+.||.. ++.. ....+|.++. ++.. ......+..+..-..+.++|||++|+...... .--.++.++..+
T Consensus 234 ~~~pdg~~lyv~-~~~~-~~I~v~~i~~--~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-~~v~v~~~~~~~ 307 (330)
T PRK11028 234 HITPDGRHLYAC-DRTA-SLISVFSVSE--DGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-HHISVYEIDGET 307 (330)
T ss_pred EECCCCCEEEEe-cCCC-CeEEEEEEeC--CCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccC-CcEEEEEEcCCC
Confidence 378999888875 4322 1245554443 3310 00011111122233458899999886654322 212344444344
Q ss_pred Cc
Q 008873 274 GS 275 (550)
Q Consensus 274 g~ 275 (550)
|.
T Consensus 308 g~ 309 (330)
T PRK11028 308 GL 309 (330)
T ss_pred Cc
Confidence 44
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0019 Score=59.72 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=58.0
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 483 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 483 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
..+|-|.+.+..|..++....+++.+..++.|.+++...|.+..|.-....+.+.+++.+.+|+
T Consensus 177 ~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 177 SRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 4579999999999999999999999999999999999999999998777788888888888774
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0013 Score=61.06 Aligned_cols=153 Identities=12% Similarity=0.130 Sum_probs=89.1
Q ss_pred CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 86 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 86 ~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
+..++.+.+|.+||..++..+-.. ..|.+-++++|...+|......+.. -+ -|+||+ ++|.+.-+
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS~gs---ssi~iWdpdtg~~~pL~~~glgg~s-------lL----kwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTASFGS---SSIMIWDPDTGQKIPLIPKGLGGFS-------LL----KWSPDGDVLFAATCD 259 (445)
T ss_pred CCceeeEEEEcCCCCEEeecccCc---ceEEEEcCCCCCcccccccCCCcee-------eE----EEcCCCCEEEEeccc
Confidence 346789999999999887765333 2366668888887777632222211 11 356665 66665545
Q ss_pred CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC----CC----------
Q 008873 165 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT----LE---------- 230 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~----~~---------- 230 (550)
+-..||..+..-.+.+.++... .+.. ..|||+|+.|+|+.... ..||++.. ++... ..
T Consensus 260 avfrlw~e~q~wt~erw~lgsg-rvqt-acWspcGsfLLf~~sgs----p~lysl~f--~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKERWILGSG-RVQT-ACWSPCGSFLLFACSGS----PRLYSLTF--DGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred ceeeeehhcccceecceeccCC-ceee-eeecCCCCEEEEEEcCC----ceEEEEee--cCCCccccCcccceeeeeecc
Confidence 5556774332222334444322 3333 35999999999998754 46777766 22200 00
Q ss_pred --CCeeeCC----CCceEEEEECCCCCEEEEeecCC
Q 008873 231 --APVKLTN----GKGKHVAVLDHNMRNFVDFHDSL 260 (550)
Q Consensus 231 --~~~~lt~----~~~~~~~~~s~dg~~l~~~~s~~ 260 (550)
+....+. .++.+..+|.|.|.+++.++-..
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 0000111 12356678999999998887553
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.021 Score=58.25 Aligned_cols=166 Identities=10% Similarity=0.113 Sum_probs=85.7
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEEC-CCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI-KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 162 (550)
.....+..++|||||++++...... .|.+.++ +.+...+... ....++.. . .+.+++ +++...
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~----tiriwd~~~~~~~~~~l~-gH~~~v~~---~-------~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDK----TLRIWDLKDDGRNLKTLK-GHSTYVTS---V-------AFSPDGNLLVSGS 265 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCc----eEEEeeccCCCeEEEEec-CCCCceEE---E-------EecCCCCEEEEec
Confidence 3355788899999999777665443 2555555 4444433222 11122211 1 123333 554443
Q ss_pred cCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-
Q 008873 163 KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG- 240 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~- 240 (550)
.++ .+.+.+..+++ .+.|....-.+... .+++||..|+-. ..++ ...+| ++. .+... -.+.+.....
T Consensus 266 ~D~--tvriWd~~~~~~~~~l~~hs~~is~~-~f~~d~~~l~s~-s~d~--~i~vw--d~~-~~~~~--~~~~~~~~~~~ 334 (456)
T KOG0266|consen 266 DDG--TVRIWDVRTGECVRKLKGHSDGISGL-AFSPDGNLLVSA-SYDG--TIRVW--DLE-TGSKL--CLKLLSGAENS 334 (456)
T ss_pred CCC--cEEEEeccCCeEEEeeeccCCceEEE-EECCCCCEEEEc-CCCc--cEEEE--ECC-CCcee--eeecccCCCCC
Confidence 344 34555555544 44555444344544 488998777655 3332 24555 551 12100 0112222222
Q ss_pred --eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 241 --KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 241 --~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...+.|+|++++++....+ ..+.+.++..+...+..
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d----~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLD----RTLKLWDLRSGKSVGTY 372 (456)
T ss_pred CceeEEEECCCCcEEEEecCC----CeEEEEEccCCcceeee
Confidence 3556899999988766544 36666777666544433
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.9e-05 Score=71.61 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=62.4
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhH-HHHh--CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW 402 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~l~~--~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 402 (550)
.+.|++|++||-..... ...|.. .+.+ ++.. .+++|+++|+...-. ..+..+..... ..-..+...+..
T Consensus 69 ~~~pt~iiiHGw~~~~~-~~~~~~---~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~n~~--~vg~~la~~l~~ 140 (331)
T PF00151_consen 69 PSKPTVIIIHGWTGSGS-SESWIQ---DMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVANTR--LVGRQLAKFLSF 140 (331)
T ss_dssp TTSEEEEEE--TT-TT--TTTHHH---HHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHHHHH--HHHHHHHHHHHH
T ss_pred CCCCeEEEEcCcCCccc-chhHHH---HHHHHHHhhccCCceEEEEcchhhcc--ccccchhhhHH--HHHHHHHHHHHH
Confidence 46799999999544331 122321 1233 3444 589999999974211 12222221100 012334455667
Q ss_pred HHHcCCCCCCceEEEEechhHHHHHHHHhhCCC--eeEEEEEcCCcC
Q 008873 403 LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAPVT 447 (550)
Q Consensus 403 l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~--~~~~~v~~~~~~ 447 (550)
|.....++.++|.|+|||+||++|..++-.... ++..+....|..
T Consensus 141 L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 141 LINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred HHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 765556789999999999999999999887655 667777777653
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.62 E-value=9.4e-05 Score=75.10 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCC----CchHHHHHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR----IDAEDQLTGAEWL 403 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~----~~~~D~~~~~~~l 403 (550)
.|++|++-| -+... ..+ .......++..+.|-.|+++.+|-.|.|-. +......++.. ..+.|+...++++
T Consensus 29 gpifl~~gg-E~~~~--~~~-~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P-~~~~s~~nL~yLt~~QALaD~a~F~~~~ 103 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIE--PFW-INNGFMWELAKEFGALVVALEHRYYGKSQP-FGDLSTENLRYLTSEQALADLAYFIRYV 103 (434)
T ss_dssp SEEEEEE---SS-HH--HHH-HH-HHHHHHHHHHTEEEEEE--TTSTTB-T-TGGGGGSTTTC-SHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCccc--hhh-hcCChHHHHHHHcCCcEEEeehhhhcCCCC-ccccchhhHHhcCHHHHHHHHHHHHHHH
Confidence 588888844 22211 111 111233444457899999999998887642 22222222222 2478888899998
Q ss_pred HHcC-CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC
Q 008873 404 IKQG-LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 448 (550)
Q Consensus 404 ~~~~-~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~ 448 (550)
..+. ..+..+++++|.||||.+++++-.++|++|.++++.++++.
T Consensus 104 ~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 104 KKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 8653 34556899999999999999999999999999988776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.054 Score=49.69 Aligned_cols=180 Identities=12% Similarity=0.118 Sum_probs=96.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|..+++.+.+-.+. + ..-...+.+++-||-+...+-.+... . |.+-|+..-+++-+.......
T Consensus 81 tIryLsl~dNkylRY-F-------~GH~~~V~sL~~sP~~d~FlS~S~D~--t--vrLWDlR~~~cqg~l~~~~~p---- 144 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRY-F-------PGHKKRVNSLSVSPKDDTFLSSSLDK--T--VRLWDLRVKKCQGLLNLSGRP---- 144 (311)
T ss_pred ceEEEEeecCceEEE-c-------CCCCceEEEEEecCCCCeEEecccCC--e--EEeeEecCCCCceEEecCCCc----
Confidence 466667776654332 1 12234677788888776443333221 1 444445555665554433221
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC---cee--eccccc---CeEEEEEEeEeecCCEEEEEEcCCCC
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING---TCL--GPITEG---DWMVEQIVGVNEASGQVYFTGTLDGP 211 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~---~~~--~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~ 211 (550)
.. +.+|.|++|+.-.++. .|-++|+.. |.. -.++.+ +|. . ..+|+|||.|+++.+.
T Consensus 145 --i~-------AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~--~-l~FS~dGK~iLlsT~~--- 208 (311)
T KOG1446|consen 145 --IA-------AFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWT--D-LEFSPDGKSILLSTNA--- 208 (311)
T ss_pred --ce-------eECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCcccee--e-eEEcCCCCEEEEEeCC---
Confidence 11 3467787776543332 677777533 211 123322 332 2 3489999999888664
Q ss_pred ceeEEEEEEeCCCCCCCCCCCeeeCC--CCc--eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 212 LESHLYCAKLYPDWNHTLEAPVKLTN--GKG--KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 212 ~~~~l~~v~~~~~g~~~~~~~~~lt~--~~~--~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
..+|.++.- +|. ....++. ..+ -.++.|+||++.++ ..++ -..|.+.++++|.+...+..
T Consensus 209 --s~~~~lDAf-~G~----~~~tfs~~~~~~~~~~~a~ftPds~Fvl-~gs~---dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 209 --SFIYLLDAF-DGT----VKSTFSGYPNAGNLPLSATFTPDSKFVL-SGSD---DGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred --CcEEEEEcc-CCc----EeeeEeeccCCCCcceeEEECCCCcEEE-EecC---CCcEEEEEcCCCcEeeEecC
Confidence 356677752 443 1111111 111 24568999998654 3332 24788888888987655544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0036 Score=59.95 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=98.6
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
+|.||+++++..++...- .-.+..+-.+..|||+.+|++.-+ ...|+++.+.|++.- +...-++-+.
T Consensus 282 ~ysyDle~ak~~k~~~~~-----g~e~~~~e~FeVShd~~fia~~G~----~G~I~lLhakT~eli--~s~KieG~v~-- 348 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPY-----GVEEKSMERFEVSHDSNFIAIAGN----NGHIHLLHAKTKELI--TSFKIEGVVS-- 348 (514)
T ss_pred EEEeeccccccccccCCC-----CcccchhheeEecCCCCeEEEccc----CceEEeehhhhhhhh--heeeeccEEe--
Confidence 789999999988774421 112446677889999998877632 235999999988732 2211111110
Q ss_pred CccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCce-eeccc-ccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 141 DCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTC-LGPIT-EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~~-~~~lT-~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.+.+ +.| +.++++.. ..++|++|+.... .++.+ .|.-.-..+ ..|.+|.+++. ++..+ -.+||
T Consensus 349 -~~~f-------sSdsk~l~~~~~--~GeV~v~nl~~~~~~~rf~D~G~v~gts~-~~S~ng~ylA~-GS~~G--iVNIY 414 (514)
T KOG2055|consen 349 -DFTF-------SSDSKELLASGG--TGEVYVWNLRQNSCLHRFVDDGSVHGTSL-CISLNGSYLAT-GSDSG--IVNIY 414 (514)
T ss_pred -eEEE-------ecCCcEEEEEcC--CceEEEEecCCcceEEEEeecCccceeee-eecCCCceEEe-ccCcc--eEEEe
Confidence 1112 222 36666644 4489999976532 22222 222222233 47788874443 33333 47888
Q ss_pred EEEeCCCCCCCCCCCeeeCC----CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 218 CAKLYPDWNHTLEAPVKLTN----GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.-+-...++ .|+.+.. ...+.+..|++|+..|++. |+. .+-.+.++++.
T Consensus 415 d~~s~~~s~----~PkPik~~dNLtt~Itsl~Fn~d~qiLAia-S~~-~knalrLVHvP 467 (514)
T KOG2055|consen 415 DGNSCFAST----NPKPIKTVDNLTTAITSLQFNHDAQILAIA-SRV-KKNALRLVHVP 467 (514)
T ss_pred ccchhhccC----CCCchhhhhhhheeeeeeeeCcchhhhhhh-hhc-cccceEEEecc
Confidence 644221222 2222221 1246777899999766544 443 33366777764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0018 Score=60.44 Aligned_cols=116 Identities=16% Similarity=0.260 Sum_probs=62.6
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce--EEEEEeecCceeeccCccccCCCCCccCCC-cEEEEEcc
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR--KVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEK 163 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~ 163 (550)
..-+..++|||||+.|+.-+..+ .|.+.|+++|+. +.|..+ ..|+..- .+.|.. ..++ +.+..+.+
T Consensus 157 ~~WVlcvawsPDgk~iASG~~dg----~I~lwdpktg~~~g~~l~gH--~K~It~L-awep~h----l~p~~r~las~sk 225 (480)
T KOG0271|consen 157 KNWVLCVAWSPDGKKIASGSKDG----SIRLWDPKTGQQIGRALRGH--KKWITAL-AWEPLH----LVPPCRRLASSSK 225 (480)
T ss_pred ccEEEEEEECCCcchhhccccCC----eEEEecCCCCCcccccccCc--ccceeEE-eecccc----cCCCccceecccC
Confidence 34567899999999998776554 388888998874 233222 2344220 111111 1122 24444455
Q ss_pred CCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEE
Q 008873 164 TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 220 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~ 220 (550)
+|.-.|| |...+. .+.|+.+.-.|.-+ .| .|..+.+++..+.. ..+|+..
T Consensus 226 Dg~vrIW--d~~~~~~~~~lsgHT~~VTCv-rw--GG~gliySgS~Drt--Ikvw~a~ 276 (480)
T KOG0271|consen 226 DGSVRIW--DTKLGTCVRTLSGHTASVTCV-RW--GGEGLIYSGSQDRT--IKVWRAL 276 (480)
T ss_pred CCCEEEE--EccCceEEEEeccCccceEEE-EE--cCCceEEecCCCce--EEEEEcc
Confidence 6654444 444443 34444444444432 24 56668888877653 6777543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.001 Score=62.86 Aligned_cols=184 Identities=13% Similarity=0.166 Sum_probs=103.0
Q ss_pred CCccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCC
Q 008873 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGG 80 (550)
Q Consensus 1 ~~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~ 80 (550)
+.|...+.|.|+|++|+=+++|.+= .+||+.+++.--+.
T Consensus 261 ~~RVs~VafHPsG~~L~TasfD~tW------------------------------------RlWD~~tk~ElL~Q----- 299 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTASFDSTW------------------------------------RLWDLETKSELLLQ----- 299 (459)
T ss_pred hhhheeeeecCCCceeeecccccch------------------------------------hhcccccchhhHhh-----
Confidence 3577889999999999988887431 46899987653321
Q ss_pred CCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEE
Q 008873 81 TDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWA 160 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (550)
..-...+.+++|-|||.+++...... -..|| |+.+|.+......-. .+.++- .|+|+|+-..
T Consensus 300 ---EGHs~~v~~iaf~~DGSL~~tGGlD~--~~RvW--DlRtgr~im~L~gH~------k~I~~V-----~fsPNGy~lA 361 (459)
T KOG0272|consen 300 ---EGHSKGVFSIAFQPDGSLAATGGLDS--LGRVW--DLRTGRCIMFLAGHI------KEILSV-----AFSPNGYHLA 361 (459)
T ss_pred ---cccccccceeEecCCCceeeccCccc--hhhee--ecccCcEEEEecccc------cceeeE-----eECCCceEEe
Confidence 23345788899999999887643222 12344 456776654443211 111111 4678887655
Q ss_pred Ecc-CCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 161 SEK-TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 161 s~~-~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
+-. ++.-.||- +.... .-.+-.+.-.|..+ .++|+...++.++.-++. ..||.-. +.. ..+.|..-
T Consensus 362 Tgs~Dnt~kVWD--LR~r~~ly~ipAH~nlVS~V-k~~p~~g~fL~TasyD~t--~kiWs~~---~~~----~~ksLaGH 429 (459)
T KOG0272|consen 362 TGSSDNTCKVWD--LRMRSELYTIPAHSNLVSQV-KYSPQEGYFLVTASYDNT--VKIWSTR---TWS----PLKSLAGH 429 (459)
T ss_pred ecCCCCcEEEee--ecccccceecccccchhhhe-EecccCCeEEEEcccCcc--eeeecCC---Ccc----cchhhcCC
Confidence 422 22223333 32221 11222222234444 388876677777776653 6676322 121 23344432
Q ss_pred C-ceEEEEECCCCCEEEE
Q 008873 239 K-GKHVAVLDHNMRNFVD 255 (550)
Q Consensus 239 ~-~~~~~~~s~dg~~l~~ 255 (550)
+ .+.++.+|+|+..++-
T Consensus 430 e~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 430 EGKVISLDISPDSQAIAT 447 (459)
T ss_pred ccceEEEEeccCCceEEE
Confidence 2 3778899999987643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0073 Score=56.37 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=72.2
Q ss_pred CeEEEEEEECCCCceEEEEc-ccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc
Q 008873 57 VKVRLGVVSAAGGPVSWMDL-QCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
.++.++-+|-..|+...|.. .+-|.. .........+..||||++|+. ++|..+.-.+|.++..+|+...+......+
T Consensus 213 stV~v~~y~~~~g~~~~lQ~i~tlP~d-F~g~~~~aaIhis~dGrFLYa-sNRg~dsI~~f~V~~~~g~L~~~~~~~teg 290 (346)
T COG2706 213 STVDVLEYNPAVGKFEELQTIDTLPED-FTGTNWAAAIHISPDGRFLYA-SNRGHDSIAVFSVDPDGGKLELVGITPTEG 290 (346)
T ss_pred CEEEEEEEcCCCceEEEeeeeccCccc-cCCCCceeEEEECCCCCEEEE-ecCCCCeEEEEEEcCCCCEEEEEEEeccCC
Confidence 34566667766677776633 212211 223345677899999998754 589888778999999999866554332221
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEcc-CCccEEEEEeCCCceeecccc
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEK-TGFRHLYLHDINGTCLGPITE 184 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g~~~l~~~~~~~~~~~~lT~ 184 (550)
=. ...|.+. +.+++++++.+ +..-.+|.+|.++|+...+..
T Consensus 291 ~~--PR~F~i~------~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 291 QF--PRDFNIN------PSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred cC--CccceeC------CCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 00 0113331 23346666554 456788999988887666543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.032 Score=59.82 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=68.5
Q ss_pred ceeEEEEECCCCeEEEEEEecCC-CceEEEEEECCCCc--eEEEEEeecCceeeccCccccCCCCCccC--CCcEEEEEc
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKTGQ--RKVILVEELDSWVNLHDCFTPLDKGVTKY--SGGFIWASE 162 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~ 162 (550)
..+..+.|||||++|++..+... +..+|+++++++|+ ...|.... +.. .|. +++|+|.+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~----------~~~-----~w~~D~~~~~y~~~ 191 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE----------PSF-----VWANDSWTFYYVRK 191 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc----------eEE-----EEeeCCCEEEEEEe
Confidence 45677899999998888866654 56789999999997 33332211 000 233 345777665
Q ss_pred cCC---ccEEEEEeCCCc--eeeccccc---CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 163 KTG---FRHLYLHDINGT--CLGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 163 ~~g---~~~l~~~~~~~~--~~~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
+.+ ..+||++++.++ +.+.|-.+ .+.+. ...+.|++.+++.+......+..++.
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~--~~~s~d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVS--LHKTTSKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEE--EEEcCCCCEEEEEEECCccccEEEEE
Confidence 432 378999998776 44445443 12221 22345888887666654433344443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.032 Score=55.00 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=97.1
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE-EEEEeecCcee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~ 137 (550)
+|.++|.++.+.. .+... ......+.+||||++++.. +|.. .|.++|+.+++.. ++.....+.-
T Consensus 17 ~v~viD~~t~~~~~~i~~~---------~~~h~~~~~s~Dgr~~yv~-~rdg---~vsviD~~~~~~v~~i~~G~~~~~- 82 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTG---------GAPHAGLKFSPDGRYLYVA-NRDG---TVSVIDLATGKVVATIKVGGNPRG- 82 (369)
T ss_dssp EEEEEETTT-SEEEEEE-S---------TTEEEEEE-TT-SSEEEEE-ETTS---EEEEEETTSSSEEEEEE-SSEEEE-
T ss_pred EEEEEECCCCeEEEEEcCC---------CCceeEEEecCCCCEEEEE-cCCC---eEEEEECCcccEEEEEecCCCcce-
Confidence 5788999987754 44331 1123456799999976655 5642 5999999999853 3322111110
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee-ecccccCe-------EEEEEEeEeecCCEEEEEEcC
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL-GPITEGDW-------MVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~-------~~~~~~~~s~dg~~l~f~~~~ 208 (550)
+ ..++|+ ++++++. ....+-++|..+.+. +.+..+.. .+..+. -++.+..+++...+
T Consensus 83 -----i-------~~s~DG~~~~v~n~-~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv-~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 83 -----I-------AVSPDGKYVYVANY-EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV-ASPGRPEFVVNLKD 148 (369)
T ss_dssp -----E-------EE--TTTEEEEEEE-ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE-E-SSSSEEEEEETT
T ss_pred -----E-------EEcCCCCEEEEEec-CCCceeEeccccccceeecccccccccccCCCceeEE-ecCCCCEEEEEEcc
Confidence 1 123444 7776654 124678888766543 33332211 123333 46676666655554
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEe
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 279 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~ 279 (550)
. -+++.++.. +.. . ...+.+..+...+...|+|++++++...... ..+.++|+++++....
T Consensus 149 ~----~~I~vVdy~-d~~-~-~~~~~i~~g~~~~D~~~dpdgry~~va~~~s---n~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 149 T----GEIWVVDYS-DPK-N-LKVTTIKVGRFPHDGGFDPDGRYFLVAANGS---NKIAVIDTKTGKLVAL 209 (369)
T ss_dssp T----TEEEEEETT-TSS-C-EEEEEEE--TTEEEEEE-TTSSEEEEEEGGG---TEEEEEETTTTEEEEE
T ss_pred C----CeEEEEEec-ccc-c-cceeeecccccccccccCcccceeeeccccc---ceeEEEeeccceEEEE
Confidence 3 378888873 221 0 1123333444567889999999986654433 2888999887765433
|
... |
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0077 Score=54.88 Aligned_cols=229 Identities=12% Similarity=0.057 Sum_probs=129.0
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccc-hhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTV-DMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~-~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
.++..+++..|. ++..++--.. +++|+||-.|.-+-.... .|..-+ ...++.+..+ +.|+.+|.+|+-.-
T Consensus 22 ~~e~~V~T~~G~-v~V~V~Gd~~-----~~kpaiiTyhDlglN~~s--cFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~g 92 (326)
T KOG2931|consen 22 CQEHDVETAHGV-VHVTVYGDPK-----GNKPAIITYHDLGLNHKS--CFQGFFNFPDMAEILEH-FCVYHVDAPGQEDG 92 (326)
T ss_pred ceeeeecccccc-EEEEEecCCC-----CCCceEEEecccccchHh--HhHHhhcCHhHHHHHhh-eEEEecCCCccccC
Confidence 466677776664 7777775332 346889999983322110 011111 1124455566 99999999987422
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc--
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-- 454 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-- 454 (550)
. .....++..-..+|+.+-+-.+..+- .-+.|+-+|--.|+++-.+.|..||+++-++|++++...-..+..
T Consensus 93 A----p~~p~~y~yPsmd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~ 166 (326)
T KOG2931|consen 93 A----PSFPEGYPYPSMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWA 166 (326)
T ss_pred C----ccCCCCCCCCCHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHH
Confidence 1 12222222334566666665555543 335688889999999999999999999999999877543211100
Q ss_pred --------------------hhhhhccCCCC---------------------CCcc----ccccCChhhh-----hhcCC
Q 008873 455 --------------------FYTEKYMGLPS---------------------EDPV----GYEYSSVMHH-----VHKMK 484 (550)
Q Consensus 455 --------------------~~~~~~~g~~~---------------------~~~~----~~~~~~~~~~-----~~~i~ 484 (550)
+...+++|... .+.. .|.....+.. ...++
T Consensus 167 ~~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlk 246 (326)
T KOG2931|consen 167 YNKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLK 246 (326)
T ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCcccc
Confidence 00111111110 1111 1111111110 11456
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
+|+|++.|++-+. .+...++..+|.. ....++...+++-... .+....+.+.+.=||
T Consensus 247 c~vllvvGd~Sp~--~~~vv~~n~~Ldp--~~ttllk~~d~g~l~~-e~qP~kl~ea~~~Fl 303 (326)
T KOG2931|consen 247 CPVLLVVGDNSPH--VSAVVECNSKLDP--TYTTLLKMADCGGLVQ-EEQPGKLAEAFKYFL 303 (326)
T ss_pred ccEEEEecCCCch--hhhhhhhhcccCc--ccceEEEEcccCCccc-ccCchHHHHHHHHHH
Confidence 9999999998763 4466667666632 4667888888877652 223344445554444
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.064 Score=54.98 Aligned_cols=164 Identities=11% Similarity=0.091 Sum_probs=79.4
Q ss_pred CceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 87 EEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
...+..++|+|++. +++...... .|.+.|+.+++.......... .+. .+ .|++++ +++.+..+
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~Dg----tVrIWDl~tg~~~~~l~~h~~-~V~------sl----a~spdG~lLatgs~D 189 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADM----VVNVWDVERGKAVEVIKCHSD-QIT------SL----EWNLDGSLLCTTSKD 189 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCC----EEEEEECCCCeEEEEEcCCCC-ceE------EE----EEECCCCEEEEecCC
Confidence 45677899999975 555443221 366667787765433221111 110 00 244544 55554444
Q ss_pred CccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee---CCCCc
Q 008873 165 GFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL---TNGKG 240 (550)
Q Consensus 165 g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l---t~~~~ 240 (550)
| .|.++|+.+++. ..+....-.......|.++++.|+-.+.... ....|...++. ... .+... .....
T Consensus 190 g--~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr-~~~----~p~~~~~~d~~~~ 261 (493)
T PTZ00421 190 K--KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTR-KMA----SPYSTVDLDQSSA 261 (493)
T ss_pred C--EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCC-CCC----CceeEeccCCCCc
Confidence 4 466777655432 2332221111112348888776665443211 11334444652 111 12221 11123
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
...+.+++|++.++....+ ...+.++++.+++.
T Consensus 262 ~~~~~~d~d~~~L~lggkg---Dg~Iriwdl~~~~~ 294 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKG---EGNIRCFELMNERL 294 (493)
T ss_pred eEEEEEcCCCCEEEEEEeC---CCeEEEEEeeCCce
Confidence 4445789999876554321 23677788766653
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.02 Score=56.44 Aligned_cols=163 Identities=8% Similarity=0.000 Sum_probs=88.3
Q ss_pred eeEEEEECCCCeEEEEEEecCCC-ceEEEEEECCCCceE---EEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc-
Q 008873 89 YLARVNWMHGNILTAQVLNRSQT-KLKVLKFDIKTGQRK---VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK- 163 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~-~~~l~~~~~~~g~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~- 163 (550)
.+..+.|||-+.+|+++.....+ ..++-++.+.+++.- .|..-.+-. +.+ +.+++-+-+-.+|
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDck-------LhW-----Qk~gdyLcvkvdR~ 415 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCK-------LHW-----QKSGDYLCVKVDRH 415 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccE-------EEe-----ccCCcEEEEEEEee
Confidence 34567899999999999755432 446777777776532 233221110 001 1234434444443
Q ss_pred --C---C-cc--EEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee
Q 008873 164 --T---G-FR--HLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL 235 (550)
Q Consensus 164 --~---g-~~--~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l 235 (550)
. | +. +|+++.-..=-...+-- .-.+-.+ .|.|.|+++...+..........|.+.. .+. ++..+
T Consensus 416 tK~~~~g~f~n~eIfrireKdIpve~vel-ke~vi~F-aWEP~gdkF~vi~g~~~k~tvsfY~~e~--~~~----~~~lV 487 (698)
T KOG2314|consen 416 TKSKVKGQFSNLEIFRIREKDIPVEVVEL-KESVIAF-AWEPHGDKFAVISGNTVKNTVSFYAVET--NIK----KPSLV 487 (698)
T ss_pred ccccccceEeeEEEEEeeccCCCceeeec-chheeee-eeccCCCeEEEEEccccccceeEEEeec--CCC----chhhh
Confidence 2 2 33 44555321100111110 1122334 4999999988887655444578888875 232 23232
Q ss_pred CCC--CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 236 TNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 236 t~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
..- .....+.|||.|+.++...-.. .-..++-+|+.
T Consensus 488 k~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~ 525 (698)
T KOG2314|consen 488 KELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTD 525 (698)
T ss_pred hhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecc
Confidence 221 3466778999999887665443 44577777764
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=67.06 Aligned_cols=144 Identities=14% Similarity=0.055 Sum_probs=78.8
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc-h--------hHhHHHHhCCcEEEEE
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV-D--------MRAQYLRSKGILVWKL 368 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~-~--------~~~~~l~~~G~~vv~~ 368 (550)
+.+....+..+.+|++..... +++.|+||++.|||++......| ++.. . .....+. +-..+|.+
T Consensus 16 l~~~~~~~~~lfyw~~~s~~~---~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~-~~an~l~i 91 (415)
T PF00450_consen 16 LPVNDNENAHLFYWFFESRND---PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWN-KFANLLFI 91 (415)
T ss_dssp EEECTTTTEEEEEEEEE-SSG---GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GG-GTSEEEEE
T ss_pred EecCCCCCcEEEEEEEEeCCC---CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccc-cccceEEE
Confidence 344444567899998876652 25779999999999976532111 1100 0 0011111 23789999
Q ss_pred CCC-CCCCCchhhHHHHhhccCCCchHHHHHHHHHHH-HcCCCCCCceEEEEechhHHHHHHHHh----hC------CCe
Q 008873 369 DNR-GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKVGHIGLYGWSYGGYLSAITLA----RF------PDV 436 (550)
Q Consensus 369 d~r-G~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~~a~~~~~----~~------~~~ 436 (550)
|.+ |+|.|-....... ..-.....+|+..+++... +.+.....++.|.|.||||..+-.++. .. .-.
T Consensus 92 D~PvGtGfS~~~~~~~~-~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 92 DQPVGTGFSYGNDPSDY-VWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp --STTSTT-EESSGGGG-S-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred eecCceEEeeccccccc-cchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 944 7775532211110 0000112456666655443 345566678999999999997765553 22 235
Q ss_pred eEEEEEcCCcCCc
Q 008873 437 FQCAVSGAPVTSW 449 (550)
Q Consensus 437 ~~~~v~~~~~~~~ 449 (550)
+++++++.|+++.
T Consensus 171 LkGi~IGng~~dp 183 (415)
T PF00450_consen 171 LKGIAIGNGWIDP 183 (415)
T ss_dssp EEEEEEESE-SBH
T ss_pred cccceecCccccc
Confidence 8999999998774
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0074 Score=56.14 Aligned_cols=177 Identities=10% Similarity=0.036 Sum_probs=96.4
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceE----------EEE
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRK----------VIL 129 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~----------~l~ 129 (550)
+.+||-.+..+..|+. .....+..++|-|-+. .++.. -|.. --||..+...--.+ ++.
T Consensus 122 Vriy~ksst~pt~Lks--------~sQrnvtclawRPlsaselavg-Cr~g--IciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 122 VRIYDKSSTCPTKLKS--------VSQRNVTCLAWRPLSASELAVG-CRAG--ICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred EEEeccCCCCCceecc--------hhhcceeEEEeccCCcceeeee-ecce--eEEEEcCcccccccccccccccchhhe
Confidence 4455666555555533 3356788899999876 44332 2321 23444433322212 122
Q ss_pred EeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeeccc-ccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 130 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT-EGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT-~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
..++.. + ...+ .|.+|+..+.+-.-|-.+|.+.+.+++...+|- .+-..+.. .-|||||.+|+.. +.
T Consensus 191 ~~pgh~--p----Vtsm----qwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl-LkwSPdgd~lfaA-t~ 258 (445)
T KOG2139|consen 191 QDPGHN--P----VTSM----QWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL-LKWSPDGDVLFAA-TC 258 (445)
T ss_pred eCCCCc--e----eeEE----EEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceee-EEEcCCCCEEEEe-cc
Confidence 221110 0 1111 466777555555556788999999888777776 33222333 3599999866544 43
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
+.. ..|+... .... ..+.+..........|||+|+.|.|+++.. |.+|.+..
T Consensus 259 dav--frlw~e~---q~wt---~erw~lgsgrvqtacWspcGsfLLf~~sgs---p~lysl~f 310 (445)
T KOG2139|consen 259 DAV--FRLWQEN---QSWT---KERWILGSGRVQTACWSPCGSFLLFACSGS---PRLYSLTF 310 (445)
T ss_pred cce--eeeehhc---ccce---ecceeccCCceeeeeecCCCCEEEEEEcCC---ceEEEEee
Confidence 321 4444211 1110 122333323456668999999999998764 57888776
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0024 Score=55.32 Aligned_cols=89 Identities=22% Similarity=0.193 Sum_probs=66.4
Q ss_pred hhHhHHHHhCCcEEEEECCCCCC-CCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHH
Q 008873 352 DMRAQYLRSKGILVWKLDNRGTA-RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITL 430 (550)
Q Consensus 352 ~~~~~~l~~~G~~vv~~d~rG~g-~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~ 430 (550)
..+..+|.+.+|..|.+-.|.+- |+|. ..+ ..+.+|+..+++++..... .+.|.++|||-|..-.++++
T Consensus 56 ~~L~~~lde~~wslVq~q~~Ssy~G~Gt---~sl-----k~D~edl~~l~~Hi~~~~f--St~vVL~GhSTGcQdi~yYl 125 (299)
T KOG4840|consen 56 TMLNRYLDENSWSLVQPQLRSSYNGYGT---FSL-----KDDVEDLKCLLEHIQLCGF--STDVVLVGHSTGCQDIMYYL 125 (299)
T ss_pred HHHHHHHhhccceeeeeecccccccccc---ccc-----cccHHHHHHHHHHhhccCc--ccceEEEecCccchHHHHHH
Confidence 33567788999999999988652 2442 112 2347888888887765542 35899999999999999888
Q ss_pred hhC--CCeeEEEEEcCCcCCcc
Q 008873 431 ARF--PDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 431 ~~~--~~~~~~~v~~~~~~~~~ 450 (550)
++. +..++++|+.+|+.|..
T Consensus 126 Tnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 126 TNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred HhccchHHHHHHHHhCccchhh
Confidence 543 56789999999999865
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.055 Score=48.61 Aligned_cols=152 Identities=9% Similarity=0.130 Sum_probs=76.4
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
+.++|||.|++||-.++|.+- .++.-..++-..++.- .
T Consensus 65 RsvAwsp~g~~La~aSFD~t~------------------------------------~Iw~k~~~efecv~~l------E 102 (312)
T KOG0645|consen 65 RSVAWSPHGRYLASASFDATV------------------------------------VIWKKEDGEFECVATL------E 102 (312)
T ss_pred eeeeecCCCcEEEEeeccceE------------------------------------EEeecCCCceeEEeee------e
Confidence 788999999999999887432 1222222332222221 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEE---EEEeecCceeeccCccccCCCCCccCCC-cEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV---ILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWA 160 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (550)
.-+.-+-.++||++|.+|+..+ |.. .-.||.++ +.++... |..+..+. +.. .|.|. +++|.
T Consensus 103 GHEnEVK~Vaws~sG~~LATCS-RDK-SVWiWe~d-eddEfec~aVL~~HtqDV-----K~V-------~WHPt~dlL~S 167 (312)
T KOG0645|consen 103 GHENEVKCVAWSASGNYLATCS-RDK-SVWIWEID-EDDEFECIAVLQEHTQDV-----KHV-------IWHPTEDLLFS 167 (312)
T ss_pred ccccceeEEEEcCCCCEEEEee-CCC-eEEEEEec-CCCcEEEEeeeccccccc-----cEE-------EEcCCcceeEE
Confidence 2344567789999999999885 432 22455555 3344332 22222110 000 23332 25544
Q ss_pred EccCCccEEEEEeCCCce---eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 161 SEKTGFRHLYLHDINGTC---LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~~---~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
..-+.--.+|..+. +.. ...|....-.+.... +++.|.+|.-.+++.. ..||+
T Consensus 168 ~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~-F~~~G~rl~s~sdD~t---v~Iw~ 223 (312)
T KOG0645|consen 168 CSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLA-FDNIGSRLVSCSDDGT---VSIWR 223 (312)
T ss_pred eccCCeEEEEeecC-CCCeeEEEEecCccceEEEEE-ecCCCceEEEecCCcc---eEeee
Confidence 32222223444332 222 223433333444443 7888888775554432 56666
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00037 Score=69.46 Aligned_cols=88 Identities=14% Similarity=0.003 Sum_probs=60.1
Q ss_pred cchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHH
Q 008873 350 TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 429 (550)
Q Consensus 350 ~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~ 429 (550)
.|..+.+.|.+.||.+ ..|.+|.|..-+.. ... . ..++++.+.++.+.++. ...+|.|+||||||.++...
T Consensus 109 ~~~~li~~L~~~GY~~-~~dL~g~gYDwR~~-~~~-~----~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~f 179 (440)
T PLN02733 109 YFHDMIEQLIKWGYKE-GKTLFGFGYDFRQS-NRL-P----ETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKCF 179 (440)
T ss_pred HHHHHHHHHHHcCCcc-CCCcccCCCCcccc-ccH-H----HHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHHH
Confidence 3455688899999866 78999887543321 000 1 11456666666665542 34689999999999999998
Q ss_pred HhhCCCe----eEEEEEcCCc
Q 008873 430 LARFPDV----FQCAVSGAPV 446 (550)
Q Consensus 430 ~~~~~~~----~~~~v~~~~~ 446 (550)
+..+|+. ++..|++++.
T Consensus 180 l~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 180 MSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHCCHhHHhHhccEEEECCC
Confidence 8877753 5666766554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.06 Score=52.81 Aligned_cols=190 Identities=11% Similarity=0.046 Sum_probs=95.8
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEec--CCCceEEEEEECCCCceEEEEEeecCce
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR--SQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r--~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
...+.+|.++++...+... .....-..+.++||+++|+.+... ....-..|.++.++|+.+.+......+-
T Consensus 15 I~~~~~d~~~g~l~~~~~~-------~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTV-------AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEETTTTEEEEEEEE-------EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred EEEEEEcCCCCCceEeeee-------cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 4445556688887655431 011122336789999988777554 2344456778888788877766442211
Q ss_pred eeccCccccCCCCCccCCC-cEEEEEcc-CCccEEEEEeCCCceeec--ccc-----------cCeEEEEEEeEeecCCE
Q 008873 137 VNLHDCFTPLDKGVTKYSG-GFIWASEK-TGFRHLYLHDINGTCLGP--ITE-----------GDWMVEQIVGVNEASGQ 201 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~~~s~~-~g~~~l~~~~~~~~~~~~--lT~-----------~~~~~~~~~~~s~dg~~ 201 (550)
.+.+ + ..+++ +++++++- +|.-.+|-++.+|.-... +.. ..-+.... .++|||+.
T Consensus 88 ~p~~--i-------~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v-~~~pdg~~ 157 (345)
T PF10282_consen 88 SPCH--I-------AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV-VFSPDGRF 157 (345)
T ss_dssp CEEE--E-------EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE-EE-TTSSE
T ss_pred CcEE--E-------EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE-EECCCCCE
Confidence 1110 0 11333 37777764 444444555544321111 110 01123333 48999999
Q ss_pred EEEEEcCCCCceeEEEEEEeCCCCC-CCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 202 VYFTGTLDGPLESHLYCAKLYPDWN-HTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 202 l~f~~~~~~~~~~~l~~v~~~~~g~-~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
+|..-...+ ...+|.++- ... ........+..+.|-..+.|+||+++++.+..-. ..|.+++..
T Consensus 158 v~v~dlG~D--~v~~~~~~~--~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---~~v~v~~~~ 222 (345)
T PF10282_consen 158 VYVPDLGAD--RVYVYDIDD--DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS---NTVSVFDYD 222 (345)
T ss_dssp EEEEETTTT--EEEEEEE-T--TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT---TEEEEEEEE
T ss_pred EEEEecCCC--EEEEEEEeC--CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC---CcEEEEeec
Confidence 987655433 244444443 221 0000112344455666778999999876665433 355555554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0037 Score=59.87 Aligned_cols=167 Identities=10% Similarity=0.059 Sum_probs=92.2
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|+++-..|++.. .+ .-++.+..++||.||+.|+.+...+ +||..|+....+.......+...
T Consensus 326 ~I~lLhakT~eli~s~----------KieG~v~~~~fsSdsk~l~~~~~~G----eV~v~nl~~~~~~~rf~D~G~v~-- 389 (514)
T KOG2055|consen 326 HIHLLHAKTKELITSF----------KIEGVVSDFTFSSDSKELLASGGTG----EVYVWNLRQNSCLHRFVDDGSVH-- 389 (514)
T ss_pred eEEeehhhhhhhhhee----------eeccEEeeEEEecCCcEEEEEcCCc----eEEEEecCCcceEEEEeecCccc--
Confidence 5777777777542 12 2256788999999999776664332 69999998876654443332210
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEe--CCCceeecccccC---eEEEEEEeEeecCCEEEEEEcCCCCc
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHD--INGTCLGPITEGD---WMVEQIVGVNEASGQVYFTGTLDGPL 212 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~--~~~~~~~~lT~~~---~~~~~~~~~s~dg~~l~f~~~~~~~~ 212 (550)
+..+. .+.++ ++.+-...|.-+||-.+ ..++.+++++.-+ ..+... .+++|++.|++.++....
T Consensus 390 -gts~~-------~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl-~Fn~d~qiLAiaS~~~kn- 459 (514)
T KOG2055|consen 390 -GTSLC-------ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL-QFNHDAQILAIASRVKKN- 459 (514)
T ss_pred -eeeee-------ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee-eeCcchhhhhhhhhcccc-
Confidence 11111 12333 44444456888888765 2345566655421 123333 589999888887775321
Q ss_pred eeEEEEEEeCC-CCCCCCCCCeeeCCCCceEEEEECCCCCEEEEe
Q 008873 213 ESHLYCAKLYP-DWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 213 ~~~l~~v~~~~-~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~ 256 (550)
...|..++-.. -.+ =|+.-+.-.....++|||.|.++++-
T Consensus 460 alrLVHvPS~TVFsN----fP~~n~~vg~vtc~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 460 ALRLVHVPSCTVFSN----FPTSNTKVGHVTCMAFSPNSGYLAVG 500 (514)
T ss_pred ceEEEeccceeeecc----CCCCCCcccceEEEEecCCCceEEee
Confidence 13333332100 111 01121111235667999999887654
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00041 Score=63.78 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=58.9
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHH-HHHHHHHcCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT-GAEWLIKQGL 408 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~ 408 (550)
.|+++|++.++.. .|..+++.|...++.|+.+.++|.+...... ..++++.+ .++.+.+..
T Consensus 2 ~lf~~p~~gG~~~-------~y~~la~~l~~~~~~v~~i~~~~~~~~~~~~----------~si~~la~~y~~~I~~~~- 63 (229)
T PF00975_consen 2 PLFCFPPAGGSAS-------SYRPLARALPDDVIGVYGIEYPGRGDDEPPP----------DSIEELASRYAEAIRARQ- 63 (229)
T ss_dssp EEEEESSTTCSGG-------GGHHHHHHHTTTEEEEEEECSTTSCTTSHEE----------SSHHHHHHHHHHHHHHHT-
T ss_pred eEEEEcCCccCHH-------HHHHHHHhCCCCeEEEEEEecCCCCCCCCCC----------CCHHHHHHHHHHHhhhhC-
Confidence 4678899877643 3444566666557999999999876222111 11233222 233333322
Q ss_pred CCCCceEEEEechhHHHHHHHHhh---CCCeeEEEEEcCC
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAP 445 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~---~~~~~~~~v~~~~ 445 (550)
...++.|+|||+||.+|.-+|.+ ....+..+++..+
T Consensus 64 -~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 64 -PEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp -SSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred -CCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 22389999999999999988864 2333556666553
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.061 Score=51.18 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=35.3
Q ss_pred cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
..||++++.++..+.++. ...+..-..||||++.+|++-+.. ..|+++++
T Consensus 143 G~lyr~~p~g~~~~l~~~-~~~~~NGla~SpDg~tly~aDT~~----~~i~r~~~ 192 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDD-DLTIPNGLAFSPDGKTLYVADTPA----NRIHRYDL 192 (307)
T ss_pred ceEEEEcCCCCEEEeecC-cEEecCceEECCCCCEEEEEeCCC----CeEEEEec
Confidence 489999987666665554 344433345999999999986653 46788777
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.08 Score=51.66 Aligned_cols=185 Identities=11% Similarity=0.115 Sum_probs=87.3
Q ss_pred EEEEEECCC-CceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAG-GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++++++ ++.+.+..- ........+++||||+.++..... ...-.+|.++ ++|+.+.+.......
T Consensus 13 ~I~~~~~~~~g~l~~~~~~-------~~~~~~~~l~~spd~~~lyv~~~~-~~~i~~~~~~-~~g~l~~~~~~~~~~--- 80 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVV-------DVPGQVQPMVISPDKRHLYVGVRP-EFRVLSYRIA-DDGALTFAAESPLPG--- 80 (330)
T ss_pred CEEEEEECCCCceeeeeEE-------ecCCCCccEEECCCCCEEEEEECC-CCcEEEEEEC-CCCceEEeeeecCCC---
Confidence 356777753 554433221 111223446899999977655432 2222334444 355544333221110
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCC--Cceeecc--cccCeEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDIN--GTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~--~~~~~~l--T~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
.+. .+ ..++++ ++|.+... ...|.+++.+ +...+.+ ..+....... .++|+|+.+|+.....+
T Consensus 81 -~p~--~i----~~~~~g~~l~v~~~~-~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~-~~~p~g~~l~v~~~~~~--- 148 (330)
T PRK11028 81 -SPT--HI----STDHQGRFLFSASYN-ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSA-NIDPDNRTLWVPCLKED--- 148 (330)
T ss_pred -Cce--EE----EECCCCCEEEEEEcC-CCeEEEEEECCCCCCCCceeeccCCCcccEe-EeCCCCCEEEEeeCCCC---
Confidence 010 00 124444 66665432 2455555543 2111111 1121122233 38999998887665443
Q ss_pred eEEEEEEeCCCCCCCC--CCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 214 SHLYCAKLYPDWNHTL--EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~--~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.|+.+++...+.... .....+..+.+-..+.|+|||++++.+.... ..+.++++.
T Consensus 149 -~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~---~~v~v~~~~ 205 (330)
T PRK11028 149 -RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN---SSVDVWQLK 205 (330)
T ss_pred -EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC---CEEEEEEEe
Confidence 455556532232100 0111223334456678999999876554322 367776664
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.087 Score=49.44 Aligned_cols=176 Identities=16% Similarity=0.183 Sum_probs=92.8
Q ss_pred eeEEEEECCCCeEEEEEEec-CCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc-CC
Q 008873 89 YLARVNWMHGNILTAQVLNR-SQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK-TG 165 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r-~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-~g 165 (550)
..+.+.|+|+++.++.+... .+..-.-|.+|.+.|+...|-.....+- .+.+. +.+.++ ++|.++- .|
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~---~p~yv------svd~~g~~vf~AnY~~g 111 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS---PPCYV------SVDEDGRFVFVANYHSG 111 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC---CCeEE------EECCCCCEEEEEEccCc
Confidence 33457899999987766433 2344567888888898777655432210 00111 224444 7776653 44
Q ss_pred ccEEEEEeCCCceeecc------ccc-C------eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCC
Q 008873 166 FRHLYLHDINGTCLGPI------TEG-D------WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP 232 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~l------T~~-~------~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~ 232 (550)
.-.++-+..+|. +..+ +.+ . -++. ...++|+++.|+...-..+ +..+| ++. +|......+
T Consensus 112 ~v~v~p~~~dG~-l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D--ri~~y--~~~-dg~L~~~~~ 184 (346)
T COG2706 112 SVSVYPLQADGS-LQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD--RIFLY--DLD-DGKLTPADP 184 (346)
T ss_pred eEEEEEcccCCc-cccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc--eEEEE--Ecc-cCccccccc
Confidence 444455444432 1111 111 0 0122 2358899987776654433 24455 543 454333345
Q ss_pred eeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 233 VKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 233 ~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
..+..+.|--.+.|.|++++...+ ..-+.--.++-++...|+ ...|..
T Consensus 185 ~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~-~~~lQ~ 232 (346)
T COG2706 185 AEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGK-FEELQT 232 (346)
T ss_pred cccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCce-EEEeee
Confidence 555556666677999999865444 433332345555543344 444433
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0088 Score=56.82 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=76.8
Q ss_pred CeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC--CceEEEEEeecC
Q 008873 57 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT--GQRKVILVEELD 134 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~--g~~~~l~~~~~~ 134 (550)
+...||.+|..++..+.+. +.-..-..++|||||+.+++..... ..|+.++.+. |.... ..
T Consensus 141 ~~G~lyr~~p~g~~~~l~~---------~~~~~~NGla~SpDg~tly~aDT~~---~~i~r~~~d~~~g~~~~-----~~ 203 (307)
T COG3386 141 PTGSLYRVDPDGGVVRLLD---------DDLTIPNGLAFSPDGKTLYVADTPA---NRIHRYDLDPATGPIGG-----RR 203 (307)
T ss_pred CcceEEEEcCCCCEEEeec---------CcEEecCceEECCCCCEEEEEeCCC---CeEEEEecCcccCccCC-----cc
Confidence 3347999998655554431 1011234579999999887764332 3577776652 22100 00
Q ss_pred ceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCC----
Q 008873 135 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG---- 210 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~---- 210 (550)
.+.... .....+.....+.++.+|.+-..+-..|-+++++|.....+.-....+..+..-.++.+.||+++...+
T Consensus 204 ~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~~~~ 282 (307)
T COG3386 204 GFVDFD-EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGMSRM 282 (307)
T ss_pred eEEEcc-CCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCCCcc
Confidence 011100 000111111234455566433322246888888876655555442334445545678899999988652
Q ss_pred ----CceeEEEEEEe
Q 008873 211 ----PLESHLYCAKL 221 (550)
Q Consensus 211 ----~~~~~l~~v~~ 221 (550)
+..-.||.+.+
T Consensus 283 ~~~~~~~G~lf~~~~ 297 (307)
T COG3386 283 LTADPLGGGLFSLRL 297 (307)
T ss_pred ccccccCceEEEEec
Confidence 22234666665
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00044 Score=43.13 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=23.3
Q ss_pred CceeEEEEECCCCeEEEEEEecC-CCceEEEE
Q 008873 87 EEYLARVNWMHGNILTAQVLNRS-QTKLKVLK 117 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~-~~~~~l~~ 117 (550)
......|.|||||+.|+|++++. .+..+||+
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45677899999999999999887 34567774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.057 Score=50.20 Aligned_cols=166 Identities=13% Similarity=0.010 Sum_probs=87.5
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCc-
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF- 166 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~- 166 (550)
....++++|+||+.++++. .......||.....+.....+ .. .. .-.| +|++++.+|..++...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~-~~~~~~~L~~~~~~~~~~~~~-~g--~~------l~~P-----S~d~~g~~W~v~~~~~~ 88 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVS-EGDGGRSLYVGPAGGPVRPVL-TG--GS------LTRP-----SWDPDGWVWTVDDGSGG 88 (253)
T ss_pred ccccceEECCCCCeEEEEE-EcCCCCEEEEEcCCCcceeec-cC--Cc------cccc-----cccCCCCEEEEEcCCCc
Confidence 3677899999999998887 333445688887654433333 11 10 1112 5777777776655332
Q ss_pred cEEEEEeCCCc-eeecccccCe--EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCC-CCCCCCCeeeCCC--Cc
Q 008873 167 RHLYLHDINGT-CLGPITEGDW--MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW-NHTLEAPVKLTNG--KG 240 (550)
Q Consensus 167 ~~l~~~~~~~~-~~~~lT~~~~--~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g-~~~~~~~~~lt~~--~~ 240 (550)
..+++...++. ....+.-... .+..+. +|+||.++++.....+.....+..|.-..+| ......+.++... ..
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~-vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALR-VSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD 167 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEE-ECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence 23333222222 1222222111 456665 9999999999987655433444444432223 1112233344322 23
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
...+.|++++..++.. .....+... .+..
T Consensus 168 v~~v~W~~~~~L~V~~-~~~~~~~~~-~v~~ 196 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLG-RSAGGPVVR-LVSV 196 (253)
T ss_pred ceeeeecCCCEEEEEe-CCCCCceeE-EEEc
Confidence 5567899988655544 444443333 4444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00088 Score=61.24 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCc--EEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI--LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~--~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
+..++||+||..... .......++.....|+ .++.+.++..|.. ..+.... ........++...+..|.
T Consensus 17 ~~~vlvfVHGyn~~f------~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~~d~--~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 17 DKEVLVFVHGYNNSF------EDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYFYDR--ESARFSGPALARFLRDLA 87 (233)
T ss_pred CCeEEEEEeCCCCCH------HHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhhhhh--hhHHHHHHHHHHHHHHHH
Confidence 457999999954431 1111223444444444 7899998876542 1111111 011112445556666665
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhC----C-----CeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCC
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARF----P-----DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSS 475 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 475 (550)
+.. ...+|.|++||||+.+.+.++... . .+|..++..+|-.+...+....
T Consensus 88 ~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~~------------------- 146 (233)
T PF05990_consen 88 RAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQL------------------- 146 (233)
T ss_pred hcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHHH-------------------
Confidence 552 457999999999999998876541 1 2456666666654432211111
Q ss_pred hhhhhhcCCCcEEEEecCCCCCC
Q 008873 476 VMHHVHKMKGKLLLVHGMIDENV 498 (550)
Q Consensus 476 ~~~~~~~i~~P~lii~G~~D~~v 498 (550)
..+.+...++.+.+..+|...
T Consensus 147 --~~~~~~~~~itvy~s~~D~AL 167 (233)
T PF05990_consen 147 --PDLGSSARRITVYYSRNDRAL 167 (233)
T ss_pred --HHHhhcCCCEEEEEcCCchHH
Confidence 123334467788888887543
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0096 Score=52.83 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=63.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCC--cEEEEECCCCCCCCchhhHHHH
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKG--ILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G--~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
|..+....+.|--.... ...|+++++.|.|+...+... ++..|. ..+ ..++.+-.-|+-.-.....+..
T Consensus 10 gl~~si~~~~~~v~~~~-~~~~li~~IpGNPG~~gFY~~-------F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~ 81 (301)
T KOG3975|consen 10 GLPTSILTLKPWVTKSG-EDKPLIVWIPGNPGLLGFYTE-------FARHLHLNLIDRLPVWTISHAGHALMPASLREDH 81 (301)
T ss_pred CCcccceeeeeeeccCC-CCceEEEEecCCCCchhHHHH-------HHHHHHHhcccccceeEEeccccccCCccccccc
Confidence 33344444444332222 467999999999987553222 233332 222 4466666665543221111111
Q ss_pred hh-ccCCCchHHHHHH-HHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 385 KH-NCGRIDAEDQLTG-AEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 385 ~~-~~~~~~~~D~~~~-~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.. +-....++|++.- ++++.+. --...+|.|+|||-|+|+++.++-.
T Consensus 82 s~~~~eifsL~~QV~HKlaFik~~-~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 82 SHTNEEIFSLQDQVDHKLAFIKEY-VPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred ccccccccchhhHHHHHHHHHHHh-CCCCCEEEEEecchhHHHHHHHhhh
Confidence 11 1122345666554 4444443 2245789999999999999999874
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.011 Score=62.88 Aligned_cols=208 Identities=17% Similarity=0.137 Sum_probs=114.1
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD 82 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 82 (550)
+......+|+|+.++|+...-+... ...+..+|+.|..+ ...+
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~---------------------------~~~~~~~~~~d~~~--~~~~-------- 56 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLK---------------------------PLYKSSLWVSDGKT--VRLL-------- 56 (620)
T ss_pred cccCcccCCCCceeEEeeccccccc---------------------------cccccceEEEeccc--cccc--------
Confidence 3455667899999999876411100 01124577766665 2222
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe--ecCceeeccCccccCCCC-CccCCC----
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE--ELDSWVNLHDCFTPLDKG-VTKYSG---- 155 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~--~~~~~~~~~~~~~~~~~~-~~~~~~---- 155 (550)
........+.|||||+.+++..+......++|+++.+ | ....+.. ....|.+....+...... ..+..+
T Consensus 57 --~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g-~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 132 (620)
T COG1506 57 --TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G-LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHL 132 (620)
T ss_pred --ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C-ceeeeecccccceeCCCCCeEEEEecccccccCCceee
Confidence 2244567789999999999988565556789999988 4 1111111 222455444333321000 001111
Q ss_pred ---cE-EEEEccC-CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCC--CCceeEEEEEEeCCCCCCC
Q 008873 156 ---GF-IWASEKT-GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD--GPLESHLYCAKLYPDWNHT 228 (550)
Q Consensus 156 ---~~-~~~s~~~-g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~--~~~~~~l~~v~~~~~g~~~ 228 (550)
.+ ++...++ ...++|+++.++ ....++.++..+..+. ++.+++.++...... .+.....+.... .++
T Consensus 133 ~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 206 (620)
T COG1506 133 FVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFA-TDGDGRLVASIRLDDDADPWVTNLYVLIE-GNG--- 206 (620)
T ss_pred eecccceeecCCCCcccceEEEccCc-ccccccCCCCceeeee-eCCCCceeEEeeeccccCCceEeeEEEec-CCC---
Confidence 12 2233333 478999999876 5566666666655543 555566555555433 233333333322 122
Q ss_pred CCCCeeeCCCCc-eEEEEECCCCCEEEEeecC
Q 008873 229 LEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 229 ~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~ 259 (550)
.+..++...+ .....+.++|+.+.+....
T Consensus 207 --~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~ 236 (620)
T COG1506 207 --ELESLTPGEGSISKLAFDADGKSIALLGTE 236 (620)
T ss_pred --ceEEEcCCCceeeeeeeCCCCCeeEEeccC
Confidence 4566666544 4555788999977666543
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.005 Score=55.23 Aligned_cols=185 Identities=17% Similarity=0.078 Sum_probs=98.6
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCc
Q 008873 313 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 392 (550)
Q Consensus 313 ~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~ 392 (550)
.|+..|+. +. .||.+-||........ ..+..+.+.|+++||.|++.-|.-+= + +..+....
T Consensus 8 ~wvl~P~~------P~-gvihFiGGaf~ga~P~---itYr~lLe~La~~Gy~ViAtPy~~tf----D-H~~~A~~~---- 68 (250)
T PF07082_consen 8 SWVLIPPR------PK-GVIHFIGGAFVGAAPQ---ITYRYLLERLADRGYAVIATPYVVTF----D-HQAIAREV---- 68 (250)
T ss_pred cEEEeCCC------CC-EEEEEcCcceeccCcH---HHHHHHHHHHHhCCcEEEEEecCCCC----c-HHHHHHHH----
Confidence 36666753 23 4555556544332211 23555778899999999999986321 1 12222221
Q ss_pred hHHHHHHHHHHHHcCCCCCC--ceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc---------chhhhhcc
Q 008873 393 AEDQLTGAEWLIKQGLAKVG--HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---------TFYTEKYM 461 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~--~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~ 461 (550)
.+.+..+++.|.++..++.. ++.-+|||+|+-+-+.+...++..-++.++++ +-+..... ......+.
T Consensus 69 ~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~l~~EF~ 147 (250)
T PF07082_consen 69 WERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPALRLEFT 147 (250)
T ss_pred HHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccccccCcc
Confidence 34456677777766443433 67779999999999988876543323333322 11110000 00001111
Q ss_pred CCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC-CeEEEEcCCCCCc
Q 008873 462 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK-PYEILIFPDERHM 528 (550)
Q Consensus 462 g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~-~~~~~~~p~~~H~ 528 (550)
..|.+....... .-.....|+|.-.+|.. .++..+.+.|+.+.. .++....|| +|-
T Consensus 148 PsP~ET~~li~~-------~Y~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 148 PSPEETRRLIRE-------SYQVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred CCHHHHHHHHHH-------hcCCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 112221111110 00123567888888865 588888888877643 356667775 785
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.032 Score=57.72 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=36.2
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
.|.+||+.+++... .+. ....+.+++|+|||++++...... .|.+.|+.+++..
T Consensus 149 tIrIWDl~tg~~~~-~i~--------~~~~V~SlswspdG~lLat~s~D~----~IrIwD~Rsg~~i 202 (568)
T PTZ00420 149 FVNIWDIENEKRAF-QIN--------MPKKLSSLKWNIKGNLLSGTCVGK----HMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEECCCCcEEE-EEe--------cCCcEEEEEECCCCCEEEEEecCC----EEEEEECCCCcEE
Confidence 36789999876432 221 123578899999999887654322 3777888888753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.24 Score=51.42 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=58.0
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g 165 (550)
...+..++|+|++..++.....+. .|.+.|+.+++.......... +..+ .|++++ ++..+..++
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~Dg---tIrIWDl~tg~~~~~i~~~~~--------V~Sl----swspdG~lLat~s~D~ 189 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDS---FVNIWDIENEKRAFQINMPKK--------LSSL----KWNIKGNLLSGTCVGK 189 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCC---eEEEEECCCCcEEEEEecCCc--------EEEE----EECCCCCEEEEEecCC
Confidence 356788999999986544433322 366667777764322211111 0011 345555 444443333
Q ss_pred ccEEEEEeCCCceee-cccccCeEEEE----EEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 166 FRHLYLHDINGTCLG-PITEGDWMVEQ----IVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~-~lT~~~~~~~~----~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
.|.++|+.+++.. .+..+...+.. ...++++++.|+-++..+. ..+.|...++
T Consensus 190 --~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDl 247 (568)
T PTZ00420 190 --HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDL 247 (568)
T ss_pred --EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEEC
Confidence 5777787665432 23222211111 1224578777766655432 1244555565
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.14 Score=48.52 Aligned_cols=116 Identities=14% Similarity=0.236 Sum_probs=66.2
Q ss_pred CcEEEEEccCCccEEEEEeCCCcee------ecccc----cCeEEE--EEEeEeecCCEEEEEEcC------CCCceeEE
Q 008873 155 GGFIWASEKTGFRHLYLHDINGTCL------GPITE----GDWMVE--QIVGVNEASGQVYFTGTL------DGPLESHL 216 (550)
Q Consensus 155 ~~~~~~s~~~g~~~l~~~~~~~~~~------~~lT~----~~~~~~--~~~~~s~dg~~l~f~~~~------~~~~~~~l 216 (550)
+.++|.|-. ..+|..++.+... ..+|. ..|... +...+.+..++||+.... +. ....|
T Consensus 196 ~~~~F~Sy~---G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKd-pgteV 271 (342)
T PF06433_consen 196 GRLYFVSYE---GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKD-PGTEV 271 (342)
T ss_dssp TEEEEEBTT---SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS--EEEE
T ss_pred CeEEEEecC---CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccC-CceEE
Confidence 347777643 3678888766542 22332 245433 123467777889887652 22 24789
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
|.+|+. .+. .+.++.-.....++.+|.|.+=+++..+.. -..|+++|..+|+.++.+.
T Consensus 272 Wv~D~~-t~k----rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 272 WVYDLK-THK----RVARIPLEHPIDSIAVSQDDKPLLYALSAG--DGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEETT-TTE----EEEEEEEEEEESEEEEESSSS-EEEEEETT--TTEEEEEETTT--EEEEE-
T ss_pred EEEECC-CCe----EEEEEeCCCccceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCcEEeehh
Confidence 999983 222 455555332244667788887666655442 2489999999998776654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.18 Score=47.17 Aligned_cols=213 Identities=13% Similarity=0.039 Sum_probs=114.6
Q ss_pred CccceEEEcC-CCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCC
Q 008873 2 DRKTGYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGG 80 (550)
Q Consensus 2 ~~~~~~~wSP-dg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~ 80 (550)
+|-.++..+| ++.-+||.|... .-+.++|..+++..+.-..
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG-----------------------------------~~~~v~D~~~g~~~~~~~a--- 46 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPG-----------------------------------TFALVFDCRTGQLLQRLWA--- 46 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCC-----------------------------------cEEEEEEcCCCceeeEEcC---
Confidence 4667888999 666677776542 2367899999987653221
Q ss_pred CCCCCCCceeEEEEECCCCeEEEEEEecC-CCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EE
Q 008873 81 TDQNYDEEYLARVNWMHGNILTAQVLNRS-QTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FI 158 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspDg~~i~~~~~r~-~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (550)
.+...+.....|||||++++..-++. .....|-+.|+. ..-+++-+.+..+- +|. .- .+.+|+ .+
T Consensus 47 ---~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GI---GPH----el--~l~pDG~tL 113 (305)
T PF07433_consen 47 ---PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGI---GPH----EL--LLMPDGETL 113 (305)
T ss_pred ---CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCc---Chh----hE--EEcCCCCEE
Confidence 23445667889999999887765443 345678888887 34445444332221 111 00 123444 34
Q ss_pred EEEcc-------CC---------ccEEEEEeCCCce-eec--ccc--cCeEEEEEEeEeecCCEEEEEEcCCCC-ce-e-
Q 008873 159 WASEK-------TG---------FRHLYLHDINGTC-LGP--ITE--GDWMVEQIVGVNEASGQVYFTGTLDGP-LE-S- 214 (550)
Q Consensus 159 ~~s~~-------~g---------~~~l~~~~~~~~~-~~~--lT~--~~~~~~~~~~~s~dg~~l~f~~~~~~~-~~-~- 214 (550)
++.+. .| ...|-.+|..+|+ ..+ |.. ...++.- ..++.+|. ++|.....+. .. .
T Consensus 114 vVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH-La~~~~G~-V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 114 VVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH-LAVDGDGT-VAFAMQYQGDPGDAPP 191 (305)
T ss_pred EEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee-EEecCCCc-EEEEEecCCCCCccCC
Confidence 34321 12 2567777665554 334 322 2223333 34777774 4554443221 11 1
Q ss_pred EEEEEEeCCCCCCCCCCCeeeCCC-------Cc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLTNG-------KG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt~~-------~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
-|+.... +. ..+.+... .+ ..+++++.+|..++.++-.. ..+.+.|..+|+.+
T Consensus 192 Lva~~~~---g~----~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG---g~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 192 LVALHRR---GG----ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG---GRVAVWDAATGRLL 252 (305)
T ss_pred eEEEEcC---CC----cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC---CEEEEEECCCCCEe
Confidence 2222222 21 12222211 12 56778999998877664332 36677788888743
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.17 Score=49.81 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 128 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l 128 (550)
+-...+..+++||||++++.+.... .+|++|-++|+..--
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~ 227 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGE 227 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEE
Confidence 3345788899999999887775443 399999999986543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.014 Score=54.25 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=84.5
Q ss_pred EEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEE
Q 008873 92 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYL 171 (550)
Q Consensus 92 ~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~ 171 (550)
.|.|.+....++++.-.. .+|+.++.++++.+.+.... + .+ ... ..+++-+++++..+ +.+
T Consensus 4 gp~~d~~~g~l~~~D~~~---~~i~~~~~~~~~~~~~~~~~-~----~G--~~~------~~~~g~l~v~~~~~---~~~ 64 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG---GRIYRVDPDTGEVEVIDLPG-P----NG--MAF------DRPDGRLYVADSGG---IAV 64 (246)
T ss_dssp EEEEETTTTEEEEEETTT---TEEEEEETTTTEEEEEESSS-E----EE--EEE------ECTTSEEEEEETTC---EEE
T ss_pred ceEEECCCCEEEEEEcCC---CEEEEEECCCCeEEEEecCC-C----ce--EEE------EccCCEEEEEEcCc---eEE
Confidence 478998544454543222 36999999998766543221 1 00 000 11334555555544 345
Q ss_pred EeCCCceeeccccc-----C-eEEEEEEeEeecCCEEEEEEcCCCCc--e--eEEEEEEeCCCCCCCCCCCeeeCC-CCc
Q 008873 172 HDINGTCLGPITEG-----D-WMVEQIVGVNEASGQVYFTGTLDGPL--E--SHLYCAKLYPDWNHTLEAPVKLTN-GKG 240 (550)
Q Consensus 172 ~~~~~~~~~~lT~~-----~-~~~~~~~~~s~dg~~l~f~~~~~~~~--~--~~l~~v~~~~~g~~~~~~~~~lt~-~~~ 240 (550)
+|.++++.+.+... . ....+. .++++|+ |||+....... . -.||+++. ++ +.+.+.. ...
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~-~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~--~~-----~~~~~~~~~~~ 135 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDV-AVDPDGN-LYVTDSGGGGASGIDPGSVYRIDP--DG-----KVTVVADGLGF 135 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEE-EE-TTS--EEEEEECCBCTTCGGSEEEEEEET--TS-----EEEEEEEEESS
T ss_pred EecCCCcEEEEeeccCCCcccCCCceE-EEcCCCC-EEEEecCCCccccccccceEEECC--CC-----eEEEEecCccc
Confidence 58878776665542 2 223344 4889986 99887643211 1 57999997 43 2233322 123
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
-..+.||||++.|+++-+.. ..|+++++.
T Consensus 136 pNGi~~s~dg~~lyv~ds~~---~~i~~~~~~ 164 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFN---GRIWRFDLD 164 (246)
T ss_dssp EEEEEEETTSSEEEEEETTT---TEEEEEEEE
T ss_pred ccceEECCcchheeeccccc---ceeEEEecc
Confidence 45678999999886654432 368888875
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.015 Score=61.72 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=54.1
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc-CC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-TG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~g 165 (550)
+..+..+.||||+++++...... .|.+.+..+.+...+++.... . ..+..|+|-+=++.+.. +.
T Consensus 129 ~~DV~Dv~Wsp~~~~lvS~s~Dn----sViiwn~~tF~~~~vl~~H~s----------~-VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDSLLVSVSLDN----SVIIWNAKTFELLKVLRGHQS----------L-VKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred CCccceeccCCCccEEEEecccc----eEEEEccccceeeeeeecccc----------c-ccceEECCccCeeeeecCCc
Confidence 44567789999999888775443 367777777754433332110 0 11114555442223222 22
Q ss_pred ccEEEEEeCCCceeecccccC------eEEEEEEeEeecCCEEEEEEc
Q 008873 166 FRHLYLHDINGTCLGPITEGD------WMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~------~~~~~~~~~s~dg~~l~f~~~ 207 (550)
---+|... +-+..+.+|... -.... .+|||||++|.-.-.
T Consensus 194 tikvwrt~-dw~i~k~It~pf~~~~~~T~f~R-lSWSPDG~~las~nA 239 (942)
T KOG0973|consen 194 TLKVWRTS-DWGIEKSITKPFEESPLTTFFLR-LSWSPDGHHLASPNA 239 (942)
T ss_pred eEEEEEcc-cceeeEeeccchhhCCCcceeee-cccCCCcCeecchhh
Confidence 22344422 233444555421 11223 469999998875543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.052 Score=53.64 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=101.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEE-EcccCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM-DLQCGGTD 82 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~ 82 (550)
-+.|.|||-+.-|||-.--.... -+++-++.+-+++..+. ++
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~-------------------------------parvtL~evPs~~~iRt~nl------ 391 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNI-------------------------------PARVTLMEVPSKREIRTKNL------ 391 (698)
T ss_pred ccCcccCCCcceEEEEcccccCC-------------------------------cceEEEEecCccceeeeccc------
Confidence 46789999999999975332221 12344455554433211 11
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCC--------ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQT--------KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~--------~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
.....+..-|-..|++|.+-..|-.. +.+|+.|.-+.=-...+ +.. .+.+.+ +|.|
T Consensus 392 ---fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elk-------e~vi~F-----aWEP 455 (698)
T KOG2314|consen 392 ---FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELK-------ESVIAF-----AWEP 455 (698)
T ss_pred ---eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecc-------hheeee-----eecc
Confidence 12334556899999988776655431 23555554332111111 111 112223 2444
Q ss_pred --CcEEEEEccCC--ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCC
Q 008873 155 --GGFIWASEKTG--FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230 (550)
Q Consensus 155 --~~~~~~s~~~g--~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~ 230 (550)
++|..++-..- .-..|.+....++++.+..-+-..-.-..|||.|+.++..+-... ...|+.+|.....-
T Consensus 456 ~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~--~g~l~F~D~~~a~~---- 529 (698)
T KOG2314|consen 456 HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSR--RGDLEFYDTDYADL---- 529 (698)
T ss_pred CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEeccc--ccceEEEecchhhh----
Confidence 45776664322 345677766566555444322222223469999998887766432 24566666521010
Q ss_pred CCeeeCCCCceEEEEECCCCCEEEEeecCC
Q 008873 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSL 260 (550)
Q Consensus 231 ~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~ 260 (550)
+......-.+.....|.|.|+|++-..+..
T Consensus 530 k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 530 KDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhccCccccccccceECCCCCEEEEeeehh
Confidence 111111112345567999999987655443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.027 Score=54.95 Aligned_cols=119 Identities=12% Similarity=0.116 Sum_probs=58.6
Q ss_pred EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCC---CCCCE
Q 008873 189 VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSL---DSPPR 265 (550)
Q Consensus 189 ~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~---~~p~~ 265 (550)
+..+ .+|+||+.|+-.+.++. ..||-+.- -+.++....-|...--...+.||||.+ |+++.++. ..++.
T Consensus 367 Itsi-~FS~dg~~LlSRg~D~t---LKvWDLrq---~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 367 ITSI-SFSYDGNYLLSRGFDDT---LKVWDLRQ---FKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGT 438 (641)
T ss_pred eeEE-EeccccchhhhccCCCc---eeeeeccc---cccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCce
Confidence 3444 49999998876655543 56663321 111111111122111245678999986 45555543 34567
Q ss_pred EEEEEcCCCceeEeccCCCCChhhhhcCCC-CCCeEEEEEcCCCcEEEEEEEcCCC
Q 008873 266 ILLCSLQDGSLVLPLYEQPLTVPRIKRLQL-EPPDIVQIQANDGTVLYGALYKPDE 320 (550)
Q Consensus 266 l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~P~~ 320 (550)
|+.++..+-.....+.-. ........| ++..++...+.||. + ..+|-|..
T Consensus 439 L~f~d~~t~d~v~ki~i~---~aSvv~~~WhpkLNQi~~gsgdG~-~-~vyYdp~~ 489 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDIS---TASVVRCLWHPKLNQIFAGSGDGT-A-HVYYDPNE 489 (641)
T ss_pred EEEEeccceeeEEEecCC---CceEEEEeecchhhheeeecCCCc-e-EEEECccc
Confidence 888886554433333211 112222222 23355666666764 2 23345543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.016 Score=53.01 Aligned_cols=50 Identities=16% Similarity=0.374 Sum_probs=38.1
Q ss_pred cEEEEEeCCCceeecccccCeEEEEE--EeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQI--VGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~--~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
..+|+++..|.-.+-.++|+.+-.++ ...||.|.++|..+.+ .-+|.++.
T Consensus 415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED-----~vlYCF~~ 466 (508)
T KOG0275|consen 415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED-----GVLYCFSV 466 (508)
T ss_pred CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC-----cEEEEEEe
Confidence 46999999888888888886543332 2589999999988664 46888876
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.17 Score=52.02 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=33.1
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS 109 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~ 109 (550)
+|.++|+...+...+.++ ..+.+..++.||||.+++.+..|+
T Consensus 36 rvsv~dLknN~S~Tl~~e--------~~~NI~~ialSp~g~lllavdE~g 77 (893)
T KOG0291|consen 36 RVSVFDLKNNKSYTLPLE--------TRYNITRIALSPDGTLLLAVDERG 77 (893)
T ss_pred EEEEEEccCCcceeEEee--------cCCceEEEEeCCCceEEEEEcCCC
Confidence 578999999888877653 356789999999999887775554
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00092 Score=41.67 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=24.9
Q ss_pred ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 180 ~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
++||........+ .|||||++|+|++++.+.+..+||+
T Consensus 2 ~~~t~~~~~~~~p-~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSP-AWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEE-EE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCE-EEecCCCEEEEEecCCCCCCcCEEC
Confidence 5667665544445 4999999999999987334577874
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.023 Score=58.25 Aligned_cols=165 Identities=19% Similarity=0.134 Sum_probs=94.8
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceeeccCccccCCCCCccCCCcEEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 163 (550)
.-.+.+...++|||.++|+.++... ..+||.++..+ +..+... ..+.|.- ..+|.|++|+|-.
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~--svRLWsl~t~s--~~V~y~GH~~PVwdV------------~F~P~GyYFatas 512 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDS--SVRLWSLDTWS--CLVIYKGHLAPVWDV------------QFAPRGYYFATAS 512 (707)
T ss_pred cCCCceeeeeecccccceeeccCCc--ceeeeecccce--eEEEecCCCcceeeE------------EecCCceEEEecC
Confidence 3345677889999999888776543 23588876543 3344331 2334521 2346678887653
Q ss_pred -CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-e
Q 008873 164 -TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-K 241 (550)
Q Consensus 164 -~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~ 241 (550)
++-.+||..|- .++.++=.|.....+...+.|...+++ ++..+. ..++|-+.. |. .++..+...+ .
T Consensus 513 ~D~tArLWs~d~--~~PlRifaghlsDV~cv~FHPNs~Y~a-TGSsD~--tVRlWDv~~---G~----~VRiF~GH~~~V 580 (707)
T KOG0263|consen 513 HDQTARLWSTDH--NKPLRIFAGHLSDVDCVSFHPNSNYVA-TGSSDR--TVRLWDVST---GN----SVRIFTGHKGPV 580 (707)
T ss_pred CCceeeeeeccc--CCchhhhcccccccceEEECCcccccc-cCCCCc--eEEEEEcCC---Cc----EEEEecCCCCce
Confidence 44568888874 223333333322223335888876544 433332 366664443 32 3444443333 6
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.++.+||+|++|+-- .....|-+.|+.+|+.+..+.
T Consensus 581 ~al~~Sp~Gr~LaSg----~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 581 TALAFSPCGRYLASG----DEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred EEEEEcCCCceEeec----ccCCcEEEEEcCCCcchhhhh
Confidence 677999999988533 333578888888877554443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.092 Score=48.29 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=47.8
Q ss_pred cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC----CceE
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG----KGKH 242 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~----~~~~ 242 (550)
..|.++++.|....-+......... ..+||+|+.|+..+-.-+ ..+|.+-...+|..+ ++.++..- .+.+
T Consensus 209 t~i~lw~lkGq~L~~idtnq~~n~~-aavSP~GRFia~~gFTpD---VkVwE~~f~kdG~fq--ev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSIDTNQSSNYD-AAVSPDGRFIAVSGFTPD---VKVWEPIFTKDGTFQ--EVKRVFSLKGHQSAVL 282 (420)
T ss_pred CcEEEEecCCceeeeeccccccccc-eeeCCCCcEEEEecCCCC---ceEEEEEeccCcchh--hhhhhheeccchhhee
Confidence 4677777776433333222211122 358999998887665433 567766553345321 23333222 2367
Q ss_pred EEEECCCCCEEEEee
Q 008873 243 VAVLDHNMRNFVDFH 257 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~ 257 (550)
.+.||++.+.++-+.
T Consensus 283 ~~aFsn~S~r~vtvS 297 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVS 297 (420)
T ss_pred eeeeCCCcceeEEEe
Confidence 778999988876553
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0011 Score=64.27 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=79.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCchh---hHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLK---FEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~~~---~~~~~~~ 386 (550)
+...+|.|... + .+..|+|+++||+.... ..... -+ -.+.|+ ..+.+||.++||-. -.|-- ......+
T Consensus 121 LYlNVW~P~~~-p--~n~tVlVWiyGGGF~sG-t~SLd-vY--dGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 121 LYLNVWAPAAD-P--YNLTVLVWIYGGGFYSG-TPSLD-VY--DGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPG 192 (601)
T ss_pred eEEEEeccCCC-C--CCceEEEEEEcCccccC-Cccee-ee--ccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCC
Confidence 66677888421 1 34459999999754322 11111 11 135565 45789999999942 12211 1223334
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcC
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVT 447 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~ 447 (550)
++| +-|+.-|++|+.+. -.-|++||.++|.|+|+..+..-+.. | .+|+-+|+.+|..
T Consensus 193 NmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~ 255 (601)
T KOG4389|consen 193 NMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSL 255 (601)
T ss_pred ccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCC
Confidence 444 88999999999886 33589999999999999877554442 3 3677788777654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.15 Score=47.42 Aligned_cols=173 Identities=12% Similarity=0.000 Sum_probs=77.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEc-ccCC--
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDL-QCGG-- 80 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~-~~~~-- 80 (550)
.....+||||+.+||+...+.....+... .++..........+.-|.-. +...+|.++......+.+.. ..+.
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~-~~~~~~~~~~g~~l~~PS~d---~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGP-AGGPVRPVLTGGSLTRPSWD---PDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEc-CCCcceeeccCCcccccccc---CCCCEEEEEcCCCceEEEEecCCCcce
Confidence 46788999999999998434333333332 22211000001111111111 11335555443333322210 0010
Q ss_pred C---CCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC---CCceEEEEEeecCceeeccCccccCCCCCccCC
Q 008873 81 T---DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK---TGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 81 ~---~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~---~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
. ........+..+++||||++++++..+... .+|++.-+. .|..+.|.....-.- .. .... ....|.+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~-~~v~va~V~r~~~g~~~~l~~~~~~~~-~~---~~~v-~~v~W~~ 175 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGG-GRVYVAGVVRDGDGVPRRLTGPRRVAP-PL---LSDV-TDVAWSD 175 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCC-CeEEEEEEEeCCCCCcceeccceEecc-cc---cCcc-eeeeecC
Confidence 0 001111168899999999999988766543 446555332 332333332110000 00 0000 0014555
Q ss_pred Cc-EEEEEccCCccEEEEEeCCCceeecccccC
Q 008873 155 GG-FIWASEKTGFRHLYLHDINGTCLGPITEGD 186 (550)
Q Consensus 155 ~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~ 186 (550)
+. +++.....+-.....+..+|+..++|+..+
T Consensus 176 ~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~ 208 (253)
T PF10647_consen 176 DSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVN 208 (253)
T ss_pred CCEEEEEeCCCCCceeEEEEccCCcccccCCCC
Confidence 54 666655544322224666787777775544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.099 Score=46.79 Aligned_cols=73 Identities=10% Similarity=-0.002 Sum_probs=49.9
Q ss_pred eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeec
Q 008873 179 LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHD 258 (550)
Q Consensus 179 ~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s 258 (550)
.|-+|+-+|.+..+. +|.||+.|+-. +++. ...|..+. +|. +.-++....-..+++|-|.--.|+|.++
T Consensus 224 ~R~isRldwpVRTlS-FS~dg~~lASa-SEDh--~IDIA~ve---tGd----~~~eI~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLS-FSHDGRMLASA-SEDH--FIDIAEVE---TGD----RVWEIPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred heeeccccCceEEEE-eccCcceeecc-Cccc--eEEeEecc---cCC----eEEEeeccCCceeEEecCCCceeeEEec
Confidence 577888899988765 99999876633 3332 24444333 344 4556666555788899999888888887
Q ss_pred CCCC
Q 008873 259 SLDS 262 (550)
Q Consensus 259 ~~~~ 262 (550)
..+.
T Consensus 293 dk~~ 296 (313)
T KOG1407|consen 293 DKDG 296 (313)
T ss_pred CCCC
Confidence 6544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.13 Score=49.87 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=60.8
Q ss_pred EEEEECC-CCeEEEEEEecCCCceEEEEEECCCCceEEEE-----Eee--cCceeeccCccccCCCCCccCCC-cEEEE-
Q 008873 91 ARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-----VEE--LDSWVNLHDCFTPLDKGVTKYSG-GFIWA- 160 (550)
Q Consensus 91 ~~~~wsp-Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 160 (550)
..|.+++ ||+.++.... ..|+.+|+.+.+...+. ... .++|.+.+.. +. ..+++ +.+|+
T Consensus 197 ~rP~~~~~dg~~~~vs~e-----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q--~i----a~~~dg~~lyV~ 265 (352)
T TIGR02658 197 NHPAYSNKSGRLVWPTYT-----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ--QV----AYHRARDRIYLL 265 (352)
T ss_pred cCCceEcCCCcEEEEecC-----CeEEEEecCCCcceecceeeeccccccccccCCCcce--eE----EEcCCCCEEEEE
Confidence 3445566 8876655433 35999997665443221 111 2245543311 11 12333 34554
Q ss_pred Ecc-------CCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 161 SEK-------TGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 161 s~~-------~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
... .+-.+|+++|..+++. ++|.-|. ....+. +|+||+.++|..+... ..|..+|.
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~ia-vS~Dgkp~lyvtn~~s---~~VsViD~ 329 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSIN-VSQDAKPLLYALSTGD---KTLYIFDA 329 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEE-ECCCCCeEEEEeCCCC---CcEEEEEC
Confidence 322 1236999999887664 3444454 233443 8999994555555432 24666776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0035 Score=56.62 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC----CCeeEEEEEcCC
Q 008873 370 NRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAP 445 (550)
Q Consensus 370 ~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~~~~~~~v~~~~ 445 (550)
+||+..+...|.+.....+. ....-+..|++|+.+.-.-.+.+|.+.|||.||.+|.+++..- .+++..+++..+
T Consensus 43 FRGTd~t~~~W~ed~~~~~~-~~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 43 FRGTDDTLVDWKEDFNMSFQ-DETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred EECCCCchhhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 45554444445544433322 1244456777777654211234699999999999999999863 346777777665
Q ss_pred c
Q 008873 446 V 446 (550)
Q Consensus 446 ~ 446 (550)
.
T Consensus 122 P 122 (224)
T PF11187_consen 122 P 122 (224)
T ss_pred C
Confidence 3
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.18 Score=46.52 Aligned_cols=223 Identities=12% Similarity=0.063 Sum_probs=106.1
Q ss_pred CccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCC-------------CCCcccccCCCCCCC------CCeEEEE
Q 008873 2 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVG-------------SEAQEDHAYPFAGAS------NVKVRLG 62 (550)
Q Consensus 2 ~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~y~~~g~~------~~~~~l~ 62 (550)
|....+.|+||-+.+++...+..+.-.|-+....+..+. .+....+.|-.+|+. .....|.
T Consensus 133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKIC 212 (420)
T ss_pred CCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEE
Confidence 445678999999999987765443322222221111000 011111222222221 1224678
Q ss_pred EEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEE-ECCCCce---EEEEEeecCceee
Q 008873 63 VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF-DIKTGQR---KVILVEELDSWVN 138 (550)
Q Consensus 63 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~-~~~~g~~---~~l~~~~~~~~~~ 138 (550)
+|++++.-...++.. .......+.||||++|+...--. +. .+|.+ =.+.|+. .++....+..-
T Consensus 213 lw~lkGq~L~~idtn---------q~~n~~aavSP~GRFia~~gFTp-DV-kVwE~~f~kdG~fqev~rvf~LkGH~s-- 279 (420)
T KOG2096|consen 213 LWDLKGQLLQSIDTN---------QSSNYDAAVSPDGRFIAVSGFTP-DV-KVWEPIFTKDGTFQEVKRVFSLKGHQS-- 279 (420)
T ss_pred EEecCCceeeeeccc---------cccccceeeCCCCcEEEEecCCC-Cc-eEEEEEeccCcchhhhhhhheeccchh--
Confidence 889986555545332 23345678999999887552211 11 23332 2233433 33333322200
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCC---Cceeeccccc--------CeEEEEEEeEeecCCEEEEEEc
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN---GTCLGPITEG--------DWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~---~~~~~~lT~~--------~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
....+.|.+ +...++-+| ++|-+.||-.|.. +...+.|-.| .-.+ . ...+|.|+.|+.+.-
T Consensus 280 aV~~~aFsn-----~S~r~vtvS-kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-R-L~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 280 AVLAAAFSN-----SSTRAVTVS-KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-R-LELSPSGDSLAVSFG 351 (420)
T ss_pred heeeeeeCC-----CcceeEEEe-cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-E-EEeCCCCcEEEeecC
Confidence 000122211 223355444 5677777766632 2222333222 1112 2 348899988876643
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeC--CCCceEEEEECCCCCEEEEe
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLT--NGKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt--~~~~~~~~~~s~dg~~l~~~ 256 (550)
. ..++|... +|+ ...++. .+..+.+++|++||++++-.
T Consensus 352 s----~l~~~~se---~g~----~~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 352 S----DLKVFASE---DGK----DYPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred C----ceEEEEcc---cCc----cchhHHHhhcCceeeEEecCCCcEEeee
Confidence 2 25666433 343 111221 12346777999999987644
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.52 Score=44.85 Aligned_cols=197 Identities=13% Similarity=0.086 Sum_probs=97.5
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
-|-+||.+|-+.. .+.+..++..+. -.+....+.|.|||++++..--. .+-|-++|++.++... +-.-+++..
T Consensus 68 vv~~~D~~TL~~~~EI~iP~k~R~~~--~~~~~~~~ls~dgk~~~V~N~TP--a~SVtVVDl~~~kvv~--ei~~PGC~~ 141 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGEIEIPPKPRAQV--VPYKNMFALSADGKFLYVQNFTP--ATSVTVVDLAAKKVVG--EIDTPGCWL 141 (342)
T ss_dssp EEEEEETTTTEEEEEEEETTS-B--B--S--GGGEEE-TTSSEEEEEEESS--SEEEEEEETTTTEEEE--EEEGTSEEE
T ss_pred EEEEEecCcCcccceEecCCcchhee--cccccceEEccCCcEEEEEccCC--CCeEEEEECCCCceee--eecCCCEEE
Confidence 4678999987554 444432211111 11223358899999776653222 3458999999987643 333343332
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeeccccc-----CeEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-----DWMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~-----~~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
.. | +.+++|.-. ..+|--.-+.+|.+|+..+.-|.- +.-...+ .++.++.++||.+-.
T Consensus 142 iy----P------~~~~~F~~l-C~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~-~~~~~~~~~~F~Sy~----- 204 (342)
T PF06433_consen 142 IY----P------SGNRGFSML-CGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP-AYSRDGGRLYFVSYE----- 204 (342)
T ss_dssp EE----E------EETTEEEEE-ETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S---EEETTTTEEEEEBTT-----
T ss_pred EE----e------cCCCceEEE-ecCCceEEEEECCCCCEeEeeccccCCCCccccccc-ceECCCCeEEEEecC-----
Confidence 21 1 123444422 334544445566666554333321 1111122 255567788887654
Q ss_pred eEEEEEEeCCCCCCC-CCCCee-eCCC--------CceEEEEECCCCCEEEEeecCC-----CCC-CEEEEEEcCCCcee
Q 008873 214 SHLYCAKLYPDWNHT-LEAPVK-LTNG--------KGKHVAVLDHNMRNFVDFHDSL-----DSP-PRILLCSLQDGSLV 277 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~-~~~~~~-lt~~--------~~~~~~~~s~dg~~l~~~~s~~-----~~p-~~l~~~~~~~g~~~ 277 (550)
-.||.+++ .+... ...+-. ++.. .|+..+++.+..+.|+..+... ..| .++|++|+++++.+
T Consensus 205 G~v~~~dl--sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv 282 (342)
T PF06433_consen 205 GNVYSADL--SGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV 282 (342)
T ss_dssp SEEEEEEE--TTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE
T ss_pred CEEEEEec--cCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE
Confidence 37888888 33310 001111 1110 2345566765554554444322 112 57999999999877
Q ss_pred Eecc
Q 008873 278 LPLY 281 (550)
Q Consensus 278 ~~l~ 281 (550)
+++.
T Consensus 283 ~Ri~ 286 (342)
T PF06433_consen 283 ARIP 286 (342)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0044 Score=59.08 Aligned_cols=91 Identities=21% Similarity=0.261 Sum_probs=65.2
Q ss_pred HhHHHHhCCcEEEEECCCCCCCC---chh-hHHHHhhccC----CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHH
Q 008873 354 RAQYLRSKGILVWKLDNRGTARR---GLK-FEASIKHNCG----RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYL 425 (550)
Q Consensus 354 ~~~~l~~~G~~vv~~d~rG~g~~---~~~-~~~~~~~~~~----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~ 425 (550)
+.....+.+-.+|.+.+|-.|.+ |.. +.. ...++ +..+.|....+..|+.........|+++|.||||++
T Consensus 103 m~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~--~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGML 180 (492)
T KOG2183|consen 103 MWDLAPELKALLVFAEHRYYGESLPFGSQSYKD--ARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGML 180 (492)
T ss_pred HHhhhHhhCceEEEeehhccccCCCCcchhccC--hhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHH
Confidence 34455578899999999977754 222 111 11222 235778888888888775556678999999999999
Q ss_pred HHHHHhhCCCeeEEEEE-cCCc
Q 008873 426 SAITLARFPDVFQCAVS-GAPV 446 (550)
Q Consensus 426 a~~~~~~~~~~~~~~v~-~~~~ 446 (550)
++|.-.++|.++.++++ .+|+
T Consensus 181 aAWfRlKYPHiv~GAlAaSAPv 202 (492)
T KOG2183|consen 181 AAWFRLKYPHIVLGALAASAPV 202 (492)
T ss_pred HHHHHhcChhhhhhhhhccCce
Confidence 99999999998777665 4555
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.18 Score=51.72 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=36.9
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 125 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~ 125 (550)
.|.+||+++++.... + ......+..++|+|||+.++...... .|.+.|+.+++.
T Consensus 149 tVrIWDl~tg~~~~~-l-------~~h~~~V~sla~spdG~lLatgs~Dg----~IrIwD~rsg~~ 202 (493)
T PTZ00421 149 VVNVWDVERGKAVEV-I-------KCHSDQITSLEWNLDGSLLCTTSKDK----KLNIIDPRDGTI 202 (493)
T ss_pred EEEEEECCCCeEEEE-E-------cCCCCceEEEEEECCCCEEEEecCCC----EEEEEECCCCcE
Confidence 478899998865432 2 12234578899999999887665332 377778888774
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0061 Score=61.06 Aligned_cols=62 Identities=16% Similarity=0.047 Sum_probs=49.1
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcC--------------------CC-eEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAAR--------------------KP-YEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~--------------------~~-~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
.++||..|..|.+|+....+.+.++|.-.+ .+ ..++++-++||... ...+..++.+.
T Consensus 348 irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp--~qP~~al~m~~ 425 (433)
T PLN03016 348 YRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFIMFQ 425 (433)
T ss_pred ceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC--CCHHHHHHHHH
Confidence 589999999999999999999998885211 22 67778889999983 46777888888
Q ss_pred HHHHH
Q 008873 544 EFIER 548 (550)
Q Consensus 544 ~fl~~ 548 (550)
+|+..
T Consensus 426 ~Fi~~ 430 (433)
T PLN03016 426 RWISG 430 (433)
T ss_pred HHHcC
Confidence 88753
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0029 Score=58.08 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHH-HHHHHHcC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQG 407 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~ 407 (550)
|.|+++|+..+... .|..++..|... ..|+..+.+|.+.-...+ .+++|+.+. ++.+.+..
T Consensus 1 ~pLF~fhp~~G~~~-------~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~~----------~~l~~~a~~yv~~Ir~~Q 62 (257)
T COG3319 1 PPLFCFHPAGGSVL-------AYAPLAAALGPL-LPVYGLQAPGYGAGEQPF----------ASLDDMAAAYVAAIRRVQ 62 (257)
T ss_pred CCEEEEcCCCCcHH-------HHHHHHHHhccC-ceeeccccCccccccccc----------CCHHHHHHHHHHHHHHhC
Confidence 46788999766532 233344555555 899999999876422211 123444333 22333321
Q ss_pred CCCCCceEEEEechhHHHHHHHHhh---CCCeeEEEEEcCCcCC
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAPVTS 448 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~---~~~~~~~~v~~~~~~~ 448 (550)
....+.+.|||+||.++.-+|.+ ..+-++-+++...+..
T Consensus 63 --P~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 63 --PEGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred --CCCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 23579999999999999988865 2345566666555444
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0049 Score=48.22 Aligned_cols=59 Identities=8% Similarity=0.126 Sum_probs=47.6
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
..|+|++.++.|..+|.+.+..+.+.|. ..+++..++.+|+... ....=..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~----~s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLP----GSRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCC----CceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 4799999999999999999999998872 3689999999999753 223345677778875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0072 Score=57.56 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=89.1
Q ss_pred hHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 353 MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 353 ~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.....|+++|+.||-+|---.-.+.+.. .....|+.+.+++...+- ...++.++|+|+|+=+.-.+-.+
T Consensus 278 ~v~~~l~~~gvpVvGvdsLRYfW~~rtP---------e~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~~n~ 346 (456)
T COG3946 278 EVAEALQKQGVPVVGVDSLRYFWSERTP---------EQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFAYNR 346 (456)
T ss_pred HHHHHHHHCCCceeeeehhhhhhccCCH---------HHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHHHHh
Confidence 3578899999999999954222222211 122678888888887764 45799999999999876555544
Q ss_pred CCCeeEEEEEcCCcCCcc---cccchhhhhccCCCCCCccccccCChhhhhhcCC-CcEEEEecCCC--CCCChHHHHHH
Q 008873 433 FPDVFQCAVSGAPVTSWD---GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMID--ENVHFRHTARL 506 (550)
Q Consensus 433 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D--~~v~~~~~~~~ 506 (550)
-|...+..|......... .|. +-.+.++|...+. .......+.++. ..+..|+|.+| +.||-
T Consensus 347 L~~~~r~~v~~~~ll~l~~~~~fe-~~v~gWlg~~~~g-----~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp~------ 414 (456)
T COG3946 347 LPPATRQRVRMVSLLGLGRTADFE-ISVEGWLGMAGEG-----AGDVVPDIAKLPLARVQCIYGQEEKDTACPS------ 414 (456)
T ss_pred CCHHHHHHHHHHHHHhccccceEE-EEEeeeeccCCcC-----CCCcchhhhhCCcceeEEEecCccccccCCc------
Confidence 443222211111111000 011 1112233322221 123455666665 47788998654 55542
Q ss_pred HHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 507 INALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 507 ~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
|+. +.++.+..||+ |.| .++...+.+.|++=+
T Consensus 415 ---l~~--~~~~~v~lpGg-HHF--d~dy~~la~~il~~~ 446 (456)
T COG3946 415 ---LKA--KGVDTVKLPGG-HHF--DGDYEKLAKAILQGM 446 (456)
T ss_pred ---chh--hcceeEecCCC-ccc--CccHHHHHHHHHHHH
Confidence 222 23566778885 545 234555566666543
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0066 Score=57.04 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=77.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhC---C------cEEEEECCCCCCCCc
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK---G------ILVWKLDNRGTARRG 377 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~---G------~~vv~~d~rG~g~~~ 377 (550)
.|..|+.....|+..+...+.+|+++ +||-|++.. +.+ -+...|..- | +.|++|..+|.|.|.
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl-~HGwPGsv~--EFy-----kfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd 203 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLL-LHGWPGSVR--EFY-----KFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSD 203 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEE-ecCCCchHH--HHH-----hhhhhhcCccccCCccceeEEEeccCCCCcccCc
Confidence 68889999888876544445567655 799999843 222 124445432 3 789999999998775
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEE
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 442 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~ 442 (550)
..-... + ....+...++-|.-+ +.-++..|-|.-+|..++..++..+|+.+.+.=+
T Consensus 204 ~~sk~G----F---n~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHl 259 (469)
T KOG2565|consen 204 APSKTG----F---NAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHL 259 (469)
T ss_pred CCccCC----c---cHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhh
Confidence 432211 1 122333444444322 2347899999999999999999999987666433
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0083 Score=58.86 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=79.0
Q ss_pred CceEEEEEcC-CCCceeecccccccc-hhHhHHHHhCCcEEEEECCCCCCCCc---hhhHHHHhhccCCCchHHHHHHHH
Q 008873 327 PYKTLISVYG-GPCVQLVCDSWINTV-DMRAQYLRSKGILVWKLDNRGTARRG---LKFEASIKHNCGRIDAEDQLTGAE 401 (550)
Q Consensus 327 ~~P~vv~~hG-g~~~~~~~~~~~~~~-~~~~~~l~~~G~~vv~~d~rG~g~~~---~~~~~~~~~~~~~~~~~D~~~~~~ 401 (550)
.-|+.+++-| ||.. +.|.... ..+.++..+.|-.|+...+|=.|.+- ..-...+..--....+.|+...|+
T Consensus 85 ~gPiFLmIGGEgp~~----~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~ 160 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPES----DKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIK 160 (514)
T ss_pred CCceEEEEcCCCCCC----CCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHH
Confidence 3488888755 3332 3452222 23456667899999999999777431 111111111111234788899988
Q ss_pred HHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 402 WLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 402 ~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
.+..+ +.-+..+.+.+|.||-|.+++|+-..+|+++.++|+.+++.
T Consensus 161 ~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 161 AMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred HHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 88877 34566699999999999999999999999998888876543
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.02 Score=57.05 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=84.7
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccchh--HhHHHH------hCCcEEEE
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTVDM--RAQYLR------SKGILVWK 367 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~~--~~~~l~------~~G~~vv~ 367 (550)
-.+.+....+..+.+|++..... ++..|+||++-|||+...+...+ +| +.. ....|. .+--.++.
T Consensus 47 GYv~v~~~~~~~LFYwf~eS~~~---P~~dPlvLWLnGGPGCSSl~G~~~E~GP-f~v~~~G~tL~~N~ySWnk~aNiLf 122 (454)
T KOG1282|consen 47 GYVTVNESEGRQLFYWFFESENN---PETDPLVLWLNGGPGCSSLGGLFEENGP-FRVKYNGKTLYLNPYSWNKEANILF 122 (454)
T ss_pred ceEECCCCCCceEEEEEEEccCC---CCCCCEEEEeCCCCCccchhhhhhhcCC-eEEcCCCCcceeCCccccccccEEE
Confidence 44566556788999999876543 25569999999999987543221 11 000 000111 11245777
Q ss_pred ECCC-CCCCCchhhHHHHhhccCCCchHHHHHH-HHHHHHcCCCCCCceEEEEechhHHHHHHHHh----hCC------C
Q 008873 368 LDNR-GTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA----RFP------D 435 (550)
Q Consensus 368 ~d~r-G~g~~~~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~----~~~------~ 435 (550)
+|.+ |.|.|=.. .......-.....+|...+ .+|+.+.|.-..+.+.|.|-||+|+.+-.+|. .+. -
T Consensus 123 Ld~PvGvGFSYs~-~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~i 201 (454)
T KOG1282|consen 123 LDQPVGVGFSYSN-TSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNI 201 (454)
T ss_pred EecCCcCCccccC-CCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcc
Confidence 7766 44433100 0000000111234555554 56777777777789999999999976655443 221 2
Q ss_pred eeEEEEEcCCcCC
Q 008873 436 VFQCAVSGAPVTS 448 (550)
Q Consensus 436 ~~~~~v~~~~~~~ 448 (550)
-+++.+++.|++|
T Consensus 202 NLkG~~IGNg~td 214 (454)
T KOG1282|consen 202 NLKGYAIGNGLTD 214 (454)
T ss_pred cceEEEecCcccC
Confidence 4799999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.5 Score=49.91 Aligned_cols=152 Identities=11% Similarity=0.105 Sum_probs=82.5
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceeeccCccccCCCCCccCCCc-EEEEEccCCc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGF 166 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~ 166 (550)
.+...+++.||+.+++..+. +.|-+++.+.+.....+. ...+. .. . ..+|.+ |+..+.-+|.
T Consensus 98 p~r~~~v~g~g~~iaagsdD----~~vK~~~~~D~s~~~~lrgh~apV-l~----l-------~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDD----TAVKLLNLDDSSQEKVLRGHDAPV-LQ----L-------SYDPKGNFLAVSSCDGK 161 (933)
T ss_pred cceEEEEecCCcEEEeecCc----eeEEEEeccccchheeecccCCce-ee----e-------eEcCCCCEEEEEecCce
Confidence 45567899999999887644 347777777665443333 22221 00 1 123444 7777766674
Q ss_pred cEEEEEeCCCce-eecccc----cCe---EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-
Q 008873 167 RHLYLHDINGTC-LGPITE----GDW---MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN- 237 (550)
Q Consensus 167 ~~l~~~~~~~~~-~~~lT~----~~~---~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~- 237 (550)
++++++..+. ..-||. .+. .....+.|+|+|..+++...++. ..+|+-. +.. ..-.|..
T Consensus 162 --v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~---Vkvy~r~----~we---~~f~Lr~~ 229 (933)
T KOG1274|consen 162 --VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT---VKVYSRK----GWE---LQFKLRDK 229 (933)
T ss_pred --EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe---EEEEccC----Cce---eheeeccc
Confidence 5555554432 222321 111 12223469999988888877653 4555322 221 0111111
Q ss_pred --CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 238 --GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 238 --~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
...+..+.|||+|+||+....+ .+|.+.+.+
T Consensus 230 ~~ss~~~~~~wsPnG~YiAAs~~~----g~I~vWnv~ 262 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNGKYIAASTLD----GQILVWNVD 262 (933)
T ss_pred ccccceEEEEEcCCCcEEeeeccC----CcEEEEecc
Confidence 1124556899999999766443 356666654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0017 Score=63.27 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=44.6
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+.+||||++||.++.|. -|.|+|.++.+..-+- .
T Consensus 294 n~f~FS~DG~~LA~VSqDG------------------------------------fLRvF~fdt~eLlg~m--------k 329 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDG------------------------------------FLRIFDFDTQELLGVM--------K 329 (636)
T ss_pred cceeEcCCCceEEEEecCc------------------------------------eEEEeeccHHHHHHHH--------H
Confidence 5788999999999997762 3678888876553220 0
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF 118 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~ 118 (550)
.-=+.+..++||||||+|+.--.. +--.||.+
T Consensus 330 SYFGGLLCvcWSPDGKyIvtGGED--DLVtVwSf 361 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGKYIVTGGED--DLVTVWSF 361 (636)
T ss_pred hhccceEEEEEcCCccEEEecCCc--ceEEEEEe
Confidence 111245678999999998764222 23345554
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.025 Score=48.87 Aligned_cols=102 Identities=25% Similarity=0.264 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCCceeecccccc-----------cchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhc--cCCCc
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWIN-----------TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN--CGRID 392 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~-----------~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~--~~~~~ 392 (550)
.+..++|++||.+.... ..|.- .--++.+...+.||-|+..|.-- .+.|.+..... +-...
T Consensus 99 ~~~kLlVLIHGSGvVrA--GQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~----~~kfye~k~np~kyirt~ 172 (297)
T KOG3967|consen 99 NPQKLLVLIHGSGVVRA--GQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNR----ERKFYEKKRNPQKYIRTP 172 (297)
T ss_pred CccceEEEEecCceEec--chHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCch----hhhhhhcccCcchhccch
Confidence 34468999999544322 12210 11123555678899998888541 11122111110 01122
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 435 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~ 435 (550)
.+.......+++.. ..+..|+++.||+||++++-++.+.|+
T Consensus 173 veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 173 VEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 33444444444332 356789999999999999999998874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.93 Score=51.35 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=41.1
Q ss_pred EEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec----cCccccCCCCCccCCCc-EEEEEccCCc
Q 008873 92 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL----HDCFTPLDKGVTKYSGG-FIWASEKTGF 166 (550)
Q Consensus 92 ~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~s~~~g~ 166 (550)
.++++|++..++... .. ..+|+.++..+|....+.......-.+. ...+.. +.....++++ .+|+++. +.
T Consensus 687 gVa~dp~~g~LyVad-~~--~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~-P~GIavspdG~~LYVADs-~n 761 (1057)
T PLN02919 687 DVCFEPVNEKVYIAM-AG--QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQ-PSGISLSPDLKELYIADS-ES 761 (1057)
T ss_pred EEEEecCCCeEEEEE-CC--CCeEEEEECCCCeEEEEecCCccccCCCCccccccccC-ccEEEEeCCCCEEEEEEC-CC
Confidence 578899655443332 22 2358999998887654432100000000 000100 1111234543 5667665 34
Q ss_pred cEEEEEeCCCceee
Q 008873 167 RHLYLHDINGTCLG 180 (550)
Q Consensus 167 ~~l~~~~~~~~~~~ 180 (550)
..|.+++++++..+
T Consensus 762 ~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 762 SSIRALDLKTGGSR 775 (1057)
T ss_pred CeEEEEECCCCcEE
Confidence 57888887765443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.069 Score=56.93 Aligned_cols=161 Identities=6% Similarity=-0.074 Sum_probs=83.1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEEC------C--CCc--------eE-EEEEeecCceeeccCccccCC
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI------K--TGQ--------RK-VILVEELDSWVNLHDCFTPLD 147 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~------~--~g~--------~~-~l~~~~~~~~~~~~~~~~~~~ 147 (550)
.....+..++|||||++++.-++.. .-.||.... . +|. +. .|..++.+ ..-+
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~--~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--------V~Dv- 135 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDR--LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD--------VLDV- 135 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcc--eEEEeeecccCCcccccccccccccceeeEEEEEecCCCc--------ccee-
Confidence 3456788899999999998876542 234555552 1 111 11 11111111 0001
Q ss_pred CCCccCCCcEEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 148 KGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 148 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
.|+|++.+++|-.-. ..+.+++..+-+. +.|-.+.-.|.+.. |+|-|++++-.+.+. ...+|+.+- -|
T Consensus 136 ---~Wsp~~~~lvS~s~D-nsViiwn~~tF~~~~vl~~H~s~VKGvs-~DP~Gky~ASqsdDr---tikvwrt~d--w~- 204 (942)
T KOG0973|consen 136 ---NWSPDDSLLVSVSLD-NSVIIWNAKTFELLKVLRGHQSLVKGVS-WDPIGKYFASQSDDR---TLKVWRTSD--WG- 204 (942)
T ss_pred ---ccCCCccEEEEeccc-ceEEEEccccceeeeeeecccccccceE-ECCccCeeeeecCCc---eEEEEEccc--ce-
Confidence 477877666654321 2355555444332 23333344455554 999998777555443 266776331 11
Q ss_pred CCCCCCeeeCCC-------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 227 HTLEAPVKLTNG-------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 227 ~~~~~~~~lt~~-------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
..+.++.. ......+|||||++|+...+--..-+.+.+++.
T Consensus 205 ----i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 205 ----IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ----eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 12233321 123445899999998765443233355666554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.45 Score=44.07 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=14.2
Q ss_pred ceEEEcCCCCeEEEEEEeC
Q 008873 5 TGYWWSLDSKFIAFTQVDS 23 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~ 23 (550)
.+-.|||||.-|.-.+-++
T Consensus 53 kgckWSPDGSciL~~sedn 71 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDN 71 (406)
T ss_pred ccceeCCCCceEEeecccC
Confidence 4668999999987655443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.099 Score=48.31 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=22.5
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG 123 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g 123 (550)
.-.++..+|||||+.|+.++.-.- +-.+|.+..+.|
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~l-riTVWSL~t~~~ 126 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDL-RITVWSLNTQKG 126 (447)
T ss_pred CCcceeeeECCCcceEeeeeccee-EEEEEEecccee
Confidence 445678899999998777654322 223565554433
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.021 Score=60.60 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=43.1
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC--CceEEEEEECCCCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQ 124 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~--~~~~l~~~~~~~g~ 124 (550)
+|.+.|.++...+.+.+ .....+.+|+|||||+.|+|+..-+. ++..||+.++.+..
T Consensus 330 ~L~~~D~dG~n~~~ve~--------~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~ 388 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEI--------EDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASG 388 (912)
T ss_pred eEEEEecCCCCceEEEe--------cCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccC
Confidence 78999999988776633 22456778999999999999444443 56789999998754
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.019 Score=57.55 Aligned_cols=146 Identities=17% Similarity=0.161 Sum_probs=80.1
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc-hhH-----hHHHH------hCCc
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV-DMR-----AQYLR------SKGI 363 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~-~~~-----~~~l~------~~G~ 363 (550)
..+.+....+..+..|++..... +...|+|+++-|||++......| ++.. ..- ...+. .+-.
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~~---~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a 118 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDKN---PQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTA 118 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCCC---CCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcC
Confidence 34555444456788887765532 25679999999999976532211 1100 000 00111 1235
Q ss_pred EEEEECCC-CCCCCchhhHHHHhhccCCCchHHHHHHHHHHH-HcCCCCCCceEEEEechhHHHHHHHHhh----C----
Q 008873 364 LVWKLDNR-GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI-KQGLAKVGHIGLYGWSYGGYLSAITLAR----F---- 433 (550)
Q Consensus 364 ~vv~~d~r-G~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~-~~~~~d~~~i~i~G~S~GG~~a~~~~~~----~---- 433 (550)
.++.+|.+ |.|.|-..... .... -..+.+|+..+++... ..+.....++.|+|.||||..+-.++.. .
T Consensus 119 nllfiDqPvGtGfSy~~~~~-~~~~-~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 119 NIIFLDQPVGSGFSYSKTPI-ERTS-DTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred cEEEecCCCCCCccCCCCCC-CccC-CHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 78999944 66654211000 0000 0112455555555433 3455556789999999999866555432 1
Q ss_pred --CCeeEEEEEcCCcCCc
Q 008873 434 --PDVFQCAVSGAPVTSW 449 (550)
Q Consensus 434 --~~~~~~~v~~~~~~~~ 449 (550)
+--+++++++.|.+|.
T Consensus 197 ~~~inl~Gi~igng~td~ 214 (437)
T PLN02209 197 NPPINLQGYVLGNPITHI 214 (437)
T ss_pred CCceeeeeEEecCcccCh
Confidence 1247899999998764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.3 Score=43.83 Aligned_cols=184 Identities=13% Similarity=0.132 Sum_probs=88.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.+++.+++......+- ++-.....-+++||.|-+++. ...+++-+||-. +.+...|-.+... ..
T Consensus 40 sv~ir~i~~~~~~~iY--------tEH~~~vtVAkySPsG~yiAS--GD~sG~vRIWdt---t~~~hiLKnef~v-~a-- 103 (603)
T KOG0318|consen 40 SVIIRNIDNPASVDIY--------TEHAHQVTVAKYSPSGFYIAS--GDVSGKVRIWDT---TQKEHILKNEFQV-LA-- 103 (603)
T ss_pred EEEEEECCCccceeee--------ccccceeEEEEeCCCceEEee--cCCcCcEEEEec---cCcceeeeeeeee-cc--
Confidence 4567777766554332 122344566789999986643 444455455543 2222233222110 00
Q ss_pred cCccccCCCCCccCCCc--EEEEEccC-CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 140 HDCFTPLDKGVTKYSGG--FIWASEKT-GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~s~~~-g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
+ +... .+|+.|+ ++.+-+.. -+.|.|+.|.-+ -.-.+|.....+.... +-|..-.-..+..+++. ..+
T Consensus 104 G----~I~D-i~Wd~ds~RI~avGEGrerfg~~F~~DSG~-SvGei~GhSr~ins~~-~KpsRPfRi~T~sdDn~--v~f 174 (603)
T KOG0318|consen 104 G----PIKD-ISWDFDSKRIAAVGEGRERFGHVFLWDSGN-SVGEITGHSRRINSVD-FKPSRPFRIATGSDDNT--VAF 174 (603)
T ss_pred c----cccc-ceeCCCCcEEEEEecCccceeEEEEecCCC-ccceeeccceeEeeee-ccCCCceEEEeccCCCe--EEE
Confidence 0 0000 1466665 55555543 378899988422 1223333322222211 22222222222222221 112
Q ss_pred EEEEeCCCCCCCCCCCeeeCC-----CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTN-----GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~-----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
|. | .|-++.. ....+.+.+||||+.++-+.++ ..++++|=.+|+++..|..+
T Consensus 175 fe------G-----PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD----gki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 175 FE------G-----PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD----GKIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred ee------C-----CCeeeeecccccccceeeEEECCCCCeEEEecCC----ccEEEEcCCCccEEEEecCC
Confidence 11 1 1111111 1135566799999988766554 47899998888887777754
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.4 Score=43.57 Aligned_cols=227 Identities=13% Similarity=0.074 Sum_probs=112.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE--eecCcee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV--EELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~--~~~~~~~ 137 (550)
+++++|.++|....- ...- ....-...-+.||-|.++++.+... .|+..++ |+...+.-. ....+..
T Consensus 109 ~~~vwd~~sg~iv~s-f~~~----~q~~~~Wp~~k~s~~D~y~ARvv~~-----sl~i~e~-t~n~~~~p~~~lr~~gi~ 177 (561)
T COG5354 109 NVFVWDIASGMIVFS-FNGI----SQPYLGWPVLKFSIDDKYVARVVGS-----SLYIHEI-TDNIEEHPFKNLRPVGIL 177 (561)
T ss_pred ceeEEeccCceeEee-cccc----CCcccccceeeeeecchhhhhhccC-----eEEEEec-CCccccCchhhcccccee
Confidence 689999999976421 1100 1111122346899999987766422 3677766 443321110 0001111
Q ss_pred eccCccccCCCCCccCCCcEEEEE-ccCC---ccEEEEEeCCCceeecccccCeEEEEE-EeEeecCCEEEEEEcCC---
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWAS-EKTG---FRHLYLHDINGTCLGPITEGDWMVEQI-VGVNEASGQVYFTGTLD--- 209 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s-~~~g---~~~l~~~~~~~~~~~~lT~~~~~~~~~-~~~s~dg~~l~f~~~~~--- 209 (550)
.|+..+. -.++.+.+.+ +..| .-.|+.+.. +...+.-| -+.+.+. ..|.+.|+.|.+.....
T Consensus 178 ----dFsisP~---~n~~~la~~tPEk~~kpa~~~i~sIp~-~s~l~tk~--lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 178 ----DFSISPE---GNHDELAYWTPEKLNKPAMVRILSIPK-NSVLVTKN--LFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred ----eEEecCC---CCCceEEEEccccCCCCcEEEEEEccC-CCeeeeee--eEeecccEEEEecCCceEEEEEEEeeec
Confidence 1222221 1233455544 3333 345666653 22222222 2333321 25889999988876532
Q ss_pred -CC--ceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCC
Q 008873 210 -GP--LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLT 286 (550)
Q Consensus 210 -~~--~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~ 286 (550)
.. ++..||..++ .+.. -+..+--.+-.|++.|+|+++.++.++. ..|..+...++ .|...-.+.+...+
T Consensus 248 nKsyfgesnLyl~~~--~e~~---i~V~~~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~l-r~Nl~~~~Pe~~rN 319 (561)
T COG5354 248 NKSYFGESNLYLLRI--TERS---IPVEKDLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDL-RGNLRFYFPEQKRN 319 (561)
T ss_pred ccceeccceEEEEee--cccc---cceeccccccceeeeecccCCceeEEec--ccccceeeccc-ccceEEecCCcccc
Confidence 11 2367888887 3321 1222211233899999999999887753 34567777777 34432222221111
Q ss_pred hhhhhcCCCCC-CeEEEEEcCCCcEEEEEEEcCCC
Q 008873 287 VPRIKRLQLEP-PDIVQIQANDGTVLYGALYKPDE 320 (550)
Q Consensus 287 ~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~P~~ 320 (550)
. ..+.+ ...+-+...++.+-...++-|.+
T Consensus 320 T-----~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 320 T-----IFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred c-----ccccCcccEEEEecCCccccceEEeccCC
Confidence 1 11222 23344445566555556666654
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0084 Score=54.31 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.3
Q ss_pred CCceEEEEechhHHHHHHHHh
Q 008873 411 VGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 411 ~~~i~i~G~S~GG~~a~~~~~ 431 (550)
..+|.++|||+||.++-+++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 368999999999999987776
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.82 Score=50.81 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=55.2
Q ss_pred ceeEEEEECCCCeEEEEEEecCC-C-ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc-
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQ-T-KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK- 163 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~-~-~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~- 163 (550)
..-..++|-.||++++...-..+ + ...|-+.+.+ |+..-..+ + ...+....+|.|.| ++..+.+
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~----------v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-P----------VDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-c----------CCCccCCccCCCCCCEEEEEEEc
Confidence 34567899999997765543222 2 2233333333 44222111 1 11122233566655 5555544
Q ss_pred CCccEEEEEeCCCceee----cccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 164 TGFRHLYLHDINGTCLG----PITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~----~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
.+...|..+..+|-.-. ++...+..+... .|+.|+..|++...
T Consensus 278 ~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l-~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 278 PDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL-AWNSDSEILAVWLE 324 (928)
T ss_pred CCCcEEEEEecCCcEeeeEecCCCCCCceeeEE-EECCCCCEEEEEec
Confidence 34466667776663211 222334445555 59999998887653
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.066 Score=57.01 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=70.7
Q ss_pred cEEEEEccCCccEEEEEeCCCceeecc-cccCeEEEEEEeEeecCCEEEE-EEcCCCCceeEEEEEEeCCCCCCCCCCCe
Q 008873 156 GFIWASEKTGFRHLYLHDINGTCLGPI-TEGDWMVEQIVGVNEASGQVYF-TGTLDGPLESHLYCAKLYPDWNHTLEAPV 233 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~~~~~~l-T~~~~~~~~~~~~s~dg~~l~f-~~~~~~~~~~~l~~v~~~~~g~~~~~~~~ 233 (550)
+++|+++..| +|.++|.+|...+.+ +.....+-.+. |||||++|+| ++-+.-.+...||+-++...++ .+.
T Consensus 320 kiAfv~~~~~--~L~~~D~dG~n~~~ve~~~~~~i~sP~-~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~----~~v 392 (912)
T TIGR02171 320 KLAFRNDVTG--NLAYIDYTKGASRAVEIEDTISVYHPD-ISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS----GLV 392 (912)
T ss_pred eEEEEEcCCC--eEEEEecCCCCceEEEecCCCceecCc-CCCCCCEEEEEEeecCCCCCceEEEEehhccCC----Cce
Confidence 4888887655 899999999888888 77766666554 9999999999 5545422346799999854454 444
Q ss_pred eeCCCC-ceEEEEECCCCCEEEEeecCCC-CC-------CEEEEEEcCCCc
Q 008873 234 KLTNGK-GKHVAVLDHNMRNFVDFHDSLD-SP-------PRILLCSLQDGS 275 (550)
Q Consensus 234 ~lt~~~-~~~~~~~s~dg~~l~~~~s~~~-~p-------~~l~~~~~~~g~ 275 (550)
.|.-+. .+-.--+..+|+..+.-.+++. .- ...|.+...+|+
T Consensus 393 kl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gk 443 (912)
T TIGR02171 393 KLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGK 443 (912)
T ss_pred EeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCC
Confidence 554331 1111134566655433333332 21 345666776665
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.022 Score=56.91 Aligned_cols=106 Identities=14% Similarity=0.246 Sum_probs=65.0
Q ss_pred eEEEcC-CCCeEEEEEEeCCCCCeEEEeecCCCCC----------CCCCcccccC-CCCCC----CCCeEEEEEEECCCC
Q 008873 6 GYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSV----------GSEAQEDHAY-PFAGA----SNVKVRLGVVSAAGG 69 (550)
Q Consensus 6 ~~~wSP-dg~~lay~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~y-~~~g~----~~~~~~l~~~d~~~~ 69 (550)
.+.|.| |-.+||-. .+++.+..+++...+..+. ....+..+++ |.+.+ ......|.+||+.++
T Consensus 632 Dl~WdPFD~~rLAVa-~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~ 710 (1012)
T KOG1445|consen 632 DLHWDPFDDERLAVA-TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA 710 (1012)
T ss_pred ecccCCCChHHeeec-ccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh
Confidence 456776 55677764 5556666677666544421 1123334555 23222 233356778899988
Q ss_pred ceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 70 PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
+.+.- + ..-...+..++|||||++++.+.+... |.+++..+++
T Consensus 711 ~~~~~-l-------~gHtdqIf~~AWSpdGr~~AtVcKDg~----~rVy~Prs~e 753 (1012)
T KOG1445|consen 711 KLYSR-L-------VGHTDQIFGIAWSPDGRRIATVCKDGT----LRVYEPRSRE 753 (1012)
T ss_pred hhhhe-e-------ccCcCceeEEEECCCCcceeeeecCce----EEEeCCCCCC
Confidence 66421 1 222346788999999999999886653 7777777765
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.076 Score=51.53 Aligned_cols=180 Identities=13% Similarity=0.125 Sum_probs=85.7
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
-|.+||++||+.. .+.+ +.....+.+-||+.-++++-.- ...|...|+.+|+..+=....-..|..
T Consensus 281 ~lKlwDtETG~~~~~f~~----------~~~~~cvkf~pd~~n~fl~G~s---d~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL----------DKVPTCVKFHPDNQNIFLVGGS---DKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred eeeeeccccceEEEEEec----------CCCceeeecCCCCCcEEEEecC---CCcEEEEeccchHHHHHHHhhhhheee
Confidence 4788999999765 3333 3345667899999644444211 124788888888743211111112222
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
+.|.+ .+..|+-.||. +.-.||-....- ..+.+.... .... .....|.++++.-.+..+ ...+|
T Consensus 348 ----i~F~~-----~g~rFissSDd-ks~riWe~~~~v-~ik~i~~~~~hsmP-~~~~~P~~~~~~aQs~dN---~i~if 412 (503)
T KOG0282|consen 348 ----ITFVD-----EGRRFISSSDD-KSVRIWENRIPV-PIKNIADPEMHTMP-CLTLHPNGKWFAAQSMDN---YIAIF 412 (503)
T ss_pred ----eEEcc-----CCceEeeeccC-ccEEEEEcCCCc-cchhhcchhhccCc-ceecCCCCCeehhhccCc---eEEEE
Confidence 22221 22235555554 333445443211 122222211 1111 224677777666554432 13344
Q ss_pred EEEeCCCCCCCCCCCeeeCC--CCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 218 CAKLYPDWNHTLEAPVKLTN--GKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~--~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.+.. .- +....++... -.| ...+.|||||++|+.- +.-..++..|..+-+
T Consensus 413 s~~~--~~--r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG----dsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 413 STVP--PF--RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG----DSDGKVNFWDWKTTK 465 (503)
T ss_pred eccc--cc--ccCHhhhhcceeccCceeeEEEcCCCCeEEee----cCCccEEEeechhhh
Confidence 3222 00 0001111110 012 3445899999987432 233578888875544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.1 Score=42.05 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=92.2
Q ss_pred cEEEEEccCCccEEEEEeCCCcee-eccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCe
Q 008873 156 GFIWASEKTGFRHLYLHDINGTCL-GPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPV 233 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~ 233 (550)
..+++..|.|.. ++++|..+++. ..++.. +.+...-..+|+||++||-+-++....+--|-+-+.. .+- .++.
T Consensus 18 ~avafaRRPG~~-~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~---~ri~ 92 (305)
T PF07433_consen 18 EAVAFARRPGTF-ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGY---RRIG 92 (305)
T ss_pred eEEEEEeCCCcE-EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCc---EEEe
Confidence 367777787854 66777766654 355544 4455555569999999998887643333333333541 111 1233
Q ss_pred eeCC-CCceEEEEECCCCCEEEEeecCCC-C-------------CCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCC
Q 008873 234 KLTN-GKGKHVAVLDHNMRNFVDFHDSLD-S-------------PPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPP 298 (550)
Q Consensus 234 ~lt~-~~~~~~~~~s~dg~~l~~~~s~~~-~-------------p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~ 298 (550)
+.+. +-|-|.+.+.|||+.|++.-.... . -|.|..+|..+|+.+.+..- .+.++ ....
T Consensus 93 E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L----p~~~~---~lSi 165 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL----PPDLH---QLSI 165 (305)
T ss_pred EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec----Ccccc---ccce
Confidence 3332 234577789999988876433221 1 25666677777774433211 11111 1123
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCC
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPC 339 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~ 339 (550)
+.+.+.. +|..+.+.-|..+.. ..|-+|.+|....
T Consensus 166 RHLa~~~-~G~V~~a~Q~qg~~~-----~~~PLva~~~~g~ 200 (305)
T PF07433_consen 166 RHLAVDG-DGTVAFAMQYQGDPG-----DAPPLVALHRRGG 200 (305)
T ss_pred eeEEecC-CCcEEEEEecCCCCC-----ccCCeEEEEcCCC
Confidence 5555544 788788887776542 2344566666444
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.2 Score=40.34 Aligned_cols=147 Identities=12% Similarity=0.202 Sum_probs=72.3
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g 165 (550)
.+.+.+++|||.|++++..+-... .-||. -..++...+...++..- +. +.. +|+.++ ++....|+-
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t--~~Iw~--k~~~efecv~~lEGHEn-EV-K~V-------aws~sG~~LATCSRDK 127 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDAT--VVIWK--KEDGEFECVATLEGHEN-EV-KCV-------AWSASGNYLATCSRDK 127 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccce--EEEee--cCCCceeEEeeeecccc-ce-eEE-------EEcCCCCEEEEeeCCC
Confidence 357888999999998876653321 12333 23455444444322200 00 000 344444 444433433
Q ss_pred ccEEEEEeCC-Cce---eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC-c
Q 008873 166 FRHLYLHDIN-GTC---LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-G 240 (550)
Q Consensus 166 ~~~l~~~~~~-~~~---~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~-~ 240 (550)
.+|+...+ +.+ .-.|+.+.-+|.... |.|.- -|+|++.-++. ..+|+-.. ++.=. -...|.... .
T Consensus 128 --SVWiWe~deddEfec~aVL~~HtqDVK~V~-WHPt~-dlL~S~SYDnT--Ik~~~~~~--dddW~--c~~tl~g~~~T 197 (312)
T KOG0645|consen 128 --SVWIWEIDEDDEFECIAVLQEHTQDVKHVI-WHPTE-DLLFSCSYDNT--IKVYRDED--DDDWE--CVQTLDGHENT 197 (312)
T ss_pred --eEEEEEecCCCcEEEEeeeccccccccEEE-EcCCc-ceeEEeccCCe--EEEEeecC--CCCee--EEEEecCccce
Confidence 34444332 222 345666555666655 88864 37777776553 67776543 22100 012222211 1
Q ss_pred eEEEEECCCCCEEEEe
Q 008873 241 KHVAVLDHNMRNFVDF 256 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~ 256 (550)
.-+.+|+++|.+|+-.
T Consensus 198 VW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 198 VWSLAFDNIGSRLVSC 213 (312)
T ss_pred EEEEEecCCCceEEEe
Confidence 3344788888776533
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=44.87 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=96.5
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCcee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~ 137 (550)
..+|+|+..++++.++.- .. ..+++++.|+++|+.|+.-...+ .|.+.|.+.-+. +.+.......+.
T Consensus 197 ~~vylW~~~s~~v~~l~~-------~~-~~~vtSv~ws~~G~~LavG~~~g----~v~iwD~~~~k~~~~~~~~h~~rvg 264 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCS-------FG-EELVTSVKWSPDGSHLAVGTSDG----TVQIWDVKEQKKTRTLRGSHASRVG 264 (484)
T ss_pred ceEEEEecCCCceEEeEe-------cC-CCceEEEEECCCCCEEEEeecCC----eEEEEehhhccccccccCCcCceeE
Confidence 368999999999887732 12 67889999999999887765443 255556554332 222110111111
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCce--eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~--~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
. + .|... .+..-.++| .|..+|....+ .+.+....-+|-... |++|++.++--++++. ..
T Consensus 265 ~-------l----aW~~~-~lssGsr~~--~I~~~dvR~~~~~~~~~~~H~qeVCgLk-ws~d~~~lASGgnDN~---~~ 326 (484)
T KOG0305|consen 265 S-------L----AWNSS-VLSSGSRDG--KILNHDVRISQHVVSTLQGHRQEVCGLK-WSPDGNQLASGGNDNV---VF 326 (484)
T ss_pred E-------E----eccCc-eEEEecCCC--cEEEEEEecchhhhhhhhcccceeeeeE-ECCCCCeeccCCCccc---eE
Confidence 0 0 23322 222222233 34444432211 122333455666654 9999987764444432 34
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
|| +. .... ....++.- ..+-..+|+|--+-|+.+..+..+ ..|...+..+|+.+..+
T Consensus 327 Iw--d~--~~~~---p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D-~~i~fwn~~~g~~i~~v 384 (484)
T KOG0305|consen 327 IW--DG--LSPE---PKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD-RCIKFWNTNTGARIDSV 384 (484)
T ss_pred ec--cC--CCcc---ccEEEeccceeeeEeeeCCCccCceEEcCCCcc-cEEEEEEcCCCcEeccc
Confidence 44 43 1211 23333332 224455888876667666554333 46777777777655433
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.2 Score=39.88 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=58.1
Q ss_pred EEEEEccCCccEEEEEeCCC----ceeeccccc---CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC
Q 008873 157 FIWASEKTGFRHLYLHDING----TCLGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL 229 (550)
Q Consensus 157 ~~~~s~~~g~~~l~~~~~~~----~~~~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~ 229 (550)
++...+..| +.|+.++-+ .+..+++.- +....... +|||+|+|+-.+.+.. ..||..+- . -
T Consensus 181 ml~a~nnkG--~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~-lSPd~k~lat~ssdkt---v~iwn~~~--~-~--- 248 (311)
T KOG0315|consen 181 MLAAANNKG--NCYVWRLLNHQTASELEPVHKFQAHNGHILRCL-LSPDVKYLATCSSDKT---VKIWNTDD--F-F--- 248 (311)
T ss_pred EEEEecCCc--cEEEEEccCCCccccceEhhheecccceEEEEE-ECCCCcEEEeecCCce---EEEEecCC--c-e---
Confidence 554544445 345555433 234555542 22333343 8999999887766543 56665442 1 0
Q ss_pred CCCeeeCCCCce-EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEe
Q 008873 230 EAPVKLTNGKGK-HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 279 (550)
Q Consensus 230 ~~~~~lt~~~~~-~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~ 279 (550)
+-..+++...++ =.++||.||+||+ +.++. .-+.+| +++.++++++
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~Ylv-Tassd-~~~rlW--~~~~~k~v~q 295 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLV-TASSD-HTARLW--DLSAGKEVRQ 295 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEE-ecCCC-Cceeec--ccccCceeee
Confidence 123455555444 4469999999875 43433 333555 4556765543
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.052 Score=51.40 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCc--EEEEECCCCCCC---CchhhHHHHhhccCCCchHHHHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI--LVWKLDNRGTAR---RGLKFEASIKHNCGRIDAEDQLTGAEW 402 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~--~vv~~d~rG~g~---~~~~~~~~~~~~~~~~~~~D~~~~~~~ 402 (550)
.-++||+||...+ |...-...++.....|+ ..|.+-++..|. |.-+-+. -.+...++...+++
T Consensus 116 k~vlvFvHGfNnt------f~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS------~~~Sr~aLe~~lr~ 183 (377)
T COG4782 116 KTVLVFVHGFNNT------FEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRES------TNYSRPALERLLRY 183 (377)
T ss_pred CeEEEEEcccCCc------hhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhh------hhhhHHHHHHHHHH
Confidence 4699999995433 21111223455555553 344455543331 2211111 12236788899999
Q ss_pred HHHcCCCCCCceEEEEechhHHHHHHHHhh----C----CCeeEEEEEcCCcCCc
Q 008873 403 LIKQGLAKVGHIGLYGWSYGGYLSAITLAR----F----PDVFQCAVSGAPVTSW 449 (550)
Q Consensus 403 l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~----~----~~~~~~~v~~~~~~~~ 449 (550)
|.+.+. ..+|.|++||||.++++.++-+ . +.+|+-.|..+|=.|.
T Consensus 184 La~~~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 184 LATDKP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred HHhCCC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 998764 4689999999999999877643 1 2346777777775553
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.2 Score=39.05 Aligned_cols=199 Identities=16% Similarity=0.217 Sum_probs=96.6
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE----EEEEeecCceeeccCccccCCCCCccCCCcEEEEEc
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK----VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE 162 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 162 (550)
.+.+...+|||+|.+|+.-++... -.+...+.++-+.. .+.-.. .. + ....+++.+ +.++-+..|-
T Consensus 89 kgsiyc~~ws~~geliatgsndk~--ik~l~fn~dt~~~~g~dle~nmhd-gt-i---rdl~fld~~---~s~~~il~s~ 158 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKT--IKVLPFNADTCNATGHDLEFNMHD-GT-I---RDLAFLDDP---ESGGAILASA 158 (350)
T ss_pred CccEEEEEecCccCeEEecCCCce--EEEEecccccccccCcceeeeecC-Cc-e---eeeEEecCC---CcCceEEEec
Confidence 456777899999999988765532 12333344332211 111110 00 0 012233211 2344566666
Q ss_pred cCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC---CC
Q 008873 163 KTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT---NG 238 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt---~~ 238 (550)
..|--.||+.|-..|+ ...++....++-....|+ | ..+.++..+.. ...|-+.+ ... +..|- .+
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~-~m~~sgsqdkt--irfwdlrv--~~~-----v~~l~~~~~~ 226 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--G-AMFASGSQDKT--IRFWDLRV--NSC-----VNTLDNDFHD 226 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEEEec--C-cEEEccCCCce--EEEEeeec--cce-----eeeccCcccC
Confidence 6677789998854443 445554444554444453 3 45555554432 23332222 110 11111 01
Q ss_pred Cc-----eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEE
Q 008873 239 KG-----KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYG 313 (550)
Q Consensus 239 ~~-----~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 313 (550)
.| ...+.+.|.|+.|+--..+ +.-.++|+..|+.+++..+.+. .+....+.+......+..-...|..
T Consensus 227 ~glessavaav~vdpsgrll~sg~~d----ssc~lydirg~r~iq~f~phsa---dir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHAD----SSCMLYDIRGGRMIQRFHPHSA---DIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCC----CceEEEEeeCCceeeeeCCCcc---ceeEEEeCCCceEEEEecccceEEE
Confidence 12 3445688999876533322 3566778878877776665432 3333444444444444444444444
Q ss_pred E
Q 008873 314 A 314 (550)
Q Consensus 314 ~ 314 (550)
.
T Consensus 300 t 300 (350)
T KOG0641|consen 300 T 300 (350)
T ss_pred e
Confidence 4
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=95.79 E-value=4.8 Score=45.83 Aligned_cols=122 Identities=7% Similarity=0.067 Sum_probs=63.0
Q ss_pred EEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc--eeecc--C-ccccCCCCCccCC-CcEEEEEccC
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS--WVNLH--D-CFTPLDKGVTKYS-GGFIWASEKT 164 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~--~~~~~--~-~~~~~~~~~~~~~-~~~~~~s~~~ 164 (550)
..+++.++|..|+.. +... ..|.+++..++..+.+......+ +.... . .....+.....++ ++.+|+++.
T Consensus 627 ~GIavd~~gn~LYVa-Dt~n--~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~- 702 (1057)
T PLN02919 627 QGLAYNAKKNLLYVA-DTEN--HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA- 702 (1057)
T ss_pred cEEEEeCCCCEEEEE-eCCC--ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-
Confidence 446788887765444 3332 25888898888776664321000 00000 0 0000011112344 456667654
Q ss_pred CccEEEEEeCCCceeeccccc--------C------e-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 165 GFRHLYLHDINGTCLGPITEG--------D------W-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~--------~------~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
+...|++++..++..+.+... . . ...++ .++++|+.||++...+ ..|.++++
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GI-avspdG~~LYVADs~n----~~Irv~D~ 769 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGI-SLSPDLKELYIADSES----SSIRALDL 769 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEE-EEeCCCCEEEEEECCC----CeEEEEEC
Confidence 456788888766544332210 0 0 01123 4889999999876544 35666676
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.77 E-value=2.2 Score=41.80 Aligned_cols=181 Identities=12% Similarity=0.075 Sum_probs=99.7
Q ss_pred CCCeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC------ceEEE
Q 008873 55 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG------QRKVI 128 (550)
Q Consensus 55 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g------~~~~l 128 (550)
..+...|+|+-+....+.. ++ ..-...+..+.|.|-|++|+..++.. ...||.+...+- ..+.|
T Consensus 335 s~td~~i~V~kv~~~~P~~-t~-------~GH~g~V~alk~n~tg~LLaS~SdD~--TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVK-TF-------IGHHGEVNALKWNPTGSLLASCSDDG--TLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred cCCCceEEEEEecCCCcce-ee-------ecccCceEEEEECCCCceEEEecCCC--eeEeeecCCCcchhhhhhhccce
Confidence 3344456666665443322 11 23345688899999999998887654 345777543321 11222
Q ss_pred EEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCc-eeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 129 LVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~-~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
.+ -.|++.++.-.. .+.+..++..+ .++ -+-++|...+ ..-.++.+.-.|.... +||+|++++.- +
T Consensus 405 ~t---~~wsp~g~v~~n-----~~~~~~l~sas-~ds--tV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~ylAsG-s 471 (524)
T KOG0273|consen 405 YT---IKWSPTGPVTSN-----PNMNLMLASAS-FDS--TVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGRYLASG-S 471 (524)
T ss_pred ee---EeecCCCCccCC-----CcCCceEEEee-cCC--eEEEEEccCCceeEeeccCCCceEEEE-ecCCCcEEEec-C
Confidence 22 146554432111 11222133332 223 3444554443 4556777776777665 99999877643 4
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
.++ ..+++.... +. -.+.....+++..+.|+.+|.++...++.. .+.++|+
T Consensus 472 ~dg--~V~iws~~~---~~----l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~----~vcvldl 522 (524)
T KOG0273|consen 472 LDG--CVHIWSTKT---GK----LVKSYQGTGGIFELCWNAAGDKLGACASDG----SVCVLDL 522 (524)
T ss_pred CCC--eeEeccccc---hh----eeEeecCCCeEEEEEEcCCCCEEEEEecCC----CceEEEe
Confidence 433 267775543 21 344455555678889999999887776652 4455554
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.029 Score=65.82 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=59.9
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.++++||.++... .|..+.+.| ..++.|+.++.+|.+.... ....++++.+.+......-.
T Consensus 1069 ~~l~~lh~~~g~~~-------~~~~l~~~l-~~~~~v~~~~~~g~~~~~~----------~~~~l~~la~~~~~~i~~~~ 1130 (1296)
T PRK10252 1069 PTLFCFHPASGFAW-------QFSVLSRYL-DPQWSIYGIQSPRPDGPMQ----------TATSLDEVCEAHLATLLEQQ 1130 (1296)
T ss_pred CCeEEecCCCCchH-------HHHHHHHhc-CCCCcEEEEECCCCCCCCC----------CCCCHHHHHHHHHHHHHhhC
Confidence 56788999766532 233344444 4579999999998864311 01123333333222222111
Q ss_pred CCCCceEEEEechhHHHHHHHHhh---CCCeeEEEEEcCC
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAP 445 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~---~~~~~~~~v~~~~ 445 (550)
...++.++|||+||.++..++.+ .++.+..++...+
T Consensus 1131 -~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1131 -PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred -CCCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 12479999999999999998875 4677777776654
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.03 Score=50.10 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=69.8
Q ss_pred CCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhcc-----------CCC------CCCc-cccc
Q 008873 411 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM-----------GLP------SEDP-VGYE 472 (550)
Q Consensus 411 ~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------g~~------~~~~-~~~~ 472 (550)
-.+.+|.|-||||.++..+...++..+ +.+|+..+......+.+..+ ..+ ..++ +.|.
T Consensus 194 ~g~~~~~g~Smgg~~a~~vgS~~q~Pv----a~~p~l~~~~asvs~teg~l~~~~s~~~~~~~~t~~~~~~~r~p~Q~~~ 269 (371)
T KOG1551|consen 194 LGNLNLVGRSMGGDIANQVGSLHQKPV----ATAPCLNSSKASVSATEGLLLQDTSKMKRFNQTTNKSGYTSRNPAQSYH 269 (371)
T ss_pred cccceeeeeecccHHHHhhcccCCCCc----cccccccccccchhhhhhhhhhhhHHHHhhccCcchhhhhhhCchhhHH
Confidence 468999999999999999998766543 33343333222111111110 000 0000 0010
Q ss_pred -------c-------------CChhhhhhcCCCc-----EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 008873 473 -------Y-------------SSVMHHVHKMKGK-----LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527 (550)
Q Consensus 473 -------~-------------~~~~~~~~~i~~P-----~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H 527 (550)
. .+-..++.++.+| +.++.+.+|.-+|-.....+.+.. -|..++++. .||
T Consensus 270 ~~~~~~srn~~~E~~~~Mr~vmd~~T~v~~fp~Pvdpsl~ivv~A~~D~Yipr~gv~~lQ~~W--Pg~eVr~~e---gGH 344 (371)
T KOG1551|consen 270 LLSKEQSRNSRKESLIFMRGVMDECTHVANFPVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIW--PGCEVRYLE---GGH 344 (371)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHhhchhhcCCCCCCCCeEEEEEecCCccccccCcHHHHHhC--CCCEEEEee---cCc
Confidence 0 1112344555444 356678999999876555554443 244445444 589
Q ss_pred cCCCCCcHHHHHHHHHHHHHH
Q 008873 528 MPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 528 ~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.-..-.+...+.++|.+-|++
T Consensus 345 Vsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 345 VSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred eeeeehhchHHHHHHHHHHHh
Confidence 765555556677777776654
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.033 Score=55.53 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCCceeecccccccchhH-hHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMR-AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~-~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
.-+|+.+|||+......+. -..+ .++..+.|..|+.+||.-..... | ...++++..|.-|+++.
T Consensus 396 ~sli~HcHGGGfVAqsSkS----HE~YLr~Wa~aL~cPiiSVdYSLAPEaP--F---------PRaleEv~fAYcW~inn 460 (880)
T KOG4388|consen 396 RSLIVHCHGGGFVAQSSKS----HEPYLRSWAQALGCPIISVDYSLAPEAP--F---------PRALEEVFFAYCWAINN 460 (880)
T ss_pred ceEEEEecCCceeeecccc----ccHHHHHHHHHhCCCeEEeeeccCCCCC--C---------CcHHHHHHHHHHHHhcC
Confidence 3589999999776543222 1222 34455789999999997654221 1 12378888999999876
Q ss_pred CC---CCCCceEEEEechhHHHHHHHHh
Q 008873 407 GL---AKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 407 ~~---~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.. -..+||++.|-|.||.+..-++.
T Consensus 461 ~allG~TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 461 CALLGSTGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred HHHhCcccceEEEeccCCCcceeehhHH
Confidence 21 35689999999999997665543
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.049 Score=52.92 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcE---EEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~---vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
+.|+ +++||..... .. +..+...+...|+. +..+++.+...... .. ...+-+.+-++.+
T Consensus 59 ~~pi-vlVhG~~~~~---~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~-------~~~~ql~~~V~~~ 120 (336)
T COG1075 59 KEPI-VLVHGLGGGY---GN----FLPLDYRLAILGWLTNGVYAFELSGGDGTYS---LA-------VRGEQLFAYVDEV 120 (336)
T ss_pred CceE-EEEccCcCCc---ch----hhhhhhhhcchHHHhcccccccccccCCCcc---cc-------ccHHHHHHHHHHH
Confidence 4454 5689963221 12 22234456777777 77887775411110 00 0122233334444
Q ss_pred HHcCCCCCCceEEEEechhHHHHHHHHhhCC--CeeEEEEEcCCc
Q 008873 404 IKQGLAKVGHIGLYGWSYGGYLSAITLARFP--DVFQCAVSGAPV 446 (550)
Q Consensus 404 ~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~--~~~~~~v~~~~~ 446 (550)
.... ...+|.++||||||..+.+++...+ .+++..+..++.
T Consensus 121 l~~~--ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 121 LAKT--GAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred Hhhc--CCCceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 3332 2378999999999999999998877 788888887664
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.2 Score=46.31 Aligned_cols=172 Identities=11% Similarity=0.042 Sum_probs=83.4
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceeec
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNL 139 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~~ 139 (550)
+.+|.+++.....+-- .....+..++++|-|=+.+..+.. ...+||.+|- -.+-+|... -++ .
T Consensus 475 vRLWsl~t~s~~V~y~--------GH~~PVwdV~F~P~GyYFatas~D--~tArLWs~d~--~~PlRifaghlsD----V 538 (707)
T KOG0263|consen 475 VRLWSLDTWSCLVIYK--------GHLAPVWDVQFAPRGYYFATASHD--QTARLWSTDH--NKPLRIFAGHLSD----V 538 (707)
T ss_pred eeeeecccceeEEEec--------CCCcceeeEEecCCceEEEecCCC--ceeeeeeccc--CCchhhhcccccc----c
Confidence 3445666654443321 223346678899998766555322 2347888765 233333221 111 0
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
....+ .|+. +++.-..+-.-++|-+- .|...|..|.+.-.+.... +||+|++|+-.+ .++ ...||
T Consensus 539 -~cv~F-------HPNs~Y~aTGSsD~tVRlWDv~-~G~~VRiF~GH~~~V~al~-~Sp~Gr~LaSg~-ed~--~I~iW- 604 (707)
T KOG0263|consen 539 -DCVSF-------HPNSNYVATGSSDRTVRLWDVS-TGNSVRIFTGHKGPVTALA-FSPCGRYLASGD-EDG--LIKIW- 604 (707)
T ss_pred -ceEEE-------CCcccccccCCCCceEEEEEcC-CCcEEEEecCCCCceEEEE-EcCCCceEeecc-cCC--cEEEE-
Confidence 11111 2222 33221111123344332 3444566665555566554 999998776333 332 25566
Q ss_pred EEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 219 AKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
|+. .|+ ...++-. .+-..+.+||.||..|+.- +.+. .+.+.|+.
T Consensus 605 -Dl~-~~~----~v~~l~~Ht~ti~SlsFS~dg~vLasg--g~Dn--sV~lWD~~ 649 (707)
T KOG0263|consen 605 -DLA-NGS----LVKQLKGHTGTIYSLSFSRDGNVLASG--GADN--SVRLWDLT 649 (707)
T ss_pred -EcC-CCc----chhhhhcccCceeEEEEecCCCEEEec--CCCC--eEEEEEch
Confidence 652 233 2233322 2237788999999866533 2222 44454653
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.015 Score=59.99 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHc--C--CCC---CCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 393 AEDQLTGAEWLIKQ--G--LAK---VGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 393 ~~D~~~~~~~l~~~--~--~~d---~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
.+-+.+|++++.+. + .-+ |..|+|+||||||.+|..+++ +|+..++.
T Consensus 156 tEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~s 209 (973)
T KOG3724|consen 156 TEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQGS 209 (973)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccch
Confidence 34455667776653 1 223 667999999999999988777 45544443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.31 Score=46.71 Aligned_cols=116 Identities=9% Similarity=0.069 Sum_probs=60.3
Q ss_pred EEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC-------CceEEEEEECCCCceEEEEEeecC
Q 008873 62 GVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-------TKLKVLKFDIKTGQRKVILVEELD 134 (550)
Q Consensus 62 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~-------~~~~l~~~~~~~g~~~~l~~~~~~ 134 (550)
.|||+.+|+-..+ + ..--..+..+.|||+|-.|+..+.... .+..+|.|++.+..+.++.
T Consensus 328 RvWDlRtgr~im~-L-------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk----- 394 (459)
T KOG0272|consen 328 RVWDLRTGRCIMF-L-------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVK----- 394 (459)
T ss_pred heeecccCcEEEE-e-------cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheE-----
Confidence 4789999976544 2 222346788999999999887654432 1122344443333222221
Q ss_pred ceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 135 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
|.| ..+.|+..+.-+..-.||.-. +....+.|..++-.|-... .++|+..|.-.+-
T Consensus 395 --------~~p-------~~g~fL~TasyD~t~kiWs~~-~~~~~ksLaGHe~kV~s~D-is~d~~~i~t~s~ 450 (459)
T KOG0272|consen 395 --------YSP-------QEGYFLVTASYDNTVKIWSTR-TWSPLKSLAGHEGKVISLD-ISPDSQAIATSSF 450 (459)
T ss_pred --------ecc-------cCCeEEEEcccCcceeeecCC-CcccchhhcCCccceEEEE-eccCCceEEEecc
Confidence 111 122355544334444555432 2334455655544444433 6788876654433
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.22 Score=47.45 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=58.4
Q ss_pred EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC
Q 008873 157 FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 236 (550)
Q Consensus 157 ~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt 236 (550)
|+-.||. |.-.||-. ....+.++|+...|+|.... |.|. +.|++++.++.. ..++ |.. .|+ +|.
T Consensus 195 F~t~SdD-g~ikiWdf-~~~kee~vL~GHgwdVksvd-WHP~-kgLiasgskDnl--VKlW--Dpr-Sg~-------cl~ 258 (464)
T KOG0284|consen 195 FLTCSDD-GTIKIWDF-RMPKEERVLRGHGWDVKSVD-WHPT-KGLIASGSKDNL--VKLW--DPR-SGS-------CLA 258 (464)
T ss_pred eEEecCC-CeEEEEec-cCCchhheeccCCCCcceec-cCCc-cceeEEccCCce--eEee--cCC-Ccc-------hhh
Confidence 6655654 43334433 23556788888899998765 9887 467778777652 4444 542 222 222
Q ss_pred CC----CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 237 NG----KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 237 ~~----~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.. ..+..+.|++++.+|+-. |. ...+.++|+.+-+
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~-sk---D~~~kv~DiR~mk 297 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTG-SK---DQSCKVFDIRTMK 297 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEc-cC---CceEEEEehhHhH
Confidence 11 224556899999766433 32 2477888876333
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.52 Score=49.77 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=37.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
.|.+||++++.....-.+..++.-.........++|+|||..+++..-+. .|-+++.++.+..
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~----~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN----TVKVYSRKGWELQ 223 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC----eEEEEccCCceeh
Confidence 46788999876542211111111122245678899999977555543332 3778888888764
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.12 Score=51.98 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=15.3
Q ss_pred eEEEcCCCCeEEEEEEe
Q 008873 6 GYWWSLDSKFIAFTQVD 22 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~ 22 (550)
+++|||||+++|-+..|
T Consensus 725 ~~AWSpdGr~~AtVcKD 741 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKD 741 (1012)
T ss_pred EEEECCCCcceeeeecC
Confidence 68899999999998776
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=5.3 Score=44.31 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=31.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEEC-CCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ws-pDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
.+.+||+.++..... +. ....+..+.|+ ++|..++...... .|++.|+.+++
T Consensus 599 ~v~iWd~~~~~~~~~-~~--------~~~~v~~v~~~~~~g~~latgs~dg----~I~iwD~~~~~ 651 (793)
T PLN00181 599 SVKLWSINQGVSIGT-IK--------TKANICCVQFPSESGRSLAFGSADH----KVYYYDLRNPK 651 (793)
T ss_pred EEEEEECCCCcEEEE-Ee--------cCCCeEEEEEeCCCCCEEEEEeCCC----eEEEEECCCCC
Confidence 577889987754321 11 12245667884 5788877765332 47777877654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.2 Score=42.81 Aligned_cols=148 Identities=11% Similarity=0.007 Sum_probs=68.1
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc-C
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK-T 164 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-~ 164 (550)
..+....+|||||.|+.+... ...||. +++|.+ ..++....+ | .|..+........+. +++.+-. .
T Consensus 187 ~eV~DL~FS~dgk~lasig~d---~~~VW~--~~~g~~~a~~t~~~k~-~-----~~~~cRF~~d~~~~~l~laa~~~~~ 255 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASIGAD---SARVWS--VNTGAALARKTPFSKD-E-----MFSSCRFSVDNAQETLRLAASQFPG 255 (398)
T ss_pred CccccceeCCCCcEEEEecCC---ceEEEE--eccCchhhhcCCcccc-h-----hhhhceecccCCCceEEEEEecCCC
Confidence 345667899999999887533 234554 455532 333321111 1 111111110001112 2333222 2
Q ss_pred CccEEEEEeCCCc----eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC-
Q 008873 165 GFRHLYLHDINGT----CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK- 239 (550)
Q Consensus 165 g~~~l~~~~~~~~----~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~- 239 (550)
+.-.++...+-.+ +.++.+...-.++... +|+||+.+++-++..+ .-||.+.- - +..++....
T Consensus 256 ~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~-VS~dGkf~AlGT~dGs---Vai~~~~~--l------q~~~~vk~aH 323 (398)
T KOG0771|consen 256 GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA-VSDDGKFLALGTMDGS---VAIYDAKS--L------QRLQYVKEAH 323 (398)
T ss_pred CceeEEEeeeeccccccchhhhhhccCcceeEE-EcCCCcEEEEeccCCc---EEEEEece--e------eeeEeehhhh
Confidence 2222222221111 3344444333455544 8999998887777443 44553321 0 111222221
Q ss_pred --ceEEEEECCCCCEEEEeec
Q 008873 240 --GKHVAVLDHNMRNFVDFHD 258 (550)
Q Consensus 240 --~~~~~~~s~dg~~l~~~~s 258 (550)
-...+.|+||.++++=+.+
T Consensus 324 ~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 324 LGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred eeeeeeEEEcCCcCccccccc
Confidence 2455689999888765433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.95 E-value=3.1 Score=38.60 Aligned_cols=218 Identities=10% Similarity=0.071 Sum_probs=103.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||..+++.... + ....+.+.-+.+......++..++.. ...|-.+++.+.+..+-+..-...-...
T Consensus 37 sl~LYd~~~g~~~~t-i-------~skkyG~~~~~Fth~~~~~i~sStk~--d~tIryLsl~dNkylRYF~GH~~~V~sL 106 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKT-I-------NSKKYGVDLACFTHHSNTVIHSSTKE--DDTIRYLSLHDNKYLRYFPGHKKRVNSL 106 (311)
T ss_pred eEEEEEcCCCceeeE-e-------ecccccccEEEEecCCceEEEccCCC--CCceEEEEeecCceEEEcCCCCceEEEE
Confidence 367889998865432 2 12233455567766666555544422 1346666666655443332111100000
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCcee---ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL---GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~---~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
..+| -.|.|+-.|. + ..|.+.|+...+- ..++. . .+..++|.| |+|....+.- ...|
T Consensus 107 --~~sP-------~~d~FlS~S~-D--~tvrLWDlR~~~cqg~l~~~~-~----pi~AfDp~G--LifA~~~~~~-~IkL 166 (311)
T KOG1446|consen 107 --SVSP-------KDDTFLSSSL-D--KTVRLWDLRVKKCQGLLNLSG-R----PIAAFDPEG--LIFALANGSE-LIKL 166 (311)
T ss_pred --EecC-------CCCeEEeccc-C--CeEEeeEecCCCCceEEecCC-C----cceeECCCC--cEEEEecCCC-eEEE
Confidence 0001 1222332221 1 2456666543221 12221 1 234588887 5555543332 4677
Q ss_pred EEEEeCCCCCCCCCCCeeeCC--CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC--CCCChhhhhc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE--QPLTVPRIKR 292 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~--~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~--~~~~~~~~~~ 292 (550)
|-+.- -++++- ..-.++. ...+....||||||+++++-.. ..++++|.=+|......+. +..+.+ + +
T Consensus 167 yD~Rs--~dkgPF-~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----s~~~~lDAf~G~~~~tfs~~~~~~~~~-~-~ 237 (311)
T KOG1446|consen 167 YDLRS--FDKGPF-TTFSITDNDEAEWTDLEFSPDGKSILLSTNA----SFIYLLDAFDGTVKSTFSGYPNAGNLP-L-S 237 (311)
T ss_pred EEecc--cCCCCc-eeEccCCCCccceeeeEEcCCCCEEEEEeCC----CcEEEEEccCCcEeeeEeeccCCCCcc-e-e
Confidence 75443 222110 1112221 2246778999999998777433 5789999888875443322 221111 1 2
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEE
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALY 316 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~ 316 (550)
..+.+-..+.+...++..|+.|-.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEc
Confidence 223222334444444445777755
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.6 Score=43.12 Aligned_cols=181 Identities=10% Similarity=-0.029 Sum_probs=87.8
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCC--eEEEEEEecCC-C--ceEEEEEECCCCce-EEEEEee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN--ILTAQVLNRSQ-T--KLKVLKFDIKTGQR-KVILVEE 132 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg--~~i~~~~~r~~-~--~~~l~~~~~~~g~~-~~l~~~~ 132 (550)
.+|+++++ |+...+.... .-....+..+.|||-| ..++++.-... . .-.|+.++..+-.. +.|....
T Consensus 152 ~sl~i~e~-t~n~~~~p~~------~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~ 224 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFK------NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS 224 (561)
T ss_pred CeEEEEec-CCccccCchh------hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec
Confidence 36788887 5544333221 1123467788999964 46666643322 2 23566766322111 2232222
Q ss_pred cC--ceeeccCccccCCCCCccCCCcEEEEE------ccCCc--cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEE
Q 008873 133 LD--SWVNLHDCFTPLDKGVTKYSGGFIWAS------EKTGF--RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQV 202 (550)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~~g~--~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l 202 (550)
+- .|- ..++-+++.. +++-| .+||++.......+..-.-.-.|.++. |.|+++.+
T Consensus 225 ~~qLkW~--------------~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~-W~p~S~~F 289 (561)
T COG5354 225 GVQLKWQ--------------VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFT-WEPLSSRF 289 (561)
T ss_pred ccEEEEe--------------cCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeee-ecccCCce
Confidence 11 221 1223233322 22224 799999876543332211122355664 99999998
Q ss_pred EEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 203 YFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 203 ~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
...+.... ..+-..++ .|+ ++-.-...--....|||.++++++..- .+....+-+.+..
T Consensus 290 ~vi~g~~p---a~~s~~~l--r~N-----l~~~~Pe~~rNT~~fsp~~r~il~agF-~nl~gni~i~~~~ 348 (561)
T COG5354 290 AVISGYMP---ASVSVFDL--RGN-----LRFYFPEQKRNTIFFSPHERYILFAGF-DNLQGNIEIFDPA 348 (561)
T ss_pred eEEecccc---cceeeccc--ccc-----eEEecCCcccccccccCcccEEEEecC-CccccceEEeccC
Confidence 88874321 22333344 332 111111112344578888887766432 2333455555653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.16 Score=52.78 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=44.8
Q ss_pred CccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCC
Q 008873 2 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT 81 (550)
Q Consensus 2 ~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 81 (550)
+|-.++.+|||||+|+=+..|. .|.+||+-++...-.-.
T Consensus 577 nritd~~FS~DgrWlisasmD~------------------------------------tIr~wDlpt~~lID~~~----- 615 (910)
T KOG1539|consen 577 NRITDMTFSPDGRWLISASMDS------------------------------------TIRTWDLPTGTLIDGLL----- 615 (910)
T ss_pred cceeeeEeCCCCcEEEEeecCC------------------------------------cEEEEeccCcceeeeEe-----
Confidence 4668899999999999887763 36889999987653211
Q ss_pred CCCCCCceeEEEEECCCCeEEEEE
Q 008873 82 DQNYDEEYLARVNWMHGNILTAQV 105 (550)
Q Consensus 82 ~~~~~~~~~~~~~wspDg~~i~~~ 105 (550)
-+....++++||.|.+++.+
T Consensus 616 ----vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 616 ----VDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred ----cCCcceeeEECCCCCEEEEE
Confidence 13345678999999999876
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.1 Score=51.99 Aligned_cols=81 Identities=16% Similarity=0.047 Sum_probs=52.0
Q ss_pred chhHhHHHHhCCcEE-----EE-ECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHH
Q 008873 351 VDMRAQYLRSKGILV-----WK-LDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGY 424 (550)
Q Consensus 351 ~~~~~~~l~~~G~~v-----v~-~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~ 424 (550)
|..+.+.|.+.||.. .+ +|.|-+.... ..+ ...+...|+.+.+.. ..+|.|+||||||.
T Consensus 67 ~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~~~--------~~~----~~~lk~~ie~~~~~~---~~kv~li~HSmGgl 131 (389)
T PF02450_consen 67 FAKLIENLEKLGYDRGKDLFAAPYDWRLSPAER--------DEY----FTKLKQLIEEAYKKN---GKKVVLIAHSMGGL 131 (389)
T ss_pred HHHHHHHHHhcCcccCCEEEEEeechhhchhhH--------HHH----HHHHHHHHHHHHHhc---CCcEEEEEeCCCch
Confidence 344678888877753 33 6888543200 011 344455555554432 57999999999999
Q ss_pred HHHHHHhhCCC------eeEEEEEcCCc
Q 008873 425 LSAITLARFPD------VFQCAVSGAPV 446 (550)
Q Consensus 425 ~a~~~~~~~~~------~~~~~v~~~~~ 446 (550)
++...+...+. .++..|.+++.
T Consensus 132 ~~~~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 132 VARYFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred HHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence 99998876632 47788877764
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.2 Score=41.22 Aligned_cols=195 Identities=11% Similarity=0.025 Sum_probs=85.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCC-CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYD-EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+..||+.+=....-.+. .+.+. ...+.+.+||+.|..|+.++...+ .-++|.++-+...-. .++.++-
T Consensus 190 ~v~~wDf~gMdas~~~fr----~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq----akl~DRdG~~~~e~~--KGDQYI~ 259 (641)
T KOG0772|consen 190 TVKFWDFQGMDASMRSFR----QLQPCETHQINSLQYSVTGDQILVVSGSAQ----AKLLDRDGFEIVEFS--KGDQYIR 259 (641)
T ss_pred eEEEEecccccccchhhh----ccCcccccccceeeecCCCCeEEEEecCcc----eeEEccCCceeeeee--ccchhhh
Confidence 467788886332210010 01122 346778899999997766654332 444555543322111 1111110
Q ss_pred c----cCccccCCCCCccCCCc---EEEEEccCCccEEEEEeCCCceeecc---c-ccCeEEEEEEeEeecCCEEEEEEc
Q 008873 139 L----HDCFTPLDKGVTKYSGG---FIWASEKTGFRHLYLHDINGTCLGPI---T-EGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 139 ~----~~~~~~~~~~~~~~~~~---~~~~s~~~g~~~l~~~~~~~~~~~~l---T-~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
+ .-+..-+..+ .|.|+. |+-.+ .+|--+||-++..-.+...+ + .|.........|++||+.|+-..
T Consensus 260 Dm~nTKGHia~lt~g-~whP~~k~~FlT~s-~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc- 336 (641)
T KOG0772|consen 260 DMYNTKGHIAELTCG-CWHPDNKEEFLTCS-YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC- 336 (641)
T ss_pred hhhccCCceeeeecc-ccccCcccceEEec-CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-
Confidence 0 0000000000 233322 44444 34666677766433332222 1 12222122345999998855333
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeC-CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLT-NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt-~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.++. .++|...- -...+.-.++.-- .+.++.+++||.||++|+ +.+. + -.|-+.|+..-+
T Consensus 337 ~DGS--IQ~W~~~~--~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SRg~-D--~tLKvWDLrq~k 397 (641)
T KOG0772|consen 337 LDGS--IQIWDKGS--RTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SRGF-D--DTLKVWDLRQFK 397 (641)
T ss_pred cCCc--eeeeecCC--cccccceEeeeccCCCCceeEEEeccccchhh-hccC-C--Cceeeeeccccc
Confidence 3332 56663211 1110000011111 122477789999999874 2221 2 256666665554
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.043 Score=48.36 Aligned_cols=85 Identities=15% Similarity=0.061 Sum_probs=52.4
Q ss_pred CcEEEEECCCCCCCCchh-hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC----C--
Q 008873 362 GILVWKLDNRGTARRGLK-FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----P-- 434 (550)
Q Consensus 362 G~~vv~~d~rG~g~~~~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~-- 434 (550)
-..|++|-||-..-.... -............+.|+.+|.++.+++.. +...++|.|||+|+.+...++-++ |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 357888888853211100 00000111123458999999998877642 346899999999999999998753 2
Q ss_pred -CeeEEEEEcCCcC
Q 008873 435 -DVFQCAVSGAPVT 447 (550)
Q Consensus 435 -~~~~~~v~~~~~~ 447 (550)
.++.|-+...+++
T Consensus 124 ~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 124 KRLVAAYLIGYPVT 137 (207)
T ss_pred hhhheeeecCcccc
Confidence 2455555555553
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.8 Score=41.81 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=68.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEE-EEECCCCCCCC---ch-hhH
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV-WKLDNRGTARR---GL-KFE 381 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~v-v~~d~rG~g~~---~~-~~~ 381 (550)
.+.++.++ +-|-+ -|-|+.|++-|.-... .| .. .-.+...|... +.-|.|--||. |. +++
T Consensus 274 ~reEi~yY-FnPGD-----~KPPL~VYFSGyR~aE----GF----Eg-y~MMk~Lg~PfLL~~DpRleGGaFYlGs~eyE 338 (511)
T TIGR03712 274 KRQEFIYY-FNPGD-----FKPPLNVYFSGYRPAE----GF----EG-YFMMKRLGAPFLLIGDPRLEGGAFYLGSDEYE 338 (511)
T ss_pred CCCeeEEe-cCCcC-----CCCCeEEeeccCcccC----cc----hh-HHHHHhcCCCeEEeeccccccceeeeCcHHHH
Confidence 45555444 34544 3559999998842221 11 10 22345667654 55588866653 21 122
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 449 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~ 449 (550)
+ -++..|+...+.=..+.+.+++.|.|||.+-|++.++.... .|+|..=|+++.
T Consensus 339 ~------------~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~P--~AIiVgKPL~NL 392 (511)
T TIGR03712 339 Q------------GIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLSP--HAIIVGKPLVNL 392 (511)
T ss_pred H------------HHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCCC--ceEEEcCcccch
Confidence 2 23444444333323578899999999999999999987532 578888887764
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.091 Score=44.64 Aligned_cols=38 Identities=21% Similarity=0.086 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC
Q 008873 395 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP 434 (550)
Q Consensus 395 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~ 434 (550)
.+...++....+. ...+|.++|||+||.+|..++....
T Consensus 13 ~i~~~~~~~~~~~--p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 13 LVLPLLKSALAQY--PDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHC--CCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444444331 3578999999999999998887653
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG2521 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1 Score=43.40 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=57.8
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
..+.+.+.+..|.++|..+-+++.+..+..|..+.-+-+.++.|..........+.+...+|++..
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhc
Confidence 357788889999999999999999999999999999999999998766677888899999999864
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=94.43 E-value=5.7 Score=44.40 Aligned_cols=102 Identities=11% Similarity=0.017 Sum_probs=53.1
Q ss_pred ccCCCc-EEEEE-c--cCC-ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCC
Q 008873 151 TKYSGG-FIWAS-E--KTG-FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW 225 (550)
Q Consensus 151 ~~~~~~-~~~~s-~--~~g-~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g 225 (550)
+|-+|| |+.+| - ..| .+.|-+++.+| +..-.++.--.......|.|.|+.|+-+....+. ..|-.+.- +|
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~--~~VvFfEr--NG 290 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSREG-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR--HDVVFFER--NG 290 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCCc-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCC--cEEEEEec--CC
Confidence 577777 33332 2 345 56777777764 3222222111112345699999988877653332 33333332 33
Q ss_pred CCCCCCCeeeCC---CCceEEEEECCCCCEEEEeecC
Q 008873 226 NHTLEAPVKLTN---GKGKHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 226 ~~~~~~~~~lt~---~~~~~~~~~s~dg~~l~~~~s~ 259 (550)
- +.++ -.|.. ........|++|+..|++...+
T Consensus 291 L-rhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 291 L-RHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred c-Eeee-EecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 2 1111 12221 1235667899999998887644
|
|
| >PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.067 Score=46.04 Aligned_cols=70 Identities=21% Similarity=0.133 Sum_probs=54.2
Q ss_pred hhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcC-CCeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHHh
Q 008873 480 VHKMK-GKLLLVHGMIDENVHFRHTARLINALVAAR-KPYEILIFPDERHM--PRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 480 ~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~-~~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+.|+ +++|-|-|+.|+++.+.|+....+.+.... .....++.|++||. |.+...+.+++..+.+|+.++
T Consensus 129 p~aI~~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 129 PAAIRRTALLTVEGERDDISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQH 202 (202)
T ss_pred hHHcccceeEEeecCcccCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHhC
Confidence 44454 688889999999999999988776654332 23456778999996 577778889999999999864
|
This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=3.4 Score=42.41 Aligned_cols=114 Identities=9% Similarity=0.085 Sum_probs=60.5
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCccE
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRH 168 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~ 168 (550)
.+...++-|+..++.++ .+..+|..+++++...+.+....... .-+.+.-+ ..+++| ++.+.. +...
T Consensus 431 a~~i~ftid~~k~~~~s---~~~~~le~~el~~ps~kel~~~~~~~---~~~~I~~l----~~SsdG~yiaa~~--t~g~ 498 (691)
T KOG2048|consen 431 ASAISFTIDKNKLFLVS---KNIFSLEEFELETPSFKELKSIQSQA---KCPSISRL----VVSSDGNYIAAIS--TRGQ 498 (691)
T ss_pred ceeeEEEecCceEEEEe---cccceeEEEEecCcchhhhhcccccc---CCCcceeE----EEcCCCCEEEEEe--ccce
Confidence 45567888888776665 23345777777777655544322110 00111111 123333 554443 4568
Q ss_pred EEEEeCCCceeeccc-ccCeEEEEEEeEee-cCCEEEEEEcCCCCceeEEEEEEe
Q 008873 169 LYLHDINGTCLGPIT-EGDWMVEQIVGVNE-ASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 169 l~~~~~~~~~~~~lT-~~~~~~~~~~~~s~-dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
|+++++++.+-+.|- .-+..+... .++| +.+.|+..... .++|..++
T Consensus 499 I~v~nl~~~~~~~l~~rln~~vTa~-~~~~~~~~~lvvats~-----nQv~efdi 547 (691)
T KOG2048|consen 499 IFVYNLETLESHLLKVRLNIDVTAA-AFSPFVRNRLVVATSN-----NQVFEFDI 547 (691)
T ss_pred EEEEEcccceeecchhccCcceeee-eccccccCcEEEEecC-----CeEEEEec
Confidence 999999988766555 223344433 3553 34455554433 36666665
|
|
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.16 Score=35.22 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCC-CCCCCCCceEEEEEcCCCCc
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDE-SRYGPPPYKTLISVYGGPCV 340 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~-~~~~~~~~P~vv~~hGg~~~ 340 (550)
+.|+..+++.||..|....+.+.. .....+++|+|++.||-..+
T Consensus 11 ~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~s 55 (63)
T PF04083_consen 11 PCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQS 55 (63)
T ss_dssp --EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--
T ss_pred CcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccC
Confidence 678999999999999888887765 22233577899999996444
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.17 Score=50.23 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc------------cccchhHhHHHHhCCcEEEEEC-CCCCCCCc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW------------INTVDMRAQYLRSKGILVWKLD-NRGTARRG 377 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~------------~~~~~~~~~~l~~~G~~vv~~d-~rG~g~~~ 377 (550)
...|.+.++.. +.+.|+++++.|||++..+.-.+ ++........+.+ .-.+|.+| .-|.|.|-
T Consensus 87 ~ffy~fe~~nd---p~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~-~adLvFiDqPvGTGfS~ 162 (498)
T COG2939 87 FFFYTFESPND---PANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLD-FADLVFIDQPVGTGFSR 162 (498)
T ss_pred EEEEEecCCCC---CCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCcccccc-CCceEEEecCcccCccc
Confidence 44455554332 25789999999999987654322 1111000111112 23578888 55666543
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHc-CCC--CCCceEEEEechhHHHHHHHHh
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLA--KVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~--d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
. .......+. ...-+|+..+.+.+.+. +.. ...+..|+|.||||+-+..+|.
T Consensus 163 a-~~~e~~~d~-~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 163 A-LGDEKKKDF-EGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred c-cccccccch-hccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHH
Confidence 2 111111111 11235555555544332 111 2247899999999998776664
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.18 E-value=6.6 Score=39.73 Aligned_cols=152 Identities=14% Similarity=0.036 Sum_probs=76.8
Q ss_pred cCCCcEEEEEccCCc-cEEEEEeCCC-ceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC
Q 008873 152 KYSGGFIWASEKTGF-RHLYLHDING-TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL 229 (550)
Q Consensus 152 ~~~~~~~~~s~~~g~-~~l~~~~~~~-~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~ 229 (550)
|++|+-.+.| +|. ..+++.|... .....++...-.|.... |+|=-..|+.++..-. .+.|..-+.. .|.
T Consensus 309 ws~d~~~lAS--GgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a-wcP~q~~lLAsGGGs~--D~~i~fwn~~-~g~--- 379 (484)
T KOG0305|consen 309 WSPDGNQLAS--GGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA-WCPWQSGLLATGGGSA--DRCIKFWNTN-TGA--- 379 (484)
T ss_pred ECCCCCeecc--CCCccceEeccCCCccccEEEeccceeeeEee-eCCCccCceEEcCCCc--ccEEEEEEcC-CCc---
Confidence 4455533333 222 3456666533 23446666666666654 8887666776655332 2444444552 232
Q ss_pred CCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCc
Q 008873 230 EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGT 309 (550)
Q Consensus 230 ~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (550)
....+..+..+.+..||+..+.|+.++..+.. ++.+....+-+.+..+...+. . .-...+.+-....+......
T Consensus 380 -~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n--~i~lw~~ps~~~~~~l~gH~~--R-Vl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 380 -RIDSVDTGSQVCSLIWSKKYKELLSTHGYSEN--QITLWKYPSMKLVAELLGHTS--R-VLYLALSPDGETIVTGAADE 453 (484)
T ss_pred -EecccccCCceeeEEEcCCCCEEEEecCCCCC--cEEEEeccccceeeeecCCcc--e-eEEEEECCCCCEEEEecccC
Confidence 23334444457778999999999888766554 444444333333344433221 1 11222323222333333334
Q ss_pred EEEEEEEcC
Q 008873 310 VLYGALYKP 318 (550)
Q Consensus 310 ~l~~~~~~P 318 (550)
+|..|-+.+
T Consensus 454 Tlrfw~~f~ 462 (484)
T KOG0305|consen 454 TLRFWNLFD 462 (484)
T ss_pred cEEeccccC
Confidence 566665544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.26 Score=45.63 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=43.1
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
.++..||||||.|.-++.= ..+|-||+|.+.+..-+...
T Consensus 94 ls~~~WSPdgrhiL~tseF-----------------------------------~lriTVWSL~t~~~~~~~~p------ 132 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSEF-----------------------------------DLRITVWSLNTQKGYLLPHP------ 132 (447)
T ss_pred ceeeeECCCcceEeeeecc-----------------------------------eeEEEEEEeccceeEEeccc------
Confidence 4678899999998765421 13567888888877655332
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRS 109 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~ 109 (550)
....-..++.|||++.+....|+
T Consensus 133 ---K~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 133 ---KTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ---ccCceeEEECCCCceeeeeeccc
Confidence 22234568999999988887664
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.02 E-value=4.8 Score=40.45 Aligned_cols=96 Identities=14% Similarity=0.197 Sum_probs=58.5
Q ss_pred ccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEE
Q 008873 166 FRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHV 243 (550)
Q Consensus 166 ~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~ 243 (550)
-..||+++.+|... .+|+. ...|.+.. |+++|+.+.+..--. |....|| ++ .+. ++ ...++| ...
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k-~GPVhdv~-W~~s~~EF~VvyGfM-PAkvtif--nl--r~~-----~v-~df~egpRN~ 316 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLK-EGPVHDVT-WSPSGREFAVVYGFM-PAKVTIF--NL--RGK-----PV-FDFPEGPRNT 316 (566)
T ss_pred cceEEEEEecCceEEEecCC-CCCceEEE-ECCCCCEEEEEEecc-cceEEEE--cC--CCC-----Ee-EeCCCCCccc
Confidence 47899999875443 35653 22345554 999999888776543 2223343 55 442 22 222223 455
Q ss_pred EEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 244 ~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+.|+|.|..+++.. =.+-+.++-+.|..+.+
T Consensus 317 ~~fnp~g~ii~lAG-FGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 317 AFFNPHGNIILLAG-FGNLPGDMEVWDVPNRK 347 (566)
T ss_pred eEECCCCCEEEEee-cCCCCCceEEEeccchh
Confidence 67999998776554 33577888888876644
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.12 Score=43.11 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-------CCeeEEEEEcCCcC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-------PDVFQCAVSGAPVT 447 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-------~~~~~~~v~~~~~~ 447 (550)
...+...++.+.++.. ..+|.+.|||+||.+|..++... +..+++....+|..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4456666666665542 37899999999999998877641 14566666666644
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.85 E-value=7.3 Score=39.24 Aligned_cols=138 Identities=12% Similarity=0.106 Sum_probs=77.2
Q ss_pred EEEEECCCCe-EEEEEE-ecCC------CceEEEEEECCCCceE-EEEEeecCceeeccCccccCCCCCccCCCc--EEE
Q 008873 91 ARVNWMHGNI-LTAQVL-NRSQ------TKLKVLKFDIKTGQRK-VILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIW 159 (550)
Q Consensus 91 ~~~~wspDg~-~i~~~~-~r~~------~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 159 (550)
....|.+-|. +|+..+ +-+. +...||++++++-+++ .|.. .++. ... .|++.+ |..
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPV-------hdv-----~W~~s~~EF~V 287 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPV-------HDV-----TWSPSGREFAV 287 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCc-------eEE-----EECCCCCEEEE
Confidence 4568999998 444332 2221 2567999999843333 2221 2221 111 234433 544
Q ss_pred EEccCCc--cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 160 ASEKTGF--RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 160 ~s~~~g~--~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
+- |+ .-+-++|+++.-.-.+-.|..+ -..|+|-|+.|++.+-.+-++...+|-|.- -++++.
T Consensus 288 vy---GfMPAkvtifnlr~~~v~df~egpRN---~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n----------~K~i~~ 351 (566)
T KOG2315|consen 288 VY---GFMPAKVTIFNLRGKPVFDFPEGPRN---TAFFNPHGNIILLAGFGNLPGDMEVWDVPN----------RKLIAK 351 (566)
T ss_pred EE---ecccceEEEEcCCCCEeEeCCCCCcc---ceEECCCCCEEEEeecCCCCCceEEEeccc----------hhhccc
Confidence 32 43 3455677766544444445443 235999999999988776666677774431 123332
Q ss_pred C--CceEEEEECCCCCEEEEee
Q 008873 238 G--KGKHVAVLDHNMRNFVDFH 257 (550)
Q Consensus 238 ~--~~~~~~~~s~dg~~l~~~~ 257 (550)
. .+...+.|+|||++|+-..
T Consensus 352 ~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 352 FKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred cccCCceEEEEcCCCcEEEEEe
Confidence 2 2345568999999886543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.5 Score=41.83 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=25.9
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEE
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQV 105 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~ 105 (550)
..-||.+|..+.+..++..- . ..++....||+|++++...
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~-------~-gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKC-------S-GSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred eEEEEEECCCCcEEEEeeee-------c-CceeEEeeecCCCceEEec
Confidence 34566667776665555331 1 1578889999999977544
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.37 E-value=6.1 Score=35.97 Aligned_cols=196 Identities=13% Similarity=0.049 Sum_probs=95.4
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE-EEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g 165 (550)
+..++++.+.-+|.+|+.+.+.. ..+-+|.. .|+.- ..--+.+..|.-+- .|+.+.++--| +
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~-~~~vw~s~---nGerlGty~GHtGavW~~Di----------d~~s~~liTGS---A 72 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDS-TPTVWYSL---NGERLGTYDGHTGAVWCCDI----------DWDSKHLITGS---A 72 (327)
T ss_pred ccccceEEecCCCcEEEEecCCC-CceEEEec---CCceeeeecCCCceEEEEEe----------cCCcceeeecc---c
Confidence 45567788888998876665443 23333332 23311 11112223343210 12333233211 1
Q ss_pred ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC-CCC-CeeeC-CCCceE
Q 008873 166 FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT-LEA-PVKLT-NGKGKH 242 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~-~~~-~~~lt-~~~~~~ 242 (550)
-..+-+.|.++|+....-.-+-.|... .++.+|+.+.++....-.....|...++..+.... ..+ ...++ ...-..
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk~~-~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVKRV-DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeEEE-eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 233344454555432222222234433 48899998888877533223333333442122100 012 22333 333466
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcC
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQAN 306 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (550)
++.|+|-++.|+.-..+ ..|..+|+.+|.+...- .......++..++.+-.-..+++.
T Consensus 152 ~a~Wg~l~~~ii~Ghe~----G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHED----GSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred eeeecccCCEEEEecCC----CcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecc
Confidence 67899999998877655 47888898888643221 112223566666655555555544
|
|
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.15 Score=48.16 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=78.5
Q ss_pred HHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc--------cccchhhhhccCCCC-
Q 008873 396 QLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD--------GYDTFYTEKYMGLPS- 465 (550)
Q Consensus 396 ~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~g~~~- 465 (550)
+..|++-..++ ..+.-++..|.|-|--|..++..|...|+.++-+-...-+.+.. .|..-|...+.....
T Consensus 217 ~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~pyyae 296 (507)
T COG4287 217 VSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPYYAE 296 (507)
T ss_pred HHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcchhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccchhHhh
Confidence 34444444332 33556789999999999999999987776543322222222211 111111110000000
Q ss_pred ------CCc---cccccCChhhhh-----hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 466 ------EDP---VGYEYSSVMHHV-----HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 466 ------~~~---~~~~~~~~~~~~-----~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
+++ ....-.+|+.+. .++..|-.|+.|..|+..++..+.-+++.| .....+...|+..|..
T Consensus 297 gi~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~L---PG~kaLrmvPN~~H~~ 371 (507)
T COG4287 297 GIDERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDL---PGEKALRMVPNDPHNL 371 (507)
T ss_pred hHHHhhcCHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccC---CCceeeeeCCCCcchh
Confidence 011 112223455544 667789999999999999999999998877 3456788899999986
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=9 Score=37.61 Aligned_cols=160 Identities=10% Similarity=0.088 Sum_probs=87.4
Q ss_pred CceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEEee-cCceeeccCccccCCCCCccCCCcEEEEEccC
Q 008873 87 EEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 164 (550)
...+..+.++|... .++..+-.+ -|-..|.+++....+.... +..|+. -++.. ..+..+++.+.-
T Consensus 234 s~~Vs~l~F~P~n~s~i~ssSyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs------~~d~~---~e~~~vl~~~~~ 300 (498)
T KOG4328|consen 234 SGPVSGLKFSPANTSQIYSSSYDG----TIRLQDFEGNISEEVLSLDTDNIWFS------SLDFS---AESRSVLFGDNV 300 (498)
T ss_pred CccccceEecCCChhheeeeccCc----eeeeeeecchhhHHHhhcCccceeee------ecccc---CCCccEEEeecc
Confidence 45677888999776 444444333 2667788877655444432 223432 22111 123344444454
Q ss_pred CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC---ce
Q 008873 165 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK---GK 241 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~---~~ 241 (550)
|+.+++-...++.+...++-.+--+.... ..|-..+++.++..++. ..||-+.-- .++ ..| .|..-+ -+
T Consensus 301 G~f~~iD~R~~~s~~~~~~lh~kKI~sv~-~NP~~p~~laT~s~D~T--~kIWD~R~l-~~K---~sp-~lst~~HrrsV 372 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYENLRLHKKKITSVA-LNPVCPWFLATASLDQT--AKIWDLRQL-RGK---ASP-FLSTLPHRRSV 372 (498)
T ss_pred cceEEEEeecCCccchhhhhhhcccceee-cCCCCchheeecccCcc--eeeeehhhh-cCC---CCc-ceeccccccee
Confidence 56566666566665555655544455444 77887788777776653 457733310 221 112 233222 26
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
+++.|||++..|+-++.+ .+|.++|.
T Consensus 373 ~sAyFSPs~gtl~TT~~D----~~IRv~ds 398 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQD----NEIRVFDS 398 (498)
T ss_pred eeeEEcCCCCceEeeccC----CceEEeec
Confidence 667899999887776654 25555554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=16 Score=40.48 Aligned_cols=180 Identities=10% Similarity=0.025 Sum_probs=85.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECC-CCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wsp-Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.+||+.+++.... + ..-...+..++|+| |+.+++...... .|.+.++.+++...........+.
T Consensus 556 ~v~lWd~~~~~~~~~-~-------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg----~v~iWd~~~~~~~~~~~~~~~v~~- 622 (793)
T PLN00181 556 VVQVWDVARSQLVTE-M-------KEHEKRVWSIDYSSADPTLLASGSDDG----SVKLWSINQGVSIGTIKTKANICC- 622 (793)
T ss_pred eEEEEECCCCeEEEE-e-------cCCCCCEEEEEEcCCCCCEEEEEcCCC----EEEEEECCCCcEEEEEecCCCeEE-
Confidence 577889998765332 1 12245688899997 777776664332 366667777664322221111110
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCce--eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTC--LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~--~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
..+. ++++ ++.....+| .|+++|....+ ...+....-.+.... |. +++.|+ ++..++ ...
T Consensus 623 ----v~~~------~~~g~~latgs~dg--~I~iwD~~~~~~~~~~~~~h~~~V~~v~-f~-~~~~lv-s~s~D~--~ik 685 (793)
T PLN00181 623 ----VQFP------SESGRSLAFGSADH--KVYYYDLRNPKLPLCTMIGHSKTVSYVR-FV-DSSTLV-SSSTDN--TLK 685 (793)
T ss_pred ----EEEe------CCCCCEEEEEeCCC--eEEEEECCCCCccceEecCCCCCEEEEE-Ee-CCCEEE-EEECCC--EEE
Confidence 0110 1222 444443344 67777765432 222332332344443 65 565554 444433 256
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
||.+.....+. .......+.... ....+.+++++++|+....+ ..+.+++....
T Consensus 686 iWd~~~~~~~~-~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D----~~v~iw~~~~~ 740 (793)
T PLN00181 686 LWDLSMSISGI-NETPLHSFMGHTNVKNFVGLSVSDGYIATGSET----NEVFVYHKAFP 740 (793)
T ss_pred EEeCCCCcccc-CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC----CEEEEEECCCC
Confidence 66443200000 000122333221 23456789998866443322 36777665433
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.21 E-value=3.8 Score=40.98 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=24.1
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT 122 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~ 122 (550)
......+..++|.|+...++|+... +++.-+++-
T Consensus 142 ~Q~~~~v~c~~W~p~S~~vl~c~g~-----h~~IKpL~~ 175 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNSIVFCQGG-----HISIKPLAA 175 (737)
T ss_pred hhcCceeEEEEECCCCCceEEecCC-----eEEEeeccc
Confidence 4556778889999999988887422 366655543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.3 Score=40.91 Aligned_cols=52 Identities=21% Similarity=0.170 Sum_probs=35.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+-|||||+.||++..+ ...||++++|...+-..+ .
T Consensus 190 ~DL~FS~dgk~lasig~d-------------------------------------~~~VW~~~~g~~~a~~t~------~ 226 (398)
T KOG0771|consen 190 KDLDFSPDGKFLASIGAD-------------------------------------SARVWSVNTGAALARKTP------F 226 (398)
T ss_pred ccceeCCCCcEEEEecCC-------------------------------------ceEEEEeccCchhhhcCC------c
Confidence 467799999999998554 246788888843221111 3
Q ss_pred CCCceeEEEEECCCC
Q 008873 85 YDEEYLARVNWMHGN 99 (550)
Q Consensus 85 ~~~~~~~~~~wspDg 99 (550)
+.++.+...+|+-|+
T Consensus 227 ~k~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDN 241 (398)
T ss_pred ccchhhhhceecccC
Confidence 445666777888887
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.08 E-value=7.3 Score=36.07 Aligned_cols=165 Identities=16% Similarity=0.095 Sum_probs=82.1
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
..|++|+..+-..-...+ ..-..-+..+.|.+|+..|+.+.... .|+.-|+++|++.+-..... .+.+
T Consensus 69 r~I~LWnv~gdceN~~~l-------kgHsgAVM~l~~~~d~s~i~S~gtDk----~v~~wD~~tG~~~rk~k~h~-~~vN 136 (338)
T KOG0265|consen 69 RAIVLWNVYGDCENFWVL-------KGHSGAVMELHGMRDGSHILSCGTDK----TVRGWDAETGKRIRKHKGHT-SFVN 136 (338)
T ss_pred ceEEEEeccccccceeee-------ccccceeEeeeeccCCCEEEEecCCc----eEEEEecccceeeehhcccc-ceee
Confidence 356777765532211111 22245677889999999887765332 48899999998765443211 2222
Q ss_pred ccCccccCCCCCccCCCcEEEEEc-cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
. ..|. .-+-.++.|- .+| .+-++|...++..++-..+++...+. |..++..+.-..-.+. .++|
T Consensus 137 s---~~p~------rrg~~lv~SgsdD~--t~kl~D~R~k~~~~t~~~kyqltAv~-f~d~s~qv~sggIdn~---ikvW 201 (338)
T KOG0265|consen 137 S---LDPS------RRGPQLVCSGSDDG--TLKLWDIRKKEAIKTFENKYQLTAVG-FKDTSDQVISGGIDND---IKVW 201 (338)
T ss_pred e---cCcc------ccCCeEEEecCCCc--eEEEEeecccchhhccccceeEEEEE-ecccccceeeccccCc---eeee
Confidence 1 1111 1111333332 233 45566655544444444466666654 7767665553333322 3444
Q ss_pred EEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEee
Q 008873 218 CAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFH 257 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~ 257 (550)
...- +++ .-.++.. +-+...+.|++|.++.-..
T Consensus 202 d~r~-~d~------~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 202 DLRK-NDG------LYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred cccc-Ccc------eEEeecccCceeeEEeccCCCcccccc
Confidence 2211 011 0111111 1245567788887764433
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.07 E-value=9.6 Score=37.36 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=72.7
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCc-eeEEEEECCCCeE--EEEEEecCC--CceEEEEEECCCCceEEEEEeec
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEE-YLARVNWMHGNIL--TAQVLNRSQ--TKLKVLKFDIKTGQRKVILVEEL 133 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~wspDg~~--i~~~~~r~~--~~~~l~~~~~~~g~~~~l~~~~~ 133 (550)
.-|++|||+++....+..+ ....- ....+.+ +|+. |+..++|.. +.-.||.++.++|..+.++....
T Consensus 78 ~GL~VYdL~Gk~lq~~~~G------r~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~ 149 (381)
T PF02333_consen 78 GGLYVYDLDGKELQSLPVG------RPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAA 149 (381)
T ss_dssp TEEEEEETTS-EEEEE-SS-------EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC
T ss_pred CCEEEEcCCCcEEEeecCC------Ccceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCc
Confidence 3599999999988877442 11010 1122233 5663 667788864 45689999998887655542111
Q ss_pred CceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC-c-----eeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 134 DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-T-----CLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~-~-----~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
+.-......+..+-.....++.-++|++.++|.-+.|.+..++ + ..|.+.-+. ++.... .+.....||+. .
T Consensus 150 p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCV-VDDe~g~LYvg-E 226 (381)
T PF02333_consen 150 PIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCV-VDDETGRLYVG-E 226 (381)
T ss_dssp -EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEE-EETTTTEEEEE-E
T ss_pred ccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEE-EecccCCEEEe-c
Confidence 1000000001111000001122267778888866666665332 2 234443322 445544 66666677765 3
Q ss_pred CCCCceeEEEEEEeCCC
Q 008873 208 LDGPLESHLYCAKLYPD 224 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~ 224 (550)
++ ..||+++....
T Consensus 227 E~----~GIW~y~Aep~ 239 (381)
T PF02333_consen 227 ED----VGIWRYDAEPE 239 (381)
T ss_dssp TT----TEEEEEESSCC
T ss_pred Cc----cEEEEEecCCC
Confidence 32 47888887433
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=7.3 Score=35.95 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=85.7
Q ss_pred EEEEEccCCccEEEEEeCCCce-eecccc-cCeEEEEEEeEeecCCEEEEEEcCCC--CceeEEEEEEeCCCCCCCCCCC
Q 008873 157 FIWASEKTGFRHLYLHDINGTC-LGPITE-GDWMVEQIVGVNEASGQVYFTGTLDG--PLESHLYCAKLYPDWNHTLEAP 232 (550)
Q Consensus 157 ~~~~s~~~g~~~l~~~~~~~~~-~~~lT~-~~~~~~~~~~~s~dg~~l~f~~~~~~--~~~~~l~~v~~~~~g~~~~~~~ 232 (550)
-+++..+.|. .-+++|.++.+ +..+++ .+.+...--.+|+||.+||-+-|.-+ .+-..||.++- +- .++
T Consensus 82 avafARrPGt-f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~---~f---qrv 154 (366)
T COG3490 82 AVAFARRPGT-FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE---GF---QRV 154 (366)
T ss_pred eEEEEecCCc-eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc---cc---cee
Confidence 3444455552 24566766643 333333 23333333458999999998887543 33456675542 11 012
Q ss_pred eeeC-CCCceEEEEECCCCCEEEEeecCCC-C-------------CCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCC
Q 008873 233 VKLT-NGKGKHVAVLDHNMRNFVDFHDSLD-S-------------PPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 297 (550)
Q Consensus 233 ~~lt-~~~~~~~~~~s~dg~~l~~~~s~~~-~-------------p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 297 (550)
-+++ .+-|-|.+.+.+||+.++..-.... . -|.+.+++..+|..+... .+.+.+ ....
T Consensus 155 gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh----~Lp~~l---~~lS 227 (366)
T COG3490 155 GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH----TLPASL---RQLS 227 (366)
T ss_pred cccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc----cCchhh---hhcc
Confidence 2222 2335688899999999877544221 1 256777776677643221 122222 2223
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYG 336 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hG 336 (550)
.+.+.+ ..||+.+.+.-|.-+. ..+|.+|-.|-
T Consensus 228 iRHld~-g~dgtvwfgcQy~G~~-----~d~ppLvg~~~ 260 (366)
T COG3490 228 IRHLDI-GRDGTVWFGCQYRGPR-----NDLPPLVGHFR 260 (366)
T ss_pred eeeeee-CCCCcEEEEEEeeCCC-----ccCCcceeecc
Confidence 344444 3588888887775433 24566665544
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=7.6 Score=35.84 Aligned_cols=236 Identities=12% Similarity=0.068 Sum_probs=118.7
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC-CceEEEEcccCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GPVSWMDLQCGGTD 82 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~ 82 (550)
-.++-||+|+|+|+=.+.|. .|.|||.-| .|...+++.
T Consensus 58 i~~~~ws~Dsr~ivSaSqDG------------------------------------klIvWDs~TtnK~haipl~----- 96 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDG------------------------------------KLIVWDSFTTNKVHAIPLP----- 96 (343)
T ss_pred eeeeEecCCcCeEEeeccCC------------------------------------eEEEEEcccccceeEEecC-----
Confidence 35788999999998765552 467888876 466666553
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC--CCceEEEEEeec-CceeeccCccccCCCCCccCCCcEEE
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TGQRKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGGFIW 159 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~--~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (550)
..-+..-++||.|..++-- .-.+.--||.+..+ .|..+.-....+ .+++.. -.+ .+|.-+.
T Consensus 97 ----s~WVMtCA~sPSg~~VAcG--GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylSc---C~f-------~dD~~il 160 (343)
T KOG0286|consen 97 ----SSWVMTCAYSPSGNFVACG--GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSC---CRF-------LDDNHIL 160 (343)
T ss_pred ----ceeEEEEEECCCCCeEEec--CcCceeEEEecccccccccceeeeeecCccceeEE---EEE-------cCCCceE
Confidence 2234456899999977543 22233446666543 222221111111 122111 011 1233333
Q ss_pred EEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEee-cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 160 ASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNE-ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 160 ~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~-dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
.+ +|-....+.|.++++.. .+..+..+|-.. .++| +++ .++++.-+. ...||-+.- +. -.+.+..
T Consensus 161 T~--SGD~TCalWDie~g~~~~~f~GH~gDV~sl-sl~p~~~n-tFvSg~cD~--~aklWD~R~---~~----c~qtF~g 227 (343)
T KOG0286|consen 161 TG--SGDMTCALWDIETGQQTQVFHGHTGDVMSL-SLSPSDGN-TFVSGGCDK--SAKLWDVRS---GQ----CVQTFEG 227 (343)
T ss_pred ec--CCCceEEEEEcccceEEEEecCCcccEEEE-ecCCCCCC-eEEeccccc--ceeeeeccC---cc----eeEeecc
Confidence 32 35556667777776543 333334455444 3677 655 444544443 256663332 21 1122221
Q ss_pred C-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEE
Q 008873 238 G-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGA 314 (550)
Q Consensus 238 ~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 314 (550)
. ..+.++.|=|+|..++ +.| ......++|+.....+...... .....+....+...-++-|-.-+......|
T Consensus 228 hesDINsv~ffP~G~afa-tGS---DD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAFA-TGS---DDATCRLYDLRADQELAVYSHD-SIICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred cccccceEEEccCCCeee-ecC---CCceeEEEeecCCcEEeeeccC-cccCCceeEEEcccccEEEeeecCCceeEe
Confidence 1 2366778889996553 222 2235666777766655444332 222344455555555555544344444444
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=92.89 E-value=5.8 Score=36.53 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=41.6
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD 82 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 82 (550)
|-..+-|-||+++||-+..+ .|.+++++.++.+.-.+.+..
T Consensus 125 ~i~cvew~Pns~klasm~dn-------------------------------------~i~l~~l~ess~~vaev~ss~-- 165 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDN-------------------------------------NIVLWSLDESSKIVAEVLSSE-- 165 (370)
T ss_pred ceeeEEEcCCCCeeEEeccC-------------------------------------ceEEEEcccCcchheeecccc--
Confidence 55788999999999886421 356778887655322121110
Q ss_pred CCCCCceeEEEEECC--CCeEEEEEEec
Q 008873 83 QNYDEEYLARVNWMH--GNILTAQVLNR 108 (550)
Q Consensus 83 ~~~~~~~~~~~~wsp--Dg~~i~~~~~r 108 (550)
-......+++-+||| ||..++...++
T Consensus 166 s~e~~~~ftsg~WspHHdgnqv~tt~d~ 193 (370)
T KOG1007|consen 166 SAEMRHSFTSGAWSPHHDGNQVATTSDS 193 (370)
T ss_pred cccccceecccccCCCCccceEEEeCCC
Confidence 022244667789999 88877766544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=92.84 E-value=9 Score=36.47 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=65.2
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-e-ecCceee
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-E-ELDSWVN 138 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~-~~~~~~~ 138 (550)
-++|++.+|+.. ..+ +.-...+....||.||.+|+.---.. .|.+....+|..+.-.. + .+-.|..
T Consensus 88 AflW~~~~ge~~-~el-------tgHKDSVt~~~FshdgtlLATGdmsG----~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 88 AFLWDISTGEFA-GEL-------TGHKDSVTCCSFSHDGTLLATGDMSG----KVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred EEEEEccCCcce-eEe-------cCCCCceEEEEEccCceEEEecCCCc----cEEEEEcccCceEEEeecccCceEEEE
Confidence 478888888732 222 34455788999999999987653222 25555566665543332 2 2225652
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCC-ceeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDING-TCLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~-~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
|.|.. +++.-..+| .+|++.+.. +..+.+...+-.+.. --+.||||++.-.+.
T Consensus 156 -------------WHp~a~illAG~~DG--svWmw~ip~~~~~kv~~Gh~~~ct~-G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 156 -------------WHPRAHILLAGSTDG--SVWMWQIPSQALCKVMSGHNSPCTC-GEFIPDGKRILTGYD 210 (399)
T ss_pred -------------ecccccEEEeecCCC--cEEEEECCCcceeeEecCCCCCccc-ccccCCCceEEEEec
Confidence 44543 555555556 456666544 333333322222221 136789987765554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.77 E-value=11 Score=39.02 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=82.8
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccC
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 164 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 164 (550)
.....+...+-||||.+|+...-. ++.||.+..+. ..+...-...+...-....+.+ ..+.+.+++.+..
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~~---~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~f-----tid~~k~~~~s~~- 449 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTVS---RTKIYRLQPDP-NVKVINVDDVPLALLDASAISF-----TIDKNKLFLVSKN- 449 (691)
T ss_pred CCccceeeeccCCCCCEEEEeecc---ceEEEEeccCc-ceeEEEeccchhhhccceeeEE-----EecCceEEEEecc-
Confidence 345567778899999998876422 34599998877 4433332221111100011122 1234445555522
Q ss_pred CccEEEEEeCCCc---eeeccccc-C-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-
Q 008873 165 GFRHLYLHDINGT---CLGPITEG-D-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG- 238 (550)
Q Consensus 165 g~~~l~~~~~~~~---~~~~lT~~-~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~- 238 (550)
...|..+++++. +...+++. . -.+... ..|+||++|+..+.. ..|+..++. +. +-..|...
T Consensus 450 -~~~le~~el~~ps~kel~~~~~~~~~~~I~~l-~~SsdG~yiaa~~t~-----g~I~v~nl~--~~----~~~~l~~rl 516 (691)
T KOG2048|consen 450 -IFSLEEFELETPSFKELKSIQSQAKCPSISRL-VVSSDGNYIAAISTR-----GQIFVYNLE--TL----ESHLLKVRL 516 (691)
T ss_pred -cceeEEEEecCcchhhhhccccccCCCcceeE-EEcCCCCEEEEEecc-----ceEEEEEcc--cc----eeecchhcc
Confidence 234455554442 23333332 1 122333 489999999988754 356666772 21 22222211
Q ss_pred -CceEEEEEC-CCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 239 -KGKHVAVLD-HNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 239 -~~~~~~~~s-~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.......++ ++-..++...++ .+++-++++
T Consensus 517 n~~vTa~~~~~~~~~~lvvats~----nQv~efdi~ 548 (691)
T KOG2048|consen 517 NIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIE 548 (691)
T ss_pred CcceeeeeccccccCcEEEEecC----CeEEEEecc
Confidence 123444566 344566666554 378888873
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.35 E-value=9.4 Score=35.50 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=56.2
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCC-----CCCCCcccccCCCCCC----CCCeEEEEEE--ECCCCc--
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSS-----VGSEAQEDHAYPFAGA----SNVKVRLGVV--SAAGGP-- 70 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~y~~~g~----~~~~~~l~~~--d~~~~~-- 70 (550)
.+++.|+||.+.| |+..+.. ....++...|+-- ..-.+++.|.|--.|. +.-...|+++ |.++..
T Consensus 88 vS~LTynp~~rtL-Fav~n~p-~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 88 VSSLTYNPDTRTL-FAVTNKP-AAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccceeeCCCcceE-EEecCCC-ceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 5788999999988 5545432 1122221111110 0123455566644443 1222345544 444322
Q ss_pred --eEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEE
Q 008873 71 --VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119 (550)
Q Consensus 71 --~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~ 119 (550)
..+++++.. ...+..+-..+|+|....+++...|. ...||.++
T Consensus 166 ~~~~~i~L~~~----~k~N~GfEGlA~d~~~~~l~~aKEr~--P~~I~~~~ 210 (316)
T COG3204 166 AKVQKIPLGTT----NKKNKGFEGLAWDPVDHRLFVAKERN--PIGIFEVT 210 (316)
T ss_pred ccceEEecccc----CCCCcCceeeecCCCCceEEEEEccC--CcEEEEEe
Confidence 124444321 12255667789999999888877664 44678776
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=92.28 E-value=9.2 Score=35.24 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=42.1
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
.+++.|.||.+.|+.+ .|+. ..|+.+++++.-.+++.+.
T Consensus 24 ~SGLTy~pd~~tLfaV-~d~~----------------------------------~~i~els~~G~vlr~i~l~------ 62 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAV-QDEP----------------------------------GEIYELSLDGKVLRRIPLD------ 62 (248)
T ss_dssp EEEEEEETTTTEEEEE-ETTT----------------------------------TEEEEEETT--EEEEEE-S------
T ss_pred ccccEEcCCCCeEEEE-ECCC----------------------------------CEEEEEcCCCCEEEEEeCC------
Confidence 4789999999998665 4321 2467888886666777663
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEEC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 120 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~ 120 (550)
. ..-.-.+++..+|++++ ...|.+ .|+.+++
T Consensus 63 -g-~~D~EgI~y~g~~~~vl-~~Er~~---~L~~~~~ 93 (248)
T PF06977_consen 63 -G-FGDYEGITYLGNGRYVL-SEERDQ---RLYIFTI 93 (248)
T ss_dssp -S--SSEEEEEE-STTEEEE-EETTTT---EEEEEEE
T ss_pred -C-CCCceeEEEECCCEEEE-EEcCCC---cEEEEEE
Confidence 1 22344578888887554 445543 4666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.24 E-value=3.1 Score=41.15 Aligned_cols=90 Identities=6% Similarity=-0.077 Sum_probs=54.6
Q ss_pred ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEE
Q 008873 166 FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAV 245 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~ 245 (550)
..++++....+.+.-+|+..+--|-.. -+++.|++++-++.++- .+.|+.+. |. .+-+..+..-..++.
T Consensus 613 ns~vevlh~skp~kyqlhlheScVLSl-KFa~cGkwfvStGkDnl---LnawrtPy---Ga----siFqskE~SsVlsCD 681 (705)
T KOG0639|consen 613 NSNVEVLHTSKPEKYQLHLHESCVLSL-KFAYCGKWFVSTGKDNL---LNAWRTPY---GA----SIFQSKESSSVLSCD 681 (705)
T ss_pred cCcEEEEecCCccceeecccccEEEEE-EecccCceeeecCchhh---hhhccCcc---cc----ceeeccccCcceeee
Confidence 346777777677777888776555554 48899988775554432 56777665 22 233444333467788
Q ss_pred ECCCCCEEEEeecCCCCCCEEEE
Q 008873 246 LDHNMRNFVDFHDSLDSPPRILL 268 (550)
Q Consensus 246 ~s~dg~~l~~~~s~~~~p~~l~~ 268 (550)
+|.|.++|| +.|+ ..-..+|-
T Consensus 682 IS~ddkyIV-TGSG-dkkATVYe 702 (705)
T KOG0639|consen 682 ISFDDKYIV-TGSG-DKKATVYE 702 (705)
T ss_pred eccCceEEE-ecCC-CcceEEEE
Confidence 999987654 4443 22334443
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.27 Score=45.05 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-----CCeeEEEEEcCCcC
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-----PDVFQCAVSGAPVT 447 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-----~~~~~~~v~~~~~~ 447 (550)
.++...+..+.++. ...+|.+.|||+||.+|..++... +..+.+....+|..
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 44555555554442 346899999999999998877642 33456666566543
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.3 Score=41.20 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=47.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHh--CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~--~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
.+.|+|| .||-+.+-. +. ..+....+++.+ -|..|.+++. |.+...+ -......+ +.++++.+...
T Consensus 4 ~~~PvVi-wHGmGD~~~--~~--~~m~~i~~~i~~~~PG~yV~si~i-g~~~~~D-~~~s~f~~-----v~~Qv~~vc~~ 71 (279)
T PF02089_consen 4 SPLPVVI-WHGMGDSCC--NP--SSMGSIKELIEEQHPGTYVHSIEI-GNDPSED-VENSFFGN-----VNDQVEQVCEQ 71 (279)
T ss_dssp SS--EEE-E--TT--S----T--TTHHHHHHHHHHHSTT--EEE--S-SSSHHHH-HHHHHHSH-----HHHHHHHHHHH
T ss_pred CCCcEEE-EEcCccccC--Ch--hHHHHHHHHHHHhCCCceEEEEEE-CCCcchh-hhhhHHHH-----HHHHHHHHHHH
Confidence 4567766 699432211 00 022323333333 3788888876 3321111 11111121 45555544444
Q ss_pred HH-cCCCCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCC
Q 008873 404 IK-QGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAP 445 (550)
Q Consensus 404 ~~-~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~ 445 (550)
++ .+.+. +-+-++|+|.||.+.-.++.+.++ .++-.|+.++
T Consensus 72 l~~~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 72 LANDPELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp HHH-GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred HhhChhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 43 33333 468899999999999888887653 4677777554
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.00 E-value=9.8 Score=34.92 Aligned_cols=168 Identities=11% Similarity=0.094 Sum_probs=87.1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC-cEEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~ 163 (550)
.-.+.+..+..|+||.+++..+ ++. .|.+-|+++|+.++.+......-.. . +.++| .-+....+
T Consensus 61 GHsH~v~dv~~s~dg~~alS~s-wD~---~lrlWDl~~g~~t~~f~GH~~dVls----v-------a~s~dn~qivSGSr 125 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFALSAS-WDG---TLRLWDLATGESTRRFVGHTKDVLS----V-------AFSTDNRQIVSGSR 125 (315)
T ss_pred ccceEecceEEccCCceEEecc-ccc---eEEEEEecCCcEEEEEEecCCceEE----E-------EecCCCceeecCCC
Confidence 3456788899999999776554 322 2666788999887766532211000 0 11222 12222111
Q ss_pred CCccEEEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCe-eeCCCCc-
Q 008873 164 TGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPV-KLTNGKG- 240 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~-~lt~~~~- 240 (550)
+ ..|-+++.-|...-.++++. .+...-..|+|.....++.+...+. ...+| ++ .+- +.+ ......+
T Consensus 126 D--kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-tvKvW--nl--~~~----~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 126 D--KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK-TVKVW--NL--RNC----QLRTTFIGHSGY 194 (315)
T ss_pred c--ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc-eEEEE--cc--CCc----chhhcccccccc
Confidence 1 23445554454443444432 2222334588886444444443221 25555 44 211 111 1111223
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
...+.+||||...+. .....++++.|+..++.+..+..
T Consensus 195 v~t~~vSpDGslcas----Ggkdg~~~LwdL~~~k~lysl~a 232 (315)
T KOG0279|consen 195 VNTVTVSPDGSLCAS----GGKDGEAMLWDLNEGKNLYSLEA 232 (315)
T ss_pred EEEEEECCCCCEEec----CCCCceEEEEEccCCceeEeccC
Confidence 344589999986543 34556899999988876555443
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.29 Score=48.06 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
.+++...++.+.++..-..-+|.+.|||+||.+|+.+|..
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 4556777777776532122359999999999999988753
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.75 E-value=8.9 Score=36.57 Aligned_cols=138 Identities=13% Similarity=0.058 Sum_probs=75.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~ 138 (550)
+||++|+.+=+.-. ++..- .+....+...+.++++-++++=..+. ..+|++.|+.+-+...... ++++- .
T Consensus 107 ~IyIydI~~MklLh-TI~t~----~~n~~gl~AlS~n~~n~ylAyp~s~t--~GdV~l~d~~nl~~v~~I~aH~~~l--A 177 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLH-TIETT----PPNPKGLCALSPNNANCYLAYPGSTT--SGDVVLFDTINLQPVNTINAHKGPL--A 177 (391)
T ss_pred cEEEEecccceeeh-hhhcc----CCCccceEeeccCCCCceEEecCCCC--CceEEEEEcccceeeeEEEecCCce--e
Confidence 58889988754321 22110 12334456566666666887764443 4578888888765443322 22221 0
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEE--EEEEeEeecCCEEEEEEcCCCCcee
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMV--EQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~--~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
.+. .+++| ++-.|+++-.-++|.+ .+|.+...+=+|-.-+ .+. .+++|++.|..+++.+. .
T Consensus 178 ---ala-------fs~~G~llATASeKGTVIRVf~v-~~G~kl~eFRRG~~~~~IySL-~Fs~ds~~L~~sS~TeT---V 242 (391)
T KOG2110|consen 178 ---ALA-------FSPDGTLLATASEKGTVIRVFSV-PEGQKLYEFRRGTYPVSIYSL-SFSPDSQFLAASSNTET---V 242 (391)
T ss_pred ---EEE-------ECCCCCEEEEeccCceEEEEEEc-CCccEeeeeeCCceeeEEEEE-EECCCCCeEEEecCCCe---E
Confidence 111 24444 4445555333344444 3454454555554432 333 58999998888777654 7
Q ss_pred EEEEEEe
Q 008873 215 HLYCAKL 221 (550)
Q Consensus 215 ~l~~v~~ 221 (550)
|+|+++.
T Consensus 243 HiFKL~~ 249 (391)
T KOG2110|consen 243 HIFKLEK 249 (391)
T ss_pred EEEEecc
Confidence 9998875
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.63 E-value=3 Score=41.63 Aligned_cols=56 Identities=4% Similarity=-0.055 Sum_probs=33.5
Q ss_pred EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC--CCceEEEEECCCCCEEEEe
Q 008873 189 VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 189 ~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~--~~~~~~~~~s~dg~~l~~~ 256 (550)
+.++. +|+||+.|+..+.+. ...||..+. . +...+-. ..|...+.||||||+|+.-
T Consensus 293 in~f~-FS~DG~~LA~VSqDG---fLRvF~fdt--~------eLlg~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 293 INEFA-FSPDGKYLATVSQDG---FLRIFDFDT--Q------ELLGVMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccee-EcCCCceEEEEecCc---eEEEeeccH--H------HHHHHHHhhccceEEEEEcCCccEEEec
Confidence 34454 899999999887653 355554432 0 1111111 1356667899999988643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.58 E-value=4 Score=38.77 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=56.4
Q ss_pred EEEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 59 VRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
.++++||+.+-+.. .+. .-+..+..+++||||..|+..+.++. -|-++.+..|+ ++++..... .
T Consensus 153 GdV~l~d~~nl~~v~~I~---------aH~~~lAalafs~~G~llATASeKGT---VIRVf~v~~G~--kl~eFRRG~-~ 217 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN---------AHKGPLAALAFSPDGTLLATASEKGT---VIRVFSVPEGQ--KLYEFRRGT-Y 217 (391)
T ss_pred ceEEEEEcccceeeeEEE---------ecCCceeEEEECCCCCEEEEeccCce---EEEEEEcCCcc--EeeeeeCCc-e
Confidence 46888999986543 332 23456788999999999999886653 34444566665 233322111 1
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeC
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDI 174 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~ 174 (550)
.. ..++- +++++. |+..+...+--|||.++.
T Consensus 218 ~~-~IySL-----~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 218 PV-SIYSL-----SFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ee-EEEEE-----EECCCCCeEEEecCCCeEEEEEecc
Confidence 11 11111 224444 776766677789998873
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.48 E-value=11 Score=34.26 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=41.1
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEE--EECCCCe--EEEEEEecCCCceEEEEEECCCCceEEEEEe
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARV--NWMHGNI--LTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 131 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~wspDg~--~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~ 131 (550)
.-|.||||.++..+-+..+ ....... .|--.|+ -|+..++|..+.-.+|.||.+.+..+.|+..
T Consensus 77 ~Gl~VYDLsGkqLqs~~~G---------k~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~ 144 (364)
T COG4247 77 AGLRVYDLSGKQLQSVNPG---------KYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDS 144 (364)
T ss_pred CCeEEEecCCCeeeecCCC---------cccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCC
Confidence 4478899998877655322 1111111 2333566 4566788887778899999998777777654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.45 E-value=8.7 Score=37.01 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=39.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
.+.+||+.+|+.. ++++ -...+.+++|+-||.+++..++.. .|-++|..+|+..
T Consensus 155 ~v~iWnv~tgeal-i~l~--------hpd~i~S~sfn~dGs~l~TtckDK----kvRv~dpr~~~~v 208 (472)
T KOG0303|consen 155 TVSIWNVGTGEAL-ITLD--------HPDMVYSMSFNRDGSLLCTTCKDK----KVRVIDPRRGTVV 208 (472)
T ss_pred eEEEEeccCCcee-eecC--------CCCeEEEEEeccCCceeeeecccc----eeEEEcCCCCcEe
Confidence 5788999999864 3332 245778899999999988876443 3778888888754
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.34 Score=47.36 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh----hCCC--eeEEEEEcCCcCCccccc------chhhhh-
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA----RFPD--VFQCAVSGAPVTSWDGYD------TFYTEK- 459 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~----~~~~--~~~~~v~~~~~~~~~~~~------~~~~~~- 459 (550)
..-+.+++++|..++.-++++|.|.|.|+||+.++.-+- ..|. .++++.-...+.|...+. ..+...
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG~f~d~~~~~~~~~~~~~~~~~~ 216 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSGFFLDNPDYSGNPCIRSFYSDVV 216 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHHhccCceEEEeccccccccccCcccchhHHHHHHHHH
Confidence 455778899999886778899999999999999986553 2342 333333332333332211 111110
Q ss_pred -----ccCCCCCCccccc--cCChhhhhhcCCCcEEEEecCCC
Q 008873 460 -----YMGLPSEDPVGYE--YSSVMHHVHKMKGKLLLVHGMID 495 (550)
Q Consensus 460 -----~~g~~~~~~~~~~--~~~~~~~~~~i~~P~lii~G~~D 495 (550)
....|..-...+. =.-|...+..|++|++|++...|
T Consensus 217 ~~~~~~~~~p~~C~~~~~~~C~f~q~~~~~I~tPlFivns~YD 259 (361)
T PF03283_consen 217 GLQNWSKSLPESCVAQYDPECFFPQYLYPYIKTPLFIVNSLYD 259 (361)
T ss_pred HHHHhhccCCHhHHhccCccccchHHHHhhcCcceeeehhhhC
Confidence 0012221111111 12334556778999999999888
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.02 E-value=17 Score=35.90 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=27.5
Q ss_pred cEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
..|+++++++++.+.+..|-.....+. |+++|+ ++++-+.
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~-~d~~G~-l~~tdn~ 203 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHS-VDSWGD-VFFCDND 203 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccce-ECCCCC-EEEEccC
Confidence 369999999988888877643334444 888875 5655443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.83 E-value=19 Score=35.91 Aligned_cols=161 Identities=9% Similarity=0.013 Sum_probs=89.2
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCccE
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRH 168 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~ 168 (550)
-..+.++||++.++...... ....+..+|.++++...-.. .+ ..+.+ . ..++++ .++..+ .+...
T Consensus 118 P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~~~~~~~~-vG--~~P~~--~-------a~~p~g~~vyv~~-~~~~~ 183 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATNKVTATIP-VG--NTPTG--V-------AVDPDGNKVYVTN-SDDNT 183 (381)
T ss_pred CceEEECCCCCEEEEEeccc-CCceEEEEeCCCCeEEEEEe-cC--CCcce--E-------EECCCCCeEEEEe-cCCCe
Confidence 34578999998665553322 23468999998887543311 11 11110 1 123444 566665 34567
Q ss_pred EEEEeCCCceeec------ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCee--eCCCC-
Q 008873 169 LYLHDINGTCLGP------ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK--LTNGK- 239 (550)
Q Consensus 169 l~~~~~~~~~~~~------lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~--lt~~~- 239 (550)
|.+++..+....+ +..+... ....++++|+++|..-.... ...+..++.. .. .... ++.+.
T Consensus 184 v~vi~~~~~~v~~~~~~~~~~~~~~P--~~i~v~~~g~~~yV~~~~~~--~~~v~~id~~--~~----~v~~~~~~~~~~ 253 (381)
T COG3391 184 VSVIDTSGNSVVRGSVGSLVGVGTGP--AGIAVDPDGNRVYVANDGSG--SNNVLKIDTA--TG----NVTATDLPVGSG 253 (381)
T ss_pred EEEEeCCCcceeccccccccccCCCC--ceEEECCCCCEEEEEeccCC--CceEEEEeCC--Cc----eEEEeccccccC
Confidence 8888866654443 2112111 12348999999988766442 2467777762 21 1222 12222
Q ss_pred ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 240 ~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
.-.....+|+|+.+....+. ...+++++..+....
T Consensus 254 ~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~v~ 288 (381)
T COG3391 254 APRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDRVV 288 (381)
T ss_pred CCCceeECCCCCEEEEEecC---CCeEEEEeCCCCcee
Confidence 12334788999876555443 468888887766543
|
|
| >PLN02408 phospholipase A1 | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.43 Score=46.20 Aligned_cols=39 Identities=18% Similarity=0.096 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
+.+.+.++.+.++..-...+|.|.|||+||.+|..++..
T Consensus 182 ~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 182 EMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 345566666665532123469999999999999888764
|
|
| >PLN02571 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.43 Score=46.89 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
+++.+.++.+.++..-..-+|.+.|||+||.+|+.+|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 456666666665421112379999999999999888763
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=26 Score=36.67 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=89.1
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccE
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRH 168 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 168 (550)
...+++-|+||+.+++.... ...|+.... ++..+.+.+... .-.| +|+.++.+|..+++...+
T Consensus 344 ~~~s~avS~~g~~~A~~~~~---~~~l~~~~~-g~~~~~~~~g~~--------Lt~P-----S~d~~g~vWtv~~g~~~~ 406 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGS---RTTLYTVSP-GQPARALTSGST--------LTRP-----SFSPQDWVWTAGPGGNGR 406 (573)
T ss_pred cccceeecCCCceEEEecCC---CcEEEEecC-CCcceeeecCCC--------ccCC-----cccCCCCEEEeeCCCCce
Confidence 56678999999998887432 245777765 445555443211 0112 577777888777654456
Q ss_pred EEEEeCCCc-eee-----cccccCe----EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 169 LYLHDINGT-CLG-----PITEGDW----MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 169 l~~~~~~~~-~~~-----~lT~~~~----~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
|.++..++. +.. .+.. +| .+..+. .|.||-++++....++.....|..|--..+| .++.|+..
T Consensus 407 vv~~~~~g~~~~~~~~~~~v~~-~~l~g~~I~~lr-vSrDG~R~Avi~~~~g~~~V~va~V~R~~~G-----~P~~L~~~ 479 (573)
T PRK13614 407 IVAYRPTGVAEGAQAPTVTLTA-DWLAGRTVKELR-VSREGVRALVISEQNGKSRVQVAGIVRNEDG-----TPRELTAP 479 (573)
T ss_pred EEEEecCCCcccccccceeecc-cccCCCeeEEEE-ECCCccEEEEEEEeCCccEEEEEEEEeCCCC-----CeEEccCc
Confidence 666654332 111 1111 22 355554 8999999999876555323344434432222 34454432
Q ss_pred ------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 239 ------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 239 ------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
....+.+|..++..++.. +....-...+++.+..|
T Consensus 480 ~~~~~~~~~~sl~W~~~~sl~V~~-~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 480 ITLAADSDADTGAWVGDSTVVVTK-ASATSNVVPELLSVDAG 520 (573)
T ss_pred eecccCCCcceeEEcCCCEEEEEe-ccCCCcceEEEEEeCCC
Confidence 124455788777655544 33334456777776434
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.03 E-value=18 Score=34.53 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=87.2
Q ss_pred CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc-C
Q 008873 86 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK-T 164 (550)
Q Consensus 86 ~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~ 164 (550)
-+..++.+.+-|-|..|+.. .|++. |..-+.++|.+..-.... +.|+-. +.+ ..|+.++.|-. +
T Consensus 192 h~h~vS~V~f~P~gd~ilS~-srD~t---ik~We~~tg~cv~t~~~h-~ewvr~---v~v-------~~DGti~As~s~d 256 (406)
T KOG0295|consen 192 HEHGVSSVFFLPLGDHILSC-SRDNT---IKAWECDTGYCVKTFPGH-SEWVRM---VRV-------NQDGTIIASCSND 256 (406)
T ss_pred cccceeeEEEEecCCeeeec-ccccc---eeEEecccceeEEeccCc-hHhEEE---EEe-------cCCeeEEEecCCC
Confidence 35678899999999877655 34432 666678888775543322 236532 222 45676666543 3
Q ss_pred CccEEEEEeCCCcee-ecccccCeEEEEEEeEee--------------cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC
Q 008873 165 GFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNE--------------ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL 229 (550)
Q Consensus 165 g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~--------------dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~ 229 (550)
..-++|.+. +++. ..++..+..+.-+ .|.| ++..+.+...++.. ..+|-|++ |
T Consensus 257 qtl~vW~~~--t~~~k~~lR~hEh~vEci-~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt--Ik~wdv~t---g---- 324 (406)
T KOG0295|consen 257 QTLRVWVVA--TKQCKAELREHEHPVECI-AWAPESSYPSISEATGSTNGGQVLGSGSRDKT--IKIWDVST---G---- 324 (406)
T ss_pred ceEEEEEec--cchhhhhhhccccceEEE-EecccccCcchhhccCCCCCccEEEeecccce--EEEEeccC---C----
Confidence 334666664 3322 2344444333322 2332 23345555555442 45554443 2
Q ss_pred CCCeee-C---CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 230 EAPVKL-T---NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 230 ~~~~~l-t---~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+| | ..++.-..+|+|.|++|+-.+.+ ..|.+.|+.+++-.+.+.
T Consensus 325 ---~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD----ktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 325 ---MCLFTLVGHDNWVRGVAFSPGGKYILSCADD----KTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred ---eEEEEEecccceeeeeEEcCCCeEEEEEecC----CcEEEEEeccceeeeccC
Confidence 122 2 23346667899999987544332 367777776665444443
|
|
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=89.92 E-value=7.9 Score=35.97 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=70.7
Q ss_pred CCeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc
Q 008873 56 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 56 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
|-.++++.+|.++++++.|=.++. .+...+-+-++.+-+.|=...|++.......+.-||.++..+|++++|...+...
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesi-h~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~K 153 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESI-HDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLK 153 (339)
T ss_pred eccceEEEEEcCCCeEEEEEeccc-CCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcC
Confidence 445899999999999876522110 1234555678888999988877777666666667999999999999988754321
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEcc--CCccEEEEEeCCCcee
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEK--TGFRHLYLHDINGTCL 179 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~g~~~l~~~~~~~~~~ 179 (550)
-. .-.|...|..+. .|...|..+|+.+++.
T Consensus 154 G~--------------~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 154 GT--------------LVHDYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ce--------------EeeeeEEEeccccccCCceEEEEEccCCeE
Confidence 00 011212222221 4567888888766655
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.39 E-value=16 Score=38.00 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=27.9
Q ss_pred CCccEEEEEeCCCceeeccccc--CeEEEEEEeEeecCCEEEEEE
Q 008873 164 TGFRHLYLHDINGTCLGPITEG--DWMVEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~--~~~~~~~~~~s~dg~~l~f~~ 206 (550)
.|.. ++..+...++.+++..+ .-++.++. |+||++.|++..
T Consensus 478 ~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~-fspDg~tlFvni 520 (524)
T PF05787_consen 478 DGNN-VWAYDPDTGELKRFLVGPNGAEITGPC-FSPDGRTLFVNI 520 (524)
T ss_pred ccce-eeeccccccceeeeccCCCCcccccce-ECCCCCEEEEEE
Confidence 4544 77777777777766554 33556665 999999988754
|
|
| >PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids [] | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.3 Score=38.68 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=41.7
Q ss_pred CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh--C----CC
Q 008873 362 GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR--F----PD 435 (550)
Q Consensus 362 G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~--~----~~ 435 (550)
...+..++|+-..... .+..+... ...++...++...++- -..+|.|.|+|.|+.++..++.. . .+
T Consensus 39 ~~~~~~V~YpA~~~~~-~y~~S~~~-----G~~~~~~~i~~~~~~C--P~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~ 110 (179)
T PF01083_consen 39 SVAVQGVEYPASLGPN-SYGDSVAA-----GVANLVRLIEEYAARC--PNTKIVLAGYSQGAMVVGDALSGDGLPPDVAD 110 (179)
T ss_dssp EEEEEE--S---SCGG-SCHHHHHH-----HHHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHTTSSHHHHH
T ss_pred eeEEEecCCCCCCCcc-cccccHHH-----HHHHHHHHHHHHHHhC--CCCCEEEEecccccHHHHHHHHhccCChhhhh
Confidence 3666678888654321 12222111 1445555555555442 24699999999999999999876 1 24
Q ss_pred eeEEEEEcC
Q 008873 436 VFQCAVSGA 444 (550)
Q Consensus 436 ~~~~~v~~~ 444 (550)
++.+++++.
T Consensus 111 ~I~avvlfG 119 (179)
T PF01083_consen 111 RIAAVVLFG 119 (179)
T ss_dssp HEEEEEEES
T ss_pred hEEEEEEec
Confidence 567766654
|
Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=89.22 E-value=22 Score=34.56 Aligned_cols=127 Identities=12% Similarity=0.064 Sum_probs=57.9
Q ss_pred CCCceeEEEEECCC----CeEEEEEEec----CCCceEEEEEECCCC-----ceEEEEEe-ec-CceeeccCccccCCCC
Q 008873 85 YDEEYLARVNWMHG----NILTAQVLNR----SQTKLKVLKFDIKTG-----QRKVILVE-EL-DSWVNLHDCFTPLDKG 149 (550)
Q Consensus 85 ~~~~~~~~~~wspD----g~~i~~~~~r----~~~~~~l~~~~~~~g-----~~~~l~~~-~~-~~~~~~~~~~~~~~~~ 149 (550)
..+.....+++.|+ +.+.+..... ......|+++....+ +.+.|... .. .........+
T Consensus 46 ~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l------ 119 (331)
T PF07995_consen 46 DGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGL------ 119 (331)
T ss_dssp STTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEE------
T ss_pred cccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccc------
Confidence 34556677788885 6644444432 123456777766554 22333322 21 0000000011
Q ss_pred CccCCCcEEEEEccC------------CccEEEEEeCCCc-------------eeecccccCeEEEEEEeEeecCCEEEE
Q 008873 150 VTKYSGGFIWASEKT------------GFRHLYLHDINGT-------------CLGPITEGDWMVEQIVGVNEASGQVYF 204 (550)
Q Consensus 150 ~~~~~~~~~~~s~~~------------g~~~l~~~~~~~~-------------~~~~lT~~~~~~~~~~~~s~dg~~l~f 204 (550)
.+.+|+.+|++-.+ ....|.+++.+|. ..+..+.|-.+..... |+|....|+.
T Consensus 120 -~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~-~d~~tg~l~~ 197 (331)
T PF07995_consen 120 -AFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLA-FDPNTGRLWA 197 (331)
T ss_dssp -EE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEE-EETTTTEEEE
T ss_pred -cCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEE-EECCCCcEEE
Confidence 34567766665321 1357889988765 2233344444444444 8888456776
Q ss_pred EEcCCCCceeEEEEEE
Q 008873 205 TGTLDGPLESHLYCAK 220 (550)
Q Consensus 205 ~~~~~~~~~~~l~~v~ 220 (550)
.-+..+. .-.|.++.
T Consensus 198 ~d~G~~~-~dein~i~ 212 (331)
T PF07995_consen 198 ADNGPDG-WDEINRIE 212 (331)
T ss_dssp EEE-SSS-SEEEEEE-
T ss_pred EccCCCC-CcEEEEec
Confidence 5443222 24455554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PLN02517 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.2 Score=45.76 Aligned_cols=73 Identities=10% Similarity=-0.003 Sum_probs=40.6
Q ss_pred hhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh-hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHH
Q 008873 352 DMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK-HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITL 430 (550)
Q Consensus 352 ~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~-~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~ 430 (550)
..+.+.|++.||. -.|.+|... +|+.+.. ....+.-+..+...|+.+.+.. ...+|.|+||||||.++++.+
T Consensus 159 ~kLIe~L~~iGY~--~~nL~gAPY---DWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~lyFL 231 (642)
T PLN02517 159 AVLIANLARIGYE--EKNMYMAAY---DWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLHFM 231 (642)
T ss_pred HHHHHHHHHcCCC--CCceeeccc---ccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHHHH
Confidence 4468889999986 344444321 1111100 0000001344555555554432 246899999999999999876
Q ss_pred h
Q 008873 431 A 431 (550)
Q Consensus 431 ~ 431 (550)
.
T Consensus 232 ~ 232 (642)
T PLN02517 232 K 232 (642)
T ss_pred H
Confidence 5
|
|
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=88.92 E-value=2.9 Score=39.32 Aligned_cols=33 Identities=12% Similarity=-0.060 Sum_probs=25.4
Q ss_pred CceEEEEechhHHHHHHHHhhCCC--eeEEEEEcC
Q 008873 412 GHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGA 444 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~~~~--~~~~~v~~~ 444 (550)
+-+-++|+|.||.+.-.++.+-|+ .++-.|+.+
T Consensus 95 ~G~naIGfSQGglflRa~ierc~~~p~V~nlISlg 129 (306)
T PLN02606 95 EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLG 129 (306)
T ss_pred CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEec
Confidence 458899999999999888887655 356666654
|
|
| >PLN02324 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.67 Score=45.51 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
+.+.+.++.|.++..-..-+|.+.|||+||.+|+.+|.
T Consensus 197 eqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 197 EQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHH
Confidence 34555666666653211237999999999999988875
|
|
| >PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria | Back alignment and domain information |
|---|
Probab=88.77 E-value=1.3 Score=38.20 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEE-EEEcCC
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC-AVSGAP 445 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~-~v~~~~ 445 (550)
.++..+++-|.... ....++.++|||||..++-.++...+..+.. ++..+|
T Consensus 92 ~~L~~f~~gl~a~~-~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSP 143 (177)
T PF06259_consen 92 PRLARFLDGLRATH-GPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSP 143 (177)
T ss_pred HHHHHHHHHhhhhc-CCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCC
Confidence 34444444444332 3456899999999999999988763333333 334444
|
Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates. |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.76 E-value=15 Score=38.82 Aligned_cols=36 Identities=11% Similarity=-0.065 Sum_probs=24.6
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEE
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQV 105 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~ 105 (550)
+.+|++-..++.-. .+-...++.++++|||+..+.-
T Consensus 434 vRiWsI~d~~Vv~W---------~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 434 VRLWSISDKKVVDW---------NDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred eEEeecCcCeeEee---------hhhhhhheeEEeccCCceEEEE
Confidence 45567776655432 3456789999999999965543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=88.70 E-value=15 Score=33.92 Aligned_cols=195 Identities=14% Similarity=0.166 Sum_probs=88.4
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCcc
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFR 167 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~ 167 (550)
..++.++|.||.+.++.+.+.. ..|+.++.++.-.+++. ..+..-.+ .+..+ .++.|+..+++.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~---~~i~els~~G~vlr~i~-l~g~~D~E---gI~y~------g~~~~vl~~Er~~-- 86 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEP---GEIYELSLDGKVLRRIP-LDGFGDYE---GITYL------GNGRYVLSEERDQ-- 86 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTT---TEEEEEETT--EEEEEE--SS-SSEE---EEEE-------STTEEEEEETTTT--
T ss_pred CCccccEEcCCCCeEEEEECCC---CEEEEEcCCCCEEEEEe-CCCCCCce---eEEEE------CCCEEEEEEcCCC--
Confidence 3478899999988887777664 35999998643333332 21111000 01111 1233555665554
Q ss_pred EEEEEeC--CCc-----eeecccc-----cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC-CCCCee
Q 008873 168 HLYLHDI--NGT-----CLGPITE-----GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT-LEAPVK 234 (550)
Q Consensus 168 ~l~~~~~--~~~-----~~~~lT~-----~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~-~~~~~~ 234 (550)
.|+.++. .+. +.+.++- ++....+.. |++.++.|++.- +..| ..||.++....+... ......
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla-~D~~~~~L~v~k-E~~P--~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLA-YDPKTNRLFVAK-ERKP--KRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEE-EETTTTEEEEEE-ESSS--EEEEEEESTT-SS--EEEE-HH
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEE-EcCCCCEEEEEe-CCCC--hhhEEEccccCccceeeccccc
Confidence 6666664 221 1222331 233455664 999999988764 3444 678888751111000 000000
Q ss_pred eC----CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCC
Q 008873 235 LT----NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDG 308 (550)
Q Consensus 235 lt----~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (550)
+. .-.....+++.|....+.+.... ...|..++. +|+....+.-... ...+ ...++++|=+.+.. +|
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~e---s~~l~~~d~-~G~~~~~~~L~~g-~~gl-~~~~~QpEGIa~d~-~G 233 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDE---SRLLLELDR-QGRVVSSLSLDRG-FHGL-SKDIPQPEGIAFDP-DG 233 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETT---TTEEEEE-T-T--EEEEEE-STT-GGG--SS---SEEEEEE-T-T-
T ss_pred cccccceeccccceEEcCCCCeEEEEECC---CCeEEEECC-CCCEEEEEEeCCc-ccCc-ccccCCccEEEECC-CC
Confidence 11 00113444666765555544322 247888884 6764443322211 1122 24577889999885 55
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.66 E-value=7.8 Score=37.50 Aligned_cols=106 Identities=8% Similarity=0.087 Sum_probs=60.5
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g 165 (550)
.+.++++.-|+||..++.. .|.. .|-++|..+-+++..+...+.....+.... .++|++ |+..-.-+
T Consensus 341 gg~vtSl~ls~~g~~lLss-sRDd---tl~viDlRt~eI~~~~sA~g~k~asDwtrv-------vfSpd~~YvaAGS~d- 408 (459)
T KOG0288|consen 341 GGRVTSLDLSMDGLELLSS-SRDD---TLKVIDLRTKEIRQTFSAEGFKCASDWTRV-------VFSPDGSYVAAGSAD- 408 (459)
T ss_pred CcceeeEeeccCCeEEeee-cCCC---ceeeeecccccEEEEeecccccccccccee-------EECCCCceeeeccCC-
Confidence 4578899999999966555 3433 277889999888877765433211111111 234444 54442223
Q ss_pred ccEEEEEeCCCceee-ccccc--CeEEEEEEeEeecCCEEEEEE
Q 008873 166 FRHLYLHDINGTCLG-PITEG--DWMVEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~-~lT~~--~~~~~~~~~~s~dg~~l~f~~ 206 (550)
..||+.+..+++.+ +|... +-.+... .|++.|+.++-..
T Consensus 409 -gsv~iW~v~tgKlE~~l~~s~s~~aI~s~-~W~~sG~~Llsad 450 (459)
T KOG0288|consen 409 -GSVYIWSVFTGKLEKVLSLSTSNAAITSL-SWNPSGSGLLSAD 450 (459)
T ss_pred -CcEEEEEccCceEEEEeccCCCCcceEEE-EEcCCCchhhccc
Confidence 46777777777655 33322 2123333 4888887776443
|
|
| >PLN00413 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.78 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 395 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 395 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.+...++.+.++. ...+|.+.|||+||.+|..++.
T Consensus 269 ~i~~~Lk~ll~~~--p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 269 TILRHLKEIFDQN--PTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHC--CCCeEEEEecCHHHHHHHHHHH
Confidence 4455555555542 2458999999999999998874
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.31 E-value=41 Score=37.73 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=27.5
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS 109 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~ 109 (550)
|.++|.++.....+. .-+..+...+||||++.++++.++.
T Consensus 92 iilvd~et~~~eivg---------~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 92 IILVDPETLELEIVG---------NVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred EEEEcccccceeeee---------eccCceEEEeecCCCcEEEEEeCCc
Confidence 455566666554442 2355778899999999998887654
|
|
| >PLN02802 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.75 Score=46.22 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
++++..++.+.++..-..-+|.|.|||+||.+|..++..
T Consensus 312 eqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 312 ESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 456666777666532122479999999999999887763
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=88.22 E-value=21 Score=32.95 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=24.9
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEE
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 128 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l 128 (550)
.....++||||+..+++..... .|..+|+.+.+...|
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G----~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTG----TIRVFDLMGSELFVI 80 (282)
T ss_pred chheEEEECCCCcEEEEEcCCC----eEEEEecccceeEEc
Confidence 3455679999999998875443 366667776554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.19 E-value=17 Score=38.08 Aligned_cols=44 Identities=11% Similarity=0.007 Sum_probs=26.1
Q ss_pred ccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 162 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
-.+|.-+|.+-. +..++..+..|-.. .+. .|+++|..|++.++.
T Consensus 236 y~nGr~QiMR~e-ND~~Pvv~dtgm~~-vga-kWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 236 YANGRMQIMRSE-NDPEPVVVDTGMKI-VGA-KWNHNGAVLAVCGND 279 (1189)
T ss_pred EcCceehhhhhc-CCCCCeEEecccEe-ecc-eecCCCcEEEEccCc
Confidence 345665565543 23344455555433 333 499999999988874
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.19 E-value=23 Score=33.30 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=47.4
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..++|++|++.||-...+ .++++|...+....+..- .+.
T Consensus 14 tchAwn~drt~iAv~~~~------------------------------------~evhiy~~~~~~~w~~~h-----tls 52 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNN------------------------------------HEVHIYSMLGADLWEPAH-----TLS 52 (361)
T ss_pred eeeeecCCCceEEeccCC------------------------------------ceEEEEEecCCCCceece-----ehh
Confidence 467899999999886443 245667776665332211 123
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
+-+..++.+.|+|-+..|+......+ ..||... ++|+
T Consensus 53 ~Hd~~vtgvdWap~snrIvtcs~drn--ayVw~~~-~~~~ 89 (361)
T KOG1523|consen 53 EHDKIVTGVDWAPKSNRIVTCSHDRN--AYVWTQP-SGGT 89 (361)
T ss_pred hhCcceeEEeecCCCCceeEccCCCC--ccccccC-CCCe
Confidence 45667888999999988888754322 2355543 4444
|
|
| >PLN02633 palmitoyl protein thioesterase family protein | Back alignment and domain information |
|---|
Probab=88.04 E-value=3.2 Score=39.12 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=26.4
Q ss_pred CceEEEEechhHHHHHHHHhhCCC--eeEEEEEcCC
Q 008873 412 GHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAP 445 (550)
Q Consensus 412 ~~i~i~G~S~GG~~a~~~~~~~~~--~~~~~v~~~~ 445 (550)
+-+-++|+|.||.++-.++.+-++ .++-.|+.++
T Consensus 94 ~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 94 QGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred CcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 458899999999999888887665 3667776544
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.7 Score=37.34 Aligned_cols=77 Identities=23% Similarity=0.069 Sum_probs=44.0
Q ss_pred hHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHH-HHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh-
Q 008873 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT-GAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR- 432 (550)
Q Consensus 355 ~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~- 432 (550)
...+. ..+.|+.++.+|.+..... ....+++.. .++.+.... ...++.++|||+||.++..++.+
T Consensus 19 ~~~l~-~~~~v~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~l~~~~--~~~~~~l~g~s~Gg~~a~~~a~~l 85 (212)
T smart00824 19 AAALR-GRRDVSALPLPGFGPGEPL----------PASADALVEAQAEAVLRAA--GGRPFVLVGHSSGGLLAHAVAARL 85 (212)
T ss_pred HHhcC-CCccEEEecCCCCCCCCCC----------CCCHHHHHHHHHHHHHHhc--CCCCeEEEEECHHHHHHHHHHHHH
Confidence 44443 4689999999988633211 011222222 222232221 24578999999999999877764
Q ss_pred --CCCeeEEEEEcC
Q 008873 433 --FPDVFQCAVSGA 444 (550)
Q Consensus 433 --~~~~~~~~v~~~ 444 (550)
.+..+..++...
T Consensus 86 ~~~~~~~~~l~~~~ 99 (212)
T smart00824 86 EARGIPPAAVVLLD 99 (212)
T ss_pred HhCCCCCcEEEEEc
Confidence 334455555443
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.14 E-value=18 Score=32.78 Aligned_cols=128 Identities=14% Similarity=0.135 Sum_probs=67.2
Q ss_pred EEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 61 LGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 61 l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
+.+||..+++..+ |.+ ...+.+.-.|+||++|...-.+. |--.++++=+ .|-.-.-+.-++.
T Consensus 167 VRLWD~rTgt~v~sL~~----------~s~VtSlEvs~dG~ilTia~gss-----V~Fwdaksf~--~lKs~k~P~nV~S 229 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEF----------NSPVTSLEVSQDGRILTIAYGSS-----VKFWDAKSFG--LLKSYKMPCNVES 229 (334)
T ss_pred eEEEEeccCcEEEEEec----------CCCCcceeeccCCCEEEEecCce-----eEEecccccc--ceeeccCcccccc
Confidence 5567888876543 333 44566778999999776543221 2223333321 1111111110100
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecc-cccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPI-TEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~l-T~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
. +..|++ +++.-. .-.-+|.+|-.+++..-. ..|.+ .|.-. .+|||| .+|-++++++. ..|
T Consensus 230 -----A-----SL~P~k~~fVaGg--ed~~~~kfDy~TgeEi~~~nkgh~gpVhcV-rFSPdG-E~yAsGSEDGT--irl 293 (334)
T KOG0278|consen 230 -----A-----SLHPKKEFFVAGG--EDFKVYKFDYNTGEEIGSYNKGHFGPVHCV-RFSPDG-ELYASGSEDGT--IRL 293 (334)
T ss_pred -----c-----cccCCCceEEecC--cceEEEEEeccCCceeeecccCCCCceEEE-EECCCC-ceeeccCCCce--EEE
Confidence 0 224444 333322 223577888777765443 34432 23333 489998 58888888775 778
Q ss_pred EEEEe
Q 008873 217 YCAKL 221 (550)
Q Consensus 217 ~~v~~ 221 (550)
|.+..
T Consensus 294 WQt~~ 298 (334)
T KOG0278|consen 294 WQTTP 298 (334)
T ss_pred EEecC
Confidence 87765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.13 E-value=12 Score=39.38 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=53.4
Q ss_pred ccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCC
Q 008873 151 TKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230 (550)
Q Consensus 151 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~ 230 (550)
+|+.+.|+..+--+---.||....+ ..++.....++. .-+ .+.|-.+..++++.-++ ...||.+.- .
T Consensus 376 SWSKn~fLLSSSMDKTVRLWh~~~~-~CL~~F~HndfV-TcV-aFnPvDDryFiSGSLD~--KvRiWsI~d----~---- 442 (712)
T KOG0283|consen 376 SWSKNNFLLSSSMDKTVRLWHPGRK-ECLKVFSHNDFV-TCV-AFNPVDDRYFISGSLDG--KVRLWSISD----K---- 442 (712)
T ss_pred ccccCCeeEeccccccEEeecCCCc-ceeeEEecCCee-EEE-EecccCCCcEeeccccc--ceEEeecCc----C----
Confidence 6777667766655555567776532 245566666664 333 37787777777777665 367775431 1
Q ss_pred CCeeeCCC-CceEEEEECCCCCEEEE
Q 008873 231 APVKLTNG-KGKHVAVLDHNMRNFVD 255 (550)
Q Consensus 231 ~~~~lt~~-~~~~~~~~s~dg~~l~~ 255 (550)
++.--+.- +-+..+.++|||+..++
T Consensus 443 ~Vv~W~Dl~~lITAvcy~PdGk~avI 468 (712)
T KOG0283|consen 443 KVVDWNDLRDLITAVCYSPDGKGAVI 468 (712)
T ss_pred eeEeehhhhhhheeEEeccCCceEEE
Confidence 22222221 22455678999987654
|
|
| >PLN02162 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.1 Score=44.46 Aligned_cols=36 Identities=25% Similarity=0.069 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
..+...++.+.++. ...++.+.|||+||.+|..+++
T Consensus 262 ~~I~~~L~~lL~k~--p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 262 YTIRQMLRDKLARN--KNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHhC--CCceEEEEecChHHHHHHHHHH
Confidence 34445555444432 2458999999999999988754
|
|
| >PLN02753 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=86.23 E-value=1.1 Score=45.19 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHcCCCC---CCceEEEEechhHHHHHHHHh
Q 008873 393 AEDQLTGAEWLIKQGLAK---VGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d---~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.+.+.+.++.|.++..-+ .-+|.|.|||+||.+|+.+|.
T Consensus 290 reQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 290 REQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAY 331 (531)
T ss_pred HHHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHH
Confidence 345666677776653211 358999999999999998875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=86.19 E-value=13 Score=37.05 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=56.2
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+..++|.++.....+.. + ...++-+++||||..++..+... .--||.++..+.+-.++-.... ..+
T Consensus 428 G~w~V~d~e~~~lv~~~~--------d-~~~ls~v~ysp~G~~lAvgs~d~--~iyiy~Vs~~g~~y~r~~k~~g-s~i- 494 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHT--------D-NEQLSVVRYSPDGAFLAVGSHDN--HIYIYRVSANGRKYSRVGKCSG-SPI- 494 (626)
T ss_pred ceEEEEecccceeEEEEe--------c-CCceEEEEEcCCCCEEEEecCCC--eEEEEEECCCCcEEEEeeeecC-cee-
Confidence 456778888866555533 2 55678899999999888876543 3357777776655555444322 221
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYL 171 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~ 171 (550)
.-+ .|+.|+-++.++..++.-||-
T Consensus 495 -----thL----DwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 495 -----THL----DWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred -----EEe----eecCCCceEEeccCceEEEEE
Confidence 111 367777555666666665665
|
|
| >KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.04 E-value=2 Score=42.56 Aligned_cols=74 Identities=15% Similarity=-0.012 Sum_probs=43.5
Q ss_pred chhHhHHHHhCCcE------EEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHH
Q 008873 351 VDMRAQYLRSKGIL------VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGY 424 (550)
Q Consensus 351 ~~~~~~~l~~~G~~------vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~ 424 (550)
|..+.+.|+.-||. -+.+|.|-+-...+ . ... -+..+..-++..-+.. ...+|.|++|||||.
T Consensus 126 w~~~i~~lv~~GYe~~~~l~ga~YDwRls~~~~e----~-rd~----yl~kLK~~iE~~~~~~--G~kkVvlisHSMG~l 194 (473)
T KOG2369|consen 126 WHELIENLVGIGYERGKTLFGAPYDWRLSYHNSE----E-RDQ----YLSKLKKKIETMYKLN--GGKKVVLISHSMGGL 194 (473)
T ss_pred HHHHHHHHHhhCcccCceeeccccchhhccCChh----H-HHH----HHHHHHHHHHHHHHHc--CCCceEEEecCCccH
Confidence 34456778887876 35567774321110 0 000 1333444444443332 347999999999999
Q ss_pred HHHHHHhhCCC
Q 008873 425 LSAITLARFPD 435 (550)
Q Consensus 425 ~a~~~~~~~~~ 435 (550)
+.++.+-.++.
T Consensus 195 ~~lyFl~w~~~ 205 (473)
T KOG2369|consen 195 YVLYFLKWVEA 205 (473)
T ss_pred HHHHHHhcccc
Confidence 99998876655
|
|
| >PLN02761 lipase class 3 family protein | Back alignment and domain information |
|---|
Probab=86.03 E-value=1.2 Score=45.00 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHcCC---CC-CCceEEEEechhHHHHHHHHh
Q 008873 393 AEDQLTGAEWLIKQGL---AK-VGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~---~d-~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.++++..++.|.++.. -+ .-+|.|.|||+||.+|+.+|.
T Consensus 271 R~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 271 REQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAY 313 (527)
T ss_pred HHHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHH
Confidence 3456666777765431 12 247999999999999998774
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.74 E-value=8.5 Score=37.25 Aligned_cols=64 Identities=16% Similarity=0.051 Sum_probs=40.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE 131 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~ 131 (550)
.|-++|+.+.+++..-...+ .......+.+.+||||.+++.-+... .||+-++.+|++..+...
T Consensus 364 tl~viDlRt~eI~~~~sA~g----~k~asDwtrvvfSpd~~YvaAGS~dg----sv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEG----FKCASDWTRVVFSPDGSYVAAGSADG----SVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ceeeeecccccEEEEeeccc----cccccccceeEECCCCceeeeccCCC----cEEEEEccCceEEEEecc
Confidence 35678888887765422111 01112366789999999877654332 388889999998765543
|
|
| >PLN02934 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=85.72 E-value=1.2 Score=44.77 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
..+...++.+.++. ...+|.+.|||+||.+|..++.
T Consensus 305 ~~v~~~lk~ll~~~--p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 305 YAVRSKLKSLLKEH--KNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHC--CCCeEEEeccccHHHHHHHHHH
Confidence 34556666665553 2358999999999999988864
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=84.81 E-value=33 Score=31.84 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=69.9
Q ss_pred CeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEE---EEEee
Q 008873 57 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKV---ILVEE 132 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~---l~~~~ 132 (550)
-+++|.-+|.++++...... .+-.+..+-+.|.||.+ ..--..--..+..+||++..+.++... |....
T Consensus 73 Nkvqiv~ld~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~k 145 (364)
T KOG0290|consen 73 NKVQIVQLDEDSGELVEDAN-------FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNK 145 (364)
T ss_pred CeeEEEEEccCCCceeccCC-------CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCc
Confidence 35677777777776654321 23344566778999975 211111111234579999876655432 11111
Q ss_pred cCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeC--CCceeecccccCeEEEEEEeEeecCCEEEEEEcCCC
Q 008873 133 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDI--NGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 210 (550)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~--~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~ 210 (550)
...+ ..|.-+|.+.. .++. ++-.|.-+--=.||-+.. .+.-.+||-.++-+|.++. |+.++..++.+...++
T Consensus 146 ns~~--~aPlTSFDWne--~dp~-~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa-f~~~s~~~FASvgaDG 219 (364)
T KOG0290|consen 146 NSEF--CAPLTSFDWNE--VDPN-LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA-FLKGSRDVFASVGADG 219 (364)
T ss_pred cccc--CCccccccccc--CCcc-eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE-eccCccceEEEecCCC
Confidence 1111 01111221111 1222 444433222223343332 2223567777787888876 8877777776666665
Q ss_pred C
Q 008873 211 P 211 (550)
Q Consensus 211 ~ 211 (550)
.
T Consensus 220 S 220 (364)
T KOG0290|consen 220 S 220 (364)
T ss_pred c
Confidence 3
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.68 E-value=32 Score=31.55 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=80.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC-CceEEEEEECCC-------Cce-EEEEE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKT-------GQR-KVILV 130 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~~-------g~~-~~l~~ 130 (550)
.+.+||.++|+.... ....-.+..+.||++|.+++++.+..- ....|.++++.. .++ ..|..
T Consensus 75 t~kLWDv~tGk~la~---------~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 75 TAKLWDVETGKQLAT---------WKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eeEEEEcCCCcEEEE---------eecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 356789999876422 123445677889999998887765433 334566666552 221 22222
Q ss_pred eecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCcee-ecc-cccCeEEEEEEeEeecCCEEEEEEc
Q 008873 131 EELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCL-GPI-TEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~-~~l-T~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
..+. .-+. .|++ +.+++.-..+| .|-.+|+.+++. ..- ....-.+.+. ..|+|.. .++++.
T Consensus 146 ~~sk-------it~a-----~Wg~l~~~ii~Ghe~G--~is~~da~~g~~~v~s~~~h~~~Ind~-q~s~d~T-~FiT~s 209 (327)
T KOG0643|consen 146 PDSK-------ITSA-----LWGPLGETIIAGHEDG--SISIYDARTGKELVDSDEEHSSKINDL-QFSRDRT-YFITGS 209 (327)
T ss_pred Cccc-------eeee-----eecccCCEEEEecCCC--cEEEEEcccCceeeechhhhccccccc-cccCCcc-eEEecc
Confidence 1111 0000 2344 33666655555 466677665532 111 1111223333 4788864 444555
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEe
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~ 256 (550)
.+.. ..|+-+.. -. -.+......-....+++|-...+++.
T Consensus 210 ~Dtt--akl~D~~t---l~----v~Kty~te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 210 KDTT--AKLVDVRT---LE----VLKTYTTERPVNTAAISPLLDHVILG 249 (327)
T ss_pred cCcc--ceeeeccc---ee----eEEEeeecccccceecccccceEEec
Confidence 4432 44443221 00 11222222235666788877766544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.63 E-value=28 Score=34.56 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=92.7
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCcee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~ 137 (550)
+++-+|+..+-...+. + ..+...++++.+-.||++++.. ...+. +-++|.++..+ +.+.....+.-.
T Consensus 48 ~rvqly~~~~~~~~k~-~-------srFk~~v~s~~fR~DG~LlaaG--D~sG~--V~vfD~k~r~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKT-F-------SRFKDVVYSVDFRSDGRLLAAG--DESGH--VKVFDMKSRVILRQLYAHQAPVHV 115 (487)
T ss_pred cEEEEEecchhhhhhh-H-------HhhccceeEEEeecCCeEEEcc--CCcCc--EEEeccccHHHHHHHhhccCceeE
Confidence 5566677777554431 1 3445677889999999977654 32233 33444444221 222222222100
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceee-ccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
..|.+ ..+.++...+.+.-..+|.. ++.... .|+.. ++ |.. ..|+|..+++++++.-++. ..
T Consensus 116 ---~~f~~-------~d~t~l~s~sDd~v~k~~d~--s~a~v~~~l~~htDY-VR~-g~~~~~~~hivvtGsYDg~--vr 179 (487)
T KOG0310|consen 116 ---TKFSP-------QDNTMLVSGSDDKVVKYWDL--STAYVQAELSGHTDY-VRC-GDISPANDHIVVTGSYDGK--VR 179 (487)
T ss_pred ---EEecc-------cCCeEEEecCCCceEEEEEc--CCcEEEEEecCCcce-eEe-eccccCCCeEEEecCCCce--EE
Confidence 11222 12222222223333344443 344331 23322 33 332 3488898999999987764 67
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+|-... -+. ....+..+.-..++.+-|.|..|+ ++++ +++-+.|+.+|.
T Consensus 180 l~DtR~--~~~----~v~elnhg~pVe~vl~lpsgs~ia-sAgG----n~vkVWDl~~G~ 228 (487)
T KOG0310|consen 180 LWDTRS--LTS----RVVELNHGCPVESVLALPSGSLIA-SAGG----NSVKVWDLTTGG 228 (487)
T ss_pred EEEecc--CCc----eeEEecCCCceeeEEEcCCCCEEE-EcCC----CeEEEEEecCCc
Confidence 775544 222 445555555567776778877654 4333 478888887565
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=84.54 E-value=11 Score=39.06 Aligned_cols=49 Identities=8% Similarity=0.044 Sum_probs=31.4
Q ss_pred EEEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEE
Q 008873 59 VRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKF 118 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~ 118 (550)
+.|++|+..+-+..+ | ..-.-.++.+.|||||++|+.++ |+. ...||..
T Consensus 552 AvI~lw~t~~W~~~~~L---------~~HsLTVT~l~FSpdg~~LLsvs-RDR-t~sl~~~ 601 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQEL---------EGHSLTVTRLAFSPDGRYLLSVS-RDR-TVSLYEV 601 (764)
T ss_pred eEEEEEeccchhhhhee---------cccceEEEEEEECCCCcEEEEee-cCc-eEEeeee
Confidence 568889988754333 3 12244678899999999887764 332 2245555
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=83.66 E-value=64 Score=34.21 Aligned_cols=167 Identities=14% Similarity=0.014 Sum_probs=88.6
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-----EEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-----KVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 163 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 163 (550)
...+++-|+||..++++... ...|++=++.++.. +.+... . .+.. ++|+.++.+|..++
T Consensus 364 ~~~s~avS~~g~~~A~v~~~---~~~l~vg~~~~~~~~~~~~~~~~~~--~-------~Lt~----PS~d~~g~vWtvd~ 427 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISAD---GDSVYVGSLTPGASIGVHSWGVTAD--G-------RLTS----PSWDGRGDLWVVDR 427 (599)
T ss_pred CccceEEcCCCceEEEEcCC---CcEEEEeccCCCCccccccceeecc--C-------cccC----CcCcCCCCEEEecC
Confidence 56788999999988888532 23566655543332 222221 1 1111 15777778887766
Q ss_pred C--CccEEEEEeCCCceeeccccc---CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 164 T--GFRHLYLHDINGTCLGPITEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 164 ~--g~~~l~~~~~~~~~~~~lT~~---~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
+ +..-|.++.. +++...+... ...+..+. .|+||-++++.....+.....|..|--..+|......++.+...
T Consensus 428 ~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lr-vSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~ 505 (599)
T PRK13613 428 DPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVR-VARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE 505 (599)
T ss_pred CCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEE-ECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC
Confidence 2 2323555543 3343333331 11455554 89999999998876554344455554422332122234444332
Q ss_pred C-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 239 K-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 239 ~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
- ...+.+|..++..++...+.. .-..++++++ +|.
T Consensus 506 l~~v~~~~W~~~~sL~Vlg~~~~-~~~~v~~v~v-dG~ 541 (599)
T PRK13613 506 LEDVTDMSWAGDSQLVVLGREEG-GVQQARYVQV-DGS 541 (599)
T ss_pred CCccceeEEcCCCEEEEEeccCC-CCcceEEEec-CCc
Confidence 1 245667888876544443333 2234777777 454
|
|
| >PLN02310 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=83.54 E-value=1.4 Score=43.30 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCC-C-CCCceEEEEechhHHHHHHHHh
Q 008873 395 DQLTGAEWLIKQGL-A-KVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 395 D~~~~~~~l~~~~~-~-d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.+...++.|.+... - ..-+|.|.|||+||.+|+.++.
T Consensus 190 qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~ 228 (405)
T PLN02310 190 QVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAY 228 (405)
T ss_pred HHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHH
Confidence 34555555554311 1 1247999999999999988775
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.47 E-value=38 Score=31.38 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=54.3
Q ss_pred EEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEE
Q 008873 93 VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLH 172 (550)
Q Consensus 93 ~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~ 172 (550)
++-+|||.+.+..+. ...|=.+|..+|+.++.--..+. .|++. ...+|+-.|+.|. |. .|-++
T Consensus 67 vapapdG~VWft~qg----~gaiGhLdP~tGev~~ypLg~Ga-----~Phgi------v~gpdg~~Witd~-~~-aI~R~ 129 (353)
T COG4257 67 VAPAPDGAVWFTAQG----TGAIGHLDPATGEVETYPLGSGA-----SPHGI------VVGPDGSAWITDT-GL-AIGRL 129 (353)
T ss_pred cccCCCCceEEecCc----cccceecCCCCCceEEEecCCCC-----CCceE------EECCCCCeeEecC-cc-eeEEe
Confidence 466889976554321 22477889999998765322111 11111 1235555666654 33 67788
Q ss_pred eCCCceeec--ccc--cCeEEEEEEeEeecCCEEEEEEcC
Q 008873 173 DINGTCLGP--ITE--GDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 173 ~~~~~~~~~--lT~--~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
+.++.+.++ |+. .+-+.... .+++.| .|.|+...
T Consensus 130 dpkt~evt~f~lp~~~a~~nlet~-vfD~~G-~lWFt~q~ 167 (353)
T COG4257 130 DPKTLEVTRFPLPLEHADANLETA-VFDPWG-NLWFTGQI 167 (353)
T ss_pred cCcccceEEeecccccCCCcccce-eeCCCc-cEEEeecc
Confidence 877766553 332 22223333 377776 68999774
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=83.40 E-value=43 Score=35.22 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=25.2
Q ss_pred eCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 235 LTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 235 lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
++.+..-+.+.+||||++++.... ..+.+-++|+++.+
T Consensus 317 IPVGKsPHGV~vSPDGkylyVank---lS~tVSVIDv~k~k 354 (635)
T PRK02888 317 VPVPKNPHGVNTSPDGKYFIANGK---LSPTVTVIDVRKLD 354 (635)
T ss_pred EECCCCccceEECCCCCEEEEeCC---CCCcEEEEEChhhh
Confidence 344444677889999998865532 23578888876543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.14 E-value=20 Score=34.23 Aligned_cols=150 Identities=9% Similarity=0.061 Sum_probs=74.7
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE--EEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK--VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF 166 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~ 166 (550)
.+..+.++|-...|+-+.... .-|+++|+.++.+. .+.....+. -+|.|..|.|++-. .-
T Consensus 189 ti~svkfNpvETsILas~~sD---rsIvLyD~R~~~Pl~KVi~~mRTN~--------------IswnPeafnF~~a~-ED 250 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASD---RSIVLYDLRQASPLKKVILTMRTNT--------------ICWNPEAFNFVAAN-ED 250 (433)
T ss_pred ceeEEecCCCcchheeeeccC---CceEEEecccCCccceeeeeccccc--------------eecCccccceeecc-cc
Confidence 456678888777443332111 12889999888752 222222221 14567567666532 34
Q ss_pred cEEEEEeCCCceeecccccCeEEEE--EEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC---Cce
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQ--IVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG---KGK 241 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~--~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~---~~~ 241 (550)
..||.+|...- .++|-...-+++. -..+||-|+.++-.+-+.. ..||-++- +. -+.+.-. ...
T Consensus 251 ~nlY~~DmR~l-~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks---IRIf~~~~---~~-----SRdiYhtkRMq~V 318 (433)
T KOG0268|consen 251 HNLYTYDMRNL-SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS---IRIFPVNH---GH-----SRDIYHTKRMQHV 318 (433)
T ss_pred ccceehhhhhh-cccchhhcccceeEEEeccCCCcchhccccccce---EEEeecCC---Cc-----chhhhhHhhhhee
Confidence 67899885331 1222222212221 2248899987764433332 56665542 21 1122111 124
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEE
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCS 270 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 270 (550)
..+-||.|.+++ ++.|+-. .-.+|...
T Consensus 319 ~~Vk~S~Dskyi-~SGSdd~-nvRlWka~ 345 (433)
T KOG0268|consen 319 FCVKYSMDSKYI-ISGSDDG-NVRLWKAK 345 (433)
T ss_pred eEEEEeccccEE-EecCCCc-ceeeeecc
Confidence 455789998765 4444422 22455533
|
|
| >PLN03037 lipase class 3 family protein; Provisional | Back alignment and domain information |
|---|
Probab=82.99 E-value=1.5 Score=44.35 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCC-C-CCCceEEEEechhHHHHHHHHh
Q 008873 395 DQLTGAEWLIKQGL-A-KVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 395 D~~~~~~~l~~~~~-~-d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
.+.+.+..|.+... . ..-+|.|.|||+||.+|+.+|.
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~ 337 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAY 337 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHH
Confidence 34455555554311 1 1247999999999999988875
|
|
| >PLN02719 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=82.62 E-value=2 Score=43.32 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCC---CCCceEEEEechhHHHHHHHHh
Q 008873 394 EDQLTGAEWLIKQGLA---KVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~---d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
+++.+.++.|.++..- ..-+|.|.|||+||.+|+.+|.
T Consensus 277 eQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~ 317 (518)
T PLN02719 277 EQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAY 317 (518)
T ss_pred HHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHH
Confidence 4566667766664211 1247999999999999998775
|
|
| >PF15525 DUF4652: Domain of unknown function (DUF4652) | Back alignment and domain information |
|---|
Probab=82.53 E-value=31 Score=29.79 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=45.7
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEec-C--CCceEEEEEECCCCceEEEEE
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR-S--QTKLKVLKFDIKTGQRKVILV 130 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r-~--~~~~~l~~~~~~~g~~~~l~~ 130 (550)
-..||+.|+.+++...|.++..+.... +. .+-|-.|..+++..-.. + ....+||.+++.+|+...|+.
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~s--PK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYS--PK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccC--Cc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 367999999999998886652211111 12 35788887765544211 1 123479999999999999987
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=82.12 E-value=9.7 Score=39.46 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred ceEEEcCCCCeEEEEEEe
Q 008873 5 TGYWWSLDSKFIAFTQVD 22 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~ 22 (550)
..+.|||||++|+=++.|
T Consensus 576 T~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred EEEEECCCCcEEEEeecC
Confidence 457899999999888765
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.09 E-value=44 Score=31.14 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=112.7
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCC------CCCCCCeEEEEEEECCCCceE---E
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPF------AGASNVKVRLGVVSAAGGPVS---W 73 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~g~~~~~~~l~~~d~~~~~~~---~ 73 (550)
+.+-+.=|-||+.|++=.....|+..++++-. =+-.-.|.- -|.-+-.-. ||++.+.+.. +
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~haipl~s~--------WVMtCA~sPSg~~VAcGGLdN~Cs--iy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS--------WVMTCAYSPSGNFVACGGLDNKCS--IYPLSTRDAEGNVR 136 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccceeEEecCce--------eEEEEEECCCCCeEEecCcCceeE--EEecccccccccce
Confidence 44556668899999987766666555443210 000011111 122222233 4555543111 1
Q ss_pred EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceeeccCccccCCCCCcc
Q 008873 74 MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNLHDCFTPLDKGVTK 152 (550)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~ 152 (550)
+.- .+..-..|++.-.+.+|+.+| ..+.. ....+-|+++|+..+.+.. .++... . .+.| +
T Consensus 137 v~r-----~l~gHtgylScC~f~dD~~il-T~SGD----~TCalWDie~g~~~~~f~GH~gDV~s-l--sl~p-----~- 197 (343)
T KOG0286|consen 137 VSR-----ELAGHTGYLSCCRFLDDNHIL-TGSGD----MTCALWDIETGQQTQVFHGHTGDVMS-L--SLSP-----S- 197 (343)
T ss_pred eee-----eecCccceeEEEEEcCCCceE-ecCCC----ceEEEEEcccceEEEEecCCcccEEE-E--ecCC-----C-
Confidence 110 123445788888999987655 33222 2245557788876554432 121110 0 0111 0
Q ss_pred CCCcEEEEEccCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCC
Q 008873 153 YSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA 231 (550)
Q Consensus 153 ~~~~~~~~s~~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~ 231 (550)
+++ .|+|-. --..-++.|...+. .+-...++-++..+. +-|+|..+. ++.+++ ...+|-+.. +. +
T Consensus 198 ~~n--tFvSg~-cD~~aklWD~R~~~c~qtF~ghesDINsv~-ffP~G~afa-tGSDD~--tcRlyDlRa--D~-----~ 263 (343)
T KOG0286|consen 198 DGN--TFVSGG-CDKSAKLWDVRSGQCVQTFEGHESDINSVR-FFPSGDAFA-TGSDDA--TCRLYDLRA--DQ-----E 263 (343)
T ss_pred CCC--eEEecc-cccceeeeeccCcceeEeecccccccceEE-EccCCCeee-ecCCCc--eeEEEeecC--Cc-----E
Confidence 122 333311 01223444543333 333444455565554 788985443 444444 367774443 32 2
Q ss_pred CeeeCCC---CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 232 PVKLTNG---KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 232 ~~~lt~~---~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
....... .|..++.||..|+.|..-+.+ -...+.|...++..-.|.
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d----~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDD----FTCNVWDTLKGERVGVLA 312 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecC----CceeEeeccccceEEEee
Confidence 2232222 357888999999876544443 356667766666544444
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.98 E-value=66 Score=33.17 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=30.4
Q ss_pred EEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCCCeE-EEEEEecCCCceEEEEEECCCC
Q 008873 60 RLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNIL-TAQVLNRSQTKLKVLKFDIKTG 123 (550)
Q Consensus 60 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspDg~~-i~~~~~r~~~~~~l~~~~~~~g 123 (550)
.|.+|.+.||.- +.+.+ +.-+..++|+|.++. ++.++... .+++++..-|
T Consensus 423 tvriWEi~TgRcvr~~~~----------d~~I~~vaw~P~~~~~vLAvA~~~----~~~ivnp~~G 474 (733)
T KOG0650|consen 423 TVRIWEIATGRCVRTVQF----------DSEIRSVAWNPLSDLCVLAVAVGE----CVLIVNPIFG 474 (733)
T ss_pred cEEEEEeecceEEEEEee----------cceeEEEEecCCCCceeEEEEecC----ceEEeCcccc
Confidence 356678888754 33333 457888999999983 33332221 1666666655
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.13 E-value=10 Score=35.16 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=30.8
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 134 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~ 134 (550)
+..+..++||.||..++...-.. ++-+.|+.+|+..++-.+..+
T Consensus 72 ~~PvL~v~WsddgskVf~g~~Dk----~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 72 DGPVLDVCWSDDGSKVFSGGCDK----QAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred CCCeEEEEEccCCceEEeeccCC----ceEEEEccCCCeeeeeecccc
Confidence 44567789999997665554333 366678899988887766544
|
|
| >KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.09 E-value=19 Score=33.09 Aligned_cols=88 Identities=17% Similarity=0.038 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
.|+|| +||-...-. ...+..+.+++.+ -|..|.+.+. |.| -...+. .. +.++...+....++
T Consensus 24 ~P~ii-~HGigd~c~-----~~~~~~~~q~l~~~~g~~v~~lei-g~g-~~~s~l---~p------l~~Qv~~~ce~v~~ 86 (296)
T KOG2541|consen 24 VPVIV-WHGIGDSCS-----SLSMANLTQLLEELPGSPVYCLEI-GDG-IKDSSL---MP------LWEQVDVACEKVKQ 86 (296)
T ss_pred CCEEE-EeccCcccc-----cchHHHHHHHHHhCCCCeeEEEEe-cCC-cchhhh---cc------HHHHHHHHHHHHhc
Confidence 57766 699432211 0123345666665 4888888886 333 111111 11 34444444433333
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhh
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
...-++-+.++|.|.||.++-.++..
T Consensus 87 m~~lsqGynivg~SQGglv~Raliq~ 112 (296)
T KOG2541|consen 87 MPELSQGYNIVGYSQGGLVARALIQF 112 (296)
T ss_pred chhccCceEEEEEccccHHHHHHHHh
Confidence 21224568899999999999777654
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=81.00 E-value=80 Score=33.50 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=60.2
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEccCCc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASEKTGF 166 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~ 166 (550)
.+..|+|.++|- +..+ ++.....++.++--.+|+...+.. .|+...+ +.-+ ..+.|+ ++++.+.+|-
T Consensus 410 ~Lt~PS~d~~g~-vWtv-d~~~~~~~vl~v~~~~G~~~~V~~----~~l~g~~-I~~l----rvSrDG~RvAvv~~~~g~ 478 (599)
T PRK13613 410 RLTSPSWDGRGD-LWVV-DRDPADPRLLWLLQGDGEPVEVRT----PELDGHR-VVAV----RVARDGVRVALIVEKDGR 478 (599)
T ss_pred cccCCcCcCCCC-EEEe-cCCCCCceEEEEEcCCCcEEEeec----cccCCCE-eEEE----EECCCccEEEEEEecCCC
Confidence 467789999984 2222 443333333333334666654332 2443211 1111 224444 7777776665
Q ss_pred cEEEEEe--CC-Cceeecccc------cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 167 RHLYLHD--IN-GTCLGPITE------GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 167 ~~l~~~~--~~-~~~~~~lT~------~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
.+|++-- .+ .++ +.|+. +--.+.+. .|..++ .|+..+...+ ....++.+++ +|.
T Consensus 479 ~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~-~W~~~~-sL~Vlg~~~~-~~~~v~~v~v--dG~ 541 (599)
T PRK13613 479 RSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDM-SWAGDS-QLVVLGREEG-GVQQARYVQV--DGS 541 (599)
T ss_pred cEEEEEEEEeCCCCc-EEeeccEEeccCCCcccee-EEcCCC-EEEEEeccCC-CCcceEEEec--CCc
Confidence 5665532 22 222 34443 22233444 487665 5666554322 3578999998 665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.93 E-value=49 Score=30.99 Aligned_cols=115 Identities=11% Similarity=0.200 Sum_probs=63.4
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCcc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFR 167 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~ 167 (550)
.+++.+|+||.+.++.+.+.. .+|..++.+|.-.+++.-. +..+... + .+.+++ |+...+|...-
T Consensus 87 nvS~LTynp~~rtLFav~n~p---~~iVElt~~GdlirtiPL~---g~~DpE~-I-------eyig~n~fvi~dER~~~l 152 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKP---AAIVELTKEGDLIRTIPLT---GFSDPET-I-------EYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccceeeCCCcceEEEecCCC---ceEEEEecCCceEEEeccc---ccCChhH-e-------EEecCCEEEEEehhcceE
Confidence 478899999999887776554 3588888876555544321 1100000 0 112333 55555555543
Q ss_pred EEEEEeCCCceee----ccccc-----CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 168 HLYLHDINGTCLG----PITEG-----DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 168 ~l~~~~~~~~~~~----~lT~~-----~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
.++.++.++.... .++-+ +--..+.+ |++....|+|.-.++ | ..||.+..
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA-~d~~~~~l~~aKEr~-P--~~I~~~~~ 211 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLA-WDPVDHRLFVAKERN-P--IGIFEVTQ 211 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeee-cCCCCceEEEEEccC-C--cEEEEEec
Confidence 4445555543211 22222 22234554 999988888775544 4 67888775
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.68 E-value=66 Score=32.32 Aligned_cols=191 Identities=9% Similarity=0.075 Sum_probs=89.3
Q ss_pred cCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEE
Q 008873 48 AYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 127 (550)
Q Consensus 48 ~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~ 127 (550)
.|-..|+.+..+ -+||+..+-..+. +.+..-.+..+.+.-...+|+.++..+ +|.+..++++....
T Consensus 92 ~y~~sgG~~~~V--kiwdl~~kl~hr~--------lkdh~stvt~v~YN~~DeyiAsvs~gG----diiih~~~t~~~tt 157 (673)
T KOG4378|consen 92 LYEISGGQSGCV--KIWDLRAKLIHRF--------LKDHQSTVTYVDYNNTDEYIASVSDGG----DIIIHGTKTKQKTT 157 (673)
T ss_pred eeeeccCcCcee--eehhhHHHHHhhh--------ccCCcceeEEEEecCCcceeEEeccCC----cEEEEecccCcccc
Confidence 455555555443 3467774433221 112223345555655556666554332 46677777665332
Q ss_pred EEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 128 ILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
-+......-.-. -.|++ +..-++.....+|.-+||=+.--......+..+.-...++ +++|....|+.+.-
T Consensus 158 ~f~~~sgqsvRl-l~ys~-------skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi-cfspsne~l~vsVG 228 (673)
T KOG4378|consen 158 TFTIDSGQSVRL-LRYSP-------SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI-CFSPSNEALLVSVG 228 (673)
T ss_pred ceecCCCCeEEE-eeccc-------ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc-eecCCccceEEEec
Confidence 222211100000 01212 1222333333356556665432111111222222223344 48888766665544
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
-+ ..|+..|. ... +-..+|+-..-...++|+++|.+|+.--+. .+|+.+|+...
T Consensus 229 ~D----kki~~yD~--~s~---~s~~~l~y~~Plstvaf~~~G~~L~aG~s~----G~~i~YD~R~~ 282 (673)
T KOG4378|consen 229 YD----KKINIYDI--RSQ---ASTDRLTYSHPLSTVAFSECGTYLCAGNSK----GELIAYDMRST 282 (673)
T ss_pred cc----ceEEEeec--ccc---cccceeeecCCcceeeecCCceEEEeecCC----ceEEEEecccC
Confidence 32 46666676 211 123455544345667899999777654333 47888887533
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.51 E-value=62 Score=31.85 Aligned_cols=185 Identities=14% Similarity=0.034 Sum_probs=92.3
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEe---cCC----CceEEEEEECCCCceEEEEEe
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN---RSQ----TKLKVLKFDIKTGQRKVILVE 131 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~---r~~----~~~~l~~~~~~~g~~~~l~~~ 131 (550)
-.||.||.++.+-+++....+|++.. ....++| |.|.+++|--. -.+ .-.++|++++.+.+..+|-..
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs----shq~va~-~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~ 172 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS----SHQAVAV-PSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG 172 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc----cceeEEe-ccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC
Confidence 46999999998888876654432111 1122333 55554444211 111 234799999999888777542
Q ss_pred ecCceeeccCccccCCCCCccCCCcEEEE--EccCC----ccEEEEEeCCCceeecccc-cCeE--EEE-EEeEeecCCE
Q 008873 132 ELDSWVNLHDCFTPLDKGVTKYSGGFIWA--SEKTG----FRHLYLHDINGTCLGPITE-GDWM--VEQ-IVGVNEASGQ 201 (550)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~g----~~~l~~~~~~~~~~~~lT~-~~~~--~~~-~~~~s~dg~~ 201 (550)
.++. ...-.....|...-|+|- .|.++ +.+||.+++++=++..|.. |.+. .++ ....+|+|..
T Consensus 173 g~PS-------~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 173 GGPS-------PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred CCCC-------CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence 2110 000000001111113331 22222 4799999998866655543 3221 111 1236788876
Q ss_pred EEEEEc---------CCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-----C-ceEEEEECCCCCEEEEe
Q 008873 202 VYFTGT---------LDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-----K-GKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 202 l~f~~~---------~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-----~-~~~~~~~s~dg~~l~~~ 256 (550)
+++-+- ..+.....+|.++.. +|....-.-.++... + -..++.+.++++.++|-
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~-~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FG 314 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPE-DGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFG 314 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCC-cCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEec
Confidence 655542 234445677777763 322111112222211 1 14566778888887763
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=80.48 E-value=8.1 Score=29.04 Aligned_cols=53 Identities=9% Similarity=0.005 Sum_probs=33.8
Q ss_pred CeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC
Q 008873 57 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK 121 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~ 121 (550)
+..+|..+|..+++++.+--+ -.+-..++.|||++.++++-.- ..+|.++-++
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~---------L~fpNGVals~d~~~vlv~Et~---~~Ri~rywl~ 87 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDG---------LYFPNGVALSPDESFVLVAETG---RYRILRYWLK 87 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEE---------ESSEEEEEE-TTSSEEEEEEGG---GTEEEEEESS
T ss_pred CCcCEEEEECCCCeEEEehhC---------CCccCeEEEcCCCCEEEEEecc---CceEEEEEEe
Confidence 457899999999998876322 2345678999999977665322 2245555544
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase | Back alignment and domain information |
|---|
Probab=80.43 E-value=2.6 Score=40.72 Aligned_cols=62 Identities=16% Similarity=0.046 Sum_probs=48.7
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHc---------------C-----CC-eEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAA---------------R-----KP-YEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~---------------~-----~~-~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
.++||..|..|.+|+....+++.++|.-. | .+ ..++++-++||... ......++.+.
T Consensus 234 i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~--~qP~~al~m~~ 311 (319)
T PLN02213 234 YRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFIMFQ 311 (319)
T ss_pred ceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC--cCHHHHHHHHH
Confidence 58999999999999999999999888521 1 12 77777889999883 36777788888
Q ss_pred HHHHH
Q 008873 544 EFIER 548 (550)
Q Consensus 544 ~fl~~ 548 (550)
+|+..
T Consensus 312 ~fi~~ 316 (319)
T PLN02213 312 RWISG 316 (319)
T ss_pred HHHcC
Confidence 88753
|
|
| >PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function | Back alignment and domain information |
|---|
Probab=80.10 E-value=9.2 Score=36.08 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=32.9
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
..+......+..+..+|.+.. -..++|.|+|+|-|++.|-.++..
T Consensus 68 a~g~g~~~~I~~ay~~l~~~~-~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 68 AFGWGIEARIRDAYRFLSKNY-EPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred hhhcchHHHHHHHHHHHHhcc-CCcceEEEEecCccHHHHHHHHHH
Confidence 333344567777888887664 356789999999999999777653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 550 | ||||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 2e-80 | ||
| 2dcm_A | 706 | The Crystal Structure Of S603a Mutated Prolyl Tripe | 8e-54 | ||
| 2d5l_A | 706 | Crystal Structure Of Prolyl Tripeptidyl Aminopeptid | 8e-54 | ||
| 2z3w_A | 706 | Prolyl Tripeptidyl Aminopeptidase Mutant E636a Leng | 2e-53 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 1e-35 | ||
| 1n1m_A | 728 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 3e-33 | ||
| 2rgu_A | 734 | Crystal Structure Of Complex Of Human Dpp4 And Inhi | 3e-33 | ||
| 2jid_A | 736 | Human Dipeptidyl Peptidase Iv In Complex With 1-(3, | 3e-33 | ||
| 2rip_A | 729 | Structure Of Dppiv In Complex With An Inhibitor Len | 3e-33 | ||
| 1x70_A | 728 | Human Dipeptidyl Peptidase Iv In Complex With A Bet | 3e-33 | ||
| 1r9n_A | 739 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 3e-33 | ||
| 2bgr_A | 738 | Crystal Structure Of Hiv-1 Tat Derived Nonapeptides | 3e-33 | ||
| 2onc_A | 731 | Crystal Structure Of Human Dpp-4 Length = 731 | 3e-33 | ||
| 3q8w_A | 732 | A B-Aminoacyl Containing Thiazolidine Derivative An | 3e-33 | ||
| 2g5p_A | 726 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 3e-33 | ||
| 3nox_A | 753 | Crystal Structure Of Human Dpp-Iv In Complex With S | 3e-33 | ||
| 1r9m_A | 733 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 3e-33 | ||
| 1j2e_A | 740 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 3e-33 | ||
| 1pfq_A | 731 | Crystal Structure Of Human Apo Dipeptidyl Peptidase | 4e-33 | ||
| 3ccb_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A B | 4e-33 | ||
| 2qjr_A | 748 | Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf | 4e-33 | ||
| 2qt9_A | 766 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 4e-33 | ||
| 4a5s_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A N | 6e-33 | ||
| 1u8e_A | 728 | Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Leng | 7e-33 | ||
| 3qbj_A | 748 | Crystal Structure Of Dipeptidyl Peptidase Iv In Com | 3e-32 | ||
| 1orv_A | 728 | Crystal Structure Of Porcine Dipeptidyl Peptidase I | 5e-32 | ||
| 1xfd_A | 723 | Structure Of A Human A-Type Potassium Channel Accel | 2e-31 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 1e-28 | ||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 6e-14 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 7e-14 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 7e-14 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 2e-13 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 2e-13 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 5e-13 | ||
| 3azo_A | 662 | Crystal Structure Of Puromycin Hydrolase Length = 6 | 8e-09 | ||
| 3azp_A | 662 | Crystal Structure Of Puromycin Hydrolase S511a Muta | 5e-08 |
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl Aminopeptidase Complexed With Substrate Length = 706 | Back alignment and structure |
|
| >pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase From Porphyromonas Gingivalis Length = 706 | Back alignment and structure |
|
| >pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Length = 706 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
| >pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN INHIBITOR Length = 728 | Back alignment and structure |
|
| >pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor Length = 734 | Back alignment and structure |
|
| >pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4- Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine Length = 736 | Back alignment and structure |
|
| >pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor Length = 729 | Back alignment and structure |
|
| >pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino Acid Inhibitor Length = 728 | Back alignment and structure |
|
| >pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution Length = 739 | Back alignment and structure |
|
| >pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides Tat(1-9) Bound To The Active Site Of Dipeptidyl Peptidase Iv (Cd26) Length = 738 | Back alignment and structure |
|
| >pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4 Length = 731 | Back alignment and structure |
|
| >pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv Complex Length = 732 | Back alignment and structure |
|
| >pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv) Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor 21ac Length = 726 | Back alignment and structure |
|
| >pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With Sa-(+)-(6- (Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1, 2-A]pyrimidin- 2-Yl)(Morpholino)methanone Length = 753 | Back alignment and structure |
|
| >pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1 Ang. Resolution. Length = 733 | Back alignment and structure |
|
| >pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv Length = 740 | Back alignment and structure |
|
| >pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv / Cd26 Length = 731 | Back alignment and structure |
|
| >pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Benzimidazole Derivative Length = 740 | Back alignment and structure |
|
| >pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf Length = 748 | Back alignment and structure |
|
| >pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl Cyclohexylalanine Inhibitor Length = 766 | Back alignment and structure |
|
| >pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval Heterocyclic Dpp4 Inhibitor Length = 740 | Back alignment and structure |
|
| >pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Length = 728 | Back alignment and structure |
|
| >pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With Inhibitor Length = 748 | Back alignment and structure |
|
| >pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) Length = 728 | Back alignment and structure |
|
| >pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase Family Length = 723 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662 | Back alignment and structure |
|
| >pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 550 | |||
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 0.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 0.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 1e-180 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-177 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 1e-175 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 9e-58 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 1e-55 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 5e-42 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 3e-26 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 4e-25 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 1e-24 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 2e-24 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 2e-23 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 4e-21 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 1e-18 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 3e-18 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 1e-16 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 1e-15 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 4e-14 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 2e-13 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 3e-13 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 4e-11 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 6e-11 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 2e-10 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 6e-10 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 7e-10 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 7e-09 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 7e-09 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 1e-08 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 2e-08 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 5e-08 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 2e-07 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 2e-07 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 6e-07 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 7e-07 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 2e-06 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 2e-06 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 2e-06 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 1e-05 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-05 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 7e-05 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 4e-04 |
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 575 bits (1485), Expect = 0.0
Identities = 159/556 (28%), Positives = 253/556 (45%), Gaps = 35/556 (6%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
+ G +WS +AF ++D S + I+ + YP AG + V
Sbjct: 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD---YHPLEAESKPLYYPMAGTPSHHVT 236
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWM-HGNILTAQVLNRSQTKLKVLKFD 119
+G+ A G ++ E++L ++W NIL +NR+Q + KV +D
Sbjct: 237 VGIYHLATGKTVYLQTG------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYD 290
Query: 120 IKTGQRKVILVEELDS-WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC 178
+TG+ L E D +V T L + FIW S + G+ HLYL+D G
Sbjct: 291 AETGRFVRTLFVETDKHYVEPLHPLTFLPGS----NNQFIWQSRRDGWNHLYLYDTTGRL 346
Query: 179 LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238
+ +T+G+W V G + ++YF T PLE H YC + LT
Sbjct: 347 IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG------KTKDLTPE 400
Query: 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPP 298
G H L + +D S P ++ + ++ GS L + P +
Sbjct: 401 SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPD-----TGYAMPEI 455
Query: 299 DIVQIQANDG-TVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR 354
I A DG T LY L P D ++ Y ++ VYGGP QLV +W ++V
Sbjct: 456 RTGTIMAADGQTPLYYKLTMPLHFDPAK----KYPVIVYVYGGPHAQLVTKTWRSSVGGW 511
Query: 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHI 414
Y+ KG V+ +D+RG+A RG FE I G+ + DQ+ G ++L Q I
Sbjct: 512 DIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRI 571
Query: 415 GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYS 474
G++GWSYGG+++ + DVF+ V+G PV W+ Y Y E+Y P E+P GY+ +
Sbjct: 572 GVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQENPEGYDAA 631
Query: 475 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRD 534
+++ +KG+L+L+HG ID V ++H+ ++A V AR + ++P H D
Sbjct: 632 NLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGP-D 690
Query: 535 RIYMEERIWEFIERTL 550
R+++ E I + L
Sbjct: 691 RVHLYETITRYFTDHL 706
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 573 bits (1478), Expect = 0.0
Identities = 190/560 (33%), Positives = 287/560 (51%), Gaps = 38/560 (6%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
MDR TGYWW+ D IA+ ++D S +P + + YP AG +NV+V+
Sbjct: 208 MDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADR---TDVIEQRYPAAGDANVQVK 264
Query: 61 LGVVS-AAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD 119
LGV+S A W+DL + YLARVNW L+ Q +R Q KL +++
Sbjct: 265 LGVISPAEQAQTQWIDLG------KEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVT 318
Query: 120 IKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL 179
+ + Q++V+ E +WV LH+ LD G +W+SE+TGF+HLY D G
Sbjct: 319 LASNQQRVLAHETSPTWVPLHNSLRFLD------DGSILWSSERTGFQHLYRIDSKGKAA 372
Query: 180 GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239
+T G+W V++++ V+E +G YF ++ ES +Y L P +L+
Sbjct: 373 -ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG------QPQRLSKAP 425
Query: 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLE--- 296
G H A N +VD + +PP+I L +G + L E L P+ +
Sbjct: 426 GMHSASFARNASVYVDSWSNNSTPPQIELFRA-NGEKIATLVENDLADPKHPYARYREAQ 484
Query: 297 -PPDIVQIQANDG-TVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
P + + A DG T L ++ KP D ++ Y + VYGGP Q V DSW
Sbjct: 485 RPVEFGTLTAADGKTPLNYSVIKPAGFDPAK----RYPVAVYVYGGPASQTVTDSWPGRG 540
Query: 352 D-MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAK 410
D + QYL +G +V+ LDNRGT RRG F ++ G ++ DQL G WL +Q
Sbjct: 541 DHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVD 600
Query: 411 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 470
IG+ GWS GGY++ + LA+ D + C V+GAPVT W YD+ YTE+YM LP+ + G
Sbjct: 601 PARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYMDLPARNDAG 660
Query: 471 YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530
Y + V+ H+ ++ LLL+HGM D+NV F ++ L++AL +P+E++ +P +H
Sbjct: 661 YREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLS 720
Query: 531 RHRDRIYMEERIWEFIERTL 550
D ++ F+ R L
Sbjct: 721 GA-DALHRYRVAEAFLGRCL 739
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 524 bits (1350), Expect = e-180
Identities = 133/562 (23%), Positives = 227/562 (40%), Gaps = 24/562 (4%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
+ +WWS D +A+ ++ S +P + S + + + YP AG+ N +
Sbjct: 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV--KPYHYPKAGSENPSIS 229
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 120
L V+ G + D E Y+ V W + LNR+Q + D
Sbjct: 230 LHVIGLNGPTHDLEMMPPD--DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287
Query: 121 KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLH-------D 173
TG +E ++W++ + K K+ FI A + G Y +
Sbjct: 288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF--FFIRAIPQGGRGKFYHITVSSSQPN 345
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPV 233
+ + IT GDW V +I+ +E ++YF T D P LY A ++N +
Sbjct: 346 SSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC- 404
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRL 293
L A H+M F+ + P + + D + L I
Sbjct: 405 DLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDKKKMFDLETNEHVKKAINDR 463
Query: 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM 353
Q+ + I+ +D L + KP + Y L+ V G P Q V + + V
Sbjct: 464 QMPKVEYRDIEIDDYN-LPMQILKPA-TFTDTTHYPLLLVVDGTPGSQSVAEKF--EVSW 519
Query: 354 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 413
+ S G +V K D RG+ +G K ++ G ++ +DQ+ ++K+
Sbjct: 520 ETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTR 579
Query: 414 IGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPV 469
+ ++G YGGYLS L + F C + +P+T + Y + ++E+Y+GL D
Sbjct: 580 VAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNR 639
Query: 470 GYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528
YE + V H V + + + L++H DE +HF+HTA LI L+ + Y + I+PDE H
Sbjct: 640 AYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHY 699
Query: 529 PRRHRDRIYMEERIWEFIERTL 550
+ ++ I F
Sbjct: 700 FTSSSLKQHLYRSIINFFVECF 721
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 518 bits (1335), Expect = e-177
Identities = 129/566 (22%), Positives = 221/566 (39%), Gaps = 26/566 (4%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+
Sbjct: 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK 229
Query: 61 LGVVSAAGGPVSWMDLQ---CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQT--KLKV 115
VV+ + YL V W ++ Q L R Q + +
Sbjct: 230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDI 289
Query: 116 LKFDIKTGQRKVILVEEL-----DSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLY 170
+D +G+ ++ + WV P + + S + G+RH+
Sbjct: 290 CDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH--FTLDGNSFYKIISNEEGYRHIC 347
Query: 171 LHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230
I+ IT+G W V I + P +LY +L T
Sbjct: 348 YFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCL 407
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
+ + + + P L S + + L + +
Sbjct: 408 SCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH-SSVNDKGLRVLEDNSALDKML 466
Query: 291 KRLQLEPPDIVQIQANDGTVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQLVCDSW 347
+ +Q+ P + + T + + P D+S+ Y L+ VY GPC Q +
Sbjct: 467 QNVQM-PSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKADTVF 521
Query: 348 INTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407
++ ++ I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 522 --RLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMG 579
Query: 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL--PS 465
I ++GWSYGGY++++ L VF+C ++ APV+ W+ YD+ YTE+YMGL P
Sbjct: 580 FVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPE 639
Query: 466 EDPVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
++ Y S+VM K + LL+HG D+NVHF+ +A++ ALV ++ + + D
Sbjct: 640 DNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTD 699
Query: 525 ERHMPRRHRDRIYMEERIWEFIERTL 550
E H ++ + FI++
Sbjct: 700 EDHGIASSTAHQHIYTHMSHFIKQCF 725
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 512 bits (1319), Expect = e-175
Identities = 131/564 (23%), Positives = 232/564 (41%), Gaps = 27/564 (4%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
+ K WWS + KF+A+ + + ++IP + G + YP AGA N VR
Sbjct: 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRT--INIPYPKAGAKNPVVR 225
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 120
+ ++ + Y + + W+ + Q L R Q + D
Sbjct: 226 IFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDF 285
Query: 121 KTGQRK-------VILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHD 173
+ + + E W TP+ + S+K G++H++
Sbjct: 286 REDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY--DAISYYKIFSDKDGYKHIHYIK 343
Query: 174 INGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY-PDWNHTLEAP 232
IT G W I V + S + P ++Y + +
Sbjct: 344 DTVENAIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC 403
Query: 233 VKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKR 292
+ A + + P L + + L E +K
Sbjct: 404 HLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLH-DGRTDQEIKILEENKELENALKN 462
Query: 293 LQLEPPDIVQIQANDGTVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQLVCDSWIN 349
+QL +I +++ D L+ + P D S+ Y LI VYGGPC Q V +
Sbjct: 463 IQLPKEEIKKLEV-DEITLWYKMILPPQFDRSK----KYPLLIQVYGGPCSQSVRSVF-- 515
Query: 350 TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409
V+ + +G+++ +D RGTA +G K ++ G + EDQ+T I+ G
Sbjct: 516 AVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFI 575
Query: 410 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSED-- 467
I ++GWSYGGY+S++ LA +F+C ++ APV+SW+ Y + YTE++MGLP++D
Sbjct: 576 DEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTKDDN 635
Query: 468 PVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 526
Y+ S+VM + LL+HG D+NVHF+++A++ ALV A+ ++ + + D+
Sbjct: 636 LEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQN 695
Query: 527 HMPRRHRDRIYMEERIWEFIERTL 550
H ++ + F+++
Sbjct: 696 HGLSGL-STNHLYTHMTHFLKQCF 718
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 9e-58
Identities = 103/560 (18%), Positives = 189/560 (33%), Gaps = 61/560 (10%)
Query: 5 TGYWWSLDSKFIAFTQV-DSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGV 63
+ I V +E ++ + + + +
Sbjct: 67 VLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVF 126
Query: 64 VSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG 123
A V+ L GG + V+ + G+++ + ++ + ++ +G
Sbjct: 127 TGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAG-LGFFGGGRVSLFTSNLSSG 185
Query: 124 QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPIT 183
+V S+ + +P E L D + +
Sbjct: 186 GLRV-FDSGEGSFSSAS--ISP--------GMKVTAGLETAREARLVTVDPRDGSVEDLE 234
Query: 184 EGDWMVEQIVGVNEAS------GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237
G++ +G + ++ D +EAP
Sbjct: 235 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-------SAVFIDG-ERVEAP----- 281
Query: 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEP 297
+G H V+ + V H SL +PPRI+ L G +L +P R +
Sbjct: 282 -QGNHGRVVLWRGK-LVTSHTSLSTPPRIVS--LPSGEPLLEG-----GLPEDLRRSIAG 332
Query: 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQY 357
+V +++ DG+ + + + P P T++ V+GGP + DS + D A
Sbjct: 333 SRLVWVESFDGSRVPTYVLESGR---APTPGPTVVLVHGGPFAE---DSD--SWDTFAAS 384
Query: 358 LRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLY 417
L + G V + RG+ G ++ I + + ED A W + GLA + +
Sbjct: 385 LAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIM 442
Query: 418 GWSYGGYLSAITLARFPDVFQCAVSGAPVTSW-------DGYDTFYTEKYMGLPSEDPVG 470
G+SYGGY++ L P +F+ V+GA V W D + E+ G
Sbjct: 443 GYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG---GSREI 499
Query: 471 YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530
S ++HV ++K L L+H + RL+ L+A K +E I PD H
Sbjct: 500 MRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAIN 559
Query: 531 RHRDRIYMEERIWEFIERTL 550
D + + F+
Sbjct: 560 TMEDAVKILLPAVFFLATQR 579
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 1e-55
Identities = 90/534 (16%), Positives = 160/534 (29%), Gaps = 60/534 (11%)
Query: 44 QEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNY----------DEEYLARV 93
E+ G S+V+ L V G + +D + D +
Sbjct: 148 AEEFTGE--GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWL 205
Query: 94 NWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKY 153
W H + T+LK + + + P
Sbjct: 206 AWDHPR------MPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-------- 251
Query: 154 SGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 213
G I A+++TG+ +L+ D + + A PL
Sbjct: 252 DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF--------AGPLWTPGMRWFAPLA 303
Query: 214 SHLYCAKLYPDWNHTL------EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRIL 267
+ L V + A L + V S + ++
Sbjct: 304 NGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363
Query: 268 LCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPP- 326
G + P I A DG ++ +Y P + P
Sbjct: 364 ELDTVTGRARTIGARHT---DPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPA 420
Query: 327 --PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384
++ +GGP + +D+ Y S+GI V ++ G+ G + +
Sbjct: 421 DELPPYVVMAHGGPTSR---VPA--VLDLDVAYFTSRGIGVADVNYGGSTGYGRAYRERL 475
Query: 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA 444
+ G +D ED A L ++G A + + G S GG+ +A +L DV+ C
Sbjct: 476 RGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLV-STDVYACGTVLY 534
Query: 445 PVTSWDG--------YDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE 496
PV G +++ Y + +G E P Y + + +++ LL+ G+ D
Sbjct: 535 PVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDP 594
Query: 497 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550
R + A+ P+ L F E H RR + E +
Sbjct: 595 VCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKETMVRALEAELSLYAQVF 648
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 5e-42
Identities = 41/253 (16%), Positives = 76/253 (30%), Gaps = 23/253 (9%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 360
++I L G L P ++ V+G Q + +RA+
Sbjct: 9 IEIPV-GQDELSGTLLTPT-------GMPGVLFVHGWGGSQ-------HHSLVRAREAVG 53
Query: 361 KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWS 420
G + D RG ++ + + +D + L I + G S
Sbjct: 54 LGCICMTFDLRGHEGYASMRQSVTRAQ----NLDDIKAAYDQLASLPYVDAHSIAVVGLS 109
Query: 421 YGGYLSAITLARFPDVFQCAVSGAPVTS--WDG-YDTFYTEKYMGLPSEDPVGYEYSSVM 477
YGGYLSA+ P + S A WD + + + + + +
Sbjct: 110 YGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLAL 169
Query: 478 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIY 537
+ KG +LLV D V +A A + + H +
Sbjct: 170 AACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNA-RSLTSRVIAGADHALSVKEHQQE 228
Query: 538 MEERIWEFIERTL 550
+ +++ +
Sbjct: 229 YTRALIDWLTEMV 241
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 46/266 (17%), Positives = 81/266 (30%), Gaps = 39/266 (14%)
Query: 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG 362
DG L L P + P I ++G S + + L G
Sbjct: 5 YIDCDGIKLNAYLDMPKNN---PEKCPLCIIIHGFTG-----HSEERHIVAVQETLNEIG 56
Query: 363 ILVWKLDNRGTARRGLKFE-ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSY 421
+ + D G + KFE ++ + L ++ K V I + G S
Sbjct: 57 VATLRADMYGHGKSDGKFEDHTLFKW-----LTNILAVVDYAKKLD--FVTDIYMAGHSQ 109
Query: 422 GGYLSAITLARFPDVFQCAVSGAPVTS-----------WDGYDTFYTEKYMGLPSEDPVG 470
GG + A D+ + + +P +D + +
Sbjct: 110 GGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLK 169
Query: 471 YEY------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
Y V V K +L+VHG DE V + + K +++ P
Sbjct: 170 GNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQY----KNCKLVTIPG 225
Query: 525 ERHMPRRHRDRIYMEERIWEFIERTL 550
+ H H + + E + EF+ +
Sbjct: 226 DTHCYDHHLELVT--EAVKEFMLEQI 249
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 46/285 (16%), Positives = 79/285 (27%), Gaps = 59/285 (20%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 360
+ G ++ KP + LI +G W + +
Sbjct: 85 LYFTGVRGARIHAKYIKPK----TEGKHPALIRFHGYSSNS---GDWND-----KLNYVA 132
Query: 361 KGILVWKLDNRGTARRGLKFEASIKHNCG----------------RIDAEDQLTGAEWLI 404
G V +D RG + + R D A ++
Sbjct: 133 AGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVM 192
Query: 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 464
+G+ G S GG LS A P V VS P S Y +
Sbjct: 193 NMPEVDEDRVGVMGPSQGGGLSLACAALEPRVR-KVVSEYPFLSD--YKRVWDLDLAKNA 249
Query: 465 SEDPVGY------------------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL 506
++ Y Y V + ++KG +L+ G++D+ + +
Sbjct: 250 YQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVC---PPSTV 306
Query: 507 INALVAARKPYEILIFPDERH-MPRRHRDRIYMEERIWEFIERTL 550
A + +I ++PD H R D +F+
Sbjct: 307 FAAYNNIQSKKDIKVYPDYGHEPMRGFGDLAM------QFMLELY 345
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 1e-24
Identities = 43/268 (16%), Positives = 75/268 (27%), Gaps = 44/268 (16%)
Query: 282 EQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ 341
+ L + +R PP + + G V L+ P P I ++G
Sbjct: 118 GRLLCQAQHERH-FLPPGVWRQSVRAGRV-RATLFLPPGPGPFPGI----IDIFGIG--- 168
Query: 342 LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 401
++ RA L G L + I E
Sbjct: 169 ------GGLLEYRASLLAGHGFATLALAYYNFEDLPNNMD--------NISLEYFEEAVC 214
Query: 402 WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 461
++++ K IGL G S G + + +V S + +
Sbjct: 215 YMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISGNTAINYKHSSIP 274
Query: 462 GLPS-------------------EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH 502
L VG + M + K +G +LL+ G D N
Sbjct: 275 PLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSEL 334
Query: 503 TARLINALVAARK--PYEILIFPDERHM 528
A+ ++ + A +I+ +P H
Sbjct: 335 YAQTVSERLQAHGKEKPQIICYPGTGHY 362
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 43/279 (15%), Positives = 77/279 (27%), Gaps = 50/279 (17%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 360
+ ++ + G PD P+ ++ +G D I+
Sbjct: 59 LTYKSFGNARITGWYAVPD----KEGPHPAIVKYHGYNASY---DGEIH----EMVNWAL 107
Query: 361 KGILVWKLDNRGTARRGLKFEASIKHNCG--------------RIDAEDQLTGAEWLIKQ 406
G + + RG R + H G R D + E +
Sbjct: 108 HGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSF 167
Query: 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW--------DGYDTFYTE 458
IG+ G S GG L+ A AV+ P S
Sbjct: 168 DEVDETRIGVTGGSQGGGLTIAAAALSDIPK-AAVADYPYLSNFERAIDVALEQPYLEIN 226
Query: 459 KY---MGLPSEDPVGYE---YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 512
+ G P + + Y +M+ ++K +L+ G+ID+ N L
Sbjct: 227 SFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHL-- 284
Query: 513 ARKPYEILIFPDERH-MPRRHRDRIYMEERIWEFIERTL 550
E+ ++ H + F ++ L
Sbjct: 285 -ETKKELKVYRYFGHEYIPAFQTEKL------AFFKQIL 316
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 2e-23
Identities = 45/268 (16%), Positives = 75/268 (27%), Gaps = 44/268 (16%)
Query: 282 EQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ 341
+ L R +R L P V+ + + G L+ P E P + ++G
Sbjct: 134 GRLLCQTRHERYFLPPG--VRREPVRVGRVRGTLFLPPEPGPFPGI----VDMFGTG--- 184
Query: 342 LVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 401
++ RA L KG V L E + E
Sbjct: 185 ------GGLLEYRASLLAGKGFAVMALAYYNYEDLPKTME--------TLHLEYFEEAMN 230
Query: 402 WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 461
+L+ K +GL G S GG L + + V V + G + E
Sbjct: 231 YLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLP 290
Query: 462 GLPS-------------------EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHF-R 501
+ P+ V + + L + G D N
Sbjct: 291 PVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEF 350
Query: 502 HTARLINALVAARKP-YEILIFPDERHM 528
+ L A + +I+ +P+ H
Sbjct: 351 YANEACKRLQAHGRRKPQIICYPETGHY 378
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 94.4 bits (234), Expect = 4e-21
Identities = 35/281 (12%), Positives = 71/281 (25%), Gaps = 49/281 (17%)
Query: 283 QPLTVPRIKRLQLEPPDIVQIQ---ANDGTVLYGALYKP---DESRYGPPPYKTLISVYG 336
+P T + L D + G + L+ P + R Y ++ ++G
Sbjct: 127 EPFTSKQTDEKHLIIDDFLAFTFKDPETGVEIPYRLFVPKDVNPDR----KYPLVVFLHG 182
Query: 337 GP------CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 390
+Q+ + V + +Y V + F
Sbjct: 183 AGERGTDNYLQVAGNRG-AVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFNPE 241
Query: 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450
+ L+ + I + G S GGY + + FP++F A+
Sbjct: 242 KPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS 301
Query: 451 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 510
E+ +P + + H D V ++ L+ L
Sbjct: 302 -----KVERIKDIP----------------------IWVFHAEDDPVVPVENSRVLVKKL 334
Query: 511 VAARKPYEILIFPDERHMPRRHR-----DRIYMEERIWEFI 546
+ Y + E++
Sbjct: 335 AEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWL 375
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 1e-18
Identities = 39/298 (13%), Positives = 72/298 (24%), Gaps = 52/298 (17%)
Query: 288 PRIKRLQLEPPDI----VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV 343
P +R++ + V G + G L P ++ G
Sbjct: 54 PVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVPKL---EEEKLPCVVQYIGYN----- 105
Query: 344 CDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC------------GRI 391
+ S G + + +D RG LK + G +
Sbjct: 106 ---GGRGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGIL 162
Query: 392 DAEDQ---------LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 442
D + E I + G S GG ++ A +
Sbjct: 163 DPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAK-ALLC 221
Query: 443 GAPVTSW---------DGYDTFYTEKYMGLPSEDPVGYE---YSSVMHHVHKMKGKLLLV 490
P T ++ + + Y ++ + K L
Sbjct: 222 DVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFS 281
Query: 491 HGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548
G++D N P EI I+P H + + + + E+
Sbjct: 282 VGLMDNICPPSTVFAAYNYY---AGPKEIRIYPYNNHEGGGSFQAVEQVKFLKKLFEK 336
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 3e-18
Identities = 40/253 (15%), Positives = 76/253 (30%), Gaps = 32/253 (12%)
Query: 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVW 366
DG + + P+ GP P+ +I + G +S + +G+
Sbjct: 135 DGIPMPVYVRIPE----GPGPHPAVIMLGGL-------ESTKEESFQMENLVLDRGMATA 183
Query: 367 KLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLS 426
D G + + D LT E + IG+ G S GG +
Sbjct: 184 TFDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRN------DAIGVLGRSLGGNYA 237
Query: 427 AITLARFPDVFQCAVSGAPVTSWDGYDTF---------YTEKYMGLPSEDPVGYEYSSVM 477
+ A P +S + D +D Y K L +
Sbjct: 238 LKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETR 296
Query: 478 HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIY 537
+ ++ ++HG+ DE V ++ + A +++ D H R
Sbjct: 297 DVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAEHL--NLVVEKDGDHCCHNLGIRPR 353
Query: 538 MEERIWEFIERTL 550
+ +++ L
Sbjct: 354 --LEMADWLYDVL 364
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 1e-16
Identities = 33/230 (14%), Positives = 58/230 (25%), Gaps = 19/230 (8%)
Query: 325 PPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384
P L++++G + + +G L+ D R +S
Sbjct: 21 EAPKALLLALHGLQGSKEHILAL-------LPGYAERGFLLLAFDAPRHGEREGPPPSSK 73
Query: 385 KHNCGRIDAEDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440
L E + + L G S G +++ + LA
Sbjct: 74 SPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVL 133
Query: 441 VSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHF 500
G+ + + Y+ LL +HG D V
Sbjct: 134 AF-----IGSGFPMKLPQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPL 188
Query: 501 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550
+ + AL + F +E H M F+E L
Sbjct: 189 ARMEKTLEALRPHYPEGRLARFVEEGA---GHTLTPLMARVGLAFLEHWL 235
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 1e-15
Identities = 39/263 (14%), Positives = 79/263 (30%), Gaps = 41/263 (15%)
Query: 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV 365
DG L G +P Y I +G + + + A LR + I
Sbjct: 29 RDGLQLVGTREEPFG-----EIYDMAIIFHG-----FTANRNTSLLREIANSLRDENIAS 78
Query: 366 WKLDNRGTARRGLKF-EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGY 424
+ D G KF ++ + ED ++ V +I L G + GG
Sbjct: 79 VRFDFNGHGDSDGKFENMTVLNE-----IEDANAILNYVKTDP--HVRNIYLVGHAQGGV 131
Query: 425 LSAITLARFPDVFQCAVSGAPVTS-------WDGYDTFYTEKYMGLPSED---PVGYEY- 473
++++ +PD+ + V AP + + Y ++ +G Y
Sbjct: 132 VASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYL 191
Query: 474 -----SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH- 527
+ + + L+HG D V + + + + + H
Sbjct: 192 RIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKK----YDQIYQNSTLHLIEGADHC 247
Query: 528 MPRRHRDRIYMEERIWEFIERTL 550
++ +F++
Sbjct: 248 FSDSYQKNAV--NLTTDFLQNNN 268
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 73.4 bits (179), Expect = 4e-14
Identities = 34/299 (11%), Positives = 74/299 (24%), Gaps = 51/299 (17%)
Query: 276 LVLPLYEQPLTVPRIKRLQLEPPDI--VQIQANDGTVLYGALYKPDESRYGPPPYKTLIS 333
+ P ++ + +K + E + + +V + KP+ + G P I
Sbjct: 63 MKFPEIKRQPSPVCVKTEKKEGYILEKWEFYPFPKSVSTFLVLKPEHLK-GAVPGVLCIP 121
Query: 334 VYGGP---------CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK----- 379
G + + + N A + +G + +DN
Sbjct: 122 GSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDK 181
Query: 380 -------FEASIKHNCGR----IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI 428
+ G + + W+ Q + I + G+S G +
Sbjct: 182 GWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEP-MM 240
Query: 429 TLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK-- 486
L V + M P ++ +S+ H +
Sbjct: 241 VLGVLDKDIYAFVYNDFLCQTQ-----ERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFN 295
Query: 487 ------------LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 533
++ G +D + + A + E +P R
Sbjct: 296 FPDVVASLAPRPIIFTEGGLDRDFRL---VQSAYAASGKPENAEFHHYPKFADKAVRKD 351
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 2e-13
Identities = 39/278 (14%), Positives = 76/278 (27%), Gaps = 53/278 (19%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR-----A 355
++ N+G L+ P E+ P T++ G M A
Sbjct: 10 HVLRVNNGQELHVWETPPKEN--VPFKNNTILIASG------------FARRMDHFAGLA 55
Query: 356 QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG 415
+YL + G V++ D+ SI T WL +G +IG
Sbjct: 56 EYLSTNGFHVFRYDSLHHVGLS---SGSIDEFTMTTGKNSLCTVYHWLQTKG---TQNIG 109
Query: 416 LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSED-------- 467
L S + A + ++ + V D + Y+ LP ++
Sbjct: 110 LIAASLSARV-AYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFE 168
Query: 468 --PVGYEY-------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 512
+G E S + V L+ D+ V ++ +
Sbjct: 169 GHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHI-- 226
Query: 513 ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550
++ H + + + + +
Sbjct: 227 RTGHCKLYSLLGSSH--DLGENLVVLRNFYQSVTKAAI 262
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 3e-13
Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 28/221 (12%)
Query: 349 NTVDMR--AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406
+ DM A+ L+ G V+ G + + + + +
Sbjct: 34 SPNDMNFMARALQRSGYGVYVPLFSGHGTV------EPLDILTKGNPDIWWAESSAAVAH 87
Query: 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM----- 461
AK + ++G S GG + L P + V +P+ + KY
Sbjct: 88 MTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNR 147
Query: 462 --GLPSEDPVGYEY------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 507
G E Y ++V ++ +K + DE V R +L
Sbjct: 148 LAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLR 207
Query: 508 NALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548
+AL+ A + + D +H+ + +EE + F+++
Sbjct: 208 DALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQQ 247
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 4e-11
Identities = 36/301 (11%), Positives = 77/301 (25%), Gaps = 55/301 (18%)
Query: 276 LVLPLYEQPLTVPRIKRLQLEPPDI--VQIQANDGTVLYGALYKPDESRYGPPPYKTLIS 333
+ P + IKR Q E + + V + PD P ++
Sbjct: 68 MKFPQIKNSPAPVCIKREQREGYRLEKWEFYPLPKCVSTFLVLIPDN---INKPVPAILC 124
Query: 334 VYGG-----------PCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382
+ G + D + + +A +G + +DN
Sbjct: 125 IPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERY 184
Query: 383 SIKHN----------------CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLS 426
++ N + + W+ Q + I + G+S G
Sbjct: 185 TLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPM 244
Query: 427 AITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 486
+ + V + + M +P ++ +S+ H +
Sbjct: 245 MVLGTLDTSI-YAFVYNDFLCQTQ-----ERAEVMTMPDKNGRRPFPNSIRHLIPDFWKN 298
Query: 487 --------------LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 532
++L G +D ++ R A+V +I + R
Sbjct: 299 FNFPDIVAALAPRPIILTEGGLDRDLDL---VRKAYAIVGTPDNVKIYHYKKFSDPDTRK 355
Query: 533 R 533
Sbjct: 356 N 356
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 6e-11
Identities = 40/250 (16%), Positives = 69/250 (27%), Gaps = 42/250 (16%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 360
V + L G L P+ G ++ +G + V A+ L+
Sbjct: 15 VSVSV-GEVKLKGNLVIPN----GATG--IVLFAHGSGSSRY--SPRNRYV---AEVLQQ 62
Query: 361 KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWS 420
G+ +D + + A + +WL + +G +G S
Sbjct: 63 AGLATLLIDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGAS 122
Query: 421 YGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 480
GG + + A P+ Q VS G P D V
Sbjct: 123 TGGGAALVAAAERPETVQAVVS-----------------RGGRP--DLAPSALPHVKAPT 163
Query: 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEE 540
L+ G D V + AL + ++I P H+ + +
Sbjct: 164 L-------LIVGGYDLPVIAMNED----ALEQLQTSKRLVIIPRASHLFEEPGALTAVAQ 212
Query: 541 RIWEFIERTL 550
E+ L
Sbjct: 213 LASEWFMHYL 222
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-10
Identities = 36/223 (16%), Positives = 61/223 (27%), Gaps = 36/223 (16%)
Query: 352 DMR--AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409
MR A+ G V +G G +E R D + E
Sbjct: 55 SMRPLAEAYAKAGYTVCLPRLKG---HGTHYED-----MERTTFHDWVASVEEGYGWLKQ 106
Query: 410 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMG------- 462
+ I + G S GG L+ PD+ A V +
Sbjct: 107 RCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIG 166
Query: 463 ----LPSEDPVGYEY-------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTAR 505
P + YE + + ++ L+ D V +
Sbjct: 167 SDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADI 226
Query: 506 LINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548
+ + + K EI+ + H+ D+ + ER EF +
Sbjct: 227 IFQGISSTEK--EIVRLRNSYHVATLDYDQPMIIERSLEFFAK 267
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 6e-10
Identities = 41/296 (13%), Positives = 79/296 (26%), Gaps = 70/296 (23%)
Query: 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ 356
P +++ L G + TLI V GG + D + M
Sbjct: 134 PLKSIEVPFEGEL-LPGYAIISE-----DKAQDTLIVVGGGDTSR--EDLF----YMLGY 181
Query: 357 YLRSKGILVWKLDNRGTA---RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 413
V +D G +GL FE + ++ A
Sbjct: 182 SGWEHDYNVLMVDLPGQGKNPNQGLHFEVDARA------------AISAILDWYQAPTEK 229
Query: 414 IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEY 473
I + G+S GGY +A + + + S +D + F L + +
Sbjct: 230 IAIAGFSGGGYFTAQAVEKDKRIKAWIASTPI---YDVAEVFRISFSTALKAPKTILKWG 286
Query: 474 S------------------------------------SVMHHVHKMKGKLLLVHGMIDEN 497
S + + +K+ L + G +++
Sbjct: 287 SKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDS 346
Query: 498 VHFRHTARLINALVAARKPYEILIFPDERHMPRRH---RDRIYMEERIWEFIERTL 550
R + L + + F E H + M +++E++
Sbjct: 347 ELMRQSQVLYDNFKQRGIDVTLRKFSSESGAD-AHCQVNNFRLMHYQVFEWLNHIF 401
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 7e-10
Identities = 31/283 (10%), Positives = 65/283 (22%), Gaps = 51/283 (18%)
Query: 291 KRLQLEPPDIVQIQ-ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN 349
+ + I Q++ + + L+ P+ +I G DS
Sbjct: 159 EAAKKSKYIIKQLEIPFEKGKITAHLHLT----NTDKPHPVVIVS-AGL------DSLQT 207
Query: 350 -TVDMRAQYLRSKGILVWKLDNRGTAR-RGLKFEASIKHNCGRIDAEDQLTGA-EWLIKQ 406
+ +L I + +D D L
Sbjct: 208 DMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL---------TEDYSRLHQAVLNELFSI 258
Query: 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY------ 460
+GL G+ +GG + + V ++
Sbjct: 259 PYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLD 318
Query: 461 -----MGLPSEDPVGY-----EYS---SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 507
+G D +S K K +L + D + +++
Sbjct: 319 VLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSD-NQMV 377
Query: 508 NALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550
K +I + + D +++E L
Sbjct: 378 AFFSTYGKAKKISSKTITQGYE-QSLDLAI------KWLEDEL 413
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 7e-09
Identities = 45/258 (17%), Positives = 80/258 (31%), Gaps = 47/258 (18%)
Query: 293 LQLEPPDIVQIQANDGTV-LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTV 351
L + +++ + L G L++PD + +I V GG S+ +
Sbjct: 15 LYFQGMQVIKQKLTATCAQLTGYLHQPDTNA-HQTNLPAIIIVPGG--------SY-THI 64
Query: 352 DMR-----AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406
+ A G + L+ + A + +D A L++Q
Sbjct: 65 PVAQAESLAMAFAGHGYQAFYLEYTLLTDQQPLGLAPV------LDLGR----AVNLLRQ 114
Query: 407 GLAKVG----HIGLYGWSYGGYLSAITLARFPDVF-------------QCAVSGAPVTSW 449
A+ I G+S GG++ A+ + V G PV S
Sbjct: 115 HAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVIS- 173
Query: 450 DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINA 509
+ + + P + HV+ + D V +T A
Sbjct: 174 PLLGFPKDDATLATWTPTP---NELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATA 230
Query: 510 LVAARKPYEILIFPDERH 527
L A+ PYE+ +F H
Sbjct: 231 LATAKIPYELHVFKHGPH 248
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 7e-09
Identities = 36/245 (14%), Positives = 73/245 (29%), Gaps = 38/245 (15%)
Query: 296 EPPDIVQIQANDGTVLYGALYKPDESRYGP-PPYKTLISVYGGPCVQLVCDSWINTVDMR 354
+ + ND + Y+ R + +I GG + + + R
Sbjct: 12 KLMNKSTFSLNDTAWVD--FYQLQNPRQNENYTFPAIIICPGG--------GYQH-ISQR 60
Query: 355 -----AQYLRSKGILVWKLDNR--GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407
A ++G V L+ +++ + + LI Q
Sbjct: 61 ESDPLALAFLAQGYQVLLLNYTVMNKGTNYNFLSQNLE------EVQA----VFSLIHQN 110
Query: 408 LAKVG----HIGLYGWSYGGYLSAIT-LARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMG 462
+ + L G S GG+L+A + + + PVTS+ +
Sbjct: 111 HKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWP----SDLS 166
Query: 463 LPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522
+ + ++ V + H DE V ++ + + L + P+E F
Sbjct: 167 HFNFEIENISEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFF 226
Query: 523 PDERH 527
H
Sbjct: 227 ESGPH 231
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 Length = 615 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 13/166 (7%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISV--YG--GPCVQLVCDSWINTVDMRAQ 356
V I DG L+ + P G +++ Y G +L + +
Sbjct: 28 VMIPMRDGVKLHTVIVLPK----GAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDD 83
Query: 357 YLRSKGILVWKLDNRGT-----ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKV 411
G + D RG + + A D +WL+K
Sbjct: 84 VFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN 143
Query: 412 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 457
G +G+ G SY G+ + L + AV +P+ D ++
Sbjct: 144 GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDWFN 189
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 21/191 (10%), Positives = 49/191 (25%), Gaps = 32/191 (16%)
Query: 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG-- 412
A + + G+ L+ + + ++ I +
Sbjct: 58 ATRMMAAGMHTVVLNYQLIVGDQSVYPWAL------QQLGA----TIDWITTQASAHHVD 107
Query: 413 --HIGLYGWSYGGYLSAITLARFPD--------------VFQCAVSGAPVTSWDGYDTFY 456
I L G+S GG++ A + G PV
Sbjct: 108 CQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTT 167
Query: 457 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 516
+ + ++ + V + DE+V ++ + + A++ +
Sbjct: 168 SAARNQITTD----ARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVA 223
Query: 517 YEILIFPDERH 527
+F H
Sbjct: 224 TAYHLFGSGIH 234
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 5e-08
Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 34/184 (18%)
Query: 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG--------- 443
D ++ L+K+ + +I + G S G LA D +
Sbjct: 97 LYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQ 154
Query: 444 --APVTSWDG-YD--------TFYTEKYMGLPSEDPVGYEYSS------VMHHVHKMKGK 486
V DG Y Y + YE V + +
Sbjct: 155 IVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSID 214
Query: 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546
+ LVH DE + R T LI+ L + +++ + H + +Y ++ ++I
Sbjct: 215 MHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLH------NDVYKNGKVAKYI 268
Query: 547 ERTL 550
+
Sbjct: 269 FDNI 272
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Length = 247 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 47/232 (20%)
Query: 349 NTVDMR--AQYLRSKGILVWKLDNRG-----TARRGLKFEASIKHNCGRIDAEDQLTGAE 401
N+ D+R ++L SKG +G + + D + E
Sbjct: 28 NSADVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQ------DVMNGY---E 78
Query: 402 WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT---- 457
+L +G K+ + G S GG ++ L + AP+ +
Sbjct: 79 FLKNKGYEKIA---VAGLSLGGVF-SLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEY 134
Query: 458 --------EKYMGLPSEDPVGYEY-------------SSVMHHVHKMKGKLLLVHGMIDE 496
K ++ ++ + V H+ + +V DE
Sbjct: 135 AREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQARHDE 194
Query: 497 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548
++ + N + + K +I + H+ +++ + E I+ F+E
Sbjct: 195 MINPDSANIIYNEIESPVK--QIKWYEQSGHVITLDQEKDQLHEDIYAFLES 244
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A Length = 652 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 33/174 (18%), Positives = 54/174 (31%), Gaps = 30/174 (17%)
Query: 301 VQIQANDGTVLYGALYKPDESR----------YGPPPYKTLI-SVYGGPCVQLVCDSWIN 349
V + DG LY + P +R Y + + V D
Sbjct: 40 VMVPMRDGVKLYTVIVIPKNARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFV 99
Query: 350 -------TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW 402
D+R +Y S+G V G E + DA D + +W
Sbjct: 100 EGGYIRVFQDIRGKY-GSQGDYVMTRPPHGPLNPTKTDETT--------DAWDTV---DW 147
Query: 403 LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456
L+ G +G+ G SY G+ + L + A +P+ D ++
Sbjct: 148 LVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDDWF 201
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* Length = 560 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 6e-07
Identities = 38/275 (13%), Positives = 80/275 (29%), Gaps = 49/275 (17%)
Query: 284 PLTVPRIKRLQLEPPDI-----VQIQANDGTVLYGALYKPDE----------SRYG--PP 326
+ + +Q ++ ++ DG LY +++P++ YG
Sbjct: 22 GINHIVVDSVQYGNQEMIMEKDGTVEMRDGEKLYINIFRPNKDGKFPVVMSADTYGKDNK 81
Query: 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386
P T + + S+ + +V K+ RG+ +
Sbjct: 82 PKITNMGALWPTLGTIPTSSFTPEESPDPGFWVPNDYVVVKVALRGSDKSKGVLS----- 136
Query: 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446
+ +AED EW Q + G+IG G SY + P + + +
Sbjct: 137 PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGL 195
Query: 447 TSW------------DGYDTFYTEKYMGLPSEDPV--------------GYEYSSVMHHV 480
G+ F+T+ +++P + +
Sbjct: 196 NDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQVPL 255
Query: 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515
++K LL + +H R + + K
Sbjct: 256 SQIKTPLLTCASWSTQGLHNRGSFEGFKQAASEEK 290
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} Length = 241 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 19/128 (14%)
Query: 400 AEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEK 459
A W + G + + G+ +GG ++ + A P + + AV+ +Y
Sbjct: 104 ASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQL-KAAVA------------WY--- 146
Query: 460 YMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 519
G + + + +L ++G D ++ + AL AA EI
Sbjct: 147 --GKLVGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEI 204
Query: 520 LIFPDERH 527
+++P+ H
Sbjct: 205 VVYPEADH 212
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 32/244 (13%), Positives = 61/244 (25%), Gaps = 47/244 (19%)
Query: 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV 365
DG + G + P E G L+ G + ++ A+ L +GI
Sbjct: 38 VDGRTVPGVYWSPAE---GSSDRLVLLGHGGT------THKKVEYIEQVAKLLVGRGISA 88
Query: 366 WKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK-------------QGLAKVG 412
+D G R + +DA ++ +
Sbjct: 89 MAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAEEGPR 148
Query: 413 HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 472
G +G S G + A + + A+ G +
Sbjct: 149 PTGWWGLSMGTMMGLPVTASDKRI-KVALLGLMGVEGVNGEDL----------------- 190
Query: 473 YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 532
+ ++ + + DE V + L L +K L +H
Sbjct: 191 ----VRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGTKQKT---LHVNPGKHSAVPT 243
Query: 533 RDRI 536
+
Sbjct: 244 WEMF 247
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 32/214 (14%), Positives = 55/214 (25%), Gaps = 40/214 (18%)
Query: 315 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN----TVDMRAQYLRSKGILVWKLDN 370
L+ P+ P + V+GG W+ + A SKG V
Sbjct: 55 LFLPEG-----TPVGLFVFVHGG--------YWMAFDKSSWSHLAVGALSKGWAVAMPSY 101
Query: 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITL 430
+ + K+ G I L G S GG+L A L
Sbjct: 102 ELCPEV--RISEIT---------QQISQAVTAAAKE---IDGPIVLAGHSAGGHLVARML 147
Query: 431 AR------FPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK 484
+ V +P++ + + D S + ++
Sbjct: 148 DPEVLPEAVGARIRNVVPISPLSDLRPLLRTSMNEKFKM---DADAAIAESPVEMQNRYD 204
Query: 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518
K+ + G + L+ A A
Sbjct: 205 AKVTVWVGGAERPAFLDQAIWLVEAWDADHVIAF 238
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* Length = 318 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 412 GHIGLYGWSYGGYLSAITLARFPDVFQCAV---SGAPV---TSWDGYDTFYT-EKYMGLP 464
+ + G + GGY++A + DVF +G P + Y + P
Sbjct: 11 NSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTP 70
Query: 465 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 507
+ + + + + + + K+ + G D V +L
Sbjct: 71 TANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLK 113
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 31/232 (13%), Positives = 58/232 (25%), Gaps = 41/232 (17%)
Query: 315 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN----TVDMRAQYLRSKGILVWKLDN 370
++ +++ P + V+GG W L +G V +D
Sbjct: 72 VFYSEKTTNQAP---LFVFVHGG--------YWQEMDMSMSCSIVGPLVRRGYRVAVMDY 120
Query: 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGA-EWLIKQGLA-KVGHIGLYGWSYGGYLSAI 428
L + +++ Q T W+ KV + G G +L A
Sbjct: 121 N------LCPQVTLE------QLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQ 168
Query: 429 TLAR-------FPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVH 481
L R + + V + + + E S M +
Sbjct: 169 ILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESVNPKNILGLNERNIESVSPMLWEY 228
Query: 482 KMKG-----KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528
K+ +V D + + L +F H
Sbjct: 229 TDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHF 280
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 39/218 (17%), Positives = 62/218 (28%), Gaps = 32/218 (14%)
Query: 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRI--DAEDQLTGAEWLIKQGLAKVG 412
S G+ + D G G F G I E+ L + + VG
Sbjct: 59 DDLAASLGVGAIRFDYSGHGASGGAFR------DGTISRWLEEALAVLDHFKPEKAILVG 112
Query: 413 H--IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY-----TEKYMGLPS 465
G L A ++ AP + D + E
Sbjct: 113 SSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYF 172
Query: 466 EDPVGYEY---------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 510
E+ Y + VM + + ++ GM D +V ++H +L+ L
Sbjct: 173 EEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHL 232
Query: 511 VAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548
A + + D H R +D M I IE
Sbjct: 233 PADDV--VLTLVRDGDHRLSRPQDIDRMRNAIRAMIEP 268
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 68/479 (14%), Positives = 138/479 (28%), Gaps = 166/479 (34%)
Query: 119 DIKTGQRKV----ILVEELDSWVNLHDCFTPLD--KGVTKYSGGFIWASEKTGFRHLYL- 171
D +TG+ + IL D++V+ DC D K + K H+ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS----------KEEIDHIIMS 57
Query: 172 -HDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230
++GT + ++ E Q + L ++ +
Sbjct: 58 KDAVSGT--------LRLFWTLLSKQEEMVQKFVEEVLR-------------INYKFLMS 96
Query: 231 APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRI 290
R +++ D L + ++ V R+
Sbjct: 97 PIKTEQRQPSM-------MTRMYIEQRDRLYNDNQVF---------------AKYNVSRL 134
Query: 291 KR--------LQLEPPDIVQIQANDG---TVLYGALYKPDESRYGPPPYKTLISVYGGPC 339
+ L+L P V I G T + + +K ++
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFK----IF---- 185
Query: 340 VQLVCDSWIN-----TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAE 394
W+N + + + L+ L++++D T+R ++IK I AE
Sbjct: 186 -------WLNLKNCNSPETVLEMLQK---LLYQIDPNWTSR--SDHSSNIKLRIHSIQAE 233
Query: 395 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC-------------AV 441
+ + L + ++ + A F + C +
Sbjct: 234 LRRLLKSKPYENCLLVLLNV----QN------AKAWNAF-N-LSCKILLTTRFKQVTDFL 281
Query: 442 SGA---PVTSWDGYDTFYTE-------KYMGLPSED-PVGYEYSSVMHHVHKMKGKLLLV 490
S A ++ T + KY+ +D P ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------------REVLTTNPRR 329
Query: 491 HGMIDENVH--------FRH--TARL-------INALVAA--RKPYEIL-IFPDERHMP 529
+I E++ ++H +L +N L A RK ++ L +FP H+P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 81/536 (15%), Positives = 140/536 (26%), Gaps = 203/536 (37%)
Query: 86 DEEYLARVNWMHG---NILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDC 142
+ + ++ + G + V S + F I W+NL +C
Sbjct: 149 PAKNVL-IDGVLGSGKTWVALDVC-LSYKVQCKMDFKI--------------FWLNLKNC 192
Query: 143 FTP---LDKGVTKYSGGFIWASEKTGFRHLYLH-DINGTCLGPITEGDWMVEQIVGVNEA 198
+P L+ L D N T + D + ++
Sbjct: 193 NSPETVLEMLQK-----------------LLYQIDPNWT-----SRSDHSSNIKLRIHSI 230
Query: 199 SGQVYFTGTLDGPLESHLYCAKLYPD--------WNH---------------TLEAPV-- 233
++ L +K Y + N T V
Sbjct: 231 QAEL-----------RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 234 KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ-----PLTVP 288
L+ H+ LDH+ + + L C QD LP + P +
Sbjct: 280 FLSAATTTHI-SLDHHSMTLTP-DEVKSLLLKYLDCRPQD----LP--REVLTTNPRRLS 331
Query: 289 RIKRLQLEPPDIV----QIQAND-GTVL---YGALYKPDESR--YG-----PP----PYK 329
I + + + T++ L +P E R + PP P
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 330 TLISVYGGPCVQLVCDSWIN----TVDMRAQYLRSKGILVWKLDNRGTAR-RGLKFEASI 384
L S+ W + V + L LV K T + E +
Sbjct: 391 LL-SLI-----------WFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKV 437
Query: 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA 444
K ++ E L H + Y P F
Sbjct: 438 K-----LENEYAL---------------HRSIVD-HY----------NIPKTFD------ 460
Query: 445 PVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHF--- 500
S D + P D Y YS + HH+ ++ + + + M+ + F
Sbjct: 461 ---SDD----------LIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 501 --RHTARLINA------LVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548
RH + NA + K Y+ I ++ R I +F+ +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-------ILDFLPK 554
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 9e-05
Identities = 70/494 (14%), Positives = 137/494 (27%), Gaps = 139/494 (28%)
Query: 35 GKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDL-QCGGTD------QN--- 84
GK+ V + + V + W++L C + Q
Sbjct: 162 GKTWVALDVCLSY--------------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 85 -YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWV----N 138
D + +R + L ++ Q +L+ L K + ++++ + ++ N
Sbjct: 208 QIDPNWTSRSDHSSNIKLR---IHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 139 LHDC---FTPLDKGVTKYSGG-----FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVE 190
L C T K VT + + + L D +
Sbjct: 264 LS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQD-LPR 320
Query: 191 QIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE-----APVKLTNGKGKHVAV 245
+++ N P + A+ D T + KLT + V
Sbjct: 321 EVLTTN--------------PRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 246 LDHN-MRN-FVD---FHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDI 300
L+ R F F S P LL + + + + V ++ + L
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFD---VIKSDVMVVVNKLHKYSL----- 416
Query: 301 VQIQANDGTVLYGALY-----KPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA 355
V+ Q + T+ ++Y K + +++++ Y P DS
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYA---LHRSIVDHYNIPKTF---DSDDLIPPYLD 470
Query: 356 QYLRSKGILVWKLDNRGTARRGLKF----------EASIKHNCGRIDAEDQLTGAEWLIK 405
QY S + L N R F E I+H W
Sbjct: 471 QYFYSH--IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH-----------DSTAWNAS 517
Query: 406 QGLAKV--------GHIGLYGWSYGGYLSAI-----------TLARFPDVFQCAVSGAPV 446
+ +I Y ++AI +++ D+ + A+
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM---- 573
Query: 447 TSWDGYDTFYTEKY 460
+ + E +
Sbjct: 574 ---AEDEAIFEEAH 584
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-05
Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 15/156 (9%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 360
V G L LY P G ++ V+ + + AQ +
Sbjct: 71 VTFANRYGITLAADLYLPKN--RGGDRLPAIVIGGPFGAVK------EQSSGLYAQTMAE 122
Query: 361 KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWS 420
+G + D T G + I+ ED +++ IG+ G
Sbjct: 123 RGFVTLAFDPSYTGESGGQPR---NVASPDINTEDFSAAVDFISLLPEVNRERIGVIGIC 179
Query: 421 YGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456
G ++ +A V AV T +D
Sbjct: 180 GWGGMALNAVAVDKRV--KAV--VTSTMYDMTRVMS 211
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} Length = 275 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 16/120 (13%)
Query: 412 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 471
G L+G GG + L + FQ +P W+ E+ + + +
Sbjct: 152 GKQTLFGHXLGGLFALHILFTNLNAFQNYFISSPSIWWNNKSVLEKEENLIIELNNA--- 208
Query: 472 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP---YEILIFPDERHM 528
K + + L G ++ L L+ ++ E H
Sbjct: 209 ----------KFETGVFLTVGSLEREHMVVGANELSERLLQVNHDKLKFKFYEAEGENHA 258
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 550 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.95 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.95 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.94 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.94 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.93 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.93 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.93 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.93 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.93 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.93 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.93 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.93 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.93 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.93 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.93 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.93 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.93 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.92 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.92 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.92 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.92 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.92 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.91 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.91 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.91 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.91 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.91 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.91 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.91 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.91 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.91 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.91 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.9 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.9 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.9 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.9 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.9 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.9 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.9 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.9 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.9 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.9 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.9 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.9 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.89 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.89 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.89 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.89 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.89 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.89 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.89 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.89 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.89 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.88 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.88 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.88 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.88 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.88 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.88 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.88 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.88 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.88 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.87 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.87 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.87 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.87 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.87 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.87 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.87 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.87 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.86 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.86 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.86 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.86 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.85 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.85 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.85 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.85 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.84 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.84 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.84 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.84 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.84 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.84 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.84 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.84 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.84 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.84 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.84 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.84 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.84 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.83 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.83 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.83 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.83 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.83 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.83 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.83 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.83 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.83 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.82 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.82 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.82 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.82 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.82 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.82 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.82 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.82 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.82 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.81 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.81 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.81 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.81 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.81 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.81 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.8 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.8 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.8 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.8 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.8 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.8 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.8 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.8 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.8 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.79 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.79 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.79 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.79 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.79 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.79 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.79 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.79 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.79 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.79 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.79 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.79 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.79 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.78 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.78 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.78 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.77 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.77 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.77 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.77 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.77 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.77 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.77 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.77 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.77 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.76 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.76 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.76 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.76 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.76 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.76 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.76 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.75 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.75 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.75 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.74 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.74 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.74 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.74 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.73 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.73 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.73 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.73 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.73 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.73 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.72 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.72 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.71 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.71 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.71 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.71 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.7 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.7 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.68 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.68 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.49 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.67 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.67 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.66 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.65 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.64 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.64 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.64 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.63 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.62 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.62 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.62 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.6 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.6 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.59 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.57 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.57 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.55 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.55 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.54 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.53 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.52 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.51 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.51 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.5 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.5 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.5 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.5 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.49 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.49 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.47 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.46 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.45 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.42 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.41 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.4 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.39 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.39 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.38 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.38 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 99.37 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.37 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.35 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.35 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.33 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.33 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.32 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.3 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 99.29 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.28 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.27 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.27 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.26 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.16 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.12 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.12 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 99.1 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.09 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 99.07 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 99.06 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 99.06 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 99.05 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 99.05 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 99.05 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.04 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 99.03 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 99.02 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 99.01 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 99.01 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 99.01 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 98.97 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.96 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.96 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.95 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.93 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.92 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.91 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.9 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.9 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.9 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.89 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.89 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.88 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.87 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.85 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.83 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.78 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.75 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.73 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.73 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.72 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.68 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.68 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.65 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.64 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.63 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.63 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.61 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.6 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.58 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 98.58 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.57 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.57 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.55 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.55 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.52 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.51 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.5 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.49 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.48 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.47 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.46 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.46 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.45 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.44 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.44 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.43 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.43 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.43 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.42 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.41 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.41 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.35 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 98.34 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.33 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.32 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.3 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.28 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.27 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.27 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.26 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.25 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.25 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.24 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.24 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.24 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.23 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.22 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.2 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.19 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.19 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 98.18 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.18 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.17 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.17 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.17 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.16 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.16 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.15 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.14 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.14 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.14 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.13 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.13 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.13 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.11 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.11 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.1 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.1 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.1 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.09 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.08 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.06 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.06 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.05 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.05 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.04 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.03 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.03 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.02 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.99 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.98 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.98 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.95 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.95 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 97.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.92 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.92 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.91 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.9 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.89 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.88 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.87 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.86 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.86 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.85 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.85 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.81 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.79 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.78 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.77 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.77 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.77 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.74 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.73 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.71 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 97.71 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.7 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.7 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.69 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.69 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.68 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.67 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.66 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.64 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.63 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.62 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.55 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.55 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.53 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.53 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.51 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.51 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.51 | |
| 1gxs_A | 270 | P-(S)-hydroxymandelonitrIle lyase chain A; inhibit | 97.5 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.49 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.49 | |
| 4az3_A | 300 | Lysosomal protective protein 32 kDa chain; hydrola | 97.46 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.46 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.46 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.45 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.45 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.43 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.43 | |
| 1tib_A | 269 | Lipase; hydrolase(carboxylic esterase); 1.84A {The | 97.4 | |
| 1cpy_A | 421 | Serine carboxypeptidase; hydrolase (carboxypeptida | 97.4 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.4 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.39 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.35 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.34 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.34 | |
| 1ac5_A | 483 | KEX1(delta)P; carboxypeptidase, hydrolase, glycopr | 97.3 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 97.29 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.29 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.26 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.25 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.21 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.2 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.19 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.19 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.17 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.13 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.1 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.07 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.04 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 97.03 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.02 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.98 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.96 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.94 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 96.92 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.91 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 96.84 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.83 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 96.83 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 96.82 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 96.8 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.8 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.79 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.78 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.77 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.76 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.75 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 96.75 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.71 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.68 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.63 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.62 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.62 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.62 | |
| 1tia_A | 279 | Lipase; hydrolase(carboxylic esterase); 2.10A {Pen | 96.6 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.57 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.48 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.47 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.38 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.31 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.26 | |
| 1tgl_A | 269 | Triacyl-glycerol acylhydrolase; carboxylic esteras | 96.07 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 95.84 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 95.81 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.79 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.78 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.67 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 95.58 | |
| 1lgy_A | 269 | Lipase, triacylglycerol lipase; hydrolase (carboxy | 95.57 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 95.48 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 95.36 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.3 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.22 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 95.12 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.09 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 95.08 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.07 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-68 Score=575.80 Aligned_cols=528 Identities=25% Similarity=0.398 Sum_probs=443.1
Q ss_pred CccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC---C---ceEEEE
Q 008873 2 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG---G---PVSWMD 75 (550)
Q Consensus 2 ~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~---~---~~~~l~ 75 (550)
++..+++|||||++|||.+.+++.++.+.++.+.......+....++||++|+.|+.+.|+++|+++ + +.+++.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 5567899999999999999999999999998875542123677789999999999999999999999 8 566664
Q ss_pred cccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc-------eEEEEEeecCceeeccCccccCCC
Q 008873 76 LQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-------RKVILVEELDSWVNLHDCFTPLDK 148 (550)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~-------~~~l~~~~~~~~~~~~~~~~~~~~ 148 (550)
... .+...+.++..++|||||+.+++..+|.++...|+++++++|+ .++++++....|++......
T Consensus 251 ~~~---~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~---- 323 (740)
T 4a5s_A 251 APA---SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE---- 323 (740)
T ss_dssp CCH---HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC----
T ss_pred CCc---cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC----
Confidence 310 0012466889999999999999999999888899999999998 34555555667765210011
Q ss_pred CCccCCCc--EE-EEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC--CCCceeEEEEEEeCC
Q 008873 149 GVTKYSGG--FI-WASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL--DGPLESHLYCAKLYP 223 (550)
Q Consensus 149 ~~~~~~~~--~~-~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~--~~~~~~~l~~v~~~~ 223 (550)
+.|++|+ ++ +.++++|+.|||++++++++.++||.++|++..+.. +|++.|||+++. +++..++||++++
T Consensus 324 -p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~--~d~~~i~f~~~~~~~~~~~~~ly~v~~-- 398 (740)
T 4a5s_A 324 -PHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQL-- 398 (740)
T ss_dssp -CEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE--ECSSEEEEEESCGGGCTTCBEEEEEET--
T ss_pred -ceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE--EeCCEEEEEEecCCCCCceeEEEEEEC--
Confidence 1345554 65 788999999999999999999999999999877643 558999999998 7778899999998
Q ss_pred CCCCCCCCCeeeCCC-----CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCC
Q 008873 224 DWNHTLEAPVKLTNG-----KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPP 298 (550)
Q Consensus 224 ~g~~~~~~~~~lt~~-----~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~ 298 (550)
+++. ..++|++. .+.+.++|||||+++++.++++. ||.+++++..+++..+.+..+....+.+....++..
T Consensus 399 ~g~~---~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~ 474 (740)
T 4a5s_A 399 IDYT---KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSK 474 (740)
T ss_dssp TEEE---EEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEE
T ss_pred CCCC---cceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCcc
Confidence 5431 22377753 45788999999999999999887 889999998777766666655444456677778888
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCc
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRG 377 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~ 377 (550)
+.+.+ ..+|..++++++.|++.. ..+++|+||++|||++.+.+.+.|...+ ...++ ++||+|+++|+||+|+++
T Consensus 475 ~~~~~-~~dg~~l~~~~~~P~~~~-~~~~~P~vv~~HGg~~~~~~~~~~~~~~---~~~l~~~~G~~Vv~~D~rG~g~~g 549 (740)
T 4a5s_A 475 KLDFI-ILNETKFWYQMILPPHFD-KSKKYPLLLDVYAGPCSQKADTVFRLNW---ATYLASTENIIVASFDGRGSGYQG 549 (740)
T ss_dssp EEEEE-EETTEEEEEEEEECTTCC-TTSCEEEEEECCCCTTCCCCCCCCCCSH---HHHHHHTTCCEEEEECCTTCSSSC
T ss_pred EEEEE-ccCCeEEEEEEEeCCCCC-CCCCccEEEEECCCCcccccccccCcCH---HHHHHhcCCeEEEEEcCCCCCcCC
Confidence 88888 679999999999998753 2368999999999999876666665433 34555 699999999999999999
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 457 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 457 (550)
..+.......++..+++|+.+++++|.+++.+|++||+|+||||||++++.++.++|++|+++++.+|+.+|..+...+.
T Consensus 550 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~ 629 (740)
T 4a5s_A 550 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYT 629 (740)
T ss_dssp HHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHHH
T ss_pred hhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhhHHH
Confidence 99988888888888899999999999988889999999999999999999999999999999999999999999999999
Q ss_pred hhccCCC--CCCccccccCChhhhhhcCCC-cEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCc
Q 008873 458 EKYMGLP--SEDPVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRD 534 (550)
Q Consensus 458 ~~~~g~~--~~~~~~~~~~~~~~~~~~i~~-P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~ 534 (550)
+++++.| ..+.+.|...++...++++++ |+||+||+.|.+||++++.+++++|+++++++++++||+++|.+...+.
T Consensus 630 ~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 709 (740)
T 4a5s_A 630 ERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTA 709 (740)
T ss_dssp HHHHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHH
T ss_pred HHHcCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEEcCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCcc
Confidence 9999987 778888999999999999997 9999999999999999999999999999999999999999999966677
Q ss_pred HHHHHHHHHHHHHHhC
Q 008873 535 RIYMEERIWEFIERTL 550 (550)
Q Consensus 535 ~~~~~~~~~~fl~~~l 550 (550)
...+++.+.+||+++|
T Consensus 710 ~~~~~~~i~~fl~~~l 725 (740)
T 4a5s_A 710 HQHIYTHMSHFIKQCF 725 (740)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8899999999999886
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-60 Score=513.60 Aligned_cols=519 Identities=29% Similarity=0.550 Sum_probs=430.2
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD 82 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 82 (550)
+..+++|||||++|||.+.+++.++.+.+....... +....++|+++|..+....|+++|+++++.+++...
T Consensus 182 ~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~---~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~----- 253 (706)
T 2z3z_A 182 IEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE---AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG----- 253 (706)
T ss_dssp CCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS---CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC-----
T ss_pred CCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC---CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC-----
Confidence 457899999999999999999988888887765442 667789999999999999999999999987766432
Q ss_pred CCCCCceeEEEEECCCCeEEEEE-EecCCCceEEEEEECCCC-ceEEEEEeecCceeeccCccccCCCCCccCC--Cc-E
Q 008873 83 QNYDEEYLARVNWMHGNILTAQV-LNRSQTKLKVLKFDIKTG-QRKVILVEELDSWVNLHDCFTPLDKGVTKYS--GG-F 157 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~-~~r~~~~~~l~~~~~~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~ 157 (550)
.....++..++|||||+.|++. .++.+....|+++|+++| +.+.+.......|.+..... .|++ |+ +
T Consensus 254 -~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~-------~~sp~~dg~~ 325 (706)
T 2z3z_A 254 -EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL-------TFLPGSNNQF 325 (706)
T ss_dssp -SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC-------EECTTCSSEE
T ss_pred -CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc-------eeecCCCCEE
Confidence 1234578899999999977764 456566678999999999 66777665555554211111 3455 54 8
Q ss_pred EEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 158 IWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 158 ~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
++.++++|..+||.++.+++..++||.+.+.+.....|++||+.|+|.+..+++....||.+++ .+. +.++++.
T Consensus 326 l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~--~~~----~~~~l~~ 399 (706)
T 2z3z_A 326 IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI--KGG----KTKDLTP 399 (706)
T ss_dssp EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET--TCC----CCEESCC
T ss_pred EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc--CCC----CceeccC
Confidence 8888888999999999888889999999888776556999999999999887766689999998 443 5678887
Q ss_pred CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCC-cEEEEEEE
Q 008873 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDG-TVLYGALY 316 (550)
Q Consensus 238 ~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~ 316 (550)
..+...++|||||+++++.+++...|++++++++.+++ ...++.. ..+....++..+.+.+++.+| ..++++++
T Consensus 400 ~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 400 ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAK----NPDTGYAMPEIRTGTIMAADGQTPLYYKLT 474 (706)
T ss_dssp SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC----------CCCCEEEEEEECTTSSSEEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecccc----chhhhcCCCCcEEEEEEcCCCCEEEEEEEE
Confidence 77788889999999999999999999999999997776 4445432 235566788889999999999 89999999
Q ss_pred cCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHH
Q 008873 317 KPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQ 396 (550)
Q Consensus 317 ~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~ 396 (550)
.|.+.. ..+++|+||++|||+..+.....|......+++.|+++||.|+++|+||+|+++..+.......++..+++|+
T Consensus 475 ~P~~~~-~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~ 553 (706)
T 2z3z_A 475 MPLHFD-PAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQ 553 (706)
T ss_dssp CCTTCC-TTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHH
T ss_pred eCCCCC-CCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHH
Confidence 998753 2257899999999988875545565432335788999999999999999999998887777667776778999
Q ss_pred HHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCCh
Q 008873 397 LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSV 476 (550)
Q Consensus 397 ~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 476 (550)
.+++++|.+++.+|.+||+|+||||||++++.++.++|++|+++|+.+|+.++..+...+.+++++.++.+.+.|...++
T Consensus 554 ~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (706)
T 2z3z_A 554 MCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQENPEGYDAANL 633 (706)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGSBHHHHHHHHCCTTTCHHHHHHHCG
T ss_pred HHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchHHHHhhhhhhhcCCcccChhhhhhCCH
Confidence 99999999888889999999999999999999999999999999999999999888888888888888888888888899
Q ss_pred hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 477 MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 477 ~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
...+.++++|+|++||+.|.++|++++.+++++|...++++++.++|+++|.+... +...+++.+.+||+++|
T Consensus 634 ~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 634 LKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp GGGGGGCCSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred hHhHHhCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998554 77889999999999986
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-59 Score=507.11 Aligned_cols=527 Identities=25% Similarity=0.404 Sum_probs=423.8
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCce-EEEEcccCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV-SWMDLQCGGT 81 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~l~~~~~~~ 81 (550)
+..+++|||||++|||.+.+.+.+..+.+....... .+....++|++.|..++...|+++|+++++. ++++.. .
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~---~ 248 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI--YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP---D 248 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS--SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC---C
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcC--CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC---c
Confidence 457899999999999999998888888776554432 2567889999999999999999999999874 555321 0
Q ss_pred CCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEE
Q 008873 82 DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIW 159 (550)
Q Consensus 82 ~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 159 (550)
.+......+..++|||||+++++..++.+....|+++|+++|+++.+.......|++... ..+.|++|+ +++
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~------~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQN------EEPVFSKDGRKFFF 322 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCC------CCCEECTTSCSEEE
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccC------CCceEcCCCCeEEE
Confidence 001124577889999999988888888777788999999999988887655445543100 011345554 677
Q ss_pred E-EccCC----ccEEEEEe-CCCce---eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCC
Q 008873 160 A-SEKTG----FRHLYLHD-INGTC---LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230 (550)
Q Consensus 160 ~-s~~~g----~~~l~~~~-~~~~~---~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~ 230 (550)
. ++++| +.+||+++ .++++ .++||.+.+.+.....|||||+.|||.++.+++...+||.+++ ++..
T Consensus 323 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~--~~~~--- 397 (723)
T 1xfd_A 323 IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT--VGNF--- 397 (723)
T ss_dssp EEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS--STTC---
T ss_pred EEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC--CCCC---
Confidence 6 66677 78999999 67777 8899988887766556999999999999886555689999987 4421
Q ss_pred CCeeeCC----CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcC
Q 008873 231 APVKLTN----GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQAN 306 (550)
Q Consensus 231 ~~~~lt~----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (550)
..++|+. ......++|||||+++++.+++++.|+.++. +..+++.+..+..+......+....+..++.+.+++.
T Consensus 398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (723)
T 1xfd_A 398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEID 476 (723)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE-ETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEET
T ss_pred CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE-ECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcC
Confidence 3456664 3346778999999999999999988876654 7666665555554322234566778888999999999
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+| .++++++.|++.. ..+++|+||++||+++.+.....|.. ....+.|+++||+|+++|+||+|+++..+......
T Consensus 477 ~g-~l~~~~~~P~~~~-~~~~~p~vv~~HG~~~~~~~~~~~~~--~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~ 552 (723)
T 1xfd_A 477 DY-NLPMQILKPATFT-DTTHYPLLLVVDGTPGSQSVAEKFEV--SWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRR 552 (723)
T ss_dssp TE-EECCBEEBCSSCC-SSSCEEEEEECCCCTTCCCCCCCCCC--SHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTT
T ss_pred Cc-eEEEEEEeCCCCC-CCCccCEEEEEcCCCCccccCccccc--cHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHh
Confidence 99 9999999998742 23688999999999887544444532 23456778899999999999999999888776666
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC----CCeeEEEEEcCCcCCcccccchhhhhccC
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAPVTSWDGYDTFYTEKYMG 462 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~g 462 (550)
.++...++|+.++++++.+++.+|.+||+|+||||||++++.++.++ |++|+++++.+|+.++..+...+.+.+++
T Consensus 553 ~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 632 (723)
T 1xfd_A 553 RLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLG 632 (723)
T ss_dssp CTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHHHHHHHC
T ss_pred ccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhhhhccHhhcC
Confidence 67777899999999999988888999999999999999999999999 99999999999999998887777778888
Q ss_pred CCCCCccccccCChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHH
Q 008873 463 LPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEER 541 (550)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~ 541 (550)
.+....+.+...++...+.+++ +|+||+||+.|.++|++++.+++++|++.+++++++++|+++|.+...+....+++.
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~ 712 (723)
T 1xfd_A 633 LHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRS 712 (723)
T ss_dssp CCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHH
T ss_pred CccCChhHHHhcChhhHHhhcCCCCEEEEEeCCCCCcCHhHHHHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHH
Confidence 8877777888888889999999 799999999999999999999999999999999999999999998666778889999
Q ss_pred HHHHHHHhC
Q 008873 542 IWEFIERTL 550 (550)
Q Consensus 542 ~~~fl~~~l 550 (550)
+++||+++|
T Consensus 713 i~~fl~~~l 721 (723)
T 1xfd_A 713 IINFFVECF 721 (723)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHHh
Confidence 999999876
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-58 Score=499.32 Aligned_cols=521 Identities=35% Similarity=0.660 Sum_probs=425.3
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC-CceEEEEcccCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GPVSWMDLQCGGT 81 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~l~~~~~~~ 81 (550)
+..+++|||||++|+|.+.+.+.+..+....... .......++|+++|..+....|+++|+++ ++.+.+...
T Consensus 210 ~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p---~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---- 282 (741)
T 2ecf_A 210 RHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYA---DRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---- 282 (741)
T ss_dssp CCCSEEECTTSSCEEEEEEECTTSCEEEEEEECS---SCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC----
T ss_pred cccceEECCCCCEEEEEEEcCCCCceEecCCCCC---CcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC----
Confidence 3578999999999999998887776654222110 01235678999999999999999999999 988776442
Q ss_pred CCCCCCceeEEEEECCCCeEEEEEE-ecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEE
Q 008873 82 DQNYDEEYLARVNWMHGNILTAQVL-NRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIW 159 (550)
Q Consensus 82 ~~~~~~~~~~~~~wspDg~~i~~~~-~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (550)
......+..++| |||+.|++.. ++......|+++|+++|+.+.++......|++....+ .|++|+ +++
T Consensus 283 --~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~-------~~spdg~~~~ 352 (741)
T 2ecf_A 283 --KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL-------RFLDDGSILW 352 (741)
T ss_dssp --SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC-------EECTTSCEEE
T ss_pred --CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce-------EECCCCeEEE
Confidence 123467889999 9999777665 4666678899999999999888876655564311111 345554 888
Q ss_pred EEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC
Q 008873 160 ASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK 239 (550)
Q Consensus 160 ~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~ 239 (550)
.+.++|..+||.++.+++ .++||.+.+.+..+..||+||+.|+|.+..+++...+||.++. ++. .+++|+...
T Consensus 353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~--~g~----~~~~l~~~~ 425 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL--QGG----QPQRLSKAP 425 (741)
T ss_dssp EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET--TCC----CCEECCCSC
T ss_pred EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc--CCC----CeeecccCC
Confidence 888889999999998877 8899999888877656999999999999887766689999987 554 577888766
Q ss_pred ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCC-Chh-hhhcC--CCCCCeEEEEEcCCC-cEEEEE
Q 008873 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPL-TVP-RIKRL--QLEPPDIVQIQANDG-TVLYGA 314 (550)
Q Consensus 240 ~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~g-~~l~~~ 314 (550)
+.+.++|||||+++++.+++...|+++++++.. ++.++.++.+.. ... .+... .+...+.+.|++.+| ..++++
T Consensus 426 ~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~ 504 (741)
T 2ecf_A 426 GMHSASFARNASVYVDSWSNNSTPPQIELFRAN-GEKIATLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYS 504 (741)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEEETT-SCEEECSSCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEEEE
T ss_pred CceEEEECCCCCEEEEEecCCCCCCeEEEEEcC-CCeEEEeccCcccccccchhhhhccCCCcEEEEEEcCCCCEEEEEE
Confidence 788889999999999999999999999999984 555666765433 222 44455 678899999999999 999999
Q ss_pred EEcCCCCCCCCCCceEEEEEcCCCCceeecccccccch-hHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCch
Q 008873 315 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD-MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDA 393 (550)
Q Consensus 315 ~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~-~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~ 393 (550)
++.|.+.. ..+++|+||++||+++.......|..... .+++.|+++||+|+++|+||+|+++..+.......++..++
T Consensus 505 ~~~P~~~~-~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~ 583 (741)
T 2ecf_A 505 VIKPAGFD-PAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEV 583 (741)
T ss_dssp EECCSSCC-TTSCEEEEEECCCSTTCCSCSSCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHH
T ss_pred EEeCCCCC-CCCCcCEEEEEcCCCCcccccccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccH
Confidence 99998642 22578999999999887543444532211 35788999999999999999999998887777777777789
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCcccccc
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEY 473 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 473 (550)
+|+.+++++|.+++.+|.++|+|+||||||++++.++.++|++|+++|+.+|+.++..+...+.+.+++.++...+.|..
T Consensus 584 ~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (741)
T 2ecf_A 584 ADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYMDLPARNDAGYRE 663 (741)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGGSBHHHHHHHHCCTGGGHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhhhccccchhhcCCcccChhhhhh
Confidence 99999999999988889999999999999999999999999999999999999999888777778888888777777888
Q ss_pred CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 474 SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 474 ~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.+++..+.++++|+|++||+.|.++|+.++.+++++|...+++++++++|+++|.+..... ..+++.+++||+++|
T Consensus 664 ~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-~~~~~~i~~fl~~~l 739 (741)
T 2ecf_A 664 ARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADA-LHRYRVAEAFLGRCL 739 (741)
T ss_dssp HCSGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCSSCCHHHH-HHHHHHHHHHHHHHH
T ss_pred cCHHHHHhhCCCCEEEEccCCCCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCCCCCCch-hHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999999999999999999999854333 788999999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=501.41 Aligned_cols=525 Identities=24% Similarity=0.401 Sum_probs=417.5
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE---EEEcccC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS---WMDLQCG 79 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~---~l~~~~~ 79 (550)
+..+++|||||++|||.+.+++.+..+.++.+.... .+....++||++|..++...|+++|+++++.. ++...
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~-- 245 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQ--YPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP-- 245 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSS--SCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC--
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCC--CccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC--
Confidence 446899999999999999998888888888776543 36778899999999999999999999998752 33210
Q ss_pred CCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEE----CCCCceEEEEE---eecCceeeccCccccCCCCCcc
Q 008873 80 GTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFD----IKTGQRKVILV---EELDSWVNLHDCFTPLDKGVTK 152 (550)
Q Consensus 80 ~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~----~~~g~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~ 152 (550)
..+.....++..++|||||++++...+|.+...+|++++ +++|+++.++. .....|++.... ..+.|
T Consensus 246 -~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 319 (719)
T 1z68_A 246 -AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFV-----STPVF 319 (719)
T ss_dssp -HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSC-----CCCEE
T ss_pred -ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccC-----CccEE
Confidence 001133557889999999987777777877778899999 99998777664 333455431000 01134
Q ss_pred CCCc--EEE-EEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC--CCCceeEEEEEEeCCCCCC
Q 008873 153 YSGG--FIW-ASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL--DGPLESHLYCAKLYPDWNH 227 (550)
Q Consensus 153 ~~~~--~~~-~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~--~~~~~~~l~~v~~~~~g~~ 227 (550)
++|+ +++ .++++|+.+||++++++++.++||.+.+.+..+..| ||+.|+|+++. +.+...+||.+++ +++.
T Consensus 320 spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~~~--~~g~ 395 (719)
T 1z68_A 320 SYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV--TQDSLFYSSNEFEEYPGRRNIYRISI--GSYP 395 (719)
T ss_dssp CTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE--CSSEEEEEESCGGGCTTCBEEEEEEC--SSSS
T ss_pred CCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE--eCCEEEEEEecCCCCCceEEEEEEeC--CCCC
Confidence 5554 555 467789999999999988889999998887776644 89999999987 4445689999998 3221
Q ss_pred CCCCCeeeCC-----CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEE
Q 008873 228 TLEAPVKLTN-----GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQ 302 (550)
Q Consensus 228 ~~~~~~~lt~-----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 302 (550)
.++++|+. ..+...+.|||||+++++.+++.+.| .++++++.+|+..+.+..+......+....++.++.++
T Consensus 396 --~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (719)
T 1z68_A 396 --PSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKK 472 (719)
T ss_dssp --CCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEE
T ss_pred --CCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEE
Confidence 12466764 23467789999999999998887776 78899988887555555442222346667788889999
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHH-HhCCcEEEEECCCCCCCCchhhH
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l-~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
+++.+ ..++++++.|++.. ..+++|+||++||+++.......|... +...+ +++||+|+++|+||+|+++..+.
T Consensus 473 ~~~~~-~~l~~~~~~P~~~~-~~~~~p~vl~~hG~~~~~~~~~~~~~~---~~~~l~~~~G~~v~~~d~rG~g~~~~~~~ 547 (719)
T 1z68_A 473 LEVDE-ITLWYKMILPPQFD-RSKKYPLLIQVYGGPCSQSVRSVFAVN---WISYLASKEGMVIALVDGRGTAFQGDKLL 547 (719)
T ss_dssp EEETT-EEEEEEEEECTTCC-SSSCEEEEEEECCCTTBCCCCCCCCCC---HHHHHHHTTCCEEEEEECTTBSSSCHHHH
T ss_pred EecCC-eEEEEEEEeCCCCC-CCCCccEEEEECCCCCcCcccccchhh---HHHHHHhcCCeEEEEEcCCCCCCCchhhH
Confidence 99987 89999999998753 236789999999998876444444322 24444 57999999999999999998887
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhcc
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 461 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 461 (550)
......++...++|+.++++++.+++.+|.+||+|+||||||++++.++.++|++|+++|+.+|+.++..+...+.++++
T Consensus 548 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~ 627 (719)
T 1z68_A 548 YAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFM 627 (719)
T ss_dssp GGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBHHHHHHHH
T ss_pred HHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhccccchhhc
Confidence 77776777677899999999999988899999999999999999999999999999999999999999888777777777
Q ss_pred CCC--CCCccccccCChhhhhhcCCC-cEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHH
Q 008873 462 GLP--SEDPVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538 (550)
Q Consensus 462 g~~--~~~~~~~~~~~~~~~~~~i~~-P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~ 538 (550)
+.| ....+.|...++...++++++ |+||+||+.|.++|++++.+++++|++.+++++++++|+++|.+ ..++...+
T Consensus 628 g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~~ 706 (719)
T 1z68_A 628 GLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHL 706 (719)
T ss_dssp CCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHHH
T ss_pred CCcccccchhhhhhCCHhHHHhcCCCCcEEEEEeCCCCCcCHHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHHH
Confidence 777 445567888888889999998 89999999999999999999999999999999999999999998 55667889
Q ss_pred HHHHHHHHHHhC
Q 008873 539 EERIWEFIERTL 550 (550)
Q Consensus 539 ~~~~~~fl~~~l 550 (550)
++.+.+||+++|
T Consensus 707 ~~~i~~fl~~~l 718 (719)
T 1z68_A 707 YTHMTHFLKQCF 718 (719)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-52 Score=447.00 Aligned_cols=483 Identities=17% Similarity=0.189 Sum_probs=371.4
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC------CceEEEEcc
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG------GPVSWMDLQ 77 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~------~~~~~l~~~ 77 (550)
..++.|||||++|+|++.+.... +.......|+++|+++ ++.++++.
T Consensus 132 ~~~~~~spDg~~l~~~~~~~~~~--------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~- 184 (662)
T 3azo_A 132 WADPVLLPERGEVWCMAEEFTGE--------------------------GPSDVRRFLAAVPLDGSAAADRSAVRELSD- 184 (662)
T ss_dssp EEEEEEETTTTEEEEEEEEECSS--------------------------STTCEEEEEEEEETTSTTTTCGGGSEESSC-
T ss_pred ccCcEECCCCCEEEEEEecccCC--------------------------CCCCceeEEEEEECCCCccccCCceeEEEe-
Confidence 46788999999999998653210 0112346899999999 77776630
Q ss_pred cCCCCCCCCCceeEEEEECCCCeEEEEEEecCC----CceEEEEEECC-CC---ceEEEEEeecCceeeccCccccCCCC
Q 008873 78 CGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ----TKLKVLKFDIK-TG---QRKVILVEELDSWVNLHDCFTPLDKG 149 (550)
Q Consensus 78 ~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~----~~~~l~~~~~~-~g---~~~~l~~~~~~~~~~~~~~~~~~~~~ 149 (550)
.....+..++|||||+.|++...... ...+||+++++ +| +.++|+..... .. ..+
T Consensus 185 -------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~-----~~~---- 247 (662)
T 3azo_A 185 -------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AI-----AQA---- 247 (662)
T ss_dssp -------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CE-----EEE----
T ss_pred -------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eE-----cce----
Confidence 22346677899999999988764432 23689999999 57 66666653211 11 111
Q ss_pred CccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEE--------EeEeecCCEEEEEEcCCCCceeEEEEEE
Q 008873 150 VTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQI--------VGVNEASGQVYFTGTLDGPLESHLYCAK 220 (550)
Q Consensus 150 ~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~--------~~~s~dg~~l~f~~~~~~~~~~~l~~v~ 220 (550)
.|++|+ ++|.++++|..+||++++++++.++|+.+...+..+ ..++++++ ++|+++. + ..+||.++
T Consensus 248 -~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~--~~~l~~~d 322 (662)
T 3azo_A 248 -EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-G--AAVLGILD 322 (662)
T ss_dssp -EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-S--SCEEEEEE
T ss_pred -EECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-C--ccEEEEEE
Confidence 345544 888888888889999999888888888764332111 22455654 6777766 4 47999999
Q ss_pred eCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeE
Q 008873 221 LYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDI 300 (550)
Q Consensus 221 ~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (550)
+ +++ +.++|+...+.....++++++.++++.++...|+.+|++++.+++ .+.++... ...+....+..++.
T Consensus 323 ~--~~~----~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~--~~~~~~~~~~~~~~ 393 (662)
T 3azo_A 323 P--ESG----ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR-ARTIGARH--TDPVDPAYYPEPQI 393 (662)
T ss_dssp T--TTT----EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC-EEEEESCC--CCSSCGGGSCCCEE
T ss_pred C--CCC----cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc-eEEeecCC--cccCCccccCcceE
Confidence 8 443 456776544433322378888999999999999999999997776 45665432 23445566778899
Q ss_pred EEEEcCCCcEEEEEEEcCCCCC---CCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 301 VQIQANDGTVLYGALYKPDESR---YGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~---~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
+.+++.+|..++++++.|.+.. ...+++|+||++||+++.... ..|...++.|+++||+|+++|+||++++|
T Consensus 394 ~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~-----~~~~~~~~~l~~~G~~v~~~d~rG~~~~G 468 (662)
T 3azo_A 394 RTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVP-----AVLDLDVAYFTSRGIGVADVNYGGSTGYG 468 (662)
T ss_dssp EEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCC-----CSCCHHHHHHHTTTCEEEEEECTTCSSSC
T ss_pred EEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCc-----ccchHHHHHHHhCCCEEEEECCCCCCCcc
Confidence 9999989999999999998642 012578999999999876531 23445688999999999999999999999
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc----
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---- 453 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---- 453 (550)
..+.......++..+++|+.++++++.+++.+|++||+|+||||||+++++++.+ |++|+++++.+|+.++..+.
T Consensus 469 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~ 547 (662)
T 3azo_A 469 RAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGT 547 (662)
T ss_dssp HHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTTCS
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhcccc
Confidence 9888776667777789999999999999988999999999999999999999886 99999999999998864321
Q ss_pred ----chhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 454 ----TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 454 ----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
..+.+.+++.+..+.+.|...+|+.+++++++|+|++||++|.+||+.++.+++++|++.+++++++++|+++|.+
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 627 (662)
T 3azo_A 548 HDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGF 627 (662)
T ss_dssp CGGGTTHHHHHTCCTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCCCEEEEEETTCCSSC
T ss_pred cchhhHhHHHHhCCCccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 1233445566556777888889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcHHHHHHHHHHHHHHhC
Q 008873 530 RRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 530 ~~~~~~~~~~~~~~~fl~~~l 550 (550)
...++...+++.+++||.++|
T Consensus 628 ~~~~~~~~~~~~~~~fl~~~l 648 (662)
T 3azo_A 628 RRKETMVRALEAELSLYAQVF 648 (662)
T ss_dssp CSHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHh
Confidence 766778889999999999876
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-50 Score=423.90 Aligned_cols=452 Identities=20% Similarity=0.231 Sum_probs=350.9
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||+.++|++..... +.+||+++++.++++..
T Consensus 113 ~~~~~s~dg~~~~~~s~~~~~-----------------------------------~~l~d~~~g~~~~l~~~------- 150 (582)
T 3o4h_A 113 RILSGVDTGEAVVFTGATEDR-----------------------------------VALYALDGGGLRELARL------- 150 (582)
T ss_dssp EEEEEEECSSCEEEEEECSSC-----------------------------------EEEEEEETTEEEEEEEE-------
T ss_pred eeeeeCCCCCeEEEEecCCCC-----------------------------------ceEEEccCCcEEEeecC-------
Confidence 356799999999997654322 23679999988877532
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 163 (550)
.. ..++|||||+.|++...+..+...||++|+++|+.++|+.... .. .. + .|+||+ .++.+++
T Consensus 151 --~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~--~~-~~----~-----~~SpDG~~l~~~~~ 214 (582)
T 3o4h_A 151 --PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEG--SF-SS----A-----SISPGMKVTAGLET 214 (582)
T ss_dssp --SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSC--EE-EE----E-----EECTTSCEEEEEEC
T ss_pred --CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCC--cc-cc----c-----eECCCCCEEEEccC
Confidence 11 5689999999999887776555679999999999988864322 11 11 1 356665 5557778
Q ss_pred CCccEEEEEeCCCceeecccccCeEEEEE-------EeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC
Q 008873 164 TGFRHLYLHDINGTCLGPITEGDWMVEQI-------VGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 236 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~~~~~~~-------~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt 236 (550)
+|..+||++|+++++.+.++..+..+..+ ..||||| .++|+++.++ ..+||.+ | +..+ +
T Consensus 215 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g--~~~l~~~-----g-----~~~~-~ 280 (582)
T 3o4h_A 215 AREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREG--RSAVFID-----G-----ERVE-A 280 (582)
T ss_dssp SSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETT--EEEEEET-----T-----EEEC-C
T ss_pred CCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCC--cEEEEEE-----C-----Ceec-c
Confidence 88889999999988877444333322211 1299999 8888888765 4778765 2 1122 2
Q ss_pred CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEEEE
Q 008873 237 NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALY 316 (550)
Q Consensus 237 ~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 316 (550)
......++++| ||+. +++.++...|+++++++.. + ..++|. ..+.. ...+...+.+.+++.+|..++++++
T Consensus 281 ~~~~v~~~~~s-dg~~-l~~~s~~~~p~~l~~~d~~-~-~~~~l~----~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~ 351 (582)
T 3o4h_A 281 PQGNHGRVVLW-RGKL-VTSHTSLSTPPRIVSLPSG-E-PLLEGG----LPEDL-RRSIAGSRLVWVESFDGSRVPTYVL 351 (582)
T ss_dssp CSSEEEEEEEE-TTEE-EEEEEETTEEEEEEEETTC-C-EEECCC----CCHHH-HHTEEEEEEEEEECTTSCEEEEEEE
T ss_pred CCCceEEEEec-CCEE-EEEEcCCCCCCeEEEEcCC-C-ceEEEe----cCCcc-ccccCcceEEEEECCCCCEEEEEEE
Confidence 22346677888 8765 4677788899999999874 3 445551 11111 1456678999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHH
Q 008873 317 KPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQ 396 (550)
Q Consensus 317 ~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~ 396 (550)
.|.+.. +++|+||++||++.... . ..|...++.|+++||.|+++|+||++++|..+.......++...++|+
T Consensus 352 ~p~~~~---~~~p~vv~~HG~~~~~~-~----~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~~~~~~~d~ 423 (582)
T 3o4h_A 352 ESGRAP---TPGPTVVLVHGGPFAED-S----DSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDV 423 (582)
T ss_dssp EETTSC---SSEEEEEEECSSSSCCC-C----SSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHH
T ss_pred cCCCCC---CCCcEEEEECCCccccc-c----cccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhhhcccccHHHH
Confidence 998753 47899999999887643 1 234557889999999999999999999998888777777777789999
Q ss_pred HHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-----h--hhhhccCCCCCCcc
Q 008873 397 LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-----F--YTEKYMGLPSEDPV 469 (550)
Q Consensus 397 ~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~--~~~~~~g~~~~~~~ 469 (550)
.++++++.+++.+| +|+|+||||||++++.++.++|++|+++++.+|+.++..+.. . +.+.+++ .+.+
T Consensus 424 ~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 498 (582)
T 3o4h_A 424 SAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG---GSRE 498 (582)
T ss_dssp HHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHHHHTT---TCHH
T ss_pred HHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHHHHcC---cCHH
Confidence 99999999998777 999999999999999999999999999999999988754321 1 3344444 5677
Q ss_pred ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 470 GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 470 ~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+...+|+..+.++++|+|++||++|.++|+.++.+++++|+..+++++++++|+++|.+...++..++++.+++||+++
T Consensus 499 ~~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~ 578 (582)
T 3o4h_A 499 IMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQ 578 (582)
T ss_dssp HHHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHHHHHHHhCCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999876678889999999999987
Q ss_pred C
Q 008873 550 L 550 (550)
Q Consensus 550 l 550 (550)
|
T Consensus 579 l 579 (582)
T 3o4h_A 579 R 579 (582)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=417.87 Aligned_cols=483 Identities=14% Similarity=0.105 Sum_probs=355.1
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCce--EEEEcccCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV--SWMDLQCGGT 81 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~--~~l~~~~~~~ 81 (550)
..++.|| ||+.|+|++.++..... .. ..+...+|+++++.++.. +.+...
T Consensus 177 ~~~~~Ws-Dg~~l~y~~~~~~~~~~--~~---------------------~~~~~~~v~~~~lgt~~~~~~~v~~~---- 228 (693)
T 3iuj_A 177 FSGISWL-GNEGFFYSSYDKPDGSE--LS---------------------ARTDQHKVYFHRLGTAQEDDRLVFGA---- 228 (693)
T ss_dssp SCCCEEE-TTTEEEEEESSCCC------------------------------CCCCEEEEEETTSCGGGCEEEESC----
T ss_pred eccEEEe-CCCEEEEEEecCccccc--cc---------------------ccCCCcEEEEEECCCCcccceEEEec----
Confidence 4678999 99999999876431000 00 001124689999988654 333221
Q ss_pred CCCC-CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC--ceEEEEEeecCceeeccCccccCCCCCccCCCcEE
Q 008873 82 DQNY-DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG--QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI 158 (550)
Q Consensus 82 ~~~~-~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (550)
.+ .+.....+.|||||+.|++...+....++||+++++++ +.++|+...+..+.. + ..+++.++
T Consensus 229 --~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~----~-------~~~g~~l~ 295 (693)
T 3iuj_A 229 --IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL----V-------DNKGSTLY 295 (693)
T ss_dssp --SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE----E-------EEETTEEE
T ss_pred --CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE----E-------eccCCEEE
Confidence 11 12345678999999998888766655568999999887 567776543322111 0 11345588
Q ss_pred EEEccCC-ccEEEEEeCCCcee---ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCee
Q 008873 159 WASEKTG-FRHLYLHDINGTCL---GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK 234 (550)
Q Consensus 159 ~~s~~~g-~~~l~~~~~~~~~~---~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~ 234 (550)
+.+++++ ..+|+++++++++. +.|+.+...+. .|+++++.|++....++ ...|+.+++ +|. ..+.
T Consensus 296 ~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g--~~~l~~~d~--~g~----~~~~ 364 (693)
T 3iuj_A 296 LLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDA--TARVEQFDY--EGK----RVRE 364 (693)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETT--EEEEEEECT--TSC----EEEE
T ss_pred EEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECC--eeEEEEEEC--CCC----eeEE
Confidence 8888765 67999999987654 66766543322 58999999999988765 367888887 443 3455
Q ss_pred eCCC-Cc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEE
Q 008873 235 LTNG-KG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLY 312 (550)
Q Consensus 235 lt~~-~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (550)
++.. .+ ...+.+++|++.+++.+++..+|+.+|++++.+++ .+.+..... .+... ....+.+.+++.||..|+
T Consensus 365 l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~-~~~l~~~~~---~~~~~-~~~~~~~~~~~~dg~~i~ 439 (693)
T 3iuj_A 365 VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA-ISLYRASAA---PFKPE-DYVSEQRFYQSKDGTRVP 439 (693)
T ss_dssp ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC-EEEEECCCS---SCCGG-GEEEEEEEEECTTSCEEE
T ss_pred eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe-EEEEEeCCC---CcChh-hCeeEEEEEecCCCcEEE
Confidence 5532 23 33446788999999999999999999999997776 455554322 12222 235789999999999999
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCc
Q 008873 313 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 392 (550)
Q Consensus 313 ~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~ 392 (550)
++++.|++.. ..++.|+||++|||++... . +.+....+.|+++||+|+++|+||+|++|..|........+...
T Consensus 440 ~~l~~p~~~~-~~~~~P~ll~~hGg~~~~~-~----~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~ 513 (693)
T 3iuj_A 440 LIISYRKGLK-LDGSNPTILYGYGGFDVSL-T----PSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNV 513 (693)
T ss_dssp EEEEEESSCC-CSSCCCEEEECCCCTTCCC-C----CCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHH
T ss_pred EEEEecCCCC-CCCCccEEEEECCCCCcCC-C----CccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCCc
Confidence 9999998742 2367899999999977643 1 23444467888999999999999999999999887766666667
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch-----hhhhccCCCCCC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-----YTEKYMGLPSED 467 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~g~~~~~ 467 (550)
++|+++++++|.+++.+|++||+|+|+|+||++++.++.++|++|+|+|+.+|+.|+..+... +... .|.|...
T Consensus 514 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~-~g~p~~~ 592 (693)
T 3iuj_A 514 FDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYD-YGTSADS 592 (693)
T ss_dssp HHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHH-HCCTTSC
T ss_pred HHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHH-cCCccCH
Confidence 899999999999999999999999999999999999999999999999999999998654321 1112 2555443
Q ss_pred cc---ccccCChhhhhhc-CCCc-EEEEecCCCCCCChHHHHHHHHHHHHc---CCCeEEEEcCCCCCcCCCC-CcHHHH
Q 008873 468 PV---GYEYSSVMHHVHK-MKGK-LLLVHGMIDENVHFRHTARLINALVAA---RKPYEILIFPDERHMPRRH-RDRIYM 538 (550)
Q Consensus 468 ~~---~~~~~~~~~~~~~-i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~---~~~~~~~~~p~~~H~~~~~-~~~~~~ 538 (550)
.. .+...+|+.++.+ ++.| +||+||++|.+||+.++.+++++|++. +++++++++++++|++... .+..+.
T Consensus 593 ~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~ 672 (693)
T 3iuj_A 593 EAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQ 672 (693)
T ss_dssp HHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHHH
Confidence 33 3567799999999 8987 999999999999999999999999998 4799999999999998653 567788
Q ss_pred HHHHHHHHHHhC
Q 008873 539 EERIWEFIERTL 550 (550)
Q Consensus 539 ~~~~~~fl~~~l 550 (550)
+..+++||.++|
T Consensus 673 ~~~~~~fl~~~l 684 (693)
T 3iuj_A 673 SADIYAFTLYEM 684 (693)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 889999999876
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-48 Score=414.95 Aligned_cols=479 Identities=14% Similarity=0.111 Sum_probs=348.3
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE-EEEcccCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQ 83 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~ 83 (550)
.++.|||||++|+|++.+... ...+||++++.++... .+...
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~-------------------------------~~~~v~~~~lgt~~~~~~lv~~------ 266 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETL-------------------------------RENKVWRHVMGKLQSEDVCLYE------ 266 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTC-------------------------------CEEEEEEEETTSCGGGCEEEEE------
T ss_pred eeEEEecCCCEEEEEEECCCC-------------------------------CCCEEEEEECCCCchhcEEEEe------
Confidence 578999999999999875321 0146899999887532 22111
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC--ce--EEEEEeec-CceeeccCccccCCCCCc-cCCCcE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG--QR--KVILVEEL-DSWVNLHDCFTPLDKGVT-KYSGGF 157 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g--~~--~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (550)
.........+.|||||+.|++...+. ..++||+++++++ +. +.|+.... ..| ++ . ..++.+
T Consensus 267 ~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~-------s~-----~~~~g~~l 333 (751)
T 2xe4_A 267 EHNPLFSAFMYKAADTNTLCIGSQSP-ETAEVHLLDLRKGNAHNTLEIVRPREKGVRY-------DV-----QMHGTSHL 333 (751)
T ss_dssp CCCTTCEEEEEECTTSSEEEEEEECS-SCEEEEEEESSSCTTCCCEEESSCCCTTCCE-------EE-----EEETTTEE
T ss_pred cCCCceEEEEEECCCCCEEEEEecCC-CCceEEEEECCCCCCCceeEEeecCCCCceE-------EE-----eeeeCCEE
Confidence 11123456789999999888877554 4678999999986 44 55543221 122 11 1 124458
Q ss_pred EEEEccC--CccEEEEEeCCC-ceeec-ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCC-----CCCCC
Q 008873 158 IWASEKT--GFRHLYLHDING-TCLGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP-----DWNHT 228 (550)
Q Consensus 158 ~~~s~~~--g~~~l~~~~~~~-~~~~~-lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~-----~g~~~ 228 (550)
+|.++++ ++.+||++++++ ++.+. |+...+++. +..++.+++.|+|....++ ...|+.+++.. +++
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~-l~~~~~~~~~lv~~~~~~g--~~~l~~~dl~~~~~~~~~g-- 408 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVF-MESIAVRSNYLVVAGRRAG--LTRIWTMMADSQDGVFKAG-- 408 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEE-EEEEEECSSEEEEEEEETT--EEEEEEEECCTTTSCCCTT--
T ss_pred EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcE-EEEEEEECCEEEEEEEeCC--EEEEEEEecccccccccCC--
Confidence 8888885 688999999875 45566 555444332 2236667889999998776 37888888510 222
Q ss_pred CCC-CeeeCCCCceEEEEE------CCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEE
Q 008873 229 LEA-PVKLTNGKGKHVAVL------DHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIV 301 (550)
Q Consensus 229 ~~~-~~~lt~~~~~~~~~~------s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~ 301 (550)
+ .+.|+.........+ +++++.+++++++..+|+.+|++++.+++ .+.++..... ..++...+ .++.+
T Consensus 409 --~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~-~~~l~~~~~~-~~~~~~~~-~~~~~ 483 (751)
T 2xe4_A 409 --TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS-RTAVKVREVG-GGFDAANY-KVERR 483 (751)
T ss_dssp --TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC-EEEEEECCCC-TTCCGGGE-EEEEE
T ss_pred --ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc-EEEEeccccc-cCCCccce-EEEEE
Confidence 3 566654332222233 56888999999999999999999998776 4555543211 12222222 46899
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
.+++.||..|+++++.|++.. ..+++|+||++|||++... .. .|....+.|+++||+|+++|+||+|++|..|.
T Consensus 484 ~~~s~dG~~i~~~l~~p~~~~-~~~~~P~vl~~HGg~~~~~-~~----~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~ 557 (751)
T 2xe4_A 484 FATAPDQTKIPLSVVYHKDLD-MSQPQPCMLYGYGSYGLSM-DP----QFSIQHLPYCDRGMIFAIAHIRGGSELGRAWY 557 (751)
T ss_dssp EEECTTCCEEEEEEEEETTSC-TTSCCCEEEECCCCTTCCC-CC----CCCGGGHHHHTTTCEEEEECCTTSCTTCTHHH
T ss_pred EEECCCCcEEEEEEEcCCCCC-CCCCccEEEEECCCCCcCC-CC----cchHHHHHHHhCCcEEEEEeeCCCCCcCcchh
Confidence 999999999999999998742 2367899999999987653 22 23334678899999999999999999999988
Q ss_pred H-HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-----ch
Q 008873 382 A-SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-----TF 455 (550)
Q Consensus 382 ~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~ 455 (550)
. .....++...++|+++++++|.+++++|++||+|+|+|+||+++++++.++|++|+|+|+.+|+.++..+. ..
T Consensus 558 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~ 637 (751)
T 2xe4_A 558 EIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPL 637 (751)
T ss_dssp HTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTT
T ss_pred hccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchHHhhhcccCccc
Confidence 7 66666666779999999999999998999999999999999999999999999999999999999875421 00
Q ss_pred hhh--hccCCCCCCcc---ccccCChhhhhhcCCCc-EEEEecCCCCCCChHHHHHHHHHHHHcC---CCeEEEEcCCCC
Q 008873 456 YTE--KYMGLPSEDPV---GYEYSSVMHHVHKMKGK-LLLVHGMIDENVHFRHTARLINALVAAR---KPYEILIFPDER 526 (550)
Q Consensus 456 ~~~--~~~g~~~~~~~---~~~~~~~~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~~---~~~~~~~~p~~~ 526 (550)
... ...+.| .+++ .+...+|+.+++++++| +||+||++|.+||+.++.+++++|++.+ ..+.+.++|+++
T Consensus 638 ~~~~~~~~g~p-~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g 716 (751)
T 2xe4_A 638 TTGEWEEWGNP-NEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESG 716 (751)
T ss_dssp HHHHTTTTCCT-TSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSCTHHHHHHHHHHHHHCCSCCCEEEEEETTCC
T ss_pred chhhHHHcCCC-CCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEECCCCC
Confidence 011 112444 3332 34567888999999997 9999999999999999999999999985 456677789999
Q ss_pred CcCCCCC-cHHHHHHHHHHHHHHhC
Q 008873 527 HMPRRHR-DRIYMEERIWEFIERTL 550 (550)
Q Consensus 527 H~~~~~~-~~~~~~~~~~~fl~~~l 550 (550)
|++.... +.......+++||.++|
T Consensus 717 H~~~~~~~~~~~~~~~~~~Fl~~~l 741 (751)
T 2xe4_A 717 HFSAKDRYKFWKESAIQQAFVCKHL 741 (751)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCChhHHHHHHHHHHHHHHHHh
Confidence 9985433 45566778999999876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=411.94 Aligned_cols=491 Identities=15% Similarity=0.134 Sum_probs=356.4
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE--EEEcccCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS--WMDLQCGGT 81 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~--~l~~~~~~~ 81 (550)
..++.|||||+.|+|++.+...... .+. ....+...+|+++++.+++.. .+...
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~------~~~--------------~~~~~~~~~v~~~~l~t~~~~~~~v~~~---- 228 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKS------DGT--------------ETSTNLHQKLYYHVLGTDQSEDILCAEF---- 228 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCC------SSS--------------CCCCCCCCEEEEEETTSCGGGCEEEECC----
T ss_pred cceEEEEeCCCEEEEEEECCccccc------ccc--------------ccccCCCCEEEEEECCCCcccceEEecc----
Confidence 3578999999999999876432100 000 001122357999999987642 22111
Q ss_pred CCCCCCceeEEEEECCCCeEEEEEEecCCC-ceEEEEEECCC------C--ceEEEEEeecCceeeccCccccCCCCCcc
Q 008873 82 DQNYDEEYLARVNWMHGNILTAQVLNRSQT-KLKVLKFDIKT------G--QRKVILVEELDSWVNLHDCFTPLDKGVTK 152 (550)
Q Consensus 82 ~~~~~~~~~~~~~wspDg~~i~~~~~r~~~-~~~l~~~~~~~------g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 152 (550)
.........+.|||||+.|++...+... ..+||++++++ + +.++|+........ .++ .
T Consensus 229 --~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~----~~s-------~ 295 (710)
T 2xdw_A 229 --PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD----YVT-------N 295 (710)
T ss_dssp --TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE----EEE-------E
T ss_pred --CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE----EEe-------c
Confidence 1223456789999999999888776543 57899999987 6 46676653322111 011 1
Q ss_pred CCCcEEEEEccCC-ccEEEEEeCCCce---eeccccc-C-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 153 YSGGFIWASEKTG-FRHLYLHDINGTC---LGPITEG-D-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 153 ~~~~~~~~s~~~g-~~~l~~~~~~~~~---~~~lT~~-~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
+++.+++.+++++ ..+|+++++++++ .+.|+.+ + ..+..+. |+ +++.|++++..++ ...|+.+++. +|.
T Consensus 296 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~-~~-~~~~lv~~~~~~g--~~~l~~~~~~-~g~ 370 (710)
T 2xdw_A 296 EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA-CV-RSNFLVLCYLHDV--KNTLQLHDLA-TGA 370 (710)
T ss_dssp ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEE-EE-TTTEEEEEEEETT--EEEEEEEETT-TCC
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEE-EE-cCCEEEEEEEECC--EEEEEEEECC-CCC
Confidence 3444777887654 6799999987764 3666654 3 2444443 66 4568888887765 3678888872 332
Q ss_pred CCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce-eEeccCCCCChhhhhcCCCCCCeEEEEE
Q 008873 227 HTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL-VLPLYEQPLTVPRIKRLQLEPPDIVQIQ 304 (550)
Q Consensus 227 ~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (550)
..+.|+...+ ...++++|+++.+++++++..+|+.+|++++.+++. .+.+..... ..++.. ....+.+.++
T Consensus 371 ----~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~--~~~~~~-~~~~~~~~~~ 443 (710)
T 2xdw_A 371 ----LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTV--KGIDAS-DYQTVQIFYP 443 (710)
T ss_dssp ----EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCC--TTCCGG-GEEEEEEEEE
T ss_pred ----EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeeccc--CCcCcc-ccEEEEEEEE
Confidence 2455665444 455678999999999999999999999999987762 344443221 122221 2356899999
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCchhhHHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
+.||..|+++++.|++.. ..++.|+||++|||++... . ..+......|++ +||+|+++|+||+|++|..|...
T Consensus 444 ~~dg~~i~~~~~~p~~~~-~~~~~P~vl~~hGg~~~~~-~----~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~ 517 (710)
T 2xdw_A 444 SKDGTKIPMFIVHKKGIK-LDGSHPAFLYGYGGFNISI-T----PNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKG 517 (710)
T ss_dssp CTTSCEEEEEEEEETTCC-CSSCSCEEEECCCCTTCCC-C----CCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHT
T ss_pred cCCCCEEEEEEEecCCCC-CCCCccEEEEEcCCCCCcC-C----CcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHh
Confidence 999999999999998742 2367899999999987653 1 123333456677 99999999999999999988876
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch-----hhh
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-----YTE 458 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~ 458 (550)
....++...++|+++++++|.+++++|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+... +..
T Consensus 518 ~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~ 597 (710)
T 2xdw_A 518 GILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTT 597 (710)
T ss_dssp TSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHH
T ss_pred hhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChhHHH
Confidence 665666667899999999999999899999999999999999999999999999999999999987654321 222
Q ss_pred hccCCCCC--CccccccCChhhhhh-----cCCC-cEEEEecCCCCCCChHHHHHHHHHHHHc-------CCCeEEEEcC
Q 008873 459 KYMGLPSE--DPVGYEYSSVMHHVH-----KMKG-KLLLVHGMIDENVHFRHTARLINALVAA-------RKPYEILIFP 523 (550)
Q Consensus 459 ~~~g~~~~--~~~~~~~~~~~~~~~-----~i~~-P~lii~G~~D~~v~~~~~~~~~~~l~~~-------~~~~~~~~~p 523 (550)
.+ +.+.. ..+.+...+|+.++. +++. |+||+||++|.+||+.++.+++++|++. +.++++++++
T Consensus 598 ~~-g~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 676 (710)
T 2xdw_A 598 DY-GCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDT 676 (710)
T ss_dssp HH-CCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEEEEEES
T ss_pred hC-CCCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcCEEEEEeC
Confidence 22 44421 123455678888888 7886 9999999999999999999999999988 8899999999
Q ss_pred CCCCcCCCC-CcHHHHHHHHHHHHHHhC
Q 008873 524 DERHMPRRH-RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 524 ~~~H~~~~~-~~~~~~~~~~~~fl~~~l 550 (550)
+++|++... ....+.+..+++||.++|
T Consensus 677 ~~gH~~~~~~~~~~~~~~~~~~fl~~~l 704 (710)
T 2xdw_A 677 KAGHGAGKPTAKVIEEVSDMFAFIARCL 704 (710)
T ss_dssp SCCSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999998654 345788899999998874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=411.71 Aligned_cols=482 Identities=14% Similarity=0.124 Sum_probs=356.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCce--EEEEcccCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV--SWMDLQCGGTD 82 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~ 82 (550)
.++.|||||+.|+|++.+...... . ...+...+|+++++.+++. +.+...
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~--------------~---------~~~~~~~~v~~~~l~t~~~~~~lv~~~----- 222 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIK--------------V---------DERPGYTTIRYHTLGTEPSKDTVVHER----- 222 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSC--------------G---------GGGGGGCEEEEEETTSCGGGCEEEECC-----
T ss_pred cceEEecCCCEEEEEEecCCCCCc--------------c---------ccCCCCCEEEEEECCCCchhceEEEec-----
Confidence 678999999999999876432100 0 0011235799999998863 233221
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEc
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASE 162 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 162 (550)
.+....+..+.|||||+.|++...+.....+||+++..+++.++|+......+. +.. .+++ +++.++
T Consensus 223 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-------~~~----~~g~-l~~~s~ 289 (695)
T 2bkl_A 223 -TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE-------VHA----WKDR-FYVLTD 289 (695)
T ss_dssp -CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE-------EEE----ETTE-EEEEEC
T ss_pred -CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE-------EEe----cCCc-EEEEEC
Confidence 122345678999999998888766653456899999888888888865433221 110 1234 777777
Q ss_pred cC-CccEEEEEeCCCce---eeccccc--CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC
Q 008873 163 KT-GFRHLYLHDINGTC---LGPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT 236 (550)
Q Consensus 163 ~~-g~~~l~~~~~~~~~---~~~lT~~--~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt 236 (550)
.+ +...|+++++++++ .+.|+.+ +..+..+. ++ ++.|+++...++ ...|+.+++ +|. ..+.++
T Consensus 290 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~-~~--~~~lv~~~~~dg--~~~l~~~~~--~g~----~~~~l~ 358 (695)
T 2bkl_A 290 EGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS-IV--GGHLSLEYLKDA--TSEVRVATL--KGK----PVRTVQ 358 (695)
T ss_dssp TTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE-EE--TTEEEEEEEETT--EEEEEEEET--TCC----EEEECC
T ss_pred CCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE-EE--CCEEEEEEEECC--EEEEEEEeC--CCC----eeEEec
Confidence 54 46899999987765 3666654 44455443 55 567888887765 378888887 443 344454
Q ss_pred CC-Cc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEEEE
Q 008873 237 NG-KG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGA 314 (550)
Q Consensus 237 ~~-~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 314 (550)
.. .+ ...++++||++.+++++++..+|+.+|++++.+++ .+.+...... ++. .....+.+.+++.||..|+++
T Consensus 359 ~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~-~~~l~~~~~~---~~~-~~~~~~~~~~~~~dg~~i~~~ 433 (695)
T 2bkl_A 359 LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK-SELWAKVDVP---MNP-EQYQVEQVFYASKDGTKVPMF 433 (695)
T ss_dssp CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC-EEEEEECCCS---SCG-GGEEEEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEEecCCCC---CCH-HHCeEEEEEEECCCCCEEEEE
Confidence 32 23 33456889999999999999999999999998876 4555443221 222 223678999999999999999
Q ss_pred EEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchH
Q 008873 315 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAE 394 (550)
Q Consensus 315 ~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~ 394 (550)
++.|++.. ..++.|+||++|||++... .. .|....+.|+++||+|+++|+||+|++|..|........+...++
T Consensus 434 ~~~p~~~~-~~~~~p~vl~~hGg~~~~~-~~----~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~ 507 (695)
T 2bkl_A 434 VVHRKDLK-RDGNAPTLLYGYGGFNVNM-EA----NFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFD 507 (695)
T ss_dssp EEEETTCC-CSSCCCEEEECCCCTTCCC-CC----CCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred EEECCCCC-CCCCccEEEEECCCCcccc-CC----CcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHH
Confidence 99998742 2367899999999887653 12 233345678899999999999999999998887665556666789
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-----hhhhhccCCCCCC--
Q 008873 395 DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-----FYTEKYMGLPSED-- 467 (550)
Q Consensus 395 D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~g~~~~~-- 467 (550)
|+++++++|.+++++|++||+|+|+||||+++++++.++|++|+++|+.+|+.++..+.. .+...+ +.|...
T Consensus 508 D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~-g~~~~~~~ 586 (695)
T 2bkl_A 508 DFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEY-GTAEKPED 586 (695)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHH-CCTTSHHH
T ss_pred HHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcchHHHh-CCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999998765432 122222 444321
Q ss_pred ccccccCChhhhhhcCC--CcEEEEecCCCCCCChHHHHHHHHHHHH---cCCCeEEEEcCCCCCcCCC-CCcHHHHHHH
Q 008873 468 PVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVA---ARKPYEILIFPDERHMPRR-HRDRIYMEER 541 (550)
Q Consensus 468 ~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~---~~~~~~~~~~p~~~H~~~~-~~~~~~~~~~ 541 (550)
.+.+...+|+..+.+++ +|+||+||++|.+||+.++.+++++|++ .+.+++++++|+++|++.. ..+..+.+..
T Consensus 587 ~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~ 666 (695)
T 2bkl_A 587 FKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSVD 666 (695)
T ss_dssp HHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCSCHHHHHHHHHH
T ss_pred HHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCCCHHHHHHHHHH
Confidence 12345678888888876 6999999999999999999999999998 6789999999999999854 3456778889
Q ss_pred HHHHHHHhC
Q 008873 542 IWEFIERTL 550 (550)
Q Consensus 542 ~~~fl~~~l 550 (550)
+++||.++|
T Consensus 667 ~~~fl~~~l 675 (695)
T 2bkl_A 667 LYSFLFQVL 675 (695)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999999876
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=406.03 Aligned_cols=481 Identities=16% Similarity=0.153 Sum_probs=345.3
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCce--EEEEcccCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV--SWMDLQCGGTD 82 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~ 82 (550)
.++.|||| +.|+|++.+...... .. ...+...+|+++++.++.. +.+...
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~-~~---------------------~~~~~~~~v~~~~lgt~~~~~~lv~~~----- 263 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQ-AF---------------------QALNYNQTVWLHRLGTPQSADQPVFAT----- 263 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC------------------------------CCCCCEEEEEETTSCGGGCEEEECC-----
T ss_pred ccEEEECC-CEEEEEEecCccccc-cc---------------------ccCCCCCEEEEEECCCCchhCEEEecc-----
Confidence 57889999 999999865432100 00 0011124789999988763 222211
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCC-CceEEEEEECCCC--c-eEEEEEeecCceeeccCccccCCCCCccCCCcEE
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKTG--Q-RKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFI 158 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~~g--~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (550)
.+....+..+.|||||+.|++...+.. ..++||+++++++ + .+.|+........ +. ..+++.++
T Consensus 264 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-------~~----~~dg~~l~ 331 (741)
T 1yr2_A 264 -PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD-------FV----DGVGDQLW 331 (741)
T ss_dssp -TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE-------EE----EEETTEEE
T ss_pred -CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE-------EE----eccCCEEE
Confidence 112234678999999998888876542 3568999999988 6 6777654322211 10 01344578
Q ss_pred EEEccCC-ccEEEEEeCCC--ceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCee
Q 008873 159 WASEKTG-FRHLYLHDING--TCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK 234 (550)
Q Consensus 159 ~~s~~~g-~~~l~~~~~~~--~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~ 234 (550)
+.+++++ ..+|+++++++ ++.+.|+.+. ..+.. ++..++.|+++...++ ..+|+.+++ +|. ..+.
T Consensus 332 ~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~---~~~~~~~lv~~~~~dg--~~~l~~~~~--~g~----~~~~ 400 (741)
T 1yr2_A 332 FVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES---VGIAGNRLFASYIHDA--KSQVLAFDL--DGK----PAGA 400 (741)
T ss_dssp EEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE---EEEEBTEEEEEEEETT--EEEEEEEET--TSC----EEEE
T ss_pred EEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE---EEEECCEEEEEEEECC--EEEEEEEeC--CCC----ceee
Confidence 8887654 78999999887 4567777553 23333 3334678988888765 378998887 443 3455
Q ss_pred eCCC-Cc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEEEcCCCcEEE
Q 008873 235 LTNG-KG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQIQANDGTVLY 312 (550)
Q Consensus 235 lt~~-~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (550)
++.. .+ ...++++||++.+++++++..+|+.+|++++.+++ .+.+... . ..++. .....+.+.+++.||..|+
T Consensus 401 l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~-~~~l~~~-~--~~~~~-~~~~~~~~~~~~~dg~~i~ 475 (741)
T 1yr2_A 401 VSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK-TTPWEPV-H--LTFDP-ADFRVEQVFYPSKDGTKVP 475 (741)
T ss_dssp CBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE-EEECSCC-C--CSSCG-GGEEEEEEEEECTTSCEEE
T ss_pred ccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEEecC-C--CCCCh-hHCEEEEEEEEcCCCCEEE
Confidence 6532 33 45567899999999999999999999999998776 4555442 1 12222 2336789999999999999
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCc
Q 008873 313 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 392 (550)
Q Consensus 313 ~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~ 392 (550)
++++.|.+. .++.|+||++|||++... ...+......|+++||+|+++|+||+|++|..|.......++...
T Consensus 476 ~~~~~p~~~---~~~~p~vl~~hGg~~~~~-----~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~ 547 (741)
T 1yr2_A 476 MFIVRRKDA---KGPLPTLLYGYGGFNVAL-----TPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQNV 547 (741)
T ss_dssp EEEEEETTC---CSCCCEEEECCCCTTCCC-----CCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGTHHH
T ss_pred EEEEecCCC---CCCCcEEEEECCCCCccC-----CCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcCCCc
Confidence 999999864 257899999999987643 123334466788999999999999999999988876555555567
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch-----hhhhccCCCCC-
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-----YTEKYMGLPSE- 466 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~g~~~~- 466 (550)
++|+++++++|.+++++|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+... +...+ +.|..
T Consensus 548 ~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~-g~~~~~ 626 (741)
T 1yr2_A 548 FDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDY-GYPEKE 626 (741)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGGHHHH-CCTTSH
T ss_pred HHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchhHHHc-CCCCCH
Confidence 899999999999998899999999999999999999999999999999999999987654321 11222 44432
Q ss_pred -CccccccCChhhhhhc-CCC-cEEEEecCCCCCCChHHHHHHHHHHHH---cCCCeEEEEcCCCCCcCCCC-CcHHHHH
Q 008873 467 -DPVGYEYSSVMHHVHK-MKG-KLLLVHGMIDENVHFRHTARLINALVA---ARKPYEILIFPDERHMPRRH-RDRIYME 539 (550)
Q Consensus 467 -~~~~~~~~~~~~~~~~-i~~-P~lii~G~~D~~v~~~~~~~~~~~l~~---~~~~~~~~~~p~~~H~~~~~-~~~~~~~ 539 (550)
..+.+...+|+.++.+ +++ |+||+||++|.+||+.++.+++++|+. .+.+++++++++++|++... .......
T Consensus 627 ~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH~~~~~~~~~~~~~ 706 (741)
T 1yr2_A 627 ADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQIEET 706 (741)
T ss_dssp HHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEEEC---------CHHHHHHHH
T ss_pred HHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEEEeCCCCcCCCCCHHHHHHHH
Confidence 1234467788888887 884 999999999999999999999999999 88999999999999998553 3446788
Q ss_pred HHHHHHHHHhC
Q 008873 540 ERIWEFIERTL 550 (550)
Q Consensus 540 ~~~~~fl~~~l 550 (550)
..+++||.++|
T Consensus 707 ~~~~~fl~~~l 717 (741)
T 1yr2_A 707 ADVQAFLAHFT 717 (741)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998864
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=352.34 Aligned_cols=425 Identities=14% Similarity=0.112 Sum_probs=306.0
Q ss_pred EEEEECCCCeE----EEEEEecCCCceEEEEEECCC--CceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccC
Q 008873 91 ARVNWMHGNIL----TAQVLNRSQTKLKVLKFDIKT--GQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 164 (550)
Q Consensus 91 ~~~~wspDg~~----i~~~~~r~~~~~~l~~~~~~~--g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 164 (550)
..+.-++|++. ++.........+++|+++++. |+.++|....+...+ ....+.+++....+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~~ 309 (711)
T 4hvt_A 243 VSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDATLQ-------------GSFKEYVFWLLRSD 309 (711)
T ss_dssp EEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCEEE-------------EEETTEEEEECSSC
T ss_pred EEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcceEe-------------eeECCEEEEEECcc
Confidence 34566788873 333323233457899998774 554444221111100 01123344433211
Q ss_pred --------CccEEEEEeCCCc--------eeec-cccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 165 --------GFRHLYLHDINGT--------CLGP-ITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 165 --------g~~~l~~~~~~~~--------~~~~-lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
....|+++++++. +.+. ++.. +..+.++. |. ++.|+++...++. ..|+.+++. +|.
T Consensus 310 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~--~~~l~~~~~~~~~--~~l~~~~~~-~g~ 383 (711)
T 4hvt_A 310 WKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIS-TT--KDRVFLATYDNVV--AKVVTFTLE-NEQ 383 (711)
T ss_dssp EEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEE-EC--SSCEEEEEEETTE--EEEEEECEE-TTE
T ss_pred cccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEE-EE--CCEEEEEEEECCE--EEEEEEECC-CCc
Confidence 2357999987653 2333 5554 33344433 54 4478888887653 678888762 221
Q ss_pred CCCCCCee-eCCC-Cc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCCCCCeEEEE
Q 008873 227 HTLEAPVK-LTNG-KG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQLEPPDIVQI 303 (550)
Q Consensus 227 ~~~~~~~~-lt~~-~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (550)
. ..+. +... .+ ....+.+++++.+++++++..+|+.+|++++. ++ .+.+.... +.+....+ .++.+.+
T Consensus 384 ~---~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~-~~~l~~~~---~~~~~~~~-~~e~v~~ 454 (711)
T 4hvt_A 384 W---TKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE-LKIIRKAL---YSFDSENY-VLEQKEA 454 (711)
T ss_dssp E---CCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC-EEEEECCS---SCCCGGGE-EEEEEEE
T ss_pred e---EEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc-EEEEecCC---cccCcccC-eeEEEEE
Confidence 0 1223 3222 23 34446678899999999999999999999986 54 45555432 23333334 6799999
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHh-HHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~-~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
++.||.+|+++++.|++.. ..+++|+||++|||++... .. .+.... +.|+++||+|+++|+||+|++|..|..
T Consensus 455 ~s~DG~~i~~~l~~P~~~~-~~~~~P~vl~~HGG~~~~~-~~----~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~ 528 (711)
T 4hvt_A 455 TSFDGVKIPYFLVYKKGIK-FDGKNPTLLEAYGGFQVIN-AP----YFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHK 528 (711)
T ss_dssp ECTTSCEEEEEEEEETTCC-CSSCCCEEEECCCCTTCCC-CC----CCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHH
T ss_pred ECCCCeEEEEEEEecCCCC-CCCCccEEEEECCCCCCCC-CC----cccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHH
Confidence 9999999999999998752 2368999999999988754 22 222223 588899999999999999999999998
Q ss_pred HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-----hhh
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-----FYT 457 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~ 457 (550)
.....++...++|+++++++|.+++.+|++||+|+|+|+||+++++++.++|++|+|+|+.+|+.|+..+.. .+.
T Consensus 529 ~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~ 608 (711)
T 4hvt_A 529 SAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWV 608 (711)
T ss_dssp TTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGH
T ss_pred hhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHH
Confidence 888888888899999999999999999999999999999999999999999999999999999999865532 122
Q ss_pred hhccCCCCC--CccccccCChhhhhhcCCC--cEEEEecCCCCCCChHHHHHHHHHH-HHcCCCeEEEEcCCCCCcCCC-
Q 008873 458 EKYMGLPSE--DPVGYEYSSVMHHVHKMKG--KLLLVHGMIDENVHFRHTARLINAL-VAARKPYEILIFPDERHMPRR- 531 (550)
Q Consensus 458 ~~~~g~~~~--~~~~~~~~~~~~~~~~i~~--P~lii~G~~D~~v~~~~~~~~~~~l-~~~~~~~~~~~~p~~~H~~~~- 531 (550)
..+ |.|.. ..+.+...+|+.+++++++ |+||+||++|.+||+.++.+++++| ++.+++++++++|+++|++..
T Consensus 609 ~~~-G~p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~ 687 (711)
T 4hvt_A 609 TEY-GDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSD 687 (711)
T ss_dssp HHH-CCTTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCTTCCEEEEEESSCCSSSCSS
T ss_pred HHh-CCCcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCChHHHHHHHHHHHHHcCCCEEEEEECCCCCcCcCC
Confidence 223 55543 2345677899999999987 9999999999999999999999999 999999999999999999854
Q ss_pred CCcHHHHHHHHHHHHHHhC
Q 008873 532 HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 532 ~~~~~~~~~~~~~fl~~~l 550 (550)
..........+++||.++|
T Consensus 688 ~~~~~~~~~~i~~FL~~~L 706 (711)
T 4hvt_A 688 LKESANYFINLYTFFANAL 706 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHh
Confidence 3445667788899999875
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-27 Score=216.14 Aligned_cols=223 Identities=15% Similarity=0.138 Sum_probs=173.0
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+++++ +|..+.++++.|.+.. ++.|+||++||..+... .+..+++.|+++||.|+++|++|.|++
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~~p~~~~---~~~p~vv~~HG~~g~~~-------~~~~~~~~l~~~G~~v~~~d~~g~g~~ 73 (241)
T 3f67_A 5 IAGETSIPS-QGENMPAYHARPKNAD---GPLPIVIVVQEIFGVHE-------HIRDLCRRLAQEGYLAIAPELYFRQGD 73 (241)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEETTCC---SCEEEEEEECCTTCSCH-------HHHHHHHHHHHTTCEEEEECTTTTTCC
T ss_pred eeeeEEEec-CCcceEEEEecCCCCC---CCCCEEEEEcCcCccCH-------HHHHHHHHHHHCCcEEEEecccccCCC
Confidence 346788888 8889999999998642 56899999999655422 234567889999999999999998776
Q ss_pred chhhHHHHhh---cc----CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc
Q 008873 377 GLKFEASIKH---NC----GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 449 (550)
Q Consensus 377 ~~~~~~~~~~---~~----~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~ 449 (550)
...+...... .. .....+|+.++++++.+++ +|.++|+|+|||+||.+++.++.++|+ ++++++..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~- 150 (241)
T 3f67_A 74 PNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLV- 150 (241)
T ss_dssp GGGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCS-
T ss_pred CCchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEecccc-
Confidence 5433211100 00 0123789999999998887 788999999999999999999999888 566666544311
Q ss_pred ccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 450 DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 450 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
.....+...++...+.++++|+|+++|++|..+|+.++..+++++.+.+.++++.++|+++|.+
T Consensus 151 ----------------~~~~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 214 (241)
T 3f67_A 151 ----------------GEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHAF 214 (241)
T ss_dssp ----------------CCCCSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEETTCCTTT
T ss_pred ----------------CCCccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCcce
Confidence 1123344566778889999999999999999999999999999999999999999999999998
Q ss_pred CC-------CCcHHHHHHHHHHHHHHh
Q 008873 530 RR-------HRDRIYMEERIWEFIERT 549 (550)
Q Consensus 530 ~~-------~~~~~~~~~~~~~fl~~~ 549 (550)
.. .......++.+++||++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 215 NADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp TCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 42 234567889999999875
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=215.03 Aligned_cols=207 Identities=15% Similarity=0.179 Sum_probs=141.5
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
..||.+|+++++.|.+. ++.|+||++||+++... ...+...++.|+++||+|+++|+||+|.++.......
T Consensus 37 ~~dG~~i~g~l~~P~~~----~~~p~Vl~~HG~g~~~~-----~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~~~ 107 (259)
T 4ao6_A 37 EVDGRTVPGVYWSPAEG----SSDRLVLLGHGGTTHKK-----VEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGRE 107 (259)
T ss_dssp EETTEEEEEEEEEESSS----CCSEEEEEEC-------------CHHHHHHHHHHHTTEEEEEECCCC------------
T ss_pred eeCCeEEEEEEEeCCCC----CCCCEEEEeCCCccccc-----chHHHHHHHHHHHCCCeEEeeccCCCCCCCCcccccc
Confidence 45999999999999764 46799999999877642 1234456889999999999999999987654322111
Q ss_pred hhccC---------------CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc
Q 008873 385 KHNCG---------------RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 449 (550)
Q Consensus 385 ~~~~~---------------~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~ 449 (550)
..+.. ...+.|..++++++... +|+++|+++|+|+||++++.++...|+. +++++..+....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pri-~Aav~~~~~~~~ 184 (259)
T 4ao6_A 108 PTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKRI-KVALLGLMGVEG 184 (259)
T ss_dssp -CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTTE-EEEEEESCCTTS
T ss_pred cchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCce-EEEEEecccccc
Confidence 11000 01245677778877654 4889999999999999999999988765 555543332110
Q ss_pred ccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 450 DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 450 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
....++...+.+|++|+|++||++|.+||++++.++++++. ..+..++++|+..|.+
T Consensus 185 ---------------------~~~~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~--~~~k~l~~~~G~H~~~ 241 (259)
T 4ao6_A 185 ---------------------VNGEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLG--TKQKTLHVNPGKHSAV 241 (259)
T ss_dssp ---------------------TTHHHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCC--CSSEEEEEESSCTTCC
T ss_pred ---------------------ccccchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhC--CCCeEEEEeCCCCCCc
Confidence 11123556788999999999999999999999999999883 4567888999844433
Q ss_pred CCCCcHHHHHHHHHHHHHHhC
Q 008873 530 RRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 530 ~~~~~~~~~~~~~~~fl~~~l 550 (550)
...+..+.+++||++||
T Consensus 242 ----p~~e~~~~~~~fl~~hL 258 (259)
T 4ao6_A 242 ----PTWEMFAGTVDYLDQRL 258 (259)
T ss_dssp ----CHHHHTHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHHHHHhc
Confidence 24567788999999997
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-26 Score=225.62 Aligned_cols=229 Identities=15% Similarity=0.110 Sum_probs=175.3
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
...+.+.+++ +|..|+++++.|.+. ++.|+||++||+++... .+....+.|+++||.|+++|+||+|.
T Consensus 125 ~~~~~v~~~~-dg~~i~~~l~~p~~~----~~~P~vl~~hG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~rG~G~ 192 (386)
T 2jbw_A 125 PPAERHELVV-DGIPMPVYVRIPEGP----GPHPAVIMLGGLESTKE-------ESFQMENLVLDRGMATATFDGPGQGE 192 (386)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSSS----CCEEEEEEECCSSCCTT-------TTHHHHHHHHHTTCEEEEECCTTSGG
T ss_pred CCeEEEEEEe-CCEEEEEEEEcCCCC----CCCCEEEEeCCCCccHH-------HHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 5778999998 899999999999864 57899999998765432 12223778889999999999999886
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 455 (550)
+.. ..........++.+++++|.+++.+|.++|+|+|+|+||++++.++.+ +++|+++|+. |+.++......
T Consensus 193 s~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~ 264 (386)
T 2jbw_A 193 MFE------YKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDL 264 (386)
T ss_dssp GTT------TCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGG
T ss_pred CCC------CCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHh
Confidence 511 011111223568899999999888899999999999999999999998 8899999999 98876543221
Q ss_pred hhh-------hccCCC--CCCc-cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHH-HHcCCCeEEEEcCC
Q 008873 456 YTE-------KYMGLP--SEDP-VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL-VAARKPYEILIFPD 524 (550)
Q Consensus 456 ~~~-------~~~g~~--~~~~-~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l-~~~~~~~~~~~~p~ 524 (550)
+.. ...+.+ .... ..+...++...+.++++|+|+++|++|. +|+.++.++++++ .. +++++++|+
T Consensus 265 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~~ 340 (386)
T 2jbw_A 265 ETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEKD 340 (386)
T ss_dssp SCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEETT
T ss_pred ccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeCC
Confidence 111 112221 1111 3345567777889999999999999999 9999999999887 43 689999999
Q ss_pred CCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 525 ERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 525 ~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++|.+ ..+...+.+.+.+||+++|
T Consensus 341 ~gH~~--~~~~~~~~~~i~~fl~~~l 364 (386)
T 2jbw_A 341 GDHCC--HNLGIRPRLEMADWLYDVL 364 (386)
T ss_dssp CCGGG--GGGTTHHHHHHHHHHHHHH
T ss_pred CCcCC--ccchHHHHHHHHHHHHHhc
Confidence 99976 4566788999999999874
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-25 Score=220.65 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=167.7
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
++.+.+. ++ .+.+.++.|++. ++.|+||++||+++.. +...++.|+++||.|+++|+||++++.
T Consensus 135 v~~~~~~--~~-~l~~~l~~P~~~----~~~P~Vv~~hG~~~~~---------~~~~a~~La~~Gy~V~a~D~rG~g~~~ 198 (422)
T 3k2i_A 135 VWRQSVR--AG-RVRATLFLPPGP----GPFPGIIDIFGIGGGL---------LEYRASLLAGHGFATLALAYYNFEDLP 198 (422)
T ss_dssp CEEEEEE--ET-TEEEEEEECSSS----CCBCEEEEECCTTCSC---------CCHHHHHHHTTTCEEEEEECSSSTTSC
T ss_pred cEEEEEe--CC-cEEEEEEcCCCC----CCcCEEEEEcCCCcch---------hHHHHHHHHhCCCEEEEEccCCCCCCC
Confidence 3444443 33 589999999763 5789999999986542 122478899999999999999988665
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 457 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 457 (550)
.. ......+|+.+++++|.++..+|.++|+|+||||||++++.++.++|+ ++++|+.+|..........+.
T Consensus 199 ~~--------~~~~~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~ 269 (422)
T 3k2i_A 199 NN--------MDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYK 269 (422)
T ss_dssp SS--------CSCEETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEET
T ss_pred CC--------cccCCHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhc
Confidence 32 223458999999999999988899999999999999999999999998 899999887753211100000
Q ss_pred hhcc--------------------CCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHH-HHHHHHHHHcCCC
Q 008873 458 EKYM--------------------GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT-ARLINALVAARKP 516 (550)
Q Consensus 458 ~~~~--------------------g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~-~~~~~~l~~~~~~ 516 (550)
.... .....++......+....+.++++|+|++||++|..+|.... ..+.++|.+.+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~ 349 (422)
T 3k2i_A 270 HSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKE 349 (422)
T ss_dssp TEEECCCCBCGGGCEECTTSCEECTTCBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCcCCCcccchhhcccCcchhHHHHHHHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 0000 000001111111222334678899999999999999999866 6888999999988
Q ss_pred -eEEEEcCCCCCcCCCC---------------------------CcHHHHHHHHHHHHHHhC
Q 008873 517 -YEILIFPDERHMPRRH---------------------------RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 517 -~~~~~~p~~~H~~~~~---------------------------~~~~~~~~~~~~fl~~~l 550 (550)
+++++||+++|.+..+ +...+.++.+++||+++|
T Consensus 350 ~~~l~~~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L 411 (422)
T 3k2i_A 350 KPQIICYPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHL 411 (422)
T ss_dssp CCEEEEETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999997321 457789999999999986
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=209.88 Aligned_cols=231 Identities=15% Similarity=0.038 Sum_probs=169.9
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 380 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~ 380 (550)
.++...+|..+.+++..|.... ..++.|+||++|||+...... ..+..+++.|+++||.|+++|+||+|.+....
T Consensus 17 ~~~~~~~g~~l~~~~~~~~~~~-~~~~~p~vv~~HGgg~~~~~~----~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~ 91 (276)
T 3hxk_A 17 STFSLNDTAWVDFYQLQNPRQN-ENYTFPAIIICPGGGYQHISQ----RESDPLALAFLAQGYQVLLLNYTVMNKGTNYN 91 (276)
T ss_dssp EECCCBTTBEEEEECCCC-------CCBCEEEEECCSTTTSCCG----GGSHHHHHHHHHTTCEEEEEECCCTTSCCCSC
T ss_pred ccccCCCCeEEEEEEeCCcccc-cCCCCCEEEEEcCCccccCCc----hhhHHHHHHHHHCCCEEEEecCccCCCcCCCC
Confidence 4556678888887766664321 125789999999976432211 13344678899999999999999997643110
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcC---CCCCCceEEEEechhHHHHHHHHhh-CCCeeEEEEEcCCcCCcccccchh
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDGYDTFY 456 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~~a~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~ 456 (550)
.. . ....|+.++++++.++. .+|.++|+|+|||+||++++.++.+ .+.+++++++.+|+.++.......
T Consensus 92 ~~---~----~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~~ 164 (276)
T 3hxk_A 92 FL---S----QNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSD 164 (276)
T ss_dssp TH---H----HHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSSS
T ss_pred cC---c----hHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCcc
Confidence 00 0 12688999999998863 3788999999999999999999997 688999999999987643321000
Q ss_pred --hhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC--
Q 008873 457 --TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH-- 532 (550)
Q Consensus 457 --~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~-- 532 (550)
...++ + .+. ...++...+.++++|+|++||++|..+|+.++.++++++++.+.+++++++|+++|.+...
T Consensus 165 ~~~~~~~--~---~~~-~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 238 (276)
T 3hxk_A 165 LSHFNFE--I---ENI-SEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANR 238 (276)
T ss_dssp SSSSCCC--C---SCC-GGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEESCCCTTCTTCST
T ss_pred hhhhhcC--c---hhh-hhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEECCCCCCccccCc
Confidence 01111 1 111 4556667778889999999999999999999999999999999999999999999987432
Q ss_pred ----------CcHHHHHHHHHHHHHHh
Q 008873 533 ----------RDRIYMEERIWEFIERT 549 (550)
Q Consensus 533 ----------~~~~~~~~~~~~fl~~~ 549 (550)
.....+.+.+.+||+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~wl~~~ 265 (276)
T 3hxk_A 239 TTAPSDAYCLPSVHRWVSWASDWLERQ 265 (276)
T ss_dssp TSCSSSTTCCHHHHTHHHHHHHHHHHH
T ss_pred cccccccccCchHHHHHHHHHHHHHhC
Confidence 24577889999999875
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-25 Score=206.25 Aligned_cols=228 Identities=20% Similarity=0.239 Sum_probs=163.3
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh
Q 008873 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 379 (550)
Q Consensus 300 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~ 379 (550)
.++++. +|.++.++++.|... .++.|+||++||.+++.. ...|..+++.|+++||.|+++|+||+|.+...
T Consensus 3 ~~~~~~-~g~~l~~~~~~p~~~---~~~~p~vvl~HG~~~~~~-----~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~ 73 (251)
T 2wtm_A 3 AMYIDC-DGIKLNAYLDMPKNN---PEKCPLCIIIHGFTGHSE-----ERHIVAVQETLNEIGVATLRADMYGHGKSDGK 73 (251)
T ss_dssp EEEEEE-TTEEEEEEEECCTTC---CSSEEEEEEECCTTCCTT-----SHHHHHHHHHHHHTTCEEEEECCTTSTTSSSC
T ss_pred ceEEec-CCcEEEEEEEccCCC---CCCCCEEEEEcCCCcccc-----cccHHHHHHHHHHCCCEEEEecCCCCCCCCCc
Confidence 355654 788999999988752 145799999999766510 11345567888999999999999999987643
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhh
Q 008873 380 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEK 459 (550)
Q Consensus 380 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 459 (550)
........ ..+|+.++++++.++..+ ++++|+||||||.+++.++.++|++++++|+.+|........ ....
T Consensus 74 ~~~~~~~~----~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~--~~~~ 145 (251)
T 2wtm_A 74 FEDHTLFK----WLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIA--RTGE 145 (251)
T ss_dssp GGGCCHHH----HHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHH--HHTE
T ss_pred cccCCHHH----HHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHH--hhhh
Confidence 22111111 267888888888765433 489999999999999999999999999999998875421100 0000
Q ss_pred ccC---CCCCCcc----------------ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 460 YMG---LPSEDPV----------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 460 ~~g---~~~~~~~----------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
..+ .+...++ .....++...+.++++|+|++||++|..+|++.+.++.+.+ .+.+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~----~~~~~~ 221 (251)
T 2wtm_A 146 LLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQY----KNCKLV 221 (251)
T ss_dssp ETTEECBTTBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHS----SSEEEE
T ss_pred hccccCCchhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhC----CCcEEE
Confidence 000 0000000 01122344567788999999999999999999988887765 468999
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++|+++|.+ .++...+.+.+.+||+++|
T Consensus 222 ~~~~~gH~~--~~~~~~~~~~i~~fl~~~~ 249 (251)
T 2wtm_A 222 TIPGDTHCY--DHHLELVTEAVKEFMLEQI 249 (251)
T ss_dssp EETTCCTTC--TTTHHHHHHHHHHHHHHHH
T ss_pred EECCCCccc--chhHHHHHHHHHHHHHHhc
Confidence 999999998 6778889999999998764
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-26 Score=217.33 Aligned_cols=231 Identities=17% Similarity=0.179 Sum_probs=172.6
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.+.+.++. +|..+.++++.|. +.|+||++||+++... .|..+++.|+++||.|+++|+||+|.+.
T Consensus 6 ~~~~~~~~-~g~~l~~~~~~p~-------~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~g~s~ 70 (290)
T 3ksr_A 6 LSSIEIPV-GQDELSGTLLTPT-------GMPGVLFVHGWGGSQH-------HSLVRAREAVGLGCICMTFDLRGHEGYA 70 (290)
T ss_dssp EEEEEEEE-TTEEEEEEEEEEE-------SEEEEEEECCTTCCTT-------TTHHHHHHHHTTTCEEECCCCTTSGGGG
T ss_pred eeeEEecC-CCeEEEEEEecCC-------CCcEEEEeCCCCCCcC-------cHHHHHHHHHHCCCEEEEeecCCCCCCC
Confidence 46677777 7889999999986 4599999999876532 3455678899999999999999999876
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc----c
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----D 453 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~----~ 453 (550)
.......... ..+|+.++++++.+++.+|.++|+|+|||+||++++.++.++| ++++++.+|....... .
T Consensus 71 ~~~~~~~~~~----~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~~~~ 144 (290)
T 3ksr_A 71 SMRQSVTRAQ----NLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWDQPK 144 (290)
T ss_dssp GGTTTCBHHH----HHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTTSBH
T ss_pred CCcccccHHH----HHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhhccc
Confidence 5432211122 2689999999999888888999999999999999999999887 5677777776543211 0
Q ss_pred chhh-hhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC
Q 008873 454 TFYT-EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 532 (550)
Q Consensus 454 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~ 532 (550)
.... ...+.........+...++...+.++++|+|++||+.|..+++.++..+++.+...+ +++++++|+++|.+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~ 223 (290)
T 3ksr_A 145 VSLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIAGADHALSVK 223 (290)
T ss_dssp HHHHHSTTHHHHTTSCCCGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEETTCCTTCCSH
T ss_pred ccccCChhhhhhhhhhhhhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcCCCCCCCCcc
Confidence 0000 000000011112233445566788899999999999999999999999999886655 68999999999998665
Q ss_pred CcHHHHHHHHHHHHHHhC
Q 008873 533 RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 533 ~~~~~~~~~~~~fl~~~l 550 (550)
.....+.+.+.+||++++
T Consensus 224 ~~~~~~~~~i~~fl~~~~ 241 (290)
T 3ksr_A 224 EHQQEYTRALIDWLTEMV 241 (290)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 677888999999998763
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=202.60 Aligned_cols=211 Identities=16% Similarity=0.191 Sum_probs=164.6
Q ss_pred CCe--EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 297 PPD--IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 297 ~~~--~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
..| .+.+++.+| .+.++++.|.+ ++.|+||++||.++....... ..+..+++.|+++||.|+++|+||+|
T Consensus 20 ~~e~~~~~~~~~~g-~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G 91 (249)
T 2i3d_A 20 QGHMPEVIFNGPAG-RLEGRYQPSKE-----KSAPIAIILHPHPQFGGTMNN--QIVYQLFYLFQKRGFTTLRFNFRSIG 91 (249)
T ss_dssp ----CEEEEEETTE-EEEEEEECCSS-----TTCCEEEEECCCGGGTCCTTS--HHHHHHHHHHHHTTCEEEEECCTTST
T ss_pred cCceeEEEEECCCc-eEEEEEEcCCC-----CCCCEEEEECCCcccCCCccc--hHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 456 899999888 89999998864 356999999996433211111 12244678899999999999999998
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 454 (550)
.+...+.. .....+|+.++++++.++.. +.++|+++|||+||.+++.++.++|+ ++++|+.+|..+...
T Consensus 92 ~s~~~~~~------~~~~~~d~~~~i~~l~~~~~-~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--- 160 (249)
T 2i3d_A 92 RSQGEFDH------GAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD--- 160 (249)
T ss_dssp TCCSCCCS------SHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC---
T ss_pred CCCCCCCC------ccchHHHHHHHHHHHHHhCC-CCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh---
Confidence 77543321 11235889999999988753 77899999999999999999999998 899999998755211
Q ss_pred hhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHH-cCCCeEEEEcCCCCCcCCCCC
Q 008873 455 FYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA-ARKPYEILIFPDERHMPRRHR 533 (550)
Q Consensus 455 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~-~~~~~~~~~~p~~~H~~~~~~ 533 (550)
...+.++++|+|+++|+.|..+|++.+.++++++.. .+.+++++++|+++|.+. .
T Consensus 161 ----------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~~~--~ 216 (249)
T 2i3d_A 161 ----------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN--G 216 (249)
T ss_dssp ----------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--T
T ss_pred ----------------------hhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEECCCCcccc--c
Confidence 123456789999999999999999999999999865 455899999999999984 5
Q ss_pred cHHHHHHHHHHHHHHhC
Q 008873 534 DRIYMEERIWEFIERTL 550 (550)
Q Consensus 534 ~~~~~~~~~~~fl~~~l 550 (550)
....+.+.+.+||++++
T Consensus 217 ~~~~~~~~i~~fl~~~l 233 (249)
T 2i3d_A 217 KVDELMGECEDYLDRRL 233 (249)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 77889999999998763
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-25 Score=220.86 Aligned_cols=228 Identities=18% Similarity=0.213 Sum_probs=165.4
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
++.+.+. ++ .+.++++.|.+. ++.|+||++||+++... ...++.|+++||.|+++|+||++++.
T Consensus 151 v~~~~~~--~g-~l~~~l~~P~~~----~~~P~Vv~lhG~~~~~~---------~~~a~~La~~Gy~Vla~D~rG~~~~~ 214 (446)
T 3hlk_A 151 VRREPVR--VG-RVRGTLFLPPEP----GPFPGIVDMFGTGGGLL---------EYRASLLAGKGFAVMALAYYNYEDLP 214 (446)
T ss_dssp CEEEEEE--ET-TEEEEEEECSSS----CCBCEEEEECCSSCSCC---------CHHHHHHHTTTCEEEEECCSSSTTSC
T ss_pred cEEEEec--CC-eEEEEEEeCCCC----CCCCEEEEECCCCcchh---------hHHHHHHHhCCCEEEEeccCCCCCCC
Confidence 3444443 33 589999999753 57899999999865421 22478899999999999999988765
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 457 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 457 (550)
... .....+|+.++++++.++..+|.++|+|+||||||++++.++.++|+ ++++|+.+|..........+.
T Consensus 215 ~~~--------~~~~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~ 285 (446)
T 3hlk_A 215 KTM--------ETLHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYK 285 (446)
T ss_dssp SCC--------SEEEHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEET
T ss_pred cch--------hhCCHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCcccc
Confidence 322 12347899999999999988899999999999999999999999988 889998888653211100000
Q ss_pred hhcc--------------------CCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHH-HHHHHHHHHcCCC
Q 008873 458 EKYM--------------------GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT-ARLINALVAARKP 516 (550)
Q Consensus 458 ~~~~--------------------g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~-~~~~~~l~~~~~~ 516 (550)
...+ ..................+.++++|+|++||++|..+|..+. ..+.++|++.+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~ 365 (446)
T 3hlk_A 286 GETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRR 365 (446)
T ss_dssp TEEECCCCBCGGGCEECSSSCEECTTCBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCC
T ss_pred CccCCccccchhccccccchHHHHHHHHhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCC
Confidence 0000 000000000011112223678899999999999999999554 7899999999988
Q ss_pred -eEEEEcCCCCCcCC---------------------------CCCcHHHHHHHHHHHHHHhC
Q 008873 517 -YEILIFPDERHMPR---------------------------RHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 517 -~~~~~~p~~~H~~~---------------------------~~~~~~~~~~~~~~fl~~~l 550 (550)
+++++||+++|.+. ..+...+.++.+++||+++|
T Consensus 366 ~~~l~~~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L 427 (446)
T 3hlk_A 366 KPQIICYPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHL 427 (446)
T ss_dssp CCEEEEETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999983 12236778999999999986
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=206.01 Aligned_cols=230 Identities=12% Similarity=0.079 Sum_probs=165.4
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCC--CCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 299 DIVQIQANDGTVLYGALYKPDESR--YGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~--~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+.+.+. .+|..+.+.+|.|.... ...++.|+||++|||+....... .+...++.|+++||.|+++|+||+|..
T Consensus 5 ~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~----~~~~~~~~l~~~G~~v~~~d~~g~g~~ 79 (277)
T 3bxp_A 5 EQRTLN-TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGR----EEAPIATRMMAAGMHTVVLNYQLIVGD 79 (277)
T ss_dssp EEEEEC-STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCT----THHHHHHHHHHTTCEEEEEECCCSTTT
T ss_pred EEEEec-cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCc----cchHHHHHHHHCCCEEEEEecccCCCC
Confidence 556663 46778899999987310 11257899999999754322111 334467888899999999999997633
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcC---CCCCCceEEEEechhHHHHHHHHhhC--------------CCeeEE
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARF--------------PDVFQC 439 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~~a~~~~~~~--------------~~~~~~ 439 (550)
+..+. ....|+.++++++.++. .+|+++|+|+|+|+||++++.++.++ +.++++
T Consensus 80 ~~~~~---------~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 150 (277)
T 3bxp_A 80 QSVYP---------WALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAA 150 (277)
T ss_dssp CCCTT---------HHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSE
T ss_pred CccCc---------hHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCE
Confidence 32111 23678889999988762 36788999999999999999999875 678999
Q ss_pred EEEcCCcCCccccc---chhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Q 008873 440 AVSGAPVTSWDGYD---TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 516 (550)
Q Consensus 440 ~v~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 516 (550)
+++.+|+.+..... ..+...+++ .+...++...+.++.+|+|++||++|..+|++++.++++++.+.+.+
T Consensus 151 ~v~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~ 223 (277)
T 3bxp_A 151 IILGYPVIDLTAGFPTTSAARNQITT-------DARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVA 223 (277)
T ss_dssp EEEESCCCBTTSSSSSSHHHHHHHCS-------CGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHHHHTTCC
T ss_pred EEEeCCcccCCCCCCCccccchhccc-------hhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCCe
Confidence 99999987643210 000001211 23345666677778899999999999999999999999999999999
Q ss_pred eEEEEcCCCCCcCCCCC--------------cHHHHHHHHHHHHHHh
Q 008873 517 YEILIFPDERHMPRRHR--------------DRIYMEERIWEFIERT 549 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~--------------~~~~~~~~~~~fl~~~ 549 (550)
++++++++++|.+.... ....+.+.+.+||+++
T Consensus 224 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 270 (277)
T 3bxp_A 224 TAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQ 270 (277)
T ss_dssp EEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhc
Confidence 99999999999764322 2577899999999875
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=232.75 Aligned_cols=245 Identities=16% Similarity=0.232 Sum_probs=177.8
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCce----eecccccccchhHhHHHHhCCcEEEEECCCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQ----LVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 373 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~----~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~ 373 (550)
.+.+.++..||..|.++++.|.+. +++|+||++||..... .....|...+....++|+++||+|+.+|+||+
T Consensus 25 ~~~v~i~~~DG~~L~~~~~~P~~~----~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D~RG~ 100 (615)
T 1mpx_A 25 KREVMIPMRDGVKLHTVIVLPKGA----KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGK 100 (615)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTS
T ss_pred EEEEEEECCCCCEEEEEEEeCCCC----CCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEECCCCC
Confidence 467889999999999999999763 5789999999854431 00001100011111889999999999999999
Q ss_pred CCCchhhHHHH-----hhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 374 ARRGLKFEASI-----KHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 374 g~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
|+++..+.... ...++..+.+|+.++++||.++ ++.| .||+++|+||||+++++++..+++.++|+|+.+|+.
T Consensus 101 g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~~~~~ 179 (615)
T 1mpx_A 101 YGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMI 179 (615)
T ss_dssp TTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCC
T ss_pred CCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEecCCcc
Confidence 99887654321 1122226789999999999998 7776 599999999999999999988899999999999998
Q ss_pred C-cc-c-c------c-c---hh-hhh-------------------------------------------ccCCCCCCccc
Q 008873 448 S-WD-G-Y------D-T---FY-TEK-------------------------------------------YMGLPSEDPVG 470 (550)
Q Consensus 448 ~-~~-~-~------~-~---~~-~~~-------------------------------------------~~g~~~~~~~~ 470 (550)
| +. . + . . ++ ... ++..+ ...+.
T Consensus 180 d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~d~~ 258 (615)
T 1mpx_A 180 DGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHA-AYDAF 258 (615)
T ss_dssp CTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTC-SSCHH
T ss_pred ccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCC-CcChh
Confidence 8 43 1 1 0 0 00 000 00001 11234
Q ss_pred cccCChhhhhhc--CCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC---CeEEEEcCCCCCcCCC------------CC
Q 008873 471 YEYSSVMHHVHK--MKGKLLLVHGMIDENVHFRHTARLINALVAARK---PYEILIFPDERHMPRR------------HR 533 (550)
Q Consensus 471 ~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~---~~~~~~~p~~~H~~~~------------~~ 533 (550)
|...+++.++++ |++|+|++||..|.+ ++.++.+++++|++++. +.++++.|. +|.... .+
T Consensus 259 w~~~Sp~~~~~~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~ 336 (615)
T 1mpx_A 259 WQEQALDKVMARTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGD 336 (615)
T ss_dssp HHTTCHHHHHHTSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSC
T ss_pred hhhcChhhhhhccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccccccCccccCcc
Confidence 567789999999 999999999999998 88999999999998864 388888888 687511 11
Q ss_pred -cHHHHHHHHHHHHHHhC
Q 008873 534 -DRIYMEERIWEFIERTL 550 (550)
Q Consensus 534 -~~~~~~~~~~~fl~~~l 550 (550)
......+.+++||++||
T Consensus 337 ~~~~~~~~~~~~wfd~~L 354 (615)
T 1mpx_A 337 TARQFRHDVLRPFFDQYL 354 (615)
T ss_dssp HHHHHHHHTHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHh
Confidence 11223677899999986
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=204.36 Aligned_cols=211 Identities=17% Similarity=0.158 Sum_probs=162.4
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+.+.+++.+|..+.++++.|.+ ++.|+||++||.++... .+..+++.|+++||.|+++|+||+|.++.
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~-----~~~p~vv~~hG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 71 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK-----APAPVIVIAQDIFGVNA-------FMRETVSWLVDQGYAAVCPDLYARQAPGT 71 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS-----CSEEEEEEECCTTBSCH-------HHHHHHHHHHHTTCEEEEECGGGGTSTTC
T ss_pred ceEEEecCCCCeEEEEEECCCC-----CCCCEEEEEcCCCCCCH-------HHHHHHHHHHhCCcEEEeccccccCCCcc
Confidence 4567888899999999999874 46799999999765532 23446788999999999999999987653
Q ss_pred hhHH-------H----HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 379 KFEA-------S----IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 379 ~~~~-------~----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
.... . ..........+|+.++++++.++..++ ++|+|+|||+||.+++.++..+| ++++++.+|..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~ 148 (236)
T 1zi8_A 72 ALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVG 148 (236)
T ss_dssp BCCTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSS
T ss_pred cccccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcc
Confidence 1100 0 000000122678899999998776545 69999999999999999999988 78888877642
Q ss_pred CcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 008873 448 SWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527 (550)
Q Consensus 448 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H 527 (550)
.. +....+.++++|+|+++|++|..+|++.+.++++++...+ +++++++++++|
T Consensus 149 ~~-------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~H 202 (236)
T 1zi8_A 149 LE-------------------------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHWYEEAGH 202 (236)
T ss_dssp GG-------------------------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEEEETTCCT
T ss_pred cc-------------------------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEEEECCCCc
Confidence 10 1235567788999999999999999999999999987655 899999999999
Q ss_pred cCCCCC-------cHHHHHHHHHHHHHHhC
Q 008873 528 MPRRHR-------DRIYMEERIWEFIERTL 550 (550)
Q Consensus 528 ~~~~~~-------~~~~~~~~~~~fl~~~l 550 (550)
.+.... .....++.+.+||+++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l 232 (236)
T 1zi8_A 203 SFARTGSSGYVASAAALANERTLDFLVPLQ 232 (236)
T ss_dssp TTTCTTSTTCCHHHHHHHHHHHHHHHGGGC
T ss_pred ccccCCCCccCHHHHHHHHHHHHHHHHHhc
Confidence 875432 24578899999999875
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=210.16 Aligned_cols=239 Identities=16% Similarity=0.047 Sum_probs=171.9
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEEcCCCCC--CCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALYKPDESR--YGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN 370 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~--~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~ 370 (550)
....+.+.+.+...+|..+.+.+| |+... ...++.|+||++|||+....... .+..+++.|+++||.|+++|+
T Consensus 14 ~~~~~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~----~~~~~~~~l~~~G~~v~~~d~ 88 (283)
T 3bjr_A 14 NLYFQGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVA----QAESLAMAFAGHGYQAFYLEY 88 (283)
T ss_dssp ---CCSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHH----HHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCCCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCcc----ccHHHHHHHHhCCcEEEEEec
Confidence 344567889999888888888888 65420 02257899999999763221111 234467888999999999999
Q ss_pred CCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC---CCCCCceEEEEechhHHHHHHHHhhCCCe-----------
Q 008873 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFPDV----------- 436 (550)
Q Consensus 371 rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~~a~~~~~~~~~~----------- 436 (550)
||++.++..+. ....|+.++++++.+.. .+|+++|+|+|+||||++++.++.++|++
T Consensus 89 ~g~~~~~~~~~---------~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~ 159 (283)
T 3bjr_A 89 TLLTDQQPLGL---------APVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAM 159 (283)
T ss_dssp CCTTTCSSCBT---------HHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHH
T ss_pred cCCCccccCch---------hHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCC
Confidence 99886521111 12578889999988753 46788999999999999999999999976
Q ss_pred --eEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 437 --FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 437 --~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
++++++.+|..+.... +.... .........+...++...+.++++|+|++||++|..+|+.++.++++++...+
T Consensus 160 ~~~~~~v~~~p~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~~g 235 (283)
T 3bjr_A 160 LKPNNVVLGYPVISPLLG---FPKDD-ATLATWTPTPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAK 235 (283)
T ss_dssp HCCSSEEEESCCCCTTSB---C---------CCCCCGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHHTT
T ss_pred CCccEEEEcCCccccccc---ccccc-chHHHHHHHhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHHCC
Confidence 8899999988764321 00000 00000111233455666677888999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCcCCCCC------------cHHHHHHHHHHHHHHh
Q 008873 515 KPYEILIFPDERHMPRRHR------------DRIYMEERIWEFIERT 549 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~~~~~------------~~~~~~~~~~~fl~~~ 549 (550)
.+++++++++++|.+.... ....+.+.+++||+++
T Consensus 236 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 236 IPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp CCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 9999999999999763221 2367889999999875
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=216.39 Aligned_cols=224 Identities=14% Similarity=0.093 Sum_probs=171.1
Q ss_pred CCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecc-cc----cccchhHhHHHHhCCcEEEEECC
Q 008873 297 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCD-SW----INTVDMRAQYLRSKGILVWKLDN 370 (550)
Q Consensus 297 ~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~-~~----~~~~~~~~~~l~~~G~~vv~~d~ 370 (550)
..+.+.+.+. +|..+.++++.|.+.. ..+++|+||++||+++...... .+ +...-....+....|+.|+++|+
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~-~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~ 221 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVN-PDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQC 221 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCC-TTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECC
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCC-CCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecC
Confidence 4577889998 9999999999998742 2368899999999875421000 00 00000012344577899999999
Q ss_pred CCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 371 rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
||.++++..|........+.....|+.++++++.++..+|++||+|+||||||++++.++.++|++|+++++.+|..+
T Consensus 222 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~-- 299 (380)
T 3doh_A 222 PPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGD-- 299 (380)
T ss_dssp CTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCC--
T ss_pred CCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCC--
Confidence 998887766553222223344678899999999988778999999999999999999999999999999999998741
Q ss_pred cccchhhhhccCCCCCCccccccCChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCC---C
Q 008873 451 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE---R 526 (550)
Q Consensus 451 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~---~ 526 (550)
...+.+++ +|+|++||+.|..+|++++.+++++|++.+.++++++||++ +
T Consensus 300 --------------------------~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~h~~ 353 (380)
T 3doh_A 300 --------------------------VSKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEK 353 (380)
T ss_dssp --------------------------GGGGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEECTTHHHH
T ss_pred --------------------------hhhhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCceEEEEecCCcccC
Confidence 12334444 89999999999999999999999999999999999999999 5
Q ss_pred CcCCCCCcHHHHHH--HHHHHHHHh
Q 008873 527 HMPRRHRDRIYMEE--RIWEFIERT 549 (550)
Q Consensus 527 H~~~~~~~~~~~~~--~~~~fl~~~ 549 (550)
|++.........+. .+++||.++
T Consensus 354 h~~~~H~~~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 354 HGWDPHGSWIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp TTCCTTCTHHHHHTCHHHHHHHHTC
T ss_pred CCCCCchhHHHhcCCHHHHHHHHhh
Confidence 55544444555566 899999875
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=210.75 Aligned_cols=236 Identities=15% Similarity=0.128 Sum_probs=165.3
Q ss_pred CCCeEEEEEcCCCcEEEEEEEc-CCCC-------------------CCCCCCceEEEEEcCCCCceeecccccccchhHh
Q 008873 296 EPPDIVQIQANDGTVLYGALYK-PDES-------------------RYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA 355 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~-P~~~-------------------~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~ 355 (550)
...+.+.+...+| +.+.+|. |... ....+++|+||++|||+........ ..+..++
T Consensus 62 v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~--~~~~~~~ 137 (365)
T 3ebl_A 62 VSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASS--TIYDSLC 137 (365)
T ss_dssp EEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTB--HHHHHHH
T ss_pred CceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCch--hhHHHHH
Confidence 3457888888888 7777887 8642 0123578999999998754321111 1234456
Q ss_pred HHHHhC-CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC----CCCCC-ceEEEEechhHHHHHHH
Q 008873 356 QYLRSK-GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG----LAKVG-HIGLYGWSYGGYLSAIT 429 (550)
Q Consensus 356 ~~l~~~-G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~i~G~S~GG~~a~~~ 429 (550)
+.|+++ ||+|+++|||+.++... ...++|+.++++|+.++. .+|++ ||+|+|+|+||++++.+
T Consensus 138 ~~la~~~g~~Vv~~dyR~~p~~~~-----------~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~ 206 (365)
T 3ebl_A 138 RRFVKLSKGVVVSVNYRRAPEHRY-----------PCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHV 206 (365)
T ss_dssp HHHHHHHTSEEEEECCCCTTTSCT-----------THHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHH
T ss_pred HHHHHHCCCEEEEeeCCCCCCCCC-----------cHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHH
Confidence 777765 99999999998764431 122789999999999765 58999 99999999999999999
Q ss_pred HhhCCC---eeEEEEEcCCcCCcccccch-----------------hhhhccCCCCCCccccccCChhh-hhhcCC----
Q 008873 430 LARFPD---VFQCAVSGAPVTSWDGYDTF-----------------YTEKYMGLPSEDPVGYEYSSVMH-HVHKMK---- 484 (550)
Q Consensus 430 ~~~~~~---~~~~~v~~~~~~~~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~~~-~~~~i~---- 484 (550)
+.+.++ .++++|+.+|+.+....... +...+++... .......+|+. ....++
T Consensus 207 a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~l~~~~~ 284 (365)
T 3ebl_A 207 AVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDA--DRDHPACNPFGPNGRRLGGLPF 284 (365)
T ss_dssp HHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTC--CTTSTTTCTTSTTCCCCTTSCC
T ss_pred HHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCC--CCCCcccCCCCCcchhhccCCC
Confidence 987554 78999999999876432111 1111111111 11111122322 233444
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC---CCCcHHHHHHHHHHHHHHhC
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR---RHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~---~~~~~~~~~~~~~~fl~~~l 550 (550)
.|+||+||+.|..+ .++.+++++|++.|+++++++||+++|++. ..+...++++.+.+||++++
T Consensus 285 pP~Li~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~ 351 (365)
T 3ebl_A 285 AKSLIIVSGLDLTC--DRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANL 351 (365)
T ss_dssp CCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEcCcccch--hHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 58999999999654 466899999999999999999999999974 34667889999999999875
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=207.04 Aligned_cols=206 Identities=17% Similarity=0.186 Sum_probs=148.1
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
..+.||++||.+++.. .|..+++.|+++||.|+++|+||+|.+..+.......++ .+|+.+++++|.+.
T Consensus 50 ~~~~VlllHG~~~s~~-------~~~~la~~La~~Gy~Via~Dl~GhG~S~~~~~~~~~~~~----~~d~~~~~~~l~~~ 118 (281)
T 4fbl_A 50 SRIGVLVSHGFTGSPQ-------SMRFLAEGFARAGYTVATPRLTGHGTTPAEMAASTASDW----TADIVAAMRWLEER 118 (281)
T ss_dssp SSEEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEECCCTTSSSCHHHHHTCCHHHH----HHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEECCCCCCCCCccccCCCHHHH----HHHHHHHHHHHHhC
Confidence 3466888999655432 345678999999999999999999988654332222233 67888889888765
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch---hh----hhccCCCCC-----CccccccC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF---YT----EKYMGLPSE-----DPVGYEYS 474 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~----~~~~g~~~~-----~~~~~~~~ 474 (550)
. ++++|+||||||.+++.++.++|++++++|+.+|.......... +. ....+.... ..+.....
T Consensus 119 ~----~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (281)
T 4fbl_A 119 C----DVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPV 194 (281)
T ss_dssp C----SEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSE
T ss_pred C----CeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhcc
Confidence 3 68999999999999999999999999999999987654321100 00 000000000 00000000
Q ss_pred C--------------hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHH
Q 008873 475 S--------------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEE 540 (550)
Q Consensus 475 ~--------------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~ 540 (550)
. ....+.++++|+|++||++|..+|++.+..+++++. +.+++++++|+++|.+......+.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~--~~~~~l~~~~~~gH~~~~e~~~e~v~~ 272 (281)
T 4fbl_A 195 TPVPAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIG--STEKELLWLENSYHVATLDNDKELILE 272 (281)
T ss_dssp EEGGGHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSCTHHHHHHHHHCC--CSSEEEEEESSCCSCGGGSTTHHHHHH
T ss_pred CchHHHHHHHHhhhhccccccccCCCEEEEEeCCCCCcCHHHHHHHHHhCC--CCCcEEEEECCCCCcCccccCHHHHHH
Confidence 0 112467889999999999999999999999988763 457899999999998755556788999
Q ss_pred HHHHHHHHh
Q 008873 541 RIWEFIERT 549 (550)
Q Consensus 541 ~~~~fl~~~ 549 (550)
.+++||++|
T Consensus 273 ~i~~FL~~H 281 (281)
T 4fbl_A 273 RSLAFIRKH 281 (281)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999999986
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=230.56 Aligned_cols=245 Identities=16% Similarity=0.193 Sum_probs=179.1
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccc-cc---hhHh-HHHHhCCcEEEEECCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN-TV---DMRA-QYLRSKGILVWKLDNRG 372 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~-~~---~~~~-~~l~~~G~~vv~~d~rG 372 (550)
.+.+.|++.||..|.++++.|.+. +++|+||++||..........+.. .+ .... ++|+++||+|+.+|+||
T Consensus 37 ~~~v~i~~~DG~~L~~~l~~P~~~----~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D~RG 112 (652)
T 2b9v_A 37 KREVMVPMRDGVKLYTVIVIPKNA----RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRG 112 (652)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTT
T ss_pred EEEEEEECCCCcEEEEEEEecCCC----CCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEecCc
Confidence 377899999999999999999763 578999999974332100001100 00 0113 88999999999999999
Q ss_pred CCCCchhhHHHH--hhccC---CCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 373 TARRGLKFEASI--KHNCG---RIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 373 ~g~~~~~~~~~~--~~~~~---~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
+|+++..+.... ..+++ ..+.+|+.++++||.++ +++| .||+|+|+||||++++.+++++++.++|+|+.+|+
T Consensus 113 ~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~~~~ 191 (652)
T 2b9v_A 113 KYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPM 191 (652)
T ss_dssp STTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEEC
T ss_pred CCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEecccc
Confidence 999987764331 11122 36789999999999999 8877 59999999999999999999889999999999999
Q ss_pred CCccc---c--c--------chhhh-h-------------------------------------------ccCCCCCCcc
Q 008873 447 TSWDG---Y--D--------TFYTE-K-------------------------------------------YMGLPSEDPV 469 (550)
Q Consensus 447 ~~~~~---~--~--------~~~~~-~-------------------------------------------~~g~~~~~~~ 469 (550)
.|+.. + . .++.. . ++..|. ..+
T Consensus 192 ~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~d~ 270 (652)
T 2b9v_A 192 VDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPA-YDA 270 (652)
T ss_dssp CCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCS-SSH
T ss_pred cccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCC-CCh
Confidence 88532 0 0 00000 0 000111 113
Q ss_pred ccccCChhhhhhc--CCCcEEEEecCCCCCCChHHHHHHHHHHHHcC--CCeEEEEcCCCCCcCCC-------------C
Q 008873 470 GYEYSSVMHHVHK--MKGKLLLVHGMIDENVHFRHTARLINALVAAR--KPYEILIFPDERHMPRR-------------H 532 (550)
Q Consensus 470 ~~~~~~~~~~~~~--i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~--~~~~~~~~p~~~H~~~~-------------~ 532 (550)
.|...++..++++ |++|+|++||..|.+ +..++.+++++|++++ ++.++++.|. +|+... .
T Consensus 271 yw~~~Sp~~~~~~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~ 348 (652)
T 2b9v_A 271 FWQGQALDKILAQRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGD 348 (652)
T ss_dssp HHHTTCHHHHHHHHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSC
T ss_pred HHhcCChhhhhhcCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccCCccccccc
Confidence 3456788889999 999999999999997 7788999999999998 8889999887 697511 1
Q ss_pred CcHHHHHHHHHHHHHHhC
Q 008873 533 RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 533 ~~~~~~~~~~~~fl~~~l 550 (550)
.......+.+++||++||
T Consensus 349 ~~~~~~~~~~~~wfd~~L 366 (652)
T 2b9v_A 349 TAHQYRRDVFRPFFDEYL 366 (652)
T ss_dssp HHHHHHHHTHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHh
Confidence 112334678899999886
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=197.42 Aligned_cols=208 Identities=18% Similarity=0.180 Sum_probs=162.1
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+.++. +|.++.++++.|.+ +.|+||++||+++... .| .+..+.+.|+++||.|+++|+||.|.+
T Consensus 11 ~~~~~~~~~-~g~~l~~~~~~p~~------~~p~vv~~hG~~~~~~---~~--~~~~~~~~l~~~G~~v~~~d~~g~g~s 78 (223)
T 2o2g_A 11 QEYAVSVSV-GEVKLKGNLVIPNG------ATGIVLFAHGSGSSRY---SP--RNRYVAEVLQQAGLATLLIDLLTQEEE 78 (223)
T ss_dssp CEEEEEEEE-TTEEEEEEEECCTT------CCEEEEEECCTTCCTT---CH--HHHHHHHHHHHHTCEEEEECSSCHHHH
T ss_pred eeeEEEEec-CCeEEEEEEecCCC------CceEEEEecCCCCCCC---cc--chHHHHHHHHHCCCEEEEEcCCCcCCC
Confidence 457788887 88999999999864 4599999999765432 11 123457788899999999999998755
Q ss_pred chhhHH----HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 377 GLKFEA----SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 377 ~~~~~~----~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
...... ..... ..+|+.++++++..++.+|.++++++|||+||.+++.++.++|++++++++.+|..++.
T Consensus 79 ~~~~~~~~~~~~~~~----~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~-- 152 (223)
T 2o2g_A 79 EIDLRTRHLRFDIGL----LASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA-- 152 (223)
T ss_dssp HHHHHHCSSTTCHHH----HHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGC--
T ss_pred CccchhhcccCcHHH----HHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcC--
Confidence 432211 11111 25788999999998888899999999999999999999999999999999998864321
Q ss_pred cchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC
Q 008873 453 DTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 532 (550)
Q Consensus 453 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~ 532 (550)
...+.++++|+|+++|++|..+|... .+.+.+.+.++++.++++++|.+...
T Consensus 153 ------------------------~~~~~~~~~P~l~i~g~~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~H~~~~~ 204 (223)
T 2o2g_A 153 ------------------------PSALPHVKAPTLLIVGGYDLPVIAMN----EDALEQLQTSKRLVIIPRASHLFEEP 204 (223)
T ss_dssp ------------------------TTTGGGCCSCEEEEEETTCHHHHHHH----HHHHHHCCSSEEEEEETTCCTTCCST
T ss_pred ------------------------HHHHhcCCCCEEEEEccccCCCCHHH----HHHHHhhCCCeEEEEeCCCCcccCCh
Confidence 12456778999999999999886332 34455557889999999999998666
Q ss_pred CcHHHHHHHHHHHHHHhC
Q 008873 533 RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 533 ~~~~~~~~~~~~fl~~~l 550 (550)
+....+.+.+.+||+++|
T Consensus 205 ~~~~~~~~~i~~fl~~~l 222 (223)
T 2o2g_A 205 GALTAVAQLASEWFMHYL 222 (223)
T ss_dssp THHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 777889999999999886
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=215.33 Aligned_cols=237 Identities=15% Similarity=0.128 Sum_probs=170.6
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
....+.+++++.+|..|.++++.|.+. .++.|+||++||+++... . ......++++||+|+++|+||+|
T Consensus 65 ~~~~~~~~~~~~dg~~i~~~~~~P~~~---~~~~p~vv~~HG~g~~~~---~-----~~~~~~l~~~G~~v~~~d~rG~g 133 (337)
T 1vlq_A 65 TVEAYDVTFSGYRGQRIKGWLLVPKLE---EEKLPCVVQYIGYNGGRG---F-----PHDWLFWPSMGYICFVMDTRGQG 133 (337)
T ss_dssp SEEEEEEEEECGGGCEEEEEEEEECCS---CSSEEEEEECCCTTCCCC---C-----GGGGCHHHHTTCEEEEECCTTCC
T ss_pred CeEEEEEEEEcCCCCEEEEEEEecCCC---CCCccEEEEEcCCCCCCC---C-----chhhcchhhCCCEEEEecCCCCC
Confidence 345788999998999999999999763 257899999999876532 1 11345778899999999999999
Q ss_pred CCchhhHHHH--------------hhccCC-------CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC
Q 008873 375 RRGLKFEASI--------------KHNCGR-------IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 433 (550)
Q Consensus 375 ~~~~~~~~~~--------------~~~~~~-------~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~ 433 (550)
.++....... ...+.. ..++|+.++++++.+++.+|.++|+|+|+|+||++++.++..+
T Consensus 134 ~s~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~ 213 (337)
T 1vlq_A 134 SGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALS 213 (337)
T ss_dssp CSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHC
T ss_pred CcccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcC
Confidence 6543100000 000000 2378999999999999888999999999999999999999998
Q ss_pred CCeeEEEEEcCCcCC-ccccc-----chhh--hhcc-CCCCCCcc---ccccCChhhhhhcCCCcEEEEecCCCCCCChH
Q 008873 434 PDVFQCAVSGAPVTS-WDGYD-----TFYT--EKYM-GLPSEDPV---GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR 501 (550)
Q Consensus 434 ~~~~~~~v~~~~~~~-~~~~~-----~~~~--~~~~-g~~~~~~~---~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~ 501 (550)
|+ ++++++.+|..+ +.... ..+. ..++ ..+..... .+...++...+.++++|+|+++|+.|..+|+.
T Consensus 214 p~-v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~p~~ 292 (337)
T 1vlq_A 214 KK-AKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPS 292 (337)
T ss_dssp SS-CCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHH
T ss_pred CC-ccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCCEEEEeeCCCCCCCch
Confidence 85 788888888543 21110 0000 0111 11211111 12345677788899999999999999999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 502 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++.++++++. .++++.++|+++|.+.. ....+.+++||.++|
T Consensus 293 ~~~~~~~~l~---~~~~~~~~~~~gH~~~~----~~~~~~~~~fl~~~l 334 (337)
T 1vlq_A 293 TVFAAYNYYA---GPKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLF 334 (337)
T ss_dssp HHHHHHHHCC---SSEEEEEETTCCTTTTH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcC---CCcEEEEcCCCCCCCcc----hhhHHHHHHHHHHHH
Confidence 9999988773 36899999999999632 345688889988764
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=208.52 Aligned_cols=229 Identities=15% Similarity=0.160 Sum_probs=165.2
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~ 375 (550)
..+.+++++.+| .|.+++|.|.+. +.|+||++|||+....... .+......|++ .||.|+++|||++++
T Consensus 62 ~~~~~~~~~~~g-~i~~~~~~p~~~-----~~p~vv~~HGgg~~~g~~~----~~~~~~~~la~~~g~~V~~~dyr~~p~ 131 (326)
T 3ga7_A 62 TTRTCAVPTPYG-DVTTRLYSPQPT-----SQATLYYLHGGGFILGNLD----THDRIMRLLARYTGCTVIGIDYSLSPQ 131 (326)
T ss_dssp EEEEEEECCTTS-CEEEEEEESSSS-----CSCEEEEECCSTTTSCCTT----TTHHHHHHHHHHHCSEEEEECCCCTTT
T ss_pred ceEEEEeecCCC-CeEEEEEeCCCC-----CCcEEEEECCCCcccCChh----hhHHHHHHHHHHcCCEEEEeeCCCCCC
Confidence 347889998888 799999999763 2399999999874322112 23445677777 899999999998765
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcC---CCCCCceEEEEechhHHHHHHHHhhCCC------eeEEEEEcCCc
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFPD------VFQCAVSGAPV 446 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~~a~~~~~~~~~------~~~~~v~~~~~ 446 (550)
... . ..++|+.++++|+.++. .+|++||+|+|+|+||++++.++.+.++ .++++++.+|+
T Consensus 132 ~~~--~---------~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~ 200 (326)
T 3ga7_A 132 ARY--P---------QAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGL 200 (326)
T ss_dssp SCT--T---------HHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCC
T ss_pred CCC--C---------cHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccc
Confidence 431 1 12689999999999863 5799999999999999999999987665 38999999998
Q ss_pred CCcccccc-----------------hhhhhccCCCCCCccccccCChh-hhhhcCCCcEEEEecCCCCCCChHHHHHHHH
Q 008873 447 TSWDGYDT-----------------FYTEKYMGLPSEDPVGYEYSSVM-HHVHKMKGKLLLVHGMIDENVHFRHTARLIN 508 (550)
Q Consensus 447 ~~~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~~~-~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 508 (550)
.+...... .+...+++........ ..++. ..+.+..+|+||+||+.|..+ .++.++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~~~ 276 (326)
T 3ga7_A 201 YGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESP--WYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLLHQ 276 (326)
T ss_dssp CSCSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCT--TTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHHHH
T ss_pred cccCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCCccCCc--ccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHHHH
Confidence 76532111 0111121111100000 01111 123334569999999999987 48899999
Q ss_pred HHHHcCCCeEEEEcCCCCCcCCCC----CcHHHHHHHHHHHHHHhC
Q 008873 509 ALVAARKPYEILIFPDERHMPRRH----RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 509 ~l~~~~~~~~~~~~p~~~H~~~~~----~~~~~~~~~~~~fl~~~l 550 (550)
+|++.|+++++++||+++|++... ....+.++.+.+||+++|
T Consensus 277 ~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l 322 (326)
T 3ga7_A 277 TLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARM 322 (326)
T ss_dssp HHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998432 345788999999999874
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=208.77 Aligned_cols=217 Identities=18% Similarity=0.139 Sum_probs=156.5
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCchhhHHHHhhc
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHN 387 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~~~ 387 (550)
..+.+++|.|.+. ++.|+||++|||+....... .+..+...|+. .||.|+++|||++++...
T Consensus 65 ~~i~~~~~~p~~~----~~~p~vv~~HGGg~~~g~~~----~~~~~~~~la~~~g~~vv~~dyr~~p~~~~--------- 127 (322)
T 3fak_A 65 AGCAAEWVRAPGC----QAGKAILYLHGGGYVMGSIN----THRSMVGEISRASQAAALLLDYRLAPEHPF--------- 127 (322)
T ss_dssp TTEEEEEEECTTC----CTTCEEEEECCSTTTSCCHH----HHHHHHHHHHHHHTSEEEEECCCCTTTSCT---------
T ss_pred CCeEEEEEeCCCC----CCccEEEEEcCCccccCChH----HHHHHHHHHHHhcCCEEEEEeCCCCCCCCC---------
Confidence 3488999999763 56799999999875332111 12234555554 699999999998765431
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCcCCcccccchhhh-----
Q 008873 388 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVTSWDGYDTFYTE----- 458 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~----- 458 (550)
...++|+.++++|+.++ .+|++||+|+|+|+||++++.++.+.++ .++++++.+|+.++......+..
T Consensus 128 --~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~ 204 (322)
T 3fak_A 128 --PAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEAD 204 (322)
T ss_dssp --THHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHHTTTTC
T ss_pred --CcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHHhCccC
Confidence 11268999999999988 6799999999999999999999987554 48999999999887543222111
Q ss_pred -------------hccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCC
Q 008873 459 -------------KYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 525 (550)
Q Consensus 459 -------------~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~ 525 (550)
.+++... ......+|+...-+...|+||+||+.|.. ..++.+++++|++.|+++++++||++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~---~~~~~~sp~~~~~~~~pP~li~~g~~D~~--~~~~~~~~~~l~~~g~~~~~~~~~g~ 279 (322)
T 3fak_A 205 PMVAPGGINKMAARYLNGAD---AKHPYASPNFANLKGLPPLLIHVGRDEVL--LDDSIKLDAKAKADGVKSTLEIWDDM 279 (322)
T ss_dssp CSCCSSHHHHHHHHHHTTSC---TTCTTTCGGGSCCTTCCCEEEEEETTSTT--HHHHHHHHHHHHHTTCCEEEEEETTC
T ss_pred cccCHHHHHHHHHHhcCCCC---CCCcccCCCcccccCCChHhEEEcCcCcc--HHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 1221110 01112334322112225999999999987 46889999999999999999999999
Q ss_pred CCcCCC----CCcHHHHHHHHHHHHHHhC
Q 008873 526 RHMPRR----HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 526 ~H~~~~----~~~~~~~~~~~~~fl~~~l 550 (550)
+|++.. .......++.+.+||+++|
T Consensus 280 ~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (322)
T 3fak_A 280 IHVWHAFHPMLPEGKQAIVRVGEFMREQW 308 (322)
T ss_dssp CTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred eeehhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 998742 3446788999999999874
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-24 Score=209.52 Aligned_cols=231 Identities=19% Similarity=0.206 Sum_probs=168.0
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+.+.+.+|..|.++++.|.+. ++.|+||++||+++... .| .. ...++++||.|+++|+||+|.+
T Consensus 81 ~~~~~~~~~~~g~~l~~~~~~P~~~----~~~p~vv~~HG~g~~~~---~~----~~-~~~~~~~G~~v~~~D~rG~g~s 148 (346)
T 3fcy_A 81 ECYDLYFTGVRGARIHAKYIKPKTE----GKHPALIRFHGYSSNSG---DW----ND-KLNYVAAGFTVVAMDVRGQGGQ 148 (346)
T ss_dssp EEEEEEEECGGGCEEEEEEEEESCS----SCEEEEEEECCTTCCSC---CS----GG-GHHHHTTTCEEEEECCTTSSSS
T ss_pred EEEEEEEEcCCCCEEEEEEEecCCC----CCcCEEEEECCCCCCCC---Ch----hh-hhHHHhCCcEEEEEcCCCCCCC
Confidence 4578899999999999999999762 57899999999876643 22 22 2356789999999999999977
Q ss_pred chhhHHHHhh------ccCC----------CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 377 GLKFEASIKH------NCGR----------IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 377 ~~~~~~~~~~------~~~~----------~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
.......... ..+. ..+.|+.++++++..+..+|.++|+|+|+|+||.+++.++..+|+ ++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~ 227 (346)
T 3fcy_A 149 SQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKV 227 (346)
T ss_dssp CCCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEE
T ss_pred CCCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEE
Confidence 6432110000 0000 115899999999998888899999999999999999999999998 8999
Q ss_pred EEcCCcCCc-ccc------cchhh--hhccC--CC--CCC---ccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHH
Q 008873 441 VSGAPVTSW-DGY------DTFYT--EKYMG--LP--SED---PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 504 (550)
Q Consensus 441 v~~~~~~~~-~~~------~~~~~--~~~~g--~~--~~~---~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 504 (550)
++.+|.... ... ...+. ..++. .+ ... ...+...++...+.++++|+|+++|+.|..+|+..+.
T Consensus 228 vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G~~D~~~~~~~~~ 307 (346)
T 3fcy_A 228 VSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVF 307 (346)
T ss_dssp EEESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEETTCSSSCHHHHH
T ss_pred EECCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEeeCCCCcCCHHHHH
Confidence 999886531 110 00000 01110 11 110 1122334566778899999999999999999999888
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 505 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++++++. .+++++++|+++|.+. ..+.+.+.+||++
T Consensus 308 ~~~~~~~---~~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~ 343 (346)
T 3fcy_A 308 AAYNNIQ---SKKDIKVYPDYGHEPM-----RGFGDLAMQFMLE 343 (346)
T ss_dssp HHHTTCC---SSEEEEEETTCCSSCC-----TTHHHHHHHHHHT
T ss_pred HHHHhcC---CCcEEEEeCCCCCcCH-----HHHHHHHHHHHHH
Confidence 8887662 3789999999999985 4557889999976
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=187.32 Aligned_cols=204 Identities=21% Similarity=0.256 Sum_probs=155.0
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
...+.+.+++.+| .+.++++.|.+. ++.|+||++||++........ ..+..+++.|+++||.|+++|+||+|.
T Consensus 4 ~~~~~~~~~~~~g-~l~~~~~~p~~~----~~~~~vv~~HG~~~~~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~ 76 (208)
T 3trd_A 4 MTNEDFLIQGPVG-QLEVMITRPKGI----EKSVTGIICHPHPLHGGTMNN--KVVTTLAKALDELGLKTVRFNFRGVGK 76 (208)
T ss_dssp CSSSCEEEECSSS-EEEEEEECCSSC----CCSEEEEEECSCGGGTCCTTC--HHHHHHHHHHHHTTCEEEEECCTTSTT
T ss_pred cccceEEEECCCc-eEEEEEEcCCCC----CCCCEEEEEcCCCCCCCccCC--chHHHHHHHHHHCCCEEEEEecCCCCC
Confidence 3568899999999 999999998753 467999999995422111111 123446788899999999999999987
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 455 (550)
+...+. ......+|+.++++++.++ .+.++|+++|||+||.+++.++ .+| +++++++.+|..+..
T Consensus 77 s~~~~~------~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~----- 141 (208)
T 3trd_A 77 SQGRYD------NGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYE----- 141 (208)
T ss_dssp CCSCCC------TTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSG-----
T ss_pred CCCCcc------chHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccC-----
Confidence 765421 1223478999999999887 2458999999999999999999 667 789999988765210
Q ss_pred hhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH
Q 008873 456 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 535 (550)
Q Consensus 456 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~ 535 (550)
.......+++|+|+++|++|..+|++.+.++++++ ..++++.++++++|.+.. ..
T Consensus 142 --------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~H~~~~--~~ 196 (208)
T 3trd_A 142 --------------------GFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQI---SSPVEFVVMSGASHFFHG--RL 196 (208)
T ss_dssp --------------------GGTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHS---SSCCEEEEETTCCSSCTT--CH
T ss_pred --------------------CchhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHc---cCceEEEEeCCCCCcccc--cH
Confidence 11233445789999999999999999988888766 334899999999999854 24
Q ss_pred HHHHHHHHHHH
Q 008873 536 IYMEERIWEFI 546 (550)
Q Consensus 536 ~~~~~~~~~fl 546 (550)
.++.+.+.+||
T Consensus 197 ~~~~~~i~~fl 207 (208)
T 3trd_A 197 IELRELLVRNL 207 (208)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 67777888886
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=203.64 Aligned_cols=233 Identities=16% Similarity=0.085 Sum_probs=166.5
Q ss_pred CCeEEEEEcCCCc-EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCC
Q 008873 297 PPDIVQIQANDGT-VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTA 374 (550)
Q Consensus 297 ~~~~~~~~~~~g~-~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g 374 (550)
..+.+++.+.+|. .+.+++|.|... .++.|+||++|||+....... .+......|++ .||.|+++|+||+|
T Consensus 50 ~~~~~~i~~~~g~~~l~~~~~~P~~~---~~~~p~vv~~HGgg~~~g~~~----~~~~~~~~la~~~G~~Vv~~d~rg~~ 122 (323)
T 1lzl_A 50 SLRELSAPGLDGDPEVKIRFVTPDNT---AGPVPVLLWIHGGGFAIGTAE----SSDPFCVEVARELGFAVANVEYRLAP 122 (323)
T ss_dssp EEEEEEECCSTTCCCEEEEEEEESSC---CSCEEEEEEECCSTTTSCCGG----GGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred eEEEEEecCCCCCceeEEEEEecCCC---CCCCcEEEEECCCccccCChh----hhHHHHHHHHHhcCcEEEEecCCCCC
Confidence 4577888888886 799999999753 257899999999873321111 23334666766 59999999999998
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCcC
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVT 447 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~~ 447 (550)
.+... ...+|+.++++|+.+. ..+|+++|+|+|+|+||++++.++.++++ .++++++.+|+.
T Consensus 123 ~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~ 191 (323)
T 1lzl_A 123 ETTFP-----------GPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL 191 (323)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred CCCCC-----------chHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCcc
Confidence 65421 1267889999999874 34688899999999999999999887654 489999999988
Q ss_pred Ccccccc-----------------hhhhhccCCCCCC---ccccccCChhhhhhcCC--CcEEEEecCCCCCCChHHHHH
Q 008873 448 SWDGYDT-----------------FYTEKYMGLPSED---PVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTAR 505 (550)
Q Consensus 448 ~~~~~~~-----------------~~~~~~~g~~~~~---~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~ 505 (550)
+...... .+...+++.+... .......+++.. ..++ +|+||+||+.|..+ .++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~~~--~~~~~ 268 (323)
T 1lzl_A 192 DDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDPLR--DEGIE 268 (323)
T ss_dssp CTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCTTH--HHHHH
T ss_pred CCCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccC-cccCCCChhheEECCcCCch--HHHHH
Confidence 7543211 1111222322110 111122333322 2233 69999999999986 57889
Q ss_pred HHHHHHHcCCCeEEEEcCCCCCcCCCC---CcHHHHHHHHHHHHHHhC
Q 008873 506 LINALVAARKPYEILIFPDERHMPRRH---RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 506 ~~~~l~~~~~~~~~~~~p~~~H~~~~~---~~~~~~~~~~~~fl~~~l 550 (550)
++++|++.+.++++++||+++|.+... +....+.+.+.+||+++|
T Consensus 269 ~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l 316 (323)
T 1lzl_A 269 YALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGL 316 (323)
T ss_dssp HHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987432 235688999999999875
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=207.73 Aligned_cols=200 Identities=15% Similarity=0.126 Sum_probs=151.3
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhc
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 387 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~ 387 (550)
+..+...+|.|... .++.|+||++|||+........ +..+++.|+++||.|+++|+||++..... .
T Consensus 65 ~~~~~~~~~~p~~~---~~~~p~vv~~HGgg~~~~~~~~----~~~~~~~l~~~G~~v~~~d~r~~~~~~~~--~----- 130 (303)
T 4e15_A 65 EGRQLVDVFYSEKT---TNQAPLFVFVHGGYWQEMDMSM----SCSIVGPLVRRGYRVAVMDYNLCPQVTLE--Q----- 130 (303)
T ss_dssp STTCEEEEEECTTC---CTTCCEEEEECCSTTTSCCGGG----SCTTHHHHHHTTCEEEEECCCCTTTSCHH--H-----
T ss_pred CCCcEEEEEecCCC---CCCCCEEEEECCCcCcCCChhH----HHHHHHHHHhCCCEEEEecCCCCCCCChh--H-----
Confidence 44466778888643 2578999999997643321222 33457889999999999999998765421 1
Q ss_pred cCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCC-------CeeEEEEEcCCcCCcccccc---hh
Q 008873 388 CGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFP-------DVFQCAVSGAPVTSWDGYDT---FY 456 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~---~~ 456 (550)
...|+.++++++.+. ..++.++|+|+|||+||++++.++.+.. ++++++|+.+|+.++..... .+
T Consensus 131 ----~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~~~~~~ 206 (303)
T 4e15_A 131 ----LMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESVN 206 (303)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHTCTTTS
T ss_pred ----HHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhcccccc
Confidence 168899999999873 2346789999999999999999998653 27999999999988754332 22
Q ss_pred hhhccCCCCCCccccccCChh-hhhhcC----CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 457 TEKYMGLPSEDPVGYEYSSVM-HHVHKM----KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 457 ~~~~~g~~~~~~~~~~~~~~~-~~~~~i----~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
....++. ..+.+...+|+ ..+.++ ++|+||+||++|..+++.++.+++++|++.|.+++++++|+++|.
T Consensus 207 ~~~~~~~---~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~g~~H~ 280 (303)
T 4e15_A 207 PKNILGL---NERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHF 280 (303)
T ss_dssp GGGTTCC---CTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETT
T ss_pred hhhhhcC---CHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCceEEEEeCCCCch
Confidence 2333332 23445556666 455555 899999999999999999999999999999999999999999995
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=197.44 Aligned_cols=231 Identities=18% Similarity=0.159 Sum_probs=165.8
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+.++ .+|..+.++++.|.+ ++.|+||++||.++... ...+..+++.|+++||.|+++|+||+|.+
T Consensus 21 ~~~~~~~~-~~g~~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~-----~~~~~~~~~~l~~~G~~v~~~d~~G~G~s 89 (270)
T 3pfb_A 21 GMATITLE-RDGLQLVGTREEPFG-----EIYDMAIIFHGFTANRN-----TSLLREIANSLRDENIASVRFDFNGHGDS 89 (270)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSS-----SSEEEEEEECCTTCCTT-----CHHHHHHHHHHHHTTCEEEEECCTTSTTS
T ss_pred cceEEEec-cCCEEEEEEEEcCCC-----CCCCEEEEEcCCCCCcc-----ccHHHHHHHHHHhCCcEEEEEccccccCC
Confidence 34555555 488999999999865 35799999999776521 11244567889999999999999999988
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 456 (550)
...........+ .+|+.++++++.++. +.++++|+|||+||++++.++.++|++++++|+.+|...........
T Consensus 90 ~~~~~~~~~~~~----~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~ 163 (270)
T 3pfb_A 90 DGKFENMTVLNE----IEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEG 163 (270)
T ss_dssp SSCGGGCCHHHH----HHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHT
T ss_pred CCCCCccCHHHH----HHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhh
Confidence 654332211222 678899999998764 33599999999999999999999999999999999876532100000
Q ss_pred -hhhccCCCCCC---------------ccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 457 -TEKYMGLPSED---------------PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 457 -~~~~~g~~~~~---------------~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
.......+... ...+...+....+.++++|+|+++|+.|..+|++.+.++.+++ .+.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~ 239 (270)
T 3pfb_A 164 NTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIY----QNSTLH 239 (270)
T ss_dssp EETTEECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHC----SSEEEE
T ss_pred hhhccccCcccccccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhC----CCCeEE
Confidence 00000000000 0112233455677889999999999999999999888877664 468999
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++++|.+. .++...+.+.+.+||+++
T Consensus 240 ~~~~~gH~~~-~~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 240 LIEGADHCFS-DSYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp EETTCCTTCC-THHHHHHHHHHHHHHC--
T ss_pred EcCCCCcccC-ccchHHHHHHHHHHHhhc
Confidence 9999999974 567788999999999764
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=205.75 Aligned_cols=241 Identities=15% Similarity=0.107 Sum_probs=162.8
Q ss_pred CeEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC--CCCC
Q 008873 298 PDIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--RGTA 374 (550)
Q Consensus 298 ~~~~~~~~-~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~--rG~g 374 (550)
.+.+++.+ ..|..+.+.+|.|++.. .+++|+||++||+++... .|.. .....+.++++||+|+++|+ ||.+
T Consensus 16 ~~~~~~~s~~~~~~~~~~v~~P~~~~--~~~~p~vv~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~vv~~d~~~rG~~ 89 (282)
T 3fcx_A 16 QKVFEHDSVELNCKMKFAVYLPPKAE--TGKCPALYWLSGLTCTEQ---NFIS-KSGYHQSASEHGLVVIAPDTSPRGCN 89 (282)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG--TSCEEEEEEECCTTCCSH---HHHH-HSCCHHHHHHHTCEEEEECSCSSCCC
T ss_pred EEEEEEEchhcCCeeEEEEEcCCCCC--CCCCCEEEEEcCCCCCcc---chhh-cchHHHHhhcCCeEEEEeccccCccc
Confidence 34455554 46788999999998742 268999999999876532 2211 11125778899999999999 8877
Q ss_pred CCchhhHH------HHhhccCC-------CchHHHH-HHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 375 RRGLKFEA------SIKHNCGR-------IDAEDQL-TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 375 ~~~~~~~~------~~~~~~~~-------~~~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
.++..... ........ ....++. ++++++.++..+|++||+|+|+||||++++.++.++|++|+++
T Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 169 (282)
T 3fcx_A 90 IKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSV 169 (282)
T ss_dssp C--------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCE
T ss_pred cccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEE
Confidence 65432100 00000000 1122233 4455555455588999999999999999999999999999999
Q ss_pred EEcCCcCCcccccc--hhhhhccCCCCCCccccccCChhhhhhcC---CCcEEEEecCCCCCCChHH--HHHHHHHHHHc
Q 008873 441 VSGAPVTSWDGYDT--FYTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHFRH--TARLINALVAA 513 (550)
Q Consensus 441 v~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~~~--~~~~~~~l~~~ 513 (550)
++.+|+.+...... .....+++.. ...+...++...+.++ ++|+|++||+.|..+|..+ +.++.++|++.
T Consensus 170 v~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~~l~~~ 246 (282)
T 3fcx_A 170 SAFAPICNPVLCPWGKKAFSGYLGTD---QSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAACTEK 246 (282)
T ss_dssp EEESCCCCGGGSHHHHHHHHHHHC------CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHHHHHHHT
T ss_pred EEeCCccCcccCchhHHHHHHhcCCc---hhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHHHHHHHc
Confidence 99999887543211 1112233322 2344555666555555 6899999999999986655 56899999999
Q ss_pred CCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 514 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 514 ~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+.++++.++|+++|.+.. ...+....++|+.++|
T Consensus 247 g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l 280 (282)
T 3fcx_A 247 KIPVVFRLQEDYDHSYYF---IATFITDHIRHHAKYL 280 (282)
T ss_dssp TCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcCHHH---HHhhhHHHHHHHHHhh
Confidence 999999999999998733 4456677888888875
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=201.77 Aligned_cols=233 Identities=17% Similarity=0.136 Sum_probs=164.9
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCc-eeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCV-QLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
..+.+++++.+|..+.++++.|.+. ++.|+||++||+++. .. .| .. ...++++||.|+++|+||+|.
T Consensus 55 ~~~~~~~~~~~g~~i~~~~~~P~~~----~~~p~vv~~HG~~~~~~~---~~----~~-~~~l~~~g~~v~~~d~rg~g~ 122 (318)
T 1l7a_A 55 KVYRLTYKSFGNARITGWYAVPDKE----GPHPAIVKYHGYNASYDG---EI----HE-MVNWALHGYATFGMLVRGQQR 122 (318)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEESSC----SCEEEEEEECCTTCCSGG---GH----HH-HHHHHHTTCEEEEECCTTTSS
T ss_pred EEEEEEEEccCCCEEEEEEEeeCCC----CCccEEEEEcCCCCCCCC---Cc----cc-ccchhhCCcEEEEecCCCCCC
Confidence 4577888888899999999999762 578999999998765 32 22 22 346778899999999999998
Q ss_pred CchhhHHHH-----hhccCC---------CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEE
Q 008873 376 RGLKFEASI-----KHNCGR---------IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV 441 (550)
Q Consensus 376 ~~~~~~~~~-----~~~~~~---------~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v 441 (550)
+...+.... ....+. ...+|+.++++++.++..+|.++|+|+|||+||.+++.++..+|+ +++++
T Consensus 123 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v 201 (318)
T 1l7a_A 123 SEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAV 201 (318)
T ss_dssp SCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEE
T ss_pred CCCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEE
Confidence 765421000 000000 127899999999999988899999999999999999999999887 46666
Q ss_pred EcCCcCC-cccccch-----hh--hhcc---CCCCCCc---cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHH
Q 008873 442 SGAPVTS-WDGYDTF-----YT--EKYM---GLPSEDP---VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLI 507 (550)
Q Consensus 442 ~~~~~~~-~~~~~~~-----~~--~~~~---g~~~~~~---~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~ 507 (550)
+.+|... +...... +. ..++ +.+.... ......++...+.++++|+|+++|+.|..+|+..+.+++
T Consensus 202 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~ 281 (318)
T 1l7a_A 202 ADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAY 281 (318)
T ss_dssp EESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHH
T ss_pred ecCCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCCCCCcccHHHHH
Confidence 6777532 2111000 00 0000 0000000 111223466678889999999999999999999999988
Q ss_pred HHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 508 NALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 508 ~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+++ ..++++.++|+++|.. ..+..+.+.+||+++|
T Consensus 282 ~~l---~~~~~~~~~~~~~H~~-----~~~~~~~~~~fl~~~l 316 (318)
T 1l7a_A 282 NHL---ETKKELKVYRYFGHEY-----IPAFQTEKLAFFKQIL 316 (318)
T ss_dssp HHC---CSSEEEEEETTCCSSC-----CHHHHHHHHHHHHHHH
T ss_pred hhc---CCCeeEEEccCCCCCC-----cchhHHHHHHHHHHHh
Confidence 876 3358999999999983 2356788999998874
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-24 Score=208.14 Aligned_cols=236 Identities=12% Similarity=0.104 Sum_probs=159.9
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~ 376 (550)
.+.+.+.. +..+.+.+|.|.......++.|+||++|||+........ ..|..+...|+ +.||.|+++|+||.+..
T Consensus 55 ~~~v~~~~--~~~~~~~~~~P~~~~~~~~~~p~vv~~HGgg~~~~~~~~--~~~~~~~~~la~~~g~~vv~~d~rg~~~~ 130 (338)
T 2o7r_A 55 TKDLALNP--LHNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAAS--TIFHDFCCEMAVHAGVVIASVDYRLAPEH 130 (338)
T ss_dssp EEEEEEET--TTTEEEEEEEEGGGGGSSCCEEEEEEECCSTTTSCCTTB--HHHHHHHHHHHHHHTCEEEEEECCCTTTT
T ss_pred EEEEEecC--CCCeEEEEEeCCCCCcCCCCceEEEEEcCCcCcCCCCCc--hhHHHHHHHHHHHCCcEEEEecCCCCCCC
Confidence 45666665 455778888886530112578999999998754321111 11344567777 78999999999998754
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcC------CCCCCceEEEEechhHHHHHHHHhhCCC--------eeEEEEE
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQG------LAKVGHIGLYGWSYGGYLSAITLARFPD--------VFQCAVS 442 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~------~~d~~~i~i~G~S~GG~~a~~~~~~~~~--------~~~~~v~ 442 (550)
... ..++|+.++++|+.++. .+|.++|+|+|||+||.+++.++.++|+ +++++|+
T Consensus 131 ~~~-----------~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl 199 (338)
T 2o7r_A 131 RLP-----------AAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVL 199 (338)
T ss_dssp CTT-----------HHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEE
T ss_pred CCc-----------hHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEE
Confidence 311 12789999999998762 2677899999999999999999998887 8999999
Q ss_pred cCCcCCcccccch-----------------hhhhcc--CCCCCCc--cccccCC---hhhhhhcCCCcEEEEecCCCCCC
Q 008873 443 GAPVTSWDGYDTF-----------------YTEKYM--GLPSEDP--VGYEYSS---VMHHVHKMKGKLLLVHGMIDENV 498 (550)
Q Consensus 443 ~~~~~~~~~~~~~-----------------~~~~~~--g~~~~~~--~~~~~~~---~~~~~~~i~~P~lii~G~~D~~v 498 (550)
.+|+.+....... +...++ +.....+ ......+ .+..+.++.+|+||++|+.|..+
T Consensus 200 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~ 279 (338)
T 2o7r_A 200 DEPGFGGSKRTGSELRLANDSRLPTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMI 279 (338)
T ss_dssp ESCCCCCSSCCHHHHHTTTCSSSCHHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTSTTH
T ss_pred ECCccCCCcCChhhhccCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCCcch
Confidence 9998764321100 000111 1000000 0001111 12334456679999999999988
Q ss_pred ChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC--CCcHHHHHHHHHHHHHHhC
Q 008873 499 HFRHTARLINALVAARKPYEILIFPDERHMPRR--HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 499 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~--~~~~~~~~~~~~~fl~~~l 550 (550)
+ .+.+++++|++.+.+++++++++++|.+.. ++....+.+.+.+||++++
T Consensus 280 ~--~~~~~~~~l~~~~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~ 331 (338)
T 2o7r_A 280 D--RQMELAERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSC 331 (338)
T ss_dssp H--HHHHHHHHHHHTTCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC---
T ss_pred H--HHHHHHHHHHHCCCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhc
Confidence 7 567888999999999999999999998733 2344788999999998764
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=205.48 Aligned_cols=231 Identities=20% Similarity=0.215 Sum_probs=166.6
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhC-CcEEEEECCCCCC
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-GILVWKLDNRGTA 374 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~-G~~vv~~d~rG~g 374 (550)
...+.+++++.+| .+.+++|.|.+. .++.|+||++|||+....... .+..+...|+++ ||.|+++|+||.+
T Consensus 46 ~~~~~~~i~~~~g-~l~~~~~~P~~~---~~~~p~vv~~HGGg~~~g~~~----~~~~~~~~la~~~g~~v~~~d~rg~~ 117 (310)
T 2hm7_A 46 AEVREFDMDLPGR-TLKVRMYRPEGV---EPPYPALVYYHGGSWVVGDLE----THDPVCRVLAKDGRAVVFSVDYRLAP 117 (310)
T ss_dssp SEEEEEEEEETTE-EEEEEEEECTTC---CSSEEEEEEECCSTTTSCCTT----TTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred ceEEEEEeccCCC-eEEEEEEecCCC---CCCCCEEEEECCCccccCChh----HhHHHHHHHHHhcCCEEEEeCCCCCC
Confidence 3567888888887 899999999763 156899999999764332122 334457778775 9999999999988
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHcC---CCCCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCcC
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVT 447 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~~ 447 (550)
++... ...+|+.++++|+.++. .+|.++|+|+|+|+||.+++.++.++++ .++++++.+|..
T Consensus 118 ~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~ 186 (310)
T 2hm7_A 118 EHKFP-----------AAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPST 186 (310)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCC
T ss_pred CCCCC-----------ccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCc
Confidence 65421 12688999999998874 3688999999999999999999987665 689999999987
Q ss_pred Ccc--cccch-----------------hhhhccCCCCCCccccccCChhh--hhhcCCCcEEEEecCCCCCCChHHHHHH
Q 008873 448 SWD--GYDTF-----------------YTEKYMGLPSEDPVGYEYSSVMH--HVHKMKGKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 448 ~~~--~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~~~--~~~~i~~P~lii~G~~D~~v~~~~~~~~ 506 (550)
+.. ..... +...+.+.+.. ......+|.. .+.++ .|+||+||+.|..+ .++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~--~~~~~~ 261 (310)
T 2hm7_A 187 GYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEE--LTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR--DVGKLY 261 (310)
T ss_dssp CCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGG--GGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--HHHHHH
T ss_pred CCCcccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCc--cCCccCCCCcCccccCC-CCEEEEEecCCCch--HHHHHH
Confidence 764 21110 11111111100 0001122322 12222 39999999999987 678899
Q ss_pred HHHHHHcCCCeEEEEcCCCCCcCCC----CCcHHHHHHHHHHHHHHhC
Q 008873 507 INALVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 507 ~~~l~~~~~~~~~~~~p~~~H~~~~----~~~~~~~~~~~~~fl~~~l 550 (550)
++++.+.+.+++++++|+++|.+.. .+....+.+.+.+||+++|
T Consensus 262 ~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 309 (310)
T 2hm7_A 262 AEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 309 (310)
T ss_dssp HHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998743 2445778999999998874
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=206.40 Aligned_cols=237 Identities=20% Similarity=0.256 Sum_probs=167.1
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+.+.+.||..+.++++.|.+. ..++.|+||++||+++... .|. ..+.+.|+++||.|+++|+||+|.+
T Consensus 67 ~~~~~~~~~~~g~~~~~~~~~p~~~--~~~~~p~vv~~hG~~~~~~---~~~---~~~~~~l~~~G~~v~~~d~~g~g~s 138 (367)
T 2hdw_A 67 EHRKVTFANRYGITLAADLYLPKNR--GGDRLPAIVIGGPFGAVKE---QSS---GLYAQTMAERGFVTLAFDPSYTGES 138 (367)
T ss_dssp EEEEEEEECTTSCEEEEEEEEESSC--CSSCEEEEEEECCTTCCTT---SHH---HHHHHHHHHTTCEEEEECCTTSTTS
T ss_pred eeEEEEEecCCCCEEEEEEEeCCCC--CCCCCCEEEEECCCCCcch---hhH---HHHHHHHHHCCCEEEEECCCCcCCC
Confidence 4578899998999999999999762 1257899999999765432 221 1257888999999999999999876
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc----cc
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD----GY 452 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~----~~ 452 (550)
........ ......+|+.++++++.++..+|.++|+|+|||+||.+++.++.++|+ ++++|+.+|..... .+
T Consensus 139 ~~~~~~~~---~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~-~~~~v~~~p~~~~~~~~~~~ 214 (367)
T 2hdw_A 139 GGQPRNVA---SPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKR-VKAVVTSTMYDMTRVMSKGY 214 (367)
T ss_dssp CCSSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCCHHHHHHHTT
T ss_pred CCcCcccc---chhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCCC-ccEEEEeccccccHHHhhhh
Confidence 54321100 001237899999999999888889999999999999999999999885 78899888753100 00
Q ss_pred cch---------------------------------------------hhhhcc---C-CCC----------CCcccccc
Q 008873 453 DTF---------------------------------------------YTEKYM---G-LPS----------EDPVGYEY 473 (550)
Q Consensus 453 ~~~---------------------------------------------~~~~~~---g-~~~----------~~~~~~~~ 473 (550)
... ..+.+. + .+. .....+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (367)
T 2hdw_A 215 NDSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMN 294 (367)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcC
Confidence 000 000000 0 000 01122234
Q ss_pred CChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 474 SSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 474 ~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.++...+.+++ +|+|++||++|. ++..+.+++++ .+.+++++++|+++|.+........+.+.+.+||+++|
T Consensus 295 ~~~~~~~~~i~~~PvLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 295 MPILTYIKEISPRPILLIHGERAH--SRYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIPFDRIAGFFDEHL 367 (367)
T ss_dssp SCSCTTGGGGTTSCEEEEEETTCT--THHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSCHHHHHHHHHHHC
T ss_pred CChhHhHHhhcCCceEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHHHHHHHHHHHhhC
Confidence 45667788899 999999999998 78888877765 57789999999999984211111116788999999886
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=200.50 Aligned_cols=231 Identities=18% Similarity=0.151 Sum_probs=164.4
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhC-CcEEEEECCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-GILVWKLDNRGT 373 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~-G~~vv~~d~rG~ 373 (550)
....+.+++++.+| .+.+.+|.|... ++.|+||++|||+....... .+..+...|+++ ||.|+++|+||+
T Consensus 45 ~~~~~~~~i~~~~g-~i~~~~~~p~~~----~~~p~vv~~HGgg~~~g~~~----~~~~~~~~la~~~g~~v~~~d~rg~ 115 (311)
T 2c7b_A 45 IAETRDVHIPVSGG-SIRARVYFPKKA----AGLPAVLYYHGGGFVFGSIE----THDHICRRLSRLSDSVVVSVDYRLA 115 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSSC----SSEEEEEEECCSTTTSCCTG----GGHHHHHHHHHHHTCEEEEECCCCT
T ss_pred cceEEEEEecCCCC-cEEEEEEecCCC----CCCcEEEEECCCcccCCChh----hhHHHHHHHHHhcCCEEEEecCCCC
Confidence 34567888988888 899999999753 45799999999873211111 234456777765 999999999999
Q ss_pred CCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC---CCCCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCc
Q 008873 374 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPV 446 (550)
Q Consensus 374 g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~ 446 (550)
|.+... ...+|+.++++++.+.. .+|+++|+|+|+|+||++++.++.++++ +++++++.+|+
T Consensus 116 g~~~~~-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~ 184 (311)
T 2c7b_A 116 PEYKFP-----------TAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPV 184 (311)
T ss_dssp TTSCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCC
T ss_pred CCCCCC-----------ccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCc
Confidence 876421 12678899999988762 4678899999999999999999987654 58999999998
Q ss_pred CCcccccc--------------------hhhhhccCCCCCCccccccCChhh-hhhcCCCcEEEEecCCCCCCChHHHHH
Q 008873 447 TSWDGYDT--------------------FYTEKYMGLPSEDPVGYEYSSVMH-HVHKMKGKLLLVHGMIDENVHFRHTAR 505 (550)
Q Consensus 447 ~~~~~~~~--------------------~~~~~~~g~~~~~~~~~~~~~~~~-~~~~i~~P~lii~G~~D~~v~~~~~~~ 505 (550)
.++..... ++...+++.+.. ......+++. .+..+ .|+|+++|+.|..++ .+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~~--~~~~ 259 (311)
T 2c7b_A 185 VNMTGVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEE--AYDFKASPLLADLGGL-PPALVVTAEYDPLRD--EGEL 259 (311)
T ss_dssp CCCSSCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTG--GGSTTTCGGGSCCTTC-CCEEEEEETTCTTHH--HHHH
T ss_pred cCCccccccCCccHHHhccCCCCHHHHHHHHHHhCCCCcc--ccCcccCcccccccCC-CcceEEEcCCCCchH--HHHH
Confidence 87421100 111122222111 0011122322 22333 399999999999875 5677
Q ss_pred HHHHHHHcCCCeEEEEcCCCCCcCCC----CCcHHHHHHHHHHHHHHhC
Q 008873 506 LINALVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 506 ~~~~l~~~~~~~~~~~~p~~~H~~~~----~~~~~~~~~~~~~fl~~~l 550 (550)
+.++++..+.+++++++|+++|.+.. .+....+.+.+.+||+++|
T Consensus 260 ~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (311)
T 2c7b_A 260 YAYKMKASGSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGL 308 (311)
T ss_dssp HHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999998842 3455788999999999875
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=185.51 Aligned_cols=209 Identities=22% Similarity=0.247 Sum_probs=159.9
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
...+.+.+++.+| .+.++++.|.+. ++++.|+||++||++........ ..+..+++.|+++||.|+++|+||+|.
T Consensus 8 ~~~~~~~~~~~~g-~~~~~~~~p~~~--~~~~~~~vv~~HG~~~~~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~g~g~ 82 (220)
T 2fuk_A 8 TESAALTLDGPVG-PLDVAVDLPEPD--VAVQPVTAIVCHPLSTEGGSMHN--KVVTMAARALRELGITVVRFNFRSVGT 82 (220)
T ss_dssp SSCEEEEEEETTE-EEEEEEECCCTT--SCCCSEEEEEECSCTTTTCSTTC--HHHHHHHHHHHTTTCEEEEECCTTSTT
T ss_pred ccceEEEEeCCCC-eEEEEEEeCCCC--CccccCEEEEECCCCCcCCcccc--hHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4568899999988 899999999763 11357999999996432111111 123446788899999999999999987
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 455 (550)
+...+ .......+|+.++++++.++. +.++|+++|||+||.+++.++.++ .++++|+.+|..+...
T Consensus 83 s~~~~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~---- 148 (220)
T 2fuk_A 83 SAGSF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD---- 148 (220)
T ss_dssp CCSCC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC----
T ss_pred CCCCc------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh----
Confidence 76443 112234789999999998875 667999999999999999999887 7899999888765322
Q ss_pred hhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH
Q 008873 456 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 535 (550)
Q Consensus 456 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~ 535 (550)
+. .+. ...|+|+++|++|..+|++.+.++++++ ..+++++++++++|.+.. ..
T Consensus 149 ---------------~~------~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~H~~~~--~~ 201 (220)
T 2fuk_A 149 ---------------FS------DVQ-PPAQWLVIQGDADEIVDPQAVYDWLETL---EQQPTLVRMPDTSHFFHR--KL 201 (220)
T ss_dssp ---------------CT------TCC-CCSSEEEEEETTCSSSCHHHHHHHHTTC---SSCCEEEEETTCCTTCTT--CH
T ss_pred ---------------hh------hcc-cCCcEEEEECCCCcccCHHHHHHHHHHh---CcCCcEEEeCCCCceehh--hH
Confidence 00 011 1479999999999999999988888766 257899999999999855 35
Q ss_pred HHHHHHHHHHHHHhC
Q 008873 536 IYMEERIWEFIERTL 550 (550)
Q Consensus 536 ~~~~~~~~~fl~~~l 550 (550)
..+.+.+.+||.++|
T Consensus 202 ~~~~~~i~~~l~~~l 216 (220)
T 2fuk_A 202 IDLRGALQHGVRRWL 216 (220)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 678899999998875
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=198.88 Aligned_cols=241 Identities=13% Similarity=0.103 Sum_probs=168.8
Q ss_pred CeEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 298 PDIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 298 ~~~~~~~~-~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
.+.+++.+ ..|..+.+.++.|.+.. .+++|+||++||+++... .|... ....+++.+.||+|+++|+||+|.+
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~--~~~~p~vv~lHG~~~~~~---~~~~~-~~~~~~~~~~g~~vv~~d~~g~G~s 88 (278)
T 3e4d_A 15 QGVFSHQSETLKSEMTFAVYVPPKAI--HEPCPVVWYLSGLTCTHA---NVMEK-GEYRRMASELGLVVVCPDTSPRGND 88 (278)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG--TSCEEEEEEECCTTCCSH---HHHHH-SCCHHHHHHHTCEEEECCSSCCSTT
T ss_pred EEEEEEeccccCCcceEEEEcCCCCC--CCCCCEEEEEcCCCCCcc---chhhc-ccHHHHHhhCCeEEEecCCcccCcc
Confidence 45566654 46788999999998642 368999999999866543 22111 1134566677999999999988765
Q ss_pred chhhHHH--------Hhhcc------CCCchHHH-H-HHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 377 GLKFEAS--------IKHNC------GRIDAEDQ-L-TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 377 ~~~~~~~--------~~~~~------~~~~~~D~-~-~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
....... ...+. +.....+. . ++++++.+...+|+++|+|+||||||++++.++.++|++|+++
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 168 (278)
T 3e4d_A 89 VPDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSC 168 (278)
T ss_dssp SCCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCE
T ss_pred cccccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceE
Confidence 3211000 00000 01112222 2 3566676665678899999999999999999999999999999
Q ss_pred EEcCCcCCccccc--chhhhhccCCCCCCccccccCChhhhhhcCC--CcEEEEecCCCCCCChHH-HHHHHHHHHHcCC
Q 008873 441 VSGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRH-TARLINALVAARK 515 (550)
Q Consensus 441 v~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~ 515 (550)
++.+|+.+..... ......+++. ....+...++...+.+++ +|+||+||+.|..++.+. +.++.++|++.+.
T Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~g~ 245 (278)
T 3e4d_A 169 SAFAPIVAPSSADWSEPALEKYLGA---DRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKGTDI 245 (278)
T ss_dssp EEESCCSCGGGCTTTHHHHHHHHCS---CGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTTSSC
T ss_pred EEeCCcccccCCccchhhHHHhcCC---cHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHHHHHcCC
Confidence 9999987754321 1111223332 334566677777777765 499999999999988533 7889999999999
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++++.++|+++|.+.. .....+.+++|+.++|
T Consensus 246 ~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l 277 (278)
T 3e4d_A 246 GLTLRMHDRYDHSYYF---ISTFMDDHLKWHAERL 277 (278)
T ss_dssp EEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCcCHHH---HHHHHHHHHHHHHHhc
Confidence 9999999999998733 4456788889998765
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=197.65 Aligned_cols=242 Identities=14% Similarity=0.056 Sum_probs=168.3
Q ss_pred CCeEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~-~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
..+.+++.+ .+|..+.+.+|.|++.. ..+++|+||++||+++... .|... ....+++++.|++|+++|.++.|.
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~-~~~~~p~vv~lHG~~~~~~---~~~~~-~~~~~~~~~~g~~vv~pd~~~~g~ 90 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQAS-TGAKVPVLYWLSGLTCSDE---NFMQK-AGAQRLAAELGIAIVAPDTSPRGE 90 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG-TTCCEEEEEEECCTTCCSS---HHHHH-SCCHHHHHHHTCEEEEECSSCCST
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCC-CCCCccEEEEecCCCCChh---HHhhc-ccHHHHHhhCCeEEEEeCCccccc
Confidence 346666665 46789999999998742 2368999999999876532 23211 113566778899999999886543
Q ss_pred Cch-----------hh-HHHHhhcc-CCCc-hHHH-HHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 376 RGL-----------KF-EASIKHNC-GRID-AEDQ-LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 376 ~~~-----------~~-~~~~~~~~-~~~~-~~D~-~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
... .+ .......+ .... ...+ .+.+.++.++..+ +++|+|+|+|+||++++.++.++|++|+++
T Consensus 91 ~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 169 (280)
T 3i6y_A 91 GVADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSV 169 (280)
T ss_dssp TCCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCE
T ss_pred ccCcccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEE
Confidence 211 00 00000000 0001 1222 2445555554433 689999999999999999999999999999
Q ss_pred EEcCCcCCccccc--chhhhhccCCCCCCccccccCChhhhhhcCC--CcEEEEecCCCCCCChHH-HHHHHHHHHHcCC
Q 008873 441 VSGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRH-TARLINALVAARK 515 (550)
Q Consensus 441 v~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~ 515 (550)
++.+|+.+..... ......+++. +...+...++...+.+++ +|+||+||+.|..++.+. +.++.++|++.++
T Consensus 170 v~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~~~g~ 246 (280)
T 3i6y_A 170 SAFSPINNPVNCPWGQKAFTAYLGK---DTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSNNY 246 (280)
T ss_dssp EEESCCCCGGGSHHHHHHHHHHHCS---CGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHHHHTTC
T ss_pred EEeCCccccccCchHHHHHHHhcCC---chHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHHHHcCC
Confidence 9999988754321 1111223332 345566778888888886 799999999999998765 8999999999999
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++++.++|+++|.+. ......+..++|+.++|
T Consensus 247 ~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l 278 (280)
T 3i6y_A 247 PLELRSHEGYDHSYY---FIASFIEDHLRFHSNYL 278 (280)
T ss_dssp CEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCccHH---HHHHhHHHHHHHHHhhc
Confidence 999999999999873 34566788899998875
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=199.24 Aligned_cols=232 Identities=14% Similarity=0.083 Sum_probs=162.7
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCC-------------CCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcE
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRY-------------GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGIL 364 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~-------------~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~ 364 (550)
+.+.+.. +..+.+.+|.|..... ..++.|+||++|||+........ ..|..+...|+ +.||.
T Consensus 73 ~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~--~~~~~~~~~la~~~g~~ 148 (351)
T 2zsh_A 73 FDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANS--AIYDTLCRRLVGLCKCV 148 (351)
T ss_dssp EEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTB--HHHHHHHHHHHHHHTSE
T ss_pred EEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcc--hhHHHHHHHHHHHcCCE
Confidence 4555554 4558888998876410 12578999999998754321111 11344567787 78999
Q ss_pred EEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC----CCCCC-ceEEEEechhHHHHHHHHhhCCC---e
Q 008873 365 VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG----LAKVG-HIGLYGWSYGGYLSAITLARFPD---V 436 (550)
Q Consensus 365 vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d~~-~i~i~G~S~GG~~a~~~~~~~~~---~ 436 (550)
|+++|+||++..... ..++|+.++++|+.++. .+|.+ +|+|+|+|+||.+++.++.++++ +
T Consensus 149 vv~~d~rg~~~~~~~-----------~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~~~ 217 (351)
T 2zsh_A 149 VVSVNYRRAPENPYP-----------CAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID 217 (351)
T ss_dssp EEEECCCCTTTSCTT-----------HHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTTCC
T ss_pred EEEecCCCCCCCCCc-----------hhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccCCC
Confidence 999999998754321 12789999999998764 47899 99999999999999999998887 8
Q ss_pred eEEEEEcCCcCCcccccch-----------------hhhhccCCCCCCccccccCCh----hhhhhcCCC-cEEEEecCC
Q 008873 437 FQCAVSGAPVTSWDGYDTF-----------------YTEKYMGLPSEDPVGYEYSSV----MHHVHKMKG-KLLLVHGMI 494 (550)
Q Consensus 437 ~~~~v~~~~~~~~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~----~~~~~~i~~-P~lii~G~~ 494 (550)
++++|+.+|+.+....... +...++..... ......++ ...+.++++ |+||++|+.
T Consensus 218 v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~i~~pP~Lii~G~~ 295 (351)
T 2zsh_A 218 VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGED--REHPACNPFSPRGKSLEGVSFPKSLVVVAGL 295 (351)
T ss_dssp CCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCC--TTSTTTCTTSTTSCCCTTCCCCEEEEEEETT
T ss_pred eeEEEEECCccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCC--CCCcccCCCCCCccchhhCCCCCEEEEEcCC
Confidence 9999999998764321100 00111110000 00011111 123445565 999999999
Q ss_pred CCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC---CCcHHHHHHHHHHHHHHh
Q 008873 495 DENVHFRHTARLINALVAARKPYEILIFPDERHMPRR---HRDRIYMEERIWEFIERT 549 (550)
Q Consensus 495 D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~---~~~~~~~~~~~~~fl~~~ 549 (550)
|..++ .+.+++++|++.+.+++++++++++|.+.. .+....+.+.+.+||+++
T Consensus 296 D~~~~--~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~~ 351 (351)
T 2zsh_A 296 DLIRD--WQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNAE 351 (351)
T ss_dssp STTHH--HHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC-
T ss_pred CcchH--HHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 99876 678899999999999999999999998743 356788999999999864
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=196.72 Aligned_cols=230 Identities=15% Similarity=0.117 Sum_probs=164.1
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCC
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTA 374 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g 374 (550)
...+.++++..+| .+.+++|.|.+. ++.|+||++|||+....... .+..+...|++ .||.|+++|+||++
T Consensus 63 ~~~~~~~i~~~~~-~i~~~iy~P~~~----~~~p~vv~~HGGg~~~g~~~----~~~~~~~~La~~~g~~Vv~~Dyrg~~ 133 (323)
T 3ain_A 63 GKIEDITIPGSET-NIKARVYYPKTQ----GPYGVLVYYHGGGFVLGDIE----SYDPLCRAITNSCQCVTISVDYRLAP 133 (323)
T ss_dssp SEEEEEEEECSSS-EEEEEEEECSSC----SCCCEEEEECCSTTTSCCTT----TTHHHHHHHHHHHTSEEEEECCCCTT
T ss_pred cEEEEEEecCCCC-eEEEEEEecCCC----CCCcEEEEECCCccccCChH----HHHHHHHHHHHhcCCEEEEecCCCCC
Confidence 3467888888777 899999999752 56799999999864322122 23445677775 59999999999998
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHcC-CC-CCCceEEEEechhHHHHHHHHhhCCCee---EEEEEcCCcCCc
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG-LA-KVGHIGLYGWSYGGYLSAITLARFPDVF---QCAVSGAPVTSW 449 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~-d~~~i~i~G~S~GG~~a~~~~~~~~~~~---~~~v~~~~~~~~ 449 (550)
.+... ...+|+.++++|+.++. .. |.++|+|+|+|+||.+++.++.+++++. +++++.+|+.+.
T Consensus 134 ~~~~p-----------~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~ 202 (323)
T 3ain_A 134 ENKFP-----------AAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSF 202 (323)
T ss_dssp TSCTT-----------HHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSC
T ss_pred CCCCc-----------chHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccC
Confidence 65321 12688999999998763 12 7889999999999999999998776654 888999998775
Q ss_pred ccccch-----------------hhhhccCCCCCCccccccCChhhh-hhcCCCcEEEEecCCCCCCChHHHHHHHHHHH
Q 008873 450 DGYDTF-----------------YTEKYMGLPSEDPVGYEYSSVMHH-VHKMKGKLLLVHGMIDENVHFRHTARLINALV 511 (550)
Q Consensus 450 ~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~~~~-~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 511 (550)
...... +...+++.+.. ......+|+.. +..+ .|+||++|+.|..+ .++..++++|.
T Consensus 203 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~sp~~~~l~~l-~P~lii~G~~D~l~--~~~~~~a~~l~ 277 (323)
T 3ain_A 203 DLITKSLYDNGEGFFLTREHIDWFGQQYLRSFAD--LLDFRFSPILADLNDL-PPALIITAEHDPLR--DQGEAYANKLL 277 (323)
T ss_dssp CSCCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGG--GGCTTTCGGGSCCTTC-CCEEEEEETTCTTH--HHHHHHHHHHH
T ss_pred CCCCccHHHhccCCCCCHHHHHHHHHHhCCCCcc--cCCcccCcccCcccCC-CHHHEEECCCCccH--HHHHHHHHHHH
Confidence 422111 11112221110 00112233332 2222 49999999999987 57888999999
Q ss_pred HcCCCeEEEEcCCCCCcCCC----CCcHHHHHHHHHHHHHHhC
Q 008873 512 AARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 512 ~~~~~~~~~~~p~~~H~~~~----~~~~~~~~~~~~~fl~~~l 550 (550)
+.++++++.++|+++|.+.. .+....+.+.+.+||+++|
T Consensus 278 ~ag~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 320 (323)
T 3ain_A 278 QSGVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVF 320 (323)
T ss_dssp HTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999743 2456788999999998764
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=196.18 Aligned_cols=242 Identities=12% Similarity=0.077 Sum_probs=166.7
Q ss_pred CCeEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~-~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
..+.+++.+ ..|..+.+.+|.|++.. ..+++|+||++||+++... .|.. .....+.+++.|++|+++|.++.|.
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~-~~~~~P~vv~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~vv~~d~~~~g~ 88 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGAS-ESNKVPVLYWLSGLTCTDE---NFMQ-KAGAFKKAAELGIAIVAPDTSPRGD 88 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCB-TTBCEEEEEEECCTTCCSH---HHHH-HSCCHHHHHHHTCEEEECCSSCCST
T ss_pred eEEEEEEechhcCCceEEEEEcCCCCC-CCCCcCEEEEeCCCCCChh---hhhc-chhHHHHHhhCCeEEEEeCCccccc
Confidence 345667765 46789999999998753 2368999999999866532 2321 1113567778899999999775442
Q ss_pred C-----------chhhH-HHHhhcc-CCCc-hHHHH-HHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 376 R-----------GLKFE-ASIKHNC-GRID-AEDQL-TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 376 ~-----------~~~~~-~~~~~~~-~~~~-~~D~~-~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
. |..+. ......+ +... ..++. +.+.++.+...+ .++++|+|+||||++++.++.++|++|+++
T Consensus 89 ~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~ 167 (280)
T 3ls2_A 89 NVPNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSA 167 (280)
T ss_dssp TSCCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCE
T ss_pred ccccccccccccCCccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEE
Confidence 2 11100 0000000 0011 12222 334455544333 489999999999999999999999999999
Q ss_pred EEcCCcCCcccccc--hhhhhccCCCCCCccccccCChhhhhhcCC----CcEEEEecCCCCCCChHH-HHHHHHHHHHc
Q 008873 441 VSGAPVTSWDGYDT--FYTEKYMGLPSEDPVGYEYSSVMHHVHKMK----GKLLLVHGMIDENVHFRH-TARLINALVAA 513 (550)
Q Consensus 441 v~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~----~P~lii~G~~D~~v~~~~-~~~~~~~l~~~ 513 (550)
++.+|+.+...... .....+++. ....+...++...+++++ +|+|++||+.|..++.+. +.+++++|++.
T Consensus 168 ~~~s~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~ 244 (280)
T 3ls2_A 168 SAFSPIVNPINCPWGVKAFTGYLGA---DKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAKQK 244 (280)
T ss_dssp EEESCCSCGGGSHHHHHHHHHHHCS---CGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHHHH
T ss_pred EEecCccCcccCcchhhHHHhhcCc---hHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHHHHh
Confidence 99999887643211 111233332 345566777878887775 499999999999999754 88999999999
Q ss_pred CCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 514 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 514 ~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++++++.++|+++|.+.. ........++|+.++|
T Consensus 245 g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l 278 (280)
T 3ls2_A 245 DYPLTLEMQTGYDHSYFF---ISSFIDQHLVFHHQYL 278 (280)
T ss_dssp TCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCchhh---HHHHHHHHHHHHHHHh
Confidence 999999999999998732 4456778889998875
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=199.38 Aligned_cols=229 Identities=14% Similarity=0.063 Sum_probs=166.2
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGT 373 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~ 373 (550)
....+.+++++.+|..|.+++|.|.. ++.|+||++|||+....... .+......|+ ..||.|+++|||+.
T Consensus 57 ~~~~~~~~i~~~~G~~i~~~~~~P~~-----~~~p~vv~~HGgG~~~g~~~----~~~~~~~~la~~~g~~vv~~dyr~~ 127 (317)
T 3qh4_A 57 GVAVADDVVTGEAGRPVPVRIYRAAP-----TPAPVVVYCHAGGFALGNLD----TDHRQCLELARRARCAVVSVDYRLA 127 (317)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEECSC-----SSEEEEEEECCSTTTSCCTT----TTHHHHHHHHHHHTSEEEEECCCCT
T ss_pred cceEEEEEecCCCCCeEEEEEEecCC-----CCCcEEEEECCCcCccCChH----HHHHHHHHHHHHcCCEEEEecCCCC
Confidence 34568899999999899999999975 46799999999864322111 2333455666 56999999999987
Q ss_pred CCCchhhHHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCc
Q 008873 374 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPV 446 (550)
Q Consensus 374 g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~ 446 (550)
++... ...++|+.++++|+.++ ..+|++||+|+|+|+||++++.++...++ .++++++.+|+
T Consensus 128 p~~~~-----------p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~ 196 (317)
T 3qh4_A 128 PEHPY-----------PAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPV 196 (317)
T ss_dssp TTSCT-----------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCC
T ss_pred CCCCC-----------chHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECce
Confidence 65431 11278999999999886 45789999999999999999999886543 58999999999
Q ss_pred CCcccccch----------------hhhhccCCCCCCccccccCChhhhhhcCC--CcEEEEecCCCCCCChHHHHHHHH
Q 008873 447 TSWDGYDTF----------------YTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLIN 508 (550)
Q Consensus 447 ~~~~~~~~~----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~ 508 (550)
.+....... +...+++....+ ...++.. ...++ .|+||+||+.|..++ ++.++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~-~~~l~~lpP~li~~G~~D~~~~--~~~~~a~ 269 (317)
T 3qh4_A 197 LDDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTPS----PESVPGR-RGQLAGLPATLITCGEIDPFRD--EVLDYAQ 269 (317)
T ss_dssp CCSSCCHHHHHTTTCSSSCHHHHHHHHHHHHTTCCCC----TTTCGGG-CSCCTTCCCEEEEEEEESTTHH--HHHHHHH
T ss_pred ecCCCCcCHHHhcCCCCcCHHHHHHHHHHhcCCCCCC----cccCCCc-ccccCCCCceeEEecCcCCCch--hHHHHHH
Confidence 886511110 011122211110 1112221 12222 499999999999865 7889999
Q ss_pred HHHHcCCCeEEEEcCCCCCcCC----CCCcHHHHHHHHHHHHHHhC
Q 008873 509 ALVAARKPYEILIFPDERHMPR----RHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 509 ~l~~~~~~~~~~~~p~~~H~~~----~~~~~~~~~~~~~~fl~~~l 550 (550)
+|++.++++++++||+++|+|. .......+.+.+.+||+++|
T Consensus 270 ~l~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l 315 (317)
T 3qh4_A 270 RLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAF 315 (317)
T ss_dssp HHHHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863 23556788999999999874
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=197.59 Aligned_cols=232 Identities=17% Similarity=0.158 Sum_probs=164.6
Q ss_pred eEE-EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 299 DIV-QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 299 ~~~-~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
+.+ .+...+|..+.+.++.|.+ ++.|+||++||.+.... .|..+++.|+++||.|+++|+||+|.+.
T Consensus 35 ~~~~~~~~~dg~~l~~~~~~p~~-----~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S~ 102 (342)
T 3hju_A 35 QDLPHLVNADGQYLFCRYWKPTG-----TPKALIFVSHGAGEHSG-------RYEELARMLMGLDLLVFAHDHVGHGQSE 102 (342)
T ss_dssp TSSCEEECTTSCEEEEEEECCSS-----CCSEEEEEECCTTCCGG-------GGHHHHHHHHTTTEEEEEECCTTSTTSC
T ss_pred ccCceEEccCCeEEEEEEeCCCC-----CCCcEEEEECCCCcccc-------hHHHHHHHHHhCCCeEEEEcCCCCcCCC
Confidence 444 7888899999999998874 35699999999876543 3455688899999999999999999876
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-h-
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-F- 455 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~- 455 (550)
...... ..-....+|+.++++++..+ .+..+|+|+|||+||++++.++.++|++++++|+.+|......... .
T Consensus 103 ~~~~~~---~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 177 (342)
T 3hju_A 103 GERMVV---SDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTF 177 (342)
T ss_dssp SSTTCC---SCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHH
T ss_pred CcCCCc---CcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHH
Confidence 421100 00011267899999998877 3567899999999999999999999999999999998765421100 0
Q ss_pred ------hhhhcc------------------------CCCCCCcccc----------ccCChhhhhhcCCCcEEEEecCCC
Q 008873 456 ------YTEKYM------------------------GLPSEDPVGY----------EYSSVMHHVHKMKGKLLLVHGMID 495 (550)
Q Consensus 456 ------~~~~~~------------------------g~~~~~~~~~----------~~~~~~~~~~~i~~P~lii~G~~D 495 (550)
+....+ ..+....... ........+.++++|+|+++|++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D 257 (342)
T 3hju_A 178 KVLAAKVLNLVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSAD 257 (342)
T ss_dssp HHHHHHHHHHHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTC
T ss_pred HHHHHHHHHHhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcCEEEEEeCCC
Confidence 000000 0000000000 000112456788999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC--CcHHHHHHHHHHHHHHh
Q 008873 496 ENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERT 549 (550)
Q Consensus 496 ~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~--~~~~~~~~~~~~fl~~~ 549 (550)
..++++.+.++++.+. +.+++++++++++|.+... +....+...+++||+++
T Consensus 258 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~ 311 (342)
T 3hju_A 258 RLCDSKGAYLLMELAK--SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQR 311 (342)
T ss_dssp SSSCHHHHHHHHHHCC--CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHcC--CCCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhcc
Confidence 9999999998888763 2368999999999987432 23557788899999875
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-22 Score=187.64 Aligned_cols=225 Identities=13% Similarity=0.095 Sum_probs=157.7
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.....+.+.||..+.+.++.|... ++.|+||++||++........| .....+.|++. |.|+++|+||++.+.
T Consensus 3 ~~~~~~~~~dg~~l~~~~~~p~~~----~~~~~vv~~HG~~~~~~~~~~~---~~~~~~~l~~~-~~v~~~d~~~~~~~~ 74 (275)
T 3h04_A 3 EIKYKVITKDAFALPYTIIKAKNQ----PTKGVIVYIHGGGLMFGKANDL---SPQYIDILTEH-YDLIQLSYRLLPEVS 74 (275)
T ss_dssp CEEEEEECTTSCEEEEEEECCSSS----SCSEEEEEECCSTTTSCCTTCS---CHHHHHHHTTT-EEEEEECCCCTTTSC
T ss_pred ceEEEEecCCcEEEEEEEEccCCC----CCCCEEEEEECCcccCCchhhh---HHHHHHHHHhC-ceEEeeccccCCccc
Confidence 356778888999999999999753 4679999999987322111111 12356777777 999999999987653
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc----
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---- 453 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---- 453 (550)
... ..+|+.++++++.++ ++.++++|+||||||.+++.++.+ ++++++|+.+|+.+.....
T Consensus 75 ~~~-----------~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~ 139 (275)
T 3h04_A 75 LDC-----------IIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTT 139 (275)
T ss_dssp HHH-----------HHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSC
T ss_pred cch-----------hHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccc
Confidence 211 168899999999887 467899999999999999999998 7889999999987652110
Q ss_pred ------------chhhhhccCC-CCCCc---c-----------------------ccccC-ChhhhhhcCCCcEEEEecC
Q 008873 454 ------------TFYTEKYMGL-PSEDP---V-----------------------GYEYS-SVMHHVHKMKGKLLLVHGM 493 (550)
Q Consensus 454 ------------~~~~~~~~g~-~~~~~---~-----------------------~~~~~-~~~~~~~~i~~P~lii~G~ 493 (550)
.......... +.... . .+... .....+.+++ |+|+++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~ 218 (275)
T 3h04_A 140 NSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCN 218 (275)
T ss_dssp CHHHHHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEET
T ss_pred cchhhcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecC
Confidence 0000000000 00000 0 00000 0112236667 99999999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH--HHHHHHHHHHHHHhC
Q 008873 494 IDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR--IYMEERIWEFIERTL 550 (550)
Q Consensus 494 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~--~~~~~~~~~fl~~~l 550 (550)
.|..+|+..+.++++.+ .+.++.++|+++|.+...... .++.+.+.+||+++|
T Consensus 219 ~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l 273 (275)
T 3h04_A 219 GDYDVPVEESEHIMNHV----PHSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAIT 273 (275)
T ss_dssp TCSSSCTHHHHHHHTTC----SSEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHhc----CCceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHh
Confidence 99999999888887654 457899999999998554443 788999999999874
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=205.96 Aligned_cols=234 Identities=15% Similarity=0.147 Sum_probs=165.1
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
-...+.+.++. +|..+.++++.+.. ++.|+||++||.++... .| .......+.++||.|+++|+||+|
T Consensus 132 ~~~~~~~~i~~-~~~~l~~~~~~~~~-----~~~p~vv~~HG~~~~~~---~~---~~~~~~~~~~~g~~vi~~D~~G~G 199 (405)
T 3fnb_A 132 KIPLKSIEVPF-EGELLPGYAIISED-----KAQDTLIVVGGGDTSRE---DL---FYMLGYSGWEHDYNVLMVDLPGQG 199 (405)
T ss_dssp SCCCEEEEEEE-TTEEEEEEEECCSS-----SCCCEEEEECCSSCCHH---HH---HHHTHHHHHHTTCEEEEECCTTST
T ss_pred CCCcEEEEEeE-CCeEEEEEEEcCCC-----CCCCEEEEECCCCCCHH---HH---HHHHHHHHHhCCcEEEEEcCCCCc
Confidence 34578888887 67889999885432 45699999999765532 11 111233566899999999999999
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 454 (550)
.+..... ........|+.++++++..+. ++|+|+|||+||++++.++..+| +++++|+.+|+.++.....
T Consensus 200 ~s~~~~~-----~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~ 269 (405)
T 3fnb_A 200 KNPNQGL-----HFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFR 269 (405)
T ss_dssp TGGGGTC-----CCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHH
T ss_pred CCCCCCC-----CCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHH
Confidence 7743211 222344788889999986654 68999999999999999999888 7899999999987632211
Q ss_pred hhhhhccCCCC------------------------------CCc----cccccCChhhhhhcCCCcEEEEecCCCCCCCh
Q 008873 455 FYTEKYMGLPS------------------------------EDP----VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHF 500 (550)
Q Consensus 455 ~~~~~~~g~~~------------------------------~~~----~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~ 500 (550)
.........|. ... ..+....+...+.++++|+|+++|++|..+|+
T Consensus 270 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~ 349 (405)
T 3fnb_A 270 ISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELM 349 (405)
T ss_dssp HHCC------------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTSCHHHH
T ss_pred HhhhhhhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCCcCCCh
Confidence 00000000110 000 00011111122678899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCCCcC--CCCCcHHHHHHHHHHHHHHhC
Q 008873 501 RHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 501 ~~~~~~~~~l~~~~~~~~~~~~p~~~H~~--~~~~~~~~~~~~~~~fl~~~l 550 (550)
.++.++++++...+.++++++++++.|.. ...++...+.+.+.+||+++|
T Consensus 350 ~~~~~l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l 401 (405)
T 3fnb_A 350 RQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIF 401 (405)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHh
Confidence 99999999999988999999997666542 246778889999999999864
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=199.50 Aligned_cols=233 Identities=14% Similarity=0.041 Sum_probs=165.6
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.+.+.+...+|..+.+.+|.|.... +++|+||++|||+....... ...+......|+++||.|+++|+||+|++.
T Consensus 82 ~~~~~~~~~~g~~l~~~v~~p~~~~---~~~p~vv~iHGgg~~~g~~~--~~~~~~~~~~la~~g~~vv~~d~r~~gg~~ 156 (361)
T 1jkm_A 82 TSTETILGVDGNEITLHVFRPAGVE---GVLPGLVYTHGGGMTILTTD--NRVHRRWCTDLAAAGSVVVMVDFRNAWTAE 156 (361)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTCC---SCEEEEEEECCSTTTSSCSS--SHHHHHHHHHHHHTTCEEEEEECCCSEETT
T ss_pred eeeeeeecCCCCeEEEEEEeCCCCC---CCCeEEEEEcCCccccCCCc--ccchhHHHHHHHhCCCEEEEEecCCCCCCC
Confidence 4567788888878999999997642 37899999999863321111 002334577888899999999999997553
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcC---CCCCCceEEEEechhHHHHHHHHhh-----CCCeeEEEEEcCCcCCc
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQG---LAKVGHIGLYGWSYGGYLSAITLAR-----FPDVFQCAVSGAPVTSW 449 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~i~G~S~GG~~a~~~~~~-----~~~~~~~~v~~~~~~~~ 449 (550)
.. ........|+.++++|+.++. .+| +|+|+|+|+||.+++.++.. +|++++++|+.+|+.+.
T Consensus 157 ~~-------~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~~ 227 (361)
T 1jkm_A 157 GH-------HPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISG 227 (361)
T ss_dssp EE-------CCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCC
T ss_pred CC-------CCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcccc
Confidence 21 112234789999999998762 334 99999999999999999987 77789999999998876
Q ss_pred cc---------ccch----------------hhhhccCCCCCCccccccCChh----hhhhcCCCcEEEEecCCCCCCCh
Q 008873 450 DG---------YDTF----------------YTEKYMGLPSEDPVGYEYSSVM----HHVHKMKGKLLLVHGMIDENVHF 500 (550)
Q Consensus 450 ~~---------~~~~----------------~~~~~~g~~~~~~~~~~~~~~~----~~~~~i~~P~lii~G~~D~~v~~ 500 (550)
.. .... +...+.+...... ....++. ..+.++. |+||+||+.|..++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~l~~l~-P~Lii~G~~D~~~~- 303 (361)
T 1jkm_A 228 GYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAE--DPIAWPYFASEDELRGLP-PFVVAVNELDPLRD- 303 (361)
T ss_dssp CTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTT--CTTTCGGGCCHHHHTTCC-CEEEEEETTCTTHH-
T ss_pred ccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCC--CcccCccccChhhHcCCC-ceEEEEcCcCcchh-
Confidence 11 0000 0111111111100 1112232 3455666 99999999999887
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCCCcCC-C----CCcH-HHHHHHHHHHHHHh
Q 008873 501 RHTARLINALVAARKPYEILIFPDERHMPR-R----HRDR-IYMEERIWEFIERT 549 (550)
Q Consensus 501 ~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~-~----~~~~-~~~~~~~~~fl~~~ 549 (550)
++.++++++.+.+.+++++++|+++|.+. . .... ..+.+.+.+||+++
T Consensus 304 -~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 357 (361)
T 1jkm_A 304 -EGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 357 (361)
T ss_dssp -HHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999875 2 1333 67889999999875
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=190.32 Aligned_cols=201 Identities=14% Similarity=0.180 Sum_probs=154.6
Q ss_pred CCeEEEEEcC--CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 297 PPDIVQIQAN--DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 297 ~~~~~~~~~~--~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
..+.+.++.. ++. ..+.++.|... +.++.|+||++||.++... .|..+.+.|+++||.|+++|+||.|
T Consensus 24 ~~~~~~~~~~~~~~~-~~~~l~~p~~~--~~~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~g 93 (262)
T 1jfr_A 24 ATSQTSVSSLVASGF-GGGTIYYPTST--ADGTFGAVVISPGFTAYQS-------SIAWLGPRLASQGFVVFTIDTNTTL 93 (262)
T ss_dssp CEEEEEECTTTCSSS-CCEEEEEESCC--TTCCEEEEEEECCTTCCGG-------GTTTHHHHHHTTTCEEEEECCSSTT
T ss_pred CccceEecceeccCC-CceeEEecCCC--CCCCCCEEEEeCCcCCCch-------hHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 3456666654 332 24567777652 1257899999999766532 2344678899999999999999988
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHH----cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
.+... ...|+.++++++.+ ...++.++|+|+|||+||++++.++.++|+ ++++|+.+|...
T Consensus 94 ~~~~~------------~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~-- 158 (262)
T 1jfr_A 94 DQPDS------------RGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT-- 158 (262)
T ss_dssp CCHHH------------HHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS--
T ss_pred CCCch------------hHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc--
Confidence 65421 14678888999987 345678899999999999999999999988 789998877532
Q ss_pred cccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHH-HHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 451 GYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 451 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
...+.++++|+|+++|++|..+++.. +.++++.+. .+.+++++++++++|.+
T Consensus 159 --------------------------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~H~~ 211 (262)
T 1jfr_A 159 --------------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLP-GSLDKAYLELRGASHFT 211 (262)
T ss_dssp --------------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSC-TTSCEEEEEETTCCTTG
T ss_pred --------------------------cccccccCCCEEEEecCccccCCchhhHHHHHHHhh-cCCCceEEEeCCCCcCC
Confidence 12345678999999999999999998 999999883 35688999999999998
Q ss_pred CCCCcHHHHHHHHHHHHHHhC
Q 008873 530 RRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 530 ~~~~~~~~~~~~~~~fl~~~l 550 (550)
.. +....+.+.+.+||+++|
T Consensus 212 ~~-~~~~~~~~~i~~fl~~~l 231 (262)
T 1jfr_A 212 PN-TSDTTIAKYSISWLKRFI 231 (262)
T ss_dssp GG-SCCHHHHHHHHHHHHHHH
T ss_pred cc-cchHHHHHHHHHHHHHHh
Confidence 44 344678999999998764
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=186.75 Aligned_cols=220 Identities=13% Similarity=0.039 Sum_probs=155.1
Q ss_pred CCCCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccccccc---chhHhHHHHhC----CcEE
Q 008873 294 QLEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT---VDMRAQYLRSK----GILV 365 (550)
Q Consensus 294 ~~~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~---~~~~~~~l~~~----G~~v 365 (550)
...+.+.+.+.+. +|..+.+.+|.|.+... .+++|+||++||+++... .|... +....+.|+++ ||+|
T Consensus 28 ~~g~~~~~~~~s~~~~~~~~~~v~~P~~~~~-~~~~P~vv~lHG~g~~~~---~~~~~~~~~~~~~~~l~~~g~~~~~~v 103 (268)
T 1jjf_A 28 PRGQVVNISYFSTATNSTRPARVYLPPGYSK-DKKYSVLYLLHGIGGSEN---DWFEGGGRANVIADNLIAEGKIKPLII 103 (268)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEECTTCCT-TSCBCEEEEECCTTCCTT---TTTTTTTCHHHHHHHHHHTTSSCCCEE
T ss_pred CCceEEEEEEeccccCCceEEEEEeCCCCCC-CCCccEEEEECCCCCCcc---hhhhccccHHHHHHHHHHcCCCCCEEE
Confidence 3455677888765 57889999999987532 368999999999876532 33221 22335667665 5999
Q ss_pred EEECCCCCCCCc-hhhHHHHhhccCCCchHH-HHHHHHHHHHcCCC--CCCceEEEEechhHHHHHHHHhhCCCeeEEEE
Q 008873 366 WKLDNRGTARRG-LKFEASIKHNCGRIDAED-QLTGAEWLIKQGLA--KVGHIGLYGWSYGGYLSAITLARFPDVFQCAV 441 (550)
Q Consensus 366 v~~d~rG~g~~~-~~~~~~~~~~~~~~~~~D-~~~~~~~l~~~~~~--d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v 441 (550)
+++|+++.+... ..+. .+ .++ +.++++++.++..+ |+++|+|+|+|+||++++.++.++|++|++++
T Consensus 104 v~~d~~~~~~~~~~~~~-----~~----~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v 174 (268)
T 1jjf_A 104 VTPNTNAAGPGIADGYE-----NF----TKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIG 174 (268)
T ss_dssp EEECCCCCCTTCSCHHH-----HH----HHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEE
T ss_pred EEeCCCCCCccccccHH-----HH----HHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheE
Confidence 999999875321 1111 10 233 44566677665444 88999999999999999999999999999999
Q ss_pred EcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCC-cEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 442 SGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG-KLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~-P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
+.+|..++..... .+... ......+. |+|++||+.|..+|. +.+++++|++.+.++++.
T Consensus 175 ~~s~~~~~~~~~~-----~~~~~-------------~~~~~~~~pp~li~~G~~D~~v~~--~~~~~~~l~~~g~~~~~~ 234 (268)
T 1jjf_A 175 PISAAPNTYPNER-----LFPDG-------------GKAAREKLKLLFIACGTNDSLIGF--GQRVHEYCVANNINHVYW 234 (268)
T ss_dssp EESCCTTSCCHHH-----HCTTT-------------THHHHHHCSEEEEEEETTCTTHHH--HHHHHHHHHHTTCCCEEE
T ss_pred EeCCCCCCCchhh-----hcCcc-------------hhhhhhcCceEEEEecCCCCCccH--HHHHHHHHHHCCCceEEE
Confidence 9999766432111 11100 00112234 499999999999874 678999999999999999
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++|+++|.+.. ....+..+++||.++
T Consensus 235 ~~~g~~H~~~~---~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 235 LIQGGGHDFNV---WKPGLWNFLQMADEA 260 (268)
T ss_dssp EETTCCSSHHH---HHHHHHHHHHHHHHH
T ss_pred EcCCCCcCHhH---HHHHHHHHHHHHHhc
Confidence 99999998732 345567788998764
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-23 Score=196.26 Aligned_cols=190 Identities=16% Similarity=0.209 Sum_probs=151.3
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.+|.. .+.++.|... .+.|+||++||+++... .|..+.+.|+++||.|+++|+||.|.+....
T Consensus 79 ~~g~~-~~~~~~p~~~----~~~p~vv~~HG~~~~~~-------~~~~~~~~la~~G~~vv~~d~~g~g~s~~~~----- 141 (306)
T 3vis_A 79 ADGFG-GGTIYYPREN----NTYGAIAISPGYTGTQS-------SIAWLGERIASHGFVVIAIDTNTTLDQPDSR----- 141 (306)
T ss_dssp CSSSC-CEEEEEESSC----SCEEEEEEECCTTCCHH-------HHHHHHHHHHTTTEEEEEECCSSTTCCHHHH-----
T ss_pred cCCCc-ceEEEeeCCC----CCCCEEEEeCCCcCCHH-------HHHHHHHHHHhCCCEEEEecCCCCCCCcchH-----
Confidence 34543 3566777653 36899999999766532 3455688899999999999999988764311
Q ss_pred hccCCCchHHHHHHHHHHHHc------CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhh
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQ------GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEK 459 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~------~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 459 (550)
..|+.++++++.+. ..+|.++|+|+|||+||++++.++.++|+ ++++++.+|...
T Consensus 142 -------~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~----------- 202 (306)
T 3vis_A 142 -------ARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL----------- 202 (306)
T ss_dssp -------HHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-----------
T ss_pred -------HHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC-----------
Confidence 36788999999887 77889999999999999999999999988 788888877532
Q ss_pred ccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChH-HHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHH
Q 008873 460 YMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR-HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538 (550)
Q Consensus 460 ~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~ 538 (550)
...+.++++|+|+++|++|..+|+. ++..+++++...+ +++++++++++|.+.. +....+
T Consensus 203 -----------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~-~~~~~~ 263 (306)
T 3vis_A 203 -----------------NKSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELDGASHFAPN-ITNKTI 263 (306)
T ss_dssp -----------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGG-SCCHHH
T ss_pred -----------------ccccccCCCCEEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEECCCCccchh-hchhHH
Confidence 1234567799999999999999998 6999998886655 8999999999999744 334678
Q ss_pred HHHHHHHHHHhC
Q 008873 539 EERIWEFIERTL 550 (550)
Q Consensus 539 ~~~~~~fl~~~l 550 (550)
.+.+.+||+++|
T Consensus 264 ~~~i~~fl~~~l 275 (306)
T 3vis_A 264 GMYSVAWLKRFV 275 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 899999998864
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=190.47 Aligned_cols=237 Identities=14% Similarity=0.009 Sum_probs=161.2
Q ss_pred CCeEEEEEcC-CCcEEEEEEEcCCCCC---CCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCC
Q 008873 297 PPDIVQIQAN-DGTVLYGALYKPDESR---YGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 372 (550)
Q Consensus 297 ~~~~~~~~~~-~g~~l~~~~~~P~~~~---~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG 372 (550)
..+.+++.+. .|..+.+.+|.|.+.. ..++++|+||++||+++... .|... .....++++.|++|+++|+++
T Consensus 6 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~---~~~~~-~~~~~~~~~~~~~v~~~~~~~ 81 (263)
T 2uz0_A 6 AVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNHN---SWLKR-TNVERLLRGTNLIVVMPNTSN 81 (263)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCTT---HHHHH-SCHHHHTTTCCCEEEECCCTT
T ss_pred eEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCHH---HHHhc-cCHHHHHhcCCeEEEEECCCC
Confidence 3466777654 5788999999998751 12367899999999876532 22210 012344556899999999998
Q ss_pred CCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 373 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
++............. ..+|+...++.+..+..+|.++|+|+|||+||++++.++. +|++|+++++.+|..++...
T Consensus 82 ~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~ 156 (263)
T 2uz0_A 82 GWYTDTQYGFDYYTA----LAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNF 156 (263)
T ss_dssp STTSBCTTSCBHHHH----HHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSC
T ss_pred CccccCCCcccHHHH----HHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhc
Confidence 765432110000000 1345555555443323468899999999999999999999 89999999999998876543
Q ss_pred cc--------hhhhhccCCCCCCccccccCChhhhhhcCC--CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEc
Q 008873 453 DT--------FYTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522 (550)
Q Consensus 453 ~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 522 (550)
.. .+...+++.+. ...+...++...+.+++ +|+|++||+.|..++ .+.++++++++.+.++++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~l~~~g~~~~~~~~ 232 (263)
T 2uz0_A 157 SPESQNLGSPAYWRGVFGEIR--DWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLYE--ANNLAVKNLKKLGFDVTYSHS 232 (263)
T ss_dssp CGGGTTCSCHHHHHHHHCCCS--CTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTHH--HHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccccccchhHHHHcCChh--hhccccCCHHHHHHhccCCCeEEEEeCCCchhhH--HHHHHHHHHHHCCCCeEEEEC
Confidence 21 01112223221 23455667777788776 799999999999874 578899999999999999999
Q ss_pred CCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 523 PDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 523 p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
|+ +|.+.. .....+.+++||.++|
T Consensus 233 ~g-~H~~~~---~~~~~~~~~~~l~~~l 256 (263)
T 2uz0_A 233 AG-THEWYY---WEKQLEVFLTTLPIDF 256 (263)
T ss_dssp SC-CSSHHH---HHHHHHHHHHHSSSCC
T ss_pred CC-CcCHHH---HHHHHHHHHHHHHhhc
Confidence 99 998632 3466788999987764
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=216.00 Aligned_cols=234 Identities=14% Similarity=0.151 Sum_probs=165.6
Q ss_pred EcCCCcE--EEEEEEcCCCCCCCCCCceEEEEEcCCCCcee----------e----------------------------
Q 008873 304 QANDGTV--LYGALYKPDESRYGPPPYKTLISVYGGPCVQL----------V---------------------------- 343 (550)
Q Consensus 304 ~~~~g~~--l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~----------~---------------------------- 343 (550)
+..||.. |.+.+|+|.+. +++|+||..||...... +
T Consensus 179 ~~~DG~~d~L~a~l~~P~~~----~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 254 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKST----EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKE 254 (763)
T ss_dssp TTCSSSCCEEEEEEEECCCS----SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCCC----CcccEEEecCCcCCCCcccccccccccccccccccCcccccccccccccccccccc
Confidence 3579988 99999999863 68999998877432100 0
Q ss_pred -------ccccccc-chhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc---------
Q 008873 344 -------CDSWINT-VDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ--------- 406 (550)
Q Consensus 344 -------~~~~~~~-~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--------- 406 (550)
...|... .....++++++||+|+++|+||+|+++..+. .++..+.+|+.++++||.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~~-----~~~~~e~~D~~a~IdwL~~~~~~~~d~~~ 329 (763)
T 1lns_A 255 LPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQT-----SGDYQQIYSMTAVIDWLNGRARAYTSRKK 329 (763)
T ss_dssp CCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCC-----TTSHHHHHHHHHHHHHHTTSSCEESSTTC
T ss_pred ccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcCC-----CCCHHHHHHHHHHHHHHhhcccccccccc
Confidence 0011000 0113588999999999999999998875432 12223578999999999843
Q ss_pred ------CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-c--------hhhh------------h
Q 008873 407 ------GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T--------FYTE------------K 459 (550)
Q Consensus 407 ------~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~--------~~~~------------~ 459 (550)
++ +.+||+++|+||||++++.+|+++|+.++|+|+.+|+.++..+. . .+.. +
T Consensus 330 ~~~v~q~~-~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~ 408 (763)
T 1lns_A 330 THEIKASW-ANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSR 408 (763)
T ss_dssp CCEECCTT-EEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGG
T ss_pred cccccccC-CCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhh
Confidence 32 45799999999999999999999999999999999987543210 0 0000 0
Q ss_pred --------------------c---c--CCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 460 --------------------Y---M--GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 460 --------------------~---~--g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
+ + ..+. ..+.|...++..++++|++|+|++||..|..+|+.++.++++++.. +
T Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp~~~a~~l~~al~~-~ 486 (763)
T 1lns_A 409 NLDGADFLKGNAEYEKRLAEMTAALDRKSGD-YNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-G 486 (763)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHCTTTCC-CCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-T
T ss_pred hcCcchhhhHHHHHHHHHHHHHhhhhhccCc-hhHHhhccChhhHhhcCCCCEEEEEECCCCCCChHHHHHHHHhhcc-C
Confidence 0 0 0111 1123445677788999999999999999999999999999999876 6
Q ss_pred CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 515 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.+..+++ ++++|..........+.+.+.+||+++|
T Consensus 487 ~~~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~L 521 (763)
T 1lns_A 487 HAKHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKL 521 (763)
T ss_dssp CCEEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEE-eCCcccCccccchHHHHHHHHHHHHHHh
Confidence 6666655 5678986332233456789999999875
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=188.41 Aligned_cols=202 Identities=16% Similarity=0.088 Sum_probs=151.2
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.+...++..++..+.+.+|.|.+ ++.|+||++|||+....... .|..+++.|+++||.|+++|+||++...
T Consensus 38 ~~~~~i~~~~~~~~~~~~~~p~~-----~~~p~vv~~HGgg~~~~~~~----~~~~~~~~l~~~G~~v~~~d~~~~~~~~ 108 (262)
T 2pbl_A 38 RARLNLSYGEGDRHKFDLFLPEG-----TPVGLFVFVHGGYWMAFDKS----SWSHLAVGALSKGWAVAMPSYELCPEVR 108 (262)
T ss_dssp GEEEEEESSSSTTCEEEEECCSS-----SCSEEEEEECCSTTTSCCGG----GCGGGGHHHHHTTEEEEEECCCCTTTSC
T ss_pred CCccccccCCCCCceEEEEccCC-----CCCCEEEEEcCcccccCChH----HHHHHHHHHHhCCCEEEEeCCCCCCCCC
Confidence 45556666667677788888865 35699999999752211112 2344678899999999999999987543
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC------CCeeEEEEEcCCcCCccc
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF------PDVFQCAVSGAPVTSWDG 451 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~------~~~~~~~v~~~~~~~~~~ 451 (550)
. . .. .+|+.++++++..+.. ++|+|+||||||++++.++.++ +++++++|+.+|+.+...
T Consensus 109 ~--~-----~~----~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~ 174 (262)
T 2pbl_A 109 I--S-----EI----TQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRP 174 (262)
T ss_dssp H--H-----HH----HHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGG
T ss_pred h--H-----HH----HHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchH
Confidence 1 1 11 6889999999988753 7899999999999999999887 889999999999887543
Q ss_pred ccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC
Q 008873 452 YDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530 (550)
Q Consensus 452 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~ 530 (550)
....+....+. ...+.+...++.....++++|+|++||++|..+++.++.++++++. ++++++|+++|.+.
T Consensus 175 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~H~~~ 245 (262)
T 2pbl_A 175 LLRTSMNEKFK---MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHHFNV 245 (262)
T ss_dssp GGGSTTHHHHC---CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCTTTT
T ss_pred HHhhhhhhhhC---CCHHHHHhcCcccccCCCCCCEEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeCCCCcchH
Confidence 32211111111 1233445566667777889999999999999999999999999884 89999999999863
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=183.54 Aligned_cols=188 Identities=11% Similarity=0.082 Sum_probs=132.0
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
+..|+||++||.+.... .+..+++.|...|+.|++||.+|.+.+...+......+ ...+++..+.++.+.+
T Consensus 20 ~a~~~Vv~lHG~G~~~~-------~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~--~~~~~~~~~~i~~~~~ 90 (210)
T 4h0c_A 20 RAKKAVVMLHGRGGTAA-------DIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQN--QPALDSALALVGEVVA 90 (210)
T ss_dssp TCSEEEEEECCTTCCHH-------HHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGG--TTHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHH-------HHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcccc--hHHHHHHHHHHHHHHH
Confidence 45689999999544321 12334667778899999999998876543332211111 1123344444444332
Q ss_pred ---cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhc
Q 008873 406 ---QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHK 482 (550)
Q Consensus 406 ---~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 482 (550)
...+|++||+|+|+|+||++++.++.++|++|+++++.++..... ....... ....
T Consensus 91 ~~~~~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~--------------~~~~~~~-------~~~~ 149 (210)
T 4h0c_A 91 EIEAQGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQ--------------ELAIGNY-------KGDF 149 (210)
T ss_dssp HHHHTTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSS--------------SCCGGGC-------CBCC
T ss_pred HHHHhCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCCh--------------hhhhhhh-------hhhc
Confidence 245899999999999999999999999999999999988742210 0000000 0111
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 483 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 483 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.++|+|++||++|++||++.+.+++++|++.|.++++++||+.+|.+.. +..+.+.+||.+
T Consensus 150 ~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~~-----~el~~i~~wL~k 210 (210)
T 4h0c_A 150 KQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTISG-----DEIQLVNNTILK 210 (210)
T ss_dssp TTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCCSSCCH-----HHHHHHHHTTTC
T ss_pred cCCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCcCH-----HHHHHHHHHHcC
Confidence 2479999999999999999999999999999999999999999998732 335678888753
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=187.43 Aligned_cols=230 Identities=17% Similarity=0.154 Sum_probs=162.3
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
.+...+|..+.+.++.|.+ ++.|+||++||.+.... .|..+.+.|+++||.|+++|+||+|.+.....
T Consensus 21 ~~~~~~g~~l~~~~~~~~~-----~~~~~vv~~hG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~ 88 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG-----TPKALIFVSHGAGEHSG-------RYEELARMLMGLDLLVFAHDHVGHGQSEGERM 88 (303)
T ss_dssp EEECTTSCEEEEEEECCSS-----CCSEEEEEECCTTCCGG-------GGHHHHHHHHHTTEEEEEECCTTSTTSCSSTT
T ss_pred eEecCCCeEEEEEEeccCC-----CCCeEEEEECCCCchhh-------HHHHHHHHHHhCCCcEEEeCCCCCCCCCCCCC
Confidence 6788899999999998875 35699999999766533 34556888999999999999999998763211
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-------
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT------- 454 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 454 (550)
.. ..-....+|+.++++++..+. +..+++++|||+||.+++.++.++|++++++|+.+|.........
T Consensus 89 ~~---~~~~~~~~d~~~~l~~l~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 163 (303)
T 3pe6_A 89 VV---SDFHVFVRDVLQHVDSMQKDY--PGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLA 163 (303)
T ss_dssp CC---SSTHHHHHHHHHHHHHHHHHS--TTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHHHhhcc--CCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHH
Confidence 00 000112678888888887763 456899999999999999999999999999999998765421100
Q ss_pred -hhhhhcc------------------------CCCCCCccc---------cc-cCChhhhhhcCCCcEEEEecCCCCCCC
Q 008873 455 -FYTEKYM------------------------GLPSEDPVG---------YE-YSSVMHHVHKMKGKLLLVHGMIDENVH 499 (550)
Q Consensus 455 -~~~~~~~------------------------g~~~~~~~~---------~~-~~~~~~~~~~i~~P~lii~G~~D~~v~ 499 (550)
....... ..+...... +. .......+.++++|+|+++|++|..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~ 243 (303)
T 3pe6_A 164 AKVLNSVLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCD 243 (303)
T ss_dssp HHHHHTTCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSBC
T ss_pred HHHHHHhcccccCCccchhhhhcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCC
Confidence 0000000 000000000 00 001124567889999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC--CcHHHHHHHHHHHHHHhC
Q 008873 500 FRHTARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERTL 550 (550)
Q Consensus 500 ~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~--~~~~~~~~~~~~fl~~~l 550 (550)
+..+.++.+.+. +..++++++++++|.+... +......+.+++||++++
T Consensus 244 ~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~ 294 (303)
T 3pe6_A 244 SKGAYLLMELAK--SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 294 (303)
T ss_dssp HHHHHHHHHHCC--CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhcc--cCCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccC
Confidence 999988888763 2368999999999987432 235577888999998764
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-22 Score=193.03 Aligned_cols=216 Identities=17% Similarity=0.128 Sum_probs=150.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCchhhHHHHh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
+|..+ +.|.+.. .+.|+||++|||+....... .+..+...|+. .||.|+++|||+++....
T Consensus 66 ~g~~~----~~p~~~~---~~~~~vv~~HGgg~~~g~~~----~~~~~~~~la~~~g~~v~~~dyr~~~~~~~------- 127 (322)
T 3k6k_A 66 GGVPC----IRQATDG---AGAAHILYFHGGGYISGSPS----THLVLTTQLAKQSSATLWSLDYRLAPENPF------- 127 (322)
T ss_dssp TTEEE----EEEECTT---CCSCEEEEECCSTTTSCCHH----HHHHHHHHHHHHHTCEEEEECCCCTTTSCT-------
T ss_pred CCEeE----EecCCCC---CCCeEEEEEcCCcccCCChH----HHHHHHHHHHHhcCCEEEEeeCCCCCCCCC-------
Confidence 66555 4555431 23355999999864322111 22334566665 599999999998875431
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCe----eEEEEEcCCcCCcccccchh-----
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV----FQCAVSGAPVTSWDGYDTFY----- 456 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~----- 456 (550)
...++|+.++++|+.++ .+|+++|+|+|+|+||.+++.++.+.++. ++++++.+|+.++......+
T Consensus 128 ----~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~ 202 (322)
T 3k6k_A 128 ----PAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRWSNSNLAD 202 (322)
T ss_dssp ----THHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCSHHHHHTGG
T ss_pred ----chHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCccchhhccC
Confidence 12278999999999988 56889999999999999999999876554 89999999998865322111
Q ss_pred -------------hhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcC
Q 008873 457 -------------TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 523 (550)
Q Consensus 457 -------------~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p 523 (550)
...+++... ......+|+...-+..+|+||+||+.|.. ..++.+++++|++.|+++++++||
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~sp~~~~~~~~pP~li~~G~~D~~--~~~~~~~~~~l~~~g~~~~l~~~~ 277 (322)
T 3k6k_A 203 RDFLAEPDTLGEMSELYVGGED---RKNPLISPVYADLSGLPEMLIHVGSEEAL--LSDSTTLAERAGAAGVSVELKIWP 277 (322)
T ss_dssp GCSSSCHHHHHHHHHHHHTTSC---TTCTTTCGGGSCCTTCCCEEEEEESSCTT--HHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CCCcCCHHHHHHHHHHhcCCCC---CCCCcCCcccccccCCCcEEEEECCcCcc--HHHHHHHHHHHHHCCCCEEEEEEC
Confidence 111211110 00112234333223336999999999987 568899999999999999999999
Q ss_pred CCCCcCCC----CCcHHHHHHHHHHHHHHhC
Q 008873 524 DERHMPRR----HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 524 ~~~H~~~~----~~~~~~~~~~~~~fl~~~l 550 (550)
+++|.+.. .......++.+.+||+++|
T Consensus 278 g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (322)
T 3k6k_A 278 DMPHVFQMYGKFVNAADISIKEICHWISARI 308 (322)
T ss_dssp TCCTTGGGGTTTCHHHHHHHHHHHHHHHTTC
T ss_pred CCccccccccccChHHHHHHHHHHHHHHHHH
Confidence 99998743 2446788999999999875
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=190.30 Aligned_cols=228 Identities=18% Similarity=0.198 Sum_probs=155.2
Q ss_pred eEEEE-EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 299 DIVQI-QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 299 ~~~~~-~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
+.+.+ .+.+|..+.+..+.+.. .+.|+||++||+++... .| .+..+...++++||.|+++|+||+|.+.
T Consensus 12 ~~~~~~~~~~g~~l~~~~~~~~~-----~~~~~vv~~HG~~~~~~---~~--~~~~~~~~l~~~g~~v~~~d~~G~G~s~ 81 (270)
T 3llc_A 12 HAITVGQGSDARSIAALVRAPAQ-----DERPTCIWLGGYRSDMT---GT--KALEMDDLAASLGVGAIRFDYSGHGASG 81 (270)
T ss_dssp EEEEESSGGGCEEEEEEEECCSS-----TTSCEEEEECCTTCCTT---SH--HHHHHHHHHHHHTCEEEEECCTTSTTCC
T ss_pred ceEEEeeccCcceEEEEeccCCC-----CCCCeEEEECCCccccc---cc--hHHHHHHHHHhCCCcEEEeccccCCCCC
Confidence 34444 45688899888777653 23589999999765422 11 1223567788899999999999999876
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh---CC---CeeEEEEEcCCcCCccc
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR---FP---DVFQCAVSGAPVTSWDG 451 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~---~~---~~~~~~v~~~~~~~~~~ 451 (550)
.........++ .+|+.++++++ ..++++|+|||+||.+++.++.+ +| ++++++|+.+|..++..
T Consensus 82 ~~~~~~~~~~~----~~d~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~ 151 (270)
T 3llc_A 82 GAFRDGTISRW----LEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTS 151 (270)
T ss_dssp SCGGGCCHHHH----HHHHHHHHHHH------CCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHH
T ss_pred CccccccHHHH----HHHHHHHHHHh------ccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchh
Confidence 54322111111 45555555555 25789999999999999999999 99 99999999999876432
Q ss_pred ------ccchhhhh-----ccCCC--C-CCc--------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHH
Q 008873 452 ------YDTFYTEK-----YMGLP--S-EDP--------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINA 509 (550)
Q Consensus 452 ------~~~~~~~~-----~~g~~--~-~~~--------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 509 (550)
+....... ....+ . ... ..+........+.++++|+|+++|++|..+|++.+.++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~~~~~~~~~~~ 231 (270)
T 3llc_A 152 DLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEH 231 (270)
T ss_dssp HTTGGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSCHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCCHHHHHHHHHh
Confidence 10000000 00000 0 000 01111222345677889999999999999999999888876
Q ss_pred HHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 510 LVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 510 l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+. +.+++++++++++|.+...+....+.+.+.+||++
T Consensus 232 ~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 232 LP--ADDVVLTLVRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp SC--SSSEEEEEETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred cC--CCCeeEEEeCCCcccccccccHHHHHHHHHHHhcC
Confidence 62 23589999999999876667778888999999875
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=191.42 Aligned_cols=240 Identities=16% Similarity=0.150 Sum_probs=163.0
Q ss_pred CeEEEEEc-CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCC--CCC
Q 008873 298 PDIVQIQA-NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR--GTA 374 (550)
Q Consensus 298 ~~~~~~~~-~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~r--G~g 374 (550)
.+.+++.+ ..|..+.+.+|.|++.. .+++|+||++||+++... .|.. .....+++++.|++|+++|.+ |.+
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~--~~~~p~vv~lHG~~~~~~---~~~~-~~~~~~~~~~~g~~vv~~d~~~rg~~ 95 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE--NRPLGVIYWLSGLTCTEQ---NFIT-KSGFQRYAAEHQVIVVAPDTSPRGEQ 95 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT--CCCEEEEEEECCTTCCSH---HHHH-HSCTHHHHHHHTCEEEEECSSCCSTT
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC--CCCCCEEEEEcCCCCCcc---chhh-cccHHHHHhhCCeEEEEecccccccc
Confidence 34455554 46788999999998752 368999999999876542 2311 112356777889999999964 332
Q ss_pred CCc---------hhhH-HHHhhcc-CCCchHHH-H-HHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEE
Q 008873 375 RRG---------LKFE-ASIKHNC-GRIDAEDQ-L-TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV 441 (550)
Q Consensus 375 ~~~---------~~~~-~~~~~~~-~~~~~~D~-~-~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v 441 (550)
..+ ..+. ......+ +.....+. . +.+.++.+.. .+.+|++|+|+||||++++.++.++|++|++++
T Consensus 96 ~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~ 174 (283)
T 4b6g_A 96 VPNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKHF-PTNGKRSIMGHSMGGHGALVLALRNQERYQSVS 174 (283)
T ss_dssp SCCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHS-CEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEE
T ss_pred ccccccccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHhC-CCCCCeEEEEEChhHHHHHHHHHhCCccceeEE
Confidence 111 1100 0000000 00111222 2 3344444442 256899999999999999999999999999999
Q ss_pred EcCCcCCccccc--chhhhhccCCCCCCccccccCChhhhhhcCC--CcEEEEecCCCCCCChH-HHHHHHHHHHHcCCC
Q 008873 442 SGAPVTSWDGYD--TFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK--GKLLLVHGMIDENVHFR-HTARLINALVAARKP 516 (550)
Q Consensus 442 ~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~--~P~lii~G~~D~~v~~~-~~~~~~~~l~~~~~~ 516 (550)
+.+|+.+..... ......+++. ....+...++...+++++ +|+||+||+.|..++.+ ++.+++++|++.+++
T Consensus 175 ~~s~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~g~~ 251 (283)
T 4b6g_A 175 AFSPILSPSLVPWGEKAFTAYLGK---DREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAANQP 251 (283)
T ss_dssp EESCCCCGGGSHHHHHHHHHHHCS---CGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHHTCC
T ss_pred EECCccccccCcchhhhHHhhcCC---chHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHHHcCCC
Confidence 999988754321 1112233332 344566677777777765 49999999999998863 389999999999999
Q ss_pred eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 517 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+++.++|+++|.+. .........++|+.++|
T Consensus 252 ~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l 282 (283)
T 4b6g_A 252 VDVRFHKGYDHSYY---FIASFIGEHIAYHAAFL 282 (283)
T ss_dssp CEEEEETTCCSSHH---HHHHHHHHHHHHHHTTC
T ss_pred ceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhc
Confidence 99999999999873 24556788899998876
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=184.92 Aligned_cols=204 Identities=18% Similarity=0.202 Sum_probs=147.2
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|+||++||.++... .|..+++.|+++||.|+++|+||+|.+...........+ .+|+.++++++.++
T Consensus 40 ~~~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~~~~~~----~~d~~~~i~~l~~~- 107 (270)
T 3rm3_A 40 PVGVLLVHGFTGTPH-------SMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHDW----VASVEEGYGWLKQR- 107 (270)
T ss_dssp SEEEEEECCTTCCGG-------GTHHHHHHHHHTTCEEEECCCTTCSSCHHHHHTCCHHHH----HHHHHHHHHHHHTT-
T ss_pred CeEEEEECCCCCChh-------HHHHHHHHHHHCCCEEEEeCCCCCCCCccccccCCHHHH----HHHHHHHHHHHHhh-
Confidence 489999999766533 245568889999999999999999988653322222222 67888888888765
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh-----hhcc---CC----CCCCccccccC-
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT-----EKYM---GL----PSEDPVGYEYS- 474 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~---g~----~~~~~~~~~~~- 474 (550)
.++++|+|||+||++++.++.++|+ ++++|+.+|..+......... ..++ .. +......|...
T Consensus 108 ---~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (270)
T 3rm3_A 108 ---CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTP 183 (270)
T ss_dssp ---CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEEE
T ss_pred ---CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhcccccC
Confidence 5789999999999999999999999 999999998765432111000 0000 00 00000111110
Q ss_pred ------------ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHH
Q 008873 475 ------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 542 (550)
Q Consensus 475 ------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~ 542 (550)
.....+.++++|+|+++|++|..+|+..+.++++.+. +.++++.++|+++|.+........+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~i 261 (270)
T 3rm3_A 184 TASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGIS--STEKEIVRLRNSYHVATLDYDQPMIIERS 261 (270)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSC--CSSEEEEEESSCCSCGGGSTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcC--CCcceEEEeCCCCcccccCccHHHHHHHH
Confidence 1223567789999999999999999999998888763 34679999999999986555567899999
Q ss_pred HHHHHHh
Q 008873 543 WEFIERT 549 (550)
Q Consensus 543 ~~fl~~~ 549 (550)
.+||+++
T Consensus 262 ~~fl~~~ 268 (270)
T 3rm3_A 262 LEFFAKH 268 (270)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999876
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=180.43 Aligned_cols=194 Identities=18% Similarity=0.068 Sum_probs=141.2
Q ss_pred EEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEE-------------------CCCCCCC
Q 008873 315 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL-------------------DNRGTAR 375 (550)
Q Consensus 315 ~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~-------------------d~rG~g~ 375 (550)
++.|+.. ++.|+||++||.++... .|....+.|+++||.|+++ |++|...
T Consensus 14 ~~~p~~~----~~~~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~ 82 (232)
T 1fj2_A 14 AIVPAAR----KATAAVIFLHGLGDTGH-------GWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSP 82 (232)
T ss_dssp EEECCSS----CCSEEEEEECCSSSCHH-------HHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCST
T ss_pred cccCCCC----CCCceEEEEecCCCccc-------hHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCc
Confidence 4555542 46799999999776532 2333456677789999998 5555411
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF 455 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 455 (550)
......... .. ..+|+.++++++.+ ..+|.++++|+|||+||++++.++.++|++++++++.+|..+....
T Consensus 83 ~~~~~~~~~-~~----~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~--- 153 (232)
T 1fj2_A 83 DSQEDESGI-KQ----AAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRAS--- 153 (232)
T ss_dssp TCCBCHHHH-HH----HHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGG---
T ss_pred ccccccHHH-HH----HHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCcc---
Confidence 111111111 11 15677777777776 5578899999999999999999999999999999999987543210
Q ss_pred hhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCC--eEEEEcCCCCCcCCCCC
Q 008873 456 YTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP--YEILIFPDERHMPRRHR 533 (550)
Q Consensus 456 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~--~~~~~~p~~~H~~~~~~ 533 (550)
. +. ......++++|+|+++|++|..+|++.+.++++.+++.+.+ ++++++++++|.+.
T Consensus 154 ----~---~~----------~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~H~~~--- 213 (232)
T 1fj2_A 154 ----F---PQ----------GPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC--- 213 (232)
T ss_dssp ----S---CS----------SCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC---
T ss_pred ----c---cc----------cccccccCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCcccC---
Confidence 0 00 01234567899999999999999999999999999988854 99999999999982
Q ss_pred cHHHHHHHHHHHHHHhC
Q 008873 534 DRIYMEERIWEFIERTL 550 (550)
Q Consensus 534 ~~~~~~~~~~~fl~~~l 550 (550)
.+..+.+.+||+++|
T Consensus 214 --~~~~~~i~~~l~~~l 228 (232)
T 1fj2_A 214 --QQEMMDVKQFIDKLL 228 (232)
T ss_dssp --HHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 234588999999875
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-21 Score=170.87 Aligned_cols=196 Identities=17% Similarity=0.146 Sum_probs=151.9
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchh--HhHHHHhCCcEEEEECCCCCCCC
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM--RAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~--~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+...++. +|.++++++|.|.+ +.|+||++||+++... .+.. +.+.|+++||.|+++|+||.|.+
T Consensus 5 ~~~~~~~-~g~~l~~~~~~~~~------~~~~vv~~hG~~~~~~-------~~~~~~~~~~l~~~G~~v~~~d~~g~g~s 70 (207)
T 3bdi_A 5 QEEFIDV-NGTRVFQRKMVTDS------NRRSIALFHGYSFTSM-------DWDKADLFNNYSKIGYNVYAPDYPGFGRS 70 (207)
T ss_dssp EEEEEEE-TTEEEEEEEECCTT------CCEEEEEECCTTCCGG-------GGGGGTHHHHHHTTTEEEEEECCTTSTTS
T ss_pred eeEEEee-CCcEEEEEEEeccC------CCCeEEEECCCCCCcc-------ccchHHHHHHHHhCCCeEEEEcCCccccc
Confidence 4444444 88899999999865 3489999999876543 2344 57889999999999999999876
Q ss_pred ---chhhHHHHhhccCCC-chHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 377 ---GLKFEASIKHNCGRI-DAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 377 ---~~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
.... ... ..+++.+.+..+.++- +.++++++|||+||.+++.++.++|++++++++.+|..... +
T Consensus 71 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~-~ 139 (207)
T 3bdi_A 71 ASSEKYG--------IDRGDLKHAAEFIRDYLKAN--GVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVES-L 139 (207)
T ss_dssp CCCTTTC--------CTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCGG-G
T ss_pred CcccCCC--------CCcchHHHHHHHHHHHHHHc--CCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccccc-h
Confidence 3211 122 4677777777776653 45699999999999999999999999999999998862211 0
Q ss_pred cchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC
Q 008873 453 DTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 532 (550)
Q Consensus 453 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~ 532 (550)
...+.++++|+|+++|++|..++++...++.+.+ .++++.++++++|.+..
T Consensus 140 ------------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~H~~~~- 190 (207)
T 3bdi_A 140 ------------------------KGDMKKIRQKTLLVWGSKDHVVPIALSKEYASII----SGSRLEIVEGSGHPVYI- 190 (207)
T ss_dssp ------------------------HHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHS----TTCEEEEETTCCSCHHH-
T ss_pred ------------------------hHHHhhccCCEEEEEECCCCccchHHHHHHHHhc----CCceEEEeCCCCCCccc-
Confidence 3456778899999999999999999888887765 46789999999998633
Q ss_pred CcHHHHHHHHHHHHHH
Q 008873 533 RDRIYMEERIWEFIER 548 (550)
Q Consensus 533 ~~~~~~~~~~~~fl~~ 548 (550)
+....+.+.+.+||++
T Consensus 191 ~~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 191 EKPEEFVRITVDFLRN 206 (207)
T ss_dssp HSHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhh
Confidence 4467788889999875
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-22 Score=190.56 Aligned_cols=225 Identities=16% Similarity=0.119 Sum_probs=159.8
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~ 375 (550)
..+.+.+++.+| .+.+.+| +.. ++.|+||++|||+....... .+..+...|+ ..||.|+++||||+|.
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~~-----~~~p~vv~~HGgg~~~g~~~----~~~~~~~~la~~~g~~Vv~~dyrg~g~ 123 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQK-----PDSPVLVYYHGGGFVICSIE----SHDALCRRIARLSNSTVVSVDYRLAPE 123 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ESS-----SSEEEEEEECCSTTTSCCTG----GGHHHHHHHHHHHTSEEEEEECCCTTT
T ss_pred eEEEEEecCCCC-cEEEEEE-cCC-----CCceEEEEECCcccccCChh----HhHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 467888988888 7888888 421 56799999999873211111 2344567777 6899999999999987
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCCCe----eEEEEEcCCcCC
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPDV----FQCAVSGAPVTS 448 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~----~~~~v~~~~~~~ 448 (550)
+... ....|+.++++|+.+. ..+|+++|+|+|+|+||.+++.++.++++. ++++++.+|+.+
T Consensus 124 ~~~p-----------~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~ 192 (311)
T 1jji_A 124 HKFP-----------AAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVN 192 (311)
T ss_dssp SCTT-----------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCC
T ss_pred CCCC-----------CcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccC
Confidence 6421 1267888899998875 246788999999999999999998876654 999999999887
Q ss_pred cccccchh------------------hhhccCCCCCCccccccCChhh-hhhcCCCcEEEEecCCCCCCChHHHHHHHHH
Q 008873 449 WDGYDTFY------------------TEKYMGLPSEDPVGYEYSSVMH-HVHKMKGKLLLVHGMIDENVHFRHTARLINA 509 (550)
Q Consensus 449 ~~~~~~~~------------------~~~~~g~~~~~~~~~~~~~~~~-~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 509 (550)
.......+ ...+++.... ......+|+. .+..+ .|+||++|+.|..+ .++..+.++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~--~~~~~~~~~ 267 (311)
T 1jji_A 193 FVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREED--KFNPLASVIFADLENL-PPALIITAEYDPLR--DEGEVFGQM 267 (311)
T ss_dssp SSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGG--GGCTTTSGGGSCCTTC-CCEEEEEEEECTTH--HHHHHHHHH
T ss_pred CCCCCccHHHhcCCCccCCHHHHHHHHHHhCCCCcc--CCCcccCcccccccCC-ChheEEEcCcCcch--HHHHHHHHH
Confidence 54321111 1112211100 0011123332 12222 59999999999987 467889999
Q ss_pred HHHcCCCeEEEEcCCCCCcCCC----CCcHHHHHHHHHHHHHH
Q 008873 510 LVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIER 548 (550)
Q Consensus 510 l~~~~~~~~~~~~p~~~H~~~~----~~~~~~~~~~~~~fl~~ 548 (550)
|++.+.+++++++|+++|.+.. ......+.+.+.+||++
T Consensus 268 l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 268 LRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998743 24557788999999975
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=185.51 Aligned_cols=206 Identities=16% Similarity=0.176 Sum_probs=149.7
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc-hhhHHH-HhhccCCCchHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG-LKFEAS-IKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~-~~~~~~-~~~~~~~~~~~D~~~~~~~l~ 404 (550)
+.|+||++||.+++.. .|..+++.|+++||.|+++|+||+|.+. ...... ....+ .+|+.++++++.
T Consensus 21 ~~~~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~~~----~~d~~~~i~~l~ 89 (251)
T 3dkr_A 21 TDTGVVLLHAYTGSPN-------DMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTKGNPDIW----WAESSAAVAHMT 89 (251)
T ss_dssp SSEEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHHCCHHHH----HHHHHHHHHHHH
T ss_pred CCceEEEeCCCCCCHH-------HHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCcccHHHH----HHHHHHHHHHHH
Confidence 4588899999766543 3455688899999999999999999883 322222 22222 678888888887
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc----hhhhhc---cCCCCCCccccc-----
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT----FYTEKY---MGLPSEDPVGYE----- 472 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~---~g~~~~~~~~~~----- 472 (550)
.+ .++++++|||+||++++.++.++|++++++++.+|......... .+.... .+... ....+.
T Consensus 90 ~~----~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 164 (251)
T 3dkr_A 90 AK----YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSD-ESTQILAYLPG 164 (251)
T ss_dssp TT----CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHH
T ss_pred Hh----cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCc-chhhHHhhhHH
Confidence 66 57999999999999999999999999999999998876432110 000000 01100 000000
Q ss_pred ------c--CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHH
Q 008873 473 ------Y--SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWE 544 (550)
Q Consensus 473 ------~--~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~ 544 (550)
. ......+.++++|+|+++|++|..+|++.+.++++++... .+++++++++++|.+....+...+.+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~ 243 (251)
T 3dkr_A 165 QLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIA 243 (251)
T ss_dssp HHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhHHHHHHHH
Confidence 0 0123456778999999999999999999999998887543 578999999999998665568899999999
Q ss_pred HHHHh
Q 008873 545 FIERT 549 (550)
Q Consensus 545 fl~~~ 549 (550)
||++.
T Consensus 244 fl~~~ 248 (251)
T 3dkr_A 244 FMQQE 248 (251)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 99864
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=188.66 Aligned_cols=201 Identities=16% Similarity=0.141 Sum_probs=143.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHH----HhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL----RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE 401 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l----~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~ 401 (550)
++.|+||++|||+....... ...|..+++.| ++.||.|+++|+|+++..... ..++|+.++++
T Consensus 39 ~~~p~vv~lHGgg~~~g~~~--~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~~~-----------~~~~d~~~~~~ 105 (273)
T 1vkh_A 39 NTREAVIYIHGGAWNDPENT--PNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITNP-----------RNLYDAVSNIT 105 (273)
T ss_dssp TCCEEEEEECCSTTTCTTCC--GGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCTT-----------HHHHHHHHHHH
T ss_pred CCCeEEEEECCCcccCCcCC--hHHHHHHHHHHhhhhccCCcEEEEeecccCCCCCCC-----------cHHHHHHHHHH
Confidence 56799999999764321000 11344456677 589999999999987643211 12678999999
Q ss_pred HHHHcCCCCCCceEEEEechhHHHHHHHHhhC-----------------CCeeEEEEEcCCcCCcccccc------hhhh
Q 008873 402 WLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-----------------PDVFQCAVSGAPVTSWDGYDT------FYTE 458 (550)
Q Consensus 402 ~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~~~------~~~~ 458 (550)
++.++ ++.++|+|+||||||++++.++.++ +++++++++.+|+.+...... .+..
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 183 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 183 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHHHHHH
Confidence 99877 4678999999999999999999875 778999999999876532211 0111
Q ss_pred hccCCCCCCccccc----cCChh--hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC
Q 008873 459 KYMGLPSEDPVGYE----YSSVM--HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 532 (550)
Q Consensus 459 ~~~g~~~~~~~~~~----~~~~~--~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~ 532 (550)
..++. ....+. ..++. ....++++|+|++||+.|..+|+.++.++++++...+.++++.++++++|.+...
T Consensus 184 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~~~~ 260 (273)
T 1vkh_A 184 LAFPD---GIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYK 260 (273)
T ss_dssp HHCTT---CGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGGGGG
T ss_pred HHhcc---cccchhhcccccChhhhhcccccCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeCCCccccccc
Confidence 11111 111111 11121 1233378999999999999999999999999999999999999999999997443
Q ss_pred CcHHHHHHHHHHHH
Q 008873 533 RDRIYMEERIWEFI 546 (550)
Q Consensus 533 ~~~~~~~~~~~~fl 546 (550)
. .++.+.+.+||
T Consensus 261 -~-~~~~~~i~~fl 272 (273)
T 1vkh_A 261 -N-GKVAKYIFDNI 272 (273)
T ss_dssp -C-HHHHHHHHHTC
T ss_pred -C-hHHHHHHHHHc
Confidence 3 67778887775
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=185.64 Aligned_cols=189 Identities=16% Similarity=0.038 Sum_probs=134.3
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHh--CCcEEEEECCCC---CCCCchhhHH--HHhh-------ccCCC
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRG---TARRGLKFEA--SIKH-------NCGRI 391 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~--~G~~vv~~d~rG---~g~~~~~~~~--~~~~-------~~~~~ 391 (550)
+++|+||++||.+.... . +..+++.|+. .++.+++|+-+. ..+.|..|.. .... .--..
T Consensus 64 ~~~plVI~LHG~G~~~~---~----~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~~~~~~~ 136 (285)
T 4fhz_A 64 EATSLVVFLHGYGADGA---D----LLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAAAEGMAA 136 (285)
T ss_dssp CCSEEEEEECCTTBCHH---H----HHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHH---H----HHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchhhHHHHH
Confidence 67899999999544321 1 2223566664 389999987431 1112222210 0000 00001
Q ss_pred chHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCcccc
Q 008873 392 DAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGY 471 (550)
Q Consensus 392 ~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 471 (550)
..+++.+.++.+.++..+|++||+|+|+|+||++++.++.++|++|++++++++.... ++
T Consensus 137 ~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~------------------~~-- 196 (285)
T 4fhz_A 137 AARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA------------------PE-- 196 (285)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC------------------HH--
T ss_pred HHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC------------------ch--
Confidence 1445666777777777789999999999999999999999999999999988764210 00
Q ss_pred ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 472 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 472 ~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
......+.++|+|++||+.|++||++.+.+++++|++.|.++++++||+.+|.+.. +.++.+.+||+++|
T Consensus 197 ----~~~~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i~~-----~~l~~~~~fL~~~L 266 (285)
T 4fhz_A 197 ----RLAEEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGIAP-----DGLSVALAFLKERL 266 (285)
T ss_dssp ----HHHHHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEETTCCSSCCH-----HHHHHHHHHHHHHC
T ss_pred ----hhhhhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH-----HHHHHHHHHHHHHC
Confidence 01122334689999999999999999999999999999999999999999998732 44678999999986
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-22 Score=182.12 Aligned_cols=218 Identities=15% Similarity=0.006 Sum_probs=151.8
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
...+| +...++.|.+ +.|+||++||.++... .|..+++.|+++||.|+++|+||+|.+.......
T Consensus 8 ~~~~g--~~~~~~~~~~------~~~~vv~~hG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~ 72 (238)
T 1ufo_A 8 LTLAG--LSVLARIPEA------PKALLLALHGLQGSKE-------HILALLPGYAERGFLLLAFDAPRHGEREGPPPSS 72 (238)
T ss_dssp EEETT--EEEEEEEESS------CCEEEEEECCTTCCHH-------HHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCT
T ss_pred cccCC--EEEEEEecCC------CccEEEEECCCcccch-------HHHHHHHHHHhCCCEEEEecCCCCccCCCCCCcc
Confidence 33455 4455666754 4589999999866543 2233467788889999999999998765321100
Q ss_pred H-------hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh
Q 008873 384 I-------KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456 (550)
Q Consensus 384 ~-------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 456 (550)
. ....-....+|+.++++++.++.. .+++++|||+||.+++.++.++|+++++++..++..........
T Consensus 73 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (238)
T 1ufo_A 73 KSPRYVEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQ- 148 (238)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCCCTTC-
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchhhhhh-
Confidence 0 000001126788888888877643 78999999999999999999999988888887765332111110
Q ss_pred hhhccCCCCCCccccccCChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHH-HcCC-CeEEEEcCCCCCcCCCCC
Q 008873 457 TEKYMGLPSEDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALV-AARK-PYEILIFPDERHMPRRHR 533 (550)
Q Consensus 457 ~~~~~g~~~~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~-~~~~-~~~~~~~p~~~H~~~~~~ 533 (550)
+..|.. ...+...++...+.++ ++|+|+++|++|..+|+..+.++++.+. ..+. +++++++++++|.+..
T Consensus 149 ----~~~~~~-~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~-- 221 (238)
T 1ufo_A 149 ----VVEDPG-VLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTP-- 221 (238)
T ss_dssp ----CCCCHH-HHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCCH--
T ss_pred ----ccCCcc-cchhhcCChhhhhhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCcccHH--
Confidence 011110 2223344556667788 8999999999999999999999999998 7776 8999999999998732
Q ss_pred cHHHHHHHHHHHHHHhC
Q 008873 534 DRIYMEERIWEFIERTL 550 (550)
Q Consensus 534 ~~~~~~~~~~~fl~~~l 550 (550)
+..+.+.+||.++|
T Consensus 222 ---~~~~~~~~~l~~~l 235 (238)
T 1ufo_A 222 ---LMARVGLAFLEHWL 235 (238)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH
Confidence 34567778877653
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=195.51 Aligned_cols=229 Identities=12% Similarity=-0.004 Sum_probs=160.1
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
...+.+.++. +|..+.++++.|.+. ++.|+||++||.++... . .+......++++||.|+++|+||+|.
T Consensus 166 ~~~~~v~i~~-~g~~l~~~~~~P~~~----~~~P~vv~~hG~~~~~~--~----~~~~~~~~l~~~G~~V~~~D~~G~G~ 234 (415)
T 3mve_A 166 YIIKQLEIPF-EKGKITAHLHLTNTD----KPHPVVIVSAGLDSLQT--D----MWRLFRDHLAKHDIAMLTVDMPSVGY 234 (415)
T ss_dssp SEEEEEEEEC-SSSEEEEEEEESCSS----SCEEEEEEECCTTSCGG--G----GHHHHHHTTGGGTCEEEEECCTTSGG
T ss_pred CCeEEEEEEE-CCEEEEEEEEecCCC----CCCCEEEEECCCCccHH--H----HHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 4568888887 788999999999762 57899999999765522 1 12234567788999999999999986
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT- 454 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 454 (550)
+.... ...........+++++...+.+|.++|+|+|||+||++++.++..+|++++++|+.+|+.+......
T Consensus 235 s~~~~-------~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~ 307 (415)
T 3mve_A 235 SSKYP-------LTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQ 307 (415)
T ss_dssp GTTSC-------CCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHH
T ss_pred CCCCC-------CCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHH
Confidence 64311 1111123345678888888888999999999999999999999988999999999999854211100
Q ss_pred -------hh---hhhccCCCCCCcc----ccccCChhhh----hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Q 008873 455 -------FY---TEKYMGLPSEDPV----GYEYSSVMHH----VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 516 (550)
Q Consensus 455 -------~~---~~~~~g~~~~~~~----~~~~~~~~~~----~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 516 (550)
.+ ....++....... .+...++... ..++++|+|+++|+.|..+|++.+..+.+ .+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~----~~~~ 383 (415)
T 3mve_A 308 KLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAF----FSTY 383 (415)
T ss_dssp HHTTSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHH----TBTT
T ss_pred HHHHhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHH----hCCC
Confidence 00 0111222211111 1112222111 35788999999999999999998877665 4678
Q ss_pred eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 517 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.+++++|+..+ . .......+.+.+||+++|
T Consensus 384 ~~l~~i~g~~~-h---~~~~~~~~~i~~fL~~~L 413 (415)
T 3mve_A 384 GKAKKISSKTI-T---QGYEQSLDLAIKWLEDEL 413 (415)
T ss_dssp CEEEEECCCSH-H---HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCc-c---cchHHHHHHHHHHHHHHh
Confidence 89999998221 1 256678899999999874
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-21 Score=173.39 Aligned_cols=184 Identities=14% Similarity=0.007 Sum_probs=135.8
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHh--CCcEEEEECCCC-------------------CCCCchhhHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRG-------------------TARRGLKFEASI 384 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~--~G~~vv~~d~rG-------------------~g~~~~~~~~~~ 384 (550)
++.|+||++||.++... .+....+.|++ +||.|+++|.+| .|.+........
T Consensus 12 ~~~~~vv~~HG~~~~~~-------~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~ 84 (218)
T 1auo_A 12 PADACVIWLHGLGADRY-------DFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEEL 84 (218)
T ss_dssp CCSEEEEEECCTTCCTT-------TTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHH
T ss_pred CCCcEEEEEecCCCChh-------hHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccccchHHH
Confidence 46799999999765532 34456788888 999999998764 221111111111
Q ss_pred hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh-hCCCeeEEEEEcCCcCCcccccchhhhhccCC
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA-RFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 463 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 463 (550)
.. ..+|+.+.++++.+ ..++.++|+++|||+||++++.++. ++|++++++++.+|...... +
T Consensus 85 -~~----~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~--------~--- 147 (218)
T 1auo_A 85 -EV----SAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG--------D--- 147 (218)
T ss_dssp -HH----HHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCC--------T---
T ss_pred -HH----HHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCch--------h---
Confidence 11 14556666666655 4568889999999999999999999 99999999999998765300 0
Q ss_pred CCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 464 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
+ +. ....++++|+|+++|++|..+|++.+.++++.+...+.++++.+++ ++|.+.. +..+.+.
T Consensus 148 ~----~~-------~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~~-----~~~~~~~ 210 (218)
T 1auo_A 148 E----LE-------LSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVLP-----QEIHDIG 210 (218)
T ss_dssp T----CC-------CCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCCH-----HHHHHHH
T ss_pred h----hh-------hhhcccCCCEEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEec-CCCccCH-----HHHHHHH
Confidence 0 00 1124567899999999999999999999999999888899999999 9998732 3467889
Q ss_pred HHHHHhC
Q 008873 544 EFIERTL 550 (550)
Q Consensus 544 ~fl~~~l 550 (550)
+||.++|
T Consensus 211 ~~l~~~l 217 (218)
T 1auo_A 211 AWLAARL 217 (218)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-21 Score=183.25 Aligned_cols=232 Identities=17% Similarity=0.169 Sum_probs=155.0
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+.+.++. +|..+....+.+... .++.|+||++||.+++.. .|..+++.|+++||.|+++|+||+|.+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~p~vv~~hG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~G~s 87 (315)
T 4f0j_A 19 PVHYLDFTS-QGQPLSMAYLDVAPK---KANGRTILLMHGKNFCAG-------TWERTIDVLADAGYRVIAVDQVGFCKS 87 (315)
T ss_dssp CCEEEEEEE-TTEEEEEEEEEECCS---SCCSCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTS
T ss_pred cceeEEEec-CCCCeeEEEeecCCC---CCCCCeEEEEcCCCCcch-------HHHHHHHHHHHCCCeEEEeecCCCCCC
Confidence 457777776 554554444433221 145689999999876543 345568889999999999999999977
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc------
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD------ 450 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~------ 450 (550)
..... .....+++.+.+..+.++- +.++++|+|||+||++++.++.++|++++++|+.+|.....
T Consensus 88 ~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 158 (315)
T 4f0j_A 88 SKPAH-------YQYSFQQLAANTHALLERL--GVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGV 158 (315)
T ss_dssp CCCSS-------CCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTC
T ss_pred CCCCc-------cccCHHHHHHHHHHHHHHh--CCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccc
Confidence 54211 2345677777777776653 45689999999999999999999999999999998864211
Q ss_pred ---cccchh---------------hhhccCCCCCC-c---------------------------cccccCChhhhhhcCC
Q 008873 451 ---GYDTFY---------------TEKYMGLPSED-P---------------------------VGYEYSSVMHHVHKMK 484 (550)
Q Consensus 451 ---~~~~~~---------------~~~~~g~~~~~-~---------------------------~~~~~~~~~~~~~~i~ 484 (550)
...... ...+....... . ......+....+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (315)
T 4f0j_A 159 PWRSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQ 238 (315)
T ss_dssp CCCCHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCC
T ss_pred hhhhhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCC
Confidence 000000 00000000000 0 0001122334578889
Q ss_pred CcEEEEecCCCCCCChHHH------------HHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 485 GKLLLVHGMIDENVHFRHT------------ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~------------~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+|+|+++|+.|..+|..+. .+..+.+.+...+++++++++++|.+ ..++...+.+.+.+||+++
T Consensus 239 ~P~lii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~ 314 (315)
T 4f0j_A 239 MPTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTP-QIQAPERFHQALLEGLQTQ 314 (315)
T ss_dssp SCEEEEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCH-HHHSHHHHHHHHHHHHCC-
T ss_pred CCeEEEEecCCCcCccccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcch-hhhCHHHHHHHHHHHhccC
Confidence 9999999999999994433 44445555555788999999999986 3456788899999999753
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-21 Score=184.43 Aligned_cols=220 Identities=12% Similarity=0.083 Sum_probs=150.0
Q ss_pred eEEEEE---cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC-
Q 008873 299 DIVQIQ---ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA- 374 (550)
Q Consensus 299 ~~~~~~---~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g- 374 (550)
..+++. ..++..+.++++.|.+.. ++.|+||++||++.... .| +..+.+.++++||.|+++|+|+.+
T Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~P~~~~---~~~p~vv~lHG~~~~~~---~~---~~~~~~~l~~~g~~v~~~d~~~~~~ 95 (304)
T 3d0k_A 25 NAIPYLDDDRNADRPFTLNTYRPYGYT---PDRPVVVVQHGVLRNGA---DY---RDFWIPAADRHKLLIVAPTFSDEIW 95 (304)
T ss_dssp EEEEECC---CTTCCEEEEEEECTTCC---TTSCEEEEECCTTCCHH---HH---HHHTHHHHHHHTCEEEEEECCTTTS
T ss_pred ceEEecccCCCCCceEEEEEEeCCCCC---CCCcEEEEeCCCCCCHH---HH---HHHHHHHHHHCCcEEEEeCCccccC
Confidence 345565 567888999999997642 46799999999876542 12 133467788899999999999542
Q ss_pred -------------CCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC-eeEEE
Q 008873 375 -------------RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCA 440 (550)
Q Consensus 375 -------------~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~ 440 (550)
.++.. .......+.|+.++++++.++..+|.++|+|+|||+||++++.++.++|+ +++++
T Consensus 96 p~~~~~~~g~~~g~s~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 169 (304)
T 3d0k_A 96 PGVESYNNGRAFTAAGNP------RHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAV 169 (304)
T ss_dssp CHHHHTTTTTCBCTTSCB------CCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEE
T ss_pred CCccccccCccccccCCC------CcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEE
Confidence 21110 00112345789999999998877899999999999999999999999985 67777
Q ss_pred EEcC-CcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCC-----------------hHH
Q 008873 441 VSGA-PVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVH-----------------FRH 502 (550)
Q Consensus 441 v~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~-----------------~~~ 502 (550)
|+.. |..++...... ...+... ...++......+++|+|++||+.|..+. ...
T Consensus 170 vl~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~ 240 (304)
T 3d0k_A 170 TAANPGWYTLPTFEHR---FPEGLDG------VGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYAR 240 (304)
T ss_dssp EEESCSSCCCSSTTSB---TTTSSBT------TTCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHH
T ss_pred EEecCcccccCCcccc---CccccCC------CCCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccHHHH
Confidence 7544 65443222110 0011110 0124444445567899999999998752 345
Q ss_pred HHHHHHHHH----HcCCC--eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 503 TARLINALV----AARKP--YEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 503 ~~~~~~~l~----~~~~~--~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+.+++++++ +.+.+ ++++++|+++|.+. .....+.+||.+
T Consensus 241 ~~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~~------~~~~~~~~~~~~ 286 (304)
T 3d0k_A 241 ARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQ------AMSQVCASLWFD 286 (304)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEEEETTCCSCHH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEeCCCCCchH------HHHHHHHHHHhh
Confidence 667777775 56776 99999999999872 345667777654
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=190.49 Aligned_cols=245 Identities=15% Similarity=0.123 Sum_probs=162.0
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCC-CCCCceEEEEEcCCCCceeeccccccc--chhHhHHHHhCCcEEEEECCCC
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRY-GPPPYKTLISVYGGPCVQLVCDSWINT--VDMRAQYLRSKGILVWKLDNRG 372 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~-~~~~~P~vv~~hGg~~~~~~~~~~~~~--~~~~~~~l~~~G~~vv~~d~rG 372 (550)
...+.+.+++.||..+.++.+.|..... ..++.|+||++||.+++.. .|... ...+++.|+++||.|+++|+||
T Consensus 25 ~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~---~~~~~~~~~~~a~~l~~~G~~vi~~D~~G 101 (377)
T 1k8q_A 25 YPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASAT---NWISNLPNNSLAFILADAGYDVWLGNSRG 101 (377)
T ss_dssp CCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGG---GGSSSCTTTCHHHHHHHTTCEEEECCCTT
T ss_pred CCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCchh---hhhcCCCcccHHHHHHHCCCCEEEecCCC
Confidence 3568889999999999999887754210 0125689999999876543 33221 1234568999999999999999
Q ss_pred CCCCchhhHH-HHhhccCCCc----hH-HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC---eeEEEEEc
Q 008873 373 TARRGLKFEA-SIKHNCGRID----AE-DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD---VFQCAVSG 443 (550)
Q Consensus 373 ~g~~~~~~~~-~~~~~~~~~~----~~-D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~---~~~~~v~~ 443 (550)
+|.+...... .....+.... .+ |+.++++++.++. +.++++++||||||.+++.++.++|+ +++++|+.
T Consensus 102 ~G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~ 179 (377)
T 1k8q_A 102 NTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYAL 179 (377)
T ss_dssp STTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEE
T ss_pred CCCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEe
Confidence 9987542000 0000000111 34 7777888877653 34689999999999999999999998 79999999
Q ss_pred CCcCCcccccchh----------hhhccC-------------------------------------C-------------
Q 008873 444 APVTSWDGYDTFY----------TEKYMG-------------------------------------L------------- 463 (550)
Q Consensus 444 ~~~~~~~~~~~~~----------~~~~~g-------------------------------------~------------- 463 (550)
+|...+....... ....++ .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (377)
T 1k8q_A 180 APVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVY 259 (377)
T ss_dssp SCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHH
T ss_pred CCchhcccchhHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCcccCCHHHHHHH
Confidence 8875432111000 000000 0
Q ss_pred ----CCCC-cc------------ccccC----------------ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHH
Q 008873 464 ----PSED-PV------------GYEYS----------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 510 (550)
Q Consensus 464 ----~~~~-~~------------~~~~~----------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l 510 (550)
+... .. .+... .+...+.++++|+|+++|++|..+|++.+.++++.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~ 339 (377)
T 1k8q_A 260 LSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKL 339 (377)
T ss_dssp HTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTC
T ss_pred hccCCCCccHHHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccCHHHHHHHHHhC
Confidence 0000 00 00000 012237788999999999999999999888877655
Q ss_pred HHcCCCeE-EEEcCCCCCcCCC--CCcHHHHHHHHHHHHHHh
Q 008873 511 VAARKPYE-ILIFPDERHMPRR--HRDRIYMEERIWEFIERT 549 (550)
Q Consensus 511 ~~~~~~~~-~~~~p~~~H~~~~--~~~~~~~~~~~~~fl~~~ 549 (550)
.... ++++|+++|.... .+....+.+.+.+||+++
T Consensus 340 ----~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 340 ----PNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp ----TTEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred ----cCcccEEecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 2344 8999999998632 467788999999999864
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=183.49 Aligned_cols=213 Identities=15% Similarity=0.126 Sum_probs=139.6
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~ 376 (550)
++...+++.+|..++++.+.|... .+++.|+||++||.+.+.. .|...++.|+++||.|+++|+||+ |.+
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~--~~~~~~~VvllHG~g~~~~-------~~~~~~~~L~~~G~~Vi~~D~rGh~G~S 77 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKEN--VPFKNNTILIASGFARRMD-------HFAGLAEYLSTNGFHVFRYDSLHHVGLS 77 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTT--SCCCSCEEEEECTTCGGGG-------GGHHHHHHHHTTTCCEEEECCCBCC---
T ss_pred ceEEEEEcCCCCEEEEEEecCccc--CCCCCCEEEEecCCccCch-------HHHHHHHHHHHCCCEEEEeeCCCCCCCC
Confidence 466778888999999999987642 1134588999999765532 345568889999999999999998 766
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-ch
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-TF 455 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~ 455 (550)
........... ..+|+.++++++.+. +.++++|+||||||.+++.++.+ | +++++|+.++..++.... ..
T Consensus 78 ~~~~~~~~~~~----~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~ 148 (305)
T 1tht_A 78 SGSIDEFTMTT----GKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKA 148 (305)
T ss_dssp -----CCCHHH----HHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHH
T ss_pred CCcccceehHH----HHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHH
Confidence 43211100011 156788888888744 34689999999999999999987 6 788888877765432100 00
Q ss_pred hhhhcc-----CCCCC----C----ccccc----c------CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHH
Q 008873 456 YTEKYM-----GLPSE----D----PVGYE----Y------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 512 (550)
Q Consensus 456 ~~~~~~-----g~~~~----~----~~~~~----~------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 512 (550)
....+. ..+.. . ...+. . .+....+.++++|+|++||++|..+|+..+.++++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp~~~~~~l~~~i~- 227 (305)
T 1tht_A 149 LGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIR- 227 (305)
T ss_dssp HSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCT-
T ss_pred hhhhhhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhcC-
Confidence 000000 00000 0 00000 0 01234577899999999999999999998887776541
Q ss_pred cCCCeEEEEcCCCCCcCC
Q 008873 513 ARKPYEILIFPDERHMPR 530 (550)
Q Consensus 513 ~~~~~~~~~~p~~~H~~~ 530 (550)
..+.+++++|+++|.+.
T Consensus 228 -~~~~~l~~i~~agH~~~ 244 (305)
T 1tht_A 228 -TGHCKLYSLLGSSHDLG 244 (305)
T ss_dssp -TCCEEEEEETTCCSCTT
T ss_pred -CCCcEEEEeCCCCCchh
Confidence 24689999999999973
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=173.19 Aligned_cols=179 Identities=13% Similarity=0.001 Sum_probs=133.1
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCC-------------CCCCCchh-h-HHHHhhccCC
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR-------------GTARRGLK-F-EASIKHNCGR 390 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~r-------------G~g~~~~~-~-~~~~~~~~~~ 390 (550)
++.| ||++||.++... .|..+.+.|+ .|+.|+++|.+ |.|..+.. + .....
T Consensus 15 ~~~p-vv~lHG~g~~~~-------~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~----- 80 (209)
T 3og9_A 15 DLAP-LLLLHSTGGDEH-------QLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLD----- 80 (209)
T ss_dssp TSCC-EEEECCTTCCTT-------TTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHH-----
T ss_pred CCCC-EEEEeCCCCCHH-------HHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHH-----
Confidence 4678 999999765432 2334556666 79999999944 44332211 0 11111
Q ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccc
Q 008873 391 IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 470 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 470 (550)
...+++.+.++.+.++..+|+++|+|+||||||++++.++.++|++++++++.+|.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------------------ 142 (209)
T 3og9_A 81 EETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFE------------------ 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCccc------------------
Confidence 12566667777777766678899999999999999999999999999999999886432110
Q ss_pred cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 471 YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 471 ~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
......++|+|++||++|..+|++++.+++++|++.+.++++.+++ ++|.+. .+..+.+.+||+++
T Consensus 143 -------~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~-----~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 143 -------QTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESS-LGHQLT-----QEEVLAAKKWLTET 208 (209)
T ss_dssp -------CCCCCTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEECS-STTSCC-----HHHHHHHHHHHHHH
T ss_pred -------ccccccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEcC-CCCcCC-----HHHHHHHHHHHHhh
Confidence 0123456899999999999999999999999999999999999998 699883 24468899999875
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=186.94 Aligned_cols=213 Identities=10% Similarity=-0.042 Sum_probs=147.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCchhhHHHHhhccC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCG 389 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~ 389 (550)
+.++++.|.+ ++.|+||++|||+....... .+..+...|+ +.||.|+++|+||++.... ..
T Consensus 84 ~~~~~~~p~~-----~~~p~vv~lHGgg~~~~~~~----~~~~~~~~la~~~g~~vi~~D~r~~~~~~~--~~------- 145 (326)
T 3d7r_A 84 MQVFRFNFRH-----QIDKKILYIHGGFNALQPSP----FHWRLLDKITLSTLYEVVLPIYPKTPEFHI--DD------- 145 (326)
T ss_dssp EEEEEEESTT-----CCSSEEEEECCSTTTSCCCH----HHHHHHHHHHHHHCSEEEEECCCCTTTSCH--HH-------
T ss_pred EEEEEEeeCC-----CCCeEEEEECCCcccCCCCH----HHHHHHHHHHHHhCCEEEEEeCCCCCCCCc--hH-------
Confidence 6667788865 24589999999864321111 2233455565 5699999999999765331 11
Q ss_pred CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCe----eEEEEEcCCcCCcccccchhh--------
Q 008873 390 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV----FQCAVSGAPVTSWDGYDTFYT-------- 457 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~-------- 457 (550)
.++|+.++++++.++ ++.++|+|+|+||||.+++.++.++|++ ++++|+.+|..+.........
T Consensus 146 --~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~ 221 (326)
T 3d7r_A 146 --TFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDALIEQDA 221 (326)
T ss_dssp --HHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHHHHHHCS
T ss_pred --HHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhhhcccCc
Confidence 268899999999887 5788999999999999999999877655 899999999876542211111
Q ss_pred -----------hhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCC
Q 008873 458 -----------EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 526 (550)
Q Consensus 458 -----------~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~ 526 (550)
..+.+.... .....+++...-+..+|+||++|+.|. +..++..+.+++.+.+.++++.++|+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~P~lii~G~~D~--~~~~~~~~~~~l~~~~~~~~~~~~~g~~ 296 (326)
T 3d7r_A 222 VLSQFGVNEIMKKWANGLPL---TDKRISPINGTIEGLPPVYMFGGGREM--THPDMKLFEQMMLQHHQYIEFYDYPKMV 296 (326)
T ss_dssp SCCHHHHHHHHHHHHTTSCT---TSTTTSGGGSCCTTCCCEEEEEETTST--THHHHHHHHHHHHHTTCCEEEEEETTCC
T ss_pred ccCHHHHHHHHHHhcCCCCC---CCCeECcccCCcccCCCEEEEEeCccc--chHHHHHHHHHHHHCCCcEEEEEeCCCc
Confidence 111111000 001122222111112599999999996 4567788999999999999999999999
Q ss_pred CcCCC--CCcHHHHHHHHHHHHHHhC
Q 008873 527 HMPRR--HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 527 H~~~~--~~~~~~~~~~~~~fl~~~l 550 (550)
|.+.. .+....+.+.+.+||+++|
T Consensus 297 H~~~~~~~~~~~~~~~~i~~fl~~~l 322 (326)
T 3d7r_A 297 HDFPIYPIRQSHKAIKQIAKSIDEDV 322 (326)
T ss_dssp TTGGGSSSHHHHHHHHHHHHHHTSCC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHh
Confidence 98744 3567788999999998764
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=170.95 Aligned_cols=183 Identities=14% Similarity=0.028 Sum_probs=135.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHh--CCcEEEEECCCC-------------------CCCCchhhHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRG-------------------TARRGLKFEASI 384 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~--~G~~vv~~d~rG-------------------~g~~~~~~~~~~ 384 (550)
++.|+||++||.+.+.. .|..+.+.|++ +||.|+++|++| .|.+........
T Consensus 22 ~~~~~vv~lHG~~~~~~-------~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~ 94 (226)
T 3cn9_A 22 NADACIIWLHGLGADRT-------DFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQL 94 (226)
T ss_dssp TCCEEEEEECCTTCCGG-------GGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTTCBCHHHH
T ss_pred CCCCEEEEEecCCCChH-------HHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccccccchhH
Confidence 56799999999876532 24446778887 999999988774 321111111111
Q ss_pred hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh-hCCCeeEEEEEcCCcCCcccccchhhhhccCC
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA-RFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 463 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 463 (550)
.+ ..+|+.+.++.+.+ ..++.++|+|+|||+||.+++.++. ++|++++++++.+|..+.... +
T Consensus 95 -~~----~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~-------~--- 158 (226)
T 3cn9_A 95 -NA----SADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDD-------L--- 158 (226)
T ss_dssp -HH----HHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGG-------C---
T ss_pred -HH----HHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchh-------h---
Confidence 11 13455555555554 3467889999999999999999999 999999999999986543210 0
Q ss_pred CCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 464 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
.. ...++++|+|+++|+.|..+|++.+.++++.+...+.++++++++ ++|.+. .+..+.+.
T Consensus 159 ---------~~----~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~~i~ 219 (226)
T 3cn9_A 159 ---------AL----DERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEVS-----LEEIHDIG 219 (226)
T ss_dssp ---------CC----CTGGGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEES-CCSSCC-----HHHHHHHH
T ss_pred ---------hh----cccccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEec-CCCCcc-----hhhHHHHH
Confidence 00 125567899999999999999999999999999988899999999 999872 23467899
Q ss_pred HHHHHhC
Q 008873 544 EFIERTL 550 (550)
Q Consensus 544 ~fl~~~l 550 (550)
+||+++|
T Consensus 220 ~~l~~~l 226 (226)
T 3cn9_A 220 AWLRKRL 226 (226)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 9999876
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=198.35 Aligned_cols=237 Identities=16% Similarity=0.175 Sum_probs=164.7
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeec-----cccc-------cc---c-hhHhHHHH
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC-----DSWI-------NT---V-DMRAQYLR 359 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~-----~~~~-------~~---~-~~~~~~l~ 359 (550)
...+.+.|+..||..|.+.+|.|.+. +++|+||+.||........ ..|. .. | ...++.|+
T Consensus 39 ~~~~~v~i~~~DG~~L~a~l~~P~~~----~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la 114 (560)
T 3iii_A 39 IMEKDGTVEMRDGEKLYINIFRPNKD----GKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWV 114 (560)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECSSS----SCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHG
T ss_pred EEEEEEEEECCCCcEEEEEEEecCCC----CCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHHH
Confidence 34578999999999999999999863 6899999999855432100 0010 00 1 11268899
Q ss_pred hCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEE
Q 008873 360 SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQC 439 (550)
Q Consensus 360 ~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~ 439 (550)
++||+|+++|+||+|+++..+. .++..+.+|+.++++||.+++++| .||+++|+||||++++.+|+.+|+.++|
T Consensus 115 ~~Gy~vv~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~a 188 (560)
T 3iii_A 115 PNDYVVVKVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKA 188 (560)
T ss_dssp GGTCEEEEEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEE
T ss_pred hCCCEEEEEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEE
Confidence 9999999999999999987654 223346899999999999998877 8999999999999999999998999999
Q ss_pred EEEcCCcCCccc---cc---------chhhh----h-------------ccCCCCCCccccccCChhhhhhcCCCcEEEE
Q 008873 440 AVSGAPVTSWDG---YD---------TFYTE----K-------------YMGLPSEDPVGYEYSSVMHHVHKMKGKLLLV 490 (550)
Q Consensus 440 ~v~~~~~~~~~~---~~---------~~~~~----~-------------~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii 490 (550)
+|+.+|+.|+.. +. ..+.. . ++..|..+ +.|...++ ++++|++|+|++
T Consensus 189 iv~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d-~~W~~~~~--~~~~I~vPvl~v 265 (560)
T 3iii_A 189 MIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFD-DFWKQRQV--PLSQIKTPLLTC 265 (560)
T ss_dssp EEEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSC-HHHHTTBC--CGGGCCSCEEEE
T ss_pred EEecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcc-hHhhccCC--chhhCCCCEEEe
Confidence 999999988531 10 00100 0 00111111 22333333 678999999999
Q ss_pred ecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 491 HGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 491 ~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+|..|..+....+.+.++++... ...+.+.+ .+|+. . .......+..++||++||
T Consensus 266 ~Gw~D~~~~~~g~l~~y~~l~~~--~k~l~ih~-~~~~~-~-~~~~~~~~~~~~wfD~~L 320 (560)
T 3iii_A 266 ASWSTQGLHNRGSFEGFKQAASE--EKWLYVHG-RKEWE-S-YYARENLERQKSFFDFYL 320 (560)
T ss_dssp EEGGGTTTTHHHHHHHHHHCCCS--SEEEEEES-SCHHH-H-HHSHHHHHHHHHHHHHHT
T ss_pred CCcCCCcccchhHHHHHHhcccc--CcEEEECC-CCCcC-c-ccChhHHHHHHHHHHHHh
Confidence 99999877777788888776433 22333322 12221 0 011245678899999987
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=181.05 Aligned_cols=241 Identities=12% Similarity=0.047 Sum_probs=159.6
Q ss_pred CCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 296 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 296 ~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
.+.+.+++.+. .+..+.++ +.|.. +++|+||++||++.... ...|... ....+++++.|++|+++|.+++.
T Consensus 7 ~~v~~~~~~S~~~~~~i~v~-~~p~~-----~~~p~vvllHG~~~~~~-~~~w~~~-~~~~~~~~~~~~~vv~p~~~~~~ 78 (304)
T 1sfr_A 7 LPVEYLQVPSPSMGRDIKVQ-FQSGG-----ANSPALYLLDGLRAQDD-FSGWDIN-TPAFEWYDQSGLSVVMPVGGQSS 78 (304)
T ss_dssp CCCEEEEEEETTTTEEEEEE-EECCS-----TTBCEEEEECCTTCCSS-SCHHHHH-CCHHHHHTTSSCEEEEECCCTTC
T ss_pred ceEEEEEEECccCCCceEEE-ECCCC-----CCCCEEEEeCCCCCCCC-cchhhcC-CCHHHHHhcCCeEEEEECCCCCc
Confidence 45678888875 45677777 55543 46899999999843111 1223211 11246677889999999998754
Q ss_pred CCchhhHHH--HhhccCCCchHHHH--HHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 375 RRGLKFEAS--IKHNCGRIDAEDQL--TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 375 ~~~~~~~~~--~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
.+.. +... ..+..+.....+.+ +.+.++.++..+++++++|+|+||||++++.++.++|++|+++++.+|..++.
T Consensus 79 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~ 157 (304)
T 1sfr_A 79 FYSD-WYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPS 157 (304)
T ss_dssp TTCB-CSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTT
T ss_pred cccc-cCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcc
Confidence 3321 0000 00000112233332 34445554434677899999999999999999999999999999999987754
Q ss_pred ccc--ch-----------hhhhccCCCCCCccccccCChhhhhhcC---CCcEEEEecCCCC--------------CCCh
Q 008873 451 GYD--TF-----------YTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDE--------------NVHF 500 (550)
Q Consensus 451 ~~~--~~-----------~~~~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~--------------~v~~ 500 (550)
... .. ..+..++.+. ...+...+|...+.++ ..|++|++|+.|. .++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~ 235 (304)
T 1sfr_A 158 QAMGPTLIGLAMGDAGGYKASDMWGPKE--DPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVR 235 (304)
T ss_dssp STTHHHHHHHHHHHTTSCCHHHHHCSTT--STHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHH
T ss_pred ccchhhhhhHhhhhccccchHHhcCCcc--hhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHHH
Confidence 321 00 0111223322 2345666776666555 5899999999998 6788
Q ss_pred HHHHHHHHHHHHcC-CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 501 RHTARLINALVAAR-KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 501 ~~~~~~~~~l~~~~-~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.++.+++++|+++| +++++.+|++++|.+. .....+..++.||.++|
T Consensus 236 ~~~~~~~~~L~~~G~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l 283 (304)
T 1sfr_A 236 TSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRAL 283 (304)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhc
Confidence 99999999999999 9999999987899862 23445567888887754
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=172.93 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=138.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEE--CCCCCCCCch-------hh-HHHHhhccCCCchHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL--DNRGTARRGL-------KF-EASIKHNCGRIDAED 395 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~--d~rG~g~~~~-------~~-~~~~~~~~~~~~~~D 395 (550)
++.|+||++||+++... .|....+.|++ ||.|+++ |.+|.|.+.. .+ ..... ....+
T Consensus 36 ~~~~~vv~~HG~~~~~~-------~~~~~~~~l~~-g~~v~~~~~d~~g~g~s~~~~~~~~~~~~~~~~~-----~~~~~ 102 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGNEL-------DLLPLAEIVDS-EASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLI-----FRTKE 102 (226)
T ss_dssp TTSCEEEEECCTTCCTT-------TTHHHHHHHHT-TSCEEEECCSEEETTEEESSCEEETTEECHHHHH-----HHHHH
T ss_pred CCCcEEEEEecCCCChh-------HHHHHHHHhcc-CceEEEecCcccCCcchhhccccCccCcChhhHH-----HHHHH
Confidence 35699999999876532 23445677777 9999999 8888875421 00 01110 11456
Q ss_pred HHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCC
Q 008873 396 QLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSS 475 (550)
Q Consensus 396 ~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 475 (550)
+.+.++++.++..++.++|+++|||+||++++.++..+|++++++++.+|......
T Consensus 103 ~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------------ 158 (226)
T 2h1i_A 103 LNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG------------------------ 158 (226)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS------------------------
T ss_pred HHHHHHHHHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc------------------------
Confidence 66777777777777889999999999999999999999999999999998754321
Q ss_pred hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 476 VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 476 ~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
......+++|+|+++|+.|..+|+..+.++++.+.+.+.++++ ++++++|.+. .+..+.+.+||.++|
T Consensus 159 -~~~~~~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 159 -MQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp -CCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHHHHHC
T ss_pred -cccccccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHHHHhC
Confidence 0112234689999999999999999999999999888888888 9999999872 355788999999876
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=180.23 Aligned_cols=217 Identities=22% Similarity=0.261 Sum_probs=139.7
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
++...||..+++..+.. + |.||++||.+.+.. .|......|+++||.|+++|+||+|.+.....
T Consensus 2 ~~~~~~g~~l~y~~~G~-------g--~~vvllHG~~~~~~-------~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~ 65 (271)
T 3ia2_A 2 TFVAKDGTQIYFKDWGS-------G--KPVLFSHGWLLDAD-------MWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWT 65 (271)
T ss_dssp EEECTTSCEEEEEEESS-------S--SEEEEECCTTCCGG-------GGHHHHHHHHTTTCEEEEECCTTSTTSCCCSS
T ss_pred eEEcCCCCEEEEEccCC-------C--CeEEEECCCCCcHH-------HHHHHHHHHHhCCceEEEecCCCCccCCCCCC
Confidence 36677999998876631 1 45788999766542 34456778889999999999999998864321
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh-CCCeeEEEEEcCCcCCccc--------c
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDG--------Y 452 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~-~~~~~~~~v~~~~~~~~~~--------~ 452 (550)
......+ .+|+.+.++.+ +.+++.|+||||||++++.+++. .|++++++++.++...... .
T Consensus 66 ~~~~~~~----a~d~~~~l~~l------~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 135 (271)
T 3ia2_A 66 GNDYDTF----ADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGV 135 (271)
T ss_dssp CCSHHHH----HHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSB
T ss_pred CCCHHHH----HHHHHHHHHHh------CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccc
Confidence 1111111 34444444444 34689999999999866665554 4899999998876432110 0
Q ss_pred c-chh------------------hhhccCCC---CCCc----------------------cccccCChhhhhhcCCCcEE
Q 008873 453 D-TFY------------------TEKYMGLP---SEDP----------------------VGYEYSSVMHHVHKMKGKLL 488 (550)
Q Consensus 453 ~-~~~------------------~~~~~g~~---~~~~----------------------~~~~~~~~~~~~~~i~~P~l 488 (550)
. ..+ ...+.+.. .... ..+...+....+.++++|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~L 215 (271)
T 3ia2_A 136 PLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTL 215 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSCEE
T ss_pred cHHHHHHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCCEE
Confidence 0 000 00000000 0000 00011122334678999999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+++|++|..+|++.+.+++.++ ..+.++.++|+++|.+ ..++...+.+.+.+||++
T Consensus 216 vi~G~~D~~~p~~~~~~~~~~~---~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~Fl~~ 271 (271)
T 3ia2_A 216 VIHGDGDQIVPFETTGKVAAEL---IKGAELKVYKDAPHGF-AVTHAQQLNEDLLAFLKR 271 (271)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTH-HHHTHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcCChHHHHHHHHHh---CCCceEEEEcCCCCcc-cccCHHHHHHHHHHHhhC
Confidence 9999999999998866665544 3467999999999987 446678889999999863
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-20 Score=173.81 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=140.5
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
+++.+|..+++..+.|.. .|.||++||.+.+.. .|...+..|+++||.|+++|+||+|.+.....
T Consensus 3 ~~~~~g~~l~y~~~g~~~-------~~~vvllHG~~~~~~-------~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~- 67 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPRD-------GLPVVFHHGWPLSAD-------DWDNQMLFFLSHGYRVIAHDRRGHGRSDQPST- 67 (275)
T ss_dssp EECTTSCEEEEEEESCTT-------SCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS-
T ss_pred EEccCCCEEEEEEcCCCC-------CceEEEECCCCCchh-------hHHHHHHHHHHCCceEEEEcCCcCCCCCCCCC-
Confidence 566788889887775532 267889999766532 34556788999999999999999998764211
Q ss_pred HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCccc--------cc
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG--------YD 453 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~~~--------~~ 453 (550)
...++++.+.+..+.+.- +.+++.|+||||||.+++.++.++ |++++++|+.++...... ..
T Consensus 68 -------~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 138 (275)
T 1a88_A 68 -------GHDMDTYAADVAALTEAL--DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLP 138 (275)
T ss_dssp -------CCSHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBC
T ss_pred -------CCCHHHHHHHHHHHHHHc--CCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCC
Confidence 122333333333333221 345899999999999998877776 999999999876432100 00
Q ss_pred -ch---------------hhh----hccCCC--C--CCcc---c-------------------cccCChhhhhhcCCCcE
Q 008873 454 -TF---------------YTE----KYMGLP--S--EDPV---G-------------------YEYSSVMHHVHKMKGKL 487 (550)
Q Consensus 454 -~~---------------~~~----~~~g~~--~--~~~~---~-------------------~~~~~~~~~~~~i~~P~ 487 (550)
.. +.. .+.+.. . ...+ . +...+....+.++++|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 218 (275)
T 1a88_A 139 LEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPV 218 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCE
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccccccCCCCE
Confidence 00 000 011100 0 0000 0 00112223467789999
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 488 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 488 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
|+++|++|..+|+....+.+.++ ..+.+++++++++|.+. .++...+.+.+.+||+
T Consensus 219 lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 219 LVAHGTDDQVVPYADAAPKSAEL---LANATLKSYEGLPHGML-STHPEVLNPDLLAFVK 274 (275)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHH---STTEEEEEETTCCTTHH-HHCHHHHHHHHHHHHH
T ss_pred EEEecCCCccCCcHHHHHHHHhh---CCCcEEEEcCCCCccHH-HhCHHHHHHHHHHHhh
Confidence 99999999999987554444333 34689999999999873 4567888999999986
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-20 Score=169.02 Aligned_cols=192 Identities=14% Similarity=-0.005 Sum_probs=131.9
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhC-----CcEEEEECCCCCC------CCchhhHHH-HhhccCC---
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-----GILVWKLDNRGTA------RRGLKFEAS-IKHNCGR--- 390 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~-----G~~vv~~d~rG~g------~~~~~~~~~-~~~~~~~--- 390 (550)
+++|+||++||.+++.. .|..+.+.|+.+ |+.|+++|.++.+ +.+..|... .......
T Consensus 21 ~~~p~vv~lHG~g~~~~-------~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 93 (239)
T 3u0v_A 21 RHSASLIFLHGSGDSGQ-------GLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHL 93 (239)
T ss_dssp CCCEEEEEECCTTCCHH-------HHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCH
T ss_pred CCCcEEEEEecCCCchh-------hHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccch
Confidence 46799999999766532 233345666654 7999999986531 111111000 0000000
Q ss_pred CchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCC
Q 008873 391 IDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSED 467 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 467 (550)
..++++.+.+..+.++ ..+|.++++|+||||||++++.++.++|++++++++.+|..+...... .
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~---~--------- 161 (239)
T 3u0v_A 94 ESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASAVY---Q--------- 161 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCHHH---H---------
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhHHH---H---------
Confidence 1133334334433332 447889999999999999999999999999999999998754321100 0
Q ss_pred ccccccCChhhhhhcCCCc-EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 468 PVGYEYSSVMHHVHKMKGK-LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 468 ~~~~~~~~~~~~~~~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
........+| +|++||++|..+|++++.++++++++.+.++++.++++++|.+. .+..+.+.+||
T Consensus 162 ---------~~~~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~-----~~~~~~~~~~l 227 (239)
T 3u0v_A 162 ---------ALQKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELS-----KTELDILKLWI 227 (239)
T ss_dssp ---------HHHHCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HHHHHHHHHHH
T ss_pred ---------HHHhhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC-----HHHHHHHHHHH
Confidence 0012334556 99999999999999999999999999999999999999999984 45578899999
Q ss_pred HHhC
Q 008873 547 ERTL 550 (550)
Q Consensus 547 ~~~l 550 (550)
+++|
T Consensus 228 ~~~l 231 (239)
T 3u0v_A 228 LTKL 231 (239)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8875
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=174.58 Aligned_cols=217 Identities=18% Similarity=0.215 Sum_probs=140.7
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
++..+|..+++..+.|.. .|.||++||.+.+.. .|...+..|+++||.|+++|+||+|.+......
T Consensus 4 ~~~~~g~~l~y~~~g~~~-------~~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~vi~~D~~G~G~S~~~~~~ 69 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPRD-------APVIHFHHGWPLSAD-------DWDAQLLFFLAHGYRVVAHDRRGHGRSSQVWDG 69 (276)
T ss_dssp EECTTSCEEEEEEESCTT-------SCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSSC
T ss_pred EECCCCcEEEEEecCCCC-------CCeEEEECCCCcchh-------HHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCC
Confidence 556788889888775532 267899999766532 345567889999999999999999988642110
Q ss_pred HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCcc--------ccc
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWD--------GYD 453 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~~--------~~~ 453 (550)
.....+ .+|+.+.++.+ +.+++.|+||||||.+++.++.++ |++++++|+.++..... ...
T Consensus 70 ~~~~~~----~~d~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 139 (276)
T 1zoi_A 70 HDMDHY----ADDVAAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLP 139 (276)
T ss_dssp CSHHHH----HHHHHHHHHHH------TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCCSSCTTSBC
T ss_pred CCHHHH----HHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCcccccccccccccc
Confidence 000011 34444444444 346899999999999999877776 99999999987643210 000
Q ss_pred -ch---------------hh---h-hccCCC--C--CCcc---c-------------------cccCChhhhhhcCCCcE
Q 008873 454 -TF---------------YT---E-KYMGLP--S--EDPV---G-------------------YEYSSVMHHVHKMKGKL 487 (550)
Q Consensus 454 -~~---------------~~---~-~~~g~~--~--~~~~---~-------------------~~~~~~~~~~~~i~~P~ 487 (550)
.. +. . .+.+.. . ...+ . +...+....+.++++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 219 (276)
T 1zoi_A 140 KSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPV 219 (276)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhhccccCCCE
Confidence 00 00 0 011100 0 0000 0 00112233467789999
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 488 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 488 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
|+++|++|..+|+....+.+.++ ..+.+++++|+++|.+. .++...+.+.+.+||+
T Consensus 220 l~i~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 220 LVMHGDDDQIVPYENSGVLSAKL---LPNGALKTYKGYPHGMP-TTHADVINADLLAFIR 275 (276)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHH---STTEEEEEETTCCTTHH-HHTHHHHHHHHHHHHT
T ss_pred EEEEcCCCcccChHHHHHHHHhh---CCCceEEEcCCCCCchh-hhCHHHHHHHHHHHhc
Confidence 99999999999987554444333 34689999999999873 4567888999999985
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-20 Score=173.13 Aligned_cols=232 Identities=14% Similarity=0.068 Sum_probs=155.8
Q ss_pred CCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 296 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 296 ~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
.+.+.+++.+. .|..+.++ |.|.+ + |+||++||++.... ...|... ....+++++.|++|+++|+++++
T Consensus 9 ~~~~~~~~~S~~~~~~~~~~-~~P~~------~-p~vvllHG~~~~~~-~~~w~~~-~~~~~~~~~~~~~vv~pd~~~~~ 78 (280)
T 1r88_A 9 APYENLMVPSPSMGRDIPVA-FLAGG------P-HAVYLLDAFNAGPD-VSNWVTA-GNAMNTLAGKGISVVAPAGGAYS 78 (280)
T ss_dssp CCCEEEEEEETTTTEEEEEE-EECCS------S-SEEEEECCSSCCSS-SCHHHHT-SCHHHHHTTSSSEEEEECCCTTS
T ss_pred CCEEEEEEECcccCCcceEE-EeCCC------C-CEEEEECCCCCCCC-hhhhhhc-ccHHHHHhcCCeEEEEECCCCCC
Confidence 46788888875 67888888 77754 1 79999999853211 1223211 11356778899999999998754
Q ss_pred CCchhhHHHHhhccCCCchHH-H-HHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 375 RRGLKFEASIKHNCGRIDAED-Q-LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D-~-~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
.+.. +..... + ...+ + .+.+.++.++..+|+++++|+|+||||++++.++.++|++|+++++.+|..++...
T Consensus 79 ~~~~-~~~~~~---~--~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~ 152 (280)
T 1r88_A 79 MYTN-WEQDGS---K--QWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNT 152 (280)
T ss_dssp TTSB-CSSCTT---C--BHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSH
T ss_pred ccCC-CCCCCC---C--cHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCc
Confidence 3311 000000 0 1211 1 13344444434467889999999999999999999999999999999998876432
Q ss_pred cc--h-----------hhhhccCCCCCCccccccCChhhhhhcC---CCcEEEEe----cCCCCC-------CChHHHHH
Q 008873 453 DT--F-----------YTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVH----GMIDEN-------VHFRHTAR 505 (550)
Q Consensus 453 ~~--~-----------~~~~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~----G~~D~~-------v~~~~~~~ 505 (550)
.. . ..+.+++.+. ...+...+|...++++ ..|++|+| |+.|.. ++..++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~ 230 (280)
T 1r88_A 153 TTNGAIAAGMQQFGGVDTNGMWGAPQ--LGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRM 230 (280)
T ss_dssp HHHHHHHHHHHHHHCCCTHHHHCCGG--GSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHH
T ss_pred cchhhHHHHhhhccccchhhhcCCCc--hhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHH
Confidence 10 0 0111223322 2345666777666666 57999999 999984 68899999
Q ss_pred HHHHHHHcC-CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 506 LINALVAAR-KPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 506 ~~~~l~~~~-~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++++|++.| +++++.++++++|.+.. ........+.||.+
T Consensus 231 ~~~~L~~~g~~~~~~~~~~~g~H~~~~---w~~~l~~~l~~~~~ 271 (280)
T 1r88_A 231 FYNQYRSVGGHNGHFDFPASGDNGWGS---WAPQLGAMSGDIVG 271 (280)
T ss_dssp HHHHHHHTTCCSEEEECCSSCCSSHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcceEEEecCCCCcChhH---HHHHHHHHHHHHHH
Confidence 999999999 99999999888998633 33344555666543
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=175.49 Aligned_cols=184 Identities=15% Similarity=0.043 Sum_probs=133.8
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEE--CCCCCCCCchhh---HHHHhhccCCCchHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL--DNRGTARRGLKF---EASIKHNCGRIDAEDQLTGA 400 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~--d~rG~g~~~~~~---~~~~~~~~~~~~~~D~~~~~ 400 (550)
++.|+||++||+++... .|....+.|++ +|.|+++ |++|.|++.... .............+|+.+++
T Consensus 60 ~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~l 131 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGDEN-------QFFDFGARLLP-QATILSPVGDVSEHGAARFFRRTGEGVYDMVDLERATGKMADFI 131 (251)
T ss_dssp TTSCEEEEECCTTCCHH-------HHHHHHHHHST-TSEEEEECCSEEETTEEESSCBCGGGCBCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHh-------HHHHHHHhcCC-CceEEEecCCcCCCCCcccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence 35699999999876532 23445666666 5999999 788887653100 00000000001256777778
Q ss_pred HHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhh
Q 008873 401 EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 480 (550)
Q Consensus 401 ~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 480 (550)
+++.++. +.++++|+|||+||++++.++.++|++++++|+.+|..+... ....
T Consensus 132 ~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~-------------------------~~~~ 184 (251)
T 2r8b_A 132 KANREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------KISP 184 (251)
T ss_dssp HHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC-------------------------CCCC
T ss_pred HHHHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc-------------------------cccc
Confidence 7777654 678999999999999999999999999999999998765321 0112
Q ss_pred hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 481 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
..+++|+|+++|++|..+|++.+.++++++.+.+.++++ .+++++|.+. .+..+.+.+||+++|
T Consensus 185 ~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l 248 (251)
T 2r8b_A 185 AKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAYG 248 (251)
T ss_dssp CCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGGC
T ss_pred cccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999887877776 6667899872 234578999998875
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=162.49 Aligned_cols=174 Identities=16% Similarity=0.018 Sum_probs=131.0
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
++.|+||++||.+++.. .| .+..+.+.|+++||.|+++|+||.|.+.... ......+++.++++++.+
T Consensus 2 ~~~~~vv~~HG~~~~~~---~~--~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~-------~~~~~~~~~~~~~~~~~~ 69 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPD---AL--KVTALAEVAERLGWTHERPDFTDLDARRDLG-------QLGDVRGRLQRLLEIARA 69 (176)
T ss_dssp CSSCEEEEECCTTCCTT---SH--HHHHHHHHHHHTTCEEECCCCHHHHTCGGGC-------TTCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcc---HH--HHHHHHHHHHHCCCEEEEeCCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHh
Confidence 35689999999765421 11 1234678889999999999999987654211 011113444556667666
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG 485 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 485 (550)
.. +.++++++|||+||.+++.++.++| ++++++.+|..+...+. ...++++
T Consensus 70 ~~--~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~~-------------------------~~~~~~~ 120 (176)
T 2qjw_A 70 AT--EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPLP-------------------------ALDAAAV 120 (176)
T ss_dssp HH--TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTBC-------------------------CCCCCSS
T ss_pred cC--CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCccccC-------------------------cccccCC
Confidence 54 4579999999999999999999888 89999988876542110 0456789
Q ss_pred cEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 486 KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 486 P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
|+|+++|++|..+|++.+.++++.+ +.+++++ +++|.+ .+....+.+.+.+||++
T Consensus 121 P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~-~~~H~~--~~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 121 PISIVHAWHDELIPAADVIAWAQAR-----SARLLLV-DDGHRL--GAHVQAASRAFAELLQS 175 (176)
T ss_dssp CEEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE-SSCTTC--TTCHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCccCHHHHHHHHHhC-----CceEEEe-CCCccc--cccHHHHHHHHHHHHHh
Confidence 9999999999999999999998876 4688888 899998 36778889999999875
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=170.52 Aligned_cols=198 Identities=14% Similarity=0.102 Sum_probs=140.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH--
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI-- 384 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~-- 384 (550)
++..+.+.++.|.. .+.|+||++||.++... .|..+.+.|++ ||.|+++|.++....+..|....
T Consensus 14 ~~~~l~~~~~~~~~-----~~~p~vv~lHG~g~~~~-------~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~ 80 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK-----ESRECLFLLHGSGVDET-------TLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDP 80 (223)
T ss_dssp CSSSSCEEEESTTS-----SCCCEEEEECCTTBCTT-------TTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEET
T ss_pred cCCCceEEEeCCCC-----CCCCEEEEEecCCCCHH-------HHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCC
Confidence 34556677666643 23389999999765432 23334666665 99999999876421111110000
Q ss_pred ---hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhcc
Q 008873 385 ---KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM 461 (550)
Q Consensus 385 ---~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 461 (550)
....-....+|+.+.++++.++..+|.++++|+|||+||.+++.++.++|++++++++.+|......
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~---------- 150 (223)
T 3b5e_A 81 TRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH---------- 150 (223)
T ss_dssp TEECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS----------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc----------
Confidence 0000001256777778887776567889999999999999999999999999999999988653210
Q ss_pred CCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHH
Q 008873 462 GLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEER 541 (550)
Q Consensus 462 g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~ 541 (550)
+ .....+++|+|++||++|..+|++.+. +++.+.+.+.++++++++ ++|.+.. +..+.
T Consensus 151 --~-------------~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~~-----~~~~~ 208 (223)
T 3b5e_A 151 --V-------------PATDLAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARIIP-SGHDIGD-----PDAAI 208 (223)
T ss_dssp --C-------------CCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEES-CCSCCCH-----HHHHH
T ss_pred --c-------------ccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEec-CCCCcCH-----HHHHH
Confidence 0 012335789999999999999999999 999999999999999999 9999832 33568
Q ss_pred HHHHHHHh
Q 008873 542 IWEFIERT 549 (550)
Q Consensus 542 ~~~fl~~~ 549 (550)
+.+||++.
T Consensus 209 i~~~l~~~ 216 (223)
T 3b5e_A 209 VRQWLAGP 216 (223)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHhh
Confidence 88998764
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=173.28 Aligned_cols=215 Identities=19% Similarity=0.245 Sum_probs=139.1
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
+++.+|..+++..+. +.|.||++||.+.+.. .|...+..|+++||.|+++|+||+|.+.....
T Consensus 3 ~~~~~g~~l~y~~~g---------~~~~vvllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~~- 65 (273)
T 1a8s_A 3 FTTRDGTQIYYKDWG---------SGQPIVFSHGWPLNAD-------SWESQMIFLAAQGYRVIAHDRRGHGRSSQPWS- 65 (273)
T ss_dssp EECTTSCEEEEEEES---------CSSEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS-
T ss_pred EecCCCcEEEEEEcC---------CCCEEEEECCCCCcHH-------HHhhHHhhHhhCCcEEEEECCCCCCCCCCCCC-
Confidence 566788888776552 1257889999766532 34556788999999999999999998754211
Q ss_pred HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCcc--------ccc
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWD--------GYD 453 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~~--------~~~ 453 (550)
...++++.+.+..+.+. ++.+++.|+||||||.+++.++.++ |++++++|+.++..... ...
T Consensus 66 -------~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 136 (273)
T 1a8s_A 66 -------GNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLP 136 (273)
T ss_dssp -------CCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred -------CCCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCc
Confidence 12344444444433333 1446899999999999998877665 89999999887642110 000
Q ss_pred -chh---------------h---h-hccCCC--C--CCccc----------------------cccCChhhhhhcCCCcE
Q 008873 454 -TFY---------------T---E-KYMGLP--S--EDPVG----------------------YEYSSVMHHVHKMKGKL 487 (550)
Q Consensus 454 -~~~---------------~---~-~~~g~~--~--~~~~~----------------------~~~~~~~~~~~~i~~P~ 487 (550)
..+ . . .+.+.. . ...+. +...+....+.++++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 216 (273)
T 1a8s_A 137 MEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPT 216 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCE
T ss_pred HHHHHHHHHHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCCE
Confidence 000 0 0 011100 0 00000 00112233467889999
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 488 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 488 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
|+++|++|..+|+....+.+.++ ..+.+++++|+++|.+ ..++...+.+.+.+||+
T Consensus 217 lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 217 LVVHGDADQVVPIEASGIASAAL---VKGSTLKIYSGAPHGL-TDTHKDQLNADLLAFIK 272 (273)
T ss_dssp EEEEETTCSSSCSTTTHHHHHHH---STTCEEEEETTCCSCH-HHHTHHHHHHHHHHHHH
T ss_pred EEEECCCCccCChHHHHHHHHHh---CCCcEEEEeCCCCCcc-hhhCHHHHHHHHHHHHh
Confidence 99999999999988554444433 2467999999999987 34567888999999986
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-20 Score=176.86 Aligned_cols=204 Identities=19% Similarity=0.189 Sum_probs=144.8
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccccccc---chhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH--
Q 008873 310 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINT---VDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI-- 384 (550)
Q Consensus 310 ~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~---~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~-- 384 (550)
.+.+..+.|... +.|.||++||++.+.. .|... ...+++.|+++||.|+++|+||+|.+........
T Consensus 49 ~~~~~~~~p~~~-----~~~~vvl~HG~g~~~~---~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~ 120 (328)
T 1qlw_A 49 QMYVRYQIPQRA-----KRYPITLIHGCCLTGM---TWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAV 120 (328)
T ss_dssp CEEEEEEEETTC-----CSSCEEEECCTTCCGG---GGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHH
T ss_pred eEEEEEEccCCC-----CCccEEEEeCCCCCCC---ccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccc
Confidence 466666777642 2366888999865432 23210 0025788999999999999999998765422111
Q ss_pred -----------------------hhccC----C--C-------chHH------------------HHHHHHHHHHcCCCC
Q 008873 385 -----------------------KHNCG----R--I-------DAED------------------QLTGAEWLIKQGLAK 410 (550)
Q Consensus 385 -----------------------~~~~~----~--~-------~~~D------------------~~~~~~~l~~~~~~d 410 (550)
...++ . . .+++ +.+++..+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--- 197 (328)
T 1qlw_A 121 KLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL--- 197 (328)
T ss_dssp HTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH---
T ss_pred cccccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh---
Confidence 00000 0 0 0111 455555555442
Q ss_pred CCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEE
Q 008873 411 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLV 490 (550)
Q Consensus 411 ~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii 490 (550)
+++.++|||+||.+++.++.++|++++++|+.+|... ..+......+++|+|++
T Consensus 198 -~~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~-------------------------~~~~~~~~~~~~PvLii 251 (328)
T 1qlw_A 198 -DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC-------------------------PKPEDVKPLTSIPVLVV 251 (328)
T ss_dssp -TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC-------------------------CCGGGCGGGTTSCEEEE
T ss_pred -CCceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC-------------------------CCHHHHhhccCCCEEEE
Confidence 3899999999999999999999999999999987531 00111223356899999
Q ss_pred ecCCCCCCCh-----HHHHHHHHHHHHcCCCeEEEEcCCCC-----CcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 491 HGMIDENVHF-----RHTARLINALVAARKPYEILIFPDER-----HMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 491 ~G~~D~~v~~-----~~~~~~~~~l~~~~~~~~~~~~p~~~-----H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
||++|..+|+ +++.++++++.+.|.+++++++|+++ |.+....+..++.+.+.+||++++
T Consensus 252 ~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~~~~ 321 (328)
T 1qlw_A 252 FGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRNT 321 (328)
T ss_dssp ECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHTC
T ss_pred eccCCccccchhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHHhcc
Confidence 9999999996 99999999999999999999999665 988665557889999999998864
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-21 Score=190.49 Aligned_cols=218 Identities=14% Similarity=0.107 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcee-ec------ccccccch----hHhHHHHhCCcEE
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQL-VC------DSWINTVD----MRAQYLRSKGILV 365 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~-~~------~~~~~~~~----~~~~~l~~~G~~v 365 (550)
..+.+.+++.+|..+.++++.|.+. .++.|+||++||.++... .. ..+...+. .+++.|+++||+|
T Consensus 86 ~~e~v~~~~~~g~~l~~~l~~P~~~---~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~~V 162 (391)
T 3g8y_A 86 ILEKWEFYPFPKSVSTFLVLKPEHL---KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVA 162 (391)
T ss_dssp EEEEEEECCSTTCCEEEEEEEETTC---CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTCEE
T ss_pred EEEEEEEEcCCCCEEEEEEEeCCCC---CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCCEE
Confidence 3477889888999999999999763 267899999999655421 00 00101112 4678999999999
Q ss_pred EEECCCCCCCCchhhH--------H-HHh---hccCC----CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHH
Q 008873 366 WKLDNRGTARRGLKFE--------A-SIK---HNCGR----IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 429 (550)
Q Consensus 366 v~~d~rG~g~~~~~~~--------~-~~~---~~~~~----~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~ 429 (550)
+++|+||+|.++.... . ... ...+. ....|+.+++++|.+++.+|++||+|+|+||||++++.+
T Consensus 163 l~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al~~ 242 (391)
T 3g8y_A 163 VAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVL 242 (391)
T ss_dssp EECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHHHH
T ss_pred EEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHHHH
Confidence 9999999987764311 0 110 11121 123799999999999999999999999999999999998
Q ss_pred HhhCCCeeEEEEEcCCcCCcccccchhhh--hccCCCC------CCccccccCChhhhhhcCC-CcEEEEecCCCCCCCh
Q 008873 430 LARFPDVFQCAVSGAPVTSWDGYDTFYTE--KYMGLPS------EDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHF 500 (550)
Q Consensus 430 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~g~~~------~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~ 500 (550)
+.. +++++++|+.+++..+......... ...+.+. .-+..+...+....+..+. .|+||+||+.|..+
T Consensus 243 a~~-~~~i~a~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~d~~~~~~~~ap~P~LiihG~~D~~v-- 319 (391)
T 3g8y_A 243 GVL-DKDIYAFVYNDFLCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNFPDVVASLAPRPIIFTEGGLDRDF-- 319 (391)
T ss_dssp HHH-CTTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGCCTTGGGTCCHHHHHHTTTTSCEEECSCBCHHHH--
T ss_pred HHc-CCceeEEEEccCCCCcccchhhcccccccccccccccHHHhCccHHhhCCHHHHHHhhcCCCEEEEcCCccHHH--
Confidence 886 4567888888877766322111100 0000000 0011122233333344443 69999999999876
Q ss_pred HHHHHHHHHHHHcCC--CeEEEEcC
Q 008873 501 RHTARLINALVAARK--PYEILIFP 523 (550)
Q Consensus 501 ~~~~~~~~~l~~~~~--~~~~~~~p 523 (550)
....+ +++..+. ++++..+|
T Consensus 320 ~~~~~---~~~~~g~~~~~~~~~~~ 341 (391)
T 3g8y_A 320 RLVQS---AYAASGKPENAEFHHYP 341 (391)
T ss_dssp HHHHH---HHHHTTCGGGEEECCCG
T ss_pred HHHHH---HHHHcCCCceeEEEEeC
Confidence 33333 3444454 44554444
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-21 Score=171.39 Aligned_cols=193 Identities=15% Similarity=0.048 Sum_probs=141.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchh--HhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM--RAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~--~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
+|..+++..+.|.+. ++.|+||++||+++... .|.. ..+.|+++||.|+++|+||.|.+........
T Consensus 15 ~g~~l~~~~~~p~~~----~~~~~vv~~hG~~~~~~-------~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~ 83 (210)
T 1imj_A 15 QGQALFFREALPGSG----QARFSVLLLHGIRFSSE-------TWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAP 83 (210)
T ss_dssp TTEEECEEEEECSSS----CCSCEEEECCCTTCCHH-------HHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSCCSSC
T ss_pred CCeEEEEEEeCCCCC----CCCceEEEECCCCCccc-------eeecchhHHHHHHCCCeEEEecCCCCCCCCCCCCcch
Confidence 788999999988653 35689999999876543 2232 3678899999999999999986654321100
Q ss_pred hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCC
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 464 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~ 464 (550)
.... ...+|+...++.+ +.++++++|||+||.+++.++.++|++++++++.+|.....
T Consensus 84 ~~~~--~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~-------------- 141 (210)
T 1imj_A 84 IGEL--APGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK-------------- 141 (210)
T ss_dssp TTSC--CCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG--------------
T ss_pred hhhc--chHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc--------------
Confidence 0110 0125555555554 34689999999999999999999999999999998864311
Q ss_pred CCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHH
Q 008873 465 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWE 544 (550)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~ 544 (550)
.....+.++++|+|+++|++|. ++++...++ +. -.+.++.++++++|.+. .++...+.+.+.+
T Consensus 142 ----------~~~~~~~~~~~p~l~i~g~~D~-~~~~~~~~~-~~----~~~~~~~~~~~~~H~~~-~~~~~~~~~~i~~ 204 (210)
T 1imj_A 142 ----------INAANYASVKTPALIVYGDQDP-MGQTSFEHL-KQ----LPNHRVLIMKGAGHPCY-LDKPEEWHTGLLD 204 (210)
T ss_dssp ----------SCHHHHHTCCSCEEEEEETTCH-HHHHHHHHH-TT----SSSEEEEEETTCCTTHH-HHCHHHHHHHHHH
T ss_pred ----------ccchhhhhCCCCEEEEEcCccc-CCHHHHHHH-hh----CCCCCEEEecCCCcchh-hcCHHHHHHHHHH
Confidence 1234567788999999999999 988777666 43 34689999999999863 3446678889999
Q ss_pred HHHHh
Q 008873 545 FIERT 549 (550)
Q Consensus 545 fl~~~ 549 (550)
||++.
T Consensus 205 fl~~~ 209 (210)
T 1imj_A 205 FLQGL 209 (210)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 99763
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=172.92 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=135.1
Q ss_pred EEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCc
Q 008873 313 GALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID 392 (550)
Q Consensus 313 ~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~ 392 (550)
+.+|.|.....+.++.|+||++||++++.. .+..+++.|+++||.|+++|+|+++ .
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~ 89 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAGPS-------TYAGLLSHWASHGFVVAAAETSNAG-----------------T 89 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCCGG-------GGHHHHHHHHHHTCEEEEECCSCCT-----------------T
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCCch-------hHHHHHHHHHhCCeEEEEecCCCCc-----------------c
Confidence 677888653111137899999999876532 3455678899999999999999641 1
Q ss_pred hHHHHHHHHHHHHc---------CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCC
Q 008873 393 AEDQLTGAEWLIKQ---------GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGL 463 (550)
Q Consensus 393 ~~D~~~~~~~l~~~---------~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 463 (550)
..|+..+++++.+. ..+|.++|+|+||||||++++.++ .+.+++++++.+|.... .
T Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~-------------~ 154 (258)
T 2fx5_A 90 GREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG-------------L 154 (258)
T ss_dssp SHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSS-------------T
T ss_pred HHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccc-------------c
Confidence 34555566665542 346778999999999999999888 35678888887764320 0
Q ss_pred CCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHH-HHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHH
Q 008873 464 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 542 (550)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~ 542 (550)
+. ....+.++++|+|++||++|..+|+.. +.+++++ .+.+++++++++++|.+.. +....+.+.+
T Consensus 155 ~~----------~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~-~~~~~~~~~i 220 (258)
T 2fx5_A 155 GH----------DSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERRYVSHFEPV-GSGGAYRGPS 220 (258)
T ss_dssp TC----------CGGGGGCCSSCEEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEESSCCTTSST-TTCGGGHHHH
T ss_pred cc----------chhhhccCCCCEEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEECCCCCcccc-chHHHHHHHH
Confidence 00 123567788999999999999999986 7777665 3567999999999998743 3345678889
Q ss_pred HHHHHHhC
Q 008873 543 WEFIERTL 550 (550)
Q Consensus 543 ~~fl~~~l 550 (550)
.+||+++|
T Consensus 221 ~~fl~~~l 228 (258)
T 2fx5_A 221 TAWFRFQL 228 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998653
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=195.02 Aligned_cols=235 Identities=17% Similarity=0.177 Sum_probs=167.1
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHh-HHHHhCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~-~~l~~~G~~vv~~d~rG~g~ 375 (550)
..+.+.++..||..|.+.++.|.+. +++|+||++||......... .+...+ +.|+++||+|+.+|+||+|+
T Consensus 8 ~~~~v~i~~~DG~~L~~~~~~P~~~----~~~P~vv~~~~~g~~~~~~~----~y~~~~~~~la~~Gy~vv~~D~RG~G~ 79 (587)
T 3i2k_A 8 VASNVMVPMRDGVRLAVDLYRPDAD----GPVPVLLVRNPYDKFDVFAW----STQSTNWLEFVRDGYAVVIQDTRGLFA 79 (587)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECCS----SCEEEEEEEESSCTTCHHHH----HTTTCCTHHHHHTTCEEEEEECTTSTT
T ss_pred EEEEEEEECCCCCEEEEEEEECCCC----CCeeEEEEECCcCCCccccc----cchhhHHHHHHHCCCEEEEEcCCCCCC
Confidence 3467899999999999999999753 57899999987544321100 111124 88999999999999999999
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc-CCccc---
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV-TSWDG--- 451 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~-~~~~~--- 451 (550)
++..+.. + ..+.+|+.++++||.++++.+ .+|+++|+||||++++.++.++++.++|+|+.++. .|+..
T Consensus 80 S~g~~~~-----~-~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~ 152 (587)
T 3i2k_A 80 SEGEFVP-----H-VDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWY 152 (587)
T ss_dssp CCSCCCT-----T-TTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCS
T ss_pred CCCcccc-----c-cchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccccccee
Confidence 9876543 1 246899999999999887766 79999999999999999999989999999999988 66421
Q ss_pred c-----cc----hhhh--------------------------------hcc-CCCC---------------------CCc
Q 008873 452 Y-----DT----FYTE--------------------------------KYM-GLPS---------------------EDP 468 (550)
Q Consensus 452 ~-----~~----~~~~--------------------------------~~~-g~~~---------------------~~~ 468 (550)
+ .. .|.. .++ ..+. ...
T Consensus 153 ~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 232 (587)
T 3i2k_A 153 GPGGALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDND 232 (587)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCCSCC
T ss_pred ecCCccccchHHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCCCCC
Confidence 0 00 0100 000 0110 012
Q ss_pred cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC---------CCCcHH---
Q 008873 469 VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR---------RHRDRI--- 536 (550)
Q Consensus 469 ~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~---------~~~~~~--- 536 (550)
+.|...++...+++|++|+|+++|..|..+ ..+.+++++|...++ ..+++-|. .|... .+....
T Consensus 233 ~yw~~~s~~~~l~~I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~~~~~~~~ 308 (587)
T 3i2k_A 233 ESWQSISLFERLGGLATPALITAGWYDGFV--GESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGIAATYPIQ 308 (587)
T ss_dssp HHHHTTCCHHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCGGGSCCHH
T ss_pred hHHhcCChhhhhccCCCCEEEEccCCCccc--hHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCCccccccc
Confidence 334556777789999999999999999764 467889999976654 35666554 36521 111112
Q ss_pred HHHHHHHHHHHHhC
Q 008873 537 YMEERIWEFIERTL 550 (550)
Q Consensus 537 ~~~~~~~~fl~~~l 550 (550)
+..+.+++||++||
T Consensus 309 ~~~~~~~~wFD~~L 322 (587)
T 3i2k_A 309 EATTMHKAFFDRHL 322 (587)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHh
Confidence 33488999999886
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-20 Score=171.76 Aligned_cols=203 Identities=18% Similarity=0.230 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+++.. .|....+.|+++||.|+++|+||+|.+...........+ .+|+.++++++.+.+
T Consensus 17 ~~vvllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~GhG~s~~~~~~~~~~~~----~~d~~~~~~~l~~~~- 84 (247)
T 1tqh_A 17 RAVLLLHGFTGNSA-------DVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDDW----WQDVMNGYEFLKNKG- 84 (247)
T ss_dssp CEEEEECCTTCCTH-------HHHHHHHHHHHTTCEEEECCCTTSSSCHHHHTTCCHHHH----HHHHHHHHHHHHHHT-
T ss_pred cEEEEECCCCCChH-------HHHHHHHHHHHCCCEEEecccCCCCCCHHHhcCCCHHHH----HHHHHHHHHHHHHcC-
Confidence 67889999765532 244467888899999999999999965422110001111 345666666776553
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcC-CcCCccc--ccc---hhhhh------------------ccCCC
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA-PVTSWDG--YDT---FYTEK------------------YMGLP 464 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~-~~~~~~~--~~~---~~~~~------------------~~g~~ 464 (550)
.+++.|+||||||.+++.++.++| ++++|+.+ |...... ... .+... +...+
T Consensus 85 --~~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (247)
T 1tqh_A 85 --YEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTP 160 (247)
T ss_dssp --CCCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSC
T ss_pred --CCeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCCC
Confidence 358999999999999999999988 67776543 3321100 000 00000 00000
Q ss_pred CCCcccccc--CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHH
Q 008873 465 SEDPVGYEY--SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERI 542 (550)
Q Consensus 465 ~~~~~~~~~--~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~ 542 (550)
......+.. .+....+.++++|+|+++|++|..+|+..+.++++.+. +.+.+++++|+++|.+...+....+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~e~~~~~~~~~i 238 (247)
T 1tqh_A 161 MKTLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIE--SPVKQIKWYEQSGHVITLDQEKDQLHEDI 238 (247)
T ss_dssp CTTHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCC--CSSEEEEEETTCCSSGGGSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCEEEEecCCCCCCCcchHHHHHHhcC--CCceEEEEeCCCceeeccCccHHHHHHHH
Confidence 000000000 11234567889999999999999999999888877652 23479999999999975544567889999
Q ss_pred HHHHHHh
Q 008873 543 WEFIERT 549 (550)
Q Consensus 543 ~~fl~~~ 549 (550)
.+||++.
T Consensus 239 ~~Fl~~~ 245 (247)
T 1tqh_A 239 YAFLESL 245 (247)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9999863
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=169.47 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=139.5
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
+++.+|..+++..+. +.|.||++||.+.+.. .|......|+++||.|+++|+||+|.+....
T Consensus 3 ~~~~~g~~l~y~~~g---------~g~~vvllHG~~~~~~-------~w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-- 64 (274)
T 1a8q_A 3 CTTRDGVEIFYKDWG---------QGRPVVFIHGWPLNGD-------AWQDQLKAVVDAGYRGIAHDRRGHGHSTPVW-- 64 (274)
T ss_dssp EECTTSCEEEEEEEC---------SSSEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCS--
T ss_pred EEccCCCEEEEEecC---------CCceEEEECCCcchHH-------HHHHHHHHHHhCCCeEEEEcCCCCCCCCCCC--
Confidence 566788888776552 1257899999766532 3455677889999999999999999875321
Q ss_pred HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCcc--------ccc
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWD--------GYD 453 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~~--------~~~ 453 (550)
....++++.+.+..+.+.- +.+++.|+||||||.+++.++.++ |++++++|+.++..... ...
T Consensus 65 ------~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 136 (274)
T 1a8q_A 65 ------DGYDFDTFADDLNDLLTDL--DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVP 136 (274)
T ss_dssp ------SCCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred ------CCCcHHHHHHHHHHHHHHc--CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccch
Confidence 1123444444444433331 346899999999999998877665 89999999987643210 000
Q ss_pred -chh------------------hhhccCCC--C--CCcc---c-------------------cccCChhhhhhcCCCcEE
Q 008873 454 -TFY------------------TEKYMGLP--S--EDPV---G-------------------YEYSSVMHHVHKMKGKLL 488 (550)
Q Consensus 454 -~~~------------------~~~~~g~~--~--~~~~---~-------------------~~~~~~~~~~~~i~~P~l 488 (550)
..+ ...+.+.. . ...+ . +...+....+.++++|+|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 216 (274)
T 1a8q_A 137 DEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTL 216 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEE
T ss_pred HHHHHHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCCEE
Confidence 000 00111110 0 0000 0 001122345678899999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC-CcHHHHHHHHHHHHH
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH-RDRIYMEERIWEFIE 547 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~-~~~~~~~~~~~~fl~ 547 (550)
+++|++|..+|+....+...++ ..+.+++++++++|.+... ++...+.+.+.+||+
T Consensus 217 ii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 217 VVHGDDDQVVPIDATGRKSAQI---IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred EEecCcCCCCCcHHHHHHHHhh---CCCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 9999999999988555444333 3468999999999987432 277888999999985
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=181.35 Aligned_cols=244 Identities=15% Similarity=0.176 Sum_probs=154.5
Q ss_pred CCeEEEEEcCC--C--cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccc-cchhHhHHHH-hCCcEEEEECC
Q 008873 297 PPDIVQIQAND--G--TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN-TVDMRAQYLR-SKGILVWKLDN 370 (550)
Q Consensus 297 ~~~~~~~~~~~--g--~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~-~~~~~~~~l~-~~G~~vv~~d~ 370 (550)
+..++.|.+.| | ..+.++++.|.+. .++.|+|++.||............. ....+...|+ ++||+|+++|+
T Consensus 42 ~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~---~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~D~ 118 (377)
T 4ezi_A 42 QLYKINYKTQSPDGNLTIASGLVAMPIHP---VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDY 118 (377)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEESSC---SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEECC
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEECCCC---CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEeCC
Confidence 34567777755 4 5688999999874 2578999999997642111001000 0112355677 99999999999
Q ss_pred CCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCC----C-eeEEEEEcC
Q 008873 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFP----D-VFQCAVSGA 444 (550)
Q Consensus 371 rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~----~-~~~~~v~~~ 444 (550)
||.|.++...............+.|.+.++..+.+. +..+.++|+++|||+||+++++++..+| + .++++++.+
T Consensus 119 rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~~~~ 198 (377)
T 4ezi_A 119 LGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVAPGS 198 (377)
T ss_dssp TTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEEEES
T ss_pred CCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEEecC
Confidence 999987641111000000011234555555444443 4346789999999999999999987643 3 578999988
Q ss_pred CcCCcccccc--------------------------hhh--hhccC-----------------------CCCCCcccc-c
Q 008873 445 PVTSWDGYDT--------------------------FYT--EKYMG-----------------------LPSEDPVGY-E 472 (550)
Q Consensus 445 ~~~~~~~~~~--------------------------~~~--~~~~g-----------------------~~~~~~~~~-~ 472 (550)
++.|...... .|. +.++. .+ .+...+ .
T Consensus 199 ~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 277 (377)
T 4ezi_A 199 APYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALP-QDPLLIFQ 277 (377)
T ss_dssp CCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSC-SSGGGGBC
T ss_pred cccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccC-CCHHHHhc
Confidence 8877431100 000 00000 00 000000 0
Q ss_pred c---------CCh-hhh--------hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC--CCCcCCCC
Q 008873 473 Y---------SSV-MHH--------VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRRH 532 (550)
Q Consensus 473 ~---------~~~-~~~--------~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~--~~H~~~~~ 532 (550)
. ..| +.. -.++++|+||+||+.|.+||+.++.++++++++.|. ++++.||+ .+|...
T Consensus 278 ~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~~~~~~H~~~-- 354 (377)
T 4ezi_A 278 PKFSNGIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSVSDALDHVQA-- 354 (377)
T ss_dssp HHHHHHHHTTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEESCSSCCTTTT--
T ss_pred hhhhhhcccccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcCCCCCCccCh--
Confidence 0 111 110 113568999999999999999999999999999999 99999999 899763
Q ss_pred CcHHHHHHHHHHHHHHh
Q 008873 533 RDRIYMEERIWEFIERT 549 (550)
Q Consensus 533 ~~~~~~~~~~~~fl~~~ 549 (550)
.......+++||+++
T Consensus 355 --~~~~~~~~~~wl~~~ 369 (377)
T 4ezi_A 355 --HPFVLKEQVDFFKQF 369 (377)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHh
Confidence 345678899999876
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=176.10 Aligned_cols=233 Identities=12% Similarity=0.103 Sum_probs=152.9
Q ss_pred cCCCCCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC---cEEEE
Q 008873 292 RLQLEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG---ILVWK 367 (550)
Q Consensus 292 ~~~~~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G---~~vv~ 367 (550)
...++..+.+++.+. .|..+.+++|.|++... .+++|+|+++||++..... ..+ .....++.++.| ++||+
T Consensus 12 ~~~~~~~~~~~~~s~~~g~~~~~~v~~P~~~~~-~~~~Pvl~~lhG~~~~~~~-~~~---~~~~~~~~~~~g~~~~ivV~ 86 (275)
T 2qm0_A 12 QIITSNTEQWKMYSKLEGKEYQIHISKPKQPAP-DSGYPVIYVLDGNAFFQTF-HEA---VKIQSVRAEKTGVSPAIIVG 86 (275)
T ss_dssp CCCCTTEEEEEEECTTTCCEEEEEEECCSSCCC-TTCEEEEEEESHHHHHHHH-HHH---HHHHGGGHHHHCCCCCEEEE
T ss_pred ceecCCceEEEEEecCCCCEEEEEEECCCCCCC-CCCccEEEEecChHHHHHH-HHH---HHHHhhcchhcCCCCeEEEE
Confidence 355778899999987 68899999999988643 3689999999997542211 011 011112234567 99999
Q ss_pred ECCCCCCCCchhhHHHHhh------------------ccCC-CchHHHH--HHHHHHHHcCCCCCCceEEEEechhHHHH
Q 008873 368 LDNRGTARRGLKFEASIKH------------------NCGR-IDAEDQL--TGAEWLIKQGLAKVGHIGLYGWSYGGYLS 426 (550)
Q Consensus 368 ~d~rG~g~~~~~~~~~~~~------------------~~~~-~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~~a 426 (550)
+|+++...++......... ..+. ....+.+ +.+.++.++..+|+++++|+||||||+++
T Consensus 87 i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a 166 (275)
T 2qm0_A 87 VGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFA 166 (275)
T ss_dssp EECSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHH
T ss_pred ECCCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHH
Confidence 9999754322111100000 0010 0122222 33455555556788999999999999999
Q ss_pred HHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHH
Q 008873 427 AITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 427 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~ 506 (550)
++++.++|++|+++++.+|...|.... .... .+.+... ........|++++||+.|..++..++.++
T Consensus 167 ~~~~~~~p~~f~~~~~~s~~~~~~~~~------~~~~----~~~~~~~---~~~~~~~~~~~l~~G~~D~~~~~~~~~~~ 233 (275)
T 2qm0_A 167 LHILFTNLNAFQNYFISSPSIWWNNKS------VLEK----EENLIIE---LNNAKFETGVFLTVGSLEREHMVVGANEL 233 (275)
T ss_dssp HHHHHHCGGGCSEEEEESCCTTHHHHG------GGGG----TTHHHHH---HHTCSSCEEEEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHhCchhhceeEEeCceeeeChHH------HHHH----HHHHHhh---hcccCCCceEEEEeCCcccchhhHHHHHH
Confidence 999999999999999999986542110 0000 0001000 01234557999999999999999999999
Q ss_pred HHHH---HHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 507 INAL---VAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 507 ~~~l---~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
+++| ++.|.++++.++|+++|+.. ....+...++||
T Consensus 234 ~~~L~~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 234 SERLLQVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp HHHHHHCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred HHHHHhcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 9999 45678899999999999752 223345566776
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=173.03 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=146.3
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~ 376 (550)
.+...++. ++..+.++.+.+. +.|+||++||++++.. . |...+..|++ ||.|+++|+||+ |.+
T Consensus 45 ~~~~~v~~-~~~~~~~~~~g~~-------~~~~vv~lHG~~~~~~---~----~~~~~~~L~~-g~~vi~~D~~G~gG~s 108 (306)
T 2r11_A 45 CKSFYIST-RFGQTHVIASGPE-------DAPPLVLLHGALFSST---M----WYPNIADWSS-KYRTYAVDIIGDKNKS 108 (306)
T ss_dssp CEEEEECC-TTEEEEEEEESCT-------TSCEEEEECCTTTCGG---G----GTTTHHHHHH-HSEEEEECCTTSSSSC
T ss_pred cceEEEec-CCceEEEEeeCCC-------CCCeEEEECCCCCCHH---H----HHHHHHHHhc-CCEEEEecCCCCCCCC
Confidence 35555555 4556777665432 2478999999876543 2 3334677777 999999999999 554
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch-
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF- 455 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 455 (550)
... .......++.+.+..+.+.- +.+++.|+|||+||.+++.++.++|++++++|+.+|..........
T Consensus 109 ~~~--------~~~~~~~~~~~~l~~~l~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~ 178 (306)
T 2r11_A 109 IPE--------NVSGTRTDYANWLLDVFDNL--GIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDF 178 (306)
T ss_dssp EEC--------SCCCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHH
T ss_pred CCC--------CCCCCHHHHHHHHHHHHHhc--CCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHH
Confidence 321 11233555555555555442 3468999999999999999999999999999999987653211100
Q ss_pred ---------------hhhhccCCCCCC-----------------cccc-------ccCChhhhhhcCCCcEEEEecCCCC
Q 008873 456 ---------------YTEKYMGLPSED-----------------PVGY-------EYSSVMHHVHKMKGKLLLVHGMIDE 496 (550)
Q Consensus 456 ---------------~~~~~~g~~~~~-----------------~~~~-------~~~~~~~~~~~i~~P~lii~G~~D~ 496 (550)
+.....+..... ...+ ........+.++++|+|+++|++|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~ 258 (306)
T 2r11_A 179 YKYALGLTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEV 258 (306)
T ss_dssp HHHHHTTTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEEEEETTCC
T ss_pred HHHHhHHHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEEEEeCCCc
Confidence 000000000000 0001 0112345678899999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 497 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 497 ~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.+|+..+.++++++ ..++++.++|+++|.+ ..++...+.+.+.+||++
T Consensus 259 ~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fl~~ 306 (306)
T 2r11_A 259 IYDPHSALHRASSF---VPDIEAEVIKNAGHVL-SMEQPTYVNERVMRFFNA 306 (306)
T ss_dssp SSCHHHHHHHHHHH---STTCEEEEETTCCTTH-HHHSHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHH---CCCCEEEEeCCCCCCC-cccCHHHHHHHHHHHHhC
Confidence 99998887666544 3568999999999986 335567888999999853
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-20 Score=176.55 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=146.4
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+...++. +|..+.+....+ .|+||++||.++... .|..+++.|++ ||.|+++|+||+|.+..
T Consensus 49 ~~~~~~~-~~~~~~~~~~g~---------~p~vv~lhG~~~~~~-------~~~~~~~~L~~-~~~v~~~D~~G~G~S~~ 110 (314)
T 3kxp_A 49 ISRRVDI-GRITLNVREKGS---------GPLMLFFHGITSNSA-------VFEPLMIRLSD-RFTTIAVDQRGHGLSDK 110 (314)
T ss_dssp EEEEEEC-SSCEEEEEEECC---------SSEEEEECCTTCCGG-------GGHHHHHTTTT-TSEEEEECCTTSTTSCC
T ss_pred ceeeEEE-CCEEEEEEecCC---------CCEEEEECCCCCCHH-------HHHHHHHHHHc-CCeEEEEeCCCcCCCCC
Confidence 3444443 677777765533 378999999876532 23445666666 69999999999998752
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc----
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT---- 454 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 454 (550)
. ......+++.+.+..+.+.- +.++++|+|||+||++++.++.++|++++++|+.+|.........
T Consensus 111 ~--------~~~~~~~~~~~dl~~~l~~l--~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 180 (314)
T 3kxp_A 111 P--------ETGYEANDYADDIAGLIRTL--ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALE 180 (314)
T ss_dssp C--------SSCCSHHHHHHHHHHHHHHH--TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHH
T ss_pred C--------CCCCCHHHHHHHHHHHHHHh--CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHH
Confidence 1 12234556666555555442 336899999999999999999999999999999987654321100
Q ss_pred ------------------hhhhhccCCCCCCccc------------c---------------ccCChhhhhhcCCCcEEE
Q 008873 455 ------------------FYTEKYMGLPSEDPVG------------Y---------------EYSSVMHHVHKMKGKLLL 489 (550)
Q Consensus 455 ------------------~~~~~~~g~~~~~~~~------------~---------------~~~~~~~~~~~i~~P~li 489 (550)
.+.......+...... + ...+....+.++++|+|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Li 260 (314)
T 3kxp_A 181 ARVNAGSQLFEDIKAVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVLI 260 (314)
T ss_dssp HHTTTTCSCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEEE
T ss_pred HHhhhchhhhcCHHHHHHHHHhhcccCchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEEE
Confidence 0000000000000000 0 000344567789999999
Q ss_pred EecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 490 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 490 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++|++|..+|++.+.++.+.+ .+++++++|+++|.+ ..++...+.+.+.+||++
T Consensus 261 i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~g~gH~~-~~e~~~~~~~~i~~fl~~ 314 (314)
T 3kxp_A 261 VRGESSKLVSAAALAKTSRLR----PDLPVVVVPGADHYV-NEVSPEITLKAITNFIDA 314 (314)
T ss_dssp EEETTCSSSCHHHHHHHHHHC----TTSCEEEETTCCSCH-HHHCHHHHHHHHHHHHHC
T ss_pred EecCCCccCCHHHHHHHHHhC----CCceEEEcCCCCCcc-hhhCHHHHHHHHHHHHhC
Confidence 999999999999888887765 457899999999987 445567889999999874
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=186.11 Aligned_cols=220 Identities=12% Similarity=0.046 Sum_probs=137.9
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceee-----------cccccccchhHhHHHHhCCcEE
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV-----------CDSWINTVDMRAQYLRSKGILV 365 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~-----------~~~~~~~~~~~~~~l~~~G~~v 365 (550)
..+.+.+++.+|..+.++++.|.+. .+++|+||++||+++.... .+.|......+++.|+++||+|
T Consensus 91 ~~e~v~~~~~~g~~l~~~l~~P~~~---~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~Gy~V 167 (398)
T 3nuz_A 91 RLEKWEFYPLPKCVSTFLVLIPDNI---NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIA 167 (398)
T ss_dssp EEEEEEECCSTTBCEEEEEEEESSC---CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTTCEE
T ss_pred EEEEEEEEcCCCcEEEEEEEeCCCC---CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCCCEE
Confidence 4577889999999999999999863 2688999999997664320 0011111113688999999999
Q ss_pred EEECCCCCCCCchhhHH------------HHh----hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHH
Q 008873 366 WKLDNRGTARRGLKFEA------------SIK----HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAIT 429 (550)
Q Consensus 366 v~~d~rG~g~~~~~~~~------------~~~----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~ 429 (550)
+++|+||+|.++..... ... ..++.....|+.+++++|.+++.+|++||+|+||||||++++.+
T Consensus 168 l~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a~~~ 247 (398)
T 3nuz_A 168 VAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVL 247 (398)
T ss_dssp EEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHHHHH
T ss_pred EEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHHHHH
Confidence 99999999887643210 000 01111234799999999999999999999999999999999998
Q ss_pred HhhCCCeeEEEEEcCCcCCcccccchhhh-hccC-CCC------CCccccccCChhhhhhcC-CCcEEEEecCCCCCCCh
Q 008873 430 LARFPDVFQCAVSGAPVTSWDGYDTFYTE-KYMG-LPS------EDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHF 500 (550)
Q Consensus 430 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~g-~~~------~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~ 500 (550)
++.. ++++++|+.+++..+......... ...+ .+. ..+......+....+..+ ..|+||+||+.|..+
T Consensus 248 aa~~-~~i~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~ap~PlLii~G~~D~~v-- 324 (398)
T 3nuz_A 248 GTLD-TSIYAFVYNDFLCQTQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDIVAALAPRPIILTEGGLDRDL-- 324 (398)
T ss_dssp HHHC-TTCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSSCGGGCCTTHHHHCCHHHHHHHTTTSCEEECSCBCHHHH--
T ss_pred HhcC-CcEEEEEEecccccchhhhhhhccccccccccCCccHHHhcchHhhhCCHHHHHHhhCCCcEEEeeCCchHHH--
Confidence 8864 566888887665543221111110 0000 000 000111112222223333 359999999999543
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcC
Q 008873 501 RHTARLINALVAARKPYEILIFP 523 (550)
Q Consensus 501 ~~~~~~~~~l~~~~~~~~~~~~p 523 (550)
.+..++++++. ...++++.+||
T Consensus 325 ~~~~~~y~~~g-~~~~~~~~~~p 346 (398)
T 3nuz_A 325 DLVRKAYAIVG-TPDNVKIYHYK 346 (398)
T ss_dssp HHHHHHHHHHT-CTTSEEECCCG
T ss_pred HHHHHHHHHcC-CCcceEEEEeC
Confidence 44455554431 12456777666
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=168.20 Aligned_cols=213 Identities=18% Similarity=0.159 Sum_probs=137.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|..+++....+ + .|.||++||.+++.. . .|....+.|+++||.|+++|+||+|.+.....
T Consensus 10 ~g~~l~~~~~g~-------~-~~~vvllHG~~~~~~--~----~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~----- 70 (254)
T 2ocg_A 10 NGVQLHYQQTGE-------G-DHAVLLLPGMLGSGE--T----DFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDR----- 70 (254)
T ss_dssp TTEEEEEEEEEC-------C-SEEEEEECCTTCCHH--H----HCHHHHHHSCTTTEEEEEECCTTSTTCCSSCC-----
T ss_pred CCEEEEEEEecC-------C-CCeEEEECCCCCCCc--c----chHHHHHHHhhCCCeEEEECCCCCCCCCCCCC-----
Confidence 677777665532 1 267889999765411 1 23445778888999999999999998753211
Q ss_pred ccCCC-chHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc----------ch
Q 008873 387 NCGRI-DAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------TF 455 (550)
Q Consensus 387 ~~~~~-~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~ 455 (550)
.+... ..+++.++++++.+. +.+++.|+||||||.+++.++.++|++++++|+.++........ ..
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 147 (254)
T 2ocg_A 71 DFPADFFERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSK 147 (254)
T ss_dssp CCCTTHHHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGG
T ss_pred CCChHHHHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHH
Confidence 11100 023344444444443 34689999999999999999999999999999987743211000 00
Q ss_pred hhhh-------ccCCC-----CC----C-ccccc---cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 456 YTEK-------YMGLP-----SE----D-PVGYE---YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 456 ~~~~-------~~g~~-----~~----~-~~~~~---~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
+... ..+.. +. . ...+. .......+.++++|+|+++|++|..+|+..+..+.+.+ .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~----~ 223 (254)
T 2ocg_A 148 WSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV----K 223 (254)
T ss_dssp SCHHHHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHS----T
T ss_pred HHHHhHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCCHHHHHHHHHhC----C
Confidence 0000 00000 00 0 00000 01123456788999999999999999999887776654 3
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
+.++.++|+++|.+. .++...+.+.+.+||
T Consensus 224 ~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 224 GSRLHLMPEGKHNLH-LRFADEFNKLAEDFL 253 (254)
T ss_dssp TCEEEEETTCCTTHH-HHTHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCchh-hhCHHHHHHHHHHHh
Confidence 568999999999873 356778888898887
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=171.09 Aligned_cols=214 Identities=17% Similarity=0.213 Sum_probs=136.6
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
...+|..+++.... +-|.||++||.+.+.. . |......|+++||.|+++|+||+|.+.....
T Consensus 12 ~~~~g~~l~y~~~G---------~g~~vvllHG~~~~~~---~----w~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-- 73 (281)
T 3fob_A 12 ENQAPIEIYYEDHG---------TGKPVVLIHGWPLSGR---S----WEYQVPALVEAGYRVITYDRRGFGKSSQPWE-- 73 (281)
T ss_dssp ETTEEEEEEEEEES---------SSEEEEEECCTTCCGG---G----GTTTHHHHHHTTEEEEEECCTTSTTSCCCSS--
T ss_pred CCCCceEEEEEECC---------CCCeEEEECCCCCcHH---H----HHHHHHHHHhCCCEEEEeCCCCCCCCCCCcc--
Confidence 34566777666542 1256788999876643 2 3445678889999999999999998764321
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh-CCCeeEEEEEcCCcCCcc-------c--cc
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWD-------G--YD 453 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~-~~~~~~~~v~~~~~~~~~-------~--~~ 453 (550)
...++++.+.+..+.+.- +.+++.|+||||||.+++.+++. .|++++++++.++..... . ..
T Consensus 74 ------~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 145 (281)
T 3fob_A 74 ------GYEYDTFTSDLHQLLEQL--ELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALD 145 (281)
T ss_dssp ------CCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBC
T ss_pred ------ccCHHHHHHHHHHHHHHc--CCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccc
Confidence 223444444444444432 34689999999999877766555 589999999877542210 0 00
Q ss_pred -c------------------hhhhhccCCC--CC-Ccc-----------------------ccccCChhhhhhcCCCcEE
Q 008873 454 -T------------------FYTEKYMGLP--SE-DPV-----------------------GYEYSSVMHHVHKMKGKLL 488 (550)
Q Consensus 454 -~------------------~~~~~~~g~~--~~-~~~-----------------------~~~~~~~~~~~~~i~~P~l 488 (550)
. .+...+.... .. ..+ .+...+....+.++++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~L 225 (281)
T 3fob_A 146 DATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTL 225 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEE
T ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCCEE
Confidence 0 0000111110 00 000 0011122345678899999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+++|++|..+|++.+.+...+. -.+.++.+++++||.+ ..++...+.+.+.+||+
T Consensus 226 ii~G~~D~~~p~~~~~~~~~~~---~p~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 226 IIHGDSDATVPFEYSGKLTHEA---IPNSKVALIKGGPHGL-NATHAKEFNEALLLFLK 280 (281)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTH-HHHTHHHHHHHHHHHHC
T ss_pred EEecCCCCCcCHHHHHHHHHHh---CCCceEEEeCCCCCch-hhhhHHHHHHHHHHHhh
Confidence 9999999999998764444332 3567999999999987 45677889999999985
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=182.74 Aligned_cols=203 Identities=14% Similarity=0.157 Sum_probs=138.1
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh---------
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK--------- 379 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~--------- 379 (550)
..+++....|... .+++|+||++||+++... .+..+++.|+++||+|+++|+||.|.+...
T Consensus 82 ~~~p~~~~~P~~~---~~~~P~Vv~~HG~~~~~~-------~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~ 151 (383)
T 3d59_A 82 MTTPANWNSPLRP---GEKYPLVVFSHGLGAFRT-------LYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAE 151 (383)
T ss_dssp CEESSEETCCBCC---SSCEEEEEEECCTTCCTT-------TTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHH
T ss_pred eeeccccCCCccc---CCCCCEEEEcCCCCCCch-------HHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccc
Confidence 4455555555432 257899999999876532 345568899999999999999998765310
Q ss_pred -----h--------H-H-HHhhccCCCchHHHHHHHHHHHH--------------------cCCCCCCceEEEEechhHH
Q 008873 380 -----F--------E-A-SIKHNCGRIDAEDQLTGAEWLIK--------------------QGLAKVGHIGLYGWSYGGY 424 (550)
Q Consensus 380 -----~--------~-~-~~~~~~~~~~~~D~~~~~~~l~~--------------------~~~~d~~~i~i~G~S~GG~ 424 (550)
| . . ......-....+|+..+++++.+ +..+|.+||+++|||+||+
T Consensus 152 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~ 231 (383)
T 3d59_A 152 IGDKSWLYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGA 231 (383)
T ss_dssp HTCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHH
T ss_pred cCCceeeeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHH
Confidence 0 0 0 00000000115688899999876 4567889999999999999
Q ss_pred HHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHH
Q 008873 425 LSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTA 504 (550)
Q Consensus 425 ~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~ 504 (550)
+++.++.+.+ +++++|+.+|... +.. ...+.++++|+|++||++|..+ .. .
T Consensus 232 ~a~~~a~~~~-~v~a~v~~~~~~~---------------p~~----------~~~~~~i~~P~Lii~g~~D~~~--~~-~ 282 (383)
T 3d59_A 232 TVIQTLSEDQ-RFRCGIALDAWMF---------------PLG----------DEVYSRIPQPLFFINSEYFQYP--AN-I 282 (383)
T ss_dssp HHHHHHHHCT-TCCEEEEESCCCT---------------TCC----------GGGGGSCCSCEEEEEETTTCCH--HH-H
T ss_pred HHHHHHhhCC-CccEEEEeCCccC---------------CCc----------hhhhccCCCCEEEEecccccch--hh-H
Confidence 9999988765 5899999887421 100 0224678899999999999753 22 3
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCCcCCC------------------CCcH----HHHHHHHHHHHHHhC
Q 008873 505 RLINALVAARKPYEILIFPDERHMPRR------------------HRDR----IYMEERIWEFIERTL 550 (550)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~p~~~H~~~~------------------~~~~----~~~~~~~~~fl~~~l 550 (550)
+..+++.+.+.+.+++++++++|.+.. ..+. ..+.+.+++||+++|
T Consensus 283 ~~~~~l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L 350 (383)
T 3d59_A 283 IKMKKCYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHL 350 (383)
T ss_dssp HHHHTTCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHc
Confidence 334566666788999999999998521 1112 334457999999875
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=171.40 Aligned_cols=204 Identities=12% Similarity=0.066 Sum_probs=138.8
Q ss_pred CCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccccc---ccchhHhHHHHhC----CcEEE
Q 008873 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI---NTVDMRAQYLRSK----GILVW 366 (550)
Q Consensus 294 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~~~~~~~~l~~~----G~~vv 366 (550)
...+.+.+++.+.++ .+.+++|.|.+... .+++|+||++||+++... .|. .......+.|+++ +++||
T Consensus 37 ~~g~~~~~~~~s~~~-~~~~~vy~P~~~~~-~~~~Pvlv~lHG~~~~~~---~~~~~~~~~~~~~~~l~~~g~~~~~ivv 111 (297)
T 1gkl_A 37 QAGRIVKETYTGING-TKSLNVYLPYGYDP-NKKYNIFYLMHGGGENEN---TIFSNDVKLQNILDHAIMNGELEPLIVV 111 (297)
T ss_dssp SCCEEEEEEEEETTE-EEEEEEEECTTCCT-TSCCEEEEEECCTTCCTT---STTSTTTCHHHHHHHHHHTTSSCCEEEE
T ss_pred CCceEEEEEEEcCCC-EEEEEEEeCCCCCC-CCCCCEEEEECCCCCCcc---hhhcccchHHHHHHHHHHcCCCCCEEEE
Confidence 345667888988776 89999999987632 368999999999876532 221 1122345666665 59999
Q ss_pred EECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC------------CCCCceEEEEechhHHHHHHHHhhCC
Q 008873 367 KLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL------------AKVGHIGLYGWSYGGYLSAITLARFP 434 (550)
Q Consensus 367 ~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~------------~d~~~i~i~G~S~GG~~a~~~~~~~~ 434 (550)
++|++|....+..+...+ .+|++ .++.++.. .|+++++|+|+||||+++++++.++|
T Consensus 112 ~pd~~~~~~~~~~~~~~~--------~~~l~---~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p 180 (297)
T 1gkl_A 112 TPTFNGGNCTAQNFYQEF--------RQNVI---PFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCL 180 (297)
T ss_dssp ECCSCSTTCCTTTHHHHH--------HHTHH---HHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHT
T ss_pred EecCcCCccchHHHHHHH--------HHHHH---HHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCc
Confidence 999987543333332211 23344 44444322 36778999999999999999999999
Q ss_pred CeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcC---CCcEEEEecCCCCCCChHHHHHHHHHHH
Q 008873 435 DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHFRHTARLINALV 511 (550)
Q Consensus 435 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~~~~~~~~~~l~ 511 (550)
++|+++++.+|...+.... ... ...+. .......+ ..++++.+|+.|.. ..++.++.++|+
T Consensus 181 ~~f~~~v~~sg~~~~~~~~--~~~---------~~~~~---~~~~~~~~~~~~~~l~~~~G~~D~~--~~~~~~l~~~L~ 244 (297)
T 1gkl_A 181 DYVAYFMPLSGDYWYGNSP--QDK---------ANSIA---EAINRSGLSKREYFVFAATGSEDIA--YANMNPQIEAMK 244 (297)
T ss_dssp TTCCEEEEESCCCCBSSSH--HHH---------HHHHH---HHHHHHTCCTTSCEEEEEEETTCTT--HHHHHHHHHHHH
T ss_pred hhhheeeEeccccccCCcc--chh---------hhHHH---HHHhhccCCcCcEEEEEEeCCCccc--chhHHHHHHHHH
Confidence 9999999999976543210 000 00000 00011223 34677778999975 468889999999
Q ss_pred HcC----------CCeEEEEcCCCCCcC
Q 008873 512 AAR----------KPYEILIFPDERHMP 529 (550)
Q Consensus 512 ~~~----------~~~~~~~~p~~~H~~ 529 (550)
+.+ +++++.++|+++|.+
T Consensus 245 ~~g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 245 ALPHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp TSTTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HcCCccccccccCCceEEEECCCCCcCH
Confidence 988 599999999999975
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-19 Score=166.42 Aligned_cols=209 Identities=15% Similarity=0.127 Sum_probs=143.8
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
.+...+|..+.+....+ .|+||++||.+++.. .|....+.|+ +||.|+++|+||+|.+....
T Consensus 6 ~~~~~~g~~l~~~~~g~---------~~~vv~lHG~~~~~~-------~~~~~~~~l~-~~~~vi~~d~~G~G~S~~~~- 67 (262)
T 3r0v_A 6 TVPSSDGTPIAFERSGS---------GPPVVLVGGALSTRA-------GGAPLAERLA-PHFTVICYDRRGRGDSGDTP- 67 (262)
T ss_dssp EEECTTSCEEEEEEEEC---------SSEEEEECCTTCCGG-------GGHHHHHHHT-TTSEEEEECCTTSTTCCCCS-
T ss_pred eEEcCCCcEEEEEEcCC---------CCcEEEECCCCcChH-------HHHHHHHHHh-cCcEEEEEecCCCcCCCCCC-
Confidence 45667898888776531 267899999876643 2344567777 89999999999999876431
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-----c--
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-----T-- 454 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~-- 454 (550)
...++++.+.+..+.+.- + +++.++|||+||.+++.++.++| +++++++.+|........ .
T Consensus 68 --------~~~~~~~~~~~~~~~~~l--~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~ 135 (262)
T 3r0v_A 68 --------PYAVEREIEDLAAIIDAA--G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQ 135 (262)
T ss_dssp --------SCCHHHHHHHHHHHHHHT--T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHH
T ss_pred --------CCCHHHHHHHHHHHHHhc--C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHH
Confidence 223555555555555442 3 68999999999999999999999 999999998865432110 0
Q ss_pred -----------------hhhhhccCCCCCCccccc------------------------cCChhhhhhcCCCcEEEEecC
Q 008873 455 -----------------FYTEKYMGLPSEDPVGYE------------------------YSSVMHHVHKMKGKLLLVHGM 493 (550)
Q Consensus 455 -----------------~~~~~~~g~~~~~~~~~~------------------------~~~~~~~~~~i~~P~lii~G~ 493 (550)
.+.....+.+....+.+. ...+...+.++++|+|+++|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 215 (262)
T 3r0v_A 136 TRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPTLVMDGG 215 (262)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTSCCCHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCEEEEECT
T ss_pred HHHHHHhhccchhhHHHHHhhcccCCCHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCEEEEeec
Confidence 000000111110000000 112345677889999999999
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 494 IDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 494 ~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+|..+|++...++.+.+ .+.++.++++++|. ++...+.+.+.+||++
T Consensus 216 ~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~----~~p~~~~~~i~~fl~~ 262 (262)
T 3r0v_A 216 ASPAWIRHTAQELADTI----PNARYVTLENQTHT----VAPDAIAPVLVEFFTR 262 (262)
T ss_dssp TCCHHHHHHHHHHHHHS----TTEEEEECCCSSSS----CCHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHhC----CCCeEEEecCCCcc----cCHHHHHHHHHHHHhC
Confidence 99999988888777665 45799999999993 3577888999999863
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=181.87 Aligned_cols=221 Identities=15% Similarity=0.115 Sum_probs=145.9
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
..+.+...+|..+++.... +.|+||++||++.+.. .|..+...|+++||.|+++|+||+|.+..
T Consensus 4 i~~~~~~~dG~~l~y~~~G---------~gp~VV~lHG~~~~~~-------~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~ 67 (456)
T 3vdx_A 4 ITVGQENSTSIDLYYEDHG---------TGVPVVLIHGFPLSGH-------SWERQSAALLDAGYRVITYDRRGFGQSSQ 67 (456)
T ss_dssp EEEEEETTEEEEEEEEEES---------SSEEEEEECCTTCCGG-------GGTTHHHHHHHHTEEEEEECCTTSTTSCC
T ss_pred EeecccccCCeEEEEEEeC---------CCCEEEEECCCCCcHH-------HHHHHHHHHHHCCcEEEEECCCCCCCCCC
Confidence 3455667788888765442 2388999999876543 23446788889999999999999998764
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCcccccc---
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDGYDT--- 454 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~~~~~~--- 454 (550)
........++ .+|+.++++++ +.++++|+|||+||++++.+++.+ |++++++|+.+|.........
T Consensus 68 ~~~~~s~~~~----a~dl~~~l~~l------~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~ 137 (456)
T 3vdx_A 68 PTTGYDYDTF----AADLNTVLETL------DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNP 137 (456)
T ss_dssp CSSCCSHHHH----HHHHHHHHHHH------TCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCC
T ss_pred CCCCCCHHHH----HHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccc
Confidence 3211111111 34445555544 446899999999999998888876 899999999998754211000
Q ss_pred -------------------------hhhhhccCCCCC-----Ccccc---------------------ccCChhhhhhcC
Q 008873 455 -------------------------FYTEKYMGLPSE-----DPVGY---------------------EYSSVMHHVHKM 483 (550)
Q Consensus 455 -------------------------~~~~~~~g~~~~-----~~~~~---------------------~~~~~~~~~~~i 483 (550)
.+...+...... ..+.+ ...+....+.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i 217 (456)
T 3vdx_A 138 DGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRI 217 (456)
T ss_dssp SCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTC
T ss_pred cccchHHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhC
Confidence 000001111000 00000 011233456778
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++|+|+++|+.|..+|+....+.+.+. ..+++++++|+++|.+. .++...+.+.+.+||+++
T Consensus 218 ~~PvLiI~G~~D~~vp~~~~~~~l~~~---~~~~~~~~i~gagH~~~-~e~p~~v~~~I~~FL~~~ 279 (456)
T 3vdx_A 218 DVPALILHGTGDRTLPIENTARVFHKA---LPSAEYVEVEGAPHGLL-WTHAEEVNTALLAFLAKA 279 (456)
T ss_dssp CSCCEEEEETTCSSSCGGGTHHHHHHH---CTTSEEEEETTCCSCTT-TTTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCcCHHHHHHHHHHH---CCCceEEEeCCCCCcch-hhCHHHHHHHHHHHHHHh
Confidence 899999999999999998444444333 35689999999999874 467888999999999875
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=170.10 Aligned_cols=215 Identities=13% Similarity=0.132 Sum_probs=142.7
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
.+...||..+++....+. ..|+||++||.+.+.. . |......|++ +|.|+++|.||+|.+....
T Consensus 8 ~~~~~~g~~l~y~~~G~~-------~~p~lvl~hG~~~~~~---~----w~~~~~~L~~-~~~vi~~D~rG~G~S~~~~- 71 (266)
T 3om8_A 8 FLATSDGASLAYRLDGAA-------EKPLLALSNSIGTTLH---M----WDAQLPALTR-HFRVLRYDARGHGASSVPP- 71 (266)
T ss_dssp EEECTTSCEEEEEEESCT-------TSCEEEEECCTTCCGG---G----GGGGHHHHHT-TCEEEEECCTTSTTSCCCC-
T ss_pred EEeccCCcEEEEEecCCC-------CCCEEEEeCCCccCHH---H----HHHHHHHhhc-CcEEEEEcCCCCCCCCCCC-
Confidence 456779999988877542 2378899999765532 2 3445666765 7999999999999886321
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch------
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF------ 455 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------ 455 (550)
+...++++.+.+..+.+.- ..+++.|+||||||.+++.++.++|++++++|+.++.........+
T Consensus 72 -------~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~ 142 (266)
T 3om8_A 72 -------GPYTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAA 142 (266)
T ss_dssp -------SCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHH
Confidence 1123444444444444332 3468999999999999999999999999999998764321110000
Q ss_pred -------------hhhhccC-----CCCC------------Cccc-------cccCChhhhhhcCCCcEEEEecCCCCCC
Q 008873 456 -------------YTEKYMG-----LPSE------------DPVG-------YEYSSVMHHVHKMKGKLLLVHGMIDENV 498 (550)
Q Consensus 456 -------------~~~~~~g-----~~~~------------~~~~-------~~~~~~~~~~~~i~~P~lii~G~~D~~v 498 (550)
....++. .... .... +...+....+.++++|+|+++|+.|..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~G~~D~~~ 222 (266)
T 3om8_A 143 VLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVT 222 (266)
T ss_dssp HHHCSSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEEETTCSSS
T ss_pred HHccccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEEeCCCCCC
Confidence 0000000 0000 0000 0111222346788999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 499 HFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 499 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
|+..+..+.+.+ ...++++++ +||.. ..+....+.+.+.+||.
T Consensus 223 ~~~~~~~l~~~i----p~a~~~~i~-~gH~~-~~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 223 AASHGELIAASI----AGARLVTLP-AVHLS-NVEFPQAFEGAVLSFLG 265 (266)
T ss_dssp CHHHHHHHHHHS----TTCEEEEES-CCSCH-HHHCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhC----CCCEEEEeC-CCCCc-cccCHHHHHHHHHHHhc
Confidence 999888887655 456888888 79976 55777888899999985
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-18 Score=162.98 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=142.7
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
.++..+|..+ .+|.|.. ++.|+||++|||+....-.+.| +......+++.||.|+++|||+.+.. .+.
T Consensus 8 ~~~~~~~~~~--~~y~p~~-----~~~p~iv~~HGGg~~~g~~~~~---~~~~~~~l~~~g~~Vi~vdYrlaPe~--~~p 75 (274)
T 2qru_A 8 NQTLANGATV--TIYPTTT-----EPTNYVVYLHGGGMIYGTKSDL---PEELKELFTSNGYTVLALDYLLAPNT--KID 75 (274)
T ss_dssp EEECTTSCEE--EEECCSS-----SSCEEEEEECCSTTTSCCGGGC---CHHHHHHHHTTTEEEEEECCCCTTTS--CHH
T ss_pred cccccCCeeE--EEEcCCC-----CCCcEEEEEeCccccCCChhhc---hHHHHHHHHHCCCEEEEeCCCCCCCC--CCc
Confidence 4445566544 6677753 3569999999987543211222 12345677889999999999987643 222
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh---hCCCeeEEEEEcCCcCCcccccc----
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA---RFPDVFQCAVSGAPVTSWDGYDT---- 454 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~---~~~~~~~~~v~~~~~~~~~~~~~---- 454 (550)
. .++|+.++++|+.++.. ++++|+|+|+|+||.+++.++. ..+..+++++..+|..+......
T Consensus 76 ~---------~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~ 145 (274)
T 2qru_A 76 H---------ILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKL 145 (274)
T ss_dssp H---------HHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCS
T ss_pred H---------HHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhh
Confidence 1 17899999999987642 2689999999999999999887 35677888888877766211000
Q ss_pred -------hhhhhccC-CC-----CCCc-c---------cc------------ccCCh-hhhhhcCCCcEEEEecCCCCCC
Q 008873 455 -------FYTEKYMG-LP-----SEDP-V---------GY------------EYSSV-MHHVHKMKGKLLLVHGMIDENV 498 (550)
Q Consensus 455 -------~~~~~~~g-~~-----~~~~-~---------~~------------~~~~~-~~~~~~i~~P~lii~G~~D~~v 498 (550)
........ .+ .... . .+ ..... ...+.++ +|+||++|+.|..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~~D~~~ 224 (274)
T 2qru_A 146 LKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEV 224 (274)
T ss_dssp CSSCCCSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEETTCSSS
T ss_pred ccccccHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEecCCCCc
Confidence 00000000 00 0000 0 00 00000 0134556 79999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC---CcHHHHHHHHHHHHHHh
Q 008873 499 HFRHTARLINALVAARKPYEILIFPDERHMPRRH---RDRIYMEERIWEFIERT 549 (550)
Q Consensus 499 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~---~~~~~~~~~~~~fl~~~ 549 (550)
+...+.++.+++ .+++++++++++|++... ....++.+.+.+||+++
T Consensus 225 ~~~~~~~l~~~~----~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~~ 274 (274)
T 2qru_A 225 PFRYSKKIGRTI----PESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKER 274 (274)
T ss_dssp CTHHHHHHHHHS----TTCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhC----CCcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhhC
Confidence 988777776654 578999999999998321 23346688899999764
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=166.61 Aligned_cols=202 Identities=11% Similarity=-0.008 Sum_probs=135.6
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|+||++||.+++.. .|....+.|+++||.|+++|+||+|.+..... ......+..+.+..+.++-.
T Consensus 5 ~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~l~~~l~~l~ 70 (258)
T 3dqz_A 5 HHFVLVHNAYHGAW-------IWYKLKPLLESAGHRVTAVELAASGIDPRPIQ-------AVETVDEYSKPLIETLKSLP 70 (258)
T ss_dssp CEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTTCSSCGG-------GCCSHHHHHHHHHHHHHTSC
T ss_pred CcEEEECCCCCccc-------cHHHHHHHHHhCCCEEEEecCCCCcCCCCCCC-------ccccHHHhHHHHHHHHHHhc
Confidence 88999999876543 24456788999999999999999998764311 11235555555555544422
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch-hhh-----------------------------
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-YTE----------------------------- 458 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~----------------------------- 458 (550)
. .+++.|+|||+||++++.++.++|++++++|+.+|.......... ...
T Consensus 71 ~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T 3dqz_A 71 E-NEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKM 149 (258)
T ss_dssp T-TCCEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEEC
T ss_pred c-cCceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhh
Confidence 1 378999999999999999999999999999988875432111000 000
Q ss_pred -------hccCCC-CCCc----------cc----cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Q 008873 459 -------KYMGLP-SEDP----------VG----YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 516 (550)
Q Consensus 459 -------~~~g~~-~~~~----------~~----~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 516 (550)
.+.... .... .. +............++|+|+++|++|..+|++....+.+.+ ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~ 225 (258)
T 3dqz_A 150 GPKFMKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNF----NV 225 (258)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHS----CC
T ss_pred hHHHHHHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeCHHHHHHHHHhC----Cc
Confidence 000000 0000 00 0000111112223589999999999999999888877665 34
Q ss_pred eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 517 YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.++.++|+++|.+ ..++...+.+.+.+|++++|
T Consensus 226 ~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 226 SKVYEIDGGDHMV-MLSKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp SCEEEETTCCSCH-HHHSHHHHHHHHHHHHHHTC
T ss_pred ccEEEcCCCCCch-hhcChHHHHHHHHHHHHHhC
Confidence 5889999999987 34677889999999999986
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=169.69 Aligned_cols=209 Identities=17% Similarity=0.147 Sum_probs=138.4
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
..+|..+++..+. . + |.||++||.+.+.. .|....+.|+++||.|+++|+||+|.+....
T Consensus 9 ~~~g~~l~y~~~g---~----g--~pvvllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~---- 68 (277)
T 1brt_A 9 NSTSIDLYYEDHG---T----G--QPVVLIHGFPLSGH-------SWERQSAALLDAGYRVITYDRRGFGQSSQPT---- 68 (277)
T ss_dssp TTEEEEEEEEEEC---S----S--SEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCS----
T ss_pred cCCCcEEEEEEcC---C----C--CeEEEECCCCCcHH-------HHHHHHHHHhhCCCEEEEeCCCCCCCCCCCC----
Confidence 3466777666542 1 1 34888999876542 3455678899999999999999999886421
Q ss_pred hhccCCCch----HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCCcCCccc--------
Q 008873 385 KHNCGRIDA----EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDG-------- 451 (550)
Q Consensus 385 ~~~~~~~~~----~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~~~~~~~-------- 451 (550)
....+ +|+.+.++.+ +.+++.|+||||||.+++.++.++|+ +++++|+.++......
T Consensus 69 ----~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~ 138 (277)
T 1brt_A 69 ----TGYDYDTFAADLNTVLETL------DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDG 138 (277)
T ss_dssp ----SCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTC
T ss_pred ----CCccHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccc
Confidence 11223 4444444443 34689999999999999999999998 9999999887432110
Q ss_pred -cc-ch---------------h---hhhccCC----C-CCCccc---c----------------c--cCChhhhhhcCCC
Q 008873 452 -YD-TF---------------Y---TEKYMGL----P-SEDPVG---Y----------------E--YSSVMHHVHKMKG 485 (550)
Q Consensus 452 -~~-~~---------------~---~~~~~g~----~-~~~~~~---~----------------~--~~~~~~~~~~i~~ 485 (550)
.. .. + ...+.+. . ....+. + . ..+....+.++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 218 (277)
T 1brt_A 139 AAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDV 218 (277)
T ss_dssp SBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCS
T ss_pred cccHHHHHHHHHHHhcCchhhHHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCC
Confidence 00 00 0 0001110 0 000000 0 0 1122335678899
Q ss_pred cEEEEecCCCCCCChHHH-HHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 486 KLLLVHGMIDENVHFRHT-ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 486 P~lii~G~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
|+|+++|++|..+|+..+ ..+.+.+ .+.+++++|+++|.+ ..++...+.+.+.+||++
T Consensus 219 P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 277 (277)
T 1brt_A 219 PALILHGTGDRTLPIENTARVFHKAL----PSAEYVEVEGAPHGL-LWTHAEEVNTALLAFLAK 277 (277)
T ss_dssp CEEEEEETTCSSSCGGGTHHHHHHHC----TTSEEEEETTCCTTH-HHHTHHHHHHHHHHHHHC
T ss_pred CeEEEecCCCccCChHHHHHHHHHHC----CCCcEEEeCCCCcch-hhhCHHHHHHHHHHHHhC
Confidence 999999999999999887 6665544 457899999999987 335677888999999863
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-19 Score=169.24 Aligned_cols=214 Identities=15% Similarity=0.115 Sum_probs=138.3
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchh-HhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~-~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
.+|..+++..+.+.+ .|.||++||.+.+.. . |.. ++..|+++||.|+++|+||+|.+.....
T Consensus 8 ~~g~~l~y~~~G~~~-------~~~vvllHG~~~~~~---~----w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~~~--- 70 (298)
T 1q0r_A 8 SGDVELWSDDFGDPA-------DPALLLVMGGNLSAL---G----WPDEFARRLADGGLHVIRYDHRDTGRSTTRDF--- 70 (298)
T ss_dssp ETTEEEEEEEESCTT-------SCEEEEECCTTCCGG---G----SCHHHHHHHHTTTCEEEEECCTTSTTSCCCCT---
T ss_pred cCCeEEEEEeccCCC-------CCeEEEEcCCCCCcc---c----hHHHHHHHHHhCCCEEEeeCCCCCCCCCCCCC---
Confidence 478888887775422 267889999766532 2 332 3478889999999999999998864100
Q ss_pred hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC-Cc--------------
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT-SW-------------- 449 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~-~~-------------- 449 (550)
......++++.+.+..+.+.- +.+++.|+||||||.+++.++.++|++++++|+.++.. ..
T Consensus 71 --~~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 146 (298)
T 1q0r_A 71 --AAHPYGFGELAADAVAVLDGW--GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEP 146 (298)
T ss_dssp --TTSCCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCC
T ss_pred --CcCCcCHHHHHHHHHHHHHHh--CCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCcccccchhhhhhhhh
Confidence 001123445544444444432 34689999999999999999999999999999877644 21
Q ss_pred -----cccc-c----hhh------------hh------cc-C--CCCC----------------Ccccc-----c---cC
Q 008873 450 -----DGYD-T----FYT------------EK------YM-G--LPSE----------------DPVGY-----E---YS 474 (550)
Q Consensus 450 -----~~~~-~----~~~------------~~------~~-g--~~~~----------------~~~~~-----~---~~ 474 (550)
.... . ... .. .+ . .+.. ....+ . ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (298)
T 1q0r_A 147 TLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPP 226 (298)
T ss_dssp CSSCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCC
T ss_pred hhcccccccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchhhhhhhhhcCc
Confidence 0000 0 000 00 00 0 0000 00000 0 11
Q ss_pred Chhhh-hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 475 SVMHH-VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 475 ~~~~~-~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+.... +.++++|+|+++|++|..+|+..+..+.+.+ ...+++++|++||. ....+.+.+.+||.++
T Consensus 227 ~~~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~gHe-----~p~~~~~~i~~fl~~~ 293 (298)
T 1q0r_A 227 PSRAAELREVTVPTLVIQAEHDPIAPAPHGKHLAGLI----PTARLAEIPGMGHA-----LPSSVHGPLAEVILAH 293 (298)
T ss_dssp GGGGGGGGGCCSCEEEEEETTCSSSCTTHHHHHHHTS----TTEEEEEETTCCSS-----CCGGGHHHHHHHHHHH
T ss_pred ccccccccccCCCEEEEEeCCCccCCHHHHHHHHHhC----CCCEEEEcCCCCCC-----CcHHHHHHHHHHHHHH
Confidence 12234 7788999999999999999998877766543 46799999999992 2356778899999765
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-19 Score=168.58 Aligned_cols=220 Identities=18% Similarity=0.165 Sum_probs=142.3
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch-
Q 008873 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL- 378 (550)
Q Consensus 300 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~- 378 (550)
+..+...+|..+++..+.|.+ .|.||++||.+++... . |......| +.||.|+++|+||+|.+..
T Consensus 4 ~~~~~~~~g~~l~~~~~G~~~-------~~~vvllHG~~~~~~~--~----w~~~~~~L-~~~~~vi~~Dl~G~G~S~~~ 69 (286)
T 2yys_A 4 EIGYVPVGEAELYVEDVGPVE-------GPALFVLHGGPGGNAY--V----LREGLQDY-LEGFRVVYFDQRGSGRSLEL 69 (286)
T ss_dssp EEEEEECSSCEEEEEEESCTT-------SCEEEEECCTTTCCSH--H----HHHHHGGG-CTTSEEEEECCTTSTTSCCC
T ss_pred ceeEEeECCEEEEEEeecCCC-------CCEEEEECCCCCcchh--H----HHHHHHHh-cCCCEEEEECCCCCCCCCCC
Confidence 344555688889888776532 2678999998765320 1 33345666 4689999999999998764
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-cch--
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-DTF-- 455 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~-- 455 (550)
.... ....++++.+.+..+.+.- ..+++.|+||||||.+++.++.++|+ ++++|+.++....... ...
T Consensus 70 ~~~~------~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~ 140 (286)
T 2yys_A 70 PQDP------RLFTVDALVEDTLLLAEAL--GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAE 140 (286)
T ss_dssp CSCG------GGCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHH
T ss_pred ccCc------ccCcHHHHHHHHHHHHHHh--CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHH
Confidence 1110 0122444444444444332 34689999999999999999999999 9999999886422110 000
Q ss_pred -------------hh------------hhcc-CCC---------------CCCc--------cccccCChhhhhhcCCCc
Q 008873 456 -------------YT------------EKYM-GLP---------------SEDP--------VGYEYSSVMHHVHKMKGK 486 (550)
Q Consensus 456 -------------~~------------~~~~-g~~---------------~~~~--------~~~~~~~~~~~~~~i~~P 486 (550)
.. .... ..+ .... ......+....+.++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 220 (286)
T 2yys_A 141 AAGLAPLPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRP 220 (286)
T ss_dssp HTTCCCCSCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSC
T ss_pred HhccccchhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCC
Confidence 00 0000 000 0000 001111223346678899
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 487 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+|+++|++|..+|+. +..+.+ +. +.++.++|++||.+ ..+....+.+.+.+||.+.
T Consensus 221 ~lvi~G~~D~~~~~~-~~~~~~-~~----~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 276 (286)
T 2yys_A 221 LYVLVGERDGTSYPY-AEEVAS-RL----RAPIRVLPEAGHYL-WIDAPEAFEEAFKEALAAL 276 (286)
T ss_dssp EEEEEETTCTTTTTT-HHHHHH-HH----TCCEEEETTCCSSH-HHHCHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCcCCHh-HHHHHh-CC----CCCEEEeCCCCCCc-ChhhHHHHHHHHHHHHHhh
Confidence 999999999999988 877776 53 35788999999987 3355788899999999763
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-19 Score=172.92 Aligned_cols=232 Identities=14% Similarity=0.083 Sum_probs=151.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeec----------ccccccchhHh---HHHHhCCcEEEEECCCC-
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC----------DSWINTVDMRA---QYLRSKGILVWKLDNRG- 372 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~----------~~~~~~~~~~~---~~l~~~G~~vv~~d~rG- 372 (550)
+|..+.+..+.+... .+.|+||++||.+++.... ..| .... +.|.+.||.|+++|+||
T Consensus 29 ~g~~l~y~~~g~~~~----~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~l~~~g~~vi~~D~~G~ 100 (366)
T 2pl5_A 29 SPVVIAYETYGTLSS----SKNNAILICHALSGDAHAAGYHSGSDKKPGWW----DDYIGPGKSFDTNQYFIICSNVIGG 100 (366)
T ss_dssp SSEEEEEEEEECCCT----TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTT----TTTEETTSSEETTTCEEEEECCTTC
T ss_pred cCceeeEEeccCcCC----CCCceEEEecccCCcccccccccccccccchH----HhhcCCcccccccccEEEEecCCCc
Confidence 445677777665432 2347899999987664310 023 2222 23557899999999999
Q ss_pred -CCCCchhhHHHH-----hhccCCCchHHHHHHHHHHHHcCCCCCCce-EEEEechhHHHHHHHHhhCCCeeEEEEEcCC
Q 008873 373 -TARRGLKFEASI-----KHNCGRIDAEDQLTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAP 445 (550)
Q Consensus 373 -~g~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~ 445 (550)
+|.++....... ...+....++++.+.+..+.+.- +.+++ .|+||||||.+++.++.++|++++++|+.+|
T Consensus 101 ~~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~l--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 178 (366)
T 2pl5_A 101 CKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESL--GIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAS 178 (366)
T ss_dssp SSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT--TCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred ccCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHHc--CCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEecc
Confidence 676653210000 01111245677777776666542 44688 7999999999999999999999999999988
Q ss_pred cCCcccccc---------------------------------------------hhhhhccCC-C-------CCCccccc
Q 008873 446 VTSWDGYDT---------------------------------------------FYTEKYMGL-P-------SEDPVGYE 472 (550)
Q Consensus 446 ~~~~~~~~~---------------------------------------------~~~~~~~g~-~-------~~~~~~~~ 472 (550)
......... .+...+... . ....+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (366)
T 2pl5_A 179 TAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYL 258 (366)
T ss_dssp CSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGG
T ss_pred CccCCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHH
Confidence 754321000 000000000 0 00000010
Q ss_pred ------------------------cCC------hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEc
Q 008873 473 ------------------------YSS------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522 (550)
Q Consensus 473 ------------------------~~~------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~ 522 (550)
..+ ....+.++++|+|+++|++|..+|++.+.++.+.+...+.+.+++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (366)
T 2pl5_A 259 IYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVEL 338 (366)
T ss_dssp GSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHhhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEe
Confidence 000 12256788999999999999999999999999999877767899999
Q ss_pred -CCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 523 -PDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 523 -p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++|.+.. ++...+.+.+.+||+++
T Consensus 339 ~~~~gH~~~~-e~p~~~~~~i~~fl~~~ 365 (366)
T 2pl5_A 339 QSGEGHDSFL-LKNPKQIEILKGFLENP 365 (366)
T ss_dssp CCCBSSGGGG-SCCHHHHHHHHHHHHCC
T ss_pred CCCCCcchhh-cChhHHHHHHHHHHccC
Confidence 899998743 45678899999999865
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-19 Score=167.45 Aligned_cols=217 Identities=13% Similarity=0.100 Sum_probs=142.3
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+...++. +|..+.+.... +.|+||++||.+.+.. . |..+.+.|++ ||.|+++|+||+|.+..
T Consensus 4 ~~~~~~~-~~~~~~y~~~g---------~~~~vv~~HG~~~~~~---~----~~~~~~~L~~-~~~vi~~d~~G~G~s~~ 65 (278)
T 3oos_A 4 TTNIIKT-PRGKFEYFLKG---------EGPPLCVTHLYSEYND---N----GNTFANPFTD-HYSVYLVNLKGCGNSDS 65 (278)
T ss_dssp EEEEEEE-TTEEEEEEEEC---------SSSEEEECCSSEECCT---T----CCTTTGGGGG-TSEEEEECCTTSTTSCC
T ss_pred ccCcEec-CCceEEEEecC---------CCCeEEEEcCCCcchH---H----HHHHHHHhhc-CceEEEEcCCCCCCCCC
Confidence 3334444 56667665432 2367899999766543 2 3334667777 99999999999998764
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-----
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----- 453 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~----- 453 (550)
.... .....+|+.+.+..+.++- +.+++.|+|||+||.+++.++.++|++++++|+.+|........
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~ 137 (278)
T 3oos_A 66 AKND------SEYSMTETIKDLEAIREAL--YINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSI 137 (278)
T ss_dssp CSSG------GGGSHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTST
T ss_pred CCCc------ccCcHHHHHHHHHHHHHHh--CCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchh
Confidence 3110 1123555555555555542 44689999999999999999999999999999999876511000
Q ss_pred ------------ch------------------------------hhhhccCCCCCCc-----------cccccCChhhhh
Q 008873 454 ------------TF------------------------------YTEKYMGLPSEDP-----------VGYEYSSVMHHV 480 (550)
Q Consensus 454 ------------~~------------------------------~~~~~~g~~~~~~-----------~~~~~~~~~~~~ 480 (550)
.. ....++..+.... ..+...+....+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (278)
T 3oos_A 138 YCSKNVKFNRIVSIMNALNDDSTVQEERKALSREWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKL 217 (278)
T ss_dssp TSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHH
T ss_pred hhhhchhHHHHHHHHHhhcccccCchHHHHHHHHHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHH
Confidence 00 0000111111100 011233445567
Q ss_pred hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 481 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
.++++|+|+++|++|..+|++.+.++.+.+ .+.+++++++++|.+. .++...+.+.+.+||
T Consensus 218 ~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 278 (278)
T 3oos_A 218 KFVKIPSFIYCGKHDVQCPYIFSCEIANLI----PNATLTKFEESNHNPF-VEEIDKFNQFVNDTL 278 (278)
T ss_dssp TTCCSCEEEEEETTCSSSCHHHHHHHHHHS----TTEEEEEETTCSSCHH-HHSHHHHHHHHHHTC
T ss_pred hCCCCCEEEEEeccCCCCCHHHHHHHHhhC----CCcEEEEcCCcCCCcc-cccHHHHHHHHHhhC
Confidence 889999999999999999999888887765 4679999999999873 345666666666653
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-19 Score=168.05 Aligned_cols=216 Identities=18% Similarity=0.190 Sum_probs=137.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH-HHh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA-SIK 385 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~-~~~ 385 (550)
+|..+++..+.+. .+.|.||++||++++.. .| +.. ...++++||.|+++|+||+|.+...... ...
T Consensus 13 ~g~~l~~~~~g~~------~~~~~vvllHG~~~~~~---~~---~~~-~~~l~~~g~~vi~~D~~G~G~S~~~~~~~~~~ 79 (293)
T 1mtz_A 13 NGIYIYYKLCKAP------EEKAKLMTMHGGPGMSH---DY---LLS-LRDMTKEGITVLFYDQFGCGRSEEPDQSKFTI 79 (293)
T ss_dssp TTEEEEEEEECCS------SCSEEEEEECCTTTCCS---GG---GGG-GGGGGGGTEEEEEECCTTSTTSCCCCGGGCSH
T ss_pred CCEEEEEEEECCC------CCCCeEEEEeCCCCcch---hH---HHH-HHHHHhcCcEEEEecCCCCccCCCCCCCcccH
Confidence 6777877766431 12367888999766532 12 121 2334678999999999999987643200 000
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-----------cc
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-----------DT 454 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-----------~~ 454 (550)
..+ .+|+.+.++.+. +.+++.|+||||||.+++.+|.++|++++++|+.+|....... ..
T Consensus 80 ~~~----~~dl~~~~~~l~-----~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
T 1mtz_A 80 DYG----VEEAEALRSKLF-----GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPA 150 (293)
T ss_dssp HHH----HHHHHHHHHHHH-----TTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCH
T ss_pred HHH----HHHHHHHHHHhc-----CCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHHHHHHHhcCH
Confidence 111 344444444441 1258999999999999999999999999999999886542100 00
Q ss_pred ----h---------------------hhhhccC--CCCCCc-----------c---------------ccccCChhhhhh
Q 008873 455 ----F---------------------YTEKYMG--LPSEDP-----------V---------------GYEYSSVMHHVH 481 (550)
Q Consensus 455 ----~---------------------~~~~~~g--~~~~~~-----------~---------------~~~~~~~~~~~~ 481 (550)
. +...... .++... . .....+....+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 230 (293)
T 1mtz_A 151 KYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKIS 230 (293)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGG
T ss_pred HHHHHHHHhhccCCcChHHHHHHHHHHHHhhcccccCchHHHHHhHhhhccchhhhhccCcceecccccccCCChhhhhc
Confidence 0 0000000 000000 0 000112234567
Q ss_pred cCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 482 KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 482 ~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++++|+|+++|++| .+++..+.++.+.+ .+.++++++++||.+. .++...+.+.+.+||.++|
T Consensus 231 ~i~~P~lii~G~~D-~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~~l 293 (293)
T 1mtz_A 231 AIKIPTLITVGEYD-EVTPNVARVIHEKI----AGSELHVFRDCSHLTM-WEDREGYNKLLSDFILKHL 293 (293)
T ss_dssp GCCSCEEEEEETTC-SSCHHHHHHHHHHS----TTCEEEEETTCCSCHH-HHSHHHHHHHHHHHHHTCC
T ss_pred cCCCCEEEEeeCCC-CCCHHHHHHHHHhC----CCceEEEeCCCCCCcc-ccCHHHHHHHHHHHHHhcC
Confidence 78999999999999 77877777666544 4579999999999873 3567889999999998875
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=176.62 Aligned_cols=245 Identities=15% Similarity=0.111 Sum_probs=154.2
Q ss_pred eEEEEEcCCCcEE----EEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc------cccchhHh---HHHHhCCcEE
Q 008873 299 DIVQIQANDGTVL----YGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW------INTVDMRA---QYLRSKGILV 365 (550)
Q Consensus 299 ~~~~~~~~~g~~l----~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~------~~~~~~~~---~~l~~~G~~v 365 (550)
+...|+..+|..+ ++..+.+.+. .+.|+||++||.+++......+ ...|..+. +.|.+.||.|
T Consensus 13 ~~~~~~~~~g~~l~~~i~y~~~g~~~~----~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~v 88 (377)
T 3i1i_A 13 ILKEYTFENGRTIPVQMGYETYGTLNR----ERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFV 88 (377)
T ss_dssp EEEEEECTTSCEEEEEEEEEEESCCCT----TCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEE
T ss_pred eecceeecCCCEeeeeEEEEeecccCC----CCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEE
Confidence 3445666676655 4444443321 3458999999987764320000 00022233 5567889999
Q ss_pred EEECCCCCCCC--------chhhHHH-----HhhccCCCchHHHHHHHHHHHHcCCCCCCceE-EEEechhHHHHHHHHh
Q 008873 366 WKLDNRGTARR--------GLKFEAS-----IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLA 431 (550)
Q Consensus 366 v~~d~rG~g~~--------~~~~~~~-----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~~a~~~~~ 431 (550)
+++|+||+|.+ |..-... ....+....++|+.+.+..++++- +.+++. |+||||||.+++.+|.
T Consensus 89 i~~D~~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~l--~~~~~~ilvGhS~Gg~ia~~~a~ 166 (377)
T 3i1i_A 89 ICTDNLCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKDM--GIARLHAVMGPSAGGMIAQQWAV 166 (377)
T ss_dssp EEECCTTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT--TCCCBSEEEEETHHHHHHHHHHH
T ss_pred EEecccccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHHc--CCCcEeeEEeeCHhHHHHHHHHH
Confidence 99999988542 1100000 001122446778888777777653 345775 9999999999999999
Q ss_pred hCCCeeEEEEE-cCCcCCcccc---------------c------------------------------chhhhhccCCCC
Q 008873 432 RFPDVFQCAVS-GAPVTSWDGY---------------D------------------------------TFYTEKYMGLPS 465 (550)
Q Consensus 432 ~~~~~~~~~v~-~~~~~~~~~~---------------~------------------------------~~~~~~~~g~~~ 465 (550)
++|++++++|+ .++....... . ..+...+.....
T Consensus 167 ~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (377)
T 3i1i_A 167 HYPHMVERMIGVITNPQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSI 246 (377)
T ss_dssp HCTTTBSEEEEESCCSBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSS
T ss_pred HChHHHHHhcccCcCCCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhc
Confidence 99999999998 6654331000 0 000000000000
Q ss_pred CC-----------ccc-----------------c-------c-------cCChhhhhhcCCCcEEEEecCCCCCCChHHH
Q 008873 466 ED-----------PVG-----------------Y-------E-------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 503 (550)
Q Consensus 466 ~~-----------~~~-----------------~-------~-------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 503 (550)
.. .+. + . ..+....+.++++|+|+++|++|..+|+..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~ 326 (377)
T 3i1i_A 247 EVEPYEKVSSLTSFEKEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALSNVEANVLMIPCKQDLLQPSRYN 326 (377)
T ss_dssp CCGGGTCTTCCCHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSEEEEECBTTCSSSCTHHH
T ss_pred cccccccccchhHHHHHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHhhCCCCEEEEecCCccccCHHHH
Confidence 00 000 0 0 0111345678899999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEcCC-CCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 504 ARLINALVAARKPYEILIFPD-ERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 504 ~~~~~~l~~~~~~~~~~~~p~-~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.++.+.+.+.+.+++++++++ +||... .+....+.+.+.+||++++
T Consensus 327 ~~~~~~~~~~g~~~~~~~i~~~~gH~~~-~e~p~~~~~~i~~fl~~~~ 373 (377)
T 3i1i_A 327 YKMVDLLQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKVYEFLNRKV 373 (377)
T ss_dssp HHHHHHHHHTTCCEEECCBCCTTGGGHH-HHCGGGTHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCceEEEcCCCCCCcch-hcCHHHHHHHHHHHHHhhh
Confidence 999999988778899999998 999763 3455778899999998764
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=182.29 Aligned_cols=234 Identities=15% Similarity=0.129 Sum_probs=149.9
Q ss_pred EEEEcCCCcEEEEEEEcCCCC--CCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH----hCCc---EEEEECCC
Q 008873 301 VQIQANDGTVLYGALYKPDES--RYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR----SKGI---LVWKLDNR 371 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~--~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~----~~G~---~vv~~d~r 371 (550)
..+...||..+.+..+.|.+. ....++.|+||++||.++... . |..+...|+ ..|| .|+++|+|
T Consensus 23 ~~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~---~----~~~~~~~L~~~~~~~G~~~~~vi~~D~~ 95 (398)
T 2y6u_A 23 STLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKV---V----WEYYLPRLVAADAEGNYAIDKVLLIDQV 95 (398)
T ss_dssp SBSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGG---G----GGGGGGGSCCCBTTTTEEEEEEEEECCT
T ss_pred ccccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHH---H----HHHHHHHHHHhhhhcCcceeEEEEEcCC
Confidence 345567999999999987641 011134589999999876543 2 333466676 4589 99999999
Q ss_pred CCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-C---CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 372 GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-G---LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 372 G~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~---~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
|+|.+...... .......+.+..+.+..+++. . .+++.+++|+||||||.+++.++.++|++++++|+.+|..
T Consensus 96 G~G~S~~~~~~---~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 172 (398)
T 2y6u_A 96 NHGDSAVRNRG---RLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVV 172 (398)
T ss_dssp TSHHHHHHTTT---TBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCC
T ss_pred CCCCCCCCCcc---ccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccc
Confidence 99866432100 000122333333333332221 1 2344459999999999999999999999999999998865
Q ss_pred Cccc---------------ccchhhh-----------------hcc---C-CCCCCcc---c------------------
Q 008873 448 SWDG---------------YDTFYTE-----------------KYM---G-LPSEDPV---G------------------ 470 (550)
Q Consensus 448 ~~~~---------------~~~~~~~-----------------~~~---g-~~~~~~~---~------------------ 470 (550)
.... ....+.. .++ . ....+++ .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (398)
T 2y6u_A 173 ITRKAIGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGP 252 (398)
T ss_dssp SCCCCCSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CC
T ss_pred ccccccccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCc
Confidence 4310 0000000 000 0 0000000 0
Q ss_pred -------------cc-----cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC
Q 008873 471 -------------YE-----YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH 532 (550)
Q Consensus 471 -------------~~-----~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~ 532 (550)
+. .......+.++++|+|+++|++|..+|+..+..+.+.+ .+++++++|+++|.+. .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~~~~~~~l~~~~----~~~~~~~~~~~gH~~~-~ 327 (398)
T 2y6u_A 253 VRTKMEQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTL----QNYHLDVIPGGSHLVN-V 327 (398)
T ss_dssp EEESSCHHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSCHHHHHHHHHHC----SSEEEEEETTCCTTHH-H
T ss_pred eEecCCchhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCCHHHHHHHHHhC----CCceEEEeCCCCccch-h
Confidence 00 00122456788999999999999999999888777655 4689999999999863 3
Q ss_pred CcHHHHHHHHHHHHHHh
Q 008873 533 RDRIYMEERIWEFIERT 549 (550)
Q Consensus 533 ~~~~~~~~~~~~fl~~~ 549 (550)
++...+.+.+.+||.++
T Consensus 328 e~p~~~~~~i~~fl~~~ 344 (398)
T 2y6u_A 328 EAPDLVIERINHHIHEF 344 (398)
T ss_dssp HSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 56778889999999875
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-19 Score=166.27 Aligned_cols=203 Identities=13% Similarity=0.043 Sum_probs=137.3
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
++..++. +|..+.+..+.|. +.|+||++||.+++.. .|..+.+.|+++||.|+++|+||+|.+..
T Consensus 5 ~~~~~~~-~g~~l~~~~~g~~-------~~~~vv~~hG~~~~~~-------~~~~~~~~l~~~G~~v~~~d~~G~G~s~~ 69 (286)
T 3qit_A 5 EEKFLEF-GGNQICLCSWGSP-------EHPVVLCIHGILEQGL-------AWQEVALPLAAQGYRVVAPDLFGHGRSSH 69 (286)
T ss_dssp EEEEEEE-TTEEEEEEEESCT-------TSCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCC
T ss_pred hhheeec-CCceEEEeecCCC-------CCCEEEEECCCCcccc-------hHHHHHHHhhhcCeEEEEECCCCCCCCCC
Confidence 4455554 7888999888653 2378999999876543 34456788999999999999999998764
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-c---
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD-T--- 454 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~-~--- 454 (550)
.... ......++.+.+..+.++- +.+++.++|||+||++++.++.++|++++++|+.+|........ .
T Consensus 70 ~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 141 (286)
T 3qit_A 70 LEMV------TSYSSLTFLAQIDRVIQEL--PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAV 141 (286)
T ss_dssp CSSG------GGCSHHHHHHHHHHHHHHS--CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---CCHH
T ss_pred CCCC------CCcCHHHHHHHHHHHHHhc--CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccchhhh
Confidence 3210 1123555666655555542 44789999999999999999999999999999998875432111 0
Q ss_pred -hhhh--hcc-C--------------------CCCCCc---------------c-cc--------------------ccC
Q 008873 455 -FYTE--KYM-G--------------------LPSEDP---------------V-GY--------------------EYS 474 (550)
Q Consensus 455 -~~~~--~~~-g--------------------~~~~~~---------------~-~~--------------------~~~ 474 (550)
.... ..+ . .+.... . .. ...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (286)
T 3qit_A 142 NQLTTCLDYLSSTPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGRS 221 (286)
T ss_dssp HHHHHHHHHHTCCCCCCCBSSHHHHHHHHHHHSTTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTTHHH
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHhhcCCcccCHHHHHHHhhccccccccceeeeechhhhccccccccccccchh
Confidence 0000 000 0 000000 0 00 111
Q ss_pred ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 475 SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 475 ~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
+....+.++++|+|+++|++|..+|++....+.+.+ ...+++++++ +|.+
T Consensus 222 ~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~g-gH~~ 271 (286)
T 3qit_A 222 QYLEMLKSIQVPTTLVYGDSSKLNRPEDLQQQKMTM----TQAKRVFLSG-GHNL 271 (286)
T ss_dssp HHHHHHHHCCSCEEEEEETTCCSSCHHHHHHHHHHS----TTSEEEEESS-SSCH
T ss_pred HHHHHHhccCCCeEEEEeCCCcccCHHHHHHHHHHC----CCCeEEEeeC-CchH
Confidence 223345778999999999999999998888876654 4568999999 9986
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=169.63 Aligned_cols=227 Identities=15% Similarity=0.213 Sum_probs=139.4
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCc
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRG 377 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~ 377 (550)
+...+.. +|..+++..+.+.... .+.+.||++||++++.. .|. .....|++ .||.|+++|.||+|.|.
T Consensus 29 ~~~~v~~-~g~~l~y~~~G~~~~~---~~g~plvllHG~~~~~~---~w~----~~~~~l~~~~~~~Via~D~rG~G~S~ 97 (330)
T 3nwo_A 29 SSRTVPF-GDHETWVQVTTPENAQ---PHALPLIVLHGGPGMAH---NYV----ANIAALADETGRTVIHYDQVGCGNST 97 (330)
T ss_dssp CEEEEEE-TTEEEEEEEECCSSCC---TTCCCEEEECCTTTCCS---GGG----GGGGGHHHHHTCCEEEECCTTSTTSC
T ss_pred cceeEee-cCcEEEEEEecCccCC---CCCCcEEEECCCCCCch---hHH----HHHHHhccccCcEEEEECCCCCCCCC
Confidence 3334444 7888999888774311 11124677899877643 232 23444554 69999999999999885
Q ss_pred hhhHHHHhhccC-CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc---
Q 008873 378 LKFEASIKHNCG-RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD--- 453 (550)
Q Consensus 378 ~~~~~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--- 453 (550)
....... ..+. ....+|+.+.++.+ +.+++.|+||||||++++.+|.++|++++++|+.++......+.
T Consensus 98 ~~~~~~~-~~~~~~~~a~dl~~ll~~l------g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~ 170 (330)
T 3nwo_A 98 HLPDAPA-DFWTPQLFVDEFHAVCTAL------GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAA 170 (330)
T ss_dssp CCTTSCG-GGCCHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHHHHHH
T ss_pred CCCCCcc-ccccHHHHHHHHHHHHHHc------CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHHHHHH
Confidence 3100000 0000 00134444544444 33689999999999999999999999999999877643211000
Q ss_pred --------------------------ch-------hhhhccC--CCCC------------Cc---------------ccc
Q 008873 454 --------------------------TF-------YTEKYMG--LPSE------------DP---------------VGY 471 (550)
Q Consensus 454 --------------------------~~-------~~~~~~g--~~~~------------~~---------------~~~ 471 (550)
.. +...... .++. .+ ...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (330)
T 3nwo_A 171 GDLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVAQMEAEPTVYHTMNGPNEFHVVGTL 250 (330)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCCHHHHHHHHHHHHSCHHHHHHTCSCSSSCCSGG
T ss_pred HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccccCCCHHHHHHHHhhccchhhhhcccCchhhhhhccc
Confidence 00 0000000 0000 00 001
Q ss_pred ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 472 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 472 ~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
...+....+.+|++|+|+++|+.|..+| ....++.+. -.+.+++++|++||.+ ..+..+.+.+.+.+||+++
T Consensus 251 ~~~~~~~~l~~i~~P~Lvi~G~~D~~~p-~~~~~~~~~----ip~~~~~~i~~~gH~~-~~e~p~~~~~~i~~FL~~~ 322 (330)
T 3nwo_A 251 GDWSVIDRLPDVTAPVLVIAGEHDEATP-KTWQPFVDH----IPDVRSHVFPGTSHCT-HLEKPEEFRAVVAQFLHQH 322 (330)
T ss_dssp GGCBCGGGGGGCCSCEEEEEETTCSSCH-HHHHHHHHH----CSSEEEEEETTCCTTH-HHHSHHHHHHHHHHHHHHH
T ss_pred cCCchhhhcccCCCCeEEEeeCCCccCh-HHHHHHHHh----CCCCcEEEeCCCCCch-hhcCHHHHHHHHHHHHHhc
Confidence 1112334567889999999999999775 445444443 3578999999999987 4467788999999999864
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=167.51 Aligned_cols=214 Identities=14% Similarity=0.133 Sum_probs=140.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.+|..+++..+.+.+ .+.|.||++||.+.+.. .|...+..|++ +|.|+++|+||+|.+....
T Consensus 9 ~~g~~l~y~~~g~~~-----~~~~~vvllHG~~~~~~-------~~~~~~~~L~~-~~~vi~~D~~G~G~S~~~~----- 70 (266)
T 2xua_A 9 VNGTELHYRIDGERH-----GNAPWIVLSNSLGTDLS-------MWAPQVAALSK-HFRVLRYDTRGHGHSEAPK----- 70 (266)
T ss_dssp CSSSEEEEEEESCSS-----SCCCEEEEECCTTCCGG-------GGGGGHHHHHT-TSEEEEECCTTSTTSCCCS-----
T ss_pred ECCEEEEEEEcCCcc-----CCCCeEEEecCccCCHH-------HHHHHHHHHhc-CeEEEEecCCCCCCCCCCC-----
Confidence 478889888876532 12478999999655432 23445677765 5999999999999876421
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc---c--------
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---T-------- 454 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~-------- 454 (550)
....++++.+.+..+.+.- ..+++.|+||||||.+++.+|.++|++++++|+.++........ .
T Consensus 71 ---~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 145 (266)
T 2xua_A 71 ---GPYTIEQLTGDVLGLMDTL--KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTE 145 (266)
T ss_dssp ---SCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHhc--CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhc
Confidence 1123444444444444332 33589999999999999999999999999999987754321000 0
Q ss_pred ----h---hhhhccCC------CC-----------CCcccc-------ccCChhhhhhcCCCcEEEEecCCCCCCChHHH
Q 008873 455 ----F---YTEKYMGL------PS-----------EDPVGY-------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 503 (550)
Q Consensus 455 ----~---~~~~~~g~------~~-----------~~~~~~-------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 503 (550)
. ....++.. +. .....+ ...+....+.++++|+|+++|++|..+|++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~ 225 (266)
T 2xua_A 146 GMHALADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQG 225 (266)
T ss_dssp CHHHHHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCSSSCHHHH
T ss_pred ChHHHHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCCCcCCHHHH
Confidence 0 00000000 00 000000 11122345677899999999999999999888
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 504 ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 504 ~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.++.+.+ ...++++++ ++|.+. .++...+.+.+.+||++
T Consensus 226 ~~~~~~~----~~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 226 RELAQAI----AGARYVELD-ASHISN-IERADAFTKTVVDFLTE 264 (266)
T ss_dssp HHHHHHS----TTCEEEEES-CCSSHH-HHTHHHHHHHHHHHHTC
T ss_pred HHHHHhC----CCCEEEEec-CCCCch-hcCHHHHHHHHHHHHHh
Confidence 7776654 346899999 999873 35567888999999864
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=166.11 Aligned_cols=204 Identities=13% Similarity=0.016 Sum_probs=135.9
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
...|+||++||.+++.. .|....+.|+++||.|+++|+||+|.+..... ....+.+..+.+..+.+
T Consensus 10 ~~~~~vvllHG~~~~~~-------~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~-------~~~~~~~~~~~~~~~l~ 75 (267)
T 3sty_A 10 FVKKHFVLVHAAFHGAW-------CWYKIVALMRSSGHNVTALDLGASGINPKQAL-------QIPNFSDYLSPLMEFMA 75 (267)
T ss_dssp CCCCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCcc-------hHHHHHHHHHhcCCeEEEeccccCCCCCCcCC-------ccCCHHHHHHHHHHHHH
Confidence 34589999999876543 34556788999999999999999998865421 11235555555554444
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc------------hhh-hhcc---CCC-----
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT------------FYT-EKYM---GLP----- 464 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~------------~~~-~~~~---g~~----- 464 (550)
.-. +.+++.|+|||+||.+++.++.++|++++++|+.++......... .+. ..+. +..
T Consensus 76 ~l~-~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (267)
T 3sty_A 76 SLP-ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTT 154 (267)
T ss_dssp TSC-TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCE
T ss_pred hcC-CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccch
Confidence 321 357899999999999999999999999999998887643221100 000 0000 000
Q ss_pred --------------CCCcc------------c------cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHH
Q 008873 465 --------------SEDPV------------G------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 512 (550)
Q Consensus 465 --------------~~~~~------------~------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 512 (550)
....+ . +............++|+|+++|++|..+|++...++.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-- 232 (267)
T 3sty_A 155 LIAGPKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKN-- 232 (267)
T ss_dssp EECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHS--
T ss_pred hhhhHHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccCHHHHHHHHHhC--
Confidence 00000 0 0000111111122489999999999999988887777655
Q ss_pred cCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 513 ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 513 ~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
...+++++|++||.+ ..++.+.+.+.+.+|++++
T Consensus 233 --~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 233 --PPDEVKEIEGSDHVT-MMSKPQQLFTTLLSIANKY 266 (267)
T ss_dssp --CCSEEEECTTCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred --CCceEEEeCCCCccc-cccChHHHHHHHHHHHHhc
Confidence 457999999999987 3467788999999999875
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-20 Score=166.38 Aligned_cols=183 Identities=15% Similarity=0.064 Sum_probs=114.2
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhC--CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~--G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
|+|||+||..++.. .+ ....+.+++.++ ||.|++||++|+|. +..+.+..+..+
T Consensus 3 ptIl~lHGf~ss~~---s~--k~~~l~~~~~~~~~~~~v~~pdl~~~g~-------------------~~~~~l~~~~~~ 58 (202)
T 4fle_A 3 STLLYIHGFNSSPS---SA--KATTFKSWLQQHHPHIEMQIPQLPPYPA-------------------EAAEMLESIVMD 58 (202)
T ss_dssp CEEEEECCTTCCTT---CH--HHHHHHHHHHHHCTTSEEECCCCCSSHH-------------------HHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCC---cc--HHHHHHHHHHHcCCCcEEEEeCCCCCHH-------------------HHHHHHHHHHHh
Confidence 89999999433321 11 122345666665 59999999998762 112222333222
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch-hhhhccCCCCCCc-c-ccccCChhhhhhcC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF-YTEKYMGLPSEDP-V-GYEYSSVMHHVHKM 483 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~-~~~~~~~~~~~~~i 483 (550)
. +.++|+|+|+||||++|+.++.+++....+++...+..+....... ......+.+.... . ............++
T Consensus 59 ~--~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (202)
T 4fle_A 59 K--AGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQNPYTGQKYVLESRHIYDLKAMQIEKLES 136 (202)
T ss_dssp H--TTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEECTTTCCEEEECHHHHHHHHTTCCSSCSC
T ss_pred c--CCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhccccccccccchHHHHHHHHhhhhhhhcc
Confidence 1 4579999999999999999999999887776665543221110000 0000000000000 0 00011122345667
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
++|+||+||++|++||++++.++++ ++++.++|+++|.+.. ..++++.|.+||+
T Consensus 137 ~~P~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~g~~H~~~~---~~~~~~~I~~FL~ 190 (202)
T 4fle_A 137 PDLLWLLQQTGDEVLDYRQAVAYYT-------PCRQTVESGGNHAFVG---FDHYFSPIVTFLG 190 (202)
T ss_dssp GGGEEEEEETTCSSSCHHHHHHHTT-------TSEEEEESSCCTTCTT---GGGGHHHHHHHHT
T ss_pred CceEEEEEeCCCCCCCHHHHHHHhh-------CCEEEEECCCCcCCCC---HHHHHHHHHHHHh
Confidence 7899999999999999999988763 4689999999998744 3456788999986
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=166.71 Aligned_cols=206 Identities=17% Similarity=0.164 Sum_probs=133.6
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhcc
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 388 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~ 388 (550)
..+++..+.+. ++.|+||++||.++... .| . ....|+ +||.|+++|+||+|.+...
T Consensus 3 ~~l~y~~~g~~------~~~~~vv~~hG~~~~~~---~~----~-~~~~l~-~g~~v~~~d~~g~g~s~~~--------- 58 (245)
T 3e0x_A 3 AMLHYVHVGNK------KSPNTLLFVHGSGCNLK---IF----G-ELEKYL-EDYNCILLDLKGHGESKGQ--------- 58 (245)
T ss_dssp CCCCEEEEECT------TCSCEEEEECCTTCCGG---GG----T-TGGGGC-TTSEEEEECCTTSTTCCSC---------
T ss_pred ceeEEEecCCC------CCCCEEEEEeCCcccHH---HH----H-HHHHHH-hCCEEEEecCCCCCCCCCC---------
Confidence 34555555432 24589999999776543 23 2 233444 8999999999999877521
Q ss_pred CCCchHHHHHHHHHHH----HcCCCCCCceEEEEechhHHHHHHHHhh-CCCeeEEEEEcCCcCCcccccchhhh-----
Q 008873 389 GRIDAEDQLTGAEWLI----KQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDGYDTFYTE----- 458 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~----~~~~~d~~~i~i~G~S~GG~~a~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~----- 458 (550)
.....++..+.+..+. .+..++ ++.|+|||+||.+++.++.+ +|+ ++++++.+|.............
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~ 135 (245)
T 3e0x_A 59 CPSTVYGYIDNVANFITNSEVTKHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHN 135 (245)
T ss_dssp CCSSHHHHHHHHHHHHHHCTTTTTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHhhhhHhhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHH
Confidence 1223455555554444 112233 99999999999999999999 999 9999999987665221110000
Q ss_pred --------------------hccCCCCCCccc-------cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHH
Q 008873 459 --------------------KYMGLPSEDPVG-------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALV 511 (550)
Q Consensus 459 --------------------~~~g~~~~~~~~-------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 511 (550)
.+.......+.. ....+....+.++++|+|+++|++|..+|++.+.++.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~- 214 (245)
T 3e0x_A 136 QLDNNYLLECIGGIDNPLSEKYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEV- 214 (245)
T ss_dssp CCCHHHHHHHHTCSCSHHHHHHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHS-
T ss_pred HHHhhcCcccccccchHHHHHHHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCCHHHHHHHHHHc-
Confidence 000000001110 1122334557888999999999999999999888887765
Q ss_pred HcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 512 AARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 512 ~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
.+.++.++|+++|.+.. ++...+.+.+.+||
T Consensus 215 ---~~~~~~~~~~~gH~~~~-~~~~~~~~~i~~fl 245 (245)
T 3e0x_A 215 ---ENSELKIFETGKHFLLV-VNAKGVAEEIKNFI 245 (245)
T ss_dssp ---SSEEEEEESSCGGGHHH-HTHHHHHHHHHTTC
T ss_pred ---CCceEEEeCCCCcceEE-ecHHHHHHHHHhhC
Confidence 45899999999998632 45555666666553
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-19 Score=169.49 Aligned_cols=212 Identities=11% Similarity=0.061 Sum_probs=142.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|..+.+....+ .|+||++||.+.+.. .|......|.++||.|+++|+||+|.+....
T Consensus 17 ~g~~l~~~~~g~---------~~~vv~~HG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~G~S~~~~------ 74 (309)
T 3u1t_A 17 EGATIAYVDEGS---------GQPVLFLHGNPTSSY-------LWRNIIPYVVAAGYRAVAPDLIGMGDSAKPD------ 74 (309)
T ss_dssp TTEEEEEEEEEC---------SSEEEEECCTTCCGG-------GGTTTHHHHHHTTCEEEEECCTTSTTSCCCS------
T ss_pred CCeEEEEEEcCC---------CCEEEEECCCcchhh-------hHHHHHHHHHhCCCEEEEEccCCCCCCCCCC------
Confidence 777787766532 368999999876543 2344567778889999999999999876421
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc-------cccc----h
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-------GYDT----F 455 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~----~ 455 (550)
.....+++.+.+..+.+.- +.+++.|+|||+||++++.++.++|++++++|+.+|..... .... .
T Consensus 75 --~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 150 (309)
T 3u1t_A 75 --IEYRLQDHVAYMDGFIDAL--GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPL 150 (309)
T ss_dssp --SCCCHHHHHHHHHHHHHHH--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHH
T ss_pred --cccCHHHHHHHHHHHHHHc--CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHH
Confidence 1234555555555555432 34689999999999999999999999999999988654322 0000 0
Q ss_pred -------------------hhhhcc--C-C-CCCCc---cccccC-------------------------------Chhh
Q 008873 456 -------------------YTEKYM--G-L-PSEDP---VGYEYS-------------------------------SVMH 478 (550)
Q Consensus 456 -------------------~~~~~~--g-~-~~~~~---~~~~~~-------------------------------~~~~ 478 (550)
+...++ . . ..... +.+... +...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (309)
T 3u1t_A 151 FRDLRTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGE 230 (309)
T ss_dssp HHHHTSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhh
Confidence 000000 0 0 00000 000000 1122
Q ss_pred hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 479 ~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+.++++|+|+++|+.|..+|+....++.+.+ .+.++.++++++|.+ ..++...+.+.+.+||+++
T Consensus 231 ~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~ 296 (309)
T 3u1t_A 231 WLMASPIPKLLFHAEPGALAPKPVVDYLSENV----PNLEVRFVGAGTHFL-QEDHPHLIGQGIADWLRRN 296 (309)
T ss_dssp HHHHCCSCEEEEEEEECSSSCHHHHHHHHHHS----TTEEEEEEEEESSCH-HHHCHHHHHHHHHHHHHHH
T ss_pred hcccCCCCEEEEecCCCCCCCHHHHHHHHhhC----CCCEEEEecCCcccc-hhhCHHHHHHHHHHHHHhc
Confidence 35778999999999999999998887777665 456777789999976 3457788899999999875
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=154.92 Aligned_cols=181 Identities=9% Similarity=-0.008 Sum_probs=122.4
Q ss_pred CceEEEEEcCCCCceeecccccccchh-HhHHHHhC-CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRSK-GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~-~~~~l~~~-G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
+.|+||++||.++....... |.. ..+.|+++ ||.|+++|+||.+.. +....++.+.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~----~~~~~~~~l~~~~g~~vi~~d~~g~~~~------------------~~~~~~~~~~ 60 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHG----WYGWVKKELEKIPGFQCLAKNMPDPITA------------------RESIWLPFME 60 (194)
T ss_dssp CCCEEEEECCSSSSCTTTST----THHHHHHHHTTSTTCCEEECCCSSTTTC------------------CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCcccch----HHHHHHHHHhhccCceEEEeeCCCCCcc------------------cHHHHHHHHH
Confidence 45899999998765210112 222 46777777 999999999985311 1233334444
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCC
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK 484 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 484 (550)
+.-.+ .+++.|+||||||.+++.++.++| ++++|+.+|..............+.. .......+.++.
T Consensus 61 ~~l~~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 127 (194)
T 2qs9_A 61 TELHC-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDENERASGYFT----------RPWQWEKIKANC 127 (194)
T ss_dssp HTSCC-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHHHHHTSTTS----------SCCCHHHHHHHC
T ss_pred HHhCc-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhhhHHHhhhc----------ccccHHHHHhhC
Confidence 43222 378999999999999999999988 89999988865421111000111111 111234455667
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+|+|+++|++|..+|++.+.++.+.+ +.++.++++++|.+.. +.. +.+..+++||++.
T Consensus 128 ~p~lii~G~~D~~vp~~~~~~~~~~~-----~~~~~~~~~~gH~~~~-~~p-~~~~~~~~fl~~~ 185 (194)
T 2qs9_A 128 PYIVQFGSTDDPFLPWKEQQEVADRL-----ETKLHKFTDCGHFQNT-EFH-ELITVVKSLLKVP 185 (194)
T ss_dssp SEEEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEESSCTTSCSS-CCH-HHHHHHHHHHTCC
T ss_pred CCEEEEEeCCCCcCCHHHHHHHHHhc-----CCeEEEeCCCCCccch-hCH-HHHHHHHHHHHhh
Confidence 89999999999999999999988877 3589999999999743 343 4556777999764
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=159.30 Aligned_cols=211 Identities=14% Similarity=0.057 Sum_probs=132.9
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh--CCcEEEEECCCCCCCC
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS--KGILVWKLDNRGTARR 376 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~--~G~~vv~~d~rG~g~~ 376 (550)
+.+.|.+ ..+.+.++.|.. +..++||++||.+.... .| ..+++.+.. .++.+++|+-+-....
T Consensus 16 ~~~~~~~---~~l~y~ii~P~~-----~~~~~VI~LHG~G~~~~---dl----~~l~~~l~~~~~~~~~i~P~Ap~~~~~ 80 (246)
T 4f21_A 16 ENLYFQS---NAMNYELMEPAK-----QARFCVIWLHGLGADGH---DF----VDIVNYFDVSLDEIRFIFPHADIIPVT 80 (246)
T ss_dssp ----------CCCCEEEECCSS-----CCCEEEEEEEC--CCCC---CG----GGGGGGCCSCCTTEEEEEECGGGSCTT
T ss_pred ceEEEec---CCcCceEeCCCC-----cCCeEEEEEcCCCCCHH---HH----HHHHHHhhhcCCCeEEEeCCCCccccc
Confidence 4455554 346788888865 34578999999654422 22 223444432 3788999875422110
Q ss_pred ------chhhHH-------HHhhccCCCchHHHHHHHHHHHH---cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEE
Q 008873 377 ------GLKFEA-------SIKHNCGRIDAEDQLTGAEWLIK---QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440 (550)
Q Consensus 377 ------~~~~~~-------~~~~~~~~~~~~D~~~~~~~l~~---~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~ 440 (550)
+..|.. ..........+....+.++.+.+ +..+|++||++.|+|+||.+++.++.++|+.|+++
T Consensus 81 ~~~~~~~~~Wf~~~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~ 160 (246)
T 4f21_A 81 INMGMQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGI 160 (246)
T ss_dssp THHHHHHHSCTTCCCC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEE
T ss_pred cCCCCCcccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCccccccc
Confidence 111100 00000011123333444444332 24589999999999999999999999999999999
Q ss_pred EEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 441 VSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 441 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
++.++..... ..+.. . ......++|+|++||+.|++||++.+.++++.|++.|.++++.
T Consensus 161 i~~sG~lp~~-------~~~~~----------~----~~~~~~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~ 219 (246)
T 4f21_A 161 MALSTYLPAW-------DNFKG----------K----ITSINKGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYK 219 (246)
T ss_dssp EEESCCCTTH-------HHHST----------T----CCGGGTTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEE
T ss_pred eehhhccCcc-------ccccc----------c----ccccccCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEE
Confidence 9998753210 00000 0 0011235799999999999999999999999999999999999
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.||+.+|.+.. +.++.+.+||++.|
T Consensus 220 ~y~g~gH~i~~-----~~l~~~~~fL~k~l 244 (246)
T 4f21_A 220 HYVGMQHSVCM-----EEIKDISNFIAKTF 244 (246)
T ss_dssp EESSCCSSCCH-----HHHHHHHHHHHHHT
T ss_pred EECCCCCccCH-----HHHHHHHHHHHHHh
Confidence 99999998732 34678999999876
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=170.92 Aligned_cols=199 Identities=15% Similarity=0.168 Sum_probs=136.3
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|+||++||.+++.. .|.. .....|++.||.|+++|+||+|.+... .....+++.+.+..+.+.-
T Consensus 43 ~~~vv~lHG~~~~~~---~~~~---~~~~~l~~~g~~vi~~D~~G~G~s~~~---------~~~~~~~~~~~~~~~l~~l 107 (293)
T 3hss_A 43 GDPVVFIAGRGGAGR---TWHP---HQVPAFLAAGYRCITFDNRGIGATENA---------EGFTTQTMVADTAALIETL 107 (293)
T ss_dssp SEEEEEECCTTCCGG---GGTT---TTHHHHHHTTEEEEEECCTTSGGGTTC---------CSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchh---hcch---hhhhhHhhcCCeEEEEccCCCCCCCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 478999999876543 2321 246778899999999999999755422 1223444444444444331
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhh------------------------h-----
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT------------------------E----- 458 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------------~----- 458 (550)
+.+++.|+|||+||.+++.++.++|++++++++.+|............ .
T Consensus 108 --~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (293)
T 3hss_A 108 --DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRK 185 (293)
T ss_dssp --TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHH
T ss_pred --CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhcccc
Confidence 346899999999999999999999999999999998754321100000 0
Q ss_pred -------------hccCCCCCCc-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 459 -------------KYMGLPSEDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 459 -------------~~~g~~~~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
.....+.... ......+....+.++++|+|+++|++|..+|++.+.++.+.+ .+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~----~~~~ 261 (293)
T 3hss_A 186 TLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADAL----PNGR 261 (293)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHS----TTEE
T ss_pred cccccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHHC----CCce
Confidence 0000000000 011223344567889999999999999999999888877765 4579
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+.++|+++|.+ ..++...+.+.+.+||++
T Consensus 262 ~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~ 290 (293)
T 3hss_A 262 YLQIPDAGHLG-FFERPEAVNTAMLKFFAS 290 (293)
T ss_dssp EEEETTCCTTH-HHHSHHHHHHHHHHHHHT
T ss_pred EEEeCCCcchH-hhhCHHHHHHHHHHHHHh
Confidence 99999999986 335667888999999976
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-19 Score=166.02 Aligned_cols=207 Identities=16% Similarity=0.140 Sum_probs=136.3
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.+|..+++..+. .. |.||++||.+.+.. .|....+.|+++||.|+++|+||+|.+.....
T Consensus 10 ~~g~~l~y~~~g--------~~-~pvvllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~~---- 69 (279)
T 1hkh_A 10 STPIELYYEDQG--------SG-QPVVLIHGYPLDGH-------SWERQTRELLAQGYRVITYDRRGFGGSSKVNT---- 69 (279)
T ss_dssp TEEEEEEEEEES--------SS-EEEEEECCTTCCGG-------GGHHHHHHHHHTTEEEEEECCTTSTTSCCCSS----
T ss_pred CCCeEEEEEecC--------CC-CcEEEEcCCCchhh-------HHhhhHHHHHhCCcEEEEeCCCCCCCCCCCCC----
Confidence 456667665442 11 34888999766532 34556788999999999999999998764311
Q ss_pred hccCCCch----HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCCcCCcccc-----c--
Q 008873 386 HNCGRIDA----EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDGY-----D-- 453 (550)
Q Consensus 386 ~~~~~~~~----~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~~~~~~~~-----~-- 453 (550)
.... +|+.+.++.+ +.+++.|+||||||.+++.++.++|+ +++++|+.++....... .
T Consensus 70 ----~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~ 139 (279)
T 1hkh_A 70 ----GYDYDTFAADLHTVLETL------DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGV 139 (279)
T ss_dssp ----CCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSB
T ss_pred ----CCCHHHHHHHHHHHHHhc------CCCceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCC
Confidence 1223 4444444444 34689999999999999999999998 99999998874321100 0
Q ss_pred --chh------------------hhhccCC----C-CCCcc----------------------ccccCChhhhhhcC---
Q 008873 454 --TFY------------------TEKYMGL----P-SEDPV----------------------GYEYSSVMHHVHKM--- 483 (550)
Q Consensus 454 --~~~------------------~~~~~g~----~-~~~~~----------------------~~~~~~~~~~~~~i--- 483 (550)
..+ ...+.+. . ....+ .+ ..+....+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~i~~~ 218 (279)
T 1hkh_A 140 PQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAW-IEDFRSDVEAVRAA 218 (279)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHH-TCBCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhhhhhHHHHHhhhhhcccCCcccccHHHHHhhhhhhccCcHHHHHHHHHHH-hhchhhhHHHhccC
Confidence 000 0000010 0 00000 00 11222345677
Q ss_pred CCcEEEEecCCCCCCChHHH-HHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 484 KGKLLLVHGMIDENVHFRHT-ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~-~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++|+|+++|++|..+|+..+ ..+.+.+ .+.+++++++++|.+ ..++...+.+.+.+||++
T Consensus 219 ~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 279 (279)
T 1hkh_A 219 GKPTLILHGTKDNILPIDATARRFHQAV----PEADYVEVEGAPHGL-LWTHADEVNAALKTFLAK 279 (279)
T ss_dssp CCCEEEEEETTCSSSCTTTTHHHHHHHC----TTSEEEEETTCCTTH-HHHTHHHHHHHHHHHHHC
T ss_pred CCCEEEEEcCCCccCChHHHHHHHHHhC----CCeeEEEeCCCCccc-hhcCHHHHHHHHHHHhhC
Confidence 99999999999999998876 5555443 467999999999987 345677889999999863
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=171.42 Aligned_cols=236 Identities=13% Similarity=0.050 Sum_probs=148.4
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeec--ccccccchhHh---HHHHhCCcEEEEECCCC-CCCCchhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC--DSWINTVDMRA---QYLRSKGILVWKLDNRG-TARRGLKF 380 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~--~~~~~~~~~~~---~~l~~~G~~vv~~d~rG-~g~~~~~~ 380 (550)
+|..+.+..+.+.+. .+.|+||++||.++..... +.....|..+. +.|++.||.|+++|+|| .|++....
T Consensus 42 ~g~~l~y~~~g~~~~----~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~ 117 (377)
T 2b61_A 42 SYINVAYQTYGTLND----EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPS 117 (377)
T ss_dssp CSEEEEEEEESCCCT----TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTT
T ss_pred cceeEEEEecccccc----cCCCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCc
Confidence 345566666554331 2348999999987765320 00000022223 24668899999999999 56654321
Q ss_pred HHHH------hhccCCCchHHHHHHHHHHHHcCCCCCCceE-EEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc
Q 008873 381 EASI------KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD 453 (550)
Q Consensus 381 ~~~~------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~ 453 (550)
.... ...+....++|+.+.+..+++.- +.+++. |+||||||.+++.++.++|++++++|+.++........
T Consensus 118 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~l--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 195 (377)
T 2b61_A 118 SINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEA 195 (377)
T ss_dssp SBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHH
T ss_pred ccCccccccccccCCcccHHHHHHHHHHHHHHc--CCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCccccccc
Confidence 0000 01112345777777777776653 446887 99999999999999999999999999998864321000
Q ss_pred c----------------------------------------------hhhhhccCCCCC---------Cccccc------
Q 008873 454 T----------------------------------------------FYTEKYMGLPSE---------DPVGYE------ 472 (550)
Q Consensus 454 ~----------------------------------------------~~~~~~~g~~~~---------~~~~~~------ 472 (550)
. .+...+...... ..+.|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (377)
T 2b61_A 196 IGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKK 275 (377)
T ss_dssp HHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHHHHhccccccccccccchHHHHHHHHhhhhh
Confidence 0 000000000000 000000
Q ss_pred ------------------c-------CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcC-CCC
Q 008873 473 ------------------Y-------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP-DER 526 (550)
Q Consensus 473 ------------------~-------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p-~~~ 526 (550)
. .+....+.++++|+|+++|++|..+|++++.+..+.+.+...+.++++++ +++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~g 355 (377)
T 2b61_A 276 FLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYG 355 (377)
T ss_dssp HHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTG
T ss_pred hccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCcccCCccchHHHHHHHHhcCCCceEEEeCCCCC
Confidence 0 01134567889999999999999999976666677776666778999999 999
Q ss_pred CcCCCCCcHHHHHHHHHHHHHHh
Q 008873 527 HMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 527 H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
|.+.. +....+.+.+.+||+++
T Consensus 356 H~~~~-e~p~~~~~~i~~fl~~~ 377 (377)
T 2b61_A 356 HDAFL-VDYDQFEKRIRDGLAGN 377 (377)
T ss_dssp GGHHH-HCHHHHHHHHHHHHHTC
T ss_pred chhhh-cCHHHHHHHHHHHHhcC
Confidence 98733 45678899999999763
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=170.73 Aligned_cols=202 Identities=14% Similarity=0.150 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|+||++||.+++.. .|....+.|++ ||.|+++|+||+|.+....... ......++..+.+..+.+.-
T Consensus 29 ~~vv~lHG~~~~~~-------~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~~~~~----~~~~~~~~~~~~~~~~~~~~- 95 (282)
T 3qvm_A 29 KTVLLAHGFGCDQN-------MWRFMLPELEK-QFTVIVFDYVGSGQSDLESFST----KRYSSLEGYAKDVEEILVAL- 95 (282)
T ss_dssp CEEEEECCTTCCGG-------GGTTTHHHHHT-TSEEEECCCTTSTTSCGGGCCT----TGGGSHHHHHHHHHHHHHHT-
T ss_pred CeEEEECCCCCCcc-------hHHHHHHHHhc-CceEEEEecCCCCCCCCCCCCc----cccccHHHHHHHHHHHHHHc-
Confidence 88999999766543 23345677877 9999999999999886532100 00112455555555554442
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc---------------------------chhhhhcc
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---------------------------TFYTEKYM 461 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------------~~~~~~~~ 461 (550)
+.+++.|+|||+||.+++.++.++|++++++|+.+|........ ........
T Consensus 96 -~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (282)
T 3qvm_A 96 -DLVNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVM 174 (282)
T ss_dssp -TCCSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhcc
Confidence 34789999999999999999999999999999999865322110 00000000
Q ss_pred CCCCC--------------Cc-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 462 GLPSE--------------DP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 462 g~~~~--------------~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
+.... .. ......+....+.++++|+|+++|++|..+|++.+..+.+.+ .+.+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~ 250 (282)
T 3qvm_A 175 GASHSSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENI----PNSQLE 250 (282)
T ss_dssp CTTSCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCCHHHHHHHHHHS----SSEEEE
T ss_pred CCccchhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCCHHHHHHHHHhC----CCCcEE
Confidence 11100 00 000112233556788999999999999999999888877665 457999
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++|+++|.+. .++...+.+.+.+||+++
T Consensus 251 ~~~~~gH~~~-~~~~~~~~~~i~~fl~~~ 278 (282)
T 3qvm_A 251 LIQAEGHCLH-MTDAGLITPLLIHFIQNN 278 (282)
T ss_dssp EEEEESSCHH-HHCHHHHHHHHHHHHHHC
T ss_pred EecCCCCccc-ccCHHHHHHHHHHHHHhc
Confidence 9999999873 355778899999999875
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.5e-18 Score=162.27 Aligned_cols=222 Identities=17% Similarity=0.150 Sum_probs=139.7
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+...++..+|..+++....+. +.|.||++||++++.. .. .....+...||.|+++|+||+|.+..
T Consensus 15 ~~~~~~~~~g~~l~~~~~g~~-------~g~~vvllHG~~~~~~-~~-------~~~~~~~~~~~~vi~~D~~G~G~S~~ 79 (317)
T 1wm1_A 15 DSGWLDTGDGHRIYWELSGNP-------NGKPAVFIHGGPGGGI-SP-------HHRQLFDPERYKVLLFDQRGCGRSRP 79 (317)
T ss_dssp EEEEEECSSSCEEEEEEEECT-------TSEEEEEECCTTTCCC-CG-------GGGGGSCTTTEEEEEECCTTSTTCBS
T ss_pred eeeEEEcCCCcEEEEEEcCCC-------CCCcEEEECCCCCccc-ch-------hhhhhccccCCeEEEECCCCCCCCCC
Confidence 455677778888877665432 1255788999876432 11 11334446799999999999998753
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc--------
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-------- 450 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~-------- 450 (550)
.. ........++.+.+..+.++- +.+++.|+||||||.+++.++.++|++++++|+.++.....
T Consensus 80 ~~------~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 151 (317)
T 1wm1_A 80 HA------SLDNNTTWHLVADIERLREMA--GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQ 151 (317)
T ss_dssp TT------CCTTCSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHT
T ss_pred Cc------ccccccHHHHHHHHHHHHHHc--CCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCCCchhhhhHHhh
Confidence 21 111223555555555555542 34689999999999999999999999999999987543210
Q ss_pred -----cccch-------------------hhhhccCC---------------------CCCCcc----------------
Q 008873 451 -----GYDTF-------------------YTEKYMGL---------------------PSEDPV---------------- 469 (550)
Q Consensus 451 -----~~~~~-------------------~~~~~~g~---------------------~~~~~~---------------- 469 (550)
..... +....... ......
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (317)
T 1wm1_A 152 DGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARI 231 (317)
T ss_dssp SSGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHH
T ss_pred ccchhhcHHHHHHHHhhccchhhcchHHHHHhhhcCCCccccccccccccccccchhhccCCcccccccccchhhhHHHh
Confidence 00000 00000000 000000
Q ss_pred --------cccc-CC-hhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHH
Q 008873 470 --------GYEY-SS-VMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538 (550)
Q Consensus 470 --------~~~~-~~-~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~ 538 (550)
.+.. .. ....+.+++ +|+|+++|++|..+|+..+..+.+.+ .+.++++++++||.+..++....+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~G~~D~~~~~~~~~~l~~~~----p~~~~~~i~~~gH~~~~~~~~~~~ 307 (317)
T 1wm1_A 232 ENHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAW----PEAELHIVEGAGHSYDEPGILHQL 307 (317)
T ss_dssp HHHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHC----TTSEEEEETTCCSSTTSHHHHHHH
T ss_pred hhhhhhcccccccchhhHhhcccccCCCEEEEEecCCCCCCHHHHHHHHhhC----CCceEEEECCCCCCCCCcchHHHH
Confidence 0000 11 233456675 99999999999999998888777655 457899999999987443345666
Q ss_pred HHHHHHHHH
Q 008873 539 EERIWEFIE 547 (550)
Q Consensus 539 ~~~~~~fl~ 547 (550)
.+.+.+|+.
T Consensus 308 ~~~i~~f~~ 316 (317)
T 1wm1_A 308 MIATDRFAG 316 (317)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 777777764
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=168.64 Aligned_cols=205 Identities=11% Similarity=0.052 Sum_probs=137.3
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
..|+||++||.+.+.. . |....+.|++ ||.|+++|+||+|.+..... .......++++.+.+..+.+.
T Consensus 19 ~~p~vv~~HG~~~~~~---~----~~~~~~~l~~-g~~v~~~D~~G~G~S~~~~~----~~~~~~~~~~~~~~~~~~~~~ 86 (269)
T 4dnp_A 19 GERVLVLAHGFGTDQS---A----WNRILPFFLR-DYRVVLYDLVCAGSVNPDFF----DFRRYTTLDPYVDDLLHILDA 86 (269)
T ss_dssp CSSEEEEECCTTCCGG---G----GTTTGGGGTT-TCEEEEECCTTSTTSCGGGC----CTTTCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcHH---H----HHHHHHHHhC-CcEEEEEcCCCCCCCCCCCC----CccccCcHHHHHHHHHHHHHh
Confidence 3489999999766543 2 3334667777 99999999999998854110 011122455666665555554
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc------------h--------------hhhhc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT------------F--------------YTEKY 460 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~------------~--------------~~~~~ 460 (550)
- +.+++.|+|||+||++++.++.++|++++++++.+|......... . +....
T Consensus 87 ~--~~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (269)
T 4dnp_A 87 L--GIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLA 164 (269)
T ss_dssp T--TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred c--CCCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhh
Confidence 2 446899999999999999999999999999999988654211000 0 00000
Q ss_pred cCCCCC-------------Cc-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 461 MGLPSE-------------DP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 461 ~g~~~~-------------~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
.+.... .. ..+...+....+.++++|+|+++|++|..+|+..+.++.+.+ ...+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~ 241 (269)
T 4dnp_A 165 VGADVPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHL---GGKNTVH 241 (269)
T ss_dssp HCSSCHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBCHHHHHHHHHHS---SSCEEEE
T ss_pred ccCCChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccCHHHHHHHHHhC---CCCceEE
Confidence 000000 00 001112334567788999999999999999999888887765 2238999
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++++++|.+. .++...+.+.+.+||+++
T Consensus 242 ~~~~~gH~~~-~~~p~~~~~~i~~fl~~~ 269 (269)
T 4dnp_A 242 WLNIEGHLPH-LSAPTLLAQELRRALSHR 269 (269)
T ss_dssp EEEEESSCHH-HHCHHHHHHHHHHHHC--
T ss_pred EeCCCCCCcc-ccCHHHHHHHHHHHHhhC
Confidence 9999999873 356778889999999763
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-17 Score=164.86 Aligned_cols=213 Identities=17% Similarity=0.154 Sum_probs=153.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++.|||||++|||+..+... ..|+++|+++++.+.+..
T Consensus 181 v~~~~~Spdg~~la~~s~~~~~---------------------------------~~i~~~d~~tg~~~~l~~------- 220 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESGR---------------------------------SALVIQTLANGAVRQVAS------- 220 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSS---------------------------------CEEEEEETTTCCEEEEEC-------
T ss_pred ceeeEEcCCCCEEEEEEecCCC---------------------------------cEEEEEECCCCcEEEeec-------
Confidence 3568899999999998755321 368999999998876632
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWAS 161 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s 161 (550)
....+..++|||||+.|++...+.. ...||++++++++.++++....... .+ .|++|+ +++.+
T Consensus 221 --~~~~~~~~~~spdg~~la~~~~~~g-~~~i~~~d~~~~~~~~l~~~~~~~~-------~~-----~~spdg~~l~~~s 285 (415)
T 2hqs_A 221 --FPRHNGAPAFSPDGSKLAFALSKTG-SLNLYVMDLASGQIRQVTDGRSNNT-------EP-----TWFPDSQNLAFTS 285 (415)
T ss_dssp --CSSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTTCCEEECCCCSSCEE-------EE-----EECTTSSEEEEEE
T ss_pred --CCCcccCEEEcCCCCEEEEEEecCC-CceEEEEECCCCCEEeCcCCCCccc-------ce-----EECCCCCEEEEEE
Confidence 2346778999999999888765542 3579999999999877664322110 01 345554 77778
Q ss_pred ccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCce
Q 008873 162 EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK 241 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~ 241 (550)
+++|..+||++++++++.++++.....+..+ .|||||+.|++.+..++ ...|+.+++ .+. +.+.++.....
T Consensus 286 ~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~spdG~~l~~~~~~~g--~~~i~~~d~--~~~----~~~~l~~~~~~ 356 (415)
T 2hqs_A 286 DQAGRPQVYKVNINGGAPQRITWEGSQNQDA-DVSSDGKFMVMVSSNGG--QQHIAKQDL--ATG----GVQVLSSTFLD 356 (415)
T ss_dssp CTTSSCEEEEEETTSSCCEECCCSSSEEEEE-EECTTSSEEEEEEECSS--CEEEEEEET--TTC----CEEECCCSSSC
T ss_pred CCCCCcEEEEEECCCCCEEEEecCCCcccCe-EECCCCCEEEEEECcCC--ceEEEEEEC--CCC----CEEEecCCCCc
Confidence 7778889999999988888887655455555 49999999999987654 378888898 333 44566655456
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
..+.|+|||+.|++..... ....|+++++. ++..+.|+.
T Consensus 357 ~~~~~spdg~~l~~~s~~~-~~~~l~~~d~~-g~~~~~l~~ 395 (415)
T 2hqs_A 357 ETPSLAPNGTMVIYSSSQG-MGSVLNLVSTD-GRFKARLPA 395 (415)
T ss_dssp EEEEECTTSSEEEEEEEET-TEEEEEEEETT-SCCEEECCC
T ss_pred CCeEEcCCCCEEEEEEcCC-CccEEEEEECC-CCcEEEeeC
Confidence 7789999999988876543 34589999985 444556654
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=164.04 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=150.8
Q ss_pred CCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
+.+.+++.+. .+.++.+++ |+.. . |+||++||.++... ...|... ....+.+++.|++|+++|.+|...
T Consensus 5 ~~~~~~~~s~~~~~~~~v~~--~p~~----~--~~v~llHG~~~~~~-~~~w~~~-~~~~~~l~~~~~~vv~pd~~~~~~ 74 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQF--QGGG----P--HAVYLLDGLRAQDD-YNGWDIN-TPAFEEYYQSGLSVIMPVGGQSSF 74 (280)
T ss_dssp CEEEEEEEETTTTEEEEEEE--ECCS----S--SEEEECCCTTCCSS-SCHHHHH-SCHHHHHTTSSSEEEEECCCTTCT
T ss_pred eEEEEEEECcccCceeEEEE--cCCC----C--CEEEEECCCCCCCC-ccccccc-CcHHHHHhcCCeEEEEECCCCCcc
Confidence 4566777765 456666663 3332 1 48889999853111 1223211 112356778899999999886533
Q ss_pred CchhhHHH-HhhccCCCchHHH--HHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 376 RGLKFEAS-IKHNCGRIDAEDQ--LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 376 ~~~~~~~~-~~~~~~~~~~~D~--~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
+....... ...........+. .+.+.++.++..+++++++|+|+||||++++.++.++|++|+++++.+|..++...
T Consensus 75 ~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~ 154 (280)
T 1dqz_A 75 YTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSES 154 (280)
T ss_dssp TSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTST
T ss_pred ccCCCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCc
Confidence 22100000 0000011223332 23444554433467789999999999999999999999999999999998776432
Q ss_pred c--chh-----------hhhccCCCCCCccccccCChhhhhhcC---CCcEEEEecCCCC--------------CCChHH
Q 008873 453 D--TFY-----------TEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDE--------------NVHFRH 502 (550)
Q Consensus 453 ~--~~~-----------~~~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~--------------~v~~~~ 502 (550)
. ... ....++.+. ...+...+|...+.++ ..|++|.||+.|. .++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~ 232 (280)
T 1dqz_A 155 WWPTLIGLAMNDSGGYNANSMWGPSS--DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRT 232 (280)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCSTT--SHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred chhhhHHHHhhhccCcCHHHhcCCCC--chhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHH
Confidence 1 000 111123222 2345566676665555 5799999999997 578899
Q ss_pred HHHHHHHHHHcC-CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 503 TARLINALVAAR-KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 503 ~~~~~~~l~~~~-~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+.+++++|+++| .++++.++++++|.+. .....+...+.||.+.
T Consensus 233 ~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~ 277 (280)
T 1dqz_A 233 NQTFRDTYAADGGRNGVFNFPPNGTHSWP---YWNEQLVAMKADIQHV 277 (280)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCCceEEEecCCCccChH---HHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999862 2344456677777654
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=168.17 Aligned_cols=225 Identities=14% Similarity=0.147 Sum_probs=140.0
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.+...++..+| .+.+.... .+.|+||++||.+++.. .|......|.++||.|+++|+||+|.+.
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~--------~~~~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~v~~~d~~G~G~s~ 66 (279)
T 4g9e_A 3 INYHELETSHG-RIAVRESE--------GEGAPLLMIHGNSSSGA-------IFAPQLEGEIGKKWRVIAPDLPGHGKST 66 (279)
T ss_dssp CEEEEEEETTE-EEEEEECC--------CCEEEEEEECCTTCCGG-------GGHHHHHSHHHHHEEEEEECCTTSTTSC
T ss_pred eEEEEEEcCCc-eEEEEecC--------CCCCeEEEECCCCCchh-------HHHHHHhHHHhcCCeEEeecCCCCCCCC
Confidence 35566777665 45554332 23478999999876543 2344566666779999999999999886
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc----
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD---- 453 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---- 453 (550)
....... .....++.+.+..+.+.- +.+++.|+|||+||.+++.++.++|++.+.+++.++........
T Consensus 67 ~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~~~~vl~~~~~~~~~~~~~~~~ 139 (279)
T 4g9e_A 67 DAIDPDR-----SYSMEGYADAMTEVMQQL--GIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREEVGQGFK 139 (279)
T ss_dssp CCSCHHH-----HSSHHHHHHHHHHHHHHH--TCCCCEEEEETHHHHHHHHHTTTCTTCCEEEEESCCCCCGGGHHHHBC
T ss_pred CCCCccc-----CCCHHHHHHHHHHHHHHh--CCCceEEEEECchHHHHHHHHhhCCcceeEEEecCCCCCCCccchhhc
Confidence 5311111 112445555554444431 34589999999999999999999999544444444433221100
Q ss_pred c------------------hhhhhccCCCCCC--ccc------------------cccCChhhhhhcCCCcEEEEecCCC
Q 008873 454 T------------------FYTEKYMGLPSED--PVG------------------YEYSSVMHHVHKMKGKLLLVHGMID 495 (550)
Q Consensus 454 ~------------------~~~~~~~g~~~~~--~~~------------------~~~~~~~~~~~~i~~P~lii~G~~D 495 (550)
. .+.......+... ... ....+....+.++++|+|+++|+.|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D 219 (279)
T 4g9e_A 140 SGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDE 219 (279)
T ss_dssp CSTTGGGGGCSCCCHHHHHHHHHHHHCSSCCHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSCEEEEEETTC
T ss_pred cchhhhhcCcccccHHHHHHHHHhhccCcccHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCCEEEEEcCCC
Confidence 0 0000000111100 000 0112233446778999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 496 ENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 496 ~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
..+|++...++..+ ...+.+++++|+++|.+ ..++...+.+.+.+||+++
T Consensus 220 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~gH~~-~~~~p~~~~~~i~~fl~~~ 269 (279)
T 4g9e_A 220 PFVELDFVSKVKFG---NLWEGKTHVIDNAGHAP-FREAPAEFDAYLARFIRDC 269 (279)
T ss_dssp SSBCHHHHTTCCCS---SBGGGSCEEETTCCSCH-HHHSHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHhhc---cCCCCeEEEECCCCcch-HHhCHHHHHHHHHHHHHHh
Confidence 99999877766511 12356889999999986 4466788899999999864
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-18 Score=159.89 Aligned_cols=221 Identities=17% Similarity=0.131 Sum_probs=138.3
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+...+...+|..+++..+.+.+ +.|.||++||.+.+.. .|......|++ ||.|+++|+||+|.+
T Consensus 4 ~~~~~~~~~~~g~~l~~~~~g~~~------~~~~vvllHG~~~~~~-------~~~~~~~~L~~-~~~vi~~Dl~G~G~S 69 (285)
T 3bwx_A 4 EYEDRYWTSSDGLRLHFRAYEGDI------SRPPVLCLPGLTRNAR-------DFEDLATRLAG-DWRVLCPEMRGRGDS 69 (285)
T ss_dssp SSEEEEEECTTSCEEEEEEECBCT------TSCCEEEECCTTCCGG-------GGHHHHHHHBB-TBCEEEECCTTBTTS
T ss_pred ccccCeeecCCCceEEEEEcCCCC------CCCcEEEECCCCcchh-------hHHHHHHHhhc-CCEEEeecCCCCCCC
Confidence 346677888899999988876532 1367888999766532 34445677766 999999999999987
Q ss_pred chhh--HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCC--cCCccc-
Q 008873 377 GLKF--EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP--VTSWDG- 451 (550)
Q Consensus 377 ~~~~--~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~--~~~~~~- 451 (550)
.... .......+ .+|+.+.++.+ ..+++.|+||||||.+++.++.++|++++++|+.++ ......
T Consensus 70 ~~~~~~~~~~~~~~----a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 139 (285)
T 3bwx_A 70 DYAKDPMTYQPMQY----LQDLEALLAQE------GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGL 139 (285)
T ss_dssp CCCSSGGGCSHHHH----HHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHH
T ss_pred CCCCCccccCHHHH----HHHHHHHHHhc------CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcccCcchh
Confidence 6321 10000111 34555555444 235899999999999999999999999999998642 211000
Q ss_pred ------------ccch-----hhhh---------------------ccCCCCC------Ccc---cccc-------CChh
Q 008873 452 ------------YDTF-----YTEK---------------------YMGLPSE------DPV---GYEY-------SSVM 477 (550)
Q Consensus 452 ------------~~~~-----~~~~---------------------~~g~~~~------~~~---~~~~-------~~~~ 477 (550)
...+ .... +...+.. +.. .+.. ....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (285)
T 3bwx_A 140 ERIRGYVGQGRNFETWMHAARALQESSGDVYPDWDITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGATPQVDMW 219 (285)
T ss_dssp HHHHHHTTCCCEESSHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCCCSSCCH
T ss_pred HHHHHHhcCCcccccHHHHHHHHHHhhhhcccccChHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhccccchhh
Confidence 0000 0000 0000000 000 0000 0111
Q ss_pred hhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 478 HHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 478 ~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
..+.++ ++|+|+++|++|..+++....++. +. .+.++++++++||.... +.... ...+.+||++
T Consensus 220 ~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~----~~-~~~~~~~i~~~gH~~~~-e~p~~-~~~i~~fl~~ 284 (285)
T 3bwx_A 220 PLFDALATRPLLVLRGETSDILSAQTAAKMA----SR-PGVELVTLPRIGHAPTL-DEPES-IAAIGRLLER 284 (285)
T ss_dssp HHHHHHTTSCEEEEEETTCSSSCHHHHHHHH----TS-TTEEEEEETTCCSCCCS-CSHHH-HHHHHHHHTT
T ss_pred HHHHHccCCCeEEEEeCCCCccCHHHHHHHH----hC-CCcEEEEeCCCCccchh-hCchH-HHHHHHHHHh
Confidence 123445 799999999999999987665553 34 67899999999998733 34444 4689999865
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-19 Score=183.75 Aligned_cols=225 Identities=11% Similarity=-0.002 Sum_probs=148.3
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
...+...++..||..+++.... +.|+||++||++++.. .|....+.|+++||.|+++|+||+|.
T Consensus 235 ~~~~~~~~~~~dg~~l~~~~~g---------~~p~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~v~~~D~~G~G~ 298 (555)
T 3i28_A 235 SDMSHGYVTVKPRVRLHFVELG---------SGPAVCLCHGFPESWY-------SWRYQIPALAQAGYRVLAMDMKGYGE 298 (555)
T ss_dssp GGSEEEEEEEETTEEEEEEEEC---------SSSEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTT
T ss_pred cccceeEEEeCCCcEEEEEEcC---------CCCEEEEEeCCCCchh-------HHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 3456677888899888877652 2378999999876643 34456788999999999999999998
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT- 454 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 454 (550)
+..... ......+++.+.+..+.+.- +.+++.|+|||+||.+++.++.++|++++++|+.+|.........
T Consensus 299 S~~~~~------~~~~~~~~~~~d~~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 370 (555)
T 3i28_A 299 SSAPPE------IEEYCMEVLCKEMVTFLDKL--GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMS 370 (555)
T ss_dssp SCCCSC------GGGGSHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCTTSC
T ss_pred CCCCCC------cccccHHHHHHHHHHHHHHc--CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCCCCCCcccc
Confidence 754211 00112333333333333221 346899999999999999999999999999998876532110000
Q ss_pred --------------------------------hhhhhccCCCC---------------------C-------Cc---ccc
Q 008873 455 --------------------------------FYTEKYMGLPS---------------------E-------DP---VGY 471 (550)
Q Consensus 455 --------------------------------~~~~~~~g~~~---------------------~-------~~---~~~ 471 (550)
.+....+.... . .. ..|
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (555)
T 3i28_A 371 PLESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFY 450 (555)
T ss_dssp HHHHHHTCGGGHHHHHHHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTCCHHHHHHH
T ss_pred hHHHHhcCCccchhHHhhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccccCHHHHHHH
Confidence 00000000000 0 00 000
Q ss_pred ----cc------------------CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 472 ----EY------------------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 472 ----~~------------------~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
.. .+....+.++++|+|+++|++|..+|+..+..+.+.+ .+.++++++++||.+
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~ 526 (555)
T 3i28_A 451 VQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWI----PHLKRGHIEDCGHWT 526 (555)
T ss_dssp HHHHTTTTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTC----TTCEEEEETTCCSCH
T ss_pred HHHHhcccchhHHHHHHhccccchhhccccccccccCEEEEEeCCCCCcCHHHHHHHHhhC----CCceEEEeCCCCCCc
Confidence 00 0111223578899999999999999998887776544 467899999999986
Q ss_pred CCCCcHHHHHHHHHHHHHHh
Q 008873 530 RRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 530 ~~~~~~~~~~~~~~~fl~~~ 549 (550)
..++...+.+.+.+||++.
T Consensus 527 -~~e~p~~~~~~i~~fl~~~ 545 (555)
T 3i28_A 527 -QMDKPTEVNQILIKWLDSD 545 (555)
T ss_dssp -HHHSHHHHHHHHHHHHHHH
T ss_pred -chhCHHHHHHHHHHHHHhc
Confidence 3356788899999999875
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=164.32 Aligned_cols=201 Identities=11% Similarity=0.088 Sum_probs=136.1
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
..|+||++||.+++.. .|......|++ +|.|+++|+||+|.+..... ....++++.+.+..+.+.
T Consensus 14 ~~~~vvllHG~~~~~~-------~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~ 78 (268)
T 3v48_A 14 DAPVVVLISGLGGSGS-------YWLPQLAVLEQ-EYQVVCYDQRGTGNNPDTLA-------EDYSIAQMAAELHQALVA 78 (268)
T ss_dssp TCCEEEEECCTTCCGG-------GGHHHHHHHHT-TSEEEECCCTTBTTBCCCCC-------TTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccHH-------HHHHHHHHHhh-cCeEEEECCCCCCCCCCCcc-------ccCCHHHHHHHHHHHHHH
Confidence 3478999999766532 34445666654 69999999999998753211 123456666666655554
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc----------------hhh---------hhcc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT----------------FYT---------EKYM 461 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------------~~~---------~~~~ 461 (550)
- +.+++.|+||||||.+++.++.++|++++++|+.++......... .+. ..++
T Consensus 79 l--~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (268)
T 3v48_A 79 A--GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWM 156 (268)
T ss_dssp T--TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred c--CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhh
Confidence 3 346899999999999999999999999999999877532210000 000 0000
Q ss_pred CC--------------CCCCc-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 462 GL--------------PSEDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 462 g~--------------~~~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
.. ..... ..+...+....+.++++|+|+++|++|..+|+..+.++.+.+ ...++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~l~~~~----p~~~~~ 232 (268)
T 3v48_A 157 AARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAAL----PDSQKM 232 (268)
T ss_dssp HTTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSCTHHHHHHHHHC----SSEEEE
T ss_pred hcccccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccCHHHHHHHHHhC----CcCeEE
Confidence 00 00000 001112223456788999999999999999999888877654 467899
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
++|++||.+ ..++...+.+.+.+||.+.
T Consensus 233 ~~~~~GH~~-~~e~p~~~~~~i~~fl~~~ 260 (268)
T 3v48_A 233 VMPYGGHAC-NVTDPETFNALLLNGLASL 260 (268)
T ss_dssp EESSCCTTH-HHHCHHHHHHHHHHHHHHH
T ss_pred EeCCCCcch-hhcCHHHHHHHHHHHHHHh
Confidence 999999986 5577888999999999764
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=165.23 Aligned_cols=212 Identities=18% Similarity=0.115 Sum_probs=136.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCchhhHHHHh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
+|..+++.... +.|.||++||.++... .|......|++ +||.|+++|+||+|.+..... ...
T Consensus 9 ~g~~l~y~~~g---------~~~~vv~lhG~~~~~~-------~~~~~~~~l~~~~g~~v~~~d~~G~G~s~~~~~-~~~ 71 (272)
T 3fsg_A 9 TRSNISYFSIG---------SGTPIIFLHGLSLDKQ-------STCLFFEPLSNVGQYQRIYLDLPGMGNSDPISP-STS 71 (272)
T ss_dssp CTTCCEEEEEC---------CSSEEEEECCTTCCHH-------HHHHHHTTSTTSTTSEEEEECCTTSTTCCCCSS-CSH
T ss_pred cCCeEEEEEcC---------CCCeEEEEeCCCCcHH-------HHHHHHHHHhccCceEEEEecCCCCCCCCCCCC-CCH
Confidence 56667665442 2367889999766543 23333445666 799999999999998764322 111
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-----------
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT----------- 454 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------- 454 (550)
..+ .+|+.+.++.+. +.+++.|+|||+||.+++.++.++|++++++++.+|.........
T Consensus 72 ~~~----~~~~~~~l~~~~-----~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 142 (272)
T 3fsg_A 72 DNV----LETLIEAIEEII-----GARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEE 142 (272)
T ss_dssp HHH----HHHHHHHHHHHH-----TTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECS
T ss_pred HHH----HHHHHHHHHHHh-----CCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhh
Confidence 111 334444444421 346899999999999999999999999999999888742210000
Q ss_pred ------------hhhhhccCCCC----------------CCc---cc----cc-cCChhhhhhcCCCcEEEEecCCCCCC
Q 008873 455 ------------FYTEKYMGLPS----------------EDP---VG----YE-YSSVMHHVHKMKGKLLLVHGMIDENV 498 (550)
Q Consensus 455 ------------~~~~~~~g~~~----------------~~~---~~----~~-~~~~~~~~~~i~~P~lii~G~~D~~v 498 (550)
.+......... ... .. +. ...+...+.++++|+|+++|+.|..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~ 222 (272)
T 3fsg_A 143 DINPVENKEYFADFLSMNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVV 222 (272)
T ss_dssp CCCCCTTGGGHHHHHHHCSEESHHHHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTT
T ss_pred hhhcccCHHHHHHHHHHhccCCCchhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcC
Confidence 00000000000 000 00 00 01111134678899999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 499 HFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 499 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
|++...++.+.+ .+.++.++++++|.+.. ++...+.+.+.+||++.
T Consensus 223 ~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~-~~~~~~~~~i~~fl~~~ 268 (272)
T 3fsg_A 223 GYQEQLKLINHN----ENGEIVLLNRTGHNLMI-DQREAVGFHFDLFLDEL 268 (272)
T ss_dssp CSHHHHHHHTTC----TTEEEEEESSCCSSHHH-HTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc----CCCeEEEecCCCCCchh-cCHHHHHHHHHHHHHHh
Confidence 998887776544 46899999999998733 56788889999999763
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-18 Score=162.12 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=134.7
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhcc
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 388 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~ 388 (550)
..+++....|.+ ..|.||++||.+.+.. .|......|+++||.|+++|+||+|.|...-..
T Consensus 33 ~~l~y~~~G~~~------~g~~vvllHG~~~~~~-------~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~~~------ 93 (297)
T 2xt0_A 33 LRMHYVDEGPRD------AEHTFLCLHGEPSWSF-------LYRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDD------ 93 (297)
T ss_dssp CCEEEEEESCTT------CSCEEEEECCTTCCGG-------GGTTTHHHHHHTTCEEEEECCTTSTTSCEESCG------
T ss_pred eEEEEEEccCCC------CCCeEEEECCCCCcce-------eHHHHHHHHHhCCcEEEEeCCCCCCCCCCCCCc------
Confidence 788888765422 1267889999876532 344457889999999999999999988632110
Q ss_pred CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-c---chhh-------
Q 008873 389 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-D---TFYT------- 457 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-~---~~~~------- 457 (550)
....++++.+.+..+.+.- +.+++.|+||||||.+++.+|.++|++++++|+.++....... . ..+.
T Consensus 94 ~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (297)
T 2xt0_A 94 AVYTFGFHRRSLLAFLDAL--QLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFESWRDFVANSP 171 (297)
T ss_dssp GGCCHHHHHHHHHHHHHHH--TCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHHHHHHHHHTCT
T ss_pred ccCCHHHHHHHHHHHHHHh--CCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHHHHHHHhhccc
Confidence 0112333333333333321 2368999999999999999999999999999998764311000 0 0000
Q ss_pred --------------------hhccCCCCCCc------cccccC--------------Chhhhhh-cCCCcEEEEecCCCC
Q 008873 458 --------------------EKYMGLPSEDP------VGYEYS--------------SVMHHVH-KMKGKLLLVHGMIDE 496 (550)
Q Consensus 458 --------------------~~~~g~~~~~~------~~~~~~--------------~~~~~~~-~i~~P~lii~G~~D~ 496 (550)
..+. .+.... ..+... .....+. ++++|+|+++|++|.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~~D~ 250 (297)
T 2xt0_A 172 DLDVGKLMQRAIPGITDAEVAAYD-APFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPTFMAVGAQDP 250 (297)
T ss_dssp TCCHHHHHHHHSTTCCHHHHHHHH-TTCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCEEEEEETTCS
T ss_pred ccchhHHHhccCccCCHHHHHHHh-ccccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCeEEEEeCCCc
Confidence 0000 000000 000000 0112456 899999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 497 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 497 ~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.+| ..+.++.+.+. +.....+.++++||... . ....+.+.+.+||.
T Consensus 251 ~~~-~~~~~~~~~~p--~~~~~~~~~~~~GH~~~-~-~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 251 VLG-PEVMGMLRQAI--RGCPEPMIVEAGGHFVQ-E-HGEPIARAALAAFG 296 (297)
T ss_dssp SSS-HHHHHHHHHHS--TTCCCCEEETTCCSSGG-G-GCHHHHHHHHHHTT
T ss_pred ccC-hHHHHHHHhCC--CCeeEEeccCCCCcCcc-c-CHHHHHHHHHHHHh
Confidence 999 77777766552 33344445799999974 4 77888899999985
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-19 Score=174.97 Aligned_cols=150 Identities=16% Similarity=0.123 Sum_probs=96.4
Q ss_pred eEEEEEcCC--C--cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeec--ccc--cccchhHhHHHHhCCcEEEEECC
Q 008873 299 DIVQIQAND--G--TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC--DSW--INTVDMRAQYLRSKGILVWKLDN 370 (550)
Q Consensus 299 ~~~~~~~~~--g--~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~--~~~--~~~~~~~~~~l~~~G~~vv~~d~ 370 (550)
.++.+.+.+ | ..+.++++.|.... ..+++|+||++||+++..... ..| ...+..+++.|+++||.|+++|+
T Consensus 47 ~~i~y~t~~~~g~~~~~~g~l~~P~~~~-~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~~D~ 125 (397)
T 3h2g_A 47 AEFTYATIGVEGEPATASGVLLIPGGER-CSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDY 125 (397)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECTT-CCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEEECC
T ss_pred EEEEEEecCCCCCeEEEEEEEEeCCCCC-CCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEEecC
Confidence 456665543 4 46899999997742 236789999999977653210 000 01134457788899999999999
Q ss_pred CCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhh-CC-----CeeEEEEEc
Q 008873 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR-FP-----DVFQCAVSG 443 (550)
Q Consensus 371 rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~-~~-----~~~~~~v~~ 443 (550)
||+|.++...............+.|.+.++..+.++ +..|+++|+|+||||||++++.++.. .+ -.+.+++..
T Consensus 126 ~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~~~~ 205 (397)
T 3h2g_A 126 LGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVASAPI 205 (397)
T ss_dssp TTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEEEEE
T ss_pred CCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEEecc
Confidence 999987422110000000001245666666666554 54567899999999999999888632 12 267888888
Q ss_pred CCcCCc
Q 008873 444 APVTSW 449 (550)
Q Consensus 444 ~~~~~~ 449 (550)
++..++
T Consensus 206 ~~~~~l 211 (397)
T 3h2g_A 206 SGPYAL 211 (397)
T ss_dssp SCCSSH
T ss_pred cccccH
Confidence 777665
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-18 Score=163.86 Aligned_cols=214 Identities=14% Similarity=0.065 Sum_probs=135.5
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhcc
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 388 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~ 388 (550)
..+++....|.+ +.|.||++||.+.+.. .|......|+++||.|+++|.||+|.|...-..
T Consensus 34 ~~l~y~~~G~~~------~g~~vvllHG~~~~~~-------~w~~~~~~L~~~g~rvia~Dl~G~G~S~~~~~~------ 94 (310)
T 1b6g_A 34 LRAHYLDEGNSD------AEDVFLCLHGEPTWSY-------LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDE------ 94 (310)
T ss_dssp CEEEEEEEECTT------CSCEEEECCCTTCCGG-------GGTTTHHHHHHTTCEEEEECCTTSTTSCEESCG------
T ss_pred eEEEEEEeCCCC------CCCEEEEECCCCCchh-------hHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCCc------
Confidence 888888765422 1267889999876543 344457889999999999999999988642100
Q ss_pred CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC--cc----------ccc---
Q 008873 389 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS--WD----------GYD--- 453 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~--~~----------~~~--- 453 (550)
....++++.+.+..+.++- +.+++.|+||||||.+++.+|.++|++++++|+.++... .. ...
T Consensus 95 ~~y~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (310)
T 1b6g_A 95 EDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGF 172 (310)
T ss_dssp GGCCHHHHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTH
T ss_pred CCcCHHHHHHHHHHHHHHc--CCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHH
Confidence 0112333333333333321 236899999999999999999999999999999876431 00 000
Q ss_pred chhhhhcc-------------CCCCCCc---ccccc-------------------C----------Chhhhhh-cCCCcE
Q 008873 454 TFYTEKYM-------------GLPSEDP---VGYEY-------------------S----------SVMHHVH-KMKGKL 487 (550)
Q Consensus 454 ~~~~~~~~-------------g~~~~~~---~~~~~-------------------~----------~~~~~~~-~i~~P~ 487 (550)
..+..... +...... +.|.. . .....+. ++++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~ 252 (310)
T 1b6g_A 173 TAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQT 252 (310)
T ss_dssp HHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEE
T ss_pred HHHHHHhccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCce
Confidence 00000000 0000000 00000 0 0012345 899999
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 488 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 488 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
|+++|++|..+| ..+..+.+.+. +.....+++|++||... . ....+.+.+.+||.+
T Consensus 253 Lvi~G~~D~~~~-~~~~~~~~~ip--~~~~~~i~~~~~GH~~~-~-~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 253 FMAIGMKDKLLG-PDVMYPMKALI--NGCPEPLEIADAGHFVQ-E-FGEQVAREALKHFAE 308 (310)
T ss_dssp EEEEETTCSSSS-HHHHHHHHHHS--TTCCCCEEETTCCSCGG-G-GHHHHHHHHHHHHHH
T ss_pred EEEeccCcchhh-hHHHHHHHhcc--cccceeeecCCcccchh-h-ChHHHHHHHHHHHhc
Confidence 999999999999 77777766652 23333334599999974 4 788999999999975
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=161.72 Aligned_cols=218 Identities=13% Similarity=0.070 Sum_probs=138.0
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCC-CceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGP-CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
...+|..+++....+. ..|+||++||.+ +... .. .|......|++. |.|+++|+||+|.+.....
T Consensus 12 ~~~~g~~l~y~~~g~~-------g~p~vvllHG~~~~~~~-~~----~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~~- 77 (285)
T 1c4x_A 12 FPSGTLASHALVAGDP-------QSPAVVLLHGAGPGAHA-AS----NWRPIIPDLAEN-FFVVAPDLIGFGQSEYPET- 77 (285)
T ss_dssp ECCTTSCEEEEEESCT-------TSCEEEEECCCSTTCCH-HH----HHGGGHHHHHTT-SEEEEECCTTSTTSCCCSS-
T ss_pred EEECCEEEEEEecCCC-------CCCEEEEEeCCCCCCcc-hh----hHHHHHHHHhhC-cEEEEecCCCCCCCCCCCC-
Confidence 3447777877765421 227799999963 2211 11 233345667665 9999999999998753211
Q ss_pred HHhhccCCCchHHH----HHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-c----
Q 008873 383 SIKHNCGRIDAEDQ----LTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-D---- 453 (550)
Q Consensus 383 ~~~~~~~~~~~~D~----~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-~---- 453 (550)
....++++ .+.+..+.++- +.+++.|+||||||.+++.++.++|++++++|+.+|....... .
T Consensus 78 ------~~~~~~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 149 (285)
T 1c4x_A 78 ------YPGHIMSWVGMRVEQILGLMNHF--GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELA 149 (285)
T ss_dssp ------CCSSHHHHHHHHHHHHHHHHHHH--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHH
T ss_pred ------cccchhhhhhhHHHHHHHHHHHh--CCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHH
Confidence 01234444 44333333321 2368999999999999999999999999999998875421100 0
Q ss_pred ---ch--------h---hhhccCCCCCC----------------ccccc---------------cCChhhhhhcCCCcEE
Q 008873 454 ---TF--------Y---TEKYMGLPSED----------------PVGYE---------------YSSVMHHVHKMKGKLL 488 (550)
Q Consensus 454 ---~~--------~---~~~~~g~~~~~----------------~~~~~---------------~~~~~~~~~~i~~P~l 488 (550)
.. . .......+... +..+. .......+.++++|+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 229 (285)
T 1c4x_A 150 RLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVL 229 (285)
T ss_dssp HHHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEE
T ss_pred HHHHHhccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEE
Confidence 00 0 00000011100 00000 0012235677889999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+++|++|..+|+..+..+.+.+ .+.+++++|++||.+ ..++...+.+.+.+||.+
T Consensus 230 ii~G~~D~~~p~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 230 VFHGRQDRIVPLDTSLYLTKHL----KHAELVVLDRCGHWA-QLERWDAMGPMLMEHFRA 284 (285)
T ss_dssp EEEETTCSSSCTHHHHHHHHHC----SSEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHC
T ss_pred EEEeCCCeeeCHHHHHHHHHhC----CCceEEEeCCCCcch-hhcCHHHHHHHHHHHHhc
Confidence 9999999999999888776654 467999999999986 335677888999999975
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=161.25 Aligned_cols=211 Identities=13% Similarity=0.096 Sum_probs=135.3
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCC-CceeecccccccchhHh-HHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGP-CVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~~~-~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
..+++.... +.|.||++||.+ +... ... |.... ..|+++ |.|+++|+||+|.+.....
T Consensus 23 ~~l~y~~~G---------~g~~vvllHG~~~~~~~-~~~----w~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~~----- 82 (286)
T 2puj_A 23 FNIHYNEAG---------NGETVIMLHGGGPGAGG-WSN----YYRNVGPFVDAG-YRVILKDSPGFNKSDAVVM----- 82 (286)
T ss_dssp EEEEEEEEC---------CSSEEEEECCCSTTCCH-HHH----HTTTHHHHHHTT-CEEEEECCTTSTTSCCCCC-----
T ss_pred EEEEEEecC---------CCCcEEEECCCCCCCCc-HHH----HHHHHHHHHhcc-CEEEEECCCCCCCCCCCCC-----
Confidence 777776542 125789999963 2211 112 33345 667665 9999999999998764211
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc------c---ccc---
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD------G---YDT--- 454 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~------~---~~~--- 454 (550)
....++++.+.+..+.++- +.+++.|+||||||.+++.+|.++|++++++|+.+|..... . ...
T Consensus 83 --~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 158 (286)
T 2puj_A 83 --DEQRGLVNARAVKGLMDAL--DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFK 158 (286)
T ss_dssp --SSCHHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHH
T ss_pred --cCcCHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHH
Confidence 0123444444444444432 34689999999999999999999999999999988754210 0 000
Q ss_pred hh-----------hhhccCCCC-CCcc----ccc----------------------cCChhhhhhcCCCcEEEEecCCCC
Q 008873 455 FY-----------TEKYMGLPS-EDPV----GYE----------------------YSSVMHHVHKMKGKLLLVHGMIDE 496 (550)
Q Consensus 455 ~~-----------~~~~~g~~~-~~~~----~~~----------------------~~~~~~~~~~i~~P~lii~G~~D~ 496 (550)
.+ .......+. ...+ .+. .......+.++++|+|+++|++|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~ 238 (286)
T 2puj_A 159 LYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDR 238 (286)
T ss_dssp HHHSCCHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCS
T ss_pred HhhCCcHHHHHHHHHHHhcCCccCCHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECCCC
Confidence 00 000000000 0000 000 011223567788999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 497 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 497 ~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.+|+..+.++.+.+ ...++.+++++||.. ..+....+.+.+.+||++
T Consensus 239 ~~p~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 239 FVPLDHGLKLLWNI----DDARLHVFSKCGAWA-QWEHADEFNRLVIDFLRH 285 (286)
T ss_dssp SSCTHHHHHHHHHS----SSEEEEEESSCCSCH-HHHTHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHC----CCCeEEEeCCCCCCc-cccCHHHHHHHHHHHHhc
Confidence 99999888776654 467999999999987 345677888999999975
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-18 Score=163.77 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=136.5
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+...+ ..+|..+++.... +.|.||++||.+++.. .|......|++ ||.|+++|+||+|.+..
T Consensus 14 ~~~~~-~~~g~~l~~~~~g---------~~~~vv~lHG~~~~~~-------~~~~~~~~l~~-~~~v~~~D~~G~G~S~~ 75 (306)
T 3r40_A 14 GSEWI-NTSSGRIFARVGG---------DGPPLLLLHGFPQTHV-------MWHRVAPKLAE-RFKVIVADLPGYGWSDM 75 (306)
T ss_dssp EEEEE-CCTTCCEEEEEEE---------CSSEEEEECCTTCCGG-------GGGGTHHHHHT-TSEEEEECCTTSTTSCC
T ss_pred ceEEE-EeCCEEEEEEEcC---------CCCeEEEECCCCCCHH-------HHHHHHHHhcc-CCeEEEeCCCCCCCCCC
Confidence 44444 4478888877653 2268999999876543 23445677877 99999999999998754
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-----
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----- 453 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~----- 453 (550)
..... .......+++.+.+..+.+.- +.+++.|+|||+||.+++.++.++|++++++|+.++........
T Consensus 76 ~~~~~---~~~~~~~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~ 150 (306)
T 3r40_A 76 PESDE---QHTPYTKRAMAKQLIEAMEQL--GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEYWQRMNRA 150 (306)
T ss_dssp CCCCT---TCGGGSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHHHHHCSHH
T ss_pred CCCCc---ccCCCCHHHHHHHHHHHHHHh--CCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccchhhhhhh
Confidence 32110 000123455555555555442 34689999999999999999999999999999998753211000
Q ss_pred --------------------------chhhh----hccC---CCCCCccc---ccc--CCh-------------------
Q 008873 454 --------------------------TFYTE----KYMG---LPSEDPVG---YEY--SSV------------------- 476 (550)
Q Consensus 454 --------------------------~~~~~----~~~g---~~~~~~~~---~~~--~~~------------------- 476 (550)
..+.. .... ......+. +.. ..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (306)
T 3r40_A 151 YALKIYHWSFLAQPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRAGAYADFE 230 (306)
T ss_dssp HHHHSTHHHHHTSCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhHHHHHhhcccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHhcccccch
Confidence 00000 0000 00011100 000 000
Q ss_pred -----hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 477 -----MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 477 -----~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
...+.++++|+|+++|++|..+|+....+.++++ ..+.++.++ +++|.+ ..++...+.+.+.+||++.
T Consensus 231 ~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~-~~gH~~-~~e~p~~~~~~i~~fl~~~ 303 (306)
T 3r40_A 231 HDKIDVEAGNKIPVPMLALWGASGIAQSAATPLDVWRKW---ASDVQGAPI-ESGHFL-PEEAPDQTAEALVRFFSAA 303 (306)
T ss_dssp HHHHHHHHTCCBCSCEEEEEETTCC------CHHHHHHH---BSSEEEEEE-SSCSCH-HHHSHHHHHHHHHHHHHC-
T ss_pred hhhhhhhhccCCCcceEEEEecCCcccCchhHHHHHHhh---cCCCeEEEe-cCCcCc-hhhChHHHHHHHHHHHHhc
Confidence 0024778899999999999999865555555544 356777888 679986 4466788999999999763
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-19 Score=173.46 Aligned_cols=212 Identities=11% Similarity=0.075 Sum_probs=131.7
Q ss_pred CceEEEEEcCCCCceeecc--cccc-------cchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCC----Cch
Q 008873 327 PYKTLISVYGGPCVQLVCD--SWIN-------TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR----IDA 393 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~--~~~~-------~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~----~~~ 393 (550)
+.|+||++||++++..... .|.. .+..+.+.|+++||.|+++|+||+|.+....... ...... ...
T Consensus 49 ~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~-~~~~~~~~~~~~~ 127 (354)
T 2rau_A 49 GNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQ-LSFTANWGWSTWI 127 (354)
T ss_dssp CEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGG-GGGGTTCSHHHHH
T ss_pred CCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccc-cccccCCcHHHHH
Confidence 4588999999876643111 2210 0114578889999999999999998775321110 000011 125
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCc----ccc--------cch-----
Q 008873 394 EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSW----DGY--------DTF----- 455 (550)
Q Consensus 394 ~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~----~~~--------~~~----- 455 (550)
+|+.++++++.++ .+.++++|+|||+||.+++.++.++ |++++++|+.++.... ... ...
T Consensus 128 ~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (354)
T 2rau_A 128 SDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGI 205 (354)
T ss_dssp HHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhcc
Confidence 6788888888765 2457899999999999999999998 9999999998553211 000 000
Q ss_pred ------------------------------------hhh-hc---cCCCCCCc----ccc----------------ccCC
Q 008873 456 ------------------------------------YTE-KY---MGLPSEDP----VGY----------------EYSS 475 (550)
Q Consensus 456 ------------------------------------~~~-~~---~g~~~~~~----~~~----------------~~~~ 475 (550)
... .+ ...+.... ..+ ...+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (354)
T 2rau_A 206 YVIPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERD 285 (354)
T ss_dssp CEEECSSSTTCTHHHHHHHSTTSCCSSTTSSSHHHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTT
T ss_pred cccCCCchhhhHHHHHhccccccCccccchhhHHHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCcc
Confidence 000 00 00000000 000 0011
Q ss_pred hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC--CCCCcHHHHHHHHHHHHHHh
Q 008873 476 VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP--RRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 476 ~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~--~~~~~~~~~~~~~~~fl~~~ 549 (550)
....+.++++|+|+++|++|..+|. .+ + ......+++++|++||.. ..++....+.+.+.+||+++
T Consensus 286 ~~~~l~~i~~P~Lii~G~~D~~~p~-~~----~---~l~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 286 LKFDYEGILVPTIAFVSERFGIQIF-DS----K---ILPSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp CCCCCTTCCCCEEEEEETTTHHHHB-CG----G---GSCTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred cccccccCCCCEEEEecCCCCCCcc-ch----h---hhccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 1223457889999999999987552 22 1 223567999999999986 34456688999999999875
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-17 Score=146.97 Aligned_cols=181 Identities=10% Similarity=0.025 Sum_probs=121.3
Q ss_pred ceEEEEEcCCCCceeecccccccchhHh-HHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~-~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
.|+||++||.+++.. ..| .... ..|+++||.|+++|+|.++.. ...+..+.+..+.+.
T Consensus 4 ~p~vv~~HG~~~~~~--~~~----~~~~~~~l~~~g~~v~~~d~~~~~~~---------------~~~~~~~~~~~~~~~ 62 (192)
T 1uxo_A 4 TKQVYIIHGYRASST--NHW----FPWLKKRLLADGVQADILNMPNPLQP---------------RLEDWLDTLSLYQHT 62 (192)
T ss_dssp CCEEEEECCTTCCTT--STT----HHHHHHHHHHTTCEEEEECCSCTTSC---------------CHHHHHHHHHTTGGG
T ss_pred CCEEEEEcCCCCCcc--hhH----HHHHHHHHHhCCcEEEEecCCCCCCC---------------CHHHHHHHHHHHHHh
Confidence 488999999766532 122 2223 468889999999999933211 234444444433333
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCC--eeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPD--VFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMK 484 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 484 (550)
+ .+++.++||||||.+++.++.++|+ +++++++.+|........... ..+...+ .....+.+++
T Consensus 63 --~-~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~ 128 (192)
T 1uxo_A 63 --L-HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQML-DEFTQGS----------FDHQKIIESA 128 (192)
T ss_dssp --C-CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGGG-GGGTCSC----------CCHHHHHHHE
T ss_pred --c-cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccccchhh-hhhhhcC----------CCHHHHHhhc
Confidence 2 4789999999999999999999999 999999999875432110000 1111111 1124556777
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC--CCcHHHHHHHHHHHHHH
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR--HRDRIYMEERIWEFIER 548 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~--~~~~~~~~~~~~~fl~~ 548 (550)
+|+|+++|++|..+|++.+.++.+.+ +.++.++++++|.+.. ++....+.+.+.+|+++
T Consensus 129 ~P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~l~~ 189 (192)
T 1uxo_A 129 KHRAVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 189 (192)
T ss_dssp EEEEEEEETTCSSSCHHHHHHHHHHT-----TCEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred CCEEEEecCCCCcCCHHHHHHHHHhc-----CceEEEeCCCcCcccccccccHHHHHHHHHHHHHH
Confidence 89999999999999999988887765 4689999999998732 22233455666666653
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-18 Score=163.31 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=136.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh--h--H
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK--F--E 381 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~--~--~ 381 (550)
.+|..+++.... +.|.||++||.+++.. .|......|+++||.|+++|+||+|.+... . .
T Consensus 18 ~~g~~l~y~~~G---------~g~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~~~~~ 81 (328)
T 2cjp_A 18 VNGLNMHLAELG---------EGPTILFIHGFPELWY-------SWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPS 81 (328)
T ss_dssp ETTEEEEEEEEC---------SSSEEEEECCTTCCGG-------GGHHHHHHHHTTTCEEEEECCTTSTTCBCCCTTCGG
T ss_pred CCCcEEEEEEcC---------CCCEEEEECCCCCchH-------HHHHHHHHHHHCCcEEEEECCCCCCCCCCcCcCCcc
Confidence 477778777552 1268899999876532 345567788889999999999999988642 1 1
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc-----c-----
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD-----G----- 451 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~-----~----- 451 (550)
......+ .+|+.+.++.+.. +.+++.|+||||||.+++.++.++|++++++|+.++..... .
T Consensus 82 ~~~~~~~----a~dl~~~l~~l~~----~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 153 (328)
T 2cjp_A 82 KFSILHL----VGDVVALLEAIAP----NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKRNPKMNVVEGLK 153 (328)
T ss_dssp GGSHHHH----HHHHHHHHHHHCT----TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCSSCCHHHHHH
T ss_pred cccHHHH----HHHHHHHHHHhcC----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccCCCcccccCChHHHHH
Confidence 0001111 4455555555421 24689999999999999999999999999999876432100 0
Q ss_pred -------ccchh------------------hhhccC----C----CCC-----------------Ccc---ccc----c-
Q 008873 452 -------YDTFY------------------TEKYMG----L----PSE-----------------DPV---GYE----Y- 473 (550)
Q Consensus 452 -------~~~~~------------------~~~~~g----~----~~~-----------------~~~---~~~----~- 473 (550)
+...+ ...++. . +.. ..+ .+. .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (328)
T 2cjp_A 154 AIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQT 233 (328)
T ss_dssp HHHCTTBHHHHTSSTTHHHHHHHHHCHHHHHHHHHTCCCSSCCBCCTTCTTTTSCCCCGGGGTTSCHHHHHHHHHHHHHH
T ss_pred hhcccchHHHhhhCCCcHHHHhhccCHHHHHHHHhcccCCCcccccccchhhhcccccccCcCCCCHHHHHHHHHHhccc
Confidence 00000 000000 0 000 000 000 0
Q ss_pred -----------CC-hh-----hhhhcCCCcEEEEecCCCCCCChHHHHHHH--HHHHHcCCCe-EEEEcCCCCCcCCCCC
Q 008873 474 -----------SS-VM-----HHVHKMKGKLLLVHGMIDENVHFRHTARLI--NALVAARKPY-EILIFPDERHMPRRHR 533 (550)
Q Consensus 474 -----------~~-~~-----~~~~~i~~P~lii~G~~D~~v~~~~~~~~~--~~l~~~~~~~-~~~~~p~~~H~~~~~~ 533 (550)
.. .. ..+.++++|+|+++|++|..+|+..+.++. +.+.+.-.+. ++.++|++||.+ ..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~gH~~-~~e 312 (328)
T 2cjp_A 234 GFTGAVNYYRALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFV-SQE 312 (328)
T ss_dssp CSHHHHHHHHTHHHHHHHTGGGTTCCCCSCEEEEEETTCGGGGSTTHHHHHHHSHHHHHSTTBCCCEEETTCCSCH-HHH
T ss_pred CCcchHHHHHhcccchhhhhhccCCccCCCEEEEEeCCcccccCcchhhhhhhhhHHHHhcCCeeEEEcCCCCCCc-chh
Confidence 00 00 023567899999999999999875433333 3444433456 789999999987 345
Q ss_pred cHHHHHHHHHHHHHH
Q 008873 534 DRIYMEERIWEFIER 548 (550)
Q Consensus 534 ~~~~~~~~~~~fl~~ 548 (550)
....+.+.+.+||++
T Consensus 313 ~p~~~~~~i~~fl~~ 327 (328)
T 2cjp_A 313 RPHEISKHIYDFIQK 327 (328)
T ss_dssp SHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 678899999999965
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-17 Score=158.24 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=86.7
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.+...++..+|..+++..+.+. +.|.||++||++++... ......+...||.|+++|+||+|.|.
T Consensus 11 ~~~~~~~~~~g~~l~y~~~G~~-------~g~pvvllHG~~~~~~~--------~~~~~~~~~~~~~vi~~D~~G~G~S~ 75 (313)
T 1azw_A 11 YQQGSLKVDDRHTLYFEQCGNP-------HGKPVVMLHGGPGGGCN--------DKMRRFHDPAKYRIVLFDQRGSGRST 75 (313)
T ss_dssp SEEEEEECSSSCEEEEEEEECT-------TSEEEEEECSTTTTCCC--------GGGGGGSCTTTEEEEEECCTTSTTSB
T ss_pred cccceEEcCCCCEEEEEecCCC-------CCCeEEEECCCCCcccc--------HHHHHhcCcCcceEEEECCCCCcCCC
Confidence 3555677778888887766432 12567899998764321 11123444689999999999999885
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
... ........++.+.+..+.+.- ..+++.|+||||||.+++.++.++|++++++|+.++.
T Consensus 76 ~~~------~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 76 PHA------DLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp STT------CCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCc------ccccccHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 321 111223555555555555442 3458999999999999999999999999999988764
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=161.42 Aligned_cols=215 Identities=13% Similarity=0.061 Sum_probs=137.2
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCC-CceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGP-CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
.+|..+++.... +.|.||++||.+ +... ... |......|++. |.|+++|+||+|.+. ...
T Consensus 23 ~~g~~l~y~~~g---------~g~~vvllHG~~~~~~~-~~~----~~~~~~~L~~~-~~vi~~Dl~G~G~S~-~~~--- 83 (296)
T 1j1i_A 23 AGGVETRYLEAG---------KGQPVILIHGGGAGAES-EGN----WRNVIPILARH-YRVIAMDMLGFGKTA-KPD--- 83 (296)
T ss_dssp ETTEEEEEEEEC---------CSSEEEEECCCSTTCCH-HHH----HTTTHHHHTTT-SEEEEECCTTSTTSC-CCS---
T ss_pred ECCEEEEEEecC---------CCCeEEEECCCCCCcch-HHH----HHHHHHHHhhc-CEEEEECCCCCCCCC-CCC---
Confidence 478778776432 125788999964 2211 112 33345666655 999999999999875 211
Q ss_pred hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc----cch-----
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY----DTF----- 455 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~----- 455 (550)
.....++..+.+..+.+.-.+ .+++.|+||||||.+++.++.++|++++++|+.+|....... ...
T Consensus 84 ----~~~~~~~~~~dl~~~l~~l~~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 158 (296)
T 1j1i_A 84 ----IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDF 158 (296)
T ss_dssp ----SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCS
T ss_pred ----CCCCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccC
Confidence 112344555444444443222 168999999999999999999999999999998875421000 000
Q ss_pred -------hhhhccCCCCC-Ccc----------------ccc-----------cCChhhhhhcCCCcEEEEecCCCCCCCh
Q 008873 456 -------YTEKYMGLPSE-DPV----------------GYE-----------YSSVMHHVHKMKGKLLLVHGMIDENVHF 500 (550)
Q Consensus 456 -------~~~~~~g~~~~-~~~----------------~~~-----------~~~~~~~~~~i~~P~lii~G~~D~~v~~ 500 (550)
........+.. ..+ .+. .......+.++++|+|+++|++|..+|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~~~ 238 (296)
T 1j1i_A 159 TREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPV 238 (296)
T ss_dssp CHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCH
T ss_pred CchHHHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEECCCcccCH
Confidence 00001111110 000 000 0012234677899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 501 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 501 ~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+.+.++.+.+ .+.++++++++||.+ ..++...+.+.+.+||.++
T Consensus 239 ~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 282 (296)
T 1j1i_A 239 ETAYKFLDLI----DDSWGYIIPHCGHWA-MIEHPEDFANATLSFLSLR 282 (296)
T ss_dssp HHHHHHHHHC----TTEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHC----CCCEEEEECCCCCCc-hhcCHHHHHHHHHHHHhcc
Confidence 9888776654 467899999999987 3356788899999999875
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.9e-19 Score=167.26 Aligned_cols=212 Identities=13% Similarity=0.048 Sum_probs=140.9
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|..+.+..+.+. +.|+||++||.+++.. . |......|+ .||.|+++|+||+|.+.....
T Consensus 18 ~g~~l~~~~~g~~-------~~~~vl~lHG~~~~~~---~----~~~~~~~l~-~~~~v~~~d~~G~G~s~~~~~----- 77 (299)
T 3g9x_A 18 LGERMHYVDVGPR-------DGTPVLFLHGNPTSSY---L----WRNIIPHVA-PSHRCIAPDLIGMGKSDKPDL----- 77 (299)
T ss_dssp TTEEEEEEEESCS-------SSCCEEEECCTTCCGG---G----GTTTHHHHT-TTSCEEEECCTTSTTSCCCCC-----
T ss_pred CCeEEEEEecCCC-------CCCEEEEECCCCccHH---H----HHHHHHHHc-cCCEEEeeCCCCCCCCCCCCC-----
Confidence 7888888777543 2367899999876643 2 333456664 699999999999998754211
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc---cchh-------
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---DTFY------- 456 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~------- 456 (550)
....+++.+.+..+.+.- +.+++.|+|||+||.+++.++.++|++++++|+.++....... ....
T Consensus 78 ---~~~~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (299)
T 3g9x_A 78 ---DYFFDDHVRYLDAFIEAL--GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAF 152 (299)
T ss_dssp ---CCCHHHHHHHHHHHHHHT--TCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGGGHHHHHHH
T ss_pred ---cccHHHHHHHHHHHHHHh--CCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchHHHHHHHHH
Confidence 234666666666665542 4468999999999999999999999999999998754432211 0000
Q ss_pred ----------------hhhcc---CCCCCCc---ccc-----------------ccC--------------ChhhhhhcC
Q 008873 457 ----------------TEKYM---GLPSEDP---VGY-----------------EYS--------------SVMHHVHKM 483 (550)
Q Consensus 457 ----------------~~~~~---g~~~~~~---~~~-----------------~~~--------------~~~~~~~~i 483 (550)
..... ....... ..+ ... +....+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 232 (299)
T 3g9x_A 153 RTADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQS 232 (299)
T ss_dssp TSSSHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHC
T ss_pred cCCCcchhhhccchhhHHHhhhhhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhhhhhhcccC
Confidence 00000 0000000 000 000 112235778
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++|+|+++|++|..+|++....+.+.+ ..+++.++++++|.+ ..++...+.+.+.+++.+
T Consensus 233 ~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~~~~~ 292 (299)
T 3g9x_A 233 PVPKLLFWGTPGVLIPPAEAARLAESL----PNCKTVDIGPGLHYL-QEDNPDLIGSEIARWLPA 292 (299)
T ss_dssp CSCEEEEEEEECSSSCHHHHHHHHHHS----TTEEEEEEEEESSCH-HHHCHHHHHHHHHHHSGG
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHhhC----CCCeEEEeCCCCCcc-hhcCHHHHHHHHHHHHhh
Confidence 999999999999999999888877665 457899999999987 345667777777777643
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=160.52 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=125.8
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.||++||.+++.. .|......|++. |.|+++|+||+|.+..... ..... ..+|+.+.++.+
T Consensus 16 ~~~vvllHG~~~~~~-------~w~~~~~~L~~~-~~via~Dl~G~G~S~~~~~-~~~~~----~a~dl~~~l~~l---- 78 (255)
T 3bf7_A 16 NSPIVLVHGLFGSLD-------NLGVLARDLVND-HNIIQVDVRNHGLSPREPV-MNYPA----MAQDLVDTLDAL---- 78 (255)
T ss_dssp CCCEEEECCTTCCTT-------TTHHHHHHHTTT-SCEEEECCTTSTTSCCCSC-CCHHH----HHHHHHHHHHHH----
T ss_pred CCCEEEEcCCcccHh-------HHHHHHHHHHhh-CcEEEecCCCCCCCCCCCC-cCHHH----HHHHHHHHHHHc----
Confidence 367899999766532 344456777665 9999999999998764210 00001 134444444443
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc--CCccc-ccchh----------------hhhccCCCCCCc
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV--TSWDG-YDTFY----------------TEKYMGLPSEDP 468 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~--~~~~~-~~~~~----------------~~~~~g~~~~~~ 468 (550)
+.+++.|+||||||.+++.++.++|++++++|+.++. ..... ..... ....+.......
T Consensus 79 --~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (255)
T 3bf7_A 79 --QIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEE 156 (255)
T ss_dssp --TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCH
T ss_pred --CCCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchh
Confidence 2368999999999999999999999999999886432 11100 00000 000000000000
Q ss_pred ---c---------ccccCCh------h------hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC
Q 008873 469 ---V---------GYEYSSV------M------HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524 (550)
Q Consensus 469 ---~---------~~~~~~~------~------~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~ 524 (550)
. .+. ... . ..+.++++|+|+++|++|..+++..+..+.+.+ .+.+++++|+
T Consensus 157 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~ 231 (255)
T 3bf7_A 157 GVIQFLLKSFVDGEWR-FNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQF----PQARAHVIAG 231 (255)
T ss_dssp HHHHHHHTTEETTEES-SCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTCGGGHHHHHHHC----TTEEECCBTT
T ss_pred HHHHHHHHhccCCcee-ecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCCHHHHHHHHHHC----CCCeEEEeCC
Confidence 0 000 000 0 113467899999999999999988776665543 4689999999
Q ss_pred CCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 525 ERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 525 ~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+||.+ ..+....+.+.+.+||++|
T Consensus 232 ~gH~~-~~e~p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 232 AGHWV-HAEKPDAVLRAIRRYLNDH 255 (255)
T ss_dssp CCSCH-HHHCHHHHHHHHHHHHHTC
T ss_pred CCCcc-ccCCHHHHHHHHHHHHhcC
Confidence 99987 3456678899999999875
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-18 Score=166.22 Aligned_cols=122 Identities=15% Similarity=0.069 Sum_probs=86.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.+|..+++....|.+ ++.|+||++||.+++.. . |......|+++||.|+++|+||+|.+......
T Consensus 10 ~~g~~l~y~~~G~~~-----~~~~~vv~~hG~~~~~~---~----~~~~~~~l~~~g~~vi~~d~~g~g~s~~~~~~--- 74 (356)
T 2e3j_A 10 CRGTRIHAVADSPPD-----QQGPLVVLLHGFPESWY---S----WRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQ--- 74 (356)
T ss_dssp ETTEEEEEEEECCTT-----CCSCEEEEECCTTCCGG---G----GTTTHHHHHHTTCEEEEECCTTSTTSCCCCSG---
T ss_pred cCCeEEEEEEecCCC-----CCCCEEEEECCCCCcHH---H----HHHHHHHHHHcCCEEEEEcCCCCCCCCCCCcc---
Confidence 478889998887653 23478999999876532 2 34457788889999999999999877532110
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
......++.+.+..+.+. ++.+++.|+|||+||.+++.++.++|++++++|+.++..
T Consensus 75 ---~~~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 75 ---KAYRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp ---GGGSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred ---cccCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 011233444433333332 245689999999999999999999999999999987654
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=168.04 Aligned_cols=209 Identities=15% Similarity=0.110 Sum_probs=137.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhc
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 387 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~ 387 (550)
+..+.+..+.+. .|+||++||.+.... .| ...+...||.|+++|+||+|.+.....
T Consensus 69 ~~~~~~~~~g~~--------~~~vv~~hG~~~~~~-------~~---~~~~~~lg~~Vi~~D~~G~G~S~~~~~------ 124 (330)
T 3p2m_A 69 AGAISALRWGGS--------APRVIFLHGGGQNAH-------TW---DTVIVGLGEPALAVDLPGHGHSAWRED------ 124 (330)
T ss_dssp ETTEEEEEESSS--------CCSEEEECCTTCCGG-------GG---HHHHHHSCCCEEEECCTTSTTSCCCSS------
T ss_pred CceEEEEEeCCC--------CCeEEEECCCCCccc-------hH---HHHHHHcCCeEEEEcCCCCCCCCCCCC------
Confidence 345777766432 267899999866532 22 334445599999999999987752111
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc-----------------
Q 008873 388 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD----------------- 450 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~----------------- 450 (550)
.....+++.+.+..+.+.- +.+++.|+|||+||.+++.++.++|++++++|+.+|.....
T Consensus 125 -~~~~~~~~a~dl~~~l~~l--~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (330)
T 3p2m_A 125 -GNYSPQLNSETLAPVLREL--APGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALM 201 (330)
T ss_dssp -CBCCHHHHHHHHHHHHHHS--STTCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC--------
T ss_pred -CCCCHHHHHHHHHHHHHHh--CCCCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhh
Confidence 2233555555555555442 45689999999999999999999999999999998753210
Q ss_pred -------cccchhhhhccCCCCCCc-----------------------cccccC----ChhhhhhcCCCcEEEEecCCCC
Q 008873 451 -------GYDTFYTEKYMGLPSEDP-----------------------VGYEYS----SVMHHVHKMKGKLLLVHGMIDE 496 (550)
Q Consensus 451 -------~~~~~~~~~~~g~~~~~~-----------------------~~~~~~----~~~~~~~~i~~P~lii~G~~D~ 496 (550)
.............+.... ..+... .....+.++++|+|+++|++|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ 281 (330)
T 3p2m_A 202 HGEREFPSFQAMLDLTIAAAPHRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSG 281 (330)
T ss_dssp ---CCBSCHHHHHHHHHHHCTTSCHHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCEEEEEETTCC
T ss_pred cCCccccCHHHHHHHHHhcCCCCCHHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCEEEEEeCCCC
Confidence 000000000000000000 000000 1124577899999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCeE-EEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 497 NVHFRHTARLINALVAARKPYE-ILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 497 ~v~~~~~~~~~~~l~~~~~~~~-~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.+|++.+.++.+.+ ...+ ++++++++|.+ ..+....+.+.+.+||++
T Consensus 282 ~v~~~~~~~l~~~~----~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 282 FVTDQDTAELHRRA----THFRGVHIVEKSGHSV-QSDQPRALIEIVRGVLDT 329 (330)
T ss_dssp SSCHHHHHHHHHHC----SSEEEEEEETTCCSCH-HHHCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhC----CCCeeEEEeCCCCCCc-chhCHHHHHHHHHHHHhc
Confidence 99999888777654 4567 99999999987 445677888999999865
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-18 Score=160.23 Aligned_cols=217 Identities=16% Similarity=0.104 Sum_probs=137.1
Q ss_pred cCCC-cEEEEEEEcCCCCCCCCCCceEEEEEcCC-CCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 305 ANDG-TVLYGALYKPDESRYGPPPYKTLISVYGG-PCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 305 ~~~g-~~l~~~~~~P~~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
..+| ..+++....+ ++.|.||++||. |+... ...| ......|++. |.|+++|+||+|.+.....
T Consensus 19 ~~~g~~~l~y~~~G~-------g~~~~vvllHG~~pg~~~-~~~w----~~~~~~L~~~-~~via~Dl~G~G~S~~~~~- 84 (291)
T 2wue_A 19 DVDGPLKLHYHEAGV-------GNDQTVVLLHGGGPGAAS-WTNF----SRNIAVLARH-FHVLAVDQPGYGHSDKRAE- 84 (291)
T ss_dssp ESSSEEEEEEEEECT-------TCSSEEEEECCCCTTCCH-HHHT----TTTHHHHTTT-SEEEEECCTTSTTSCCCSC-
T ss_pred EeCCcEEEEEEecCC-------CCCCcEEEECCCCCccch-HHHH----HHHHHHHHhc-CEEEEECCCCCCCCCCCCC-
Confidence 3478 7888776532 223689999996 32211 1223 3345667665 9999999999998764211
Q ss_pred HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc----cc-----cc
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW----DG-----YD 453 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~----~~-----~~ 453 (550)
....++++.+.+..+.++- +.+++.|+||||||.+++.+|.++|++++++|+.++.... .. ..
T Consensus 85 ------~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 156 (291)
T 2wue_A 85 ------HGQFNRYAAMALKGLFDQL--GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVK 156 (291)
T ss_dssp ------CSSHHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHH
T ss_pred ------CCcCHHHHHHHHHHHHHHh--CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhH
Confidence 0122344444443333321 3368999999999999999999999999999998875421 00 00
Q ss_pred c---hh-----------hhhccCCCC--------------CCcccc----------cc--CC-hh--hhhhcCCCcEEEE
Q 008873 454 T---FY-----------TEKYMGLPS--------------EDPVGY----------EY--SS-VM--HHVHKMKGKLLLV 490 (550)
Q Consensus 454 ~---~~-----------~~~~~g~~~--------------~~~~~~----------~~--~~-~~--~~~~~i~~P~lii 490 (550)
. .+ .......+. .++..+ .. .. .. ..+.++++|+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi 236 (291)
T 2wue_A 157 RLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLI 236 (291)
T ss_dssp HHHHHHHSCCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSCEEEE
T ss_pred HHHHHhccCCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCCeEEE
Confidence 0 00 000000000 000000 00 00 11 4567788999999
Q ss_pred ecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 491 HGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 491 ~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+|++|..+|+..+.++.+.+ .+.++++++++||.+ ..++...+.+.+.+||++
T Consensus 237 ~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 289 (291)
T 2wue_A 237 WGREDRVNPLDGALVALKTI----PRAQLHVFGQCGHWV-QVEKFDEFNKLTIEFLGG 289 (291)
T ss_dssp EETTCSSSCGGGGHHHHHHS----TTEEEEEESSCCSCH-HHHTHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCHHHHHHHHHHC----CCCeEEEeCCCCCCh-hhhCHHHHHHHHHHHHhc
Confidence 99999999998887776554 467999999999987 335577888999999864
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=160.84 Aligned_cols=212 Identities=15% Similarity=0.136 Sum_probs=136.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCC-CceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGP-CVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
+|..+++.... +.|.||++||.. .... ...| ......| +.+|.|+++|+||+|.+.....
T Consensus 13 ~g~~l~y~~~G---------~g~~vvllHG~~~~~~~-~~~w----~~~~~~L-~~~~~vi~~Dl~G~G~S~~~~~---- 73 (282)
T 1iup_A 13 AGVLTNYHDVG---------EGQPVILIHGSGPGVSA-YANW----RLTIPAL-SKFYRVIAPDMVGFGFTDRPEN---- 73 (282)
T ss_dssp TTEEEEEEEEC---------CSSEEEEECCCCTTCCH-HHHH----TTTHHHH-TTTSEEEEECCTTSTTSCCCTT----
T ss_pred CCEEEEEEecC---------CCCeEEEECCCCCCccH-HHHH----HHHHHhh-ccCCEEEEECCCCCCCCCCCCC----
Confidence 67778776542 125689999943 3221 1122 2234555 6789999999999998753211
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc------------
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------------ 453 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~------------ 453 (550)
....+++..+.+..+.++- ..+++.|+||||||.+++.+|.++|++++++|+.++........
T Consensus 74 ---~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 148 (282)
T 1iup_A 74 ---YNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPS 148 (282)
T ss_dssp ---CCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSC
T ss_pred ---CCCCHHHHHHHHHHHHHHh--CCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcCCCc
Confidence 0123455555554444432 34689999999999999999999999999999988754210000
Q ss_pred -ch---hhhhcc------------------CCCCCCcccccc---C----------ChhhhhhcCCCcEEEEecCCCCCC
Q 008873 454 -TF---YTEKYM------------------GLPSEDPVGYEY---S----------SVMHHVHKMKGKLLLVHGMIDENV 498 (550)
Q Consensus 454 -~~---~~~~~~------------------g~~~~~~~~~~~---~----------~~~~~~~~i~~P~lii~G~~D~~v 498 (550)
.. +..... ..+. ....+.. . .....+.++++|+|+++|++|..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 227 (282)
T 1iup_A 149 IENMRNLLDIFAYDRSLVTDELARLRYEASIQPG-FQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVV 227 (282)
T ss_dssp HHHHHHHHHHHCSSGGGCCHHHHHHHHHHHTSTT-HHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSS
T ss_pred HHHHHHHHHHhhcCcccCCHHHHHHHHhhccChH-HHHHHHHHHhccccccccccccchhhhhhcCCCEEEEecCCCCCC
Confidence 00 000000 0000 0000000 0 011456788999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 499 HFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 499 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
|++.+.++.+.+ .+.+++++|++||.+ ..++...+.+.+.+||++
T Consensus 228 p~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 228 PLSSSLRLGELI----DRAQLHVFGRCGHWT-QIEQTDRFNRLVVEFFNE 272 (282)
T ss_dssp CHHHHHHHHHHC----TTEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhC----CCCeEEEECCCCCCc-cccCHHHHHHHHHHHHhc
Confidence 998887776654 467999999999986 345678889999999975
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=160.29 Aligned_cols=203 Identities=13% Similarity=0.144 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .| ......|++ +|.|+++|+||+|.+........ ....++++.+.+..+.+.-
T Consensus 21 ~~vvllHG~~~~~~---~w----~~~~~~L~~-~~~vi~~Dl~G~G~S~~~~~~~~----~~~~~~~~a~dl~~~l~~l- 87 (271)
T 1wom_A 21 ASIMFAPGFGCDQS---VW----NAVAPAFEE-DHRVILFDYVGSGHSDLRAYDLN----RYQTLDGYAQDVLDVCEAL- 87 (271)
T ss_dssp SEEEEECCTTCCGG---GG----TTTGGGGTT-TSEEEECCCSCCSSSCCTTCCTT----GGGSHHHHHHHHHHHHHHT-
T ss_pred CcEEEEcCCCCchh---hH----HHHHHHHHh-cCeEEEECCCCCCCCCCCccccc----ccccHHHHHHHHHHHHHHc-
Confidence 78899999765532 23 334556655 79999999999998753210000 0011333333333333321
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc--------cccc-----h----------h----hhhcc
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD--------GYDT-----F----------Y----TEKYM 461 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~-----~----------~----~~~~~ 461 (550)
+.+++.|+||||||.+++.++.++|++++++|+.++..... .+.. . + .....
T Consensus 88 -~~~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (271)
T 1wom_A 88 -DLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVL 166 (271)
T ss_dssp -TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34689999999999999999999999999999987643210 0000 0 0 00001
Q ss_pred CCCCCC--cccc----c---------------cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEE
Q 008873 462 GLPSED--PVGY----E---------------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520 (550)
Q Consensus 462 g~~~~~--~~~~----~---------------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~ 520 (550)
+.+... .+.+ . ..+....+.++++|+|+++|++|..+|+..+..+.+.+ .+.++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~----~~~~~~ 242 (271)
T 1wom_A 167 NQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHL----PYSSLK 242 (271)
T ss_dssp CCTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSCHHHHHHHHHHS----SSEEEE
T ss_pred cCCCchHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCCHHHHHHHHHHC----CCCEEE
Confidence 111100 0000 0 11222346778999999999999999988777776544 357999
Q ss_pred EcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 521 IFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 521 ~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+++++||.+ ..+....+.+.+.+||++++
T Consensus 243 ~i~~~gH~~-~~e~p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 243 QMEARGHCP-HMSHPDETIQLIGDYLKAHV 271 (271)
T ss_dssp EEEEESSCH-HHHCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCcCc-cccCHHHHHHHHHHHHHhcC
Confidence 999999987 34567888999999999875
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=171.97 Aligned_cols=225 Identities=12% Similarity=0.012 Sum_probs=148.5
Q ss_pred CCCCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcE----EEEE
Q 008873 294 QLEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL----VWKL 368 (550)
Q Consensus 294 ~~~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~----vv~~ 368 (550)
...+.+.+++.+. .|..+.+++|.|.+.. .+++|+|+++||+..... .......+.|+++|++ ||++
T Consensus 164 p~G~v~~~~~~S~~~g~~~~~~vy~P~~~~--~~~~PvlvllHG~~~~~~------~~~~~~~~~l~~~g~~~p~iVV~~ 235 (403)
T 3c8d_A 164 PEIPAKEIIWKSERLKNSRRVWIFTTGDVT--AEERPLAVLLDGEFWAQS------MPVWPVLTSLTHRQQLPPAVYVLI 235 (403)
T ss_dssp CSSCCEEEEEEETTTTEEEEEEEEEC-------CCCCEEEESSHHHHHHT------SCCHHHHHHHHHTTSSCSCEEEEE
T ss_pred CCCceEEEEEEccccCCcEEEEEEeCCCCC--CCCCCEEEEeCCHHHhhc------CcHHHHHHHHHHcCCCCCeEEEEE
Confidence 3557788888875 5678999999998642 368999999999532110 1122346778887764 9999
Q ss_pred CCCCCCCCchhhHHHHhhccCCCchHHH--HHHHHHHHHcC--CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcC
Q 008873 369 DNRGTARRGLKFEASIKHNCGRIDAEDQ--LTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA 444 (550)
Q Consensus 369 d~rG~g~~~~~~~~~~~~~~~~~~~~D~--~~~~~~l~~~~--~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~ 444 (550)
|+++..+...++. ....+.+. .+++.++.++. ..|+++++|+|+||||++++.++.++|++|+++++.+
T Consensus 236 d~~~~~~r~~~~~-------~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~s 308 (403)
T 3c8d_A 236 DAIDTTHRAHELP-------CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQS 308 (403)
T ss_dssp CCCSHHHHHHHSS-------SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEES
T ss_pred CCCCCccccccCC-------ChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEec
Confidence 9986321111110 01112232 24566666653 3588999999999999999999999999999999999
Q ss_pred CcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC
Q 008873 445 PVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524 (550)
Q Consensus 445 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~ 524 (550)
|...+.... .+. ......... .........|++|+||+.|..+ ..++.+++++|+++|.++++.+||+
T Consensus 309 g~~~~~~~~---------~~~-~~~~~~~~~-~~~~~~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~~G 376 (403)
T 3c8d_A 309 GSYWWPHRG---------GQQ-EGVLLEKLK-AGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG 376 (403)
T ss_dssp CCTTTTCTT---------SSS-CCHHHHHHH-TTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC
T ss_pred cccccCCCC---------CCc-HHHHHHHHH-hccccCCCceEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 987653321 000 000000000 0011334579999999998654 6889999999999999999999999
Q ss_pred CCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 525 ERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 525 ~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+|.+. .....+...+.||.+.
T Consensus 377 -gH~~~---~w~~~l~~~l~~l~~~ 397 (403)
T 3c8d_A 377 -GHDAL---CWRGGLMQGLIDLWQP 397 (403)
T ss_dssp -CSCHH---HHHHHHHHHHHHHHGG
T ss_pred -CCCHH---HHHHHHHHHHHHHhcc
Confidence 59752 2345566778888654
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=156.91 Aligned_cols=201 Identities=14% Similarity=0.110 Sum_probs=127.4
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
..|.||++||.+.+.. .|......|+++||.|+++|.||+|.+..... ....++++.+.+..+.++
T Consensus 9 ~g~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~ 74 (264)
T 2wfl_A 9 QQKHFVLVHGGCLGAW-------IWYKLKPLLESAGHKVTAVDLSAAGINPRRLD-------EIHTFRDYSEPLMEVMAS 74 (264)
T ss_dssp CCCEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCccccc-------hHHHHHHHHHhCCCEEEEeecCCCCCCCCCcc-------cccCHHHHHHHHHHHHHH
Confidence 3478899999765432 34556788888999999999999998753211 012244444444443333
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc--ccc---hhhhh-----c-------cCCCCC---
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YDT---FYTEK-----Y-------MGLPSE--- 466 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--~~~---~~~~~-----~-------~g~~~~--- 466 (550)
-. ..+++.|+||||||.+++.++.++|++++++|+.++...... ... .+... + .+.+..
T Consensus 75 l~-~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (264)
T 2wfl_A 75 IP-PDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGM 153 (264)
T ss_dssp SC-TTCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEESCTTSCEE
T ss_pred hC-CCCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhccCCCCCcc
Confidence 11 136899999999999999999999999999998876421100 000 00000 0 000000
Q ss_pred ----Cccc-----cc--------------cC-----------ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHH
Q 008873 467 ----DPVG-----YE--------------YS-----------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 512 (550)
Q Consensus 467 ----~~~~-----~~--------------~~-----------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 512 (550)
..+. +. .. ..+......++|+|+++|++|..+|+..+..+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~-- 231 (264)
T 2wfl_A 154 SMILGPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESV-- 231 (264)
T ss_dssp EEECCHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHH--
T ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCCHHHHHHHHHhC--
Confidence 0000 00 00 000000113579999999999999999888887765
Q ss_pred cCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 513 ARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 513 ~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
...+++++|++||.. ..+....+.+.+.+|+.
T Consensus 232 --p~~~~~~i~~~gH~~-~~e~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 232 --GADKVKEIKEADHMG-MLSQPREVCKCLLDISD 263 (264)
T ss_dssp --CCSEEEEETTCCSCH-HHHSHHHHHHHHHHHHC
T ss_pred --CCceEEEeCCCCCch-hhcCHHHHHHHHHHHhh
Confidence 356899999999987 44667788888888874
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=158.26 Aligned_cols=212 Identities=16% Similarity=0.156 Sum_probs=134.4
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCC-CceeecccccccchhHh-HHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGP-CVQLVCDSWINTVDMRA-QYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~~~-~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
..+++....+ + .|.||++||.+ +... ...| .... ..|++. |.|+++|+||+|.+.....
T Consensus 25 ~~l~y~~~g~-------g-~~~vvllHG~~~~~~~-~~~~----~~~~~~~l~~~-~~vi~~D~~G~G~S~~~~~----- 85 (289)
T 1u2e_A 25 LRIHFNDCGQ-------G-DETVVLLHGSGPGATG-WANF----SRNIDPLVEAG-YRVILLDCPGWGKSDSVVN----- 85 (289)
T ss_dssp EEEEEEEECC-------C-SSEEEEECCCSTTCCH-HHHT----TTTHHHHHHTT-CEEEEECCTTSTTSCCCCC-----
T ss_pred EEEEEeccCC-------C-CceEEEECCCCcccch-hHHH----HHhhhHHHhcC-CeEEEEcCCCCCCCCCCCc-----
Confidence 6676665421 1 13789999964 2111 1122 3334 566654 9999999999998764211
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-c---c-----c---
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-Y---D-----T--- 454 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-~---~-----~--- 454 (550)
.....++..+.+..+.++- +.+++.|+||||||.+++.++.++|++++++|+.++...... + . .
T Consensus 86 --~~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (289)
T 1u2e_A 86 --SGSRSDLNARILKSVVDQL--DIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQ 161 (289)
T ss_dssp --SSCHHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHH
T ss_pred --cccCHHHHHHHHHHHHHHh--CCCceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHH
Confidence 0123455555555554432 346899999999999999999999999999999877542100 0 0 0
Q ss_pred hh-----------hhhccCCCCC-Ccc--------------cc------------ccCChhhhhhcCCCcEEEEecCCCC
Q 008873 455 FY-----------TEKYMGLPSE-DPV--------------GY------------EYSSVMHHVHKMKGKLLLVHGMIDE 496 (550)
Q Consensus 455 ~~-----------~~~~~g~~~~-~~~--------------~~------------~~~~~~~~~~~i~~P~lii~G~~D~ 496 (550)
.+ .......+.. ..+ .+ ...+....+.++++|+|+++|++|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~ 241 (289)
T 1u2e_A 162 LYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDR 241 (289)
T ss_dssp HHHSCCHHHHHHHHHTTSSCTTSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCS
T ss_pred HHhcchHHHHHHHHHHhhcCcccCCHHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCC
Confidence 00 0000000100 000 00 0011224567789999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 497 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 497 ~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.+|+..+.++.+.+ ...+++++|++||.. ..++...+.+.+.+||++
T Consensus 242 ~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 288 (289)
T 1u2e_A 242 FVPMDAGLRLLSGI----AGSELHIFRDCGHWA-QWEHADAFNQLVLNFLAR 288 (289)
T ss_dssp SSCTHHHHHHHHHS----TTCEEEEESSCCSCH-HHHTHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHhhC----CCcEEEEeCCCCCch-hhcCHHHHHHHHHHHhcC
Confidence 99999888777654 357899999999986 335567888899999864
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-18 Score=161.32 Aligned_cols=212 Identities=13% Similarity=-0.021 Sum_probs=136.9
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
+...+|..+++..+. +.|+||++||.+++.. .|......|+++ |.|+++|+||+|.+....
T Consensus 14 ~~~~~g~~l~~~~~g---------~~~~vv~lHG~~~~~~-------~~~~~~~~L~~~-~~vi~~D~~G~G~S~~~~-- 74 (301)
T 3kda_A 14 YREVDGVKLHYVKGG---------QGPLVMLVHGFGQTWY-------EWHQLMPELAKR-FTVIAPDLPGLGQSEPPK-- 74 (301)
T ss_dssp EEEETTEEEEEEEEE---------SSSEEEEECCTTCCGG-------GGTTTHHHHTTT-SEEEEECCTTSTTCCCCS--
T ss_pred EEeeCCeEEEEEEcC---------CCCEEEEECCCCcchh-------HHHHHHHHHHhc-CeEEEEcCCCCCCCCCCC--
Confidence 334488888877664 1268899999876643 234457788887 999999999999876431
Q ss_pred HHhhccCCCchHHHHHHHHHHHHcCCCCCCc-eEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc-c-------
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY-D------- 453 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-~------- 453 (550)
.....+++.+.+..+.+.- +.++ +.|+||||||.+++.++.++|++++++|+.+|....... .
T Consensus 75 ------~~~~~~~~~~~l~~~l~~l--~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 146 (301)
T 3kda_A 75 ------TGYSGEQVAVYLHKLARQF--SPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQ 146 (301)
T ss_dssp ------SCSSHHHHHHHHHHHHHHH--CSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGSBSEETT
T ss_pred ------CCccHHHHHHHHHHHHHHc--CCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccchhhhcch
Confidence 1233455555555444431 3356 999999999999999999999999999999875321000 0
Q ss_pred --------------chhh------------hhcc----CCC-CCCcc---cccc--CCh---------------------
Q 008873 454 --------------TFYT------------EKYM----GLP-SEDPV---GYEY--SSV--------------------- 476 (550)
Q Consensus 454 --------------~~~~------------~~~~----g~~-~~~~~---~~~~--~~~--------------------- 476 (550)
.... ..++ ..+ ....+ .+.. ..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (301)
T 3kda_A 147 GESLVWHFSFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNESVRQNA 226 (301)
T ss_dssp EECSSTHHHHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhhhhhHHHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhccchhhcc
Confidence 0000 0000 000 00000 0000 000
Q ss_pred --hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 477 --MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 477 --~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
...+.++++|+|+++|++| +++.....+. +...++++++++++||.+ ..++...+.+.+.+|+++
T Consensus 227 ~~~~~l~~i~~P~l~i~G~~D--~~~~~~~~~~----~~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~~l~~ 293 (301)
T 3kda_A 227 ELAKTRLQMPTMTLAGGGAGG--MGTFQLEQMK----AYAEDVEGHVLPGCGHWL-PEECAAPMNRLVIDFLSR 293 (301)
T ss_dssp HHTTSCBCSCEEEEEECSTTS--CTTHHHHHHH----TTBSSEEEEEETTCCSCH-HHHTHHHHHHHHHHHHTT
T ss_pred cchhhccccCcceEEEecCCC--CChhHHHHHH----hhcccCeEEEcCCCCcCc-hhhCHHHHHHHHHHHHhh
Confidence 0011278899999999999 5655555543 334578999999999987 456788889999999875
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-18 Score=158.96 Aligned_cols=198 Identities=13% Similarity=0.153 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .| ......|++. |.|+++|+||+|.+..... ....++++.+.+..+.+.-
T Consensus 17 ~~vvllHG~~~~~~---~~----~~~~~~L~~~-~~vi~~Dl~G~G~S~~~~~-------~~~~~~~~~~dl~~~l~~l- 80 (269)
T 2xmz_A 17 QVLVFLHGFLSDSR---TY----HNHIEKFTDN-YHVITIDLPGHGEDQSSMD-------ETWNFDYITTLLDRILDKY- 80 (269)
T ss_dssp EEEEEECCTTCCGG---GG----TTTHHHHHTT-SEEEEECCTTSTTCCCCTT-------SCCCHHHHHHHHHHHHGGG-
T ss_pred CeEEEEcCCCCcHH---HH----HHHHHHHhhc-CeEEEecCCCCCCCCCCCC-------CccCHHHHHHHHHHHHHHc-
Confidence 45899999876543 23 3356777765 9999999999998764211 0223555555555555442
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc---------------------hhhhhccCC----
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT---------------------FYTEKYMGL---- 463 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~g~---- 463 (550)
+.+++.|+||||||.+++.++.++|++++++|+.++......... .+...+...
T Consensus 81 -~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (269)
T 2xmz_A 81 -KDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQ 159 (269)
T ss_dssp -TTSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTSGGGG
T ss_pred -CCCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHHHHhCcccc
Confidence 346899999999999999999999999999999887543211000 000000000
Q ss_pred -----CC------------CCccc----c------ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Q 008873 464 -----PS------------EDPVG----Y------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 516 (550)
Q Consensus 464 -----~~------------~~~~~----~------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 516 (550)
+. ..+.. + ...+....+.++++|+|+++|++|..+|+.... +.+. -.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~-~~~~----~~~ 234 (269)
T 2xmz_A 160 SQLELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKK-MANL----IPN 234 (269)
T ss_dssp GGGGSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHHHHHHH-HHHH----STT
T ss_pred ccccCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccCHHHHH-HHhh----CCC
Confidence 00 00000 0 001112356778899999999999988876543 4332 356
Q ss_pred eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 517 YEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.++.++++++|.+. .++...+.+.+.+||++.
T Consensus 235 ~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 235 SKCKLISATGHTIH-VEDSDEFDTMILGFLKEE 266 (269)
T ss_dssp EEEEEETTCCSCHH-HHSHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCChh-hcCHHHHHHHHHHHHHHh
Confidence 89999999999873 356778899999999764
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-17 Score=153.17 Aligned_cols=201 Identities=18% Similarity=0.099 Sum_probs=130.2
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|+++||.|+++|.||+|.+..... ....++++.+.+..+.+.-.
T Consensus 5 ~~vvllHG~~~~~~-------~w~~~~~~L~~~g~rVia~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~l~ 70 (273)
T 1xkl_A 5 KHFVLVHGACHGGW-------SWYKLKPLLEAAGHKVTALDLAASGTDLRKIE-------ELRTLYDYTLPLMELMESLS 70 (273)
T ss_dssp CEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEECCCTTSTTCCCCGG-------GCCSHHHHHHHHHHHHHTSC
T ss_pred CeEEEECCCCCCcc-------hHHHHHHHHHhCCCEEEEecCCCCCCCccCcc-------cccCHHHHHHHHHHHHHHhc
Confidence 67899999765532 34446788989999999999999998753211 11235555555555544321
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc--ccc---hhhh---------h---ccCCCCC-----
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG--YDT---FYTE---------K---YMGLPSE----- 466 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~--~~~---~~~~---------~---~~g~~~~----- 466 (550)
..+++.|+||||||++++.++.++|++++++|+.++...... ... .... . ..+.+..
T Consensus 71 -~~~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T 1xkl_A 71 -ADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSM 149 (273)
T ss_dssp -SSSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEE
T ss_pred -cCCCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCcccc
Confidence 136899999999999999999999999999998876421100 000 0000 0 0000000
Q ss_pred --Cccc-----cc--------------cCCh-----------hhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 467 --DPVG-----YE--------------YSSV-----------MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 467 --~~~~-----~~--------------~~~~-----------~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
..+. +. ...+ +......++|+|+|+|++|..+|+..+..+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~---- 225 (273)
T 1xkl_A 150 FFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNI---- 225 (273)
T ss_dssp ECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHH----
T ss_pred ccCHHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCCHHHHHHHHHhC----
Confidence 0000 00 0000 0000113579999999999999999888887765
Q ss_pred CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 515 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
...+++++|++||.. ..+....+.+.+.+|+++.
T Consensus 226 p~~~~~~i~~aGH~~-~~e~P~~~~~~i~~fl~~~ 259 (273)
T 1xkl_A 226 GVTEAIEIKGADHMA-MLCEPQKLCASLLEIAHKY 259 (273)
T ss_dssp CCSEEEEETTCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred CCCeEEEeCCCCCCc-hhcCHHHHHHHHHHHHHHh
Confidence 356899999999987 4466778899999999764
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-18 Score=162.27 Aligned_cols=215 Identities=12% Similarity=0.020 Sum_probs=139.7
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
..+|..+.+..+.+ .|+||++||.+.+.. .| ......|++ +|.|+++|+||+|.+......
T Consensus 14 ~~~g~~l~~~~~g~---------~~~vv~lHG~~~~~~---~~----~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~-- 74 (297)
T 2qvb_A 14 EIAGKRMAYIDEGK---------GDAIVFQHGNPTSSY---LW----RNIMPHLEG-LGRLVACDLIGMGASDKLSPS-- 74 (297)
T ss_dssp EETTEEEEEEEESS---------SSEEEEECCTTCCGG---GG----TTTGGGGTT-SSEEEEECCTTSTTSCCCSSC--
T ss_pred EECCEEEEEEecCC---------CCeEEEECCCCchHH---HH----HHHHHHHhh-cCeEEEEcCCCCCCCCCCCCc--
Confidence 34788887776532 278999999876543 23 334556655 499999999999987542110
Q ss_pred hhccCCCchHHHHHHHHHHHHcCCCCC-CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC---cccccch-----
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQGLAKV-GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYDTF----- 455 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~----- 455 (550)
.......++..+.+..+.+.- +. +++.++||||||.+++.++.++|++++++|+.+|... +......
T Consensus 75 --~~~~~~~~~~~~~~~~~l~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 150 (297)
T 2qvb_A 75 --GPDRYSYGEQRDFLFALWDAL--DLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVF 150 (297)
T ss_dssp --STTSSCHHHHHHHHHHHHHHT--TCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCGGGSCGGGHHHH
T ss_pred --cccCcCHHHHHHHHHHHHHHc--CCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccCCCCChHHHHHH
Confidence 011134555555555554442 34 6899999999999999999999999999999888653 1110000
Q ss_pred -----------------hhhhccC---CCCCCc---cc------------------cccC--------------Chhhhh
Q 008873 456 -----------------YTEKYMG---LPSEDP---VG------------------YEYS--------------SVMHHV 480 (550)
Q Consensus 456 -----------------~~~~~~g---~~~~~~---~~------------------~~~~--------------~~~~~~ 480 (550)
+....+. ...... .. +... +....+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (297)
T 2qvb_A 151 QGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWL 230 (297)
T ss_dssp HHHTSTTHHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhhHHHHHHHHhhc
Confidence 0000000 000000 00 0000 113345
Q ss_pred hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 481 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.++++|+|+++|++|..+|++...++.+.+ .. ++.++ +++|.+ ..++...+.+.+.+||+++
T Consensus 231 ~~i~~P~lii~G~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~-~~~~p~~~~~~i~~fl~~~ 292 (297)
T 2qvb_A 231 EETDMPKLFINAEPGAIITGRIRDYVRSWP----NQ-TEITV-PGVHFV-QEDSPEEIGAAIAQFVRRL 292 (297)
T ss_dssp HHCCSCEEEEEEEECSSSCHHHHHHHHTSS----SE-EEEEE-EESSCG-GGTCHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCCCcCCHHHHHHHHHHc----CC-eEEEe-cCccch-hhhCHHHHHHHHHHHHHHH
Confidence 678999999999999999998777776543 34 88888 999987 4466788999999999864
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=159.95 Aligned_cols=213 Identities=13% Similarity=0.066 Sum_probs=139.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|..+++....+ ++.|.||++||.+.+.. . |......|++ +|.|+++|.||+|.+...-
T Consensus 15 ~g~~l~y~~~G~-------g~~~pvvllHG~~~~~~---~----w~~~~~~L~~-~~~via~Dl~G~G~S~~~~------ 73 (316)
T 3afi_E 15 LGSSMAYRETGA-------QDAPVVLFLHGNPTSSH---I----WRNILPLVSP-VAHCIAPDLIGFGQSGKPD------ 73 (316)
T ss_dssp TTEEEEEEEESC-------TTSCEEEEECCTTCCGG---G----GTTTHHHHTT-TSEEEEECCTTSTTSCCCS------
T ss_pred CCEEEEEEEeCC-------CCCCeEEEECCCCCchH---H----HHHHHHHHhh-CCEEEEECCCCCCCCCCCC------
Confidence 677787776542 22258899999877643 2 3334666765 4999999999999886321
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC---ccccc----------
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYD---------- 453 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~---~~~~~---------- 453 (550)
....++++.+.+..+++.- +.+++.|+||||||.+++.+|.++|++++++|+.++... +....
T Consensus 74 --~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (316)
T 3afi_E 74 --IAYRFFDHVRYLDAFIEQR--GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDH 149 (316)
T ss_dssp --SCCCHHHHHHHHHHHHHHT--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCCCCGGGHHH
T ss_pred --CCCCHHHHHHHHHHHHHHc--CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccchhhcccccc
Confidence 1233555655555555442 346899999999999999999999999999998875321 11100
Q ss_pred -----c-------------------hhhhhccC--C-CCCCc---ccc-----------------ccCC-----------
Q 008873 454 -----T-------------------FYTEKYMG--L-PSEDP---VGY-----------------EYSS----------- 475 (550)
Q Consensus 454 -----~-------------------~~~~~~~g--~-~~~~~---~~~-----------------~~~~----------- 475 (550)
. .+....+. . ..... +.| ....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (316)
T 3afi_E 150 AEAARAVFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAGEPADVYEA 229 (316)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTTBSHHHHHH
T ss_pred chhHHHHHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccccchhhhhH
Confidence 0 00000000 0 00000 000 0000
Q ss_pred ---hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 476 ---VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 476 ---~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
....+.++++|+|+++|++|..+|+..+..+.+.+ ...++.++|++||.+ ..+....+.+.+.+||++.
T Consensus 230 ~~~~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~GH~~-~~e~p~~~~~~i~~fl~~~ 301 (316)
T 3afi_E 230 LQSAHAALAASSYPKLLFTGEPGALVSPEFAERFAASL----TRCALIRLGAGLHYL-QEDHADAIGRSVAGWIAGI 301 (316)
T ss_dssp HHHHHHHHHHCCSCEEEEEEEECSSSCHHHHHHHHHHS----SSEEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCeEEEecCCCCccCHHHHHHHHHhC----CCCeEEEcCCCCCCc-hhhCHHHHHHHHHHHHhhc
Confidence 01123468999999999999999988777776554 467999999999987 4467788899999999753
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-18 Score=170.74 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=145.0
Q ss_pred EEcCCCc-----EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhH---HHHhCCcEEEEECCCC--
Q 008873 303 IQANDGT-----VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ---YLRSKGILVWKLDNRG-- 372 (550)
Q Consensus 303 ~~~~~g~-----~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~---~l~~~G~~vv~~d~rG-- 372 (550)
+...+|. .+++..+.+.+. .+.|+||++||.+++....+.|. .... .|.+.||.|+++|+||
T Consensus 83 ~~~~~g~~~~g~~l~y~~~G~~~~----~~~p~vvllHG~~~~~~~~~~w~----~~~~~~~~L~~~~~~Vi~~D~~G~~ 154 (444)
T 2vat_A 83 FTLESGVILRDVPVAYKSWGRMNV----SRDNCVIVCHTLTSSAHVTSWWP----TLFGQGRAFDTSRYFIICLNYLGSP 154 (444)
T ss_dssp EECTTSCEEEEEEEEEEEESCCCT----TSCCEEEEECCTTCCSCGGGTCG----GGBSTTSSBCTTTCEEEEECCTTCS
T ss_pred eecCCCCEecceeEEEEEecCCCC----CCCCeEEEECCCCcccchhhHHH----HhcCccchhhccCCEEEEecCCCCC
Confidence 4445554 455555544321 23478999999877654211132 2222 4667899999999999
Q ss_pred CCCCchhhHHH-------HhhccCCCchHHHHHHHHHHHHcCCCCCCc-eEEEEechhHHHHHHHHhhCCCeeEEEEEcC
Q 008873 373 TARRGLKFEAS-------IKHNCGRIDAEDQLTGAEWLIKQGLAKVGH-IGLYGWSYGGYLSAITLARFPDVFQCAVSGA 444 (550)
Q Consensus 373 ~g~~~~~~~~~-------~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~ 444 (550)
.|.++...... ...++....++|+.+.+..+.+.- ..++ +.|+||||||.+++.++.++|++++++|+.+
T Consensus 155 ~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~l--~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~ 232 (444)
T 2vat_A 155 FGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRL--GVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIA 232 (444)
T ss_dssp SSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHH--TCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEES
T ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHHHhc--CCccceEEEEECHHHHHHHHHHHhChHhhheEEEEe
Confidence 46554210000 001112245666666666655542 3457 9999999999999999999999999999988
Q ss_pred CcCCccccc----------------------------------------------chhhhhccCCCCC------------
Q 008873 445 PVTSWDGYD----------------------------------------------TFYTEKYMGLPSE------------ 466 (550)
Q Consensus 445 ~~~~~~~~~----------------------------------------------~~~~~~~~g~~~~------------ 466 (550)
+........ ..+...+...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (444)
T 2vat_A 233 TSCRQSGWCAAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAK 312 (444)
T ss_dssp CCSBCCHHHHHHHHHHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC-----------
T ss_pred ccccCCccchhHHHHHHHHHhcCCccccccccccCCcccchhHHHhhhhccccChHHHHHHhccCccccccccccccccc
Confidence 765421000 0000111111100
Q ss_pred -------------------Ccccc---------cc---------------C--------ChhhhhhcCCCcEEEEecCCC
Q 008873 467 -------------------DPVGY---------EY---------------S--------SVMHHVHKMKGKLLLVHGMID 495 (550)
Q Consensus 467 -------------------~~~~~---------~~---------------~--------~~~~~~~~i~~P~lii~G~~D 495 (550)
..+.| .. . +....+.++++|+|+++|++|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~i~~PvLvi~G~~D 392 (444)
T 2vat_A 313 KEINGTDSGNSHRAGQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSD 392 (444)
T ss_dssp ----------------CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTC
T ss_pred cccccccccccccccCchhhHHHHHHHHHHHHhhccCccHHHHHHHHhhhhhccccccccHHHHhhcCCCCEEEEEeCCC
Confidence 00000 00 0 134456788999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCeEEEEcC-CCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 496 ENVHFRHTARLINALVAARKPYEILIFP-DERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 496 ~~v~~~~~~~~~~~l~~~~~~~~~~~~p-~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
..+|++.+.++.+.+ .+.++++++ ++||.+. .+....+.+.+.+||+++|
T Consensus 393 ~~~p~~~~~~l~~~~----p~~~~~~i~~~~GH~~~-~e~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 393 GLYSFDEHVEMGRSI----PNSRLCVVDTNEGHDFF-VMEADKVNDAVRGFLDQSL 443 (444)
T ss_dssp SSSCHHHHHHHHHHS----TTEEEEECCCSCGGGHH-HHTHHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHC----CCcEEEEeCCCCCcchH-HhCHHHHHHHHHHHHHHhc
Confidence 999999888887765 467999999 8999873 3557888999999998764
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=155.24 Aligned_cols=227 Identities=12% Similarity=0.064 Sum_probs=141.0
Q ss_pred CCCCCCeEEEEEcCC-CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECC
Q 008873 293 LQLEPPDIVQIQAND-GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDN 370 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~-g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~ 370 (550)
..+...+.+++.+.. +..+.+++|.|++... .+++|||+++||+..... ......+.+++ .+.+||.+++
T Consensus 8 ~~~~~~~~~~~~S~~~~~~~~~~vylP~~y~~-~~~yPvly~l~G~~~~~~-------~~~~~~~~l~~~~~~ivV~v~~ 79 (278)
T 2gzs_A 8 SVFYHFSATSFDSVDGTRHYRVWTAVPNTTAP-ASGYPILYMLDGNAVMDR-------LDDELLKQLSEKTPPVIVAVGY 79 (278)
T ss_dssp CSSEEEEEEEEECTTSSCEEEEEEEEESSCCC-TTCEEEEEESSHHHHHHH-------CCHHHHHHHTTSCCCEEEEEEE
T ss_pred CCCCceEEEEEEcCCCCceEEEEEECCCCCCC-CCCCCEEEEeeChhHHHH-------HHHHHHHHhccCCCeEEEEEcC
Confidence 456677888998876 6889999999988643 368999877777532211 11112344554 6888898988
Q ss_pred CCCCC-----CchhhHHHHhhc---------cC-CCchHHHHHH-----HHHHHHcCCCCCCceEEEEechhHHHHHHHH
Q 008873 371 RGTAR-----RGLKFEASIKHN---------CG-RIDAEDQLTG-----AEWLIKQGLAKVGHIGLYGWSYGGYLSAITL 430 (550)
Q Consensus 371 rG~g~-----~~~~~~~~~~~~---------~~-~~~~~D~~~~-----~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~ 430 (550)
++... ++.++....... .. .....++... +.++.++..+|++|++|+|+||||+++++++
T Consensus 80 ~~~~~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~ 159 (278)
T 2gzs_A 80 QTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSW 159 (278)
T ss_dssp SSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHH
T ss_pred CCCCcCcccccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHH
Confidence 75321 111111110000 00 0112222222 2233344557888999999999999999999
Q ss_pred hhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCC--------ChHH
Q 008873 431 ARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENV--------HFRH 502 (550)
Q Consensus 431 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v--------~~~~ 502 (550)
.+ |++|+++++.+|...|.... .. . .. +.+.. . ..-..|+++.+|+.|..+ +..+
T Consensus 160 ~~-p~~f~~~~~~s~~~~~~~~~-~~-~-~~-------~~~~~-----~-~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~ 222 (278)
T 2gzs_A 160 LS-SSYFRSYYSASPSLGRGYDA-LL-S-RV-------TAVEP-----L-QFCTKHLAIMEGSATQGDNRETHAVGVLSK 222 (278)
T ss_dssp HH-CSSCSEEEEESGGGSTTHHH-HH-H-HH-------HTSCT-----T-TTTTCEEEEEECCC-----------CHHHH
T ss_pred hC-ccccCeEEEeCcchhcCcch-HH-H-HH-------HHhhc-----c-CCCCCcEEEEecCccccccccchhhhhHHH
Confidence 99 99999999999875443110 00 0 00 00000 0 012358999999999864 4789
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 503 TARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 503 ~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+.+++++|++.|+++++.++|+++|..... ..+ ...++||.+
T Consensus 223 ~~~~~~~L~~~g~~~~~~~~~g~~H~~~~~---~~~-~~~l~fl~~ 264 (278)
T 2gzs_A 223 IHTTLTILKDKGVNAVFWDFPNLGHGPMFN---ASF-RQALLDISG 264 (278)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCCHHHHHH---HHH-HHHHHHHTT
T ss_pred HHHHHHHHHcCCCeeEEEEcCCCCccchhH---HHH-HHHHHHHhh
Confidence 999999999999999999999999985332 222 345667754
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=155.16 Aligned_cols=213 Identities=10% Similarity=-0.003 Sum_probs=132.1
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.+|..+++.... ..|.||++||.+.+.. .|......|+++ |.|+++|.||+|.|... ..
T Consensus 16 ~~g~~l~y~~~G---------~g~~lvllHG~~~~~~-------~w~~~~~~L~~~-~~via~Dl~G~G~S~~~-~~--- 74 (294)
T 1ehy_A 16 LPDVKIHYVREG---------AGPTLLLLHGWPGFWW-------EWSKVIGPLAEH-YDVIVPDLRGFGDSEKP-DL--- 74 (294)
T ss_dssp CSSCEEEEEEEE---------CSSEEEEECCSSCCGG-------GGHHHHHHHHTT-SEEEEECCTTSTTSCCC-CT---
T ss_pred ECCEEEEEEEcC---------CCCEEEEECCCCcchh-------hHHHHHHHHhhc-CEEEecCCCCCCCCCCC-cc---
Confidence 478888776543 1257889999876542 344456777766 99999999999988642 10
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC-cc--c-----------
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS-WD--G----------- 451 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~-~~--~----------- 451 (550)
.+.....++++.+.+..+.++- ..+++.|+||||||.+++.++.++|++++++|+.++... .. .
T Consensus 75 ~~~~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 152 (294)
T 1ehy_A 75 NDLSKYSLDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWY 152 (294)
T ss_dssp TCGGGGCHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHH
T ss_pred ccccCcCHHHHHHHHHHHHHHc--CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchhhccchhccCceE
Confidence 0000122455555555444432 346899999999999999999999999999999885321 10 0
Q ss_pred --cc-chh---------------hhhc----cCCCCC-Cc---ccccc----CC---------------hh-----hhhh
Q 008873 452 --YD-TFY---------------TEKY----MGLPSE-DP---VGYEY----SS---------------VM-----HHVH 481 (550)
Q Consensus 452 --~~-~~~---------------~~~~----~g~~~~-~~---~~~~~----~~---------------~~-----~~~~ 481 (550)
+. ... ...+ ...+.. .. +.+.. .. .. ..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (294)
T 1ehy_A 153 SQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHT 232 (294)
T ss_dssp HHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGS
T ss_pred EEecCcchhHHHhccchhHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHhhhhhhcCCcccC
Confidence 00 000 0000 000000 00 00100 00 00 0123
Q ss_pred cCCCcEEEEecCCCCCCCh-HHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 482 KMKGKLLLVHGMIDENVHF-RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 482 ~i~~P~lii~G~~D~~v~~-~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
++++|+|+++|++|..+|+ .....+.+. ....+++++|++||.+ ..++...+.+.+.+||
T Consensus 233 ~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~----~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl 293 (294)
T 1ehy_A 233 MSDLPVTMIWGLGDTCVPYAPLIEFVPKY----YSNYTMETIEDCGHFL-MVEKPEIAIDRIKTAF 293 (294)
T ss_dssp CBCSCEEEEEECCSSCCTTHHHHHHHHHH----BSSEEEEEETTCCSCH-HHHCHHHHHHHHHHHC
T ss_pred cCCCCEEEEEeCCCCCcchHHHHHHHHHH----cCCCceEEeCCCCCCh-hhhCHHHHHHHHHHHh
Confidence 7889999999999999884 444444332 3568999999999986 4456777888888886
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-17 Score=150.90 Aligned_cols=201 Identities=14% Similarity=-0.002 Sum_probs=128.7
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|+++||.|+++|+||+|.+..... ....++++.+.+..+.+.-.
T Consensus 4 ~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~via~Dl~G~G~S~~~~~-------~~~~~~~~a~dl~~~l~~l~ 69 (257)
T 3c6x_A 4 AHFVLIHTICHGAW-------IWHKLKPLLEALGHKVTALDLAASGVDPRQIE-------EIGSFDEYSEPLLTFLEALP 69 (257)
T ss_dssp CEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHTHHHHHHHHTSC
T ss_pred CcEEEEcCCccCcC-------CHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcc-------cccCHHHHHHHHHHHHHhcc
Confidence 57888999765432 34556788999999999999999998753211 11234555544444444311
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc-c-cccc---hhhh---hccC------------------
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW-D-GYDT---FYTE---KYMG------------------ 462 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~-~-~~~~---~~~~---~~~g------------------ 462 (550)
..+++.|+||||||.+++.++.++|++++++|..++.... . .... .... .+..
T Consensus 70 -~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (257)
T 3c6x_A 70 -PGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKL 148 (257)
T ss_dssp -TTCCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEEC
T ss_pred -ccCCeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccc
Confidence 1358999999999999999999999999999987653210 0 0000 0000 0000
Q ss_pred ---------CCCCCcc---c---c-ccCC----------hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Q 008873 463 ---------LPSEDPV---G---Y-EYSS----------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKP 516 (550)
Q Consensus 463 ---------~~~~~~~---~---~-~~~~----------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 516 (550)
......+ . . .... ........++|+|+++|++|..+|+..+.++.+.+ .+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~----~~ 224 (257)
T 3c6x_A 149 GFTLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENY----KP 224 (257)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHS----CC
T ss_pred cHHHHHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccCHHHHHHHHHHC----CC
Confidence 0000000 0 0 0000 00000012579999999999999999888777654 35
Q ss_pred eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 517 YEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 517 ~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+++++|+++|.. ..+....+.+.+.+|++++
T Consensus 225 ~~~~~i~~~gH~~-~~e~P~~~~~~l~~f~~~~ 256 (257)
T 3c6x_A 225 DKVYKVEGGDHKL-QLTKTKEIAEILQEVADTY 256 (257)
T ss_dssp SEEEECCSCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred CeEEEeCCCCCCc-ccCCHHHHHHHHHHHHHhc
Confidence 7999999999987 4567788899999998763
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=154.30 Aligned_cols=210 Identities=15% Similarity=0.071 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc-------h-hhH---HHH-hhcc----C
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG-------L-KFE---ASI-KHNC----G 389 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~-------~-~~~---~~~-~~~~----~ 389 (550)
++.|.||++||..++.. .|......+.+.|.+.||.|+++|.++..... . .+. ... ...| .
T Consensus 3 ~~~~~vl~lHG~g~~~~---~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~~~ 79 (243)
T 1ycd_A 3 VQIPKLLFLHGFLQNGK---VFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYHSE 79 (243)
T ss_dssp CCCCEEEEECCTTCCHH---HHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCCCS
T ss_pred CcCceEEEeCCCCccHH---HHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccCCC
Confidence 35689999999766543 22222223567777889999999999432110 0 000 000 0001 1
Q ss_pred CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC------CeeEEEEEcCCcCCcccccchhhhhccCC
Q 008873 390 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP------DVFQCAVSGAPVTSWDGYDTFYTEKYMGL 463 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~g~ 463 (550)
.....|+.++++++.+....+..+++|+||||||.+++.++.+++ ..+++++..++........ .+.+.
T Consensus 80 ~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~-----~~~~~ 154 (243)
T 1ycd_A 80 ISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP-----EHPGE 154 (243)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT-----TSTTC
T ss_pred CcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc-----ccccc
Confidence 112456777777776542234568999999999999999988642 2456777766654321100 00000
Q ss_pred CCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC---CCeEEEEcCCCCCcCCCCCcHHHHHH
Q 008873 464 PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR---KPYEILIFPDERHMPRRHRDRIYMEE 540 (550)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~---~~~~~~~~p~~~H~~~~~~~~~~~~~ 540 (550)
... ...+. .......++++|+|++||++|..+|+.++.++++.+...+ .....+++++++|.+... ..+.+
T Consensus 155 ~~~-~~~~~--~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gH~~~~~---~~~~~ 228 (243)
T 1ycd_A 155 LRI-TEKFR--DSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNK---KDIIR 228 (243)
T ss_dssp EEE-CGGGT--TTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEEESSSSSCCCC---HHHHH
T ss_pred ccc-chhHH--HhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEecCCCCcCCch---HHHHH
Confidence 000 00010 1112345678999999999999999999999999887652 122445667789987432 35889
Q ss_pred HHHHHHHHh
Q 008873 541 RIWEFIERT 549 (550)
Q Consensus 541 ~~~~fl~~~ 549 (550)
.+.+||+++
T Consensus 229 ~i~~fl~~~ 237 (243)
T 1ycd_A 229 PIVEQITSS 237 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=155.04 Aligned_cols=211 Identities=13% Similarity=0.099 Sum_probs=133.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|..+++....++ ..|+||++||.+.+.. .|....+.|++ +|.|+++|+||+|.+...
T Consensus 7 ~g~~l~~~~~g~~-------~~~~vv~lHG~~~~~~-------~~~~~~~~L~~-~~~v~~~D~~G~G~S~~~------- 64 (264)
T 3ibt_A 7 NGTLMTYSESGDP-------HAPTLFLLSGWCQDHR-------LFKNLAPLLAR-DFHVICPDWRGHDAKQTD------- 64 (264)
T ss_dssp TTEECCEEEESCS-------SSCEEEEECCTTCCGG-------GGTTHHHHHTT-TSEEEEECCTTCSTTCCC-------
T ss_pred CCeEEEEEEeCCC-------CCCeEEEEcCCCCcHh-------HHHHHHHHHHh-cCcEEEEccccCCCCCCC-------
Confidence 6777777666442 2378999999876643 23445677754 599999999999987643
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCccc--------------
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG-------------- 451 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~~~-------------- 451 (550)
......+++.+.+..+.++- +.+++.|+|||+||.+++.++.++ |++++++|+.+|......
T Consensus 65 -~~~~~~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 141 (264)
T 3ibt_A 65 -SGDFDSQTLAQDLLAFIDAK--GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQLAEGQHPTE 141 (264)
T ss_dssp -CSCCCHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSSCCHHHHHHHHHTTCTTT
T ss_pred -ccccCHHHHHHHHHHHHHhc--CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCCcChhhcchhhcccChhh
Confidence 11223555555555554432 345899999999999999999999 999999999987651100
Q ss_pred cc---chhhhhccCCCC--------------CCccccc------------cCChhhhhhcCCCcEEEEecCCCCCC--Ch
Q 008873 452 YD---TFYTEKYMGLPS--------------EDPVGYE------------YSSVMHHVHKMKGKLLLVHGMIDENV--HF 500 (550)
Q Consensus 452 ~~---~~~~~~~~g~~~--------------~~~~~~~------------~~~~~~~~~~i~~P~lii~G~~D~~v--~~ 500 (550)
.. ......++.... .....+. ..++...+.++++|+|++||..|... ++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~~~~~~~~~ 221 (264)
T 3ibt_A 142 YVAGRQSFFDEWAETTDNADVLNHLRNEMPWFHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIYSQPLSQDYR 221 (264)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEECCSCCHHHH
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHhhhhccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEecCCccchhhH
Confidence 00 000001111000 0000010 01122566788999999987554433 33
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 501 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 501 ~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.....+ .+.....++.++++++|.+ ..++...+.+.+.+||+
T Consensus 222 ~~~~~~----~~~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 222 QLQLEF----AAGHSWFHPRHIPGRTHFP-SLENPVAVAQAIREFLQ 263 (264)
T ss_dssp HHHHHH----HHHCTTEEEEECCCSSSCH-HHHCHHHHHHHHHHHTC
T ss_pred HHHHHH----HHhCCCceEEEcCCCCCcc-hhhCHHHHHHHHHHHHh
Confidence 333333 3334578999999999976 34567788888988875
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-17 Score=142.50 Aligned_cols=168 Identities=11% Similarity=0.029 Sum_probs=119.6
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCc---EEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI---LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~---~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
.|+||++||.++... .|..+.+.|+++|| .|+++|+||.|.+... ..+++.+.+..+.
T Consensus 3 ~~~vv~~HG~~~~~~-------~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~~------------~~~~~~~~~~~~~ 63 (181)
T 1isp_A 3 HNPVVMVHGIGGASF-------NFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYN------------NGPVLSRFVQKVL 63 (181)
T ss_dssp CCCEEEECCTTCCGG-------GGHHHHHHHHHTTCCGGGEEECCCSCTTCCHHH------------HHHHHHHHHHHHH
T ss_pred CCeEEEECCcCCCHh-------HHHHHHHHHHHcCCCCccEEEEecCCCCCchhh------------hHHHHHHHHHHHH
Confidence 377899999765532 34456788999998 6999999998876431 1334444444444
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhc
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHK 482 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 482 (550)
++- +.+++.++||||||.+++.++.++ |++++++|+.+|........ ..+. .. ..
T Consensus 64 ~~~--~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~--------~~~~--------~~-----~~ 120 (181)
T 1isp_A 64 DET--GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK--------ALPG--------TD-----PN 120 (181)
T ss_dssp HHH--CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB--------CCCC--------SC-----TT
T ss_pred HHc--CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCcccccccc--------cCCC--------CC-----Cc
Confidence 332 446899999999999999999987 88999999998875432110 0000 00 12
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 483 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 483 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.++|+|+++|++|..+|++.+ .....+++++++++|.+.... ..+.+.+.+||.+
T Consensus 121 ~~~p~l~i~G~~D~~v~~~~~---------~~~~~~~~~~~~~gH~~~~~~--~~~~~~i~~fl~~ 175 (181)
T 1isp_A 121 QKILYTSIYSSADMIVMNYLS---------RLDGARNVQIHGVGHIGLLYS--SQVNSLIKEGLNG 175 (181)
T ss_dssp CCCEEEEEEETTCSSSCHHHH---------CCBTSEEEEESSCCTGGGGGC--HHHHHHHHHHHTT
T ss_pred cCCcEEEEecCCCcccccccc---------cCCCCcceeeccCchHhhccC--HHHHHHHHHHHhc
Confidence 357999999999999998843 134578999999999874433 3688999999975
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.4e-17 Score=154.16 Aligned_cols=197 Identities=16% Similarity=0.104 Sum_probs=131.0
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhC--CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~--G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
..|.||++||.+++.. .|....+.|+++ ||.|+++|+||+|.+..... ..++|+.+.+..+.
T Consensus 35 ~~~~vvllHG~~~~~~-------~~~~~~~~L~~~~~g~~vi~~D~~G~G~s~~~~~---------~~~~~~~~~l~~~~ 98 (302)
T 1pja_A 35 SYKPVIVVHGLFDSSY-------SFRHLLEYINETHPGTVVTVLDLFDGRESLRPLW---------EQVQGFREAVVPIM 98 (302)
T ss_dssp CCCCEEEECCTTCCGG-------GGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCHH---------HHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCChh-------HHHHHHHHHHhcCCCcEEEEeccCCCccchhhHH---------HHHHHHHHHHHHHh
Confidence 4577889999766532 345567888888 99999999999987654322 12566666666666
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCCcCCccccc-chh-------------------------h
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPVTSWDGYD-TFY-------------------------T 457 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~-~~~-------------------------~ 457 (550)
+.. .+++.++||||||.+++.++.++|+ +++++|+.++........ ... .
T Consensus 99 ~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (302)
T 1pja_A 99 AKA---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSI 175 (302)
T ss_dssp HHC---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGGGSTG
T ss_pred hcC---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHHHhhh
Confidence 543 3689999999999999999999999 799999988754321110 000 0
Q ss_pred hhccCCCCCCccccc----------cC----C---hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHH------------
Q 008873 458 EKYMGLPSEDPVGYE----------YS----S---VMHHVHKMKGKLLLVHGMIDENVHFRHTARLIN------------ 508 (550)
Q Consensus 458 ~~~~g~~~~~~~~~~----------~~----~---~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~------------ 508 (550)
..+...+.. .+.+. .. . ....+.+++ |+|+++|++|..+|+..+..+.+
T Consensus 176 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~~ 253 (302)
T 1pja_A 176 CNYWHDPHH-DDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEE 253 (302)
T ss_dssp GGGBCCTTC-HHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSSSGGGGGTCEECTTCCEECGGG
T ss_pred hhcccChhh-hhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccchhHhhHhhhcCCcccccchhh
Confidence 000011110 00000 00 0 133567788 99999999999999887766632
Q ss_pred ------------HHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 509 ------------ALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 509 ------------~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
.+... .++++.++|+++|.. ..++...+.+.+.+||
T Consensus 254 ~~~~~~~~~~~~~l~~~-~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl 301 (302)
T 1pja_A 254 QLVYLRDSFGLKTLLAR-GAIVRCPMAGISHTA-WHSNRTLYETCIEPWL 301 (302)
T ss_dssp SHHHHTTTTSHHHHHHT-TCEEEEECSSCCTTT-TTSCHHHHHHHTGGGC
T ss_pred hhhhhhhhhchhhHhhc-CCeEEEEecCccccc-cccCHHHHHHHHHHhc
Confidence 12222 248999999999987 4456677777777775
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=158.38 Aligned_cols=217 Identities=11% Similarity=0.001 Sum_probs=141.0
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
+...+|..+.+..+.+ .|+||++||.+++.. .| ......|++. |.|+++|+||+|.+.....
T Consensus 13 ~~~~~g~~l~~~~~g~---------~~~vv~lHG~~~~~~---~~----~~~~~~L~~~-~~vi~~D~~G~G~S~~~~~- 74 (302)
T 1mj5_A 13 FIEIKGRRMAYIDEGT---------GDPILFQHGNPTSSY---LW----RNIMPHCAGL-GRLIACDLIGMGDSDKLDP- 74 (302)
T ss_dssp EEEETTEEEEEEEESC---------SSEEEEECCTTCCGG---GG----TTTGGGGTTS-SEEEEECCTTSTTSCCCSS-
T ss_pred EEEECCEEEEEEEcCC---------CCEEEEECCCCCchh---hh----HHHHHHhccC-CeEEEEcCCCCCCCCCCCC-
Confidence 3344788887776532 278999999876543 23 3345566655 8999999999998754211
Q ss_pred HHhhccCCCchHHHHHHHHHHHHcCCCCC-CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC---cccccc----
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQGLAKV-GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---WDGYDT---- 454 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~---~~~~~~---- 454 (550)
.........++.+.+..+.+.- +. +++.|+|||+||.+++.++.++|++++++|+.+|... +.....
T Consensus 75 ---~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 149 (302)
T 1mj5_A 75 ---SGPERYAYAEHRDYLDALWEAL--DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRD 149 (302)
T ss_dssp ---CSTTSSCHHHHHHHHHHHHHHT--TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHH
T ss_pred ---CCcccccHHHHHHHHHHHHHHh--CCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHH
Confidence 0111134566666665555542 34 6899999999999999999999999999999887653 111000
Q ss_pred ------------------hhhhhccC----CCC----------------CCc----cccccC--------------Chhh
Q 008873 455 ------------------FYTEKYMG----LPS----------------EDP----VGYEYS--------------SVMH 478 (550)
Q Consensus 455 ------------------~~~~~~~g----~~~----------------~~~----~~~~~~--------------~~~~ 478 (550)
.+....+. ... ... ..+... ....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T 1mj5_A 150 LFQAFRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAG 229 (302)
T ss_dssp HHHHHHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccchhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHh
Confidence 00000000 000 000 000010 1133
Q ss_pred hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 479 ~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+.++++|+|+++|++|..+|+..+.++.+.+ .. ++.++ +++|.+ ..++...+.+.+.+||.+.
T Consensus 230 ~l~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~-~~e~p~~~~~~i~~fl~~~ 293 (302)
T 1mj5_A 230 WLSESPIPKLFINAEPGALTTGRMRDFCRTWP----NQ-TEITV-AGAHFI-QEDSPDEIGAAIAAFVRRL 293 (302)
T ss_dssp HHTTCCSCEEEEEEEECSSSSHHHHHHHTTCS----SE-EEEEE-EESSCG-GGTCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCeEEEEeCCCCCCChHHHHHHHHhc----CC-ceEEe-cCcCcc-cccCHHHHHHHHHHHHHhh
Confidence 45678999999999999999998777665543 34 88889 999987 4466888999999999864
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=157.44 Aligned_cols=221 Identities=11% Similarity=0.045 Sum_probs=134.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchh-HhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~-~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
+|..+++..+.+.. ...|+||++||.+.+.. ..|...|.. ..+.|++ +|.|+++|+||+|.+......
T Consensus 19 ~~~~l~y~~~G~~~-----~~~p~vvllHG~~~~~~--~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~s~~~~~~--- 87 (286)
T 2qmq_A 19 PYGSVTFTVYGTPK-----PKRPAIFTYHDVGLNYK--SCFQPLFRFGDMQEIIQ-NFVRVHVDAPGMEEGAPVFPL--- 87 (286)
T ss_dssp TTEEEEEEEESCCC-----TTCCEEEEECCTTCCHH--HHHHHHHTSHHHHHHHT-TSCEEEEECTTTSTTCCCCCT---
T ss_pred CCeEEEEEeccCCC-----CCCCeEEEeCCCCCCch--hhhhhhhhhchhHHHhc-CCCEEEecCCCCCCCCCCCCC---
Confidence 67788888775432 13488999999776542 012211221 3566665 699999999999755321110
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch----------
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF---------- 455 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------- 455 (550)
........++.+.+..+++.- +.+++.|+|||+||.+++.++.++|++++++|+.+|..........
T Consensus 88 -~~~~~~~~~~~~~l~~~l~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
T 2qmq_A 88 -GYQYPSLDQLADMIPCILQYL--NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTS 164 (286)
T ss_dssp -TCCCCCHHHHHHTHHHHHHHH--TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHHHHHHHHHHHTTS
T ss_pred -CCCccCHHHHHHHHHHHHHHh--CCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchhhhhhhhhccccc
Confidence 000013444444444433331 3358999999999999999999999999999999886532111000
Q ss_pred -----hhhhccC------CCC------------CCc---ccc-------ccCC-hhhhhhcCCCcEEEEecCCCCCCChH
Q 008873 456 -----YTEKYMG------LPS------------EDP---VGY-------EYSS-VMHHVHKMKGKLLLVHGMIDENVHFR 501 (550)
Q Consensus 456 -----~~~~~~g------~~~------------~~~---~~~-------~~~~-~~~~~~~i~~P~lii~G~~D~~v~~~ 501 (550)
.....+. .+. ... ..+ .... ....+.++++|+|+++|++|..+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-~ 243 (286)
T 2qmq_A 165 SIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED-A 243 (286)
T ss_dssp CHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEEEEETTSTTHH-H
T ss_pred cchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEEEecCCCcccc-H
Confidence 0000000 000 000 000 0000 013456788999999999999887 2
Q ss_pred HHHHHHHHHHHcCC-CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 502 HTARLINALVAARK-PYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 502 ~~~~~~~~l~~~~~-~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
. .+.+.+... ++++.++++++|.+. .++...+.+.+.+||+
T Consensus 244 -~---~~~~~~~~~~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 244 -V---VECNSKLDPTQTSFLKMADSGGQPQ-LTQPGKLTEAFKYFLQ 285 (286)
T ss_dssp -H---HHHHHHSCGGGEEEEEETTCTTCHH-HHCHHHHHHHHHHHHC
T ss_pred -H---HHHHHHhcCCCceEEEeCCCCCccc-ccChHHHHHHHHHHhc
Confidence 2 333344444 689999999999873 3557788899999985
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=156.78 Aligned_cols=238 Identities=16% Similarity=0.149 Sum_probs=148.1
Q ss_pred CCeEEEEEcCC--Cc--EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeec-ccc----cc--------cch-hHhHHH
Q 008873 297 PPDIVQIQAND--GT--VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC-DSW----IN--------TVD-MRAQYL 358 (550)
Q Consensus 297 ~~~~~~~~~~~--g~--~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~----~~--------~~~-~~~~~l 358 (550)
...++.+++.| |. ...+.++.|.+.. .+.|+|.|.||..+...-+ .++ .. .++ .+...+
T Consensus 74 ~a~ri~Y~std~~G~p~~~~gtv~~P~~~~---~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~~ 150 (462)
T 3guu_A 74 ASFQLQYRTTNTQNEAVADVATVWIPAKPA---SPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIGW 150 (462)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECSSCC---SSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHHH
T ss_pred eEEEEEEEEECCCCCEEEEEEEEEecCCCC---CCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHHH
Confidence 45677777654 43 4788899998753 3579999999954321100 000 00 111 234556
Q ss_pred -HhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCC-CCCceEEEEechhHHHHHHHHhhC---
Q 008873 359 -RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA-KVGHIGLYGWSYGGYLSAITLARF--- 433 (550)
Q Consensus 359 -~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~-d~~~i~i~G~S~GG~~a~~~~~~~--- 433 (550)
.++||+|+++||+|.|.. |...... ...+.|.++++..+. .+ ...+++++|||+||..+++++...
T Consensus 151 ~l~~G~~Vv~~Dy~G~G~~---y~~~~~~---~~~vlD~vrAa~~~~---~~~~~~~v~l~G~S~GG~aal~aa~~~~~y 221 (462)
T 3guu_A 151 ALQQGYYVVSSDHEGFKAA---FIAGYEE---GMAILDGIRALKNYQ---NLPSDSKVALEGYSGGAHATVWATSLAESY 221 (462)
T ss_dssp HHHTTCEEEEECTTTTTTC---TTCHHHH---HHHHHHHHHHHHHHT---TCCTTCEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred HHhCCCEEEEecCCCCCCc---ccCCcch---hHHHHHHHHHHHHhc---cCCCCCCEEEEeeCccHHHHHHHHHhChhh
Confidence 899999999999998852 2211111 001344444444443 23 347999999999999999887653
Q ss_pred -CC-eeEEEEEcCCcCCccc------------------------ccchh--hhhcc------------C-----------
Q 008873 434 -PD-VFQCAVSGAPVTSWDG------------------------YDTFY--TEKYM------------G----------- 462 (550)
Q Consensus 434 -~~-~~~~~v~~~~~~~~~~------------------------~~~~~--~~~~~------------g----------- 462 (550)
|+ .++++++.++..|+.. |.... .+.++ .
T Consensus 222 apel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~ 301 (462)
T 3guu_A 222 APELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLT 301 (462)
T ss_dssp CTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred cCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHh
Confidence 34 5888899888776421 00000 00000 0
Q ss_pred CCCCCcccccc-CCh---------hh--h---------hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEE
Q 008873 463 LPSEDPVGYEY-SSV---------MH--H---------VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILI 521 (550)
Q Consensus 463 ~~~~~~~~~~~-~~~---------~~--~---------~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 521 (550)
....+...+-. .++ +. . ..+.++|+||+||..|++||+.++.++++++++.|.++++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~~~~ 381 (462)
T 3guu_A 302 YPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGANINFSP 381 (462)
T ss_dssp CTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 00111111110 011 00 0 124568999999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 522 FPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 522 ~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
|++++|..... .....+++||+++|
T Consensus 382 y~~~~H~~~~~----~~~~d~l~WL~~r~ 406 (462)
T 3guu_A 382 YPIAEHLTAEI----FGLVPSLWFIKQAF 406 (462)
T ss_dssp ESSCCHHHHHH----HTHHHHHHHHHHHH
T ss_pred ECcCCccCchh----hhHHHHHHHHHHHh
Confidence 99999986332 23678899998764
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=149.45 Aligned_cols=195 Identities=12% Similarity=0.038 Sum_probs=122.8
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.||++||.+++.. .|......|++.||.|+++|+||+|.+.... ...++++.+.+..+.+.-
T Consensus 16 ~~~vvllHG~~~~~~-------~w~~~~~~L~~~~~~vi~~Dl~GhG~S~~~~---------~~~~~~~a~~l~~~l~~l 79 (264)
T 1r3d_A 16 TPLVVLVHGLLGSGA-------DWQPVLSHLARTQCAALTLDLPGHGTNPERH---------CDNFAEAVEMIEQTVQAH 79 (264)
T ss_dssp BCEEEEECCTTCCGG-------GGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTT
T ss_pred CCcEEEEcCCCCCHH-------HHHHHHHHhcccCceEEEecCCCCCCCCCCC---------ccCHHHHHHHHHHHHHHh
Confidence 478999999766543 3455677787689999999999999886421 012455555555555443
Q ss_pred CCCCCceEEEEechhHHHHHH---HHhhCCCeeEEEEEcCCcCCcccccc---------hhh------------hhccCC
Q 008873 408 LAKVGHIGLYGWSYGGYLSAI---TLARFPDVFQCAVSGAPVTSWDGYDT---------FYT------------EKYMGL 463 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~---~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~------------~~~~g~ 463 (550)
.++..++.|+||||||.+++. ++.++|++++++|+.++......... .+. ..+...
T Consensus 80 ~~~~~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (264)
T 1r3d_A 80 VTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQQ 159 (264)
T ss_dssp CCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTTS
T ss_pred CcCCCceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHHHHHhhh
Confidence 233224999999999999999 88889999999998876432211000 000 000000
Q ss_pred ---CCCC---------------cc----ccc------cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC
Q 008873 464 ---PSED---------------PV----GYE------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK 515 (550)
Q Consensus 464 ---~~~~---------------~~----~~~------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 515 (550)
.... .. .+. .......+.++++|+|+++|++|..++ .+.+.+ .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~---~- 230 (264)
T 1r3d_A 160 AVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-----QLAESS---G- 230 (264)
T ss_dssp GGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-----HHHHHH---C-
T ss_pred hhhhccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-----HHHHHh---C-
Confidence 0000 00 000 012233467789999999999997431 233333 2
Q ss_pred CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 516 PYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 516 ~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.++.++|++||.+ ..+....+.+.+.+||.++
T Consensus 231 -~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 262 (264)
T 1r3d_A 231 -LSYSQVAQAGHNV-HHEQPQAFAKIVQAMIHSI 262 (264)
T ss_dssp -SEEEEETTCCSCH-HHHCHHHHHHHHHHHHHHH
T ss_pred -CcEEEcCCCCCch-hhcCHHHHHHHHHHHHHHh
Confidence 5789999999987 4456778999999999875
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-17 Score=151.87 Aligned_cols=191 Identities=18% Similarity=0.193 Sum_probs=124.0
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 409 (550)
.||++||.+.+.. . |......|+ .+|.|+++|+||+|.+... ....+++. ++.+.+. +
T Consensus 15 ~vvllHG~~~~~~---~----w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~~---~~~l~~~--l 72 (258)
T 1m33_A 15 HLVLLHGWGLNAE---V----WRCIDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLADM---AEAVLQQ--A 72 (258)
T ss_dssp EEEEECCTTCCGG---G----GGGTHHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHHH---HHHHHTT--S
T ss_pred eEEEECCCCCChH---H----HHHHHHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHHH---HHHHHHH--h
Confidence 7889999765532 2 343466675 5899999999999987643 12234443 3344332 3
Q ss_pred CCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc------ccccc----hh-----------hhhcc-----CC
Q 008873 410 KVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW------DGYDT----FY-----------TEKYM-----GL 463 (550)
Q Consensus 410 d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~------~~~~~----~~-----------~~~~~-----g~ 463 (550)
+ +++.|+||||||.+++.++.++|++++++|+.++...+ ..... .+ ...+. +.
T Consensus 73 ~-~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 1m33_A 73 P-DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGT 151 (258)
T ss_dssp C-SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTS
T ss_pred C-CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 4 78999999999999999999999999999987754221 10000 00 00000 00
Q ss_pred C-----------------CCCccc-------cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEE
Q 008873 464 P-----------------SEDPVG-------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI 519 (550)
Q Consensus 464 ~-----------------~~~~~~-------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 519 (550)
+ ...... +...+....+.++++|+|+++|++|..+|+..+..+.+. -.+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~----~~~~~~ 227 (258)
T 1m33_A 152 ETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKL----WPHSES 227 (258)
T ss_dssp TTHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTT----CTTCEE
T ss_pred ccchhhHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCCHHHHHHHHHh----CccceE
Confidence 0 000000 001112234567889999999999999998766555432 246789
Q ss_pred EEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 520 LIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 520 ~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.++|+++|.+. .++...+.+.+.+||.+
T Consensus 228 ~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 228 YIFAKAAHAPF-ISHPAEFCHLLVALKQR 255 (258)
T ss_dssp EEETTCCSCHH-HHSHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 99999999873 35577889999999864
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=152.01 Aligned_cols=208 Identities=14% Similarity=0.105 Sum_probs=129.6
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEEC----CCCCCCCchhhHHHH
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLD----NRGTARRGLKFEASI 384 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d----~rG~g~~~~~~~~~~ 384 (550)
..+.+..+.|.+ +..|+||++||.+.+.. .|. .|..++..| +.||.|+++| +||+|.+....
T Consensus 24 ~~~~y~~~g~~~-----~~~~~vvllHG~~~~~~---~~~-~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~~~~---- 89 (335)
T 2q0x_A 24 PYCKIPVFMMNM-----DARRCVLWVGGQTESLL---SFD-YFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQDHAH---- 89 (335)
T ss_dssp TTEEEEEEEECT-----TSSSEEEEECCTTCCTT---CST-THHHHHHHH-TTTCEEEEECCGGGBTTSCSCCHHH----
T ss_pred CceeEEEeccCC-----CCCcEEEEECCCCcccc---chh-HHHHHHHHH-HCCcEEEEEeccCCCCCCCCccccC----
Confidence 556666565322 23478889999654321 121 233455666 7899999995 58888765311
Q ss_pred hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh--hCCCeeEEEEEcCCcCCccc--ccc-----h
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA--RFPDVFQCAVSGAPVTSWDG--YDT-----F 455 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~--~~~~~~~~~v~~~~~~~~~~--~~~-----~ 455 (550)
...|+.+.++++.++ ++.+++.|+||||||.+++.++. .+|++++++|+.+|..+... ... .
T Consensus 90 -------~~~d~~~~~~~l~~~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~~~~~~~~~~~~ 160 (335)
T 2q0x_A 90 -------DAEDVDDLIGILLRD--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPENPLFTPEGCAAR 160 (335)
T ss_dssp -------HHHHHHHHHHHHHHH--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTSTTTSHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHH--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchhcccCHHHHHHH
Confidence 157788888888764 35578999999999999999998 47999999999887643220 000 0
Q ss_pred --hhhh---------------ccCCCCCCccccc-------------------cCChhhhhhcCCCcEEEEecCCCCCCC
Q 008873 456 --YTEK---------------YMGLPSEDPVGYE-------------------YSSVMHHVHKMKGKLLLVHGMIDENVH 499 (550)
Q Consensus 456 --~~~~---------------~~g~~~~~~~~~~-------------------~~~~~~~~~~i~~P~lii~G~~D~~v~ 499 (550)
.... +...+. ....+. ..+....+.++++|+|+++|++|..+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp 239 (335)
T 2q0x_A 161 KEHVEKLMAEGRGEDSLAMLKHYDIPI-TPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKP 239 (335)
T ss_dssp HHHHHHHHHHTCTTCGGGGTTTCSSCC-CHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCC
T ss_pred HHHHHHHhhccCccccccchhhccCcc-CHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCC
Confidence 0000 000000 000000 001123467789999999999999999
Q ss_pred hHHH-HHHHHHHHHcCCCeE--------E-----EEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 500 FRHT-ARLINALVAARKPYE--------I-----LIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 500 ~~~~-~~~~~~l~~~~~~~~--------~-----~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+... ..+.+.+.+.-...+ + .++|+++| +..+.+.+||++.
T Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~ 294 (335)
T 2q0x_A 240 SDEEVGTVLEGVRDHTGCNRVTVSYFNDTCDELRRVLKAAES---------EHVAAILQFLADE 294 (335)
T ss_dssp CHHHHHHHHHHHHHHSSSSCEEEEECCCEECTTSCEEECCHH---------HHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhcCccccccccccchhhhhhcccCCCCC---------HHHHHHHHHHHhh
Confidence 8642 233444444333343 5 78999999 2378889998753
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-16 Score=138.00 Aligned_cols=170 Identities=14% Similarity=0.082 Sum_probs=116.7
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|.||++||.+++.. ..| ......+...+ +.++.+|.+. ....+..+.+..+.+.
T Consensus 16 ~~~~vv~~HG~~~~~~--~~~----~~~~~~~~~~~---~~v~~~~~~~---------------~~~~~~~~~~~~~~~~ 71 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSDD--EHW----QSHWERRFPHW---QRIRQREWYQ---------------ADLDRWVLAIRRELSV 71 (191)
T ss_dssp TTCEEEEECCTTCCCT--TSH----HHHHHHHCTTS---EECCCSCCSS---------------CCHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCch--hhH----HHHHHHhcCCe---EEEeccCCCC---------------cCHHHHHHHHHHHHHh
Confidence 3478999999875531 122 11222222233 4556666432 2245555555555544
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCc
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 486 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P 486 (550)
- + +++.|+|||+||.+++.++.++|++++++++.+|...... . .+. .....++++|
T Consensus 72 ~--~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~-------~---~~~-----------~~~~~~~~~P 127 (191)
T 3bdv_A 72 C--T-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRF-------E---IDD-----------RIQASPLSVP 127 (191)
T ss_dssp C--S-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGG-------T---CTT-----------TSCSSCCSSC
T ss_pred c--C-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccc-------c---Ccc-----------ccccccCCCC
Confidence 2 3 7899999999999999999999999999999998754321 0 000 0335677899
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCC--CcHHHHHHHHHHHHHHh
Q 008873 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRH--RDRIYMEERIWEFIERT 549 (550)
Q Consensus 487 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~--~~~~~~~~~~~~fl~~~ 549 (550)
+|+++|++|..+|++.+.++.+.+ +.++.++++++|.+... ....+..+.+.+||++.
T Consensus 128 ~lii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 187 (191)
T 3bdv_A 128 TLTFASHNDPLMSFTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEIL 187 (191)
T ss_dssp EEEEECSSBTTBCHHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHHHHh
Confidence 999999999999999998888875 47899999999997432 13345558899998753
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-18 Score=157.31 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=126.4
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
.+.|+||++||.++... .|..+...|++. |.|+++|+||+|.+... .....+.++.+.+..+.+
T Consensus 18 ~~~~~vv~~HG~~~~~~-------~~~~~~~~l~~~-~~v~~~d~~G~G~s~~~--------~~~~~~~~~~~~~~~~l~ 81 (267)
T 3fla_A 18 DARARLVCLPHAGGSAS-------FFFPLAKALAPA-VEVLAVQYPGRQDRRHE--------PPVDSIGGLTNRLLEVLR 81 (267)
T ss_dssp TCSEEEEEECCTTCCGG-------GGHHHHHHHTTT-EEEEEECCTTSGGGTTS--------CCCCSHHHHHHHHHHHTG
T ss_pred CCCceEEEeCCCCCCch-------hHHHHHHHhccC-cEEEEecCCCCCCCCCC--------CCCcCHHHHHHHHHHHHH
Confidence 45689999999866532 344456667654 99999999999866421 112235555555544444
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCe----eEEEEEcCCcCCccccc--------chhhhhcc---CCCC---CC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDV----FQCAVSGAPVTSWDGYD--------TFYTEKYM---GLPS---ED 467 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~----~~~~v~~~~~~~~~~~~--------~~~~~~~~---g~~~---~~ 467 (550)
.- +.+++.|+|||+||.+++.++.++|++ ++++++.++........ ..+..... +.+. .+
T Consensus 82 ~~--~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (267)
T 3fla_A 82 PF--GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLAD 159 (267)
T ss_dssp GG--TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHS
T ss_pred hc--CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccC
Confidence 32 457899999999999999999999985 78888776553211100 00000000 0000 00
Q ss_pred cc--------------ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCC
Q 008873 468 PV--------------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 533 (550)
Q Consensus 468 ~~--------------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~ 533 (550)
.+ ........ ...++++|+|+++|++|..+|+.....+.+.+ ..++++.++++ +|.+. .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~g-gH~~~-~~ 233 (267)
T 3fla_A 160 PELLAMVLPAIRSDYRAVETYRHE-PGRRVDCPVTVFTGDHDPRVSVGEARAWEEHT---TGPADLRVLPG-GHFFL-VD 233 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC-TTCCBSSCEEEEEETTCTTCCHHHHHGGGGGB---SSCEEEEEESS-STTHH-HH
T ss_pred HHHHHHHHHHHHHHHHhhhccccc-ccCcCCCCEEEEecCCCCCCCHHHHHHHHHhc---CCCceEEEecC-Cceee-cc
Confidence 00 00000000 11467899999999999999998777766544 33589999998 99863 35
Q ss_pred cHHHHHHHHHHHHHHh
Q 008873 534 DRIYMEERIWEFIERT 549 (550)
Q Consensus 534 ~~~~~~~~~~~fl~~~ 549 (550)
+...+.+.+.+||++.
T Consensus 234 ~~~~~~~~i~~fl~~~ 249 (267)
T 3fla_A 234 QAAPMIATMTEKLAGP 249 (267)
T ss_dssp THHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHhccc
Confidence 6778888999998653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=151.07 Aligned_cols=192 Identities=10% Similarity=0.068 Sum_probs=128.7
Q ss_pred CeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECC-CCeEEEEEEecCC--CceEEEEEECCCCceEEEEEeec
Q 008873 57 VKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVILVEEL 133 (550)
Q Consensus 57 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wsp-Dg~~i~~~~~r~~--~~~~l~~~~~~~g~~~~l~~~~~ 133 (550)
+...|+++|+++++.+++... ...+..+.||| ||+.|++...... ...+||.+++++++.+.|+....
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~---------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQE---------NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE 236 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEE---------SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred CcceEEEEECCCCceEEeecC---------CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence 447899999999998877532 33567899999 9999998876432 24579999999998888765432
Q ss_pred CceeeccCccccCCCCCccCCCc--EEEEEccCCcc--EEEEEeCCCceeecccccCeEEEE---E--EeEeecCCEEEE
Q 008873 134 DSWVNLHDCFTPLDKGVTKYSGG--FIWASEKTGFR--HLYLHDINGTCLGPITEGDWMVEQ---I--VGVNEASGQVYF 204 (550)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~--~l~~~~~~~~~~~~lT~~~~~~~~---~--~~~s~dg~~l~f 204 (550)
..+.. .+ .|++|+ ++|.+.+.+.. .||++++++++.++|+........ + ..|+|||+.|+|
T Consensus 237 ~~~~~-~~---------~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 237 GESCT-HE---------FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp TEEEE-EE---------EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred Ccccc-cc---------eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence 11211 11 245554 77888876655 499999999988888764432111 1 149999999998
Q ss_pred EEcCC----CCceeEEEEEEeCCCCCCCCCCCeeeCCCCc------------eEEEEECCCCCEEEEeecCCCCCCEEEE
Q 008873 205 TGTLD----GPLESHLYCAKLYPDWNHTLEAPVKLTNGKG------------KHVAVLDHNMRNFVDFHDSLDSPPRILL 268 (550)
Q Consensus 205 ~~~~~----~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~------------~~~~~~s~dg~~l~~~~s~~~~p~~l~~ 268 (550)
..... ......||.+++ .++ +.++|+...+ ...+.|||||+.|++.... ...++||+
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~--~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~-~g~~~l~~ 379 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNM--KNG----TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV-HGKPALYL 379 (388)
T ss_dssp ----------CCCCEEEEEET--TTT----EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEE
T ss_pred EeeeccccccCCCCEEEEEec--cCC----ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC-CCceeEEE
Confidence 86531 122468999998 443 4566665433 4556899999999888654 45679999
Q ss_pred EEcCCC
Q 008873 269 CSLQDG 274 (550)
Q Consensus 269 ~~~~~g 274 (550)
+++.++
T Consensus 380 ~~l~~~ 385 (388)
T 3pe7_A 380 ATLPES 385 (388)
T ss_dssp EECCGG
T ss_pred EECChh
Confidence 998544
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=151.40 Aligned_cols=206 Identities=12% Similarity=0.066 Sum_probs=133.1
Q ss_pred CCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh------CCcEEEEE
Q 008873 296 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS------KGILVWKL 368 (550)
Q Consensus 296 ~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~------~G~~vv~~ 368 (550)
.+.+.+++.+. -|.....++|.|++.....+++|||+++||... |. ......+.++. .+++||++
T Consensus 10 ~~v~~~~~~S~~l~~~r~~~VylP~~y~~~~~~yPVlylldG~~~-------f~-~~~~~~~~l~~~~~~~~~~~IvV~i 81 (331)
T 3gff_A 10 VEYQSKRLESRLLKETREYVIALPEGYAQSLEAYPVVYLLDGEDQ-------FD-HMASLLQFLSQGTMPQIPKVIIVGI 81 (331)
T ss_dssp -CEEEEEEEETTTTEEEEEEEECCTTGGGSCCCEEEEEESSHHHH-------HH-HHHHHHHHHTCSSSCSSCCCEEEEE
T ss_pred ceEEEEEEEecCCCCeEEEEEEeCCCCCCCCCCccEEEEecChhh-------hH-HHHHHHHHHHhhhhcCCCCEEEEEE
Confidence 45577778775 477899999999986432478999999999421 11 01112344443 36899998
Q ss_pred CCCCCCCCchhhHHH-------------Hhh-ccCCCchHHHH--HHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 369 DNRGTARRGLKFEAS-------------IKH-NCGRIDAEDQL--TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 369 d~rG~g~~~~~~~~~-------------~~~-~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
+... +..++... ... ..+...+.+.+ +.+.++.++..+++.| +|+|+||||+++++++.+
T Consensus 82 ~~~~---R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~ 157 (331)
T 3gff_A 82 HNTN---RMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRT 157 (331)
T ss_dssp CCSS---HHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHT
T ss_pred CCCC---cccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHh
Confidence 7621 11110000 000 00011122222 4455666665566655 799999999999999999
Q ss_pred CCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCCh-hhhhhcCCCcEEEEecCCCC-------CCChHHHH
Q 008873 433 FPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSV-MHHVHKMKGKLLLVHGMIDE-------NVHFRHTA 504 (550)
Q Consensus 433 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~i~~P~lii~G~~D~-------~v~~~~~~ 504 (550)
+|++|+++++.+|...|.... .+..... +........|+++.||+.|. .++...+.
T Consensus 158 ~p~~F~~~~~~S~~~w~~~~~----------------~~~~~~~~~~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~ 221 (331)
T 3gff_A 158 DRPLFSAYLALDTSLWFDSPH----------------YLTLLEERVVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNL 221 (331)
T ss_dssp TCSSCSEEEEESCCTTTTTTH----------------HHHHHHHHHHHCCCSSEEEEEEECCCSEETTTEECCHHHHHHH
T ss_pred CchhhheeeEeCchhcCChHH----------------HHHHHHHHhhcccCCCCeEEEEeCCCCCCCccchHHHHHHHHH
Confidence 999999999999975432110 0000000 11111235799999999998 57788889
Q ss_pred HHHHHHHHc---CCCeEEEEcCCCCCcC
Q 008873 505 RLINALVAA---RKPYEILIFPDERHMP 529 (550)
Q Consensus 505 ~~~~~l~~~---~~~~~~~~~p~~~H~~ 529 (550)
+++++|++. |.++++.+||+++|+.
T Consensus 222 ~l~~~Lk~~~~~g~~~~~~~~pg~~H~s 249 (331)
T 3gff_A 222 AFADKLTKLAPKGLGFMAKYYPEETHQS 249 (331)
T ss_dssp HHHHHHHHHCCTTEEEEEEECTTCCTTT
T ss_pred HHHHHHHhccCCCceEEEEECCCCCccc
Confidence 999999986 6689999999999985
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-18 Score=163.20 Aligned_cols=212 Identities=14% Similarity=0.043 Sum_probs=127.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|..+++... ++.|+||++||.+++.. .|...++.|+ +||.|+++|+||+|.+.......
T Consensus 13 ~g~~~~~~~~---------g~~p~vv~lHG~~~~~~-------~~~~~~~~l~-~g~~v~~~D~~G~G~s~~~~~~~--- 72 (304)
T 3b12_A 13 GDVTINCVVG---------GSGPALLLLHGFPQNLH-------MWARVAPLLA-NEYTVVCADLRGYGGSSKPVGAP--- 72 (304)
Confidence 6666655432 12378999999776543 2333466676 79999999999999776431100
Q ss_pred ccCCCc----hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc--------
Q 008873 387 NCGRID----AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT-------- 454 (550)
Q Consensus 387 ~~~~~~----~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------- 454 (550)
...... .+|+.++++.+ +.+++.|+|||+||.+++.++.++|++++++|+.+|.........
T Consensus 73 ~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 146 (304)
T 3b12_A 73 DHANYSFRAMASDQRELMRTL------GFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARA 146 (304)
Confidence 001112 34444444443 345899999999999999999999999999999887643211000
Q ss_pred -----------------------hhhhh-cc----CC----CCCCcccc-----------------ccC---Chh----h
Q 008873 455 -----------------------FYTEK-YM----GL----PSEDPVGY-----------------EYS---SVM----H 478 (550)
Q Consensus 455 -----------------------~~~~~-~~----g~----~~~~~~~~-----------------~~~---~~~----~ 478 (550)
.+... ++ .. +.+..+.+ ... ... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (304)
T 3b12_A 147 YWHWYFLQQPAPYPEKVIGADPDTFYEGCLFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGD 226 (304)
Confidence 00000 00 00 00000000 000 000 0
Q ss_pred hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 479 ~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+.++++|+|+++|++|..+++....+..+++ ..++++.++ ++||.+ ..++...+.+.+.+||+++
T Consensus 227 ~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i-~~gH~~-~~e~p~~~~~~i~~fl~~~ 292 (304)
T 3b12_A 227 LGRQVQCPALVFSGSAGLMHSLFEMQVVWAPR---LANMRFASL-PGGHFF-VDRFPDDTARILREFLSDA 292 (304)
Confidence 15678899999999999665443333333333 234667778 999987 4466778889999999764
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-17 Score=166.21 Aligned_cols=211 Identities=17% Similarity=0.154 Sum_probs=143.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC-cEEEEECCC-CCCCCch--hhHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-ILVWKLDNR-GTARRGL--KFEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G-~~vv~~d~r-G~g~~~~--~~~~~~~~ 386 (550)
+...+|.|.... +++|+||++|||+........+ ......|+++| ++||.+||| |..+++. .+.. .
T Consensus 83 L~l~v~~P~~~~---~~~PviV~iHGGg~~~g~~~~~----~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~~---~ 152 (489)
T 1qe3_A 83 LYVNVFAPDTPS---QNLPVMVWIHGGAFYLGAGSEP----LYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDE---A 152 (489)
T ss_dssp CEEEEEEECSSC---CSEEEEEEECCSTTTSCCTTSG----GGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCT---T
T ss_pred CEEEEEeCCCCC---CCCCEEEEECCCccccCCCCCc----ccCHHHHHhcCCEEEEecCccCcccccCccccccc---c
Confidence 566778886531 4589999999987543221111 11256677665 999999999 3322211 1110 1
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcCCcccccch--hhh-
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTSWDGYDTF--YTE- 458 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~--~~~- 458 (550)
..+...+.|+.++++|+.+. ..+|++||+|+|+|+||++++.++... +++|+++|+.+|..++...... ...
T Consensus 153 ~~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~ 232 (489)
T 1qe3_A 153 YSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAAA 232 (489)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 22344588999999999875 346999999999999999998888753 5789999999998755432211 111
Q ss_pred --hccCCCCCCccccccCChhhhhh---------cCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 008873 459 --KYMGLPSEDPVGYEYSSVMHHVH---------KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527 (550)
Q Consensus 459 --~~~g~~~~~~~~~~~~~~~~~~~---------~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H 527 (550)
..+|.+.+..+.++..+....+. ....|.+++++..|..+.+.+..+++++.+..++++.+-.+++++|
T Consensus 233 ~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~~~g~~~~Eg~ 312 (489)
T 1qe3_A 233 FLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRDEGY 312 (489)
T ss_dssp HHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETTGGG
T ss_pred HHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCCCCCCCEEEeeecchhH
Confidence 12355444444444444322211 2334578899999999999999999988888889999999999999
Q ss_pred cCCC
Q 008873 528 MPRR 531 (550)
Q Consensus 528 ~~~~ 531 (550)
.+..
T Consensus 313 ~~~~ 316 (489)
T 1qe3_A 313 LFFT 316 (489)
T ss_dssp GTCC
T ss_pred hhcc
Confidence 8754
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.7e-16 Score=148.20 Aligned_cols=212 Identities=13% Similarity=0.086 Sum_probs=131.9
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.+|..+++....+ ++.|.||++||.+.+.. .| ......|++. |.|+++|+||+|.+....
T Consensus 28 ~~g~~l~y~~~G~-------g~~~~vvllHG~~~~~~---~w----~~~~~~L~~~-~~via~Dl~GhG~S~~~~----- 87 (318)
T 2psd_A 28 VLDSFINYYDSEK-------HAENAVIFLHGNATSSY---LW----RHVVPHIEPV-ARCIIPDLIGMGKSGKSG----- 87 (318)
T ss_dssp ETTEEEEEEECCS-------CTTSEEEEECCTTCCGG---GG----TTTGGGTTTT-SEEEEECCTTSTTCCCCT-----
T ss_pred eCCeEEEEEEcCC-------CCCCeEEEECCCCCcHH---HH----HHHHHHhhhc-CeEEEEeCCCCCCCCCCC-----
Confidence 3677777664321 23368999999876542 23 3345566554 799999999999876420
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCC-CceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC----Ccccccc---h--
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKV-GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT----SWDGYDT---F-- 455 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~-~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~----~~~~~~~---~-- 455 (550)
.+...++++.+.+..+++.- +. +++.|+||||||.+++.+|.++|++++++|+.++.. .+..... .
T Consensus 88 --~~~~~~~~~a~dl~~ll~~l--~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 163 (318)
T 2psd_A 88 --NGSYRLLDHYKYLTAWFELL--NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDIA 163 (318)
T ss_dssp --TSCCSHHHHHHHHHHHHTTS--CCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTTSCSCHHHHH
T ss_pred --CCccCHHHHHHHHHHHHHhc--CCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhhhhhHHHHHH
Confidence 11234666666666666542 34 689999999999999999999999999999865321 1110000 0
Q ss_pred ----------------hhhhcc--C-CCCCCc---cc-----------------c-ccC-----C----------hhhhh
Q 008873 456 ----------------YTEKYM--G-LPSEDP---VG-----------------Y-EYS-----S----------VMHHV 480 (550)
Q Consensus 456 ----------------~~~~~~--g-~~~~~~---~~-----------------~-~~~-----~----------~~~~~ 480 (550)
+.+..+ . ...... +. + ... . ....+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (318)
T 2psd_A 164 LIKSEEGEKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYL 243 (318)
T ss_dssp HHHSTHHHHHHTTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhcchHHHHhhccccccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHHHHHHHHHHh
Confidence 000000 0 000000 00 0 000 0 01124
Q ss_pred hcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 481 HKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 481 ~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.++ ++|+|+++|+.| .+++ .+.++.+.+ ...+++++ ++||.+ ..+....+.+.+.+||++.
T Consensus 244 ~~i~~~P~Lvi~G~~D-~~~~-~~~~~~~~~----~~~~~~~i-~~gH~~-~~e~p~~~~~~i~~fl~~~ 305 (318)
T 2psd_A 244 RASDDLPKLFIESDPG-FFSN-AIVEGAKKF----PNTEFVKV-KGLHFL-QEDAPDEMGKYIKSFVERV 305 (318)
T ss_dssp HTCTTSCEEEEEEEEC-SSHH-HHHHHHTTS----SSEEEEEE-EESSSG-GGTCHHHHHHHHHHHHHHH
T ss_pred ccccCCCeEEEEeccc-cCcH-HHHHHHHhC----CCcEEEEe-cCCCCC-HhhCHHHHHHHHHHHHHHh
Confidence 567 999999999999 8876 555554332 45677778 679976 4567888999999999763
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-15 Score=146.79 Aligned_cols=212 Identities=10% Similarity=-0.015 Sum_probs=142.7
Q ss_pred EEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCCCC
Q 008873 7 YWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYD 86 (550)
Q Consensus 7 ~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 86 (550)
..|||||++|||++..++. .+||++|+++++.++++.. .
T Consensus 41 ~~~SpDg~~l~~~~~~~g~---------------------------------~~l~~~d~~~g~~~~lt~~--------~ 79 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGP---------------------------------WNYYLLDLNTQVATQLTEG--------R 79 (388)
T ss_dssp CCBCTTSCEEEEEECTTSS---------------------------------CEEEEEETTTCEEEECCCS--------S
T ss_pred ccCCCCCCEEEEEEcCCCC---------------------------------ceEEEEeCCCCceEEeeeC--------C
Confidence 5699999999998653221 4689999999998887432 1
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEE-EE-c-
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIW-AS-E- 162 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s-~- 162 (550)
......+.|||||+.|++.... ..||++++++|+.+.++.... .|..... +. .++++ ++. .. +
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~----~~l~~~d~~~g~~~~~~~~~~-~~~~~~~-~~-------~~~dg~~l~~~~~~~ 146 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDG----RNLMRVDLATLEENVVYQVPA-EWVGYGT-WV-------ANSDCTKLVGIEIRR 146 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETT----TEEEEEETTTCCEEEEEECCT-TEEEEEE-EE-------ECTTSSEEEEEEEEG
T ss_pred CCCccceEEcCCCCEEEEEeCC----CeEEEEECCCCcceeeeechh-hcccccc-ee-------ECCCCCeeccccccC
Confidence 1122246899999999988743 259999999999988876433 2221100 00 12333 322 21 0
Q ss_pred -----------------cCCccEEEEEeCCCceeecccccCeEEEEEEeEee-cCCEEEEEEcCCC-CceeEEEEEEeCC
Q 008873 163 -----------------KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE-ASGQVYFTGTLDG-PLESHLYCAKLYP 223 (550)
Q Consensus 163 -----------------~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~-dg~~l~f~~~~~~-~~~~~l~~v~~~~ 223 (550)
.....+||++++++++.++|+.+...+..+ .||| ||++|+|...... .....||.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~-~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~-- 223 (388)
T 3pe7_A 147 EDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHP-IYRPYDDSTVAFCHEGPHDLVDARMWLINE-- 223 (388)
T ss_dssp GGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEE-EEETTEEEEEEEEECSCTTTSSCSEEEEET--
T ss_pred cccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcccccc-EECCCCCCEEEEEEecCCCCCcceEEEEeC--
Confidence 112378999999999989998765445555 4999 9999999987421 12458999998
Q ss_pred CCCCCCCCCeeeCCCCc---eEEEEECCCCCEEEEeecCCCCC-CEEEEEEcCCCceeEec
Q 008873 224 DWNHTLEAPVKLTNGKG---KHVAVLDHNMRNFVDFHDSLDSP-PRILLCSLQDGSLVLPL 280 (550)
Q Consensus 224 ~g~~~~~~~~~lt~~~~---~~~~~~s~dg~~l~~~~s~~~~p-~~l~~~~~~~g~~~~~l 280 (550)
++. ..++++.... ...+.|||||+.|+++......+ ..|+++++.+++. +.+
T Consensus 224 ~~~----~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l 279 (388)
T 3pe7_A 224 DGT----NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-RQL 279 (388)
T ss_dssp TSC----CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-EEE
T ss_pred CCC----ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-EEE
Confidence 454 5667776442 44568999999998876544333 2599999988863 444
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=147.44 Aligned_cols=216 Identities=11% Similarity=0.004 Sum_probs=128.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.+|..+++....+ + ...|.||++||.+.+.. .|......|+ .+|.|+++|.||+|.|....
T Consensus 11 ~~g~~l~y~~~~~-G-----~~~p~vvllHG~~~~~~-------~w~~~~~~L~-~~~rvia~DlrGhG~S~~~~----- 71 (276)
T 2wj6_A 11 VFDNKLSYIDNQR-D-----TDGPAILLLPGWCHDHR-------VYKYLIQELD-ADFRVIVPNWRGHGLSPSEV----- 71 (276)
T ss_dssp ETTEEEEEEECCC-C-----CSSCEEEEECCTTCCGG-------GGHHHHHHHT-TTSCEEEECCTTCSSSCCCC-----
T ss_pred eCCeEEEEEEecC-C-----CCCCeEEEECCCCCcHH-------HHHHHHHHHh-cCCEEEEeCCCCCCCCCCCC-----
Confidence 3677777765421 2 12277899999766532 3444566665 57999999999999886321
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-CCeeEEEEEcCCcCCccc--c----------
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-PDVFQCAVSGAPVTSWDG--Y---------- 452 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-~~~~~~~v~~~~~~~~~~--~---------- 452 (550)
+...++++.+.+..+.+.- +.+++.|+||||||.+++.++.++ |++++++|+.++...... +
T Consensus 72 ---~~~~~~~~a~dl~~ll~~l--~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~ 146 (276)
T 2wj6_A 72 ---PDFGYQEQVKDALEILDQL--GVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDP 146 (276)
T ss_dssp ---CCCCHHHHHHHHHHHHHHH--TCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHHHHHHHHCT
T ss_pred ---CCCCHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHHHhhhccCc
Confidence 1123444444433333321 346899999999999999999999 999999999875321000 0
Q ss_pred cch------hhhhccCCC--------------CCCccccc------------cCChhhhhhcCCCcEEEEecCCCCCCCh
Q 008873 453 DTF------YTEKYMGLP--------------SEDPVGYE------------YSSVMHHVHKMKGKLLLVHGMIDENVHF 500 (550)
Q Consensus 453 ~~~------~~~~~~g~~--------------~~~~~~~~------------~~~~~~~~~~i~~P~lii~G~~D~~v~~ 500 (550)
..+ ....+.... ......+. ..++...+.++++|+|+++|..|...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~~~~~~~~~ 226 (276)
T 2wj6_A 147 ERWREGTHGLFDVWLDGHDEKRVRHHLLEEMADYGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPE 226 (276)
T ss_dssp TTHHHHHHHHHHHHHTTBCCHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEEECCSCSHH
T ss_pred chHHHHHHHHHHHhhcccchHHHHHHHHHHhhhcchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEEecCccchh
Confidence 000 000000000 00000000 0112334667889999998754433221
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 501 RHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 501 ~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
. ....+.+.+.-...++.++|++||.. ..+....+.+.+.+||.+
T Consensus 227 ~--~~~~~~~~~~~p~a~~~~i~~~gH~~-~~e~P~~~~~~i~~Fl~~ 271 (276)
T 2wj6_A 227 Y--EKINSDFAEQHPWFSYAKLGGPTHFP-AIDVPDRAAVHIREFATA 271 (276)
T ss_dssp H--HHHHHHHHHHCTTEEEEECCCSSSCH-HHHSHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHhhCCCeEEEEeCCCCCcc-cccCHHHHHHHHHHHHhh
Confidence 1 11222333334578999999999986 446678889999999975
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-13 Score=136.79 Aligned_cols=191 Identities=18% Similarity=0.161 Sum_probs=138.0
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
..|+++|++++..+.+.-. ...+..++|||||+.|++..... ....|++.++++|+.+.+........
T Consensus 159 ~~i~i~d~~g~~~~~l~~~---------~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~~l~~~~~~~~-- 226 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS---------PQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHNG-- 226 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE---------SSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEEEEECCSSCEE--
T ss_pred ceEEEEcCCCCCCEEEeCC---------CCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEEEeecCCCccc--
Confidence 4789999998887776432 34578899999999998887543 23579999999999887765332211
Q ss_pred ccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.+ .|+||+ +++....+|..+||++++++++.++|+.....+..+ .|+|||+.|+|.+..++. .+|
T Consensus 227 -----~~-----~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~spdg~~l~~~s~~~g~--~~i 293 (415)
T 2hqs_A 227 -----AP-----AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAFTSDQAGR--PQV 293 (415)
T ss_dssp -----EE-----EECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEE-EECTTSSEEEEEECTTSS--CEE
T ss_pred -----CE-----EEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccce-EECCCCCEEEEEECCCCC--cEE
Confidence 11 345555 666666777889999999888888888765555555 499999999999876543 689
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
|.+++ .+. +.++++.... ...+.|||||++|++..... ....|+++++.+++. +.+..
T Consensus 294 ~~~d~--~~~----~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~-g~~~i~~~d~~~~~~-~~l~~ 352 (415)
T 2hqs_A 294 YKVNI--NGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGV-QVLSS 352 (415)
T ss_dssp EEEET--TSS----CCEECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCE-EECCC
T ss_pred EEEEC--CCC----CEEEEecCCCcccCeEECCCCCEEEEEECcC-CceEEEEEECCCCCE-EEecC
Confidence 99998 443 4556665433 55678999999998876542 345899999987764 55543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-14 Score=134.83 Aligned_cols=207 Identities=14% Similarity=0.152 Sum_probs=144.3
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC-CceEEEEcccCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GPVSWMDLQCGGTD 82 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~ 82 (550)
..++.|||||++|++.. + ..|+++|+++ ++...+...
T Consensus 44 v~~~~~spdg~~l~~~~-~------------------------------------~~i~~~d~~~~~~~~~~~~~----- 81 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS-E------------------------------------GLLYRLSLAGDPSPEKVDTG----- 81 (297)
T ss_dssp CEEEEECTTSSEEEEEE-T------------------------------------TEEEEEESSSCCSCEECCCT-----
T ss_pred eEeeEECCCCCEEEEEc-C------------------------------------CeEEEEeCCCCCCceEeccc-----
Confidence 46788999999998853 1 1478999999 877665321
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEE
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWA 160 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 160 (550)
.....+..++|||||+.+++..........||.++.++++.+.+...... ... .|++++ +++.
T Consensus 82 --~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~-----~~spdg~~l~~~ 146 (297)
T 2ojh_A 82 --FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPS--------YWH-----GWSPDGKSFTYC 146 (297)
T ss_dssp --TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSE--------EEE-----EECTTSSEEEEE
T ss_pred --cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCc--------cce-----EECCCCCEEEEE
Confidence 11245567899999999888875544456899999999887665432211 001 245544 5556
Q ss_pred EccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc
Q 008873 161 SEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 240 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~ 240 (550)
...++..+||.++.++++.+.++.....+..+ .|+|+|+.|++.+..++ ...||.++. .+. ....++....
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~--~~~i~~~~~--~~~----~~~~~~~~~~ 217 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGP-DYSPDGRWIYFNSSRTG--QMQIWRVRV--DGS----SVERITDSAY 217 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEE-EECTTSSEEEEEECTTS--SCEEEEEET--TSS----CEEECCCCSE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccc-eECCCCCEEEEEecCCC--CccEEEECC--CCC----CcEEEecCCc
Confidence 66677789999998888888887765555555 49999999999887554 378998886 343 4556655433
Q ss_pred -eEEEEECCCCCEEEEeecCCC-------CCCEEEEEEcCCCce
Q 008873 241 -KHVAVLDHNMRNFVDFHDSLD-------SPPRILLCSLQDGSL 276 (550)
Q Consensus 241 -~~~~~~s~dg~~l~~~~s~~~-------~p~~l~~~~~~~g~~ 276 (550)
...+.|+|||++|++...... ....|+++++.+++.
T Consensus 218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 455689999999988766532 225799999877653
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-17 Score=153.13 Aligned_cols=216 Identities=11% Similarity=0.098 Sum_probs=132.7
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCC--CCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGG--PCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg--~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
.+...+...++ .+.++ +.+ ..|+||++||. +++.. .|......|+ .||.|+++|+||+|.
T Consensus 21 ~~~~~v~~~~~-~~~~~-~~~--------~~p~vv~lHG~G~~~~~~-------~~~~~~~~L~-~~~~vi~~D~~G~G~ 82 (292)
T 3l80_A 21 LNKEMVNTLLG-PIYTC-HRE--------GNPCFVFLSGAGFFSTAD-------NFANIIDKLP-DSIGILTIDAPNSGY 82 (292)
T ss_dssp CEEEEECCTTS-CEEEE-EEC--------CSSEEEEECCSSSCCHHH-------HTHHHHTTSC-TTSEEEEECCTTSTT
T ss_pred cCcceEEecCc-eEEEe-cCC--------CCCEEEEEcCCCCCcHHH-------HHHHHHHHHh-hcCeEEEEcCCCCCC
Confidence 35555655444 45544 211 22899999973 22211 2333455555 699999999999997
Q ss_pred CchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc---------
Q 008873 376 RGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV--------- 446 (550)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~--------- 446 (550)
+... ......++++.+.+..+.++- ..+++.|+|||+||.+++.++.++|++++++|+.+|.
T Consensus 83 S~~~-------~~~~~~~~~~~~~l~~~l~~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 153 (292)
T 3l80_A 83 SPVS-------NQANVGLRDWVNAILMIFEHF--KFQSYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGF 153 (292)
T ss_dssp SCCC-------CCTTCCHHHHHHHHHHHHHHS--CCSEEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCCCHHHHHHCT
T ss_pred CCCC-------CcccccHHHHHHHHHHHHHHh--CCCCeEEEEEchhHHHHHHHHHhCchheeeEEEECCCCcchhhhcc
Confidence 7611 111234666666666666553 3358999999999999999999999999999999843
Q ss_pred CC-c--------ccccc------h--------hhhh---------------cc-CCCCCCccccc---cCChhhhhhcCC
Q 008873 447 TS-W--------DGYDT------F--------YTEK---------------YM-GLPSEDPVGYE---YSSVMHHVHKMK 484 (550)
Q Consensus 447 ~~-~--------~~~~~------~--------~~~~---------------~~-g~~~~~~~~~~---~~~~~~~~~~i~ 484 (550)
.. . ..... . +... .. ..+......+. ..+....+.+ +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~ 232 (292)
T 3l80_A 154 SSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQFKQLWRGYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISE-K 232 (292)
T ss_dssp TSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTTTSTTCCSSCCCCGGGGCCCCCT-T
T ss_pred ccccchhHHHHHHHHhccCchhhhHhhccccccCHHHHHHhHHHHHHHHHHHHhhhhccccchhhhhcchhhhhccCC-C
Confidence 22 0 00000 0 0000 00 00000011111 1111123445 7
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 485 GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 485 ~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+|+|+++|+.|..+++. + ++.+ .-...+ +++++++|.+ ..++...+.+.+.+||+++
T Consensus 233 ~P~lii~g~~D~~~~~~-~-~~~~----~~~~~~-~~~~~~gH~~-~~e~p~~~~~~i~~fl~~~ 289 (292)
T 3l80_A 233 IPSIVFSESFREKEYLE-S-EYLN----KHTQTK-LILCGQHHYL-HWSETNSILEKVEQLLSNH 289 (292)
T ss_dssp SCEEEEECGGGHHHHHT-S-TTCC----CCTTCE-EEECCSSSCH-HHHCHHHHHHHHHHHHHTC
T ss_pred CCEEEEEccCccccchH-H-HHhc----cCCCce-eeeCCCCCcc-hhhCHHHHHHHHHHHHHhc
Confidence 89999999999988877 4 4432 223456 8999999987 3456788899999999865
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=154.11 Aligned_cols=233 Identities=10% Similarity=-0.023 Sum_probs=146.1
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+.|||||++|+|...+...- ++ +....++++|+++++.++++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~---------------------r~------~~~~~~~~~d~~~~~~~~l~--------- 108 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQW---------------------RH------SYTASYDIYDLNKRQLITEE--------- 108 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECS---------------------SS------CEEEEEEEEETTTTEECCSS---------
T ss_pred cceEECCCCCEEEEEECCeeeE---------------------EE------ccceEEEEEECCCCcEEEcc---------
Confidence 3489999999999987643210 00 12367899999999876552
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee-eccCc-------cccCCCCCccCCCc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV-NLHDC-------FTPLDKGVTKYSGG 156 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~ 156 (550)
.....+..++|||||+.|+|+.+ .+||++++++|+.++|+......++ +..+. +.. ...+.|+||+
T Consensus 109 ~~~~~~~~~~~SPdG~~la~~~~-----~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~-~~~~~wSpDg 182 (740)
T 4a5s_A 109 RIPNNTQWVTWSPVGHKLAYVWN-----NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA-YSALWWSPNG 182 (740)
T ss_dssp CCCTTEEEEEECSSTTCEEEEET-----TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS-SBCEEECTTS
T ss_pred cCCCcceeeEECCCCCEEEEEEC-----CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC-CcceEECCCC
Confidence 22345778999999999999853 2599999999999988764332211 11000 000 0112466666
Q ss_pred --EEEEEccCC---------------------------------ccEEEEEeCCC---c---eeecccc------cCeEE
Q 008873 157 --FIWASEKTG---------------------------------FRHLYLHDING---T---CLGPITE------GDWMV 189 (550)
Q Consensus 157 --~~~~s~~~g---------------------------------~~~l~~~~~~~---~---~~~~lT~------~~~~~ 189 (550)
++|.+...+ ...|+++++++ + +.++|+. .+..+
T Consensus 183 ~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (740)
T 4a5s_A 183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYL 262 (740)
T ss_dssp SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEE
T ss_pred CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEE
Confidence 666542211 12689999988 7 5666764 34444
Q ss_pred EEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC--CCCCeee-CC-CCc------eEEEEECCCCCEEEEeecC
Q 008873 190 EQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT--LEAPVKL-TN-GKG------KHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 190 ~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~--~~~~~~l-t~-~~~------~~~~~~s~dg~~l~~~~s~ 259 (550)
..+ .|||||+.+++..++... ...|+.+++. .|... ......+ +. ..+ ...+.|||||+.|++..+.
T Consensus 263 ~~~-~wspdg~~~~~~~~r~~~-~~~i~~~d~~-tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~ 339 (740)
T 4a5s_A 263 CDV-TWATQERISLQWLRRIQN-YSVMDICDYD-ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN 339 (740)
T ss_dssp EEE-EEEETTEEEEEEEESSTT-EEEEEEEEEE-TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred EEE-EEeCCCeEEEEEeCCCCC-EEEEEEEECC-CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc
Confidence 555 499999977777776432 4678888873 22100 0012222 11 111 1256899999999866666
Q ss_pred CCCCCEEEEEEcCCCceeEeccCC
Q 008873 260 LDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 260 ~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
.+.-.+||++++.+++ .++|+..
T Consensus 340 ~~G~~~l~~~~~~~~~-~~~lT~g 362 (740)
T 4a5s_A 340 EEGYRHICYFQIDKKD-CTFITKG 362 (740)
T ss_dssp TTSCEEEEEEETTCSS-CEESCCS
T ss_pred CCCceEEEEEECCCCc-eEecccC
Confidence 6666799999986554 5677754
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=142.98 Aligned_cols=127 Identities=13% Similarity=-0.024 Sum_probs=94.2
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhC---------CcEEEEEC
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK---------GILVWKLD 369 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~---------G~~vv~~d 369 (550)
..+.+. .+|..|++....+.. +..|.||++||.+++.. .|......|++. ||.|+++|
T Consensus 69 ~~~~~~-i~g~~i~~~~~~~~~-----~~~~plll~HG~~~s~~-------~~~~~~~~L~~~~~~~~~~~~~~~vi~~d 135 (388)
T 4i19_A 69 PQFTTE-IDGATIHFLHVRSPE-----PDATPMVITHGWPGTPV-------EFLDIIGPLTDPRAHGGDPADAFHLVIPS 135 (388)
T ss_dssp CEEEEE-ETTEEEEEEEECCSS-----TTCEEEEEECCTTCCGG-------GGHHHHHHHHCGGGGTSCGGGCEEEEEEC
T ss_pred CcEEEE-ECCeEEEEEEccCCC-----CCCCeEEEECCCCCCHH-------HHHHHHHHHhCcccccCCCCCCeEEEEEc
Confidence 344444 378999988887654 23477899999887643 344456777765 99999999
Q ss_pred CCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 370 NRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 370 ~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
.||+|.+..... ......++.+.+..+.++- ..+++.++||||||.+++.++.++|++++++++.+|..
T Consensus 136 l~G~G~S~~~~~-------~~~~~~~~a~~~~~l~~~l--g~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 136 LPGFGLSGPLKS-------AGWELGRIAMAWSKLMASL--GYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp CTTSGGGCCCSS-------CCCCHHHHHHHHHHHHHHT--TCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred CCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHc--CCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 999997754221 1234677777777666552 34689999999999999999999999999999988643
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-17 Score=155.07 Aligned_cols=228 Identities=11% Similarity=-0.035 Sum_probs=117.0
Q ss_pred CCeEEEEEcCCCcE-EEEEEEcCCCCC-----CCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC
Q 008873 297 PPDIVQIQANDGTV-LYGALYKPDESR-----YGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN 370 (550)
Q Consensus 297 ~~~~~~~~~~~g~~-l~~~~~~P~~~~-----~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~ 370 (550)
..|.+.|++.++.. ...|+..+.... ......|.||++||.+++.. .|..++..|++ ||.|+++|+
T Consensus 14 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvllHG~~~~~~-------~~~~l~~~L~~-~~~v~~~D~ 85 (280)
T 3qmv_A 14 GTENLYFQSNALLSQRSAWFPRPVAAPAAEPPDPAAAPLRLVCFPYAGGTVS-------AFRGWQERLGD-EVAVVPVQL 85 (280)
T ss_dssp --------------CHHHHSCCCCCCCCCCCCCTTTCSEEEEEECCTTCCGG-------GGTTHHHHHCT-TEEEEECCC
T ss_pred CcceeeeecchhhhhcchheecCCCCCcccccccCCCCceEEEECCCCCChH-------HHHHHHHhcCC-CceEEEEeC
Confidence 45667787766522 222333222110 00122388999999776543 23445777776 999999999
Q ss_pred CCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeE----EEEEcCCc
Q 008873 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQ----CAVSGAPV 446 (550)
Q Consensus 371 rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~----~~v~~~~~ 446 (550)
||+|.+.... ....+.++.+.+..+.+.-. ..+++.|+||||||.+++.++.++|+++. .+++.+..
T Consensus 86 ~G~G~S~~~~--------~~~~~~~~a~~~~~~l~~~~-~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~ 156 (280)
T 3qmv_A 86 PGRGLRLRER--------PYDTMEPLAEAVADALEEHR-LTHDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSR 156 (280)
T ss_dssp TTSGGGTTSC--------CCCSHHHHHHHHHHHHHHTT-CSSSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCC
T ss_pred CCCCCCCCCC--------CCCCHHHHHHHHHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCC
Confidence 9998764321 12234444444433333211 34689999999999999999998776554 44444322
Q ss_pred CC-ccc---c----cchhh---hhccCCCCC---CccccccCC-------------hhhhhhcCCCcEEEEecCCCCCCC
Q 008873 447 TS-WDG---Y----DTFYT---EKYMGLPSE---DPVGYEYSS-------------VMHHVHKMKGKLLLVHGMIDENVH 499 (550)
Q Consensus 447 ~~-~~~---~----~~~~~---~~~~g~~~~---~~~~~~~~~-------------~~~~~~~i~~P~lii~G~~D~~v~ 499 (550)
.. ... . ...+. ..+.+.+.. +.+...... ......++++|+|+++|++|..++
T Consensus 157 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~G~~D~~~~ 236 (280)
T 3qmv_A 157 APHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRRLPVLRADLRACERYDWHPRPPLDCPTTAFSAAADPIAT 236 (280)
T ss_dssp CGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCTTHHHHHHHHHHHHTCCCCCCCCBCSCEEEEEEEECSSSC
T ss_pred CCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHHHHHHHHHHHHHHHhccccCCCceecCeEEEEecCCCCcC
Confidence 11 100 0 00000 011111111 000000000 001135678999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC-CCcHHHHHHHHHHH
Q 008873 500 FRHTARLINALVAARKPYEILIFPDERHMPRR-HRDRIYMEERIWEF 545 (550)
Q Consensus 500 ~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~-~~~~~~~~~~~~~f 545 (550)
+.....+.+.+ ....++.++++ +|.+.. .++...+.+.+.+|
T Consensus 237 ~~~~~~~~~~~---~~~~~~~~~~g-gH~~~~~~~~~~~~~~~i~~~ 279 (280)
T 3qmv_A 237 PEMVEAWRPYT---TGSFLRRHLPG-NHFFLNGGPSRDRLLAHLGTE 279 (280)
T ss_dssp HHHHHTTGGGB---SSCEEEEEEEE-ETTGGGSSHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhc---CCceEEEEecC-CCeEEcCchhHHHHHHHHHhh
Confidence 88776665433 34567788875 897633 24444455555444
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-15 Score=145.40 Aligned_cols=220 Identities=11% Similarity=-0.032 Sum_probs=143.0
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
...+.|||||++|||+...+.. ..|+++|+++++.++++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~---------------------------------~~l~~~d~~~~~~~~l~~~------ 78 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGN---------------------------------RNYYLLNLETQQAVQLTEG------ 78 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSS---------------------------------CEEEEEETTTTEEEECCCS------
T ss_pred eecCcCCCCCCEEEEEEecCCC---------------------------------ceEEEEECCCCcEEEeecC------
Confidence 4567899999999998654211 3679999999988776432
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCC---------CccCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKG---------VTKYS 154 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 154 (550)
.......+.|||||+.|++...+. +||++++++|+.++++.... .|...+..+.+.... ..+++
T Consensus 79 --~~~~~~~~~~spdg~~l~~~~~~~----~l~~~d~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~~~~~~~~~~~sp 151 (396)
T 3c5m_A 79 --KGDNTFGGFISTDERAFFYVKNEL----NLMKVDLETLEEQVIYTVDE-EWKGYGTWVANSDCTKLVGIEILKRDWQP 151 (396)
T ss_dssp --SCBCTTTCEECTTSSEEEEEETTT----EEEEEETTTCCEEEEEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred --CCCccccceECCCCCEEEEEEcCC----cEEEEECCCCCcEEEEeccc-ccCCCCCEEEeccCCccccccccccccCC
Confidence 111122368999999999887654 59999999999988886433 365443222221100 12333
Q ss_pred Cc--EEEEE--ccCCccEEEEEeCCCceeecccccCeEEEEEEeEee-cCCEEEEEEcCCC-CceeEEEEEEeCCCCCCC
Q 008873 155 GG--FIWAS--EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE-ASGQVYFTGTLDG-PLESHLYCAKLYPDWNHT 228 (550)
Q Consensus 155 ~~--~~~~s--~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~-dg~~l~f~~~~~~-~~~~~l~~v~~~~~g~~~ 228 (550)
++ +++.. ...+..+||++++++++.+.++.+...+..+ .|+| ||+.|+|.+.... .....||.+++ ++.
T Consensus 152 dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~-~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~--~~~-- 226 (396)
T 3c5m_A 152 LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHP-IYRPFDDSTVGFCHEGPHDLVDARMWLVNE--DGS-- 226 (396)
T ss_dssp CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEE-EEETTEEEEEEEEECSCSSSCSCCCEEEET--TSC--
T ss_pred CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccc-eECCCCCCEEEEEecCCCCCCCceEEEEEC--CCC--
Confidence 33 22221 1134578999999988888888665445555 4999 8888999876221 11257888888 443
Q ss_pred CCCCeeeCCCC-c--eEEEEECCCCCEEEEeecCCCCC-CEEEEEEcCCCce
Q 008873 229 LEAPVKLTNGK-G--KHVAVLDHNMRNFVDFHDSLDSP-PRILLCSLQDGSL 276 (550)
Q Consensus 229 ~~~~~~lt~~~-~--~~~~~~s~dg~~l~~~~s~~~~p-~~l~~~~~~~g~~ 276 (550)
..+.++... + ...+.|||||++|++........ ..|+++++.+++.
T Consensus 227 --~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 227 --NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp --CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred --ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 455666532 2 45568999999988875543322 2399999877763
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-14 Score=135.76 Aligned_cols=198 Identities=16% Similarity=0.108 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCCCCchhhHH-HHhhccCCCchHHHHHHHHHHHHc
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTARRGLKFEA-SIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~-~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
|+||++||++.+.. .|......|++ .+|.|+++|+||+|.+...... .....+ .+|+.+.++.+...
T Consensus 39 p~lvllHG~~~~~~-------~w~~~~~~L~~~~~~~via~Dl~GhG~S~~~~~~~~~~~~~----a~dl~~~l~~l~~~ 107 (316)
T 3c5v_A 39 PVLLLLHGGGHSAL-------SWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETM----AKDVGNVVEAMYGD 107 (316)
T ss_dssp CEEEEECCTTCCGG-------GGHHHHHHHHTTBCCEEEEECCTTSTTCBCSCTTCCCHHHH----HHHHHHHHHHHHTT
T ss_pred cEEEEECCCCcccc-------cHHHHHHHHhhcCCeEEEEecCCCCCCCCCCCccccCHHHH----HHHHHHHHHHHhcc
Confidence 78899999765532 34445677776 3899999999999987532100 000111 45666666666321
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCcCCc----------------ccccch---h---------
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTSW----------------DGYDTF---Y--------- 456 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~~~~----------------~~~~~~---~--------- 456 (550)
+ .+++.|+||||||.+++.+|.+ +|+ ++++|+.++.... ..+... .
T Consensus 108 --~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (316)
T 3c5v_A 108 --L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQI 183 (316)
T ss_dssp --C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCCHHHHHHHHHHHHHHHHHSCSCBSSHHHHHHHHHHTTSC
T ss_pred --C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcccccchhhhHHHHHHHHhhCccccccHHHHHHHhhhcccc
Confidence 1 2589999999999999999985 577 8888887653110 000000 0
Q ss_pred ----------hhhccCCC--C---C--Ccccc-ccCCh--------------hhhhhcCCCcEEEEecCCCCCCChHHHH
Q 008873 457 ----------TEKYMGLP--S---E--DPVGY-EYSSV--------------MHHVHKMKGKLLLVHGMIDENVHFRHTA 504 (550)
Q Consensus 457 ----------~~~~~g~~--~---~--~~~~~-~~~~~--------------~~~~~~i~~P~lii~G~~D~~v~~~~~~ 504 (550)
........ . . ....+ ..... ...+.++++|+|+++|+.|...+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lli~g~~D~~~~~~~-- 261 (316)
T 3c5v_A 184 RNLESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLT-- 261 (316)
T ss_dssp CCHHHHHHHHHHHEEECC------------CEEESCCGGGGHHHHHHHHTTHHHHHHHSSSCEEEEESSCCCCCHHHH--
T ss_pred cchhhhhhhhhHHhhhccccccccccccccceeeeecccchhhhhhhhhhhhHHHhhcCCCCEEEEEecccccccHHH--
Confidence 00000000 0 0 00000 00000 11234688999999999997643221
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 505 RLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
...+ ....++.++|++||.+ ..+..+.+.+.+.+||.+.
T Consensus 262 --~~~~---~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 300 (316)
T 3c5v_A 262 --IGQM---QGKFQMQVLPQCGHAV-HEDAPDKVAEAVATFLIRH 300 (316)
T ss_dssp --HHHH---TTCSEEEECCCCSSCH-HHHSHHHHHHHHHHHHHHT
T ss_pred --HHhh---CCceeEEEcCCCCCcc-cccCHHHHHHHHHHHHHhc
Confidence 1122 2357899999999987 4456778899999999753
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-14 Score=135.94 Aligned_cols=222 Identities=12% Similarity=0.093 Sum_probs=127.5
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+...+.. +|..+++.... ..|.||++||.+.+.. .| ......| +.+|.|+++|+||+|.+..
T Consensus 6 ~~~~~~~-~~~~~~~~~~g---------~g~~~vllHG~~~~~~---~w----~~~~~~l-~~~~~vi~~Dl~G~G~s~~ 67 (291)
T 3qyj_A 6 EQTIVDT-TEARINLVKAG---------HGAPLLLLHGYPQTHV---MW----HKIAPLL-ANNFTVVATDLRGYGDSSR 67 (291)
T ss_dssp EEEEEEC-SSCEEEEEEEC---------CSSEEEEECCTTCCGG---GG----TTTHHHH-TTTSEEEEECCTTSTTSCC
T ss_pred ceeEEec-CCeEEEEEEcC---------CCCeEEEECCCCCCHH---HH----HHHHHHH-hCCCEEEEEcCCCCCCCCC
Confidence 4444444 67778776542 1256888999877643 23 3345556 4589999999999998754
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc---c--
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---D-- 453 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~---~-- 453 (550)
..... .......+++.+.+..+.+.- ..+++.++||||||.+++.++.++|++++++++.++......+ .
T Consensus 68 ~~~~~---~~~~~~~~~~~~~~~~~~~~l--~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~ 142 (291)
T 3qyj_A 68 PASVP---HHINYSKRVMAQDQVEVMSKL--GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPTHKMYRTTDQE 142 (291)
T ss_dssp CCCCG---GGGGGSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCHHHHHHTCCHH
T ss_pred CCCCc---cccccCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCCCcchhhhcchhh
Confidence 21100 000112333333333333321 2357999999999999999999999999999987643210000 0
Q ss_pred ------------------c--------hhhhhcc---CCC--CCCcc---c-----------------cccCC-------
Q 008873 454 ------------------T--------FYTEKYM---GLP--SEDPV---G-----------------YEYSS------- 475 (550)
Q Consensus 454 ------------------~--------~~~~~~~---g~~--~~~~~---~-----------------~~~~~------- 475 (550)
. .+....+ ... ...++ . |....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (291)
T 3qyj_A 143 FATAYYHWFFLIQPDNLPETLIGANPEYYLRKCLEKWGKDFSAFHPQALAEYIRCFSQPAVIHATCEDYRAAATIDLEHD 222 (291)
T ss_dssp HHHHTTHHHHTTCSTTHHHHHHHTCHHHHHHHHHHHHCSCGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHhccCCCchHHHHcCCHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhcCCCcchhHHHHHHcccccchhhc
Confidence 0 0000000 000 00000 0 00000
Q ss_pred hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 476 VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 476 ~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
......++++|+|+++|++|...+.... .+...+...+++..+++ +||.+ ..++...+.+.+.+||..
T Consensus 223 ~~~~~~~i~~P~Lvi~G~~D~~~~~~~~---~~~~~~~~~~~~~~~~~-~GH~~-~~E~P~~v~~~i~~fL~~ 290 (291)
T 3qyj_A 223 ELDMKQKISCPVLVLWGEKGIIGRKYDV---LATWRERAIDVSGQSLP-CGHFL-PEEAPEETYQAIYNFLTH 290 (291)
T ss_dssp HTTTTCCBCSCEEEEEETTSSHHHHSCH---HHHHHTTBSSEEEEEES-SSSCH-HHHSHHHHHHHHHHHHHC
T ss_pred chhcCCccccceEEEecccccccchhhH---HHHHHhhcCCcceeecc-CCCCc-hhhCHHHHHHHHHHHHhc
Confidence 0012356889999999999965332111 12222333567777776 89976 567888999999999974
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=136.46 Aligned_cols=244 Identities=14% Similarity=0.081 Sum_probs=144.3
Q ss_pred CCeEEEEEcC-CCcEEEEEEEcCCCCCC----CCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCC
Q 008873 297 PPDIVQIQAN-DGTVLYGALYKPDESRY----GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR 371 (550)
Q Consensus 297 ~~~~~~~~~~-~g~~l~~~~~~P~~~~~----~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~r 371 (550)
+...+++.+. -|.++...+|+|++... ..+++|||+++||.++... .|... ....+.+++.|.+++++|-.
T Consensus 13 ~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~---~w~~~-~~~~~~~~~~~~~~v~p~~~ 88 (299)
T 4fol_A 13 RLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPD---NASEK-AFWQFQADKYGFAIVFPDTS 88 (299)
T ss_dssp EEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCHH---HHHHH-SCHHHHHHHHTCEEEEECSS
T ss_pred EEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChH---HHHHh-chHhHHHHHcCchhhccCCC
Confidence 3455666664 57889999999987531 2368999999999766532 33211 11245667789999999742
Q ss_pred CCC-----------C--Cchhh-HHH----H--hhccCCCchHHHHHHHHHHHH----cCCCCCCceEEEEechhHHHHH
Q 008873 372 GTA-----------R--RGLKF-EAS----I--KHNCGRIDAEDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSA 427 (550)
Q Consensus 372 G~g-----------~--~~~~~-~~~----~--~~~~~~~~~~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~~a~ 427 (550)
-.+ . .+..+ ..+ . ...+...-.+|+...++.--. +...+.++.+|.|+||||+.|+
T Consensus 89 p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl 168 (299)
T 4fol_A 89 PRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAI 168 (299)
T ss_dssp CCSTTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHH
T ss_pred cceeecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHH
Confidence 110 0 00000 000 0 001101112333333332111 1123457899999999999999
Q ss_pred HHHhhC--CCeeEEEEEcCCcCCcccccch--hhhhccCCCCCCccccccCChhhhhhcCC----CcEEEEecCCCCCCC
Q 008873 428 ITLARF--PDVFQCAVSGAPVTSWDGYDTF--YTEKYMGLPSEDPVGYEYSSVMHHVHKMK----GKLLLVHGMIDENVH 499 (550)
Q Consensus 428 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~i~----~P~lii~G~~D~~v~ 499 (550)
.++.++ |.+|.++.+.+|..+....... ....+++... ..+...++...+++.+ .+++|-+|+.|....
T Consensus 169 ~~al~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~g~~~---~~~~~~d~~~l~~~~~~~~~~~i~id~G~~D~f~~ 245 (299)
T 4fol_A 169 CGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEK---AQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLE 245 (299)
T ss_dssp HHHHHTGGGTCCSEEEEESCCCCGGGSHHHHHHHHHHTC--------CGGGCHHHHGGGSCCCTTCCEEEEEETTCTTHH
T ss_pred HHHHhCCCCCceEEEEecccccCcccccccccccccccccch---hhhhhcCHHHHHHhcccCCCCceEEEecCCCcchh
Confidence 999985 6789999999998775432211 1123344332 3344555555444432 579999999997653
Q ss_pred hH-HHHHHHHHHHHcCCC--eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 500 FR-HTARLINALVAARKP--YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 500 ~~-~~~~~~~~l~~~~~~--~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.+ ....+.+++++++.+ +++...||.+|.+.. ...+++.-++|..++|
T Consensus 246 ~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~f---~~~fi~dhl~fha~~L 296 (299)
T 4fol_A 246 EHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNL 296 (299)
T ss_dssp HHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHT
T ss_pred hhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH---HHHHHHHHHHHHHHhc
Confidence 22 236788888888865 788889998998633 3445666778887775
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=137.02 Aligned_cols=190 Identities=11% Similarity=0.064 Sum_probs=126.7
Q ss_pred CCeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECC-CCeEEEEEEecCCC--ceEEEEEECCCCceEEEEEee
Q 008873 56 NVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQT--KLKVLKFDIKTGQRKVILVEE 132 (550)
Q Consensus 56 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wsp-Dg~~i~~~~~r~~~--~~~l~~~~~~~g~~~~l~~~~ 132 (550)
+....|+++|+++++.+.+... ...+..+.||| ||+.|++..+.... ..+||++++++++.+.|+..
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~~~---------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~- 234 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIHQD---------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH- 234 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEEEE---------SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC-
T ss_pred CCcceEEEEECCCCcEEeeccC---------CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc-
Confidence 3457899999999988776421 33567789999 89888887653221 15799999999887776542
Q ss_pred cCceeeccCccccCCCCCccCCCc--EEEEEccCCccE--EEEEeCCCceeecccccCeEEEEEEeEee-cCCEEEEEEc
Q 008873 133 LDSWVNLHDCFTPLDKGVTKYSGG--FIWASEKTGFRH--LYLHDINGTCLGPITEGDWMVEQIVGVNE-ASGQVYFTGT 207 (550)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~--l~~~~~~~~~~~~lT~~~~~~~~~~~~s~-dg~~l~f~~~ 207 (550)
...+..... .|++++ +++.+...+..+ ||++++++++.+.++..... . ..|++ ||+.+++...
T Consensus 235 ~~~~~~~~~---------~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~--~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 235 AEGESCTHE---------FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPC-S--HLMSNFDGSLMVGDGC 302 (396)
T ss_dssp CTTEEEEEE---------EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSE-E--EEEECSSSSEEEEEEC
T ss_pred CCCccccce---------EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCC-C--CCccCCCCceEEEecC
Confidence 112211111 244444 777777766655 99999988887777754321 2 45999 9997776543
Q ss_pred CCC------------CceeEEEEEEeCCCCCCCCCCCeeeCCCCc------------eEEEEECCCCCEEEEeecCCCCC
Q 008873 208 LDG------------PLESHLYCAKLYPDWNHTLEAPVKLTNGKG------------KHVAVLDHNMRNFVDFHDSLDSP 263 (550)
Q Consensus 208 ~~~------------~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~------------~~~~~~s~dg~~l~~~~s~~~~p 263 (550)
. . .....||.+++ .++ +.++|+.... ...+.|||||+.|++.... ...
T Consensus 303 ~-~p~~~~~~~~~~~~~~~~i~~~d~--~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-~~~ 374 (396)
T 3c5m_A 303 D-APVDVADADSYNIENDPFLYVLNT--KAK----SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-EGV 374 (396)
T ss_dssp C-C----------CCCCCCEEEEEET--TTT----BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT-TSS
T ss_pred C-cceeeccccccccCCCCcEEEEec--ccC----ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecC-CCC
Confidence 2 1 12368999998 333 3445554332 3446899999999888665 356
Q ss_pred CEEEEEEcCCCc
Q 008873 264 PRILLCSLQDGS 275 (550)
Q Consensus 264 ~~l~~~~~~~g~ 275 (550)
++||++++.++.
T Consensus 375 ~~l~~~~~~~~~ 386 (396)
T 3c5m_A 375 PAIYIADVPESY 386 (396)
T ss_dssp CEEEEEECCTTC
T ss_pred ceEEEEEEcccc
Confidence 799999987665
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-12 Score=127.89 Aligned_cols=197 Identities=12% Similarity=0.047 Sum_probs=131.4
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
...+.|||||++|||++.+... ...+||++|+++++.++++..
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~-------------------------------~~~~l~~~~~~~g~~~~l~~~------ 103 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEK-------------------------------KVSEIWVADLETLSSKKILEA------ 103 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTT-------------------------------TEEEEEEEETTTTEEEEEEEE------
T ss_pred CCCeEECCCCCEEEEEEeccCC-------------------------------CcceEEEEECCCCceEEEEcC------
Confidence 3568899999999998765311 135799999999988877542
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecC-----------------------CCceEEEEEECCCCce-EEEEEeecCceeec
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRS-----------------------QTKLKVLKFDIKTGQR-KVILVEELDSWVNL 139 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~-----------------------~~~~~l~~~~~~~g~~-~~l~~~~~~~~~~~ 139 (550)
.. +..+.|||||+.|++...+. ....+||++++++|+. +.|+. . ...
T Consensus 104 ---~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~--- 174 (347)
T 2gop_A 104 ---KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFS--- 174 (347)
T ss_dssp ---SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTC---
T ss_pred ---CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Ccc---
Confidence 22 78899999999888886431 1146799999999998 77765 2 211
Q ss_pred cCccccCCCCCccCCCcEEEEEccCC-------ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCC--
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTG-------FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG-- 210 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g-------~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~-- 210 (550)
.+ .|++|++++.+...+ ..+||.++ +++.++|+.+ ..+. .+||||+.|+|.+....
T Consensus 175 ----~~-----~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~---~~spdg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 175 ----SG-----IWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFY---AVDSDGERILLYGKPEKKY 239 (347)
T ss_dssp ----EE-----EEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEE---EEEECSSCEEEEECCSSSC
T ss_pred ----cc-----cCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC-ccee---eECCCCCEEEEEEccccCC
Confidence 11 356777666654432 56899999 6678888875 3222 24999999999987542
Q ss_pred -CceeEEEEEEeCCCCCCCCCCCeeeCCC-Cc-eEE-EEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 211 -PLESHLYCAKLYPDWNHTLEAPVKLTNG-KG-KHV-AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 211 -~~~~~l~~v~~~~~g~~~~~~~~~lt~~-~~-~~~-~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
.....||.++ ++ +.++++.. .. ... +.|+ |+ ++++.+... ...|| ++ +|+.
T Consensus 240 ~~~~~~l~~~d---~~-----~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~-~~~l~-~~--~g~~ 294 (347)
T 2gop_A 240 MSEHNKLYIYD---GK-----EVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEG-SVNLY-IW--DGEI 294 (347)
T ss_dssp CCSSCEEEEEC---SS-----CEEESSTTCCSEEEEEEEET-TE--EEEEEEETT-EEEEE-EE--SSSE
T ss_pred ccccceEEEEC---CC-----ceEeccccCCcccCCccEEc-Cc--EEEEEecCC-cEEEE-Ec--CCce
Confidence 1236788776 22 44566654 22 444 6788 87 555544332 34777 77 4553
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=149.04 Aligned_cols=216 Identities=9% Similarity=-0.014 Sum_probs=140.8
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCC--
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGT-- 81 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~-- 81 (550)
...+.|||||++|||+...++. +....|+++|+++++.+++.......
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~------------------------------~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 88 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSD------------------------------RNQLDLWSYDIGSGQTRLLVDSKVVLPG 88 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSC------------------------------TTEEEEEEEETTTCCEEEEECGGGTC--
T ss_pred CCCceEecCCCEEEEEeccCCC------------------------------CcccEEEEEECCCCceeEccchhhcccc
Confidence 4678999999999998763221 12357899999999887664321100
Q ss_pred --CCCC------------CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC---ceEEEEEeecCceeeccCccc
Q 008873 82 --DQNY------------DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG---QRKVILVEELDSWVNLHDCFT 144 (550)
Q Consensus 82 --~~~~------------~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g---~~~~l~~~~~~~~~~~~~~~~ 144 (550)
.+.. ....+..++|||||+.|++... ..|++++++++ +.++++....... .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-----~~i~~~d~~~~~~~~~~~l~~~~~~~~-------~ 156 (741)
T 2ecf_A 89 TETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-----GELYLYDLKQEGKAAVRQLTHGEGFAT-------D 156 (741)
T ss_dssp ------------------CCEESCCCEECTTSSEEEEEET-----TEEEEEESSSCSTTSCCBCCCSSSCEE-------E
T ss_pred cccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-----CcEEEEECCCCCcceEEEcccCCcccc-------c
Confidence 0000 0023567899999999998875 46999999999 7766654322110 0
Q ss_pred cCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeE-----------------EEEEEeEeecCCEEEEE
Q 008873 145 PLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWM-----------------VEQIVGVNEASGQVYFT 205 (550)
Q Consensus 145 ~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~-----------------~~~~~~~s~dg~~l~f~ 205 (550)
+ .|+||+ +++.+++ +||++++++++.+++|..... +.. ..|||||++|++.
T Consensus 157 ~-----~~SPDG~~la~~~~~----~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~-~~~SpDg~~l~~~ 226 (741)
T 2ecf_A 157 A-----KLSPKGGFVSFIRGR----NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTG-YWWAPDDSAIAYA 226 (741)
T ss_dssp E-----EECTTSSEEEEEETT----EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCS-EEECTTSSCEEEE
T ss_pred c-----cCCCCCCEEEEEeCC----cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccc-eEECCCCCEEEEE
Confidence 1 345555 6666642 899999999888888764211 122 3599999999998
Q ss_pred EcCCCC----------------------------ceeEEEEEEeCCCC-CCCCCCCeeeCCC----CceEEEEECCCCCE
Q 008873 206 GTLDGP----------------------------LESHLYCAKLYPDW-NHTLEAPVKLTNG----KGKHVAVLDHNMRN 252 (550)
Q Consensus 206 ~~~~~~----------------------------~~~~l~~v~~~~~g-~~~~~~~~~lt~~----~~~~~~~~s~dg~~ 252 (550)
+...+. ....|+.+++ .+ . +.+.+... .....+.| |||++
T Consensus 227 ~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~--~~~~----~~~~~~~~~~~~~~~~~~~~-pDg~~ 299 (741)
T 2ecf_A 227 RIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP--AEQA----QTQWIDLGKEQDIYLARVNW-RDPQH 299 (741)
T ss_dssp EEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS--STTC----CCEEECCCSCSSEEEEEEEE-EETTE
T ss_pred EEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC--CCCC----ceEEecCCCCcceEEEEEEe-CCCCE
Confidence 754311 1237888887 33 3 34455432 12456789 99999
Q ss_pred EEEeecC-CCCCCEEEEEEcCCCceeE
Q 008873 253 FVDFHDS-LDSPPRILLCSLQDGSLVL 278 (550)
Q Consensus 253 l~~~~s~-~~~p~~l~~~~~~~g~~~~ 278 (550)
|++...+ ......|+++++.+++...
T Consensus 300 l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 300 LSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp EEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred EEEEEecccCCeEEEEEEECCCCceEE
Confidence 9988763 3344689999998887543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-13 Score=142.29 Aligned_cols=202 Identities=11% Similarity=0.057 Sum_probs=132.7
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.+||||++|||+...++. .+||. +++++.++++..
T Consensus 25 ~~~~~~~DG~~la~~s~~~g~---------------------------------~~lw~--~~~g~~~~lt~~------- 62 (582)
T 3o4h_A 25 YSLQGVVDGDKLLVVGFSEGS---------------------------------VNAYL--YDGGETVKLNRE------- 62 (582)
T ss_dssp EEEEEEETTTEEEEEEEETTE---------------------------------EEEEE--EETTEEEECCSS-------
T ss_pred heeecCCCCCeEEEEEccCCc---------------------------------eeEEE--EcCCCcEeeecc-------
Confidence 467799999999998764321 34554 678888777431
Q ss_pred CCCceeEEEEECCCCeEEEEEEec--CCCceEEEEEEC--CCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNR--SQTKLKVLKFDI--KTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWA 160 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r--~~~~~~l~~~~~--~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (550)
....+..++|||| + ++++..+ ......||.++. +++.. +++....... ..+ +.++++++++
T Consensus 63 -~~~~~~~~~~spd-~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~----~~~-------s~dg~~~~~~ 127 (582)
T 3o4h_A 63 -PINSVLDPHYGVG-R-VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRI----LSG-------VDTGEAVVFT 127 (582)
T ss_dssp -CCSEECEECTTCS-E-EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEE----EEE-------EECSSCEEEE
T ss_pred -cccccccccCCCC-e-EEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCcee----eee-------CCCCCeEEEE
Confidence 1246778999999 5 5555554 334568999999 65544 4433221111 011 1245567777
Q ss_pred EccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc
Q 008873 161 SEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG 240 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~ 240 (550)
+...+... ++++++++.++|+.+.. ..+ .|||||+.|++.+...+. ...||.+++ .++ +.++|+...+
T Consensus 128 s~~~~~~~--l~d~~~g~~~~l~~~~~--~~~-~~spDG~~la~~~~~~~~-~~~i~~~d~--~~g----~~~~l~~~~~ 195 (582)
T 3o4h_A 128 GATEDRVA--LYALDGGGLRELARLPG--FGF-VSDIRGDLIAGLGFFGGG-RVSLFTSNL--SSG----GLRVFDSGEG 195 (582)
T ss_dssp EECSSCEE--EEEEETTEEEEEEEESS--CEE-EEEEETTEEEEEEEEETT-EEEEEEEET--TTC----CCEEECCSSC
T ss_pred ecCCCCce--EEEccCCcEEEeecCCC--ceE-EECCCCCEEEEEEEcCCC-CeEEEEEcC--CCC----CceEeecCCC
Confidence 76554433 44777888888886543 334 499999999988875432 356999998 433 5677876544
Q ss_pred -eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 241 -KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 241 -~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
...+.|||||+.|+ . ++......|+++++.+++..
T Consensus 196 ~~~~~~~SpDG~~l~-~-~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 196 SFSSASISPGMKVTA-G-LETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEEEECTTSCEEE-E-EECSSCEEEEEECTTTCCEE
T ss_pred ccccceECCCCCEEE-E-ccCCCeeEEEEEcCCCCcEE
Confidence 56679999999988 3 33334458999999877743
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-13 Score=127.41 Aligned_cols=214 Identities=15% Similarity=0.137 Sum_probs=129.4
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC--------CCCCCCchhh
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--------RGTARRGLKF 380 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~--------rG~g~~~~~~ 380 (550)
..+...+++|.+.. ++.|+||.+||+.. ...+||+|+.+++ +|+.++|. |
T Consensus 90 ~~~~~~i~lP~~~~---~p~Pvii~i~~~~~------------------~~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f 147 (375)
T 3pic_A 90 ISFTVTITYPSSGT---APYPAIIGYGGGSL------------------PAPAGVAMINFNNDNIAAQVNTGSRGQGK-F 147 (375)
T ss_dssp EEEEEEEECCSSSC---SSEEEEEEETTCSS------------------CCCTTCEEEEECHHHHSCCSSGGGTTCSH-H
T ss_pred eEEEEEEECCCCCC---CCccEEEEECCCcc------------------ccCCCeEEEEecccccccccCCCCcccee-c
Confidence 56888999998642 68999999988411 1357999999986 55545554 3
Q ss_pred HHHH--hhccCCCch--HHHHHHHHHHHHcC--CCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC----cc
Q 008873 381 EASI--KHNCGRIDA--EDQLTGAEWLIKQG--LAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS----WD 450 (550)
Q Consensus 381 ~~~~--~~~~~~~~~--~D~~~~~~~l~~~~--~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~----~~ 450 (550)
.... ...+|.... -|+.++++||.+++ .||++||+|+|||+||..++++++.. ++|+++|+.++..+ ++
T Consensus 148 ~~ly~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~~G~~~~R 226 (375)
T 3pic_A 148 YDLYGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGAGGSACWR 226 (375)
T ss_dssp HHHHCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTTTTSCHH
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCCCchhhhh
Confidence 3211 112222222 48999999999998 99999999999999999999999976 47899999875432 11
Q ss_pred ccc--chhhhh------ccC-CCCCCcc--cccc------CChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHH--
Q 008873 451 GYD--TFYTEK------YMG-LPSEDPV--GYEY------SSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINAL-- 510 (550)
Q Consensus 451 ~~~--~~~~~~------~~g-~~~~~~~--~~~~------~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l-- 510 (550)
... ..+.+. ..+ ..|..+. .|.. .+-...+.-+. .|+|++.| .|..+++......+.++
T Consensus 227 ~~~~~~~~Ge~v~~~~~~~~e~~Wf~~~~~~y~~~~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~~~g~~~~~~~a~~ 305 (375)
T 3pic_A 227 ISDYLKSQGANIQTASEIIGEDPWFSTTFNSYVNQVPVLPFDHHSLAALIAPRGLFVIDN-NIDWLGPQSCFGCMTAAHM 305 (375)
T ss_dssp HHHHHHHTTCCCCCHHHHTTTCSCSCGGGGGTTTCGGGSSCCHHHHHHTSTTSEEEEECC-CCGGGCHHHHHHHHHHHHH
T ss_pred hhhhhcccCccccccccccCcccccccchhhhcccccccCcCHHHHHHHhCCceEEEecC-CCcccCcHHHHHHHHHHHH
Confidence 000 000000 001 1222111 1110 01112233333 58999999 99999987655444443
Q ss_pred --HHcCC--CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 511 --VAARK--PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 511 --~~~~~--~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+..|. ++.+.+..+.+|.....+. .+.+.+||+++|
T Consensus 306 VY~~lG~~d~~~~~~~ggH~Hc~fp~~~----~~~~~~F~~k~L 345 (375)
T 3pic_A 306 AWQALGVSDHMGYSQIGAHAHCAFPSNQ----QSQLTAFVQKFL 345 (375)
T ss_dssp HHHHTTCGGGEEEECCSCCSTTCCCGGG----HHHHHHHHHHHT
T ss_pred HHHHcCCccceEEEeeCCCccccCCHHH----HHHHHHHHHHHh
Confidence 34564 5566443333453222222 266778888876
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-15 Score=139.70 Aligned_cols=140 Identities=16% Similarity=0.085 Sum_probs=96.2
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeE-EEEEcCCcCCcccccchhhhhccCC--CCC-Cc----cccccCChhh
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQ-CAVSGAPVTSWDGYDTFYTEKYMGL--PSE-DP----VGYEYSSVMH 478 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~g~--~~~-~~----~~~~~~~~~~ 478 (550)
..+|++||+|+|+|+||++++.++..+|++|+ ++++.++.......... ....+.. +.. .. +.+.. +++.
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 83 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQY-YTSCMYNGYPSITTPTANMKSWSG-NQIA 83 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSC-GGGGSTTCCCCCHHHHHHHHHHBT-TTBC
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchHH-HHHHhhccCCCCCCHHHHHHHhhc-ccCC
Confidence 45899999999999999999999999999998 87776653221111000 1111111 100 00 11111 3444
Q ss_pred hhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCC--CeEEEEcCCCCCcCCCCCc------------------HHH
Q 008873 479 HVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMPRRHRD------------------RIY 537 (550)
Q Consensus 479 ~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~p~~~H~~~~~~~------------------~~~ 537 (550)
.+.+++ .|+||+||++|.+||++++.+++++|++.+. +++++++++++|.+..... ..+
T Consensus 84 ~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~~~~~d 163 (318)
T 2d81_A 84 SVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYD 163 (318)
T ss_dssp CGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSC
T ss_pred hhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCCCcccCCCCh
Confidence 455554 5999999999999999999999999988873 7899999999999732221 245
Q ss_pred HHHHHHHHHHH
Q 008873 538 MEERIWEFIER 548 (550)
Q Consensus 538 ~~~~~~~fl~~ 548 (550)
....|++||..
T Consensus 164 ~~~~i~~ff~g 174 (318)
T 2d81_A 164 GAGAALKWIYG 174 (318)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhc
Confidence 66788899854
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=123.82 Aligned_cols=194 Identities=14% Similarity=0.105 Sum_probs=133.3
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+.|||||++|++...+... ...||++++++++.+.+...
T Consensus 88 ~~~~~spdg~~l~~~~~~~~~--------------------------------~~~l~~~~~~~~~~~~~~~~------- 128 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVEFG--------------------------------KSAIYLLPSTGGTPRLMTKN------- 128 (297)
T ss_dssp SCCEECTTSSEEEEEECTTTS--------------------------------SCEEEEEETTCCCCEECCSS-------
T ss_pred cceEECCCCCEEEEEEeCCCC--------------------------------cceEEEEECCCCceEEeecC-------
Confidence 568899999999998643211 24789999999887766331
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~ 162 (550)
. ....++|||||+.+++..... ....||.++.++++.+.+...... .. .. .|++++ +++.+.
T Consensus 129 --~-~~~~~~~spdg~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~--~~-----~~-----~~s~dg~~l~~~~~ 192 (297)
T 2ojh_A 129 --L-PSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGVETRLTHGEGR--ND-----GP-----DYSPDGRWIYFNSS 192 (297)
T ss_dssp --S-SEEEEEECTTSSEEEEEEEET-TEEEEEEEETTTCCEEECCCSSSC--EE-----EE-----EECTTSSEEEEEEC
T ss_pred --C-CccceEECCCCCEEEEEECCC-CceEEEEEECCCCcceEcccCCCc--cc-----cc-----eECCCCCEEEEEec
Confidence 1 256789999999888766544 346799999999887766543221 10 01 244544 555666
Q ss_pred cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCC------ceeEEEEEEeCCCCCCCCCCCeeeC
Q 008873 163 KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGP------LESHLYCAKLYPDWNHTLEAPVKLT 236 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~------~~~~l~~v~~~~~g~~~~~~~~~lt 236 (550)
.++..+||.++.++++.+.++.+...+..+ .|+|||+.|++.+..... ....|+.+++ .+. +.+.+.
T Consensus 193 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~--~~~----~~~~~~ 265 (297)
T 2ojh_A 193 RTGQMQIWRVRVDGSSVERITDSAYGDWFP-HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM--DGG----NVETLF 265 (297)
T ss_dssp TTSSCEEEEEETTSSCEEECCCCSEEEEEE-EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET--TSC----SCEEEE
T ss_pred CCCCccEEEECCCCCCcEEEecCCcccCCe-EECCCCCEEEEEEcCCCCCcccccCceEEEEEec--CCC----Cceeee
Confidence 678889999998888888888776655555 499999999998875321 2467999998 333 233333
Q ss_pred C----CCceEEEEECCCCCEEEEeecCC
Q 008873 237 N----GKGKHVAVLDHNMRNFVDFHDSL 260 (550)
Q Consensus 237 ~----~~~~~~~~~s~dg~~l~~~~s~~ 260 (550)
. ......+.|+|||++|++.....
T Consensus 266 ~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 266 DLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccCCCCcccccceECCCCCEEEEEEecc
Confidence 1 12345568999999998876553
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-13 Score=145.92 Aligned_cols=221 Identities=11% Similarity=0.009 Sum_probs=135.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
...+.|||||++|||...+.... . ......|+++|+++++.++++..
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~-~--------------------------~~~~~~i~~~d~~~~~~~~l~~~------ 109 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIY-Q--------------------------HSYTGYYVLSKIPHGDPQSLDPP------ 109 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCS-S--------------------------SCCCSEEEEEESSSCCCEECCCT------
T ss_pred cceEEECCCCCEEEEEecCccce-e--------------------------ecceeeEEEEECCCCceEeccCC------
Confidence 46789999999999986542210 0 00124689999999988766432
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCce-eeccCc-------cccCCCCCccCCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW-VNLHDC-------FTPLDKGVTKYSG 155 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~ 155 (550)
......+..++|||||+.|++..++ +||++++++|+.++++....... .+..+. +.. .....|+||
T Consensus 110 ~~~~~~~~~~~~SPdG~~la~~~~~-----~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~-~~~~~~SpD 183 (723)
T 1xfd_A 110 EVSNAKLQYAGWGPKGQQLIFIFEN-----NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT-HIAHWWSPD 183 (723)
T ss_dssp TCCSCCCSBCCBCSSTTCEEEEETT-----EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS-SEEEEECTT
T ss_pred ccccccccccEECCCCCEEEEEECC-----eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC-cceEEECCC
Confidence 1112235668999999999998752 59999999999988876422110 000000 000 001145666
Q ss_pred c--EEEEEccC---------------------------C----ccEEEEEeCCCce-eeccccc------CeEEEEEEeE
Q 008873 156 G--FIWASEKT---------------------------G----FRHLYLHDINGTC-LGPITEG------DWMVEQIVGV 195 (550)
Q Consensus 156 ~--~~~~s~~~---------------------------g----~~~l~~~~~~~~~-~~~lT~~------~~~~~~~~~~ 195 (550)
+ +++.+... | ..+|+++++++++ .++|+.+ ...+..+ .|
T Consensus 184 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 262 (723)
T 1xfd_A 184 GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV-KW 262 (723)
T ss_dssp SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE-EE
T ss_pred CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEE-EE
Confidence 5 55655332 1 2389999998876 3667653 4455555 49
Q ss_pred eecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC--CCce-----EEEEECCCCCEEEEeecCCCC----CC
Q 008873 196 NEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN--GKGK-----HVAVLDHNMRNFVDFHDSLDS----PP 264 (550)
Q Consensus 196 s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~--~~~~-----~~~~~s~dg~~l~~~~s~~~~----p~ 264 (550)
||||+.|++..++.. ....|+.+++ .++ +.+++.. ..+. ..+.|||||+.|++..+.... -.
T Consensus 263 SpDg~~l~~~~~~~~-~~~~i~~~d~--~~g----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 263 ATSTKVAVTWLNRAQ-NVSILTLCDA--TTG----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp SSSSEEEEEEEETTS-CEEEEEEEET--TTC----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eCCCeEEEEEEcCCC-CeEEEEEEeC--CCC----cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 999997766666532 3578888898 332 3333321 1121 256899999999887443322 23
Q ss_pred EEEEEEc
Q 008873 265 RILLCSL 271 (550)
Q Consensus 265 ~l~~~~~ 271 (550)
.|++++.
T Consensus 336 ~l~~~d~ 342 (723)
T 1xfd_A 336 HITVSSS 342 (723)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 7888883
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-12 Score=123.57 Aligned_cols=213 Identities=15% Similarity=0.097 Sum_probs=128.3
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC--------CCCCCCchhh
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN--------RGTARRGLKF 380 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~--------rG~g~~~~~~ 380 (550)
..+.+.+++|.+. ++.|+||.+||+. + ...+||+++.+|+ +|+.++|. |
T Consensus 123 ~sf~~~i~lP~g~----~P~Pvii~~~~~~--------~----------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f 179 (433)
T 4g4g_A 123 ISFSASIRKPSGA----GPFPAIIGIGGAS--------I----------PIPSNVATITFNNDEFGAQMGSGSRGQGK-F 179 (433)
T ss_dssp EEEEEEEECCSSS----CCEEEEEEESCCC--------S----------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-H
T ss_pred EEEEEEEECCCCC----CCccEEEEECCCc--------c----------ccCCCeEEEEeCCcccccccCCCcCCccc-c
Confidence 4568999999763 7899999998741 1 1357999999987 34444554 3
Q ss_pred HHHHh--hccCCCc--hHHHHHHHHHHHH----cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC----
Q 008873 381 EASIK--HNCGRID--AEDQLTGAEWLIK----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---- 448 (550)
Q Consensus 381 ~~~~~--~~~~~~~--~~D~~~~~~~l~~----~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~---- 448 (550)
..... .+++... .-++.++++||.. ++.||++||+++|+|+||..++++++.. ++|+++|+.++..+
T Consensus 180 ~~ly~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~~G~~~ 258 (433)
T 4g4g_A 180 YDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGAGGAAC 258 (433)
T ss_dssp HHHHCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCTTTTSC
T ss_pred ccccCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCCCchhh
Confidence 32211 1222211 2388999999999 8899999999999999999999999976 47899998876433
Q ss_pred ccccc--chhhhh------ccC-CCCCCc--ccccc------CChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHH
Q 008873 449 WDGYD--TFYTEK------YMG-LPSEDP--VGYEY------SSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINAL 510 (550)
Q Consensus 449 ~~~~~--~~~~~~------~~g-~~~~~~--~~~~~------~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l 510 (550)
++... ..+.+. ..+ ..|..+ ..|.. .+-...+.-+. .|+|++.| .|..+++......+.++
T Consensus 259 ~R~~~~~~~~Ge~v~~~~~~~ge~~Wf~~~f~~y~~~~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~p~g~~~a~~aa 337 (433)
T 4g4g_A 259 WRISDQQKAAGANIQTAAQIITENPWFSRNFDPHVNSITSVPQDHHLLAALIVPRGLAVFEN-NIDWLGPVSTTGCMAAG 337 (433)
T ss_dssp HHHHHHHHHTTCCCCCHHHHTTTCCCSCTTTGGGTTCGGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTCHHHHHHHHHHH
T ss_pred hhhchhhcccCcchhhhhcccCCccccchhhHhhccccccCCcCHHHHHHhhCCceEEEecC-CCCcCCcHHHHHHHHHH
Confidence 21100 000000 001 112111 11110 01111122222 59999999 99988876555444333
Q ss_pred ----HHcCC--CeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 511 ----VAARK--PYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 511 ----~~~~~--~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+..|. ++.+...++.+|.....+. .+.+.+||+++|
T Consensus 338 ~~VY~~lGa~d~l~~~~~ggH~Hc~fp~~~----r~~~~~F~~k~L 379 (433)
T 4g4g_A 338 RLIYKAYGVPNNMGFSLVGGHNHCQFPSSQ----NQDLNSYINYFL 379 (433)
T ss_dssp HHHHHHHTCGGGEEEEECCSSCTTCCCGGG----HHHHHHHHHHHT
T ss_pred HHHHHHcCCccceEEEeeCCCCcccCCHHH----HHHHHHHHHHHh
Confidence 23354 5666665555564323222 356777888776
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-13 Score=123.38 Aligned_cols=207 Identities=15% Similarity=0.067 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCc--EEEEECCCCCCCC---chhhHHH-------Hhhc--cCC--Cc
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI--LVWKLDNRGTARR---GLKFEAS-------IKHN--CGR--ID 392 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~--~vv~~d~rG~g~~---~~~~~~~-------~~~~--~~~--~~ 392 (550)
+.||++||..++.. .|..+++.|++.|+ .|+.+|.++.|.. |.-.... ...+ .+. ..
T Consensus 7 ~pvvliHG~~~~~~-------~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~ 79 (249)
T 3fle_A 7 TATLFLHGYGGSER-------SETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKEN 79 (249)
T ss_dssp EEEEEECCTTCCGG-------GTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHH
T ss_pred CcEEEECCCCCChh-------HHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHH
Confidence 56677999665532 45667899999986 5888877766532 1000000 0000 000 02
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC-----eeEEEEEcCCcCCcccc-cchhh-hhc--cCC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWDGY-DTFYT-EKY--MGL 463 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-----~~~~~v~~~~~~~~~~~-~~~~~-~~~--~g~ 463 (550)
.+++.++++++.++. ..+++.++||||||.+++.++.++|+ +++.+|++++..+-... ...-. .++ .+.
T Consensus 80 ~~~l~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~~g~ 157 (249)
T 3fle_A 80 AYWIKEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVDKQGK 157 (249)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTTSCBCTTCC
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcchhhhcccCC
Confidence 456777788887664 34689999999999999999988763 78888888765442211 00000 011 122
Q ss_pred CCCCccccccCC-hhhhhhcCCCcEEEEecC------CCCCCChHHHHHHHHHHHHcCCCeEEEEcCC--CCCcCCCCCc
Q 008873 464 PSEDPVGYEYSS-VMHHVHKMKGKLLLVHGM------IDENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRRHRD 534 (550)
Q Consensus 464 ~~~~~~~~~~~~-~~~~~~~i~~P~lii~G~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~--~~H~~~~~~~ 534 (550)
|......|...- ....+.+.++|+|.|+|+ .|..||...+..+...++...+.++.+++++ +.|..... +
T Consensus 158 p~~~~~~~~~l~~~~~~~p~~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g~~a~Hs~l~~-n 236 (249)
T 3fle_A 158 PSRMNAAYRQLLSLYKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKGAKAQHSQLHE-N 236 (249)
T ss_dssp BSSCCHHHHHTGGGHHHHTTTTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEESGGGSTGGGGG-C
T ss_pred CcccCHHHHHHHHHHhhCCccCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeCCCCchhcccc-C
Confidence 222222232221 122333356799999998 7999999998887776665556667677765 88987553 3
Q ss_pred HHHHHHHHHHHH
Q 008873 535 RIYMEERIWEFI 546 (550)
Q Consensus 535 ~~~~~~~~~~fl 546 (550)
.++.+.|.+||
T Consensus 237 -~~V~~~I~~FL 247 (249)
T 3fle_A 237 -KDVANEIIQFL 247 (249)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHh
Confidence 47888888887
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=131.62 Aligned_cols=207 Identities=14% Similarity=0.012 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcE---E----------EEECCCCCCCCchhhHHHHhhcc--C-CCc
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGIL---V----------WKLDNRGTARRGLKFEASIKHNC--G-RID 392 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~---v----------v~~d~rG~g~~~~~~~~~~~~~~--~-~~~ 392 (550)
|.||++||.+++.. .|..+++.|+++++. + +.+|.++.+..+........... . ...
T Consensus 4 ~pvvllHG~~~~~~-------~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (254)
T 3ds8_A 4 IPIILIHGSGGNAS-------SLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDW 76 (254)
T ss_dssp CCEEEECCTTCCTT-------TTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHH
T ss_pred CCEEEECCCCCCcc-------hHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHH
Confidence 34678999766532 355678888887753 2 33443322211111000000000 0 011
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC-----eeEEEEEcCCcCCcccccchhh-hhccCCCCC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----VFQCAVSGAPVTSWDGYDTFYT-EKYMGLPSE 466 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~-~~~~g~~~~ 466 (550)
.+|+.++++.+.++.. .+++.++||||||.+++.++.++|+ +++++|+.++..+......... -...+.|..
T Consensus 77 a~~l~~~i~~l~~~~~--~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~p~~ 154 (254)
T 3ds8_A 77 SKWLKIAMEDLKSRYG--FTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGMDLSFKKLPNS 154 (254)
T ss_dssp HHHHHHHHHHHHHHHC--CSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCSCTTCSSCSSC
T ss_pred HHHHHHHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccccccccccCCcc
Confidence 4556666677776532 3689999999999999999999988 8999999988655332110000 001112221
Q ss_pred CccccccCChhhhhhcC--CCcEEEEecC------CCCCCChHHHHHHHHHHHHcCCCeEEEEcCC--CCCcCCCCCcHH
Q 008873 467 DPVGYEYSSVMHHVHKM--KGKLLLVHGM------IDENVHFRHTARLINALVAARKPYEILIFPD--ERHMPRRHRDRI 536 (550)
Q Consensus 467 ~~~~~~~~~~~~~~~~i--~~P~lii~G~------~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~--~~H~~~~~~~~~ 536 (550)
. ..+.. .+.....+ ++|+|+|+|. .|..||+..+..+...+......++...+.+ ++|..... +.
T Consensus 155 ~-~~~~~--~~~~~~~~~~~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g~~a~Hs~l~~-~~- 229 (254)
T 3ds8_A 155 T-PQMDY--FIKNQTEVSPDLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVGEDAVHQTLHE-TP- 229 (254)
T ss_dssp C-HHHHH--HHHTGGGSCTTCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEESGGGCGGGGGG-SH-
T ss_pred h-HHHHH--HHHHHhhCCCCcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeCCCCchhcccC-CH-
Confidence 1 11111 01111222 5799999999 9999999999888766644334455666665 67986443 33
Q ss_pred HHHHHHHHHHHHh
Q 008873 537 YMEERIWEFIERT 549 (550)
Q Consensus 537 ~~~~~~~~fl~~~ 549 (550)
++.+.+..||+++
T Consensus 230 ~v~~~i~~fL~~~ 242 (254)
T 3ds8_A 230 KSIEKTYWFLEKF 242 (254)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 5888999999865
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-12 Score=139.82 Aligned_cols=217 Identities=12% Similarity=0.088 Sum_probs=140.8
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++.|||||++|||+....+. ....|+++|+++|+.....+.
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~-------------------------------~~~~i~v~dl~tg~~~~~~~~------ 173 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGS-------------------------------DWREIHLMDVESKQPLETPLK------ 173 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSC-------------------------------CEEEEEEEETTTCSEEEEEEE------
T ss_pred EEEEEECCCCCEEEEEEecCCC-------------------------------ceEEEEEEECCCCCCCccccC------
Confidence 3567899999999998654322 125789999999997665442
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecC---------CCceEEEEEECCCCce--EEEEEeec--CceeeccCccccCCCCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRS---------QTKLKVLKFDIKTGQR--KVILVEEL--DSWVNLHDCFTPLDKGV 150 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~---------~~~~~l~~~~~~~g~~--~~l~~~~~--~~~~~~~~~~~~~~~~~ 150 (550)
......++|| ||+.|++...+. ....+||+.++.++.. +.|+.+.. +.|.- .+
T Consensus 174 ---~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~-----~~----- 239 (693)
T 3iuj_A 174 ---DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV-----GA----- 239 (693)
T ss_dssp ---EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE-----EE-----
T ss_pred ---CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE-----EE-----
Confidence 1113568999 999998887663 2345799999887653 56665443 33221 11
Q ss_pred ccCCCc-EE-EEEccCCc-cEEEEEeCCCc--eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCC
Q 008873 151 TKYSGG-FI-WASEKTGF-RHLYLHDINGT--CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW 225 (550)
Q Consensus 151 ~~~~~~-~~-~~s~~~g~-~~l~~~~~~~~--~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g 225 (550)
.+++|+ ++ +.+..++. .+||+++++++ +.++|+........ .|+++|++|||.++.+.+ ...|+.+++ ++
T Consensus 240 ~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~--~~~~~g~~l~~~t~~~~~-~~~l~~~d~--~~ 314 (693)
T 3iuj_A 240 TVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS--LVDNKGSTLYLLTNRDAP-NRRLVTVDA--AN 314 (693)
T ss_dssp EECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE--EEEEETTEEEEEECTTCT-TCEEEEEET--TS
T ss_pred EEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE--EEeccCCEEEEEECCCCC-CCEEEEEeC--CC
Confidence 245555 44 44444444 59999998765 56777765322222 278899999999987653 578999998 33
Q ss_pred CCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 226 NHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 226 ~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
... ...+.++....... .++++++.|++...... -+.|+++++. |...+.+
T Consensus 315 ~~~-~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~~g-~~~l~~~d~~-g~~~~~l 365 (693)
T 3iuj_A 315 PGP-AHWRDLIPERQQVL-TVHSGSGYLFAEYMVDA-TARVEQFDYE-GKRVREV 365 (693)
T ss_dssp CCG-GGCEEEECCCSSCE-EEEEETTEEEEEEEETT-EEEEEEECTT-SCEEEEE
T ss_pred CCc-cccEEEecCCCCEE-EEEEECCEEEEEEEECC-eeEEEEEECC-CCeeEEe
Confidence 210 12345554433222 88999999988876533 3589999985 4444444
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-12 Score=123.83 Aligned_cols=215 Identities=15% Similarity=0.182 Sum_probs=135.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCC---CCeEEEEEEECCCCce-EEEEcccCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGAS---NVKVRLGVVSAAGGPV-SWMDLQCGG 80 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~---~~~~~l~~~d~~~~~~-~~l~~~~~~ 80 (550)
..+.|||||++|+|+..+....... .....+.|...|.. ....+|+++|+++++. +.++.
T Consensus 107 ~~~~wspdg~~l~~~~~~~~~~~~~------------~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---- 170 (347)
T 2gop_A 107 RSLEWNEDSRKLLIVGFKRREDEDF------------IFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---- 170 (347)
T ss_dssp EEEEECTTSSEEEEEEECCCC---------------------CCCC---------CEEEEEEEETTTTEEEEEEEE----
T ss_pred cceeECCCCCEEEEEEccCCCcCCc------------EEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----
Confidence 5688999999999997653111110 22334445444421 2357899999999987 66632
Q ss_pred CCCCCCCceeEEEEECCCCeEEEEEEecCC-----C-ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC
Q 008873 81 TDQNYDEEYLARVNWMHGNILTAQVLNRSQ-----T-KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspDg~~i~~~~~r~~-----~-~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
. .+..+.||||| +++...+.. . ..+||.++ +|+.++|+.. .. . ..+ +.++
T Consensus 171 ------~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~--~-----~~~-----spdg 226 (347)
T 2gop_A 171 ------P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VS--F-----YAV-----DSDG 226 (347)
T ss_dssp ------E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ES--E-----EEE-----EECS
T ss_pred ------C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCceEEeccC-cc--e-----eeE-----CCCC
Confidence 2 45678999999 556555442 1 56899999 7888888764 21 1 111 1133
Q ss_pred CcEEEEEccC-----CccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC
Q 008873 155 GGFIWASEKT-----GFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT 228 (550)
Q Consensus 155 ~~~~~~s~~~-----g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~ 228 (550)
..+++.+... ...+||+++ +++.+.|+.+ +..+.....|+ || ++|++..++ ..+|| ++ +|
T Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~--~~~l~-~~---~g--- 292 (347)
T 2gop_A 227 ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEG--SVNLY-IW---DG--- 292 (347)
T ss_dssp SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETT--EEEEE-EE---SS---
T ss_pred CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCC--cEEEE-Ec---CC---
Confidence 4477776543 246899999 5667778765 55666534588 76 888877665 47888 77 23
Q ss_pred CCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 229 LEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 229 ~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
+.++++...+ ...++++| .++++.++...|++||+++ |+ .++|+.
T Consensus 293 --~~~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~---g~-~~~lt~ 338 (347)
T 2gop_A 293 --EIKPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD---GE-EKQLTD 338 (347)
T ss_dssp --SEEEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES---SS-EEECCC
T ss_pred --ceEEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC---Cc-EEEecc
Confidence 3455554443 55668888 4778888888899999987 54 456665
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-12 Score=138.44 Aligned_cols=220 Identities=13% Similarity=0.043 Sum_probs=140.6
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++.|||||++|||...+.+. ....|+++|+++|+..++++.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~-------------------------------~~~~i~v~d~~tg~~~~~~~~------ 169 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGS-------------------------------DWVTIKFMKVDGAKELPDVLE------ 169 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTC-------------------------------SCEEEEEEETTTTEEEEEEEE------
T ss_pred EEEEEECCCCCEEEEEEcCCCC-------------------------------ceEEEEEEECCCCCCCccccc------
Confidence 3578899999999998765432 124789999999988776442
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCC------------CceEEEEEECCCCce--EEEEEeec-CceeeccCccccCCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQ------------TKLKVLKFDIKTGQR--KVILVEEL-DSWVNLHDCFTPLDK 148 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~------------~~~~l~~~~~~~g~~--~~l~~~~~-~~~~~~~~~~~~~~~ 148 (550)
...+..++|||||+.|++...... ...+||+.++.+++. +.+..... +.|.. .+
T Consensus 170 ---~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~-----~~--- 238 (710)
T 2xdw_A 170 ---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMG-----GA--- 238 (710)
T ss_dssp ---EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE-----EE---
T ss_pred ---CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEE-----EE---
Confidence 111456899999999888865432 145799999998874 34443321 22211 11
Q ss_pred CCccCCCc--EEEEEccCC--ccEEEEEeCCC------c--eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 149 GVTKYSGG--FIWASEKTG--FRHLYLHDING------T--CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 149 ~~~~~~~~--~~~~s~~~g--~~~l~~~~~~~------~--~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.|++|+ +++.+.+.. ..+||++++++ + +.+.|+.+...+.. .|++||+.|||.++.+.+ ...|
T Consensus 239 --~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~--~~s~dg~~l~~~s~~~~~-~~~l 313 (710)
T 2xdw_A 239 --ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD--YVTNEGTVFTFKTNRHSP-NYRL 313 (710)
T ss_dssp --EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE--EEEEETTEEEEEECTTCT-TCEE
T ss_pred --EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE--EEeccCCEEEEEECCCCC-CCEE
Confidence 345555 555554432 57999999875 4 56777765332222 389999999999987543 4789
Q ss_pred EEEEeCCCCCCCCCCCeeeCCC-C--ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNG-K--GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~-~--~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
+.+++ ++... ...+.|+.. + ....+.+++ ++.++++.... ....|+++++.+|+..+.+.
T Consensus 314 ~~~d~--~~~~~-~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~-g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 314 INIDF--TDPEE-SKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHD-VKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp EEEET--TSCCG-GGCEEEECCCSSCEEEEEEEET-TTEEEEEEEET-TEEEEEEEETTTCCEEEEEC
T ss_pred EEEeC--CCCCc-ccceeccCCCCCCeEEEEEEEc-CCEEEEEEEEC-CEEEEEEEECCCCCEEEecC
Confidence 99998 33210 012455543 2 244566774 45666665543 33589999986776555554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-13 Score=141.40 Aligned_cols=193 Identities=9% Similarity=-0.032 Sum_probs=125.3
Q ss_pred EEEEEECC--C-CceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC------CCceEEEEEECCC------Cc
Q 008873 60 RLGVVSAA--G-GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS------QTKLKVLKFDIKT------GQ 124 (550)
Q Consensus 60 ~l~~~d~~--~-~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~------~~~~~l~~~~~~~------g~ 124 (550)
+||+++++ + ++.++++.... .........++|||||+.|++...+. ....+||++++++ |+
T Consensus 103 ~l~~~~~~~~g~~~~~~l~~~~~----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 103 RLYAFEPDAPGGAVPRPLTPVSA----VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp CEEEECTTSTTCCCCEECSCCCC----STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred eEEEEcCCCCCCCCCEeccCCcc----CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence 47999998 5 77776633100 00234567899999999998886542 2346899999999 88
Q ss_pred eEEEE-EeecCceeeccCccccCCCCCccCCCc--EEEEEccC-----CccEEEEEeCC-Cc---eeeccccc-CeEEEE
Q 008873 125 RKVIL-VEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASEKT-----GFRHLYLHDIN-GT---CLGPITEG-DWMVEQ 191 (550)
Q Consensus 125 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~-----g~~~l~~~~~~-~~---~~~~lT~~-~~~~~~ 191 (550)
.++|+ ... .+. ..+ .|++|+ +++.+... +..+||+++++ ++ +.++|+.+ ...+..
T Consensus 179 ~~~l~~~~~--~~~-~~~---------~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~ 246 (662)
T 3azo_A 179 VRELSDDAH--RFV-TGP---------RLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ 246 (662)
T ss_dssp SEESSCSCS--SEE-CCC---------EECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred eeEEEecCC--Ccc-cCc---------eECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence 87776 321 111 111 356665 56665432 23689999998 46 67788765 344555
Q ss_pred EEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc----------eEEEEECCCCCEEEEeecCCC
Q 008873 192 IVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG----------KHVAVLDHNMRNFVDFHDSLD 261 (550)
Q Consensus 192 ~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~----------~~~~~~s~dg~~l~~~~s~~~ 261 (550)
+. |+|||+ ++|+++.++. .+||++++ .++ +.++++.... ...+.++++++ ++++.+.
T Consensus 247 ~~-~spdg~-l~~~~~~~~~--~~l~~~~~--~~~----~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-- 313 (662)
T 3azo_A 247 AE-WAPDGS-LIVATDRTGW--WNLHRVDP--ATG----AATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-- 313 (662)
T ss_dssp EE-ECTTSC-EEEEECTTSS--CEEEEECT--TTC----CEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS--
T ss_pred eE-ECCCCe-EEEEECCCCC--eEEEEEEC--CCC----ceeecccccccccCccccccCceEeEeCCCE-EEEEEEc--
Confidence 54 999999 8888887653 68999987 332 4455554321 23456778876 4555555
Q ss_pred CCCEEEEEEcCCCceeEeccC
Q 008873 262 SPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 262 ~p~~l~~~~~~~g~~~~~l~~ 282 (550)
.-..|+++++.+++ ++.|+.
T Consensus 314 ~~~~l~~~d~~~~~-~~~l~~ 333 (662)
T 3azo_A 314 GAAVLGILDPESGE-LVDAAG 333 (662)
T ss_dssp SSCEEEEEETTTTE-EEECCS
T ss_pred CccEEEEEECCCCc-EEEecC
Confidence 44699999986665 566654
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-13 Score=131.73 Aligned_cols=223 Identities=11% Similarity=-0.013 Sum_probs=138.8
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh------CCcEEEEECCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS------KGILVWKLDNR 371 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~------~G~~vv~~d~r 371 (550)
...+.++. +|..|++....+.. ...|.||++||.+++.. .|......|++ .||.|+++|+|
T Consensus 85 ~~~~~~~i-~g~~i~~~~~~~~~-----~~~~pllllHG~~~s~~-------~~~~~~~~L~~~~~~~~~gf~vv~~Dlp 151 (408)
T 3g02_A 85 FPQFTTEI-EGLTIHFAALFSER-----EDAVPIALLHGWPGSFV-------EFYPILQLFREEYTPETLPFHLVVPSLP 151 (408)
T ss_dssp SCEEEEEE-TTEEEEEEEECCSC-----TTCEEEEEECCSSCCGG-------GGHHHHHHHHHHCCTTTCCEEEEEECCT
T ss_pred CCCEEEEE-CCEEEEEEEecCCC-----CCCCeEEEECCCCCcHH-------HHHHHHHHHhcccccccCceEEEEECCC
Confidence 34444444 88999998887643 23467888999887743 34445677776 69999999999
Q ss_pred CCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCC-ceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc
Q 008873 372 GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG-HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 372 G~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~-~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~ 450 (550)
|+|.+..... .......++.+.+..+.++- ..+ ++.++|||+||.+++.++.++|+++...+...++....
T Consensus 152 G~G~S~~~~~------~~~~~~~~~a~~~~~l~~~l--g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~~~~ 223 (408)
T 3g02_A 152 GYTFSSGPPL------DKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMSAPP 223 (408)
T ss_dssp TSTTSCCSCS------SSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCCCT
T ss_pred CCCCCCCCCC------CCCCCHHHHHHHHHHHHHHh--CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCCCCc
Confidence 9998764320 11234666666666666542 334 89999999999999999999988766666554433210
Q ss_pred ------cccc----------hh---------------------------------hhhcc--CC-CCCCc----------
Q 008873 451 ------GYDT----------FY---------------------------------TEKYM--GL-PSEDP---------- 468 (550)
Q Consensus 451 ------~~~~----------~~---------------------------------~~~~~--g~-~~~~~---------- 468 (550)
.+.. .+ .+.+. .. .....
T Consensus 224 ~~~~~~~l~~~e~~~~~~~~~~~~~~~~y~~~~~t~p~tl~~~l~dsP~gl~awi~ek~~~w~d~~~~~d~ll~~v~~y~ 303 (408)
T 3g02_A 224 EGPSIESLSAAEKEGIARMEKFMTDGYAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYW 303 (408)
T ss_dssp TCCCGGGSCHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHHSCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHHHHHhCcchhhhhcCcHHHHHHHHhcChHHHHhhhhhhhhhccCCCCCHHHHHHHHHHHH
Confidence 0000 00 00000 00 00000
Q ss_pred ---------cccccCCh--hh--------hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 469 ---------VGYEYSSV--MH--------HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 469 ---------~~~~~~~~--~~--------~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
..|.+... .. ...++++|+++++|..|...++.. +.+.. ..-+.+.+++++||..
T Consensus 304 ~t~~~~~s~~~y~e~~~~~~~~~~~~~~~~l~~i~vPt~v~~~~~D~~~~p~~---~~~~~---~~~~~~~~~~~gGHf~ 377 (408)
T 3g02_A 304 LTESFPRAIHTYREWVPTASAPNGATPYQKELYIHKPFGFSFFPKDLVPVPRS---WIATT---GNLVFFRDHAEGGHFA 377 (408)
T ss_dssp HTTHHHHHGGGHHHHTTC-------CTTTTTTCEEEEEEEEECTBSSSCCCHH---HHGGG---EEEEEEEECSSCBSCH
T ss_pred hhccchhHHHHHHhhcccccccccccccccCCCcCCCEEEEeCCcccccCcHH---HHHhc---CCeeEEEECCCCcCch
Confidence 00100000 00 234567899999999997666542 22221 2236788899999987
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q 008873 530 RRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 530 ~~~~~~~~~~~~~~~fl~~ 548 (550)
..+..+.+.+.+.+||.+
T Consensus 378 -~lE~Pe~~~~~l~~fl~~ 395 (408)
T 3g02_A 378 -ALERPRELKTDLTAFVEQ 395 (408)
T ss_dssp -HHHCHHHHHHHHHHHHHH
T ss_pred -hhhCHHHHHHHHHHHHHH
Confidence 557788899999999975
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=131.55 Aligned_cols=199 Identities=12% Similarity=-0.066 Sum_probs=117.4
Q ss_pred ceEEEEEcC--CCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 328 YKTLISVYG--GPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 328 ~P~vv~~hG--g~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
.|.||++|| ++++.. .|..+...| +.||.|+++|+||+|.+...... . ..+ ..|+.+.++.+.
T Consensus 81 ~~~lv~lhG~~~~~~~~-------~~~~~~~~L-~~~~~v~~~d~~G~G~~~~~~~~-~-~~~----~~~~~~~l~~~~- 145 (319)
T 3lcr_A 81 GPQLILVCPTVMTTGPQ-------VYSRLAEEL-DAGRRVSALVPPGFHGGQALPAT-L-TVL----VRSLADVVQAEV- 145 (319)
T ss_dssp SCEEEEECCSSTTCSGG-------GGHHHHHHH-CTTSEEEEEECTTSSTTCCEESS-H-HHH----HHHHHHHHHHHH-
T ss_pred CCeEEEECCCCcCCCHH-------HHHHHHHHh-CCCceEEEeeCCCCCCCCCCCCC-H-HHH----HHHHHHHHHHhc-
Confidence 478899999 333321 344456666 78999999999999864432110 0 000 233333333332
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhC---CCeeEEEEEcCCcCCccc--ccchhh--------hh---ccCCC--CCC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWDG--YDTFYT--------EK---YMGLP--SED 467 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~~~~~v~~~~~~~~~~--~~~~~~--------~~---~~g~~--~~~ 467 (550)
+..++.|+||||||.++..++.++ ++.++++|+.++...... ....+. .+ +.... ...
T Consensus 146 ----~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
T 3lcr_A 146 ----ADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQR 221 (319)
T ss_dssp ----TTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred ----CCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHH
Confidence 235899999999999999998876 788888888776543211 000000 00 00100 000
Q ss_pred cc---ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHH
Q 008873 468 PV---GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWE 544 (550)
Q Consensus 468 ~~---~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~ 544 (550)
.. .+...........+++|+|+++|+. ..+++.....+.+.+. ...+++.+++..|.+...++...+.+.+.+
T Consensus 222 l~~~~~~~~~~~~~~~~~i~~PvLli~g~~-~~~~~~~~~~~~~~~~---~~~~~~~~~g~H~~~~~~~~~~~va~~i~~ 297 (319)
T 3lcr_A 222 ITAQVWCLELLRGWRPEGLTAPTLYVRPAQ-PLVEQEKPEWRGDVLA---AMGQVVEAPGDHFTIIEGEHVASTAHIVGD 297 (319)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSCEEEEEESS-CSSSCCCTHHHHHHHH---TCSEEEEESSCTTGGGSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCEEEEEeCC-CCCCcccchhhhhcCC---CCceEEEeCCCcHHhhCcccHHHHHHHHHH
Confidence 00 0000000011256789999999988 5566666666665553 356788888744444343688899999999
Q ss_pred HHHHh
Q 008873 545 FIERT 549 (550)
Q Consensus 545 fl~~~ 549 (550)
||.+.
T Consensus 298 fL~~~ 302 (319)
T 3lcr_A 298 WLREA 302 (319)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99763
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=140.70 Aligned_cols=226 Identities=11% Similarity=0.043 Sum_probs=137.1
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCce---EEEEcccCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV---SWMDLQCGG 80 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~---~~l~~~~~~ 80 (550)
...+.|||||++|||.......- ++ .....|+++|+++++. +++.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~---------------------~~------s~~~~i~~~d~~~g~~~~~~~l~----- 109 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLW---------------------RY------SYTATYYIYDLSNGEFVRGNELP----- 109 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECS---------------------SS------CEEEEEEEEETTTTEECCSSCCC-----
T ss_pred eeeEEECCCCCeEEEEecCceeE---------------------Ee------ecceEEEEEECCCCccccceecC-----
Confidence 46789999999999987542110 00 0124689999999976 3331
Q ss_pred CCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee-eccCccc------cCCCCCccC
Q 008873 81 TDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV-NLHDCFT------PLDKGVTKY 153 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~-~~~~~~~------~~~~~~~~~ 153 (550)
..+..++|||||+.|++..++ .|++.++++|+.++|+.......+ ...+.+. .......|+
T Consensus 110 -------~~~~~~~~SPDG~~la~~~~~-----~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 110 -------RPIQYLCWSPVGSKLAYVYQN-----NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp -------SSBCCEEECSSTTCEEEEETT-----EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred -------cccccceECCCCCEEEEEECC-----eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 235568999999999888532 599999999998887643222100 0000000 000122567
Q ss_pred CCc--EEEEEccC-C------------------------------ccEEEEEeCCCceee---ccc------ccCeEEEE
Q 008873 154 SGG--FIWASEKT-G------------------------------FRHLYLHDINGTCLG---PIT------EGDWMVEQ 191 (550)
Q Consensus 154 ~~~--~~~~s~~~-g------------------------------~~~l~~~~~~~~~~~---~lT------~~~~~~~~ 191 (550)
||+ +++.+..+ + ...|+++++++++.+ +|+ .....+..
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 776 66655432 1 238899999887642 332 33444555
Q ss_pred EEeEeecCCEEEEEEcCCCCceeEEEEEE----eCCCCCCCCCCCeeeC-----CCCc-eE-----EEEECCCCCEEEEe
Q 008873 192 IVGVNEASGQVYFTGTLDGPLESHLYCAK----LYPDWNHTLEAPVKLT-----NGKG-KH-----VAVLDHNMRNFVDF 256 (550)
Q Consensus 192 ~~~~s~dg~~l~f~~~~~~~~~~~l~~v~----~~~~g~~~~~~~~~lt-----~~~~-~~-----~~~~s~dg~~l~~~ 256 (550)
+ .||||++ ++++..........|+.++ + .++ +.+.++ ...+ .. .+.|||||+.+++.
T Consensus 258 ~-~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~--~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 258 L-TWVTDER-VCLQWLKRVQNVSVLSICDFREDW--QTW----DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp E-EESSSSE-EEEEEEESSTTEEEEEEEEECSSS--SSE----ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred e-EEeCCCe-EEEEEeccccCeEEEEEEcccCCC--CCC----ceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 5 4999965 5555432222357899999 5 222 223333 1122 22 56899999998887
Q ss_pred ecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 257 HDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 257 ~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
.+....-..|+++++.+++ .+.++.
T Consensus 330 ~~~~~g~~~l~~~~~~~~~-~~~lt~ 354 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVEN-AIQITS 354 (719)
T ss_dssp EECTTSCEEEEEESSCSTT-CEECSC
T ss_pred EEccCCceEEEEEECCCCc-eEeccc
Confidence 6655556789999986665 456654
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=118.61 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCC---cEEEEECCCCCCC--CchhhH----H-HHhhccCC--------
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG---ILVWKLDNRGTAR--RGLKFE----A-SIKHNCGR-------- 390 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G---~~vv~~d~rG~g~--~~~~~~----~-~~~~~~~~-------- 390 (550)
+.||++||.+++.. .|..+++.|++.| +.|+.+|.++.|. +...+. . .+.-.+..
T Consensus 5 ~pvv~iHG~~~~~~-------~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~ 77 (250)
T 3lp5_A 5 APVIMVPGSSASQN-------RFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANI 77 (250)
T ss_dssp CCEEEECCCGGGHH-------HHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHH
T ss_pred CCEEEECCCCCCHH-------HHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCH
Confidence 34566999766533 4566788888876 5666655554442 111100 0 00000000
Q ss_pred -CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC-----CCeeEEEEEcCCcCCcccccchhhhhccCCC
Q 008873 391 -IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF-----PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLP 464 (550)
Q Consensus 391 -~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~ 464 (550)
...+++.++++.+.++. ..+++.++||||||.++..++.++ +++++.+|..++..+-.... +
T Consensus 78 ~~~a~~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~----------~ 145 (250)
T 3lp5_A 78 DKQAVWLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTS----------T 145 (250)
T ss_dssp HHHHHHHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCC----------S
T ss_pred HHHHHHHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCccccc----------c
Confidence 12467777888887664 346899999999999999988876 67889988887654322110 0
Q ss_pred CCCccccccCC-hhhhhhcCCCcEEEEecC----CCCCCChHHHHHHHHHHHHcCCCeEEEEcC--CCCCcCCCCCcHHH
Q 008873 465 SEDPVGYEYSS-VMHHVHKMKGKLLLVHGM----IDENVHFRHTARLINALVAARKPYEILIFP--DERHMPRRHRDRIY 537 (550)
Q Consensus 465 ~~~~~~~~~~~-~~~~~~~i~~P~lii~G~----~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p--~~~H~~~~~~~~~~ 537 (550)
......|...- ....+.+ ++|+|+|+|+ .|..||...+..+...+......+..+.+. +++|.... ++. .
T Consensus 146 ~~~~~~~~~l~~~~~~lp~-~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H~~l~-e~~-~ 222 (250)
T 3lp5_A 146 TAKTSMFKELYRYRTGLPE-SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKHFTEITVTGANTAHSDLP-QNK-Q 222 (250)
T ss_dssp SCCCHHHHHHHHTGGGSCT-TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSEEEEEECTTTTBSSCCHH-HHH-H
T ss_pred cccCHHHHHHHhccccCCC-CceEEEEEecCCCCCCceeeHHHHHHHHHHhcccccceEEEEEeCCCCchhcch-hCH-H
Confidence 00011111100 0011122 5899999999 999999998887766664433444445554 56798743 333 7
Q ss_pred HHHHHHHHHHH
Q 008873 538 MEERIWEFIER 548 (550)
Q Consensus 538 ~~~~~~~fl~~ 548 (550)
+.+.+.+||.+
T Consensus 223 v~~~I~~FL~~ 233 (250)
T 3lp5_A 223 IVSLIRQYLLA 233 (250)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHhc
Confidence 88899999853
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-11 Score=113.66 Aligned_cols=207 Identities=13% Similarity=0.115 Sum_probs=139.8
Q ss_pred eEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCCC
Q 008873 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNY 85 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 85 (550)
+-.++|||++|+|+..+.++... . .+ .. --+..|+.+++++++.++|.-.
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~--~----------------~~-~~---~n~~~Iy~i~~dg~~~~~l~~~-------- 106 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITS--Q----------------TF-FS---YDRNSLCRIKRNGHGSTVLDPD-------- 106 (302)
T ss_dssp EEEEEECSSEEEEEEECC------------------------CC-SS---CCSEEEEEEETTSCCCEEEECS--------
T ss_pred eeeEEEcCCEEEEEECCCCcccc--c----------------ce-ec---cCCCeEEEEeCCCCcceEeecC--------
Confidence 44578999999998765432100 0 00 00 0135799999999987777432
Q ss_pred CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCC
Q 008873 86 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTG 165 (550)
Q Consensus 86 ~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g 165 (550)
.. ..|+++|+.|++..........||++++++.+.++|+..... .+ .|.++.++|.++ |
T Consensus 107 -~~----~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~~-------~~-------~~~g~~iy~t~~--g 165 (302)
T 3s25_A 107 -PC----IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYLF-------TC-------NTSDRYFYYNNP--K 165 (302)
T ss_dssp -CE----EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCCC-------CS-------EEETTEEEEECT--T
T ss_pred -Cc----cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCce-------Ee-------eEECCEEEEEeC--C
Confidence 11 268999999988862122456799999999888888864221 01 244555666655 7
Q ss_pred ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEE
Q 008873 166 FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAV 245 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~ 245 (550)
..+||+++++|+..++|+.+... .+ ++|++++|||+...++ .+|+++++ +|+ ..++|+... . ..
T Consensus 166 ~~~Iy~~~l~g~~~~~l~~~~~~---~~-~~P~g~~iy~t~~~~~---~~I~~~~l--dG~----~~~~Lt~~~-~--~~ 229 (302)
T 3s25_A 166 NGQLYRYDTASQSEALFYDCNCY---KP-VVLDDTNVYYMDVNRD---NAIVHVNI--NNP----NPVVLTEAN-I--EH 229 (302)
T ss_dssp TCCEEEEETTTTEEEEEECSCEE---EE-EEEETTEEEEEEGGGT---TEEEEECS--SSC----CCEECSCSC-E--EE
T ss_pred CceEEEEECCCCCEEEEeCCCcc---ce-eeecCCEEEEEEcCCC---cEEEEEEC--CCC----CeEEEeCCC-c--ce
Confidence 78999999999988888876542 12 5599999999876543 58999999 776 567777543 2 45
Q ss_pred ECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 246 LDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 246 ~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
++|++++|++..... . ..|+.+++ +|+..++|..
T Consensus 230 ~~~~g~~Iy~~~~~~-~-~~i~~~~~-DG~~r~~l~~ 263 (302)
T 3s25_A 230 YNVYGSLIFYQRGGD-N-PALCVVKN-DGTGFKELAK 263 (302)
T ss_dssp EEEETTEEEEEECSS-S-CEEEEEET-TSCCCEEEEE
T ss_pred EEECCCEEEEEECCC-C-cEEEEEEC-CCCccEEeeC
Confidence 889999997764332 2 69999998 5655556654
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-13 Score=130.41 Aligned_cols=198 Identities=12% Similarity=0.013 Sum_probs=119.2
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHH-HHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE-WLI 404 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~-~l~ 404 (550)
+..|.||++||.+..... . .|..+...|. .+|.|+++|+||+|.+... ...++++.+.+. .+.
T Consensus 65 ~~~~~lvllhG~~~~~~~-~----~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~----------~~~~~~~a~~~~~~l~ 128 (300)
T 1kez_A 65 PGEVTVICCAGTAAISGP-H----EFTRLAGALR-GIAPVRAVPQPGYEEGEPL----------PSSMAAVAAVQADAVI 128 (300)
T ss_dssp SCSSEEEECCCSSTTCST-T----TTHHHHHHTS-SSCCBCCCCCTTSSTTCCB----------CSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcccCcH-H----HHHHHHHhcC-CCceEEEecCCCCCCCCCC----------CCCHHHHHHHHHHHHH
Confidence 345889999997664310 1 2333445554 4699999999999875421 122444444433 344
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcCCccc-c-cch---hhhhccCCCCC--Cc------
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDG-Y-DTF---YTEKYMGLPSE--DP------ 468 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~~~~~-~-~~~---~~~~~~g~~~~--~~------ 468 (550)
+.- +.+++.|+||||||.+++.++.++| ++++++|+.++...... . ..+ .....+..+.. ..
T Consensus 129 ~~~--~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (300)
T 1kez_A 129 RTQ--GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTAL 206 (300)
T ss_dssp HHC--SSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHHHHHHHHGGGCCCCSSCCCHHHHHHH
T ss_pred Hhc--CCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHHHHHHHHHHHHhCcCCccchHHHHHH
Confidence 332 4468999999999999999999887 48899999887653221 0 000 01111111100 00
Q ss_pred cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHc-CCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 469 VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA-RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 469 ~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~-~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
..+..........++++|+|+++| .|+.+++.. .. +.+. ..+.+++++|+ +|.....++...+.+.+.+||.
T Consensus 207 ~~~~~~~~~~~~~~i~~P~lii~G-~d~~~~~~~-~~----~~~~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~~fl~ 279 (300)
T 1kez_A 207 GAYDRLTGQWRPRETGLPTLLVSA-GEPMGPWPD-DS----WKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 279 (300)
T ss_dssp HHHHHHTTTCCCCCCSCCBEEEEE-SSCSSCCCS-SC----CSCCCSSCCEEEEESS-CTTTSSSSCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCCCCCEEEEEe-CCCCCCCcc-cc----hhhhcCCCCeEEEecC-CChhhccccHHHHHHHHHHHHH
Confidence 000000000123667899999999 566666554 22 2222 23579999999 9987533677888999999997
Q ss_pred H
Q 008873 548 R 548 (550)
Q Consensus 548 ~ 548 (550)
+
T Consensus 280 ~ 280 (300)
T 1kez_A 280 G 280 (300)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=132.02 Aligned_cols=216 Identities=11% Similarity=0.050 Sum_probs=135.3
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++.|||||++|||...+.+. ....|+++|+++|+.....+.
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~-------------------------------e~~~i~v~dl~tg~~~~~~~~------ 207 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGS-------------------------------DWRTVKFVGVADGKPLADELK------ 207 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTC-------------------------------SEEEEEEEETTTCCEEEEEEE------
T ss_pred EEeEEECCCCCEEEEEEcCCCC-------------------------------ceEEEEEEECCCCCCCCccCC------
Confidence 3578899999999998765332 124689999999988655331
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCC----------ceEEEEEECCCCce--EEEEEeecC-ceeeccCccccCCCCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQT----------KLKVLKFDIKTGQR--KVILVEELD-SWVNLHDCFTPLDKGV 150 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~----------~~~l~~~~~~~g~~--~~l~~~~~~-~~~~~~~~~~~~~~~~ 150 (550)
......++|||| +.|++....... ..+||+.++.+++. +.+...... .|.. .+
T Consensus 208 ---~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~-----~~----- 273 (741)
T 1yr2_A 208 ---WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH-----GA----- 273 (741)
T ss_dssp ---EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE-----EE-----
T ss_pred ---CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE-----EE-----
Confidence 112246899999 988887654331 45799999988863 444443221 1211 11
Q ss_pred ccCCCc--EEEEEccC--CccEEEEEeCCCc--e-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCC
Q 008873 151 TKYSGG--FIWASEKT--GFRHLYLHDINGT--C-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP 223 (550)
Q Consensus 151 ~~~~~~--~~~~s~~~--g~~~l~~~~~~~~--~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~ 223 (550)
.|++|+ +++.+.+. +..+||+++++++ + .+.|+.+.-....+ ++++|+.|||.++.+.+ ...|+.+++
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~--~~~dg~~l~~~s~~~~~-~~~l~~~d~-- 348 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF--VDGVGDQLWFVSGDGAP-LKKIVRVDL-- 348 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE--EEEETTEEEEEECTTCT-TCEEEEEEC--
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE--EeccCCEEEEEECCCCC-CCEEEEEeC--
Confidence 356665 55555443 4679999998876 6 77787653222222 56899999999987543 478999998
Q ss_pred CCCCCCCCCeeeCCCC-c-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 224 DWNHTLEAPVKLTNGK-G-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 224 ~g~~~~~~~~~lt~~~-~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
++.. ...+.+.... . ...++++ ++.++++.... .-.+|+++++ +|+..+.+.
T Consensus 349 ~~~~--~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~d-g~~~l~~~~~-~g~~~~~l~ 402 (741)
T 1yr2_A 349 SGST--PRFDTVVPESKDNLESVGIA--GNRLFASYIHD-AKSQVLAFDL-DGKPAGAVS 402 (741)
T ss_dssp SSSS--CEEEEEECCCSSEEEEEEEE--BTEEEEEEEET-TEEEEEEEET-TSCEEEECB
T ss_pred CCCc--cccEEEecCCCCeEEEEEEE--CCEEEEEEEEC-CEEEEEEEeC-CCCceeecc
Confidence 3310 1334554332 2 2233444 56777776543 3358999987 455455554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-11 Score=130.68 Aligned_cols=206 Identities=9% Similarity=-0.027 Sum_probs=130.3
Q ss_pred ceEEEc-CCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCC-ceEEEEcccCCCC
Q 008873 5 TGYWWS-LDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG-PVSWMDLQCGGTD 82 (550)
Q Consensus 5 ~~~~wS-Pdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~ 82 (550)
.++.|| |||++|||+....+. ....|+++|+++| +.. ..
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~-------------------------------~~~~l~v~dl~~g~~~l--~~------ 217 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGN-------------------------------EVYTIEFKRISDPSQTI--AD------ 217 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSS-------------------------------SCEEEEEEETTCTTCCC--CC------
T ss_pred eeeEecCCCCCEEEEEEeCCCC-------------------------------ceEEEEEEECCCCCEeC--Cc------
Confidence 568899 999999998764322 1246899999998 621 00
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCC-CceEEEEEECCCCce--EEEEEeecCceeeccCccccCCCCCccCCCc--E
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKTGQR--KVILVEELDSWVNLHDCFTPLDKGVTKYSGG--F 157 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~~g~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 157 (550)
........++|||||+.|+++..+.. ...+||.+++.+++. +.+.......|.. .+ .|++|+ +
T Consensus 218 --~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~-----~~-----~~SpDg~~l 285 (751)
T 2xe4_A 218 --KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSA-----FM-----YKAADTNTL 285 (751)
T ss_dssp --CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEE-----EE-----EECTTSSEE
T ss_pred --cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEE-----EE-----EECCCCCEE
Confidence 00112356899999998888765433 335899999998863 4555443333321 11 355655 5
Q ss_pred EEEEccCCccEEEEEeCCCc--ee--ecccccCeEEEEEEeEeec---CCEEEEEEcCCCCceeEEEEEEeCCCCCCCCC
Q 008873 158 IWASEKTGFRHLYLHDINGT--CL--GPITEGDWMVEQIVGVNEA---SGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230 (550)
Q Consensus 158 ~~~s~~~g~~~l~~~~~~~~--~~--~~lT~~~~~~~~~~~~s~d---g~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~ 230 (550)
++.+...+..+||+++++++ +. +.|+.+... . .|+++ |+.|||.++.++....+||++++. .+.
T Consensus 286 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~---~-~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~-~~~---- 356 (751)
T 2xe4_A 286 CIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG---V-RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG-QPS---- 356 (751)
T ss_dssp EEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT---C-CEEEEEETTTEEEEEECTTTCTTCEEEEEETT-STT----
T ss_pred EEEecCCCCceEEEEECCCCCCCceeEEeecCCCC---c-eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC-Ccc----
Confidence 66665556789999999775 45 677764321 1 14444 899999999762235799999982 111
Q ss_pred CCe--eeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 231 APV--KLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 231 ~~~--~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
..+ .++.........++++++.|+++... ....+|+++++
T Consensus 357 ~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~-~g~~~l~~~dl 398 (751)
T 2xe4_A 357 DWSHVLVDHSEDVFMESIAVRSNYLVVAGRR-AGLTRIWTMMA 398 (751)
T ss_dssp CCCCEEECCCSSEEEEEEEECSSEEEEEEEE-TTEEEEEEEEC
T ss_pred cceeeEECCCCCcEEEEEEEECCEEEEEEEe-CCEEEEEEEec
Confidence 223 34444332223455567788877654 34468999986
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.7e-13 Score=121.33 Aligned_cols=195 Identities=15% Similarity=0.178 Sum_probs=111.3
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|.||++||.+++.. .|..+...|+ .+|.|+++|.||+|.+... ...|+.+.++.+.+.
T Consensus 12 ~~~~lv~lhg~g~~~~-------~~~~~~~~L~-~~~~vi~~Dl~GhG~S~~~------------~~~~~~~~~~~~~~~ 71 (242)
T 2k2q_B 12 EKTQLICFPFAGGYSA-------SFRPLHAFLQ-GECEMLAAEPPGHGTNQTS------------AIEDLEELTDLYKQE 71 (242)
T ss_dssp CCCEEESSCCCCHHHH-------HHHHHHHHHC-CSCCCEEEECCSSCCSCCC------------TTTHHHHHHHHTTTT
T ss_pred CCceEEEECCCCCCHH-------HHHHHHHhCC-CCeEEEEEeCCCCCCCCCC------------CcCCHHHHHHHHHHH
Confidence 3467888999766532 3444556664 4799999999999977431 135666666665543
Q ss_pred CCC-CCCceEEEEechhHHHHHHHHhh------CCCeeEEEEEcCCcCCccc---c-cchhhhhcc---CCCCCC---cc
Q 008873 407 GLA-KVGHIGLYGWSYGGYLSAITLAR------FPDVFQCAVSGAPVTSWDG---Y-DTFYTEKYM---GLPSED---PV 469 (550)
Q Consensus 407 ~~~-d~~~i~i~G~S~GG~~a~~~~~~------~~~~~~~~v~~~~~~~~~~---~-~~~~~~~~~---g~~~~~---~~ 469 (550)
-.+ ..+++.++||||||.+++.++.+ +|+.+-......|...... . ...+..... +.+... .+
T Consensus 72 l~~~~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (242)
T 2k2q_B 72 LNLRPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKE 151 (242)
T ss_dssp CCCCCCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSEEEEEEECSCCCSCCCSSCTTHHHHHTTCCTTCCCCTTTHHHH
T ss_pred HHhhcCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEEEEECCCCCCCCcccccCCCHHHHHHHHHHhCCCChHHhcCHH
Confidence 212 23689999999999999999875 5765321111112111000 0 000111110 111100 00
Q ss_pred c-----------c---ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcH
Q 008873 470 G-----------Y---EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDR 535 (550)
Q Consensus 470 ~-----------~---~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~ 535 (550)
. + .... ...+.++++|+|+++|++|..++ ... +.+.+......+.++++ ||.+ ..++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~-~~~l~~i~~P~lvi~G~~D~~~~-~~~----~~~~~~~~~~~~~~~~~-gH~~-~~e~p 223 (242)
T 2k2q_B 152 VMSFFLPSFRSDYRALEQFE-LYDLAQIQSPVHVFNGLDDKKCI-RDA----EGWKKWAKDITFHQFDG-GHMF-LLSQT 223 (242)
T ss_dssp TTTTCCSCHHHHHHHHTCCC-CSCCTTCCCSEEEEEECSSCCHH-HHH----HHHHTTCCCSEEEEEEC-CCSH-HHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcc-cCCCCccCCCEEEEeeCCCCcCH-HHH----HHHHHHhcCCeEEEEeC-Ccee-EcCCH
Confidence 0 0 0000 01145688999999999998754 222 22333333445777875 8976 34556
Q ss_pred HHHHHHHHHHHHHh
Q 008873 536 IYMEERIWEFIERT 549 (550)
Q Consensus 536 ~~~~~~~~~fl~~~ 549 (550)
..+.+.+.+||++.
T Consensus 224 ~~~~~~i~~fl~~~ 237 (242)
T 2k2q_B 224 EEVAERIFAILNQH 237 (242)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcc
Confidence 78889999999753
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=120.88 Aligned_cols=196 Identities=12% Similarity=0.057 Sum_probs=112.3
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHH-HHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW-LIK 405 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~-l~~ 405 (550)
..|.||++||++++.. .| ..+.. | ..+|.|+++|+||.+.+... ...+.++.+.+.. +..
T Consensus 20 ~~~~lv~lhg~~~~~~---~~----~~~~~-l-~~~~~v~~~d~~G~~~~~~~----------~~~~~~~~~~~~~~i~~ 80 (265)
T 3ils_A 20 ARKTLFMLPDGGGSAF---SY----ASLPR-L-KSDTAVVGLNCPYARDPENM----------NCTHGAMIESFCNEIRR 80 (265)
T ss_dssp SSEEEEEECCTTCCGG---GG----TTSCC-C-SSSEEEEEEECTTTTCGGGC----------CCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHH---HH----HHHHh-c-CCCCEEEEEECCCCCCCCCC----------CCCHHHHHHHHHHHHHH
Confidence 3478889999877643 22 22345 4 67899999999997533211 1223443333322 222
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHh---hCCCeeEEEEEcCCcCCcc--ccc---chhhhh---ccCCCC----CCcc-
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLA---RFPDVFQCAVSGAPVTSWD--GYD---TFYTEK---YMGLPS----EDPV- 469 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~---~~~~~~~~~v~~~~~~~~~--~~~---~~~~~~---~~g~~~----~~~~- 469 (550)
.. ...++.++||||||.++..++. .+++++++++..++..... ... ..+.+. ..+.+. .+.+
T Consensus 81 ~~--~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (265)
T 3ils_A 81 RQ--PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAMEQLPRAFYEHCNSIGLFATQPGASPDGSTEP 158 (265)
T ss_dssp HC--SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCCCCCCHHHHHHHHHTTTTTTSSSSCSSSCSCC
T ss_pred hC--CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcccccCHHHHHHHHHHHHhCCCccccccCCHHH
Confidence 21 2358999999999999999987 6788888888876543211 110 001111 111100 1110
Q ss_pred --cc-----------ccCChhhhhhcCCCcEE-EEecCC---CCCCC--------------hHHHHHHHHHHHHcCCCeE
Q 008873 470 --GY-----------EYSSVMHHVHKMKGKLL-LVHGMI---DENVH--------------FRHTARLINALVAARKPYE 518 (550)
Q Consensus 470 --~~-----------~~~~~~~~~~~i~~P~l-ii~G~~---D~~v~--------------~~~~~~~~~~l~~~~~~~~ 518 (550)
.+ .... .....++++|++ +++|++ |..++ ......+.+.+ .+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~ 235 (265)
T 3ils_A 159 PSYLIPHFTAVVDVMLDYK-LAPLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIM--PGASFD 235 (265)
T ss_dssp CTTHHHHHHHHHHHTTTCC-CCCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHS--TTCCEE
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhC--Ccccee
Confidence 00 0000 011235789987 999999 98873 22222222211 124789
Q ss_pred EEEcCCCCCcCC-CCCcHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPR-RHRDRIYMEERIWEFI 546 (550)
Q Consensus 519 ~~~~p~~~H~~~-~~~~~~~~~~~~~~fl 546 (550)
++++|+++|.+. ..++...+.+.+.+||
T Consensus 236 ~~~i~gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 236 IVRADGANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp EEEEEEEETTGGGSTTTTHHHHHHHHHHT
T ss_pred EEEcCCCCcceeeChhhHHHHHHHHHHHh
Confidence 999999999874 2466667777777775
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-13 Score=134.01 Aligned_cols=164 Identities=11% Similarity=-0.016 Sum_probs=108.1
Q ss_pred CCceEEEEEcCCCCceeecccccccchh-HhHHHHh-CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~-~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
.+.|+||++||.+++.. ..| .. +.+.|++ .||.|+++|+||.|.+........... ...|+.+.++++
T Consensus 68 ~~~~~vvllHG~~~s~~--~~w----~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~~~~~~~~~~----~~~dl~~~i~~l 137 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSGE--NSW----LSDMCKNMFQVEKVNCICVDWKGGSKAQYSQASQNIRV----VGAEVAYLVQVL 137 (432)
T ss_dssp TTSEEEEEECCTTCCTT--SHH----HHHHHHHHHHHCCEEEEEEECHHHHTSCHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCCC--chH----HHHHHHHHHhcCCcEEEEEECccccCccchhhHhhHHH----HHHHHHHHHHHH
Confidence 34589999999765531 122 22 3555665 799999999999887652211111111 157888888988
Q ss_pred HHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcC
Q 008873 404 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKM 483 (550)
Q Consensus 404 ~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i 483 (550)
.++..++.+++.|+|||+||++++.++.++|++++.++..+|...+.... .+ ....+ ...
T Consensus 138 ~~~~g~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~p~~~~~---------~~------~~~l~-----~~d 197 (432)
T 1gpl_A 138 STSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAEPYFQDT---------PE------EVRLD-----PSD 197 (432)
T ss_dssp HHHHCCCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBCTTTTTC---------CT------TTSCC-----GGG
T ss_pred HHhcCCCcccEEEEEeCHHHHHHHHHHHhcccccceeEEeccccccccCC---------Ch------hhccC-----cCC
Confidence 76544567899999999999999999999999888888887754321100 00 00001 123
Q ss_pred CCcEEEEecCCCCCCCh---HHHHHHHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 484 KGKLLLVHGMIDENVHF---RHTARLINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~---~~~~~~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
..++.+||+..|..||. .... .-..+..||+++|..
T Consensus 198 a~~V~vIHt~~d~lVP~~~~g~~~----------~lg~~dfypngg~~q 236 (432)
T 1gpl_A 198 AKFVDVIHTDISPILPSLGFGMSQ----------KVGHMDFFPNGGKDM 236 (432)
T ss_dssp SSEEEEECSCCSCHHHHCCCBCSS----------CCSSEEEEEGGGSSC
T ss_pred CceEEEEEcCCccccccccccccc----------cccceEEccCCCCCC
Confidence 35899999999998886 2111 113456689999954
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.3e-13 Score=134.90 Aligned_cols=213 Identities=13% Similarity=0.046 Sum_probs=128.0
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHH--HhCCcEEEEECCCC-CCCCchhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL--RSKGILVWKLDNRG-TARRGLKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l--~~~G~~vv~~d~rG-~g~~~~~~~~~~~~~ 387 (550)
+...+|.|.... ..+++||||++|||+........ ++. ..++ ...|++||++|||. .-|+........ ..
T Consensus 86 l~l~v~~P~~~~-~~~~~Pviv~iHGGg~~~g~~~~----~~~-~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~-~~ 158 (522)
T 1ukc_A 86 LFINVFKPSTAT-SQSKLPVWLFIQGGGYAENSNAN----YNG-TQVIQASDDVIVFVTFNYRVGALGFLASEKVRQ-NG 158 (522)
T ss_dssp CEEEEEEETTCC-TTCCEEEEEEECCSTTTSCCSCS----CCC-HHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHH-SS
T ss_pred CEEEEEECCCCC-CCCCCCEEEEECCCccccCCccc----cCc-HHHHHhcCCcEEEEEecccccccccccchhccc-cC
Confidence 556778886532 22578999999999765432222 221 1222 25699999999993 211211101110 01
Q ss_pred cCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC----CCeeEEEEEcCCcCCcccccc---hhh
Q 008873 388 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAPVTSWDGYDT---FYT 457 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~----~~~~~~~v~~~~~~~~~~~~~---~~~ 457 (550)
.+...+.|+.++++|+.++ ...|++||+|+|+|+||+++...+... ..+|+++|+.+|......... ...
T Consensus 159 ~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~ 238 (522)
T 1ukc_A 159 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQF 238 (522)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCHHHHHHHH
Confidence 1234589999999999875 247999999999999999887776643 568999999988654221110 011
Q ss_pred hh---ccCCC--CCCccccccCChhhhhhc---------CCCc--EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEE
Q 008873 458 EK---YMGLP--SEDPVGYEYSSVMHHVHK---------MKGK--LLLVHGMIDENVHFRHTARLINALVAARKPYEILI 521 (550)
Q Consensus 458 ~~---~~g~~--~~~~~~~~~~~~~~~~~~---------i~~P--~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~ 521 (550)
.. .+|.. .+..+.++..+....+.. ...| .+.++...|..+.+.+..++.++.+..++++-+-.
T Consensus 239 ~~~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~~vp~l~G~ 318 (522)
T 1ukc_A 239 ERFVNDTGCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVPVLVGD 318 (522)
T ss_dssp HHHHHHTTCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSCCCCEEEEE
T ss_pred HHHHHHcCCCCHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcCCCCCCCEEEEe
Confidence 11 12322 111122222222221111 1223 55677788887777777777776555567777777
Q ss_pred cCCCCCcCC
Q 008873 522 FPDERHMPR 530 (550)
Q Consensus 522 ~p~~~H~~~ 530 (550)
..+++|.+.
T Consensus 319 ~~~Eg~~f~ 327 (522)
T 1ukc_A 319 DTDEGSNFA 327 (522)
T ss_dssp ETBGGGGTS
T ss_pred ecchhHHhh
Confidence 899999875
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-11 Score=129.90 Aligned_cols=217 Identities=11% Similarity=0.003 Sum_probs=134.3
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE-EEEcccCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTD 82 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~ 82 (550)
..++.|||||++|||+....+. ....|+++|+++|+.. .-.+
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~-------------------------------~~~~i~v~dl~tg~~~~~~~~------ 165 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAA-------------------------------DEAVLHVIDVDSGEWSKVDVI------ 165 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTC-------------------------------SCCEEEEEETTTCCBCSSCCB------
T ss_pred EEEEEECCCCCEEEEEECCCCC-------------------------------ceEEEEEEECCCCCCcCCccc------
Confidence 3578899999999998765332 0146899999999764 1111
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCC---------CceEEEEEECCCCce--EEEEEeecC-ceeeccCccccCCCCC
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQ---------TKLKVLKFDIKTGQR--KVILVEELD-SWVNLHDCFTPLDKGV 150 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~---------~~~~l~~~~~~~g~~--~~l~~~~~~-~~~~~~~~~~~~~~~~ 150 (550)
... ....++|||||+.|++...+.. ...+||+.++.+++. +.+....+. .+.- .+
T Consensus 166 -~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~-----~~----- 232 (695)
T 2bkl_A 166 -EGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL-----QS----- 232 (695)
T ss_dssp -SCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE-----EE-----
T ss_pred -Ccc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE-----EE-----
Confidence 111 1146899999999988876542 356799999999873 455543322 2211 11
Q ss_pred ccCCCc--EEEEEccC-CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCC
Q 008873 151 TKYSGG--FIWASEKT-GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNH 227 (550)
Q Consensus 151 ~~~~~~--~~~~s~~~-g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~ 227 (550)
.+++|+ +++.+... +..+||+++..+++.++|+.+.-.+..+ +.++|+ +||.++.+. ....|+.+++ ++..
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~g~-l~~~s~~~~-~~~~l~~~d~--~~~~ 306 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV--HAWKDR-FYVLTDEGA-PRQRVFEVDP--AKPA 306 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE--EEETTE-EEEEECTTC-TTCEEEEEBT--TBCS
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE--EecCCc-EEEEECCCC-CCCEEEEEeC--CCCC
Confidence 345555 55655554 5679999988777788888654333333 337888 999887643 2478999998 3321
Q ss_pred CCCCCeeeCCCC-c--eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 228 TLEAPVKLTNGK-G--KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 228 ~~~~~~~lt~~~-~--~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
. ...+.+.... . ...+.++ ++.++++.+. +.-.+|+++++. |+..+.+.
T Consensus 307 ~-~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~-dg~~~l~~~~~~-g~~~~~l~ 358 (695)
T 2bkl_A 307 R-ASWKEIVPEDSSASLLSVSIV--GGHLSLEYLK-DATSEVRVATLK-GKPVRTVQ 358 (695)
T ss_dssp G-GGCEEEECCCSSCEEEEEEEE--TTEEEEEEEE-TTEEEEEEEETT-CCEEEECC
T ss_pred c-cCCeEEecCCCCCeEEEEEEE--CCEEEEEEEE-CCEEEEEEEeCC-CCeeEEec
Confidence 0 0124555432 2 3445565 4466666554 334589999974 55445443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.8e-11 Score=133.19 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=122.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC--CCceEEEEEECCCCceEEEEEeecCcee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS--QTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~--~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
.||++++++++.++++. ....+..++|||||+.|++...+. ....+||++++++|+.++|+..... .
T Consensus 34 ~l~~~~~~gg~~~~lt~---------~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~--~ 102 (1045)
T 1k32_A 34 DLWEHDLKSGSTRKIVS---------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK--S 102 (1045)
T ss_dssp EEEEEETTTCCEEEEEC---------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE--E
T ss_pred cEEEEECCCCcEEEeee---------CCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCc--c
Confidence 47999999999988853 245788999999999999987762 2456899999999998887653221 1
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccC----CccEEEEEeCCCceeecccccCe-------------------------
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKT----GFRHLYLHDINGTCLGPITEGDW------------------------- 187 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~----g~~~l~~~~~~~~~~~~lT~~~~------------------------- 187 (550)
.. . ... .....|++|+ ++|.+..+ +..+||.+++++++.++|+.+..
T Consensus 103 ~~-~-~~~-~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~ 179 (1045)
T 1k32_A 103 TG-R-RMF-TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGY 179 (1045)
T ss_dssp ET-T-EEC-SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTC
T ss_pred cc-c-ccc-cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccc
Confidence 00 0 000 0001355555 77777654 45789999988887777665421
Q ss_pred -------------------------EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceE
Q 008873 188 -------------------------MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKH 242 (550)
Q Consensus 188 -------------------------~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~ 242 (550)
.+..+ .|+++ .++|++..++ ...||.++. ++. ..++++......
T Consensus 180 ~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~-~~s~d--~l~~~~~~dg--~~~l~~~~~--~g~----~~~~l~~~~~~~ 248 (1045)
T 1k32_A 180 RGGTRGKIWIEVNSGAFKKIVDMSTHVSSP-VIVGH--RIYFITDIDG--FGQIYSTDL--DGK----DLRKHTSFTDYY 248 (1045)
T ss_dssp CSTTCCEEEEEEETTEEEEEECCSSCCEEE-EEETT--EEEEEECTTS--SCEEEEEET--TSC----SCEECCCCCSSC
T ss_pred cCCCcCCEEEECCCCCeEECcCCCCcccce-EEeCC--EEEEEEeccC--ceEEEEEeC--CCC----cceEecCCCCcc
Confidence 00111 24443 7888877654 368998887 443 456777655555
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
...|||||+.+++.. ...++++++..
T Consensus 249 ~~~~SpDG~~la~~~-----~~~i~~~d~~~ 274 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK-----GGSIYIFNPDT 274 (1045)
T ss_dssp EEEEEESSSCEEEEE-----TTEEEEECTTT
T ss_pred eeeEcCCCCEEEEEe-----CCEEEEecCCc
Confidence 668999999998873 34888888743
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-11 Score=128.83 Aligned_cols=201 Identities=10% Similarity=0.050 Sum_probs=120.8
Q ss_pred EEEEEECCC-----CceEEEEcccCCCC------CCCCCceeEEEEECCCCeEEEEEEecC-------------------
Q 008873 60 RLGVVSAAG-----GPVSWMDLQCGGTD------QNYDEEYLARVNWMHGNILTAQVLNRS------------------- 109 (550)
Q Consensus 60 ~l~~~d~~~-----~~~~~l~~~~~~~~------~~~~~~~~~~~~wspDg~~i~~~~~r~------------------- 109 (550)
.|+++|+++ ++.++++....... ..+.......+.|||||+.|++.....
T Consensus 142 ~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence 689999999 88777644210000 000000135689999999888875221
Q ss_pred ----------CCceEEEEEECCCCceEEEEEee-cCceeeccCccccCCCCCccCCCc--EEEEE-cc-CCccEEEEEeC
Q 008873 110 ----------QTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGG--FIWAS-EK-TGFRHLYLHDI 174 (550)
Q Consensus 110 ----------~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s-~~-~g~~~l~~~~~ 174 (550)
.....|+++++++|+.+.++... ...++. .. .|++|+ +++.+ ++ .....|+++|+
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-----~~-----~~spdg~~l~~~~~~~~~~~~~v~~~d~ 291 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT-----NL-----SWSPDENILYVAEVNRAQNECKVNAYDA 291 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE-----EE-----EECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe-----eE-----EEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence 13467999999999877665321 111111 01 355655 44443 22 22468999999
Q ss_pred CCc-eeeccccc---CeE--EEEEEeEee--cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-eEE-E
Q 008873 175 NGT-CLGPITEG---DWM--VEQIVGVNE--ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG-KHV-A 244 (550)
Q Consensus 175 ~~~-~~~~lT~~---~~~--~~~~~~~s~--dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~-~~~-~ 244 (550)
+++ +.+.+... .|. +.. ..|+| ||+ ++++++.++ ..+||.++. ++. ..+.|+.... ... +
T Consensus 292 ~~g~~~~~~~~~~~~~~~~~~~~-~~~sp~~dg~-~l~~~~~~g--~~~l~~~~~--~~~----~~~~l~~~~~~v~~~~ 361 (706)
T 2z3z_A 292 ETGRFVRTLFVETDKHYVEPLHP-LTFLPGSNNQ-FIWQSRRDG--WNHLYLYDT--TGR----LIRQVTKGEWEVTNFA 361 (706)
T ss_dssp TTCCEEEEEEEEECSSCCCCCSC-CEECTTCSSE-EEEEECTTS--SCEEEEEET--TSC----EEEECCCSSSCEEEEE
T ss_pred CCCceeeEEEEccCCCeECccCC-ceeecCCCCE-EEEEEccCC--ccEEEEEEC--CCC----EEEecCCCCeEEEeee
Confidence 887 65555421 221 112 35999 987 555666554 378999986 443 4566766443 334 6
Q ss_pred EECCCCCEEEEeecCCC-CCCEEEEEEcCCCceeEecc
Q 008873 245 VLDHNMRNFVDFHDSLD-SPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 245 ~~s~dg~~l~~~~s~~~-~p~~l~~~~~~~g~~~~~l~ 281 (550)
.|||||+.|++..+... .-..||++++.+++ .+.++
T Consensus 362 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~ 398 (706)
T 2z3z_A 362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT 398 (706)
T ss_dssp EECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC
T ss_pred EEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc
Confidence 89999999988766532 12489999987665 45554
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=116.86 Aligned_cols=208 Identities=13% Similarity=0.017 Sum_probs=122.5
Q ss_pred EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccch-hHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhcc
Q 008873 310 VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVD-MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNC 388 (550)
Q Consensus 310 ~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~-~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~ 388 (550)
.+...++.|..... +..+.||++||..++.. ..| . .+.+.|+++||.|+++|+||+|..... .
T Consensus 15 ~l~~~i~~p~~~~~--~~~~~VvllHG~~~~~~--~~~----~~~l~~~L~~~G~~v~~~d~~g~g~~~~~---~----- 78 (317)
T 1tca_A 15 VLDAGLTCQGASPS--SVSKPILLVPGTGTTGP--QSF----DSNWIPLSTQLGYTPCWISPPPFMLNDTQ---V----- 78 (317)
T ss_dssp HHHHTEEETTBCTT--SCSSEEEEECCTTCCHH--HHH----TTTHHHHHHTTTCEEEEECCTTTTCSCHH---H-----
T ss_pred HHhheeeCCCCCCC--CCCCeEEEECCCCCCcc--hhh----HHHHHHHHHhCCCEEEEECCCCCCCCcHH---H-----
Confidence 34455666765421 23356888999765532 112 3 357889999999999999998754321 1
Q ss_pred CCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcCCcccccchhhhhccCCCC
Q 008873 389 GRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 465 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~ 465 (550)
..+++.+.++++.++. ..+++.|+||||||.++.+++..++ ++++++|+.+|............. ++.
T Consensus 79 ---~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~~~~--~~~-- 149 (317)
T 1tca_A 79 ---NTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDA--LAV-- 149 (317)
T ss_dssp ---HHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHH--TTC--
T ss_pred ---HHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhhhhh--hhh--
Confidence 1466777788877653 2478999999999999998887765 789999999886543221111000 000
Q ss_pred CCccc--cccCC-hhhhhh-----cCCCcEEEEecCCCCCCChHH--HHHHHHHHHHcCCCeEEEEc-------CCCCCc
Q 008873 466 EDPVG--YEYSS-VMHHVH-----KMKGKLLLVHGMIDENVHFRH--TARLINALVAARKPYEILIF-------PDERHM 528 (550)
Q Consensus 466 ~~~~~--~~~~~-~~~~~~-----~i~~P~lii~G~~D~~v~~~~--~~~~~~~l~~~~~~~~~~~~-------p~~~H~ 528 (550)
..+.. ....+ .+..+. ...+|+++++|..|..|++.. +......+. + .+.... ++.+|.
T Consensus 150 ~~~~~~~~~~~s~f~~~L~~~~~~~~~vp~~~i~g~~D~iV~p~~~~g~~~~~~l~--~--a~~~~~~~~~~~~~~~gH~ 225 (317)
T 1tca_A 150 SAPSVWQQTTGSALTTALRNAGGLTQIVPTTNLYSATDEIVQPQVSNSPLDSSYLF--N--GKNVQAQAVCGPLFVIDHA 225 (317)
T ss_dssp BCHHHHHTBTTCHHHHHHHHTTTTBCSSCEEEEECTTCSSSCCCCSSSTTSTTCCB--T--SEEEEHHHHHCTTCCCCTT
T ss_pred cCchHHhhCcCcHHHHHHHhcCCCCCCCCEEEEEeCCCCeECCccccccchhhhcc--C--CccEEeeeccCCCCccCcc
Confidence 00000 00000 011111 246899999999999998775 111111111 1 122222 578897
Q ss_pred CCCCCcHHHHHHHHHHHHHH
Q 008873 529 PRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 529 ~~~~~~~~~~~~~~~~fl~~ 548 (550)
... .+ ...+..+++||+.
T Consensus 226 ~~l-~~-p~~~~~v~~~L~~ 243 (317)
T 1tca_A 226 GSL-TS-QFSYVVGRSALRS 243 (317)
T ss_dssp HHH-HB-HHHHHHHHHHHHC
T ss_pred ccc-CC-HHHHHHHHHHhcC
Confidence 522 23 3456788899874
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-10 Score=110.56 Aligned_cols=177 Identities=11% Similarity=0.055 Sum_probs=125.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC----------CceEEEEEECCCCceEEEE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ----------TKLKVLKFDIKTGQRKVIL 129 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~----------~~~~l~~~~~~~g~~~~l~ 129 (550)
.||.++.++...++|+-+ . .--+++||+.|+|+..+.. +...||.+++++++.++|+
T Consensus 38 ~ly~~~~dg~~~~~l~~~-----------~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~ 104 (302)
T 3s25_A 38 RLYAMNIDGSNIHKLSND-----------T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD 104 (302)
T ss_dssp EEEEEETTSCSCEEEEEE-----------E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE
T ss_pred eEEEEcCCCCCCEEccCC-----------c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee
Confidence 589999999988888532 1 1246899999999977652 2568999999999988887
Q ss_pred EeecCceeeccCccccCCCCCccCCCcEEEEE-ccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 130 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWAS-EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
......+ ++ .++.++|.. .+.+...||+++++|++.++||.+.. . .++++|+.|||+..
T Consensus 105 ~~~~~~~-------s~-------~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~-~~~~~g~~iy~t~~- 164 (302)
T 3s25_A 105 PDPCIYA-------SL-------IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----F-TCNTSDRYFYYNNP- 164 (302)
T ss_dssp CSCEEEE-------EE-------ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----C-CSEEETTEEEEECT-
T ss_pred cCCccEE-------EE-------eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----e-EeeEECCEEEEEeC-
Confidence 6432222 11 233344443 25778899999999999999998754 2 37899999999976
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
. ..+||++++ +|+ ..++|..+. ... .++|++++|+++... ..+.|+++++. |...++|+..
T Consensus 165 g---~~~Iy~~~l--~g~----~~~~l~~~~-~~~-~~~P~g~~iy~t~~~--~~~~I~~~~ld-G~~~~~Lt~~ 225 (302)
T 3s25_A 165 K---NGQLYRYDT--ASQ----SEALFYDCN-CYK-PVVLDDTNVYYMDVN--RDNAIVHVNIN-NPNPVVLTEA 225 (302)
T ss_dssp T---TCCEEEEET--TTT----EEEEEECSC-EEE-EEEEETTEEEEEEGG--GTTEEEEECSS-SCCCEECSCS
T ss_pred C---CceEEEEEC--CCC----CEEEEeCCC-ccc-eeeecCCEEEEEEcC--CCcEEEEEECC-CCCeEEEeCC
Confidence 2 258999998 665 445665432 333 355999999887654 33799999985 5445677653
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-12 Score=133.63 Aligned_cols=214 Identities=15% Similarity=0.110 Sum_probs=122.2
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHH-HhCCcEEEEECCCCCC-CC--chhhHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGTA-RR--GLKFEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l-~~~G~~vv~~d~rG~g-~~--~~~~~~~~~~ 386 (550)
+...+|.|.... ..+++||||++|||+........+.. .....+.+ ...|++||.+|||... ++ ..+.. ..
T Consensus 98 l~l~v~~P~~~~-~~~~~Pv~v~iHGGg~~~g~~~~~~~-~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~---~~ 172 (534)
T 1llf_A 98 LTINVVRPPGTK-AGANLPVMLWIFGGGFEIGSPTIFPP-AQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIK---AE 172 (534)
T ss_dssp CEEEEEECTTCC-TTCCEEEEEEECCSTTTSCCGGGSCC-HHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHH---HH
T ss_pred eEEEEEECCCCC-CCCCceEEEEEeCCCcccCCCcccCc-hHHHHHHHhcCCCEEEEEeCCCCCCCCCCCccccc---cc
Confidence 566788897532 22578999999998765432222111 01111222 2469999999999532 11 11111 11
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--------CCeeEEEEEcCCcCC-ccccc-
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPVTS-WDGYD- 453 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--------~~~~~~~v~~~~~~~-~~~~~- 453 (550)
..+...+.|+.++++|+.++ ...|++||+|+|+|+||++++..+... ..+|+++|+.+|... .....
T Consensus 173 ~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~~~~~~~~~~ 252 (534)
T 1llf_A 173 GSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGAMVPSDPVDG 252 (534)
T ss_dssp TCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCCSCCCCCTTS
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccCcccCCCcCh
Confidence 23445589999999999875 347999999999999999887776643 457999999987432 11111
Q ss_pred ----chh--hhhccCCCCC--CccccccCChhhhhh---cCC------CcEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Q 008873 454 ----TFY--TEKYMGLPSE--DPVGYEYSSVMHHVH---KMK------GKLLLVHGMIDENVHFRHTARLINALVAARKP 516 (550)
Q Consensus 454 ----~~~--~~~~~g~~~~--~~~~~~~~~~~~~~~---~i~------~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~ 516 (550)
..+ ....+|.+.. ..+.++..+....++ ++. ...+.+....|..+-+.+..++.++.+..+++
T Consensus 253 ~~~~~~~~~~~~~~gc~~~~~~l~cLr~~~~~~l~~a~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~~g~~~~vp 332 (534)
T 1llf_A 253 TYGNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATNNTPGFLAYSSLRLSYLPRPDGKNITDDMYKLVRDGKYASVP 332 (534)
T ss_dssp HHHHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHHTSCCTTSTTTTSCSSCCCCCSSSSCSCHHHHHHTTCSCCCC
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHcCCHHHHHHHHHhcccccccccccccceeecCCccccCCHHHHHHcCCCCCCC
Confidence 001 0122343321 112233333222211 110 00122334456555556666666655445677
Q ss_pred eEEEEcCCCCCcC
Q 008873 517 YEILIFPDERHMP 529 (550)
Q Consensus 517 ~~~~~~p~~~H~~ 529 (550)
+-+-...+++|.+
T Consensus 333 ~l~G~~~~Eg~~f 345 (534)
T 1llf_A 333 VIIGDQNDEGTIF 345 (534)
T ss_dssp EEEEEETBTTHHH
T ss_pred EEEEEecCchhhh
Confidence 7777888898876
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-11 Score=113.53 Aligned_cols=104 Identities=18% Similarity=0.110 Sum_probs=67.0
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhC--CcEEEEECCCCCCCCchhhHHHHhhccCCCch-HHHHHHHHHHHHc
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDA-EDQLTGAEWLIKQ 406 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~--G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~-~D~~~~~~~l~~~ 406 (550)
.||++||...+..... .|....+.|++. |+.|+++|+ |+|.+........ ..+ +++...++.+...
T Consensus 7 pvVllHG~~~~~~~~~----~~~~~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~~~~------~~~~~~~~~~~~~l~~~ 75 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPL----SMGAIKKMVEKKIPGIHVLSLEI-GKTLREDVENSFF------LNVNSQVTTVCQILAKD 75 (279)
T ss_dssp CEEEECCTTCCSCCTT----TTHHHHHHHHHHSTTCCEEECCC-SSSHHHHHHHHHH------SCHHHHHHHHHHHHHSC
T ss_pred cEEEECCCCCCCCCcc----cHHHHHHHHHHHCCCcEEEEEEe-CCCCccccccccc------cCHHHHHHHHHHHHHhh
Confidence 3778999655431001 345567788765 889999997 8875532211111 113 3333444444432
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAP 445 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~ 445 (550)
..+ .+++.++||||||.++..++.++|+ .++.+|+.++
T Consensus 76 ~~l-~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 76 PKL-QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp GGG-TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred hhc-cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 211 2689999999999999999999998 4899887765
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-12 Score=131.01 Aligned_cols=216 Identities=18% Similarity=0.170 Sum_probs=122.4
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC-cEEEEECCC----CCCCCchh
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG-ILVWKLDNR----GTARRGLK 379 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G-~~vv~~d~r----G~g~~~~~ 379 (550)
+.|. +...+|.|... .+++|+||++|||+......... ......|+++| ++||++||| |.+..+..
T Consensus 81 ~edc--l~l~v~~P~~~---~~~~Pviv~iHGGg~~~g~~~~~----~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~ 151 (498)
T 2ogt_A 81 SEDG--LYLNIWSPAAD---GKKRPVLFWIHGGAFLFGSGSSP----WYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDS 151 (498)
T ss_dssp BSCC--CEEEEEESCSS---SCCEEEEEEECCSTTTSCCTTCG----GGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTT
T ss_pred CCCC--cEEEEEecCCC---CCCCcEEEEEcCCccCCCCCCCC----cCCHHHHHhCCCEEEEeCCCcCchhhccCchhh
Confidence 3444 44566778632 26789999999987543211111 11246677766 999999999 55444321
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcCCcccccc
Q 008873 380 FEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 380 ~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~~~~~~~~ 454 (550)
... .....+...+.|+.++++|+.++ ...|+++|+|+|+|+||++++.++... ..+|+++|+.+|.........
T Consensus 152 ~~~-~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~ 230 (498)
T 2ogt_A 152 FGE-AYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGSLLLRSP 230 (498)
T ss_dssp TCG-GGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTTTCBCH
T ss_pred ccc-cccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCccccccCH
Confidence 100 01112233489999999999876 347999999999999999998888753 468999999998765211110
Q ss_pred ----hhh---hhccCCCCCCccccccCChhhhhhcCCC--cEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCC
Q 008873 455 ----FYT---EKYMGLPSEDPVGYEYSSVMHHVHKMKG--KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE 525 (550)
Q Consensus 455 ----~~~---~~~~g~~~~~~~~~~~~~~~~~~~~i~~--P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~ 525 (550)
... ...+|.+.+..+.++..++...+..... |.+.+....|..+-+.+..++.++-+..++++-+-.-.++
T Consensus 231 ~~~~~~~~~~~~~~gc~~~~~~~Lr~~~~~~l~~~~~~~~~~~~f~PvvDg~~lp~~p~~~~~~g~~~~vp~liG~~~~E 310 (498)
T 2ogt_A 231 ETAMAMTERILDKAGIRPGDRERLLSIPAEELLRAALSLGPGVMYGPVVDGRVLRRHPIEALRYGAASGIPILIGVTKDE 310 (498)
T ss_dssp HHHHHHHHHHHHHHTCCTTCHHHHHHSCHHHHHHHHHTTTTSCCCCCBCCSSSCCSCHHHHHHTTTTTTCCEEEEEETTH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHcCCHHHHHHHHhhccCCCceeeeeCCcccccCHHHHHhcCCCCCCCEEEEEeccc
Confidence 000 1122443333344444443332221110 2222233334444444444444433334456666666777
Q ss_pred CCcCC
Q 008873 526 RHMPR 530 (550)
Q Consensus 526 ~H~~~ 530 (550)
++.+.
T Consensus 311 g~~f~ 315 (498)
T 2ogt_A 311 YNLFT 315 (498)
T ss_dssp HHHTT
T ss_pred hhhhh
Confidence 76553
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-10 Score=126.22 Aligned_cols=193 Identities=9% Similarity=0.056 Sum_probs=125.4
Q ss_pred EEEE-EEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 59 VRLG-VVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~-~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
..|+ ++|+++++.+.++ .....+..++|||||+.|++...+. .|+++++++|+.+.++..... .+
T Consensus 358 ~~l~~~~d~~~~~~~~l~---------~~~~~~~~~~~SpDG~~la~~~~~~----~v~~~d~~tg~~~~~~~~~~~-~v 423 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEKFE---------ENLGNVFAMGVDRNGKFAVVANDRF----EIMTVDLETGKPTVIERSREA-MI 423 (1045)
T ss_dssp EEEEEEEETTTCCEEECC---------CCCCSEEEEEECTTSSEEEEEETTS----EEEEEETTTCCEEEEEECSSS-CC
T ss_pred CceEEEEECCCCCceEec---------CCccceeeeEECCCCCEEEEECCCC----eEEEEECCCCceEEeccCCCC-Cc
Confidence 4789 9999998877663 1234567899999999998876543 599999999998887743211 10
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccC-------CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKT-------GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~-------g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
... .|++|+ +++.+... +..+|+++++++++.+.|+.+...+..+ .|+|||+.|+|.+.+
T Consensus 424 -----~~~-----~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~-~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 424 -----TDF-----TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP-AFDADSKNLYYLSYR 492 (1045)
T ss_dssp -----CCE-----EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEE-EECTTSCEEEEEESC
T ss_pred -----cce-----EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCc-eEcCCCCEEEEEecc
Confidence 011 355665 55554432 3468999999988888888776555555 499999999999874
Q ss_pred CCC-------------ceeEEEEEEeCCCCCCC--------------------CCCCeeeCCCC-ceEEEEECCCCCEEE
Q 008873 209 DGP-------------LESHLYCAKLYPDWNHT--------------------LEAPVKLTNGK-GKHVAVLDHNMRNFV 254 (550)
Q Consensus 209 ~~~-------------~~~~l~~v~~~~~g~~~--------------------~~~~~~lt~~~-~~~~~~~s~dg~~l~ 254 (550)
... ....+|.+.+..++... ......++... ....+.+||||+.++
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~ 572 (1045)
T 1k32_A 493 SLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 572 (1045)
T ss_dssp CCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEE
T ss_pred cCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEE
Confidence 321 11245655542111100 00123333332 356678999997666
Q ss_pred E---------eecCCCCCCEEEEEEcCCCce
Q 008873 255 D---------FHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 255 ~---------~~s~~~~p~~l~~~~~~~g~~ 276 (550)
. ..++...+..++++|+.+++.
T Consensus 573 ~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~ 603 (1045)
T 1k32_A 573 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV 603 (1045)
T ss_dssp ECCCCCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred EecccCcccccccccCCCceEEEEECCCCcE
Confidence 4 224456678999999987763
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-12 Score=131.62 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=124.1
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCchhhHHH-Hhhcc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEAS-IKHNC 388 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~~~~~~~-~~~~~ 388 (550)
+...+|.|.... ..+++||||++|||+........+.. .....+.++ ..|++||.+|||... .|-..... .....
T Consensus 106 l~l~v~~P~~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~-~~l~~~~l~~~~~~vvv~~nYRl~~-~gf~~~~~~~~~~~ 182 (544)
T 1thg_A 106 LYLNVFRPAGTK-PDAKLPVMVWIYGGAFVYGSSAAYPG-NSYVKESINMGQPVVFVSINYRTGP-FGFLGGDAITAEGN 182 (544)
T ss_dssp CEEEEEEETTCC-TTCCEEEEEEECCCTTCCSGGGGCCS-HHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHHHHHTC
T ss_pred eEEEEEeCCCCC-CCCCCcEEEEECCCccccCCccccCc-hHHHHHHhhcCCCEEEEeCCCCCCc-ccCCCcccccccCC
Confidence 555677886532 22578999999998765432222111 111122222 358999999999642 11000000 01123
Q ss_pred CCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--------CCeeEEEEEcCCcCC--cccc---
Q 008873 389 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPVTS--WDGY--- 452 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--------~~~~~~~v~~~~~~~--~~~~--- 452 (550)
+...+.|+.++++|+.++ ...|++||.|+|+|+||++++.++... ..+|+++|+.+|... +...
T Consensus 183 ~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~~~~~~ 262 (544)
T 1thg_A 183 TNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPYHDSSSVG 262 (544)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCCSSSCCSS
T ss_pred CchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccccccCcCChHH
Confidence 445589999999999875 347999999999999999998777642 457999999887432 1110
Q ss_pred -cchh--hhhccCCCCCC-----ccccccCChhhhhhcCC-----------CcEEEEecCCCCCCChHHHHHHHHHHHHc
Q 008873 453 -DTFY--TEKYMGLPSED-----PVGYEYSSVMHHVHKMK-----------GKLLLVHGMIDENVHFRHTARLINALVAA 513 (550)
Q Consensus 453 -~~~~--~~~~~g~~~~~-----~~~~~~~~~~~~~~~i~-----------~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 513 (550)
...+ ....+|..... .+.++..++...++... ...+.+....|..+.+.+..++.++.+..
T Consensus 263 ~~~~~~~~~~~~gc~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~p~~~~~~g~~~ 342 (544)
T 1thg_A 263 PDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPDGNIIPDAAYELFRSGRYA 342 (544)
T ss_dssp SSCHHHHHHHHHTCCTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHSTTTSCGGGTSCCCCCSSSSCSCHHHHHHTTCSC
T ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHhcCCHHHHHHhhhhcccccccccccccccceeeeCCcccCcCHHHHHhcCCCC
Confidence 0111 01122332211 12233333222111110 00112344556666667777777665556
Q ss_pred CCCeEEEEcCCCCCcCC
Q 008873 514 RKPYEILIFPDERHMPR 530 (550)
Q Consensus 514 ~~~~~~~~~p~~~H~~~ 530 (550)
++++-+-...+++|.+.
T Consensus 343 ~vp~l~G~~~~Eg~~f~ 359 (544)
T 1thg_A 343 KVPYISGNQEDEGTAFA 359 (544)
T ss_dssp CCCEEEEEETBTTTTTG
T ss_pred CccEEEEeecCchhhhc
Confidence 67888888899999874
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-12 Score=130.74 Aligned_cols=133 Identities=19% Similarity=0.261 Sum_probs=91.1
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCC-CCCCCchhhHHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNR-GTARRGLKFEAS 383 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~r-G~g~~~~~~~~~ 383 (550)
+.|. +...+|.|.... ..+++||||++|||+........ +.. ..+....|++||.+||| |..++......
T Consensus 95 ~edc--l~lnv~~P~~~~-~~~~~Pv~v~iHGG~~~~g~~~~----~~~-~~la~~~g~vvv~~nYRlg~~gf~~~~~~- 165 (542)
T 2h7c_A 95 SEDC--LYLNIYTPADLT-KKNRLPVMVWIHGGGLMVGAAST----YDG-LALAAHENVVVVTIQYRLGIWGFFSTGDE- 165 (542)
T ss_dssp ESCC--CEEEEEECSCTT-SCCCEEEEEEECCSTTTSCCSTT----SCC-HHHHHHHTCEEEEECCCCHHHHHCCCSST-
T ss_pred CCCC--cEEEEEECCCCC-CCCCCCEEEEECCCcccCCCccc----cCH-HHHHhcCCEEEEecCCCCccccCCCCCcc-
Confidence 3444 455678887642 22678999999998765432222 221 22333589999999999 33222111011
Q ss_pred HhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCcCC
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 448 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~~~ 448 (550)
...+...+.|+.++++|+.+. ...|++||.|+|+|+||+++..++.. .+.+|+++|+.+|...
T Consensus 166 --~~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 166 --HSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp --TCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred --cCccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 112334478999999999875 34799999999999999999988875 3679999999988654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-08 Score=97.47 Aligned_cols=184 Identities=9% Similarity=0.068 Sum_probs=105.0
Q ss_pred EEEEEECCCCce--EEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 60 RLGVVSAAGGPV--SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
.|+++|+++++. ..+... ......++|||||+.++ +.........|+++++++++.......... ..
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~ 131 (331)
T 3u4y_A 63 TLVQIETQLEPPKVVAIQEG---------QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYD-AV 131 (331)
T ss_dssp EEEEEECSSSSCEEEEEEEC---------SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTT-EE
T ss_pred eEEEEECCCCceeEEecccC---------CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCC-cc
Confidence 578999999885 333221 11222278999999887 544432333699999999987654432111 10
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccC-Cc-cEEEEEeCCCce----eecccccCeEEEEEEeEeecCCEEEEEEcCCC
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKT-GF-RHLYLHDINGTC----LGPITEGDWMVEQIVGVNEASGQVYFTGTLDG 210 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~-g~-~~l~~~~~~~~~----~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~ 210 (550)
. ..+++++ .+++++.. +. -.+|.++.++.. .+.+..+.. .... .|+|||+.||+....++
T Consensus 132 ~-----------~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~~-~~spdg~~l~v~~~~~~ 198 (331)
T 3u4y_A 132 G-----------IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTR-PFNI-TFTPDGNFAFVANLIGN 198 (331)
T ss_dssp E-----------EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSS-EEEE-EECTTSSEEEEEETTTT
T ss_pred c-----------eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCC-ccce-EECCCCCEEEEEeCCCC
Confidence 0 1345555 56666554 33 344554433221 122222222 2333 49999999988876543
Q ss_pred CceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 211 PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 211 ~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
.|+.+++. .+.. ......+........+.|+|||+++++.... ...++++++.+++.
T Consensus 199 ----~v~v~d~~-~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 199 ----SIGILETQ-NPEN-ITLLNAVGTNNLPGTIVVSRDGSTVYVLTES---TVDVFNFNQLSGTL 255 (331)
T ss_dssp ----EEEEEECS-STTS-CEEEEEEECSSCCCCEEECTTSSEEEEECSS---EEEEEEEETTTTEE
T ss_pred ----eEEEEECC-CCcc-cceeeeccCCCCCceEEECCCCCEEEEEEcC---CCEEEEEECCCCce
Confidence 56666772 2320 0003445444445667899999987665432 23689999987764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-08 Score=98.68 Aligned_cols=206 Identities=10% Similarity=-0.015 Sum_probs=127.7
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++|++...++ ..|+++|+++++......
T Consensus 77 ~~~~~spdg~~l~~~~~~~-----------------------------------~~v~v~d~~~~~~~~~~~-------- 113 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMAS-----------------------------------STLSVIDTTSNTVAGTVK-------- 113 (391)
T ss_dssp EEEEECTTSSEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEEE--------
T ss_pred cceEECCCCCEEEEEECCC-----------------------------------CEEEEEECCCCeEEEEEe--------
Confidence 5678999998887753321 147899999987654321
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 163 (550)
.......++|+|||+.+++..... ..|+++++.+++........... . .+ .+++++ .++++..
T Consensus 114 -~~~~~~~~~~s~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~--~---~~-------~~~~dg~~l~~~~~ 177 (391)
T 1l0q_A 114 -TGKSPLGLALSPDGKKLYVTNNGD---KTVSVINTVTKAVINTVSVGRSP--K---GI-------AVTPDGTKVYVANF 177 (391)
T ss_dssp -CSSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEEECCSSE--E---EE-------EECTTSSEEEEEET
T ss_pred -CCCCcceEEECCCCCEEEEEeCCC---CEEEEEECCCCcEEEEEecCCCc--c---eE-------EECCCCCEEEEEeC
Confidence 123457789999999776654332 25899999998876554422110 0 01 234444 5544432
Q ss_pred CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEE
Q 008873 164 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHV 243 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~ 243 (550)
+-..|+++|+.+++..........+... .|+++|+.|++...... ...|+.+++. .+. ....+........
T Consensus 178 -~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~--~~~v~~~d~~-~~~----~~~~~~~~~~~~~ 248 (391)
T 1l0q_A 178 -DSMSISVIDTVTNSVIDTVKVEAAPSGI-AVNPEGTKAYVTNVDKY--FNTVSMIDTG-TNK----ITARIPVGPDPAG 248 (391)
T ss_dssp -TTTEEEEEETTTTEEEEEEECSSEEEEE-EECTTSSEEEEEEECSS--CCEEEEEETT-TTE----EEEEEECCSSEEE
T ss_pred -CCCEEEEEECCCCeEEEEEecCCCccce-EECCCCCEEEEEecCcC--CCcEEEEECC-CCe----EEEEEecCCCccE
Confidence 2246889998776654443333344444 49999999988875321 2466777872 221 2333444444566
Q ss_pred EEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 244 ~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
+.++|||+++++..+.. ..+.++++.+++....+.
T Consensus 249 ~~~s~dg~~l~~s~~~d---~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 249 IAVTPDGKKVYVALSFX---NTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEEE
T ss_pred EEEccCCCEEEEEcCCC---CEEEEEECCCCcEEEEEE
Confidence 78999999886665432 489999998887655543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-08 Score=99.03 Aligned_cols=186 Identities=6% Similarity=-0.066 Sum_probs=113.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.++|+++++....-. ....+..++|+|||+.+++..... ..|+++++.+++............ .
T Consensus 55 ~i~v~d~~~~~~~~~~~---------~~~~v~~~~~spdg~~l~~~~~~~---~~v~v~d~~~~~~~~~~~~~~~~~-~- 120 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVP---------AGSSPQGVAVSPDGKQVYVTNMAS---STLSVIDTTSNTVAGTVKTGKSPL-G- 120 (391)
T ss_dssp EEEEEETTTTEEEEEEE---------CSSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEEECSSSEE-E-
T ss_pred eEEEEECCCCeEEEEEE---------CCCCccceEECCCCCEEEEEECCC---CEEEEEECCCCeEEEEEeCCCCcc-e-
Confidence 47889999887654311 122667899999999887664332 249999999998765544322110 0
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
+ .+++++ .++++.. +...|+++++.+++..........+... .|+++|+.|+++...++ .|+.
T Consensus 121 ---~-------~~s~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~dg~~l~~~~~~~~----~v~~ 184 (391)
T 1l0q_A 121 ---L-------ALSPDGKKLYVTNN-GDKTVSVINTVTKAVINTVSVGRSPKGI-AVTPDGTKVYVANFDSM----SISV 184 (391)
T ss_dssp ---E-------EECTTSSEEEEEET-TTTEEEEEETTTTEEEEEEECCSSEEEE-EECTTSSEEEEEETTTT----EEEE
T ss_pred ---E-------EECCCCCEEEEEeC-CCCEEEEEECCCCcEEEEEecCCCcceE-EECCCCCEEEEEeCCCC----EEEE
Confidence 1 234444 4544322 2347899998776654333322223444 49999999988876553 4666
Q ss_pred EEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 219 AKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.++. .+. ....+........+.++|+|++++...... ....++++++.+++.+..+.
T Consensus 185 ~d~~-~~~----~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~~~~v~~~d~~~~~~~~~~~ 241 (391)
T 1l0q_A 185 IDTV-TNS----VIDTVKVEAAPSGIAVNPEGTKAYVTNVDK-YFNTVSMIDTGTNKITARIP 241 (391)
T ss_dssp EETT-TTE----EEEEEECSSEEEEEEECTTSSEEEEEEECS-SCCEEEEEETTTTEEEEEEE
T ss_pred EECC-CCe----EEEEEecCCCccceEECCCCCEEEEEecCc-CCCcEEEEECCCCeEEEEEe
Confidence 7872 221 223333333456678999999887765421 23589999998887555443
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=116.17 Aligned_cols=112 Identities=13% Similarity=-0.042 Sum_probs=81.1
Q ss_pred CCceEEEEEcCCCCceeecccccccchh-HhHHHHh-CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~-~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
...|+||++||.++... .. |.. +.+.|.+ .||.|+++|+||+|.+........... ..+|+.+.+++|
T Consensus 68 ~~~p~vvliHG~~~~~~--~~----w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~~~~~~~~~~~----~~~dl~~li~~L 137 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKGE--DG----WLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNTRV----VGAEIAFLVQVL 137 (452)
T ss_dssp TTSEEEEEECCSCCTTC--TT----HHHHHHHHHHTTCCEEEEEEECHHHHSSCHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCCC--ch----HHHHHHHHHHhhCCCEEEEEechhcccCchhHhHhhHHH----HHHHHHHHHHHH
Confidence 34689999999776531 12 222 3455554 599999999999987652111111111 256788888888
Q ss_pred HHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 404 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 404 ~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
.++..++.+++.|+|||+||++++.++.++|++++.++..+|..
T Consensus 138 ~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 138 STEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp HHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred HHhcCCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 76544567899999999999999999999999999999987754
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-10 Score=117.86 Aligned_cols=133 Identities=18% Similarity=0.237 Sum_probs=87.9
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCC-CCCchhhHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGT-ARRGLKFEA 382 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~-g~~~~~~~~ 382 (550)
+.|. +...+|.|... ..+++||||++|||+........ ..+ ....|++ .|++||.+|||.. -|+....
T Consensus 93 ~edc--l~l~v~~P~~~--~~~~~Pviv~iHGGg~~~g~~~~--~~~--~~~~la~~~g~vvv~~nYRlg~~Gf~~~~-- 162 (543)
T 2ha2_A 93 SEDC--LYLNVWTPYPR--PASPTPVLIWIYGGGFYSGAASL--DVY--DGRFLAQVEGAVLVSMNYRVGTFGFLALP-- 162 (543)
T ss_dssp ESCC--CEEEEEEESSC--CSSCEEEEEEECCSTTTCCCTTS--GGG--CTHHHHHHHCCEEEEECCCCHHHHHCCCT--
T ss_pred CCcC--CeEEEeecCCC--CCCCCeEEEEECCCccccCCCCC--CcC--ChHHHHhcCCEEEEEecccccccccccCC--
Confidence 3455 44566677643 12578999999998754332111 111 2455664 8999999999932 1111000
Q ss_pred HHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcC
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 447 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~ 447 (550)
......+...+.|+.++++|+.++ ...|++||.|+|+|+||++++.++... +.+|+++|+.+|..
T Consensus 163 ~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 163 GSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp TCSSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 000112233489999999999875 247999999999999999998887643 46899999998853
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-10 Score=116.39 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=86.9
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCC----CCCchhhHHHHh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGT----ARRGLKFEASIK 385 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~----g~~~~~~~~~~~ 385 (550)
+...+|.|.... +++||||++|||+........ ..+ ....|++ .|++||++|||.. ...... .
T Consensus 93 l~lnv~~P~~~~---~~~Pv~v~iHGGg~~~g~~~~--~~~--~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~-----~ 160 (529)
T 1p0i_A 93 LYLNVWIPAPKP---KNATVLIWIYGGGFQTGTSSL--HVY--DGKFLARVERVIVVSMNYRVGALGFLALPGN-----P 160 (529)
T ss_dssp CEEEEEEESSCC---SSEEEEEEECCSTTTSCCTTC--GGG--CTHHHHHHHCCEEEEECCCCHHHHHCCCTTC-----T
T ss_pred CeEEEeeCCCCC---CCCeEEEEECCCccccCCCCc--ccc--ChHHHhccCCeEEEEecccccccccccCCCC-----C
Confidence 455677886532 578999999998754332111 111 2455665 7999999999932 111000 0
Q ss_pred hccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcC
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 447 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~ 447 (550)
...+...+.|+.++++|+.++ ...|++||.|+|+|+||.++..++... ..+|+++|+.+|..
T Consensus 161 ~~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 227 (529)
T 1p0i_A 161 EAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 227 (529)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred CCcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCcc
Confidence 112333489999999999875 347999999999999999999888753 45899999999864
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.8e-10 Score=102.19 Aligned_cols=184 Identities=10% Similarity=-0.031 Sum_probs=106.5
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.||++||.+++.. .|..+...|. .++.|+.+|++|.+. ..+++.+.++.+.
T Consensus 22 ~~~l~~~hg~~~~~~-------~~~~~~~~l~-~~~~v~~~d~~g~~~----------------~~~~~~~~i~~~~--- 74 (244)
T 2cb9_A 22 GKNLFCFPPISGFGI-------YFKDLALQLN-HKAAVYGFHFIEEDS----------------RIEQYVSRITEIQ--- 74 (244)
T ss_dssp SSEEEEECCTTCCGG-------GGHHHHHHTT-TTSEEEEECCCCSTT----------------HHHHHHHHHHHHC---
T ss_pred CCCEEEECCCCCCHH-------HHHHHHHHhC-CCceEEEEcCCCHHH----------------HHHHHHHHHHHhC---
Confidence 367888999766532 2333455554 589999999998531 1345555554431
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhC---CCeeEEEEEcCCcCCcccccchhhhhccCCCCCCc---ccc-------ccC
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDP---VGY-------EYS 474 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~-------~~~ 474 (550)
...++.++||||||.++..++.+. ++.++.++..++..........-....+.. ...+ +.+ ...
T Consensus 75 --~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 151 (244)
T 2cb9_A 75 --PEGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSITADTENDDSAA-YLPEAVRETVMQKKRCYQEY 151 (244)
T ss_dssp --SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSCCCCC-------C-CSCHHHHHHHTHHHHHHHHH
T ss_pred --CCCCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCcccccccccHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 135799999999999999988764 567888887765432110000000000000 0000 000 000
Q ss_pred Ch-hhhhhcCCCcEEEEecC--CCCCCChHHHHHHHHHHHHc-CCCeEEEEcCCCCC--cCCCCCcHHHHHHHHHHHHHH
Q 008873 475 SV-MHHVHKMKGKLLLVHGM--IDENVHFRHTARLINALVAA-RKPYEILIFPDERH--MPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 475 ~~-~~~~~~i~~P~lii~G~--~D~~v~~~~~~~~~~~l~~~-~~~~~~~~~p~~~H--~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.. .....++++|+++++|+ .|. +++... ..+.+. ..++++..+|+ +| .+ ..++...+.+.+.+||.+
T Consensus 152 ~~~~~~~~~i~~Pvl~i~g~~~~D~-~~~~~~----~~w~~~~~~~~~~~~i~g-gH~~~~-~~~~~~~~~~~i~~~L~~ 224 (244)
T 2cb9_A 152 WAQLINEGRIKSNIHFIEAGIQTET-SGAMVL----QKWQDAAEEGYAEYTGYG-AHKDML-EGEFAEKNANIILNILDK 224 (244)
T ss_dssp HHHCCCCSCBSSEEEEEECSBCSCC-CHHHHT----TSSGGGBSSCEEEEECSS-BGGGTT-SHHHHHHHHHHHHHHHHT
T ss_pred HHhhccCCCcCCCEEEEEccCcccc-ccccch----hHHHHhcCCCCEEEEecC-ChHHHc-ChHHHHHHHHHHHHHHhc
Confidence 00 01235678999999999 786 333222 222222 24689999997 88 44 445667788888899875
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-10 Score=114.20 Aligned_cols=112 Identities=12% Similarity=-0.011 Sum_probs=80.0
Q ss_pred CCceEEEEEcCCCCceeecccccccchh-HhHHHHh-CCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDM-RAQYLRS-KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~-~~~~l~~-~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
...|+||++||.++... .. |.. +...|.+ .||.|+++|+||+|.+...........+ .+|+.+.+++|
T Consensus 68 ~~~p~vvliHG~~~~~~--~~----w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~~~~~~~~~~~~----~~dl~~~i~~L 137 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRGE--DS----WPSDMCKKILQVETTNCISVDWSSGAKAEYTQAVQNIRIV----GAETAYLIQQL 137 (452)
T ss_dssp TTSCEEEEECCTTCCSS--SS----HHHHHHHHHHTTSCCEEEEEECHHHHTSCHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCCC--ch----HHHHHHHHHHhhCCCEEEEEecccccccccHHHHHhHHHH----HHHHHHHHHHH
Confidence 34589999999765531 12 222 3455555 4999999999999876521111111111 56788888888
Q ss_pred HHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 404 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 404 ~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
.++..++.+++.|+|||+||+++..++.++|++++.++..+|..
T Consensus 138 ~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 138 LTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp HHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred HHhcCCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 76533457899999999999999999999999999999987754
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-10 Score=104.39 Aligned_cols=184 Identities=13% Similarity=0.030 Sum_probs=106.5
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.|+++||.+++.. .|..+...|.+ +.|+.+|++|.+.. ..|+.+.++.+.
T Consensus 17 ~~~l~~~hg~~~~~~-------~~~~~~~~l~~--~~v~~~d~~g~~~~----------------~~~~~~~i~~~~--- 68 (230)
T 1jmk_C 17 EQIIFAFPPVLGYGL-------MYQNLSSRLPS--YKLCAFDFIEEEDR----------------LDRYADLIQKLQ--- 68 (230)
T ss_dssp SEEEEEECCTTCCGG-------GGHHHHHHCTT--EEEEEECCCCSTTH----------------HHHHHHHHHHHC---
T ss_pred CCCEEEECCCCCchH-------HHHHHHHhcCC--CeEEEecCCCHHHH----------------HHHHHHHHHHhC---
Confidence 367889999766532 23444555654 99999999986521 345555555442
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhC---CCeeEEEEEcCCcCCcc--ccc-----chhhhhccCCCCCC----c---cc
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWD--GYD-----TFYTEKYMGLPSED----P---VG 470 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~~~~~v~~~~~~~~~--~~~-----~~~~~~~~g~~~~~----~---~~ 470 (550)
...++.++|||+||.++..++.+. ++.++.++..++..... ... ..........+... + ..
T Consensus 69 --~~~~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (230)
T 1jmk_C 69 --PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHG 146 (230)
T ss_dssp --CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHHHH
T ss_pred --CCCCeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCcccccccccHHHHHHHHHhcChhhhhhhhHHHHHH
Confidence 125799999999999999988764 35678887776542210 000 00000000000000 0 00
Q ss_pred ccc----CChh----hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHH-cCCCeEEEEcCCCCC--cCCCCCcHHHHH
Q 008873 471 YEY----SSVM----HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA-ARKPYEILIFPDERH--MPRRHRDRIYME 539 (550)
Q Consensus 471 ~~~----~~~~----~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~-~~~~~~~~~~p~~~H--~~~~~~~~~~~~ 539 (550)
+.. .... ....++++|+++++|+.|..++. .. ..+.+ ...++++..+|+ +| .+ ..++...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~-~~----~~w~~~~~~~~~~~~i~g-~H~~~~-~~~~~~~~~ 219 (230)
T 1jmk_C 147 LKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPE-WL----ASWEEATTGAYRMKRGFG-THAEML-QGETLDRNA 219 (230)
T ss_dssp HHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCT-TE----ECSGGGBSSCEEEEECSS-CGGGTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccEEEEEeCCCCCCcc-cc----chHHHhcCCCeEEEEecC-ChHHHc-CcHhHHHHH
Confidence 000 0000 12356789999999999998872 11 11222 234689999997 88 55 445566777
Q ss_pred HHHHHHHHH
Q 008873 540 ERIWEFIER 548 (550)
Q Consensus 540 ~~~~~fl~~ 548 (550)
+.+.+||.+
T Consensus 220 ~~i~~~l~~ 228 (230)
T 1jmk_C 220 GILLEFLNT 228 (230)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 778888754
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-10 Score=115.92 Aligned_cols=125 Identities=18% Similarity=0.284 Sum_probs=87.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCC----CCC-chhhHHHH
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGT----ARR-GLKFEASI 384 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~----g~~-~~~~~~~~ 384 (550)
+...+|.|.... +++||||++|||+........ ..+ ....|+ +.|++||.+|||.. ... +.
T Consensus 95 l~lnv~~P~~~~---~~~Pv~v~iHGG~~~~g~~~~--~~~--~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~------ 161 (537)
T 1ea5_A 95 LYLNIWVPSPRP---KSTTVMVWIYGGGFYSGSSTL--DVY--NGKYLAYTEEVVLVSLSYRVGAFGFLALHGS------ 161 (537)
T ss_dssp CEEEEEECSSCC---SSEEEEEEECCSTTTCCCTTC--GGG--CTHHHHHHHTCEEEECCCCCHHHHHCCCTTC------
T ss_pred CeEEEeccCCCC---CCCeEEEEECCCcccCCCCCC--Ccc--ChHHHHhcCCEEEEEeccCccccccccCCCC------
Confidence 455667886531 678999999998765432211 111 245566 78999999999932 111 10
Q ss_pred hhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCcCC
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVTS 448 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~~~ 448 (550)
....+...+.|+.++++|+.++ ...|+++|.|+|+|+||.++..++.. ...+|+++|+.+|...
T Consensus 162 ~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 162 QEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp SSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred CCCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 0112333489999999999886 24799999999999999999888774 2468999999988643
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-11 Score=121.68 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=84.1
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccc--ccccchhHhHHHH-hCCcEEEEECCCCC-CCCchhhHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDS--WINTVDMRAQYLR-SKGILVWKLDNRGT-ARRGLKFEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~--~~~~~~~~~~~l~-~~G~~vv~~d~rG~-g~~~~~~~~~~~~ 386 (550)
+...+|.|.......+++||||++|||+........ +...+......|+ ..|++||.+|||.. -++...... .
T Consensus 81 l~lnv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~~~~---~ 157 (579)
T 2bce_A 81 LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDS---N 157 (579)
T ss_dssp CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSST---T
T ss_pred CEEEEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcCCCC---C
Confidence 455677786532123578999999998654321110 0000011134455 45799999999932 111000000 1
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCc
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPV 446 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~ 446 (550)
..+...+.|+.+|++|+.++ ...|++||.|+|+|+||+++..++.. ...+|+++|+.+|.
T Consensus 158 ~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 158 LPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred CCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 11223488999999999875 34799999999999999999888764 35689999988774
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-07 Score=92.27 Aligned_cols=192 Identities=9% Similarity=0.026 Sum_probs=110.7
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|+++|+++++.. .+....+.............+.|+|||+.++...... ...|+.+|.++++...........
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~--- 186 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK--ESVIWVVDGGNIKLKTAIQNTGKM--- 186 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS--SCEEEEEETTTTEEEEEECCCCTT---
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC--CceEEEEcCCCCceEEEecCCCCc---
Confidence 5789999998764 4444211100001112356789999999876664322 235999999998865543311110
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceee-ccccc----CeEEEEEEeEeecCCEEEEEEcCCCCc
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLG-PITEG----DWMVEQIVGVNEASGQVYFTGTLDGPL 212 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~----~~~~~~~~~~s~dg~~l~f~~~~~~~~ 212 (550)
+ ....+++++ .+++++.+ ..|+++|..+++.. .+..+ ....... .|+|||+.||+.....
T Consensus 187 --~------~~~~~s~dg~~l~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~--- 252 (353)
T 3vgz_A 187 --S------TGLALDSEGKRLYTTNAD--GELITIDTADNKILSRKKLLDDGKEHFFINI-SLDTARQRAFITDSKA--- 252 (353)
T ss_dssp --C------CCCEEETTTTEEEEECTT--SEEEEEETTTTEEEEEEECCCSSSCCCEEEE-EEETTTTEEEEEESSS---
T ss_pred --c------ceEEECCCCCEEEEEcCC--CeEEEEECCCCeEEEEEEcCCCCCCcccceE-EECCCCCEEEEEeCCC---
Confidence 0 001234544 66666553 47889998776543 33221 1122333 4999999998776443
Q ss_pred eeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 213 ESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 213 ~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
..|+.+++. .+. ....+.... ...+.++|||+++++.... ...+.++++.+++....+
T Consensus 253 -~~v~~~d~~-~~~----~~~~~~~~~-~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 253 -AEVLVVDTR-NGN----ILAKVAAPE-SLAVLFNPARNEAYVTHRQ---AGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp -SEEEEEETT-TCC----EEEEEECSS-CCCEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEEE
T ss_pred -CEEEEEECC-CCc----EEEEEEcCC-CceEEECCCCCEEEEEECC---CCeEEEEECCCCeEEEEE
Confidence 367778872 232 223333322 2446889999987665432 248999998877754443
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=118.23 Aligned_cols=127 Identities=18% Similarity=0.141 Sum_probs=85.6
Q ss_pred EEEEEEcC-----CCCCCCCCC----ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC-CCchhh
Q 008873 311 LYGALYKP-----DESRYGPPP----YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA-RRGLKF 380 (550)
Q Consensus 311 l~~~~~~P-----~~~~~~~~~----~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g-~~~~~~ 380 (550)
+...+|.| .... .++ +||||++|||+......... ......|+++|++||++|||... |+....
T Consensus 91 L~lnv~~P~~~~~~~~~--~~~~~~~~Pviv~iHGGg~~~g~~~~~----~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~~ 164 (551)
T 2fj0_A 91 IHANIHVPYYALPRDAA--DKNRFAGLPVLVFIHGGGFAFGSGDSD----LHGPEYLVSKDVIVITFNYRLNVYGFLSLN 164 (551)
T ss_dssp CEEEEEEEGGGCCCC----------CEEEEEEECCSTTTSCCSCTT----TCBCTTGGGGSCEEEEECCCCHHHHHCCCS
T ss_pred eEEEEEecCcccccccc--ccCcCCCCCEEEEEcCCccccCCCccc----ccCHHHHHhCCeEEEEeCCcCCccccccCc
Confidence 55667777 3321 133 89999999987543221110 11245677899999999999521 110000
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCc
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPV 446 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~ 446 (550)
. ....+...+.|+.++++|+.++ ...|+++|.|+|+|+||.+++.++.. .+.+|+++|+.+|.
T Consensus 165 ~---~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 232 (551)
T 2fj0_A 165 S---TSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGT 232 (551)
T ss_dssp S---SSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCC
T ss_pred c---cCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCC
Confidence 0 0112334589999999999876 34699999999999999999988875 35789999998885
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-09 Score=101.06 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=93.9
Q ss_pred ceEEEEEcCCCCceeecccccccch-hHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVD-MRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~-~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
.+.||++||...+.. . .|. .+.+.|.++||.|+.+|++|+|..... . ..+++.+.++.+.++
T Consensus 65 ~~pVVLvHG~~~~~~--~----~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~~~---~--------~~~~la~~I~~l~~~ 127 (316)
T 3icv_A 65 SKPILLVPGTGTTGP--Q----SFDSNWIPLSAQLGYTPCWISPPPFMLNDTQ---V--------NTEYMVNAITTLYAG 127 (316)
T ss_dssp SSEEEEECCTTCCHH--H----HHTTTHHHHHHHTTCEEEEECCTTTTCSCHH---H--------HHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCcH--H----HHHHHHHHHHHHCCCeEEEecCCCCCCCcHH---H--------HHHHHHHHHHHHHHH
Confidence 356788999655421 1 233 467889999999999999998754321 1 145677777777765
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhC---CCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCCh-hhhhh-
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSV-MHHVH- 481 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~- 481 (550)
. ..+++.|+||||||.++.+++..+ +++++.+|+++|...-........ . ++............|. +..+.
T Consensus 128 ~--g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~Gt~~a~l~~-~-~~~~~~a~~q~~~gS~fl~~Ln~ 203 (316)
T 3icv_A 128 S--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLD-A-LAVSAPSVWQQTTGSALTTALRN 203 (316)
T ss_dssp T--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBSCC--------CCCCHHHHHTBTTCHHHHHHHH
T ss_pred h--CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCCCchhhhhhh-h-ccccChhHHhhCCCCHHHHHHhh
Confidence 3 336899999999999998877764 588999999988654222111100 0 0000000000011111 12121
Q ss_pred ----cCCCcEEEEecCCCCCCChHH
Q 008873 482 ----KMKGKLLLVHGMIDENVHFRH 502 (550)
Q Consensus 482 ----~i~~P~lii~G~~D~~v~~~~ 502 (550)
.-.+|...|....|.+|.+..
T Consensus 204 ~~~~~~~v~~tsI~S~~D~iV~P~~ 228 (316)
T 3icv_A 204 AGGLTQIVPTTNLYSATDEIVQPQV 228 (316)
T ss_dssp TTTTBCSSCEEEEECTTCSSSCCCC
T ss_pred cCCCCCCCcEEEEEcCCCCCccCCc
Confidence 124789999999999997665
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=103.88 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=77.1
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
++.|.||++||..+....... ...|..+.+.|+++||.|+++|++|.|.+.... ...+++.+.++.+.+
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~-~~~w~~l~~~L~~~G~~V~~~d~~g~g~s~~~~----------~~~~~l~~~i~~~l~ 74 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGV-LEYWYGIQEDLQQRGATVYVANLSGFQSDDGPN----------GRGEQLLAYVKTVLA 74 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTT-EESSTTHHHHHHHTTCCEEECCCCSSCCSSSTT----------SHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccch-HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCCCC----------CCHHHHHHHHHHHHH
Confidence 345778999997655421100 013455688999999999999999998764311 113444444444443
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
+- +.+++.|+||||||.++..++.++|++++++|.+++..
T Consensus 75 ~~--~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 75 AT--GATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp HH--CCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred Hh--CCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 31 34689999999999999999999999999999988754
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=102.14 Aligned_cols=104 Identities=17% Similarity=0.128 Sum_probs=74.0
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|.||++||..+...... ...|..+.+.|+++||.|+++|++|.|.+... .+++.+.+..+.++
T Consensus 6 ~~~~vvlvHG~~~~~~~~~--~~~~~~~~~~L~~~G~~v~~~d~~g~g~s~~~-------------~~~~~~~i~~~~~~ 70 (285)
T 1ex9_A 6 TKYPIVLAHGMLGFDNILG--VDYWFGIPSALRRDGAQVYVTEVSQLDTSEVR-------------GEQLLQQVEEIVAL 70 (285)
T ss_dssp CSSCEEEECCTTCCSEETT--EESSTTHHHHHHHTTCCEEEECCCSSSCHHHH-------------HHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCCccccc--cccHHHHHHHHHhCCCEEEEEeCCCCCCchhh-------------HHHHHHHHHHHHHH
Confidence 4577899999765432111 11345568889999999999999998754311 23334444433332
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
- +.++|.|+||||||.++..++.++|++++++|..++..
T Consensus 71 ~--~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 S--GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp H--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred h--CCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 1 34689999999999999999999999999999988753
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-10 Score=115.57 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=79.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCC----CCCCchhhHH-HHhhccCCCchHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRG----TARRGLKFEA-SIKHNCGRIDAEDQLTG 399 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG----~g~~~~~~~~-~~~~~~~~~~~~D~~~~ 399 (550)
+++||||++|||+......... .+ ....|++ .|++||.+|||- .......+.. ......+...+.|+.++
T Consensus 139 ~~~PV~v~iHGGg~~~g~~~~~--~~--~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~a 214 (585)
T 1dx4_A 139 NGLPILIWIYGGGFMTGSATLD--IY--NADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALA 214 (585)
T ss_dssp SSEEEEEEECCSTTTCCCTTCG--GG--CCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHH
T ss_pred CCCCEEEEECCCcccCCCCCCC--CC--CchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHH
Confidence 5789999999987654322111 11 2345554 799999999992 1111111000 01111233458999999
Q ss_pred HHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcC
Q 008873 400 AEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 447 (550)
Q Consensus 400 ~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~ 447 (550)
++|+.+. ...|+++|.|+|+|+||+++..++... ..+|+++|+.+|..
T Consensus 215 l~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 215 IRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 9999886 246999999999999999998877642 36899999988753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=7.9e-08 Score=93.31 Aligned_cols=168 Identities=7% Similarity=-0.035 Sum_probs=98.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+++|+++++....... .......+.|+|||+.++.... ...|+.+|.++++...........
T Consensus 165 ~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~---- 228 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQN--------TGKMSTGLALDSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDG---- 228 (353)
T ss_dssp EEEEEETTTTEEEEEECC--------CCTTCCCCEEETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSS----
T ss_pred eEEEEcCCCCceEEEecC--------CCCccceEEECCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCC----
Confidence 578999998876543110 1112345789999998776643 235889999999865544321110
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
+...+ ....+++++ .+|+++. +...|+++|..+++. +.+..+.- .. ..+++||+.+|+....++ .|+
T Consensus 229 -~~~~~--~~~~~s~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~--~~-~~~s~dg~~l~v~~~~~~----~v~ 297 (353)
T 3vgz_A 229 -KEHFF--INISLDTARQRAFITDS-KAAEVLVVDTRNGNILAKVAAPES--LA-VLFNPARNEAYVTHRQAG----KVS 297 (353)
T ss_dssp -SCCCE--EEEEEETTTTEEEEEES-SSSEEEEEETTTCCEEEEEECSSC--CC-EEEETTTTEEEEEETTTT----EEE
T ss_pred -CCccc--ceEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEEEEEcCCC--ce-EEECCCCCEEEEEECCCC----eEE
Confidence 00000 000234444 5666653 335799999876653 33333321 12 348999999888765543 567
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecC
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~ 259 (550)
.+++. .+. ....+........+.|+|||+++++....
T Consensus 298 ~~d~~-~~~----~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 298 VIDAK-SYK----VVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEETT-TTE----EEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEECC-CCe----EEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 77872 222 23344444446667899999987776654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-08 Score=95.05 Aligned_cols=210 Identities=10% Similarity=-0.024 Sum_probs=119.5
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEE-EEcccCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGT 81 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~ 81 (550)
...++.|||||++|++........+. ........|+++|+++++... +..
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~------------------------~~~~~~~~i~v~d~~~~~~~~~~~~----- 133 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELT------------------------HFEVQPTRVALYDAETLSRRKAFEA----- 133 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSS------------------------CEEECCCEEEEEETTTTEEEEEEEC-----
T ss_pred cccceEECCCCCEEEEEecccccccc------------------------cccccCceEEEEECCCCcEEEEEeC-----
Confidence 34678999999998876432100000 000001368999999887643 322
Q ss_pred CCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEE
Q 008873 82 DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWA 160 (550)
Q Consensus 82 ~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (550)
......+.|||||+.+++. + ..|+++++++++......... |. . +. .+++++ .++.
T Consensus 134 -----~~~~~~~~~s~dg~~l~~~-~-----~~i~~~d~~~~~~~~~~~~~~--~~-~-----~~----~~s~dg~~l~~ 190 (337)
T 1pby_B 134 -----PRQITMLAWARDGSKLYGL-G-----RDLHVMDPEAGTLVEDKPIQS--WE-A-----ET----YAQPDVLAVWN 190 (337)
T ss_dssp -----CSSCCCEEECTTSSCEEEE-S-----SSEEEEETTTTEEEEEECSTT--TT-T-----TT----BCCCBCCCCCC
T ss_pred -----CCCcceeEECCCCCEEEEe-C-----CeEEEEECCCCcEeeeeeccc--cC-C-----Cc----eeCCCccEEee
Confidence 1123457899999977666 1 239999999998654332211 10 0 00 122222 1221
Q ss_pred Ecc-CC---------------------ccEEEEEeCCCceeeccccc--CeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 161 SEK-TG---------------------FRHLYLHDINGTCLGPITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 161 s~~-~g---------------------~~~l~~~~~~~~~~~~lT~~--~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
+.. .+ ...|+++++.+++.+.++.. ....... .|+|||+.||+. + ..|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~-~------~~v 262 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST-AVNPAKTRAFGA-Y------NVL 262 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE-EECTTSSEEEEE-E------SEE
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeE-EECCCCCEEEEe-C------CeE
Confidence 111 11 12689999888765533321 1122233 499999998877 1 367
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
+.+++. .+. ....+........+.|+|||++++.. +. ...+.++++.+++.+..+.
T Consensus 263 ~~~d~~-~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~-~~---~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 263 ESFDLE-KNA----SIKRVPLPHSYYSVNVSTDGSTVWLG-GA---LGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEEETT-TTE----EEEEEECSSCCCEEEECTTSCEEEEE-SB---SSEEEEEETTTCCEEEEEE
T ss_pred EEEECC-CCc----CcceecCCCceeeEEECCCCCEEEEE-cC---CCcEEEEECcCCcEEEEEE
Confidence 777872 221 22333333345677899999987664 22 3589999998888665553
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4.2e-10 Score=108.16 Aligned_cols=195 Identities=12% Similarity=0.067 Sum_probs=107.6
Q ss_pred EEEEEcC--CCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc----hhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 330 TLISVYG--GPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG----LKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 330 ~vv~~hG--g~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~----~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
.|+++|| +++... .|..+...|. .++.|+.+|.+|.|.+. ......+ ..+ .+|+.+.++.+
T Consensus 91 ~l~~~hg~g~~~~~~-------~~~~l~~~L~-~~~~v~~~d~~G~g~~~~~~~~~~~~~~-~~~----a~~~~~~i~~~ 157 (319)
T 2hfk_A 91 VLVGCTGTAANGGPH-------EFLRLSTSFQ-EERDFLAVPLPGYGTGTGTGTALLPADL-DTA----LDAQARAILRA 157 (319)
T ss_dssp EEEEECCCCTTCSTT-------TTHHHHHTTT-TTCCEEEECCTTCCBC---CBCCEESSH-HHH----HHHHHHHHHHH
T ss_pred cEEEeCCCCCCCcHH-------HHHHHHHhcC-CCCceEEecCCCCCCCcccccCCCCCCH-HHH----HHHHHHHHHHh
Confidence 7888997 333321 2333445454 68999999999998651 1100000 000 23333333332
Q ss_pred HHcCCCCCCceEEEEechhHHHHHHHHhhC----CCeeEEEEEcCCcCCccc--ccch---hhhhccC---CCCCC--c-
Q 008873 404 IKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAPVTSWDG--YDTF---YTEKYMG---LPSED--P- 468 (550)
Q Consensus 404 ~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~~~~~~~v~~~~~~~~~~--~~~~---~~~~~~g---~~~~~--~- 468 (550)
. ...++.++|||+||.++..++.+. ++.++.+++.++...... ...+ ..+..+. .+... .
T Consensus 158 ~-----~~~p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 232 (319)
T 2hfk_A 158 A-----GDAPVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLL 232 (319)
T ss_dssp H-----TTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHH
T ss_pred c-----CCCCEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHH
Confidence 2 235799999999999999998875 456778877765432110 0000 0000000 00000 0
Q ss_pred --cccccCChhhhhhcCCCcEEEEecCCCCCCChHH-HHHHHHHHHHc-CCCeEEEEcCCCCCcCCCCCcHHHHHHHHHH
Q 008873 469 --VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRH-TARLINALVAA-RKPYEILIFPDERHMPRRHRDRIYMEERIWE 544 (550)
Q Consensus 469 --~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~-~~~~~~~l~~~-~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~ 544 (550)
..|...........+++|+++++| .|..+++.. ...+ ... ..+++++.+| ++|.....++...+.+.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~~~~~~~~~----~~~~~~~~~~~~v~-g~H~~~~~e~~~~~~~~i~~ 306 (319)
T 2hfk_A 233 AMGRYARFLAGPRPGRSSAPVLLVRA-SEPLGDWQEERGDW----RAHWDLPHTVADVP-GDHFTMMRDHAPAVAEAVLS 306 (319)
T ss_dssp HHHHHHHHHHSCCCCCCCSCEEEEEE-SSCSSCCCGGGCCC----SCCCSSCSEEEEES-SCTTHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCCCEEEEEc-CCCCCCccccccch----hhcCCCCCEEEEeC-CCcHHHHHHhHHHHHHHHHH
Confidence 001000000113567899999999 999888664 2222 111 2357888999 58974222367788899999
Q ss_pred HHHH
Q 008873 545 FIER 548 (550)
Q Consensus 545 fl~~ 548 (550)
||.+
T Consensus 307 ~L~~ 310 (319)
T 2hfk_A 307 WLDA 310 (319)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9975
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-07 Score=91.28 Aligned_cols=167 Identities=9% Similarity=-0.003 Sum_probs=86.8
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCC----c-eEEE----EEeecCceeeccCccccCCCCCccCCCc-EEE
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG----Q-RKVI----LVEELDSWVNLHDCFTPLDKGVTKYSGG-FIW 159 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g----~-~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (550)
...++|||||+.+++.. ...+...+|.++..++ + .... .........+. ...+++|+ +++
T Consensus 157 ~~~~~~spdg~~l~~~~-~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~spdg~~l~ 226 (361)
T 3scy_A 157 LHCVRITPDGKYLLADD-LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPR---------HLIFNSDGKFAY 226 (361)
T ss_dssp EEEEEECTTSSEEEEEE-TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEE---------EEEECTTSSEEE
T ss_pred ceEEEECCCCCEEEEEe-CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCe---------EEEEcCCCCEEE
Confidence 35689999999776654 3334445677676665 3 2211 10111110000 01345555 666
Q ss_pred EEcc-CCccEEEEEeCCCceeecccc------cCeEEEEEEeEeecCCEEEEEEcC-CCCceeEEEEEEeCCCCCCCCCC
Q 008873 160 ASEK-TGFRHLYLHDINGTCLGPITE------GDWMVEQIVGVNEASGQVYFTGTL-DGPLESHLYCAKLYPDWNHTLEA 231 (550)
Q Consensus 160 ~s~~-~g~~~l~~~~~~~~~~~~lT~------~~~~~~~~~~~s~dg~~l~f~~~~-~~~~~~~l~~v~~~~~g~~~~~~ 231 (550)
++.. ++ .|.++++++++.+.+.. +......+ .|||||+.||+.... .+ ...+|.++.. ++.. ..
T Consensus 227 v~~~~~~--~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i-~~spdg~~l~v~~~~~~~--~i~v~~~~~~-~g~~--~~ 298 (361)
T 3scy_A 227 LINEIGG--TVIAFRYADGMLDEIQTVAADTVNAQGSGDI-HLSPDGKYLYASNRLKAD--GVAIFKVDET-NGTL--TK 298 (361)
T ss_dssp EEETTTC--EEEEEEEETTEEEEEEEEESCSSCCCCEEEE-EECTTSSEEEEEECSSSC--EEEEEEECTT-TCCE--EE
T ss_pred EEcCCCC--eEEEEEecCCceEEeEEEecCCCCCCCcccE-EECCCCCEEEEECCCCCC--EEEEEEEcCC-CCcE--EE
Confidence 6553 33 46666655555433321 11112334 499999998876654 33 3667766531 2220 01
Q ss_pred CeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 232 PVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 232 ~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
...+..+.....++|||||++|++..... .--.+|.++.++|+
T Consensus 299 ~~~~~~g~~~~~~~~spdg~~l~~~~~~~-~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 299 VGYQLTGIHPRNFIITPNGKYLLVACRDT-NVIQIFERDQATGL 341 (361)
T ss_dssp EEEEECSSCCCEEEECTTSCEEEEEETTT-TEEEEEEECTTTCC
T ss_pred eeEecCCCCCceEEECCCCCEEEEEECCC-CCEEEEEEECCCCc
Confidence 12222222345678999999887665432 22245557776776
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.95 E-value=8.3e-10 Score=106.52 Aligned_cols=195 Identities=13% Similarity=0.038 Sum_probs=110.3
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHH-HHHHHHc
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLIKQ 406 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~ 406 (550)
.|.|+++||.++... .|..+...| ..++.|+.+|.+|.+.+... ...++++.+. ++.+.+.
T Consensus 101 ~~~l~~lhg~~~~~~-------~~~~l~~~L-~~~~~v~~~d~~g~~~~~~~----------~~~~~~~a~~~~~~i~~~ 162 (329)
T 3tej_A 101 GPTLFCFHPASGFAW-------QFSVLSRYL-DPQWSIIGIQSPRPNGPMQT----------AANLDEVCEAHLATLLEQ 162 (329)
T ss_dssp SCEEEEECCTTSCCG-------GGGGGGGTS-CTTCEEEEECCCTTTSHHHH----------CSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCcccch-------HHHHHHHhc-CCCCeEEEeeCCCCCCCCCC----------CCCHHHHHHHHHHHHHHh
Confidence 367889999766533 233344545 56899999999998653210 0123333332 3333332
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhh---CCCeeEEEEEcCCcCCccc---------cc-chh------hhhcc-C-CCC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAPVTSWDG---------YD-TFY------TEKYM-G-LPS 465 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~---~~~~~~~~v~~~~~~~~~~---------~~-~~~------~~~~~-g-~~~ 465 (550)
. ...++.++||||||.++..++.+ +++.++.++..++...... .. ... ...+. . ...
T Consensus 163 ~--~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (329)
T 3tej_A 163 Q--PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGS 240 (329)
T ss_dssp C--SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCC
T ss_pred C--CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhcccc
Confidence 1 23589999999999999999988 8999999998876543210 00 000 00000 0 000
Q ss_pred CCccccccC--------Chh--hhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc-CCCCCc
Q 008873 466 EDPVGYEYS--------SVM--HHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM-PRRHRD 534 (550)
Q Consensus 466 ~~~~~~~~~--------~~~--~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~-~~~~~~ 534 (550)
...+.+... ..+ .....+.+|++++.|+.|..++......+ ...-.+++++.++ ++|. +.....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~~~~d~~~~~~~~~~w----~~~~~~~~~~~v~-g~H~~~~~~~~ 315 (329)
T 3tej_A 241 TSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAW----SPWIAELDIYRQD-CAHVDIISPGT 315 (329)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEGGGCCTTCCHHHHH----TTTEEEEEEEEES-SCGGGGGSTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEeccCCCCCCCchhhH----HHhcCCcEEEEec-CChHHhCCChH
Confidence 001110000 000 01234567999999999987765543332 2222467888888 4675 334444
Q ss_pred HHHHHHHHHHHHH
Q 008873 535 RIYMEERIWEFIE 547 (550)
Q Consensus 535 ~~~~~~~~~~fl~ 547 (550)
...+...+.+||.
T Consensus 316 ~~~ia~~l~~~L~ 328 (329)
T 3tej_A 316 FEKIGPIIRATLN 328 (329)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 4566666777663
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-07 Score=88.91 Aligned_cols=186 Identities=6% Similarity=-0.105 Sum_probs=109.2
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EE-EEEeecCcee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KV-ILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~-l~~~~~~~~~ 137 (550)
.|.++|+++++....... . .... .++|||||+.++...... ..|+++++++++. .. +.....+..
T Consensus 21 ~v~~~d~~~~~~~~~~~~-------~-~~~~-~~~~s~dg~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~- 87 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITL-------G-YDFV-DTAITSDCSNVVVTSDFC---QTLVQIETQLEPPKVVAIQEGQSSMA- 87 (331)
T ss_dssp EEEEEETTTCCEEEEEEC-------C-CCEE-EEEECSSSCEEEEEESTT---CEEEEEECSSSSCEEEEEEECSSCCC-
T ss_pred eEEEEeCcccceeeeEEc-------c-CCcc-eEEEcCCCCEEEEEeCCC---CeEEEEECCCCceeEEecccCCCCcc-
Confidence 578899999887543221 1 2233 789999999776665432 2699999999985 32 222211111
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccC-CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKT-GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~-g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
. ..+++++ +++.+... +...|+++++++++.............. .|+|||+.||+.....+. ...
T Consensus 88 ------~-----~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~spdg~~l~~~~~~~~~-~i~ 154 (331)
T 3u4y_A 88 ------D-----VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGI-AISPNGNGLILIDRSSAN-TVR 154 (331)
T ss_dssp ------C-----EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEE-EECTTSSCEEEEEETTTT-EEE
T ss_pred ------c-----eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccce-EECCCCCEEEEEecCCCc-eEE
Confidence 0 0234544 55554443 3348999998877654333222122334 499999988887665431 144
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
+|.++. ++.......+.+..+.+...+.|+|||++++++... ...++++++.+++.
T Consensus 155 ~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 155 RFKIDA--DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI---GNSIGILETQNPEN 210 (331)
T ss_dssp EEEECT--TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT---TTEEEEEECSSTTS
T ss_pred EEEECC--CCcEeecCCccccCCCCccceEECCCCCEEEEEeCC---CCeEEEEECCCCcc
Confidence 554432 332100002233334456777999999987666533 24799999887775
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=107.89 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCceeecccccccchh-HhHH-HHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDM-RAQY-LRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~-~~~~-l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
...|+||++||...+.. ..| .. ++.. ++..+|.|+++|++|+|.+............ .+++.+.+++|
T Consensus 67 ~~~p~vvliHG~~~s~~--~~w----~~~l~~~ll~~~~~~VI~vD~~g~g~s~y~~~~~~~~~v----~~~la~ll~~L 136 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKGE--ESW----LSTMCQNMFKVESVNCICVDWKSGSRTAYSQASQNVRIV----GAEVAYLVGVL 136 (449)
T ss_dssp TTSEEEEEECCCCCTTC--TTH----HHHHHHHHHHHCCEEEEEEECHHHHSSCHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCC--ccH----HHHHHHHHHhcCCeEEEEEeCCcccCCccHHHHHHHHHH----HHHHHHHHHHH
Confidence 34589999999654421 122 22 2333 4567999999999998765421110111111 35677778887
Q ss_pred HHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 404 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 404 ~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
.++..++.+++.|+||||||++|..++.++|++++.++...|..
T Consensus 137 ~~~~g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 137 QSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp HHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred HHhcCCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 65434567899999999999999999999999999998877653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-07 Score=88.67 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=85.3
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECC-CCceEEEEEeecC-ceeeccCccccCCCCCccCCCc-EEEEEc-cC
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQRKVILVEELD-SWVNLHDCFTPLDKGVTKYSGG-FIWASE-KT 164 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~-~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~s~-~~ 164 (550)
....++|||||+ ++ +.+...+ .|++++++ +|+...+...... ...+.+ + .+++|+ +++++. .+
T Consensus 142 ~~~~~~~spdg~-l~-v~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~g~~p~~--~-------~~spdg~~l~v~~~~~ 208 (347)
T 3hfq_A 142 HIHYTDLTPDNR-LA-VIDLGSD--KVYVYNVSDAGQLSEQSVLTMEAGFGPRH--L-------VFSPDGQYAFLAGELS 208 (347)
T ss_dssp CEEEEEECTTSC-EE-EEETTTT--EEEEEEECTTSCEEEEEEEECCTTCCEEE--E-------EECTTSSEEEEEETTT
T ss_pred CceEEEECCCCc-EE-EEeCCCC--EEEEEEECCCCcEEEeeeEEcCCCCCCce--E-------EECCCCCEEEEEeCCC
Confidence 356689999999 44 3444333 35566655 6766554432111 100000 1 245554 555544 34
Q ss_pred CccEEEEEeCCCceeecccc-----cC----eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee
Q 008873 165 GFRHLYLHDINGTCLGPITE-----GD----WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL 235 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~-----~~----~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l 235 (550)
+.-.+|.++..+++.+.+.. .. .....+ .|+|||+.||++...++ ...+|.++. +|.. .....+
T Consensus 209 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-~~spdG~~l~v~~~~~~--~v~v~~~~~--~g~~--~~~~~~ 281 (347)
T 3hfq_A 209 SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI-RLSHDGHFLYVSNRGYN--TLAVFAVTA--DGHL--TLIQQI 281 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE-EECTTSCEEEEEEETTT--EEEEEEECG--GGCE--EEEEEE
T ss_pred CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE-EECCCCCEEEEEeCCCC--EEEEEEECC--CCcE--EEeEEE
Confidence 44455655554455433221 11 223344 49999999988766543 245554432 2310 112223
Q ss_pred CC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 236 TN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 236 t~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.. +.....++|||||++|+...... ..-.+|.++.++|+
T Consensus 282 ~~~~~~~~~~~~spdg~~l~v~~~~~-~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 282 STEGDFPRDFDLDPTEAFVVVVNQNT-DNATLYARDLTSGK 321 (347)
T ss_dssp ECSSSCCCEEEECTTSSEEEEEETTT-TEEEEEEECTTTCC
T ss_pred ecCCCCcCeEEECCCCCEEEEEEcCC-CcEEEEEEeCCCCe
Confidence 32 22345678999999876654432 22245555666676
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=105.55 Aligned_cols=115 Identities=13% Similarity=0.002 Sum_probs=74.5
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH--hhccCC----CchHHHHHHH
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI--KHNCGR----IDAEDQLTGA 400 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~--~~~~~~----~~~~D~~~~~ 400 (550)
..|+ |++|||++.... .+. ....+..+....|+.|+++|+||+|.+...-.... ..+++. ..++|+...+
T Consensus 38 g~Pi-~l~~Ggeg~~~~--~~~-~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~~ 113 (446)
T 3n2z_B 38 GGSI-LFYTGNEGDIIW--FCN-NTGFMWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELI 113 (446)
T ss_dssp TCEE-EEEECCSSCHHH--HHH-HCHHHHHHHHHHTEEEEEECCTTSTTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHHH
T ss_pred CCCE-EEEeCCCCcchh--hhh-cccHHHHHHHHhCCcEEEEecCCCCCCCCCCccccccchhhccCCHHHHHHHHHHHH
Confidence 3475 556888775321 110 01112333345689999999999998853111000 012221 2367888888
Q ss_pred HHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCC
Q 008873 401 EWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP 445 (550)
Q Consensus 401 ~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~ 445 (550)
+++..+ ......++.++||||||.++++++.++|+++.++|+.++
T Consensus 114 ~~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssa 159 (446)
T 3n2z_B 114 KHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159 (446)
T ss_dssp HHHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEecc
Confidence 888765 222446899999999999999999999999999888654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-06 Score=83.80 Aligned_cols=179 Identities=7% Similarity=-0.047 Sum_probs=103.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+++++......- ......+..+.|+|||+.++...... .|.+.++.+++.......... .+..
T Consensus 120 ~i~~~d~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~~~~~~~~~~~-~i~~ 188 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAEL------TSSAPACYALAISPDSKVCFSCCSDG----NIAVWDLHNQTLVRQFQGHTD-GASC 188 (337)
T ss_dssp EEEEEECCCC--EEEEEE------ECSSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTTEEEEEECCCSS-CEEE
T ss_pred cEEEEECCCCCcceeeec------ccCCCceEEEEECCCCCEEEEEeCCC----cEEEEeCCCCceeeeeecccC-ceEE
Confidence 468889998764322111 12244577899999999887765433 388889988875443321111 1100
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
+ .+++++ +++....+| .|++++..+++..........+... .|+|+++.|+..+... .|+.
T Consensus 189 ---~-------~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~~~-----~i~~ 250 (337)
T 1gxr_A 189 ---I-------DISNDGTKLWTGGLDN--TVRSWDLREGRQLQQHDFTSQIFSL-GYCPTGEWLAVGMESS-----NVEV 250 (337)
T ss_dssp ---E-------EECTTSSEEEEEETTS--EEEEEETTTTEEEEEEECSSCEEEE-EECTTSSEEEEEETTS-----CEEE
T ss_pred ---E-------EECCCCCEEEEEecCC--cEEEEECCCCceEeeecCCCceEEE-EECCCCCEEEEEcCCC-----cEEE
Confidence 1 234444 555544444 5778887766544333333334444 4999998888765542 3444
Q ss_pred EEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 219 AKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
.++ ... +...+... .....+.|+|+++.++....+ ..+.+.++.+++..
T Consensus 251 ~~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 251 LHV--NKP----DKYQLHLHESCVLSLKFAYCGKWFVSTGKD----NLLNAWRTPYGASI 300 (337)
T ss_dssp EET--TSS----CEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTCCEE
T ss_pred EEC--CCC----CeEEEcCCccceeEEEECCCCCEEEEecCC----CcEEEEECCCCeEE
Confidence 566 222 23344332 346777999999987655432 47888888777644
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-09 Score=103.41 Aligned_cols=113 Identities=11% Similarity=0.017 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCcee-------ecccccccchhHhHHHHhCCcE---EEEECCCCCCCCchhhHHHHhhccCCCchHHHHH
Q 008873 329 KTLISVYGGPCVQL-------VCDSWINTVDMRAQYLRSKGIL---VWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT 398 (550)
Q Consensus 329 P~vv~~hGg~~~~~-------~~~~~~~~~~~~~~~l~~~G~~---vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~ 398 (550)
+.||++||...... ....|......+.+.|.++||. |+++|++|.|.+..... ........+++.+
T Consensus 41 ~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g~G~S~~~~~----~~~~~~~~~~l~~ 116 (342)
T 2x5x_A 41 TPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSSEQGSAQY----NYHSSTKYAIIKT 116 (342)
T ss_dssp CCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSCHHHHTCGGG----CCBCHHHHHHHHH
T ss_pred CeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCCCCccCCccc----cCCHHHHHHHHHH
Confidence 44778999765321 0112200004568889999998 99999999864321100 0001112567777
Q ss_pred HHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcC
Q 008873 399 GAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 447 (550)
Q Consensus 399 ~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~ 447 (550)
.++.+.++. ..++|.|+||||||.++..++.++ |++++.+|+++|..
T Consensus 117 ~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~ 165 (342)
T 2x5x_A 117 FIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGI 165 (342)
T ss_dssp HHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCT
T ss_pred HHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCc
Confidence 777776653 236899999999999999999987 88999999988764
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-09 Score=110.24 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=83.3
Q ss_pred EEEEEEcCCCCCC--CCCCceEEEEEcCCCCceeecccccccchhHhHHHHh-CCcEEEEECCCCCC----CCchhhHHH
Q 008873 311 LYGALYKPDESRY--GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS-KGILVWKLDNRGTA----RRGLKFEAS 383 (550)
Q Consensus 311 l~~~~~~P~~~~~--~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~-~G~~vv~~d~rG~g----~~~~~~~~~ 383 (550)
|...+|.|..... ..+++||||++|||+........ ++ ...|++ .|++||++|||... ..+..
T Consensus 112 L~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~----~~--~~~la~~~~~vvv~~~YRl~~~Gfl~~~~~---- 181 (574)
T 3bix_A 112 LYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNL----YD--GSVLASYGNVIVITVNYRLGVLGFLSTGDQ---- 181 (574)
T ss_dssp CEEEEEEEC--------CCEEEEEECCCSSSSSCCGGG----SC--CHHHHHHHTCEEEEECCCCHHHHHCCCSSS----
T ss_pred CEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCc----cC--chhhhccCCEEEEEeCCcCcccccCcCCCC----
Confidence 5567788865311 12578999999998765432221 11 244555 47999999999421 11100
Q ss_pred HhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCc
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPV 446 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~ 446 (550)
...+...+.|+.++++|+.++ ...|+++|.|+|+|.||.++..++.... .+|+.+|+.+|.
T Consensus 182 --~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 182 --AAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp --SCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 011233489999999999885 3479999999999999999988887542 579999988763
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.4e-07 Score=89.21 Aligned_cols=180 Identities=6% Similarity=-0.123 Sum_probs=107.2
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC----CceEEEEEECCCCceEEEEEeecCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ----TKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~----~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
.|+++|+.+++.... + ........++|+|||+.++....... ....|+++++.+++...........
T Consensus 235 ~i~~~d~~~~~~~~~-~--------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 305 (433)
T 3bws_A 235 DISVIDRKTKLEIRK-T--------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK 305 (433)
T ss_dssp EEEEEETTTTEEEEE-C--------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE
T ss_pred cEEEEECCCCcEEEE-e--------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc
Confidence 478899998876433 1 22345778999999998777654322 2347999999998765554332211
Q ss_pred eeeccCccccCCCCCccCCCc-EEEEE-ccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCc-
Q 008873 136 WVNLHDCFTPLDKGVTKYSGG-FIWAS-EKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL- 212 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-~~~~s-~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~- 212 (550)
. .. .+++++ .++++ ..+ ..|+++++++++..........+... .|+++|+.|++.....+..
T Consensus 306 ~-----~~-------~~~~~g~~l~~~~~~~--~~v~v~d~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 306 R-----HI-------VSGNTENKIYVSDMCC--SKIEVYDLKEKKVQKSIPVFDKPNTI-ALSPDGKYLYVSCRGPNHPT 370 (433)
T ss_dssp E-----EE-------EECSSTTEEEEEETTT--TEEEEEETTTTEEEEEEECSSSEEEE-EECTTSSEEEEEECCCCCTT
T ss_pred c-----eE-------EECCCCCEEEEEecCC--CEEEEEECCCCcEEEEecCCCCCCeE-EEcCCCCEEEEEecCCCccc
Confidence 0 01 234444 55544 333 47888888776544322222234444 4999999998887653211
Q ss_pred ---------eeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 213 ---------ESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 213 ---------~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
...|+.+++. .+. ....+........+.|+|||++++...+.. ..+.++++
T Consensus 371 ~~~~~~g~~dg~v~~~d~~-~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d---~~i~v~~~ 430 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTT-TDT----VKEFWEAGNQPTGLDVSPDNRYLVISDFLD---HQIRVYRR 430 (433)
T ss_dssp TCTTSCCSSCCEEEEEETT-TTE----EEEEEECSSSEEEEEECTTSCEEEEEETTT---TEEEEEEE
T ss_pred cccccccccceEEEEEECC-CCc----EEEEecCCCCCceEEEcCCCCEEEEEECCC---CeEEEEEe
Confidence 1367888872 221 223333334467779999999886654321 36666665
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-07 Score=89.63 Aligned_cols=195 Identities=8% Similarity=-0.027 Sum_probs=96.3
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
..|++||+++++.+.+... .........++|||||+.++...... +.-.+|.++. +|+.+.+.......-.+
T Consensus 63 ~~v~~~~~~~g~~~~~~~~------~~~~~~p~~~a~spdg~~l~~~~~~~-~~v~v~~~~~-~g~~~~~~~~~~~~~~p 134 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTV------VAPGTPPAYVAVDEARQLVYSANYHK-GTAEVMKIAA-DGALTLTDTVQHSGHGP 134 (347)
T ss_dssp EEEEEEEEETTEEEEEEEE------EEESCCCSEEEEETTTTEEEEEETTT-TEEEEEEECT-TSCEEEEEEEECCCCCS
T ss_pred ceEEEEEecCCcEEEeeee------ecCCCCCEEEEECCCCCEEEEEeCCC-CEEEEEEeCC-CCCeeecceeecCCCCC
Confidence 4678999988876655331 00122345678999999887765332 2334444433 55655554432211000
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCC-Cceeeccc-----ccCeEEEEEEeEeecCCEEEEEEcCCCCc
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN-GTCLGPIT-----EGDWMVEQIVGVNEASGQVYFTGTLDGPL 212 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~-~~~~~~lT-----~~~~~~~~~~~~s~dg~~l~f~~~~~~~~ 212 (550)
.............+++++=+++++. +...|++++++ +++...+. .+.. .... .|+|||+.||+.....+
T Consensus 135 ~~~~~~~~~~~~~~spdg~l~v~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~g~~-p~~~-~~spdg~~l~v~~~~~~-- 209 (347)
T 3hfq_A 135 RPEQDGSHIHYTDLTPDNRLAVIDL-GSDKVYVYNVSDAGQLSEQSVLTMEAGFG-PRHL-VFSPDGQYAFLAGELSS-- 209 (347)
T ss_dssp STTCSSCCEEEEEECTTSCEEEEET-TTTEEEEEEECTTSCEEEEEEEECCTTCC-EEEE-EECTTSSEEEEEETTTT--
T ss_pred CccccCCCceEEEECCCCcEEEEeC-CCCEEEEEEECCCCcEEEeeeEEcCCCCC-CceE-EECCCCCEEEEEeCCCC--
Confidence 0000000000012344442445543 22356666655 44433222 1211 2233 59999999998776544
Q ss_pred eeEEEEEEeCCCCCCCCCCCeeeCC-C------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 213 ESHLYCAKLYPDWNHTLEAPVKLTN-G------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 213 ~~~l~~v~~~~~g~~~~~~~~~lt~-~------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
...+|.++.. .+.. .....+.. . .....+.|||||++|+++... ...+.++++.
T Consensus 210 ~v~v~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~---~~~v~v~~~~ 270 (347)
T 3hfq_A 210 QIASLKYDTQ-TGAF--TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG---YNTLAVFAVT 270 (347)
T ss_dssp EEEEEEEETT-TTEE--EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET---TTEEEEEEEC
T ss_pred EEEEEEecCC-CCce--EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC---CCEEEEEEEC
Confidence 3556655531 1210 00111111 1 225567899999987665443 2467777764
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=105.11 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=74.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
...|+||++||...+.. ..|. ..+...|. ..+|.|+++|++|.|.+............ .+|+.+.+++|.
T Consensus 68 ~~~p~vvliHG~~~s~~--~~w~---~~l~~~ll~~~~~~VI~vD~~g~g~s~y~~~~~~~~~~----a~~l~~ll~~L~ 138 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKGE--ENWL---LDMCKNMFKVEEVNCICVDWKKGSQTSYTQAANNVRVV----GAQVAQMLSMLS 138 (450)
T ss_dssp TTSEEEEEECCCCCTTC--TTHH---HHHHHHHTTTCCEEEEEEECHHHHSSCHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred CCCCeEEEEccCCCCCC--cchH---HHHHHHHHhcCCeEEEEEeCccccCCcchHHHHHHHHH----HHHHHHHHHHHH
Confidence 34689999999654421 1221 11233344 45899999999997654311111111111 456777788876
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
++..++.+++.|+||||||++|..++.++|+ ++.++...|..
T Consensus 139 ~~~g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 139 ANYSYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp HHHCCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred HhcCCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 4433467899999999999999999999999 88888877653
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.2e-07 Score=88.91 Aligned_cols=195 Identities=10% Similarity=0.040 Sum_probs=107.8
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
+.+.|||||++||....... ..|.+||+++++.... +.
T Consensus 137 ~~v~fSpDg~~la~as~~~d----------------------------------~~i~iwd~~~~~~~~~-~~------- 174 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKVP----------------------------------AIMRIIDPSDLTEKFE-IE------- 174 (365)
T ss_dssp EEEEECTTSSCEEEEESCSS----------------------------------CEEEEEETTTTEEEEE-EE-------
T ss_pred EEEEEcCCCCEEEEEECCCC----------------------------------CEEEEeECCCCcEEEE-eC-------
Confidence 56889999999987653311 2468899999876432 21
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc-eeeccCccccCCCCCccCCCc--EEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS-WVNLHDCFTPLDKGVTKYSGG--FIWAS 161 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~s 161 (550)
....+..++|||||++++..... .+.+++..+|+........... .+.. . .+++++ ++..+
T Consensus 175 -~~~~V~~v~fspdg~~l~s~s~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~---v-------~fspdg~~l~~~s 238 (365)
T 4h5i_A 175 -TRGEVKDLHFSTDGKVVAYITGS-----SLEVISTVTGSCIARKTDFDKNWSLSK---I-------NFIADDTVLIAAS 238 (365)
T ss_dssp -CSSCCCEEEECTTSSEEEEECSS-----CEEEEETTTCCEEEEECCCCTTEEEEE---E-------EEEETTEEEEEEE
T ss_pred -CCCceEEEEEccCCceEEeccce-----eEEEEEeccCcceeeeecCCCCCCEEE---E-------EEcCCCCEEEEEe
Confidence 12346789999999988877532 2667777777654322221111 1110 1 123444 33333
Q ss_pred ccCC-ccEEEEEeCCCcee-----ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee
Q 008873 162 EKTG-FRHLYLHDINGTCL-----GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL 235 (550)
Q Consensus 162 ~~~g-~~~l~~~~~~~~~~-----~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l 235 (550)
..++ ...++..+...... +.+......+... .|||||+.|+..+.+.. ..|| ++. .+. ....+
T Consensus 239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~Spdg~~lasgs~D~~---V~iw--d~~-~~~----~~~~~ 307 (365)
T 4h5i_A 239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM-DVDMKGELAVLASNDNS---IALV--KLK-DLS----MSKIF 307 (365)
T ss_dssp ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE-EECTTSCEEEEEETTSC---EEEE--ETT-TTE----EEEEE
T ss_pred cCCcceeEEeecccccceecceeeeeecCCCCCeEeE-EECCCCCceEEEcCCCE---EEEE--ECC-CCc----EEEEe
Confidence 3322 23455555443322 2333333345554 49999987776555432 4555 652 221 12232
Q ss_pred CC--CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 236 TN--GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 236 t~--~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.. ......++|||||++|+-...+ ..+.+.++.
T Consensus 308 ~~gH~~~V~~v~fSpdg~~laS~S~D----~tvrvw~ip 342 (365)
T 4h5i_A 308 KQAHSFAITEVTISPDSTYVASVSAA----NTIHIIKLP 342 (365)
T ss_dssp TTSSSSCEEEEEECTTSCEEEEEETT----SEEEEEECC
T ss_pred cCcccCCEEEEEECCCCCEEEEEeCC----CeEEEEEcC
Confidence 22 2347778999999987543222 367777764
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-09 Score=105.73 Aligned_cols=171 Identities=13% Similarity=0.044 Sum_probs=106.2
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCc---EEEEECCCCCCCC----------chhhHH-----------
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI---LVWKLDNRGTARR----------GLKFEA----------- 382 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~---~vv~~d~rG~g~~----------~~~~~~----------- 382 (550)
+.|.||++||.+.+.. .|..+++.|+++|| .|+++|++|+|.+ |..-..
T Consensus 21 ~~ppVVLlHG~g~s~~-------~w~~la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~ 93 (484)
T 2zyr_A 21 DFRPVVFVHGLAGSAG-------QFESQGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPE 93 (484)
T ss_dssp CCCCEEEECCTTCCGG-------GGHHHHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHH
T ss_pred CCCEEEEECCCCCCHH-------HHHHHHHHHHHcCCCcceEEEEECCCCCccccccccccccccccccccccccccccc
Confidence 4477889999766542 34557888999999 6999999998743 000000
Q ss_pred ----HHhh---ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcCCcccc
Q 008873 383 ----SIKH---NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 383 ----~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~~~~~~ 452 (550)
.... .......+++.+.++.+.++. ..+++.|+||||||.+++.++.++| ++++++|+.+|...+.
T Consensus 94 ~l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~~d-- 169 (484)
T 2zyr_A 94 TLDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVD-- 169 (484)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCSEE--
T ss_pred cccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccccc--
Confidence 0000 000112566777777776653 2368999999999999999999887 4789999988765411
Q ss_pred cchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCC---CChHHHHHHHHHHHHcCC-CeEEEEcCCCCCc
Q 008873 453 DTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDEN---VHFRHTARLINALVAARK-PYEILIFPDERHM 528 (550)
Q Consensus 453 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~---v~~~~~~~~~~~l~~~~~-~~~~~~~p~~~H~ 528 (550)
+ ....++|.+.|..|.. ..+.. ++ . ..+.+++++++|.
T Consensus 170 ------------------~----------p~g~~~L~ilG~~d~~p~V~~pss------~L----~~ga~~v~i~~a~H~ 211 (484)
T 2zyr_A 170 ------------------A----------PEGIPTLAVFGNPKALPALGLPEE------KV----VYNATNVYFNNMTHV 211 (484)
T ss_dssp ------------------C----------CTTSCEEEEEECGGGSCCSSCCSS------CC----EETSEEEEETTCCHH
T ss_pred ------------------c----------CcCCHHHHHhCCCCcCCcccChhH------hc----CCCceEEEECCCCcc
Confidence 0 0123556666654431 00110 11 1 3356677999998
Q ss_pred CCCCCcHHHHHHHHHHHHHH
Q 008873 529 PRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 529 ~~~~~~~~~~~~~~~~fl~~ 548 (550)
... . .....+.+++||..
T Consensus 212 ~ll-~-dp~v~~~Vl~fL~~ 229 (484)
T 2zyr_A 212 QLC-T-SPETFAVMFEFING 229 (484)
T ss_dssp HHH-H-CHHHHHHHHHHHHS
T ss_pred ccc-c-CHHHHHHHHHHhcc
Confidence 532 2 23456678888864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.2e-07 Score=90.33 Aligned_cols=188 Identities=7% Similarity=-0.060 Sum_probs=113.1
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|++||+++++.... + .........++|+|||+.++....... .|+++|+.+++....... .....
T Consensus 192 ~v~~~d~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~~~~~~~~--~~~~~- 257 (433)
T 3bws_A 192 AVHVFDLKTLAYKAT-V-------DLTGKWSKILLYDPIRDLVYCSNWISE---DISVIDRKTKLEIRKTDK--IGLPR- 257 (433)
T ss_dssp EEEEEETTTCCEEEE-E-------ECSSSSEEEEEEETTTTEEEEEETTTT---EEEEEETTTTEEEEECCC--CSEEE-
T ss_pred EEEEEECCCceEEEE-E-------cCCCCCeeEEEEcCCCCEEEEEecCCC---cEEEEECCCCcEEEEecC--CCCce-
Confidence 578899998765432 1 112335677899999998766643322 589999998876443321 11110
Q ss_pred cCccccCCCCCccCCCc-EEEEEcc-C-----CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCc
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEK-T-----GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPL 212 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~-~-----g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~ 212 (550)
.. .+++++ .++.... . +...|+++++.+++..........+... .|+|+|+.++++...++
T Consensus 258 --~~-------~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~g~~l~~~~~~~~-- 325 (433)
T 3bws_A 258 --GL-------LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHI-VSGNTENKIYVSDMCCS-- 325 (433)
T ss_dssp --EE-------EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEE-EECSSTTEEEEEETTTT--
T ss_pred --EE-------EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceE-EECCCCCEEEEEecCCC--
Confidence 01 234444 5544432 2 2358999998777654443222223334 48999999998877654
Q ss_pred eeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCC-----------CCEEEEEEcCCCceeEec
Q 008873 213 ESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDS-----------PPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 213 ~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~-----------p~~l~~~~~~~g~~~~~l 280 (550)
.|+..++. .+. ....+........+.++|||+.++........ ...++++++.+++....+
T Consensus 326 --~v~v~d~~-~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 326 --KIEVYDLK-EKK----VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp --EEEEEETT-TTE----EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred --EEEEEECC-CCc----EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 46666762 221 23344444457778999999988766554322 148999998777654433
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-06 Score=83.07 Aligned_cols=195 Identities=10% Similarity=0.004 Sum_probs=108.8
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|||||++|+....+. .|.+||+.+++.... +
T Consensus 35 v~~~~~s~~~~~l~~~~~dg------------------------------------~i~vwd~~~~~~~~~-~------- 70 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDS------------------------------------SASVWYSLNGERLGT-L------- 70 (369)
T ss_dssp EEEEEECTTSCEEEEEESSS------------------------------------CEEEEETTTCCEEEE-E-------
T ss_pred EEEEEEcCCCCEEEEEeCCC------------------------------------EEEEEeCCCchhhhh-h-------
Confidence 36788999999988754331 367889998876532 1
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC----ceeeccCccccCC------------
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD----SWVNLHDCFTPLD------------ 147 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~----~~~~~~~~~~~~~------------ 147 (550)
......+..++|+|||+.++...... .|.+.++.+++.......... .|.+.+..+....
T Consensus 71 ~~h~~~v~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~ 146 (369)
T 3zwl_B 71 DGHTGTIWSIDVDCFTKYCVTGSADY----SIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146 (369)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTT----EEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred hhcCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence 22345678899999999887765432 377778887776544332211 1111110000000
Q ss_pred --------------------------------CCCccCCCc-EEEEEccCCccEEEEEeCCC-ce-eecccccCeEEEEE
Q 008873 148 --------------------------------KGVTKYSGG-FIWASEKTGFRHLYLHDING-TC-LGPITEGDWMVEQI 192 (550)
Q Consensus 148 --------------------------------~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~-~~-~~~lT~~~~~~~~~ 192 (550)
....+++++ +++....+ ..|+++++.+ .+ ...+......+...
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD--GKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT--SEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC--CEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 000122332 33333223 3567777655 32 33444444445555
Q ss_pred EeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecC
Q 008873 193 VGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 193 ~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~ 259 (550)
. |+++++.|+..+.. + .|...++. .+. ....+........+.++|+++.++.....
T Consensus 225 ~-~~~~~~~l~~~~~d-~----~i~v~d~~-~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 225 Q-FSPDLTYFITSSRD-T----NSFLVDVS-TLQ----VLKKYETDCPLNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp E-ECTTSSEEEEEETT-S----EEEEEETT-TCC----EEEEEECSSCEEEEEECSSSSEEEEEECC
T ss_pred E-ECCCCCEEEEecCC-c----eEEEEECC-CCc----eeeeecCCCCceeEEecCCCceEEEeecC
Confidence 4 99999887766543 2 45555762 222 23344444456777899999988776544
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=91.36 Aligned_cols=208 Identities=11% Similarity=-0.004 Sum_probs=118.5
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE-EEEcccCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTD 82 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~ 82 (550)
...+.|||||++|+++...+ ..|+++|+++++.. .+.....
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~-----------------------------------~~v~~~d~~~~~~~~~~~~~~~--- 77 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKS-----------------------------------ESLVKIDLVTGETLGRIDLSTP--- 77 (337)
T ss_dssp CCCEEECTTSSEEEEEETTT-----------------------------------TEEEEEETTTCCEEEEEECCBT---
T ss_pred ccceEEcCCCCEEEEEeCCC-----------------------------------CeEEEEECCCCCeEeeEEcCCc---
Confidence 56788999998876653211 24789999988765 3443210
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEec-----CC---CceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNR-----SQ---TKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r-----~~---~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
.........++|||||+.+++.... .. ....|+++++++++............ .+ .+++
T Consensus 78 -~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-----~~-------~~s~ 144 (337)
T 1pby_B 78 -EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT-----ML-------AWAR 144 (337)
T ss_dssp -TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC-----CE-------EECT
T ss_pred -ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcc-----ee-------EECC
Confidence 0000123457899999987776421 11 12569999999987654433211100 01 2344
Q ss_pred Cc-EEEEEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCc-------------------e
Q 008873 155 GG-FIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPL-------------------E 213 (550)
Q Consensus 155 ~~-~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~-------------------~ 213 (550)
++ .+++++ ..|+++++.+++.. .+..+.+.. ...|+|||+.|++.....+.. .
T Consensus 145 dg~~l~~~~----~~i~~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (337)
T 1pby_B 145 DGSKLYGLG----RDLHVMDPEAGTLVEDKPIQSWEA--ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR 218 (337)
T ss_dssp TSSCEEEES----SSEEEEETTTTEEEEEECSTTTTT--TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred CCCEEEEeC----CeEEEEECCCCcEeeeeeccccCC--CceeCCCccEEeeeccCCCceeeeeeccccccccccccccc
Confidence 44 455552 36999998877643 333232111 225899998887665433210 0
Q ss_pred eEEEEEEeCCCCCCCCCCCeeeCC---CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 214 SHLYCAKLYPDWNHTLEAPVKLTN---GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~lt~---~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
..|+.+++ ... +...+.. ......+.++|||++++.. . ..++++++.+++....+
T Consensus 219 ~~v~~~d~--~~~----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~-----~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 219 TGLLTMDL--ETG----EMAMREVRIMDVFYFSTAVNPAKTRAFGA-Y-----NVLESFDLEKNASIKRV 276 (337)
T ss_dssp EEEEEEET--TTC----CEEEEEEEECSSCEEEEEECTTSSEEEEE-E-----SEEEEEETTTTEEEEEE
T ss_pred cceEEEeC--CCC----CceEeecCCCCCceeeEEECCCCCEEEEe-C-----CeEEEEECCCCcCccee
Confidence 14667776 222 2222211 1234567899999987665 2 58999999887755444
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.5e-06 Score=81.55 Aligned_cols=119 Identities=8% Similarity=0.005 Sum_probs=63.4
Q ss_pred cCCCc-EEEEEccCCccEEEEEeCC-Cceeeccc-----ccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC
Q 008873 152 KYSGG-FIWASEKTGFRHLYLHDIN-GTCLGPIT-----EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD 224 (550)
Q Consensus 152 ~~~~~-~~~~s~~~g~~~l~~~~~~-~~~~~~lT-----~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~ 224 (550)
+++|+ ++++++. |...|++++.+ +++.+.+. .+....... .|+|||+.||+.....+ ...+|.++.. .
T Consensus 152 ~spdG~~l~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~-~~spdg~~l~v~~~~~~--~v~v~~~~~~-~ 226 (365)
T 1jof_A 152 FDPTETYLYSADL-TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV-AMHPTGNYLYALMEAGN--RICEYVIDPA-T 226 (365)
T ss_dssp ECTTSSEEEEEET-TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE-EECTTSSEEEEEETTTT--EEEEEEECTT-T
T ss_pred ECCCCCEEEEEcC-CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe-EECCCCCEEEEEECCCC--eEEEEEEeCC-C
Confidence 45655 6777764 34578888876 55543321 111223334 49999999988765443 3566655531 2
Q ss_pred CCCCC--CCCeeeCCC----C-------ceEEEE-ECCCCCEEEEeecCCC--CCCEEEEEEcC-CCc
Q 008873 225 WNHTL--EAPVKLTNG----K-------GKHVAV-LDHNMRNFVDFHDSLD--SPPRILLCSLQ-DGS 275 (550)
Q Consensus 225 g~~~~--~~~~~lt~~----~-------~~~~~~-~s~dg~~l~~~~s~~~--~p~~l~~~~~~-~g~ 275 (550)
|.... .....+... . ....+. |||||++|+......+ .+..+.++++. +|+
T Consensus 227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 21000 000112111 1 245568 9999998754433221 23477787774 565
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.5e-08 Score=80.23 Aligned_cols=96 Identities=17% Similarity=-0.016 Sum_probs=61.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.+|.++.+.... +.|.||++| +.. ..|.. . |++ +|.|+++|+||+|.+......
T Consensus 9 ~~g~~~~~~~~g---------~~~~vv~~H-~~~-----~~~~~----~---l~~-~~~v~~~d~~G~G~s~~~~~~--- 62 (131)
T 2dst_A 9 LYGLNLVFDRVG---------KGPPVLLVA-EEA-----SRWPE----A---LPE-GYAFYLLDLPGYGRTEGPRMA--- 62 (131)
T ss_dssp ETTEEEEEEEEC---------CSSEEEEES-SSG-----GGCCS----C---CCT-TSEEEEECCTTSTTCCCCCCC---
T ss_pred ECCEEEEEEEcC---------CCCeEEEEc-CCH-----HHHHH----H---HhC-CcEEEEECCCCCCCCCCCCCC---
Confidence 467777655432 126788899 221 12321 1 444 599999999999876532211
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCe
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV 436 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~ 436 (550)
.+++.+.+..+.+.- +.+++.++|||+||.+++.++.++|.+
T Consensus 63 -------~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~l 104 (131)
T 2dst_A 63 -------PEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEALGLRA 104 (131)
T ss_dssp -------HHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHHTTCCE
T ss_pred -------HHHHHHHHHHHHHHc--CCCccEEEEEChHHHHHHHHHhcCCcE
Confidence 344444444433332 346899999999999999999998864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-05 Score=76.91 Aligned_cols=201 Identities=11% Similarity=0.106 Sum_probs=118.4
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++||....+. .|.+|++.+++.... + .
T Consensus 27 ~~~~~s~~~~~l~s~~~dg------------------------------------~i~iw~~~~~~~~~~-~-------~ 62 (312)
T 4ery_A 27 SSVKFSPNGEWLASSSADK------------------------------------LIKIWGAYDGKFEKT-I-------S 62 (312)
T ss_dssp EEEEECTTSSEEEEEETTS------------------------------------CEEEEETTTCCEEEE-E-------C
T ss_pred EEEEECCCCCEEEEeeCCC------------------------------------eEEEEeCCCcccchh-h-------c
Confidence 5788999999887754331 257788888776543 1 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 163 (550)
.....+..++|+|||+.++...... .|.+.++.+++.......... .+.. . .+++++ +++....
T Consensus 63 ~h~~~v~~~~~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~-~v~~---~-------~~~~~~~~l~s~~~ 127 (312)
T 4ery_A 63 GHKLGISDVAWSSDSNLLVSASDDK----TLKIWDVSSGKCLKTLKGHSN-YVFC---C-------NFNPQSNLIVSGSF 127 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTCCEEEEEECCSS-CEEE---E-------EECSSSSEEEEEET
T ss_pred cCCCceEEEEEcCCCCEEEEECCCC----EEEEEECCCCcEEEEEcCCCC-CEEE---E-------EEcCCCCEEEEEeC
Confidence 2344678899999999887765432 477778888876543332111 1100 0 123333 5555444
Q ss_pred CCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC--Cc
Q 008873 164 TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG--KG 240 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~--~~ 240 (550)
+| .|.++|+.+++ ...+......+.... |+++++.|+..+.. + ...+| ++. .+. ....+... ..
T Consensus 128 d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d-~--~i~~w--d~~-~~~----~~~~~~~~~~~~ 194 (312)
T 4ery_A 128 DE--SVRIWDVKTGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYD-G--LCRIW--DTA-SGQ----CLKTLIDDDNPP 194 (312)
T ss_dssp TS--CEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSEEEEEETT-S--CEEEE--ETT-TCC----EEEEECCSSCCC
T ss_pred CC--cEEEEECCCCEEEEEecCCCCcEEEEE-EcCCCCEEEEEeCC-C--cEEEE--ECC-CCc----eeeEEeccCCCc
Confidence 44 46677776544 344544444455544 89999876655443 3 14444 652 221 12233221 23
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
...+.|+|++++++....+ ..+.+.++.+++..+.+.
T Consensus 195 ~~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLD----NTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp EEEEEECTTSSEEEEEETT----TEEEEEETTTTEEEEEEC
T ss_pred eEEEEECCCCCEEEEEcCC----CeEEEEECCCCcEEEEEE
Confidence 5667899999988765433 478999998887655554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=84.54 Aligned_cols=70 Identities=9% Similarity=-0.087 Sum_probs=45.3
Q ss_pred Eee-cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 195 VNE-ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 195 ~s~-dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
++| ||+.+|+. ...|+.+++. .+. ....+........+.++|||++|+.. .. ...+.++++.+
T Consensus 262 ~sp~dg~~l~~~-------~~~v~~~d~~-~~~----~~~~~~~~~~~~~~~~s~dg~~l~~~--~~--~~~v~v~d~~~ 325 (349)
T 1jmx_B 262 RSPKDPNQIYGV-------LNRLAKYDLK-QRK----LIKAANLDHTYYCVAFDKKGDKLYLG--GT--FNDLAVFNPDT 325 (349)
T ss_dssp ECSSCTTEEEEE-------ESEEEEEETT-TTE----EEEEEECSSCCCEEEECSSSSCEEEE--SB--SSEEEEEETTT
T ss_pred ecCCCCCEEEEE-------cCeEEEEECc-cCe----EEEEEcCCCCccceEECCCCCEEEEe--cC--CCeEEEEeccc
Confidence 568 88888776 1367777872 221 22333333345677899999988663 21 26899999988
Q ss_pred CceeEec
Q 008873 274 GSLVLPL 280 (550)
Q Consensus 274 g~~~~~l 280 (550)
++.+..+
T Consensus 326 ~~~~~~~ 332 (349)
T 1jmx_B 326 LEKVKNI 332 (349)
T ss_dssp TEEEEEE
T ss_pred cceeeee
Confidence 8765554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.68 E-value=6.1e-06 Score=79.31 Aligned_cols=189 Identities=12% Similarity=0.076 Sum_probs=107.0
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-ceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~ 138 (550)
.|+++|.++++.+.+... .......+.|+|||++++...........|++++.++++.+.+...... ....
T Consensus 67 ~i~~~d~~~~~~~~~~~~--------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 67 NIFKINPETKEIKRPFVS--------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp EEEEECTTTCCEEEEEEC--------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred EEEEEeCCCCcEEEEeeC--------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 578889988887665321 1235677899999986665433211224699999999987654321111 0100
Q ss_pred ccCccccCCCCCccCCCcEEEEEccC-----CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKT-----GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~-----g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
. + ..++++-+|++... +...||+++.++++.+.++.+......+ .|++||+.||+.....
T Consensus 139 ~---i-------~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~dg~~l~v~~~~~---- 203 (333)
T 2dg1_A 139 D---M-------VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGI-ALSTDEKVLWVTETTA---- 203 (333)
T ss_dssp E---E-------EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEE-EECTTSSEEEEEEGGG----
T ss_pred c---e-------EECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccce-EECCCCCEEEEEeCCC----
Confidence 0 0 23455544444332 2468999998877666665432123334 4899999999886543
Q ss_pred eEEEEEEeCCCCCCCCCCCee--------eCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 214 SHLYCAKLYPDWNHTLEAPVK--------LTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~--------lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
..|+++++..++. .... +........+.++++|+.++....+ ..|++++. +++..+.+
T Consensus 204 ~~i~~~d~~~~g~----~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~----~~v~~~d~-~g~~~~~~ 269 (333)
T 2dg1_A 204 NRLHRIALEDDGV----TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ----GRVLVFNK-RGYPIGQI 269 (333)
T ss_dssp TEEEEEEECTTSS----SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT----TEEEEECT-TSCEEEEE
T ss_pred CeEEEEEecCCCc----CcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC----CEEEEECC-CCCEEEEE
Confidence 3577777732222 1111 1111124456788998754433222 37888887 45544443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.65 E-value=6.4e-06 Score=78.89 Aligned_cols=162 Identities=7% Similarity=-0.041 Sum_probs=96.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+.+++.... + ......+..+.|+|||+.++..... ..|++.++.+++............ .
T Consensus 164 ~v~~~d~~~~~~~~~-~-------~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~v~--~ 229 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQ-F-------QGHTDGASCIDISNDGTKLWTGGLD----NTVRSWDLREGRQLQQHDFTSQIF--S 229 (337)
T ss_dssp CEEEEETTTTEEEEE-E-------CCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTTEEEEEEECSSCEE--E
T ss_pred cEEEEeCCCCceeee-e-------ecccCceEEEEECCCCCEEEEEecC----CcEEEEECCCCceEeeecCCCceE--E
Confidence 368899998865432 1 1224467889999999988776533 248888999887655443322211 0
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
+ .+++++ +++....+| .|++++..+++...+......+.... |+++++.|+..+. ++ .|..
T Consensus 230 ---~-------~~s~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~-dg----~i~~ 291 (337)
T 1gxr_A 230 ---L-------GYCPTGEWLAVGMESS--NVEVLHVNKPDKYQLHLHESCVLSLK-FAYCGKWFVSTGK-DN----LLNA 291 (337)
T ss_dssp ---E-------EECTTSSEEEEEETTS--CEEEEETTSSCEEEECCCSSCEEEEE-ECTTSSEEEEEET-TS----EEEE
T ss_pred ---E-------EECCCCCEEEEEcCCC--cEEEEECCCCCeEEEcCCccceeEEE-ECCCCCEEEEecC-CC----cEEE
Confidence 1 233443 555544444 47778877766666655554555554 9999987765554 32 3444
Q ss_pred EEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeec
Q 008873 219 AKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHD 258 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s 258 (550)
.++. .+. .............+.|+||++.|+....
T Consensus 292 ~~~~-~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 326 (337)
T 1gxr_A 292 WRTP-YGA----SIFQSKESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp EETT-TCC----EEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred EECC-CCe----EEEEecCCCcEEEEEECCCCCEEEEecC
Confidence 4652 222 1223333345677889999988765543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.6e-06 Score=78.33 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=103.1
Q ss_pred EEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.+||+.+++... +.. ....+..++|+|||+.++..... ..|.+.++++++.......... .+.
T Consensus 103 ~i~lWd~~~~~~~~~~~~---------~~~~~~~~~~spdg~~l~~g~~d----g~v~i~~~~~~~~~~~~~~~~~-~v~ 168 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDA---------GPVDAWTLAFSPDSQYLATGTHV----GKVNIFGVESGKKEYSLDTRGK-FIL 168 (321)
T ss_dssp EEEEEETTTTEEEEEEEC---------CTTCCCCEEECTTSSEEEEECTT----SEEEEEETTTCSEEEEEECSSS-CEE
T ss_pred cEEEEECCCCCEEEEEeC---------CCccEEEEEECCCCCEEEEEcCC----CcEEEEEcCCCceeEEecCCCc-eEE
Confidence 57889999886543 321 12334568999999988776433 2477788888876543332111 111
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
. + .+++++ +++....+| .|.++|+.+++. ..+......+... .|+|+++.|+. +..++. ..|
T Consensus 169 ~---~-------~~spdg~~lasg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l-~~spd~~~l~s-~s~dg~--i~i 232 (321)
T 3ow8_A 169 S---I-------AYSPDGKYLASGAIDG--IINIFDIATGKLLHTLEGHAMPIRSL-TFSPDSQLLVT-ASDDGY--IKI 232 (321)
T ss_dssp E---E-------EECTTSSEEEEEETTS--CEEEEETTTTEEEEEECCCSSCCCEE-EECTTSCEEEE-ECTTSC--EEE
T ss_pred E---E-------EECCCCCEEEEEcCCC--eEEEEECCCCcEEEEEcccCCceeEE-EEcCCCCEEEE-EcCCCe--EEE
Confidence 0 1 234444 555444444 467778766553 3444334344444 49999986654 444432 455
Q ss_pred EEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
| ++. .+. ....+... .....+.|+||++.|+....+ ..+.+.++.+++.+..+.
T Consensus 233 w--d~~-~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~ 287 (321)
T 3ow8_A 233 Y--DVQ-HAN----LAGTLSGHASWVLNVAFCPDDTHFVSSSSD----KSVKVWDVGTRTCVHTFF 287 (321)
T ss_dssp E--ETT-TCC----EEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEEC
T ss_pred E--ECC-Ccc----eeEEEcCCCCceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCEEEEEEc
Confidence 5 552 221 22334332 236677999999987644333 368888887777655554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-06 Score=82.07 Aligned_cols=165 Identities=7% Similarity=-0.010 Sum_probs=82.3
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCC-CceEEEE--EeecC-ceeeccCccccCCCCCccCCCc-EEEEEc-c
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT-GQRKVIL--VEELD-SWVNLHDCFTPLDKGVTKYSGG-FIWASE-K 163 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~-g~~~~l~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~s~-~ 163 (550)
...++|+|||+.++...... ..|+++++.+ |+...+. ..... .-. + .. ..+++++ +++++. .
T Consensus 131 ~~~~~~s~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~~~~~~~---~--~~----~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 131 CHSANISPDNRTLWVPALKQ---DRICLFTVSDDGHLVAQDPAEVTTVEGAG---P--RH----MVFHPNEQYAYCVNEL 198 (343)
T ss_dssp BCCCEECTTSSEEEEEEGGG---TEEEEEEECTTSCEEEEEEEEEECSTTCC---E--EE----EEECTTSSEEEEEETT
T ss_pred ceEEEECCCCCEEEEecCCC---CEEEEEEecCCCceeeecccccccCCCCC---c--ce----EEECCCCCEEEEEeCC
Confidence 45678999999776654232 2477777776 7665443 21111 000 0 00 0245554 555544 3
Q ss_pred CCccEEEEEeCC--Cceeecc------ccc---CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCC
Q 008873 164 TGFRHLYLHDIN--GTCLGPI------TEG---DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP 232 (550)
Q Consensus 164 ~g~~~l~~~~~~--~~~~~~l------T~~---~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~ 232 (550)
++ .|.+++.+ +++.+.+ ..+ ......+ .|+|||+.||++...++ .|..+++...+. .....
T Consensus 199 ~~--~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i-~~s~dg~~l~v~~~~~~----~i~v~d~~~~~~-~~~~~ 270 (343)
T 1ri6_A 199 NS--SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI-HITPDGRHLYACDRTAS----LITVFSVSEDGS-VLSKE 270 (343)
T ss_dssp TT--EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE-EECTTSSEEEEEETTTT----EEEEEEECTTSC-CEEEE
T ss_pred CC--EEEEEEecCCCCcEEEEeeccccCccccccCCccce-EECCCCCEEEEEecCCC----EEEEEEEcCCCC-ceEEe
Confidence 33 56666653 3332211 111 1122233 49999999987765443 344445521121 00012
Q ss_pred eeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 233 VKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 233 ~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
..+........+.|+|||+++++.... ...-.+|.++..+|+
T Consensus 271 ~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 271 GFQPTETQPRGFNVDHSGKYLIAAGQK-SHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEECSSSCCCEEECTTSSEEEEECTT-TCEEEEEEEETTTTE
T ss_pred eeecCCCccceEEECCCCCEEEEecCC-CCeEEEEEEcCCCce
Confidence 223222234567899999987665433 222345555765664
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=7.5e-06 Score=78.56 Aligned_cols=198 Identities=15% Similarity=0.039 Sum_probs=114.6
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.+..|+||++.|.|+-... ..|+++|.++++.+.+..
T Consensus 52 egp~~~~~~~~l~~~d~~~-----------------------------------~~i~~~d~~~~~~~~~~~-------- 88 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILE-----------------------------------RELHELHLASGRKTVHAL-------- 88 (326)
T ss_dssp EEEEEETTTTEEEEEEGGG-----------------------------------TEEEEEETTTTEEEEEEC--------
T ss_pred cCCeEeCCCCEEEEEECCC-----------------------------------CEEEEEECCCCcEEEEEC--------
Confidence 4678999988887763321 247899999987766543
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC---ceeeccCccccCCCCCccCCCcEEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD---SWVNLHDCFTPLDKGVTKYSGGFIWAS 161 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s 161 (550)
...+..+.|+|||++++.. . ..|++++.++|+.+.+...... ..... + .+++++-+|++
T Consensus 89 --~~~v~~i~~~~dg~l~v~~-~-----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~---i-------~~d~~G~l~v~ 150 (326)
T 2ghs_A 89 --PFMGSALAKISDSKQLIAS-D-----DGLFLRDTATGVLTLHAELESDLPGNRSND---G-------RMHPSGALWIG 150 (326)
T ss_dssp --SSCEEEEEEEETTEEEEEE-T-----TEEEEEETTTCCEEEEECSSTTCTTEEEEE---E-------EECTTSCEEEE
T ss_pred --CCcceEEEEeCCCeEEEEE-C-----CCEEEEECCCCcEEEEeeCCCCCCCCCCCC---E-------EECCCCCEEEE
Confidence 2346778899999976654 1 1399999999998776542111 01100 0 23455533333
Q ss_pred ccC-----CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeC-CCC-CCCCCCCee
Q 008873 162 EKT-----GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY-PDW-NHTLEAPVK 234 (550)
Q Consensus 162 ~~~-----g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~-~~g-~~~~~~~~~ 234 (550)
... +...||+++ + ++.+.+..+......+ .|++||+.||+..... ..|+++++. .+| .. ...+.
T Consensus 151 ~~~~~~~~~~~~l~~~~-~-g~~~~~~~~~~~~~~i-~~s~dg~~lyv~~~~~----~~I~~~d~~~~~Gl~~--~~~~~ 221 (326)
T 2ghs_A 151 TMGRKAETGAGSIYHVA-K-GKVTKLFADISIPNSI-CFSPDGTTGYFVDTKV----NRLMRVPLDARTGLPT--GKAEV 221 (326)
T ss_dssp EEETTCCTTCEEEEEEE-T-TEEEEEEEEESSEEEE-EECTTSCEEEEEETTT----CEEEEEEBCTTTCCBS--SCCEE
T ss_pred eCCCcCCCCceEEEEEe-C-CcEEEeeCCCcccCCe-EEcCCCCEEEEEECCC----CEEEEEEcccccCCcc--cCceE
Confidence 321 346899999 4 5555554321112334 4999999999986543 468888872 123 11 11122
Q ss_pred e---CCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 235 L---TNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 235 l---t~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
+ ....+ ...+.++++|..++..... ..|++++. +++..
T Consensus 222 ~~~~~~~~~~p~gi~~d~~G~lwva~~~~----~~v~~~d~-~g~~~ 263 (326)
T 2ghs_A 222 FIDSTGIKGGMDGSVCDAEGHIWNARWGE----GAVDRYDT-DGNHI 263 (326)
T ss_dssp EEECTTSSSEEEEEEECTTSCEEEEEETT----TEEEEECT-TCCEE
T ss_pred EEECCCCCCCCCeeEECCCCCEEEEEeCC----CEEEEECC-CCCEE
Confidence 2 11112 3445778888654433221 36777776 45543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-05 Score=75.16 Aligned_cols=206 Identities=10% Similarity=0.044 Sum_probs=117.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.+..|+|+++.|.|+-... ..|+++|.++++...+..
T Consensus 16 Egp~w~~~~~~l~~~d~~~-----------------------------------~~i~~~d~~~~~~~~~~~-------- 52 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPA-----------------------------------KKVCRWDSFTKQVQRVTM-------- 52 (297)
T ss_dssp EEEEEETTTTEEEEEETTT-----------------------------------TEEEEEETTTCCEEEEEC--------
T ss_pred cCCeEECCCCEEEEEECCC-----------------------------------CEEEEEECCCCcEEEEeC--------
Confidence 5788999998888853221 257889999988765543
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 163 (550)
......+.++|||++++.. . ..|++++.++|+.+.+....... +...+.. ...++++ +++.+..
T Consensus 53 --~~~~~~i~~~~dG~l~v~~--~----~~l~~~d~~~g~~~~~~~~~~~~-----~~~~~~d--i~~d~dG~l~~~~~~ 117 (297)
T 3g4e_A 53 --DAPVSSVALRQSGGYVATI--G----TKFCALNWKEQSAVVLATVDNDK-----KNNRFND--GKVDPAGRYFAGTMA 117 (297)
T ss_dssp --SSCEEEEEEBTTSSEEEEE--T----TEEEEEETTTTEEEEEEECCTTC-----SSEEEEE--EEECTTSCEEEEEEE
T ss_pred --CCceEEEEECCCCCEEEEE--C----CeEEEEECCCCcEEEEEecCCCC-----CCCCCCC--EEECCCCCEEEecCC
Confidence 2346678999999954432 1 25999999999887776532110 0000000 0124555 4443322
Q ss_pred ---------CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeC-CCCCCCCCCCe
Q 008873 164 ---------TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLY-PDWNHTLEAPV 233 (550)
Q Consensus 164 ---------~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~-~~g~~~~~~~~ 233 (550)
.....||+++.++. .+.+..+......+ .|++||+.||++.... ..|+++++. .+|... ..+
T Consensus 118 ~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi-~~spdg~~lyv~~~~~----~~i~~~~~d~~~G~~~--~~~ 189 (297)
T 3g4e_A 118 EETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGL-DWSLDHKIFYYIDSLS----YSVDAFDYDLQTGQIS--NRR 189 (297)
T ss_dssp CCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEE-EECTTSCEEEEEEGGG----TEEEEEEECTTTCCEE--EEE
T ss_pred cccccccccCCCcEEEEEECCCC-EEEEeeccccccce-EEcCCCCEEEEecCCC----CcEEEEeccCCCCccc--CcE
Confidence 12357999998653 33333221112344 4999999999887654 356676762 133210 111
Q ss_pred ee---CCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 234 KL---TNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 234 ~l---t~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.+ ... ..-..+.++++|...+....+ ..|++++..+|+.+..+
T Consensus 190 ~~~~~~~~~~~p~g~~~d~~G~lwva~~~~----~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 190 SVYKLEKEEQIPDGMCIDAEGKLWVACYNG----GRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp EEEECCGGGCEEEEEEEBTTSCEEEEEETT----TEEEEECTTTCCEEEEE
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEcCC----CEEEEEcCCCceEEEEE
Confidence 12 111 123455788898644333222 36888888667754443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.8e-06 Score=79.53 Aligned_cols=188 Identities=12% Similarity=0.042 Sum_probs=106.9
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECC-CCeEEEEEEecCCCceEEEEEECCCCceEEEEEeec-Cceee
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWVN 138 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wsp-Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~ 138 (550)
|.+||+.+++....... ......+..++|+| |++.++...... .|.+.++.+...+.+..... ..++.
T Consensus 98 i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~v~ 167 (383)
T 3ei3_B 98 IILWDYDVQNKTSFIQG------MGPGDAITGMKFNQFNTNQLFVSSIRG----ATTLRDFSGSVIQVFAKTDSWDYWYC 167 (383)
T ss_dssp EEEEETTSTTCEEEECC------CSTTCBEEEEEEETTEEEEEEEEETTT----EEEEEETTSCEEEEEECCCCSSCCEE
T ss_pred EEEEeCCCcccceeeec------CCcCCceeEEEeCCCCCCEEEEEeCCC----EEEEEECCCCceEEEeccCCCCCCeE
Confidence 67889998776543211 12345788899999 556666654322 37777888755554443221 01111
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
. + .+++++ +++....+| .|+++++++.....+......+.... |+|+++.+++++..++ ...+|
T Consensus 168 ~---~-------~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~h~~~v~~~~-~~~~~~~~l~s~~~d~--~i~iw 232 (383)
T 3ei3_B 168 C---V-------DVSVSRQMLATGDSTG--RLLLLGLDGHEIFKEKLHKAKVTHAE-FNPRCDWLMATSSVDA--TVKLW 232 (383)
T ss_dssp E---E-------EEETTTTEEEEEETTS--EEEEEETTSCEEEEEECSSSCEEEEE-ECSSCTTEEEEEETTS--EEEEE
T ss_pred E---E-------EECCCCCEEEEECCCC--CEEEEECCCCEEEEeccCCCcEEEEE-ECCCCCCEEEEEeCCC--EEEEE
Confidence 0 1 233433 555544444 67778877666666665554556554 9999985556665554 24444
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECC-CCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDH-NMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~-dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
++. .+.........+........+.|+| +++.|+....+ ..+.++++.+++....+
T Consensus 233 --d~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 233 --DLR-NIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR----NEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp --EGG-GCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS----SEEEEEETTBTTSCSEE
T ss_pred --eCC-CCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC----CcEEEEECCCCcccccc
Confidence 652 1110000122232334477789999 99887655433 48899998877654443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-05 Score=76.82 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=69.9
Q ss_pred CcEEEEEccCCccEEEEEeCCCceeecccc----------cCeEE--EEEEeEeecCCEEEEEEcCCCC-----ceeEEE
Q 008873 155 GGFIWASEKTGFRHLYLHDINGTCLGPITE----------GDWMV--EQIVGVNEASGQVYFTGTLDGP-----LESHLY 217 (550)
Q Consensus 155 ~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~----------~~~~~--~~~~~~s~dg~~l~f~~~~~~~-----~~~~l~ 217 (550)
++++|.+. . .+++++|..++..+.++. ..|.. .....+++|++++|+....... ....|+
T Consensus 225 ~~~~~~~~-~--~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 225 GRIVWPVY-S--GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred CEEEEEcC-C--ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 34666653 2 378999986654332221 01111 1123578999999987653210 124799
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEe
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 279 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~ 279 (550)
.+|+. .+. ....+..+.....+.+||||++++++..... ..+.++|+++++.++.
T Consensus 302 VID~~-t~~----vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~--~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 302 SVTGL-VGQ----TSSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECC-CCE----EEEEEECCCCcCeEEECCCCCeEEEEEcCCC--CeEEEEECCCCCEEee
Confidence 99982 221 3455655445677799999996667654322 4899999998886655
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.8e-08 Score=93.53 Aligned_cols=94 Identities=15% Similarity=-0.004 Sum_probs=59.1
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.||++||.+++.. .|..+...|. +.|+++|.++... ...++++.+.+..+...-
T Consensus 24 ~~~l~~~hg~~~~~~-------~~~~~~~~L~---~~v~~~d~~~~~~--------------~~~~~~~a~~~~~~i~~~ 79 (283)
T 3tjm_A 24 ERPLFLVHPIEGSTT-------VFHSLASRLS---IPTYGLQCTRAAP--------------LDSIHSLAAYYIDCIRQV 79 (283)
T ss_dssp SCCEEEECCTTCCSG-------GGHHHHHHCS---SCEEEECCCTTSC--------------CSCHHHHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHH-------HHHHHHHhcC---ceEEEEecCCCCC--------------CCCHHHHHHHHHHHHHHh
Confidence 466788999766543 2333455554 9999999964321 112344443333232221
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhC---CCeeE---EEEEcCCc
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARF---PDVFQ---CAVSGAPV 446 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~~~---~~v~~~~~ 446 (550)
. ...++.++||||||.++..++.+. ++.+. .+++.++.
T Consensus 80 ~-~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~ 123 (283)
T 3tjm_A 80 Q-PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 123 (283)
T ss_dssp C-CSSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCC
T ss_pred C-CCCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCC
Confidence 1 236899999999999999988754 67777 77776654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=7.2e-05 Score=71.69 Aligned_cols=181 Identities=10% Similarity=0.069 Sum_probs=89.5
Q ss_pred EEEEECC--CCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCcee
Q 008873 61 LGVVSAA--GGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWV 137 (550)
Q Consensus 61 l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~ 137 (550)
|.+|+++ +++.+.+... .. ......++|+|||+.++...... . .|+++++..|+...+.. .....
T Consensus 62 v~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~s~dg~~l~~~~~~~-~--~i~~~d~~~~~~~~~~~~~~~~~-- 129 (343)
T 1ri6_A 62 VLAYRIAPDDGALTFAAES------AL-PGSLTHISTDHQGQFVFVGSYNA-G--NVSVTRLEDGLPVGVVDVVEGLD-- 129 (343)
T ss_dssp EEEEEECTTTCCEEEEEEE------EC-SSCCSEEEECTTSSEEEEEETTT-T--EEEEEEEETTEEEEEEEEECCCT--
T ss_pred EEEEEecCCCCceeecccc------cc-CCCCcEEEEcCCCCEEEEEecCC-C--eEEEEECCCCccccccccccCCC--
Confidence 4555555 7766544221 01 12445689999999877664332 2 25555553443322222 11110
Q ss_pred eccCccccCCCCCccCCCc-EEEEEc-cCCccEEEEEeCCC-ceeeccc-----c-cCeEEEEEEeEeecCCEEEEEEcC
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASE-KTGFRHLYLHDING-TCLGPIT-----E-GDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~-~~g~~~l~~~~~~~-~~~~~lT-----~-~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
.. ....+++++ .++++. .++ .|+++++++ ++.+.+. . ........ .|+|+|+.||+....
T Consensus 130 ----~~----~~~~~s~dg~~l~~~~~~~~--~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 130 ----GC----HSANISPDNRTLWVPALKQD--RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM-VFHPNEQYAYCVNEL 198 (343)
T ss_dssp ----TB----CCCEECTTSSEEEEEEGGGT--EEEEEEECTTSCEEEEEEEEEECSTTCCEEEE-EECTTSSEEEEEETT
T ss_pred ----Cc----eEEEECCCCCEEEEecCCCC--EEEEEEecCCCceeeecccccccCCCCCcceE-EECCCCCEEEEEeCC
Confidence 00 011345555 666655 333 577777655 4443221 1 11122333 499999999888754
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeee---CCC----CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKL---TNG----KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~l---t~~----~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
++ .+..+++..... .......+ ... .....+.|+|||+++++.... ...+.++++.
T Consensus 199 ~~----~i~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~---~~~i~v~d~~ 261 (343)
T 1ri6_A 199 NS----SVDVWELKDPHG-NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT---ASLITVFSVS 261 (343)
T ss_dssp TT----EEEEEESSCTTS-CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT---TTEEEEEEEC
T ss_pred CC----EEEEEEecCCCC-cEEEEeeccccCccccccCCccceEECCCCCEEEEEecC---CCEEEEEEEc
Confidence 43 344445521111 00001111 111 123457899999988665432 2478888876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.57 E-value=6.7e-06 Score=89.47 Aligned_cols=202 Identities=13% Similarity=0.081 Sum_probs=118.2
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD 82 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 82 (550)
+-.++.|||||++||....+ ..|.+||+.+++.... +
T Consensus 15 ~v~~i~~sp~~~~la~~~~~------------------------------------g~v~iwd~~~~~~~~~-~------ 51 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYS------------------------------------GRVEIWNYETQVEVRS-I------ 51 (814)
T ss_dssp CEEEEEECSSSSEEEEEETT------------------------------------SEEEEEETTTTEEEEE-E------
T ss_pred ceEEEEECCCCCEEEEEeCC------------------------------------CEEEEEECCCCceEEE-E------
Confidence 45788999999999986432 1468899988765432 1
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceeeccCccccCCCCCccCCCc-EEEE
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCFTPLDKGVTKYSGG-FIWA 160 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (550)
......+..++|||||+.|+..... ..|.+.+..+|+...... .....+. . .|++++ +++.
T Consensus 52 -~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~v~~-----~-------~~s~~~~~l~~ 114 (814)
T 3mkq_A 52 -QVTETPVRAGKFIARKNWIIVGSDD----FRIRVFNYNTGEKVVDFEAHPDYIRS-----I-------AVHPTKPYVLS 114 (814)
T ss_dssp -ECCSSCEEEEEEEGGGTEEEEEETT----SEEEEEETTTCCEEEEEECCSSCEEE-----E-------EECSSSSEEEE
T ss_pred -ecCCCcEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCcEEEEEecCCCCEEE-----E-------EEeCCCCEEEE
Confidence 1224568889999999988877543 248888888887644333 2211110 1 234444 5555
Q ss_pred EccCCccEEEEEeCCCc--eeecccccCeEEEEEEeEee-cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 161 SEKTGFRHLYLHDINGT--CLGPITEGDWMVEQIVGVNE-ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~--~~~~lT~~~~~~~~~~~~s~-dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
...+|. |.+++.+++ ....++.....+... .|+| +++.|+. +..++ .|...++. .+. ....+..
T Consensus 115 ~~~dg~--i~vw~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~-~~~dg----~v~vwd~~-~~~----~~~~~~~ 181 (814)
T 3mkq_A 115 GSDDLT--VKLWNWENNWALEQTFEGHEHFVMCV-AFNPKDPSTFAS-GCLDR----TVKVWSLG-QST----PNFTLTT 181 (814)
T ss_dssp EETTSE--EEEEEGGGTSEEEEEEECCSSCEEEE-EEETTEEEEEEE-EETTS----EEEEEETT-CSS----CSEEEEC
T ss_pred EcCCCE--EEEEECCCCceEEEEEcCCCCcEEEE-EEEcCCCCEEEE-EeCCC----eEEEEECC-CCc----ceeEEec
Confidence 555554 555555443 234444444445554 4999 6655554 44433 34444652 221 2233332
Q ss_pred C--CceEEEEECC--CCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 238 G--KGKHVAVLDH--NMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 238 ~--~~~~~~~~s~--dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
. .....+.|+| ++..++....+ ..+.+.++.+++....+.
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~ 225 (814)
T 3mkq_A 182 GQERGVNYVDYYPLPDKPYMITASDD----LTIKIWDYQTKSCVATLE 225 (814)
T ss_dssp CCTTCCCEEEECCSTTCCEEEEECTT----SEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCEEEEEeCC----CEEEEEECCCCcEEEEEc
Confidence 2 3456678888 88877655433 478888887777555554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-06 Score=87.31 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=109.4
Q ss_pred EEEEEECCCCceEEE-EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|+++|+.+++...+ ++. .......+.|+|||++++...+... .|.++|+++|+......... .+
T Consensus 303 ~i~vvd~~~~~~l~~~~i~--------~~~~~~~~~~spdg~~l~va~~~~~---~v~v~D~~tg~l~~~i~~g~---~p 368 (543)
T 1nir_A 303 KVLLVNYKDIDNLTVTSIG--------AAPFLHDGGWDSSHRYFMTAANNSN---KVAVIDSKDRRLSALVDVGK---TP 368 (543)
T ss_dssp EEEEEECTTSSSCEEEEEE--------CCSSCCCEEECTTSCEEEEEEGGGT---EEEEEETTTTEEEEEEECSS---SB
T ss_pred eEEEEEecCCCcceeEEec--------cCcCccCceECCCCCEEEEEecCCC---eEEEEECCCCeEEEeeccCC---CC
Confidence 578888887543221 111 0122345789999997765543332 48889999998655443110 00
Q ss_pred c-cCccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCC-------ce-eecccc-cCeEEEEEEeEeecCCEEEEEEc
Q 008873 139 L-HDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDING-------TC-LGPITE-GDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~-------~~-~~~lT~-~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
. .....+ .+++ +.+|++...+-..|-+++.++ .+ .+.|.. +... ....++|||+.||....
T Consensus 369 h~g~g~~~------~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~--~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 369 HPGRGANF------VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS--LFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp CCTTCEEE------EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC--CCEECCTTCCEEEECCT
T ss_pred CCCCCccc------CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc--eEEEcCCCCCcEEEecC
Confidence 0 000000 1233 566666654555677777655 22 233332 2221 12348999999987653
Q ss_pred CCCC--ceeEEEEEEeCCCCCCCCCCC-eee--------CC-CCceEEEEECCCCCEEEEeecCC-CCCCEEEEEEcCCC
Q 008873 208 LDGP--LESHLYCAKLYPDWNHTLEAP-VKL--------TN-GKGKHVAVLDHNMRNFVDFHDSL-DSPPRILLCSLQDG 274 (550)
Q Consensus 208 ~~~~--~~~~l~~v~~~~~g~~~~~~~-~~l--------t~-~~~~~~~~~s~dg~~l~~~~s~~-~~p~~l~~~~~~~g 274 (550)
.... ....|..+++. ++. .. +.| +. ......+.|+|||+.++++.-+. .....|.++|.+++
T Consensus 441 ~~~~~~~~~~v~v~d~~-~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 441 FNPDARISQSVAVFDLK-NLD----AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp TCSSHHHHTCEEEEETT-CTT----SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECC-CCC----CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 1110 12456667773 232 22 343 22 22356678999999988765332 34578999999999
Q ss_pred ceeEeccC
Q 008873 275 SLVLPLYE 282 (550)
Q Consensus 275 ~~~~~l~~ 282 (550)
+..+.+..
T Consensus 516 ~~~~~i~~ 523 (543)
T 1nir_A 516 KLKAVVKD 523 (543)
T ss_dssp EEEEEECC
T ss_pred eEEEeecC
Confidence 87666653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-05 Score=75.93 Aligned_cols=161 Identities=10% Similarity=0.113 Sum_probs=91.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~ 138 (550)
.+.++|+++++.... + ......+..++|+|||+.|+...... .|.+.|+.+++....... .....
T Consensus 145 ~v~i~~~~~~~~~~~-~-------~~~~~~v~~~~~spdg~~lasg~~dg----~i~iwd~~~~~~~~~~~~h~~~v~-- 210 (321)
T 3ow8_A 145 KVNIFGVESGKKEYS-L-------DTRGKFILSIAYSPDGKYLASGAIDG----IINIFDIATGKLLHTLEGHAMPIR-- 210 (321)
T ss_dssp EEEEEETTTCSEEEE-E-------ECSSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTTEEEEEECCCSSCCC--
T ss_pred cEEEEEcCCCceeEE-e-------cCCCceEEEEEECCCCCEEEEEcCCC----eEEEEECCCCcEEEEEcccCCcee--
Confidence 467889998765432 2 12244678899999999888765443 377888988875433221 11100
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.+ .+++++ +++....+| .|.+++..+++ ...+....-.+.... |+|+|+.|+..+.+ + ...|
T Consensus 211 ---~l-------~~spd~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~-~sp~~~~l~s~s~D-~--~v~i 274 (321)
T 3ow8_A 211 ---SL-------TFSPDSQLLVTASDDG--YIKIYDVQHANLAGTLSGHASWVLNVA-FCPDDTHFVSSSSD-K--SVKV 274 (321)
T ss_dssp ---EE-------EECTTSCEEEEECTTS--CEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSEEEEEETT-S--CEEE
T ss_pred ---EE-------EEcCCCCEEEEEcCCC--eEEEEECCCcceeEEEcCCCCceEEEE-ECCCCCEEEEEeCC-C--cEEE
Confidence 01 244554 555554445 36666765543 334444443455554 99999877655443 3 2555
Q ss_pred EEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEee
Q 008873 217 YCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFH 257 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~ 257 (550)
| ++. .+. ....+.. ......+.|+|+++.|+-..
T Consensus 275 w--d~~-~~~----~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 275 W--DVG-TRT----CVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp E--ETT-TTE----EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred E--eCC-CCE----EEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 5 551 221 2233332 23467779999999876443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.7e-06 Score=76.81 Aligned_cols=206 Identities=13% Similarity=-0.001 Sum_probs=117.0
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++.|+|||+.|.++-... ..|+++|.+++ .+.+...
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~-----------------------------------~~i~~~~~~~~-~~~~~~~------ 67 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQ-----------------------------------NRTWAWSDDGQ-LSPEMHP------ 67 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGG-----------------------------------TEEEEEETTSC-EEEEESS------
T ss_pred ccCCeEeCCCCEEEEEeCCC-----------------------------------CEEEEEECCCC-eEEEECC------
Confidence 36788999999888864432 14788999988 6555331
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 163 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 163 (550)
......+.++|||++++... . ...|++++.++|+.+.+....... .. -.+. ....++++-+|+++.
T Consensus 68 ---~~~~~~l~~~~dg~l~v~~~-~---~~~i~~~d~~~g~~~~~~~~~~~~--~~---~~~~--~i~~d~~G~l~vtd~ 133 (296)
T 3e5z_A 68 ---SHHQNGHCLNKQGHLIACSH-G---LRRLERQREPGGEWESIADSFEGK--KL---NSPN--DVCLAPDGSLWFSDP 133 (296)
T ss_dssp ---CSSEEEEEECTTCCEEEEET-T---TTEEEEECSTTCCEEEEECEETTE--EC---CCCC--CEEECTTSCEEEEEC
T ss_pred ---CCCcceeeECCCCcEEEEec-C---CCeEEEEcCCCCcEEEEeeccCCC--CC---CCCC--CEEECCCCCEEEECC
Confidence 23456789999999654432 1 125999999899887765432110 00 0000 012355664555432
Q ss_pred ----------------CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCC
Q 008873 164 ----------------TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNH 227 (550)
Q Consensus 164 ----------------~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~ 227 (550)
.+...||.++.+ ++.+.+..+......+ .|++||+.+ ++.... ..|+++++..+|..
T Consensus 134 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi-~~s~dg~~l-v~~~~~----~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 134 TYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGL-AFLPSGNLL-VSDTGD----NATHRYCLNARGET 206 (296)
T ss_dssp SHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEE-EECTTSCEE-EEETTT----TEEEEEEECSSSCE
T ss_pred ccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccE-EECCCCCEE-EEeCCC----CeEEEEEECCCCcC
Confidence 123489999987 4555554433223444 499999988 665543 36777777322320
Q ss_pred CCCCCeeeCCCC-ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 228 TLEAPVKLTNGK-GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 228 ~~~~~~~lt~~~-~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
. ...+.+.... ....+.++++|+.++.. ...|++++.. |+....+
T Consensus 207 ~-~~~~~~~~~~~~p~~i~~d~~G~l~v~~------~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 207 E-YQGVHFTVEPGKTDGLRVDAGGLIWASA------GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp E-EEEEEECCSSSCCCSEEEBTTSCEEEEE------TTEEEEECTT-SCEEEEE
T ss_pred c-CCCeEeeCCCCCCCeEEECCCCCEEEEc------CCeEEEECCC-CCEEEEE
Confidence 0 0112221111 12346788999744333 2478888874 6654444
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-07 Score=89.79 Aligned_cols=115 Identities=12% Similarity=-0.054 Sum_probs=68.2
Q ss_pred CceEEEEEcCCCCcee-----ecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh---hccCC--------
Q 008873 327 PYKTLISVYGGPCVQL-----VCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK---HNCGR-------- 390 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~-----~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~---~~~~~-------- 390 (550)
..|.||++||..+... ....|...+..+.+.|+++||.|+++|++|+|.+......... .-.+.
T Consensus 51 ~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~~ 130 (431)
T 2hih_A 51 NKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSEK 130 (431)
T ss_dssp CSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHHH
T ss_pred CCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhcccccccccccc
Confidence 3456788999755311 0122321112367888999999999999999865422111000 00000
Q ss_pred ----CchHHHHHHHHHHHHcCCCC-CCceEEEEechhHHHHHHHHhh--------------------------CCCeeEE
Q 008873 391 ----IDAEDQLTGAEWLIKQGLAK-VGHIGLYGWSYGGYLSAITLAR--------------------------FPDVFQC 439 (550)
Q Consensus 391 ----~~~~D~~~~~~~l~~~~~~d-~~~i~i~G~S~GG~~a~~~~~~--------------------------~~~~~~~ 439 (550)
...+|+.+.++ .+. ..++.|+||||||.++..++.. +|++++.
T Consensus 131 ~~~~~~a~dl~~ll~------~l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~s 204 (431)
T 2hih_A 131 YGHERYGKTYEGVLK------DWKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTS 204 (431)
T ss_dssp HTCCSEEEEECCSCT------TCBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEE
T ss_pred CCHHHHHHHHHHHHH------HhCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeE
Confidence 00111111111 112 3689999999999999998765 6889999
Q ss_pred EEEcCCcC
Q 008873 440 AVSGAPVT 447 (550)
Q Consensus 440 ~v~~~~~~ 447 (550)
++++++..
T Consensus 205 lv~i~tP~ 212 (431)
T 2hih_A 205 ITTIATPH 212 (431)
T ss_dssp EEEESCCT
T ss_pred EEEECCCC
Confidence 99887653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-06 Score=80.56 Aligned_cols=174 Identities=9% Similarity=-0.039 Sum_probs=95.5
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceee
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVN 138 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~ 138 (550)
|.+||+.+++.... + ..-...+..+.|+||++ +++...... .|.+.|+.+++...... ........
T Consensus 151 i~iwd~~~~~~~~~-~-------~~h~~~V~~~~~~~~~~~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~ 218 (344)
T 4gqb_B 151 IKVWDLAQQVVLSS-Y-------RAHAAQVTCVAASPHKDSVFLSCSEDN----RILLWDTRCPKPASQIGCSAPGYLPT 218 (344)
T ss_dssp EEEEETTTTEEEEE-E-------CCCSSCEEEEEECSSCTTEEEEEETTS----CEEEEETTSSSCEEECC----CCCEE
T ss_pred EEEEECCCCcEEEE-E-------cCcCCceEEEEecCCCCCceeeecccc----ccccccccccceeeeeecceeeccce
Confidence 67889999876432 2 22245678899999997 454443322 26677888887543221 11111110
Q ss_pred ccCccccCCCCCccCC--CcEEEEEccCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 139 LHDCFTPLDKGVTKYS--GGFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~--~~~~~~s~~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.. .+++ ..++.....+| .|.++|..+++ ...+......+.... |+|+|..+++++..++. ..
T Consensus 219 ---~~-------~~~p~~~~~l~sg~~dg--~v~~wd~~~~~~~~~~~~h~~~v~~v~-fsp~g~~~lasgs~D~~--i~ 283 (344)
T 4gqb_B 219 ---SL-------AWHPQQSEVFVFGDENG--TVSLVDTKSTSCVLSSAVHSQCVTGLV-FSPHSVPFLASLSEDCS--LA 283 (344)
T ss_dssp ---EE-------EECSSCTTEEEEEETTS--EEEEEESCC--CCEEEECCSSCEEEEE-ECSSSSCCEEEEETTSC--EE
T ss_pred ---ee-------eecCCCCcceEEeccCC--cEEEEECCCCcEEEEEcCCCCCEEEEE-EccCCCeEEEEEeCCCe--EE
Confidence 01 1222 22554444444 56777876654 334444444455554 99999777777666543 45
Q ss_pred EEEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
|| ++ ... +..++.. ......+.|||+++.++.+.+.- ..+.+.++.
T Consensus 284 vw--d~--~~~----~~~~~~~H~~~V~~v~~sp~~~~llas~s~D---~~v~~w~v~ 330 (344)
T 4gqb_B 284 VL--DS--SLS----ELFRSQAHRDFVRDATWSPLNHSLLTTVGWD---HQVVHHVVP 330 (344)
T ss_dssp EE--CT--TCC----EEEEECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEECC
T ss_pred EE--EC--CCC----cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC---CeEEEEECC
Confidence 55 55 222 2333332 23467789999998877665532 245555553
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-05 Score=82.79 Aligned_cols=176 Identities=11% Similarity=0.089 Sum_probs=99.0
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
+.++|..+.....+. .....+..++|||||+.++...... .|.+.+..+...+.+.......+.
T Consensus 368 v~~~~~~~~~~~~~~---------~~~~~v~~~~~s~dg~~l~~~~~d~----~v~~~~~~~~~~~~~~~~~~~v~~--- 431 (577)
T 2ymu_A 368 VKLWNRNGQLLQTLT---------GHSSSVRGVAFSPDGQTIASASDDK----TVKLWNRNGQLLQTLTGHSSSVWG--- 431 (577)
T ss_dssp EEEEETTCCEEEEEE---------CCSSCEEEEEECTTSSCEEEEETTS----EEEEECTTCCEEEEEECCSSCEEE---
T ss_pred EEEEcCCCCEEEEec---------CCCCCeEEEEECCCCCEEEEEeCCC----EEEEEeCCCCEEEEecCCCCCeEE---
Confidence 567787655444442 2234577899999999887664322 355666544333333322222110
Q ss_pred CccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEE
Q 008873 141 DCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 219 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v 219 (550)
+ .+++++ ++.....++ .|.+++.++...+.+......+.... |+|||+.|+..+.. + ...||
T Consensus 432 --~-------~~s~d~~~l~~~~~d~--~v~~w~~~~~~~~~~~~~~~~v~~~~-~spd~~~las~~~d-~--~i~iw-- 494 (577)
T 2ymu_A 432 --V-------AFSPDDQTIASASDDK--TVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDGQTIASASDD-K--TVKLW-- 494 (577)
T ss_dssp --E-------EECTTSSEEEEEETTS--EEEEEETTSCEEEEEECCSSCEEEEE-ECTTSCEEEEEETT-S--EEEEE--
T ss_pred --E-------EECCCCCEEEEEcCCC--EEEEEECCCCEEEEEcCCCCCEEEEE-EcCCCCEEEEEeCC-C--EEEEE--
Confidence 1 123443 444443344 56667777766667766555566554 99999877655443 2 24444
Q ss_pred EeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 220 KLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 220 ~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
+. ++. ..+.+... .....+.|||||++|+....+ ..+.+.+. +++.+..+
T Consensus 495 ~~--~~~----~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d----g~v~lwd~-~~~~~~~~ 545 (577)
T 2ymu_A 495 NR--NGQ----LLQTLTGHSSSVRGVAFSPDGQTIASASDD----KTVKLWNR-NGQLLQTL 545 (577)
T ss_dssp ET--TSC----EEEEEECCSSCEEEEEECTTSSCEEEEETT----SEEEEECT-TSCEEEEE
T ss_pred cC--CCC----EEEEEeCCCCCEEEEEEcCCCCEEEEEECc----CEEEEEeC-CCCEEEEE
Confidence 55 443 23344432 346777999999987644332 36777775 56544444
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-05 Score=84.19 Aligned_cols=203 Identities=12% Similarity=0.044 Sum_probs=115.7
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
...+.|||||++|||.. + + .+.++|+++++.... +
T Consensus 21 ~~~~~~spdg~~l~~~~-~--~----------------------------------~v~l~~~~~~~~~~~-~------- 55 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCN-G--T----------------------------------SVYTVPVGSLTDTEI-Y------- 55 (611)
T ss_dssp CCCCEECTTSSEEEEEE-T--T----------------------------------EEEEEETTCSSCCEE-E-------
T ss_pred eeEEeeCCCCCEEEeCC-C--C----------------------------------EEEEecCCCcccCeE-e-------
Confidence 45678999999999964 1 1 356788886654332 1
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEee-cCceeeccCccccCCCCCccCCCc--EEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGG--FIWA 160 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 160 (550)
..-...+..++|||||++|+...... .|.+-|+.+++...+.... ....+.. . .|++++ ++..
T Consensus 56 ~~h~~~v~~~~~spdg~~lasg~~d~----~v~lWd~~~~~~~~~~~~~~~~~~v~~---v-------~fs~dg~~l~~~ 121 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCASGDVHG----NVRIWDTTQTTHILKTTIPVFSGPVKD---I-------SWDSESKRIAAV 121 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTS----EEEEEESSSTTCCEEEEEECSSSCEEE---E-------EECTTSCEEEEE
T ss_pred cCCCCceEEEEECCCCcEEEEEeCCC----CEEEeECCCCcceeeEeecccCCceEE---E-------EECCCCCEEEEE
Confidence 22234578899999999988775432 2555566655433222211 1111110 1 244554 3334
Q ss_pred Ecc-CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-
Q 008873 161 SEK-TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG- 238 (550)
Q Consensus 161 s~~-~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~- 238 (550)
++. +....|++.+. +.....+....-.+.... |+|+++.+++++..++. ..|| +.. .+. ....+...
T Consensus 122 ~~~~~~~~~v~~wd~-~~~~~~l~gh~~~v~~v~-f~p~~~~~l~s~s~D~~--v~lw--d~~-~~~----~~~~l~~H~ 190 (611)
T 1nr0_A 122 GEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVD-FKPSRPFRIISGSDDNT--VAIF--EGP-PFK----FKSTFGEHT 190 (611)
T ss_dssp ECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEE-ECSSSSCEEEEEETTSC--EEEE--ETT-TBE----EEEEECCCS
T ss_pred ECCCCceeEEEEeeC-CCCcceecCCCCCceEEE-ECCCCCeEEEEEeCCCe--EEEE--ECC-CCe----Eeeeecccc
Confidence 332 23457888773 333445554444455554 99998865666665543 5566 431 111 12223322
Q ss_pred CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.....+.|+|||+.|+-...+ ..+.+.+..+++....+
T Consensus 191 ~~V~~v~fspdg~~las~s~D----~~i~lwd~~~g~~~~~~ 228 (611)
T 1nr0_A 191 KFVHSVRYNPDGSLFASTGGD----GTIVLYNGVDGTKTGVF 228 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCEEEEC
T ss_pred CceEEEEECCCCCEEEEEECC----CcEEEEECCCCcEeeee
Confidence 236778999999977644333 36788888888765555
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-05 Score=75.93 Aligned_cols=191 Identities=12% Similarity=0.083 Sum_probs=104.4
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC--CCceEEEEEECCCCceEEEEEeecCc
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS--QTKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~--~~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
...+|.+|.++++.+.+... .......++|||||+.|++...+. ...-.+|.++.++|+.+.+.......
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~--------~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA--------EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE--------ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CEEEEEEeCCCCCEEEeecc--------cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 46677778888888766442 011223468999999888876642 23456788898889888776643221
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC-ceeecccc-----c---------CeEEEEEEeEeecCC
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCLGPITE-----G---------DWMVEQIVGVNEASG 200 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~-~~~~~lT~-----~---------~~~~~~~~~~s~dg~ 200 (550)
..+. .. .+ .++++++++..+ ..|.+++++. +....+.. + .-.+..+ .|+|||+
T Consensus 100 ~~p~-----~~----~~-dg~~l~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~spdg~ 167 (361)
T 3scy_A 100 ADPC-----YL----TT-NGKNIVTANYSG-GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV-RITPDGK 167 (361)
T ss_dssp SCEE-----EE----EE-CSSEEEEEETTT-TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE-EECTTSS
T ss_pred CCcE-----EE----EE-CCCEEEEEECCC-CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE-EECCCCC
Confidence 0000 00 12 233555554321 3455555432 22222211 0 0012333 4999999
Q ss_pred EEEEEEcCCCCceeEEEEEEeCCCCC------CCCC---CCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 201 QVYFTGTLDGPLESHLYCAKLYPDWN------HTLE---APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 201 ~l~f~~~~~~~~~~~l~~v~~~~~g~------~~~~---~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
.||+.....+ ...+|.++. .+. .... ....+....+...+.|||||+++++.... ...+.++++
T Consensus 168 ~l~~~~~~~~--~v~v~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~~~ 240 (361)
T 3scy_A 168 YLLADDLGTD--QIHKFNINP--NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI---GGTVIAFRY 240 (361)
T ss_dssp EEEEEETTTT--EEEEEEECT--TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT---TCEEEEEEE
T ss_pred EEEEEeCCCC--EEEEEEEcC--CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC---CCeEEEEEe
Confidence 9998766443 355665543 221 0000 01122333456677999999987666432 246888887
Q ss_pred CCCc
Q 008873 272 QDGS 275 (550)
Q Consensus 272 ~~g~ 275 (550)
.+++
T Consensus 241 ~~g~ 244 (361)
T 3scy_A 241 ADGM 244 (361)
T ss_dssp ETTE
T ss_pred cCCc
Confidence 6664
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-05 Score=82.35 Aligned_cols=203 Identities=12% Similarity=0.068 Sum_probs=117.6
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCC----ce-EEEEcc
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGG----PV-SWMDLQ 77 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~----~~-~~l~~~ 77 (550)
+-.++.|||||++||+.. + . .+.+||++++ +. ..+
T Consensus 20 ~v~~~~~spdg~~l~~~~-~-~-----------------------------------~v~v~~~~~~~~~~~~~~~~--- 59 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-G-K-----------------------------------SAFVRCLDDGDSKVPPVVQF--- 59 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-T-T-----------------------------------EEEEEECCSSCCSSCSEEEE---
T ss_pred ceeEEEECCCCCEEEEec-C-C-----------------------------------eEEEEECCCCCCccccceEE---
Confidence 346789999999999975 1 1 3578899877 43 333
Q ss_pred cCCCCCCCCCce-eEEEEECC--CCeEEEEEEecCCCceEEEEEECCCC------ceEEEEEeec-CceeeccCccccCC
Q 008873 78 CGGTDQNYDEEY-LARVNWMH--GNILTAQVLNRSQTKLKVLKFDIKTG------QRKVILVEEL-DSWVNLHDCFTPLD 147 (550)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~wsp--Dg~~i~~~~~r~~~~~~l~~~~~~~g------~~~~l~~~~~-~~~~~~~~~~~~~~ 147 (550)
...... +..++|+| ||++++...... .|.+.++.++ +.+.+..... ...+.. .
T Consensus 60 ------~~h~~~~v~~~~~sp~~~~~~l~s~~~dg----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~---- 122 (615)
T 1pgu_A 60 ------TGHGSSVVTTVKFSPIKGSQYLCSGDESG----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD---I---- 122 (615)
T ss_dssp ------CTTTTSCEEEEEECSSTTCCEEEEEETTS----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEE---E----
T ss_pred ------ecCCCceEEEEEECcCCCCCEEEEecCCC----EEEEEeCCCCcccccccccccchhhcccccEEE---E----
Confidence 222445 88899999 999888765432 2555555544 3333332221 111110 1
Q ss_pred CCCccCCCc--EEEEEcc-CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC
Q 008873 148 KGVTKYSGG--FIWASEK-TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD 224 (550)
Q Consensus 148 ~~~~~~~~~--~~~~s~~-~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~ 224 (550)
.+++++ ++..+.. ++...|++++ .+.....+....-.+.... |+|+++.+++++..++ ...+| ++. .
T Consensus 123 ---~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~d~--~v~vw--d~~-~ 192 (615)
T 1pgu_A 123 ---SWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACH-LKQSRPMRSMTVGDDG--SVVFY--QGP-P 192 (615)
T ss_dssp ---EECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEE-ECSSSSCEEEEEETTT--EEEEE--ETT-T
T ss_pred ---EEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEE-ECCCCCcEEEEEeCCC--cEEEE--eCC-C
Confidence 234444 3333332 3346788887 3444555555444455554 9999986666666554 24444 551 1
Q ss_pred CCCCCCCCeeeCCC-C---ceEEEEECCC-CCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 225 WNHTLEAPVKLTNG-K---GKHVAVLDHN-MRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 225 g~~~~~~~~~lt~~-~---~~~~~~~s~d-g~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
+. ....+... . ....+.|+|+ ++.++....+ ..+.+.++.+++.+..+
T Consensus 193 ~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 193 FK----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD----RKISCFDGKSGEFLKYI 245 (615)
T ss_dssp BE----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT----CCEEEEETTTCCEEEEC
T ss_pred cc----eeeeecccCCCCceEEEEEECCCCCCEEEEEeCC----CeEEEEECCCCCEeEEe
Confidence 21 22233322 2 3667799999 8877655433 47888998888866666
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.46 E-value=4e-05 Score=74.52 Aligned_cols=214 Identities=9% Similarity=0.010 Sum_probs=115.3
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|||||++||....+ ..|.+||+++++...+..-
T Consensus 11 i~~~~~s~~~~~l~~~~~d------------------------------------~~v~i~~~~~~~~~~~~~~------ 48 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNN------------------------------------HEVHIYEKSGNKWVQVHEL------ 48 (372)
T ss_dssp CCEEEECTTSSEEEEECSS------------------------------------SEEEEEEEETTEEEEEEEE------
T ss_pred eEEEEECCCCCEEEEEeCC------------------------------------CEEEEEeCCCCcEEeeeee------
Confidence 3678999999999875322 2468889998852222110
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEee-cCceeeccCccccCCCCCccCCCc-EEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGG-FIWAS 161 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 161 (550)
......+..++|+|||+.++...... .|.+.++++++........ ....+.. . .+++++ +++..
T Consensus 49 ~~h~~~v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~v~~---~-------~~~~~~~~l~~~ 114 (372)
T 1k8k_C 49 KEHNGQVTGVDWAPDSNRIVTCGTDR----NAYVWTLKGRTWKPTLVILRINRAARC---V-------RWAPNEKKFAVG 114 (372)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTS----CEEEEEEETTEEEEEEECCCCSSCEEE---E-------EECTTSSEEEEE
T ss_pred cCCCCcccEEEEeCCCCEEEEEcCCC----eEEEEECCCCeeeeeEEeecCCCceeE---E-------EECCCCCEEEEE
Confidence 12345678899999999887765332 2566666777654433211 1111100 1 233443 55555
Q ss_pred ccCCccEEEEEeCCCce--eecccc-cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCC-CCC---------CC
Q 008873 162 EKTGFRHLYLHDINGTC--LGPITE-GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP-DWN---------HT 228 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~~--~~~lT~-~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~-~g~---------~~ 228 (550)
..+|.-.||-++..... .+.+.. ....+... .|+++++.|+..+.. + ...+|.+.... ... ..
T Consensus 115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d-g--~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (372)
T 1k8k_C 115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL-DWHPNSVLLAAGSCD-F--KCRIFSAYIKEVEERPAPTPWGSKMP 190 (372)
T ss_dssp ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE-EECTTSSEEEEEETT-S--CEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred eCCCEEEEEEecCCCcceeeeeeecccCCCeeEE-EEcCCCCEEEEEcCC-C--CEEEEEcccccccccccccccccccc
Confidence 55565555555533211 222222 23344554 499999877665543 2 25566432100 000 00
Q ss_pred CC-CCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 229 LE-APVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 229 ~~-~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.. ....+... .....+.|+|+++.|+....+ ..+.++++.+++.+..+.
T Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~ 241 (372)
T 1k8k_C 191 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHD----STVCLADADKKMAVATLA 241 (372)
T ss_dssp TTCEEEECCCCSSCEEEEEECSSSSEEEEEETT----TEEEEEEGGGTTEEEEEE
T ss_pred hhhheEecCCCCCeEEEEEECCCCCEEEEEeCC----CEEEEEECCCCceeEEEc
Confidence 00 12222222 236677899999877655433 478889987777554443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-05 Score=78.91 Aligned_cols=207 Identities=10% Similarity=0.075 Sum_probs=114.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|||||++|+....+. .|.+||..+.....+.
T Consensus 111 v~~~~~s~~~~~l~~~~~dg------------------------------------~i~i~~~~~~~~~~~~-------- 146 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENG------------------------------------ELRLWNKTGALLNVLN-------- 146 (425)
T ss_dssp EEEEEECTTSSEEEEEETTS------------------------------------CEEEEETTSCEEEEEC--------
T ss_pred eEEEEEcCCCCEEEEEeCCC------------------------------------eEEEEeCCCCeeeecc--------
Confidence 46788999999998754321 2567785555444442
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCc--------eeeccCccccCCCCCccCCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDS--------WVNLHDCFTPLDKGVTKYSG 155 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 155 (550)
.....+..+.|+|||+.++...... .|.+.++.+++........... .......... ..+.++
T Consensus 147 -~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 217 (425)
T 1r5m_A 147 -FHRAPIVSVKWNKDGTHIISMDVEN----VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD----VEWVDD 217 (425)
T ss_dssp -CCCSCEEEEEECTTSSEEEEEETTC----CEEEEETTTTEEEEEECCC---------------CCCBSC----CEEEET
T ss_pred -CCCccEEEEEECCCCCEEEEEecCC----eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE----EEEcCC
Confidence 2245678899999999887765432 3788888888754433221110 0000000000 123444
Q ss_pred cEEEEEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCee
Q 008873 156 GFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK 234 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~ 234 (550)
+.++....+| .|++++..+++.. .+......+... .|+++++.|+..+.. + ...+| ++. .+. ....
T Consensus 218 ~~~~~~~~~g--~i~~~d~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d-~--~i~i~--d~~-~~~----~~~~ 284 (425)
T 1r5m_A 218 DKFVIPGPKG--AIFVYQITEKTPTGKLIGHHGPISVL-EFNDTNKLLLSASDD-G--TLRIW--HGG-NGN----SQNC 284 (425)
T ss_dssp TEEEEECGGG--CEEEEETTCSSCSEEECCCSSCEEEE-EEETTTTEEEEEETT-S--CEEEE--CSS-SBS----CSEE
T ss_pred CEEEEEcCCC--eEEEEEcCCCceeeeeccCCCceEEE-EECCCCCEEEEEcCC-C--EEEEE--ECC-CCc----cceE
Confidence 5444443333 5778887665432 333333345554 499999877655543 2 13444 552 221 3344
Q ss_pred eCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 235 LTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 235 lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
+.. ......+.|+|++ .++....+ ..+.++++.+++....+.
T Consensus 285 ~~~~~~~i~~~~~~~~~-~l~~~~~d----~~i~i~d~~~~~~~~~~~ 327 (425)
T 1r5m_A 285 FYGHSQSIVSASWVGDD-KVISCSMD----GSVRLWSLKQNTLLALSI 327 (425)
T ss_dssp ECCCSSCEEEEEEETTT-EEEEEETT----SEEEEEETTTTEEEEEEE
T ss_pred ecCCCccEEEEEECCCC-EEEEEeCC----CcEEEEECCCCcEeEecc
Confidence 442 2346777899999 44433222 488999988777554443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.7e-05 Score=74.98 Aligned_cols=163 Identities=12% Similarity=0.057 Sum_probs=89.6
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceeeccCccccCCCCCccCCCc-EEEEEccCCc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGF 166 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~ 166 (550)
.+..++|||||+.|+++.... ..-.||.++..+++...... ......+.. + .|++++ +++....+|
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~---~-------~~sp~~~~l~~~~~~g- 171 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRPNA---I-------SIAEDDTTVIIADKFG- 171 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCEEE---E-------EECTTSSEEEEEETTS-
T ss_pred ceEEEEEcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCceE---E-------EEcCCCCEEEEEeCCC-
Confidence 578899999999875554433 23345555433666544433 221111110 1 234544 555554444
Q ss_pred cEEEEEeCCCceee-----cccccCeEEEEEEeEeec---CCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC-C
Q 008873 167 RHLYLHDINGTCLG-----PITEGDWMVEQIVGVNEA---SGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-N 237 (550)
Q Consensus 167 ~~l~~~~~~~~~~~-----~lT~~~~~~~~~~~~s~d---g~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt-~ 237 (550)
.++++++.+++.. .+......+... .|+|+ ++.|+ ++..++ ...+| ++. .+. ....+. .
T Consensus 172 -~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~sp~~~~~~~l~-s~~~d~--~i~vw--d~~-~~~----~~~~~~~~ 239 (450)
T 2vdu_B 172 -DVYSIDINSIPEEKFTQEPILGHVSMLTDV-HLIKDSDGHQFII-TSDRDE--HIKIS--HYP-QCF----IVDKWLFG 239 (450)
T ss_dssp -EEEEEETTSCCCSSCCCCCSEECSSCEEEE-EEEECTTSCEEEE-EEETTS--CEEEE--EES-CTT----CEEEECCC
T ss_pred -cEEEEecCCcccccccceeeecccCceEEE-EEcCCCCCCcEEE-EEcCCC--cEEEE--ECC-CCc----eeeeeecC
Confidence 5788887654432 333333345555 49999 65554 444443 24555 552 222 223322 2
Q ss_pred -CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 238 -GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 238 -~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
......+.|+ |+++|+....+ ..+.+.++.+++.+..+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d----~~v~vwd~~~~~~~~~~ 278 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGD----DKIFAWDWKTGKNLSTF 278 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESS----SEEEEEETTTCCEEEEE
T ss_pred CCCceEEEEEC-CCCEEEEEeCC----CeEEEEECCCCcEeeee
Confidence 2346777899 99887654322 48999999888765554
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.4e-05 Score=74.77 Aligned_cols=185 Identities=10% Similarity=0.019 Sum_probs=100.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+.........+ ......+..+.|+|||+.++...... .|.+.|+.+++......... ..+.
T Consensus 197 ~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~d~----~v~iwd~~~~~~~~~~~~~~-~~v~- 263 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTL-------QGHSSEVCGLAWRSDGLQLASGGNDN----VVQIWDARSSIPKFTKTNHN-AAVK- 263 (401)
T ss_dssp EEEEEETTSSSCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTCSSEEEEECCCS-SCCC-
T ss_pred CEEEEecccCcceeeEE-------cCCCCCeeEEEEcCCCCEEEEEeCCC----eEEEccCCCCCccEEecCCc-ceEE-
Confidence 57788888433322222 22345678899999999887765433 37888888887654332111 1110
Q ss_pred cCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEc-CCCCceeEE
Q 008873 140 HDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT-LDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~-~~~~~~~~l 216 (550)
.+ .|++++ ++..........|.+++..+++..........+... .|+++++.|+..+. .++ ...+
T Consensus 264 --~~-------~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~g~~dg--~i~v 331 (401)
T 4aez_A 264 --AV-------AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL-IWSPHSKEIMSTHGFPDN--NLSI 331 (401)
T ss_dssp --EE-------EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEE-EECSSSSEEEEEECTTTC--EEEE
T ss_pred --EE-------EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE-EECCCCCeEEEEeecCCC--cEEE
Confidence 01 234432 444432112346888887665543222233345555 49999998887753 333 3555
Q ss_pred EEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeE
Q 008873 217 YCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVL 278 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~ 278 (550)
|.+.. +.. .....+.. ......+.|+|||++|+....+ ..+.+.++.+++.+.
T Consensus 332 ~~~~~---~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d----g~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 332 WSYSS---SGL--TKQVDIPAHDTRVLYSALSPDGRILSTAASD----ENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEET---TEE--EEEEEEECCSSCCCEEEECTTSSEEEEECTT----SEEEEEECCC-----
T ss_pred EecCC---ccc--eeEEEecCCCCCEEEEEECCCCCEEEEEeCC----CcEEEEECCCCcccc
Confidence 54432 110 01112222 2336667899999987655333 478888887776443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.44 E-value=7e-05 Score=72.96 Aligned_cols=201 Identities=13% Similarity=0.056 Sum_probs=105.2
Q ss_pred CCCeEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC
Q 008873 55 SNVKVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 134 (550)
Q Consensus 55 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~ 134 (550)
.+...++|-++...++...+...... .....+.+...++|||||++++....... ..|.+.|+++++..........
T Consensus 102 ~d~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~fSpDg~~la~as~~~d--~~i~iwd~~~~~~~~~~~~~~~ 178 (365)
T 4h5i_A 102 GNKHLRKFKYDKVNDQLEFLTSVDFD-ASTNADDYTKLVYISREGTVAAIASSKVP--AIMRIIDPSDLTEKFEIETRGE 178 (365)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEECSS-CCCCTTCCEEEEEECTTSSCEEEEESCSS--CEEEEEETTTTEEEEEEECSSC
T ss_pred CCCcEEEEEecCCCceEEEeeeecee-ecCCcccCEEEEEEcCCCCEEEEEECCCC--CEEEEeECCCCcEEEEeCCCCc
Confidence 34445555555544444433221100 11233456778899999998876653322 2477778999886554433222
Q ss_pred ceeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCc-eeeccc--ccCeEEEEEEeEeecCCEEEEEEcCCC
Q 008873 135 SWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGT-CLGPIT--EGDWMVEQIVGVNEASGQVYFTGTLDG 210 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~-~~~~lT--~~~~~~~~~~~~s~dg~~l~f~~~~~~ 210 (550)
.+ . . .+++|+ ++.....+ .+.+++...+ .....+ .....+.... |+|||+.++..+...+
T Consensus 179 V~--~---v-------~fspdg~~l~s~s~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 179 VK--D---L-------HFSTDGKVVAYITGS---SLEVISTVTGSCIARKTDFDKNWSLSKIN-FIADDTVLIAASLKKG 242 (365)
T ss_dssp CC--E---E-------EECTTSSEEEEECSS---CEEEEETTTCCEEEEECCCCTTEEEEEEE-EEETTEEEEEEEESSS
T ss_pred eE--E---E-------EEccCCceEEeccce---eEEEEEeccCcceeeeecCCCCCCEEEEE-EcCCCCEEEEEecCCc
Confidence 11 0 1 245555 44333222 3445554333 322222 2345566554 9999987776665443
Q ss_pred CceeEEEEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 211 PLESHLYCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 211 ~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
. ...++..++. .+.........+.. ......+.|||||++|+....+ ..+.+.|+.+++.++.+
T Consensus 243 ~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D----~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 243 K-GIVLTKISIK-SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND----NSIALVKLKDLSMSKIF 307 (365)
T ss_dssp C-CEEEEEEEEE-TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT----SCEEEEETTTTEEEEEE
T ss_pred c-eeEEeecccc-cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC----CEEEEEECCCCcEEEEe
Confidence 2 2345555541 11100001112222 2346778999999987655433 36888999888766554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-05 Score=78.01 Aligned_cols=186 Identities=10% Similarity=0.054 Sum_probs=105.6
Q ss_pred EEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECC-CCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-cee
Q 008873 61 LGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWV 137 (550)
Q Consensus 61 l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wsp-Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~ 137 (550)
|.+||+++++... +.+ ..-...+..++|+| |+.+|+...... .|.+.|++++..+.+...... .++
T Consensus 144 i~lWd~~~~~~~~~~~~-------~gH~~~V~~l~f~p~~~~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~~ 212 (435)
T 4e54_B 144 IMLWNFGIKDKPTFIKG-------IGAGGSITGLKFNPLNTNQFYASSMEG----TTRLQDFKGNILRVFASSDTINIWF 212 (435)
T ss_dssp EEEECSSCCSCCEEECC-------CSSSCCCCEEEECSSCTTEEEEECSSS----CEEEEETTSCEEEEEECCSSCSCCC
T ss_pred EEEEECCCCCceeEEEc-------cCCCCCEEEEEEeCCCCCEEEEEeCCC----EEEEeeccCCceeEEeccCCCCccE
Confidence 6788998776433 322 12244678899998 677776654332 255567877765554432211 111
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
. .+ .+++++ +++....+| .|.++++++.+...+......+.... |+|+++.+++++..++. ..|
T Consensus 213 ~---~~-------~~~~~~~~l~~g~~dg--~i~~wd~~~~~~~~~~~h~~~v~~v~-~~p~~~~~~~s~s~d~~--v~i 277 (435)
T 4e54_B 213 C---SL-------DVSASSRMVVTGDNVG--NVILLNMDGKELWNLRMHKKKVTHVA-LNPCCDWFLATASVDQT--VKI 277 (435)
T ss_dssp C---CE-------EEETTTTEEEEECSSS--BEEEEESSSCBCCCSBCCSSCEEEEE-ECTTCSSEEEEEETTSB--CCE
T ss_pred E---EE-------EECCCCCEEEEEeCCC--cEeeeccCcceeEEEecccceEEeee-ecCCCceEEEEecCcce--eeE
Confidence 0 01 234444 555555555 56777877776666665554566554 99999877777766553 455
Q ss_pred EEEEeCCCCCCCCCCCeeeC-CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 217 YCAKLYPDWNHTLEAPVKLT-NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt-~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
| ++. .+... ....... .......+.|+|||++|+....+ ..+.+.++.+++....+
T Consensus 278 w--d~~-~~~~~-~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D----~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 278 W--DLR-QVRGK-ASFLYSLPHRHPVNAACFSPDGARLLTTDQK----SEIRVYSASQWDCPLGL 334 (435)
T ss_dssp E--ETT-TCCSS-SCCSBCCBCSSCEEECCBCTTSSEEEEEESS----SCEEEEESSSSSSEEEE
T ss_pred E--ecc-ccccc-ceEEEeeeccccccceeECCCCCeeEEEcCC----CEEEEEECCCCccceEE
Confidence 5 552 11100 0111111 12235667899999987654433 36888888777654444
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-06 Score=82.89 Aligned_cols=207 Identities=6% Similarity=-0.037 Sum_probs=103.4
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|||||++||....+ + .|.+||+.++....+.. +
T Consensus 14 v~~~~~s~~g~~l~~~~~d-~-----------------------------------~i~iw~~~~~~~~~~~~------~ 51 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTAT-N-----------------------------------QVELYEQDGNGWKHART------F 51 (377)
T ss_dssp CSCCEECSSSSEEECCCSS-S-----------------------------------CBCEEEEETTEEEECCC------B
T ss_pred EEEEEECCCCCEEEEecCC-C-----------------------------------EEEEEEccCCceEEEEE------E
Confidence 4678999999988764322 1 24677888774332211 1
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc-eEEEEEee-cCceeeccCccccCCCCCccCCCc-EEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-RKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGG-FIWA 160 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (550)
......+..++|+|||++|+....... |.+.++.+++ .+.+.... ....+. .+ .+++++ +++.
T Consensus 52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~----v~vwd~~~~~~~~~~~~~~~~~~~v~---~~-------~~~~~~~~l~~ 117 (377)
T 3dwl_C 52 SDHDKIVTCVDWAPKSNRIVTCSQDRN----AYVYEKRPDGTWKQTLVLLRLNRAAT---FV-------RWSPNEDKFAV 117 (377)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEETTSS----EEEC------CCCCEEECCCCSSCEE---EE-------ECCTTSSCCEE
T ss_pred ecCCceEEEEEEeCCCCEEEEEeCCCe----EEEEEcCCCCceeeeeEecccCCceE---EE-------EECCCCCEEEE
Confidence 233456888999999998877654322 6666677665 11111111 111110 01 234443 4444
Q ss_pred EccCCccEEEEEeCCCce----eecccc-cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCC-CCCC-------
Q 008873 161 SEKTGFRHLYLHDINGTC----LGPITE-GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYP-DWNH------- 227 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~~----~~~lT~-~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~-~g~~------- 227 (550)
...+| .|.++++++++ .+.+.. ....+..+. |+|+++.|+..+.+. ...+|.+.... ....
T Consensus 118 ~~~d~--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~ 191 (377)
T 3dwl_C 118 GSGAR--VISVCYFEQENDWWVSKHLKRPLRSTILSLD-WHPNNVLLAAGCADR---KAYVLSAYVRDVDAKPEASVWGS 191 (377)
T ss_dssp EESSS--CEEECCC-----CCCCEEECSSCCSCEEEEE-ECTTSSEEEEEESSS---CEEEEEECCSSCC-CCCSCSSCS
T ss_pred EecCC--eEEEEEECCcccceeeeEeecccCCCeEEEE-EcCCCCEEEEEeCCC---EEEEEEEEecccCCCcccccccc
Confidence 33344 45666665554 344544 344455554 999998777665543 25666553200 0000
Q ss_pred --CCCC-CeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 228 --TLEA-PVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 228 --~~~~-~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
+..+ ...+........+.|+||+++|+....+ ..+.+.++.+++.
T Consensus 192 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 192 RLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD----SSVTIAYPSAPEQ 239 (377)
T ss_dssp CCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT----TEEC-CEECSTTS
T ss_pred ccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC----CcEEEEECCCCCC
Confidence 0000 1111112236777899999977655433 3778888776654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=9.1e-05 Score=72.95 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=81.2
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCc
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGF 166 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~ 166 (550)
.++..++|||||++++...... .|.+.++++++.......... .+.. + .+++++ .++....+|
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~----~i~iwd~~~~~~~~~~~~h~~-~v~~---~-------~~~p~~~~l~s~s~d~- 187 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDR----LIRIWDIENRKIVMILQGHEQ-DIYS---L-------DYFPSGDKLVSGSGDR- 187 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTS----CEEEEETTTTEEEEEECCCSS-CEEE---E-------EECTTSSEEEEEETTS-
T ss_pred eeEEEEEECCCCCEEEEEcCCC----eEEEEECCCCcEEEEEccCCC-CEEE---E-------EEcCCCCEEEEecCCC-
Confidence 3578899999999888765433 377778888876543321111 1100 1 233433 444443344
Q ss_pred cEEEEEeCCCceeecccccCeEEEEEEeEee-cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee-------CC-
Q 008873 167 RHLYLHDINGTCLGPITEGDWMVEQIVGVNE-ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-------TN- 237 (550)
Q Consensus 167 ~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~-dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l-------t~- 237 (550)
.|.++|+.+++..........+... .++| +|+.|+.. ..++. ..+| ++. .+. ....+ ..
T Consensus 188 -~v~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~-s~d~~--v~iw--d~~-~~~----~~~~~~~~~~~~~~h 255 (393)
T 1erj_A 188 -TVRIWDLRTGQCSLTLSIEDGVTTV-AVSPGDGKYIAAG-SLDRA--VRVW--DSE-TGF----LVERLDSENESGTGH 255 (393)
T ss_dssp -EEEEEETTTTEEEEEEECSSCEEEE-EECSTTCCEEEEE-ETTSC--EEEE--ETT-TCC----EEEEEC------CCC
T ss_pred -cEEEEECCCCeeEEEEEcCCCcEEE-EEECCCCCEEEEE-cCCCc--EEEE--ECC-CCc----EEEeecccccCCCCC
Confidence 5667787766543222222223333 4788 66655544 44332 4555 541 221 11222 11
Q ss_pred CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 238 ~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
......+.|+|||+.|+....+ ..+.+.++.++
T Consensus 256 ~~~v~~v~~~~~g~~l~s~s~d----~~v~~wd~~~~ 288 (393)
T 1erj_A 256 KDSVYSVVFTRDGQSVVSGSLD----RSVKLWNLQNA 288 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETT----SEEEEEEC---
T ss_pred CCCEEEEEECCCCCEEEEEeCC----CEEEEEECCCC
Confidence 1236677999999987544322 36777777544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-05 Score=82.87 Aligned_cols=158 Identities=10% Similarity=0.044 Sum_probs=90.0
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||..+.....+. .....+..++||||++.++...... .|.+.+..+...+.+........ .
T Consensus 408 ~v~~~~~~~~~~~~~~---------~~~~~v~~~~~s~d~~~l~~~~~d~----~v~~w~~~~~~~~~~~~~~~~v~-~- 472 (577)
T 2ymu_A 408 TVKLWNRNGQLLQTLT---------GHSSSVWGVAFSPDDQTIASASDDK----TVKLWNRNGQLLQTLTGHSSSVR-G- 472 (577)
T ss_dssp EEEEECTTCCEEEEEE---------CCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTSCEEEEEECCSSCEE-E-
T ss_pred EEEEEeCCCCEEEEec---------CCCCCeEEEEECCCCCEEEEEcCCC----EEEEEECCCCEEEEEcCCCCCEE-E-
Confidence 3567786655444442 2234577899999999887765332 35666665544444433222211 0
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
. .+++++ ++.....++ .|.+++.++...+.+....-.+.... |+|||+.|+..+ .++ ...||
T Consensus 473 ---~-------~~spd~~~las~~~d~--~i~iw~~~~~~~~~~~~h~~~v~~l~-~s~dg~~l~s~~-~dg--~v~lw- 535 (577)
T 2ymu_A 473 ---V-------AFSPDGQTIASASDDK--TVKLWNRNGQLLQTLTGHSSSVRGVA-FSPDGQTIASAS-DDK--TVKLW- 535 (577)
T ss_dssp ---E-------EECTTSCEEEEEETTS--EEEEEETTSCEEEEEECCSSCEEEEE-ECTTSSCEEEEE-TTS--EEEEE-
T ss_pred ---E-------EEcCCCCEEEEEeCCC--EEEEEcCCCCEEEEEeCCCCCEEEEE-EcCCCCEEEEEE-CcC--EEEEE-
Confidence 1 234444 555444444 46666777766667765555566654 999998776544 333 24555
Q ss_pred EEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEe
Q 008873 219 AKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~ 256 (550)
+. ++. ....+.. ......+.|+|||++|+-.
T Consensus 536 -d~--~~~----~~~~~~~h~~~v~~~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 536 -NR--NGQ----LLQTLTGHSSSVWGVAFSPDGQTIASA 567 (577)
T ss_dssp -CT--TSC----EEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred -eC--CCC----EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 54 442 2334433 2346778999999987643
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00015 Score=71.35 Aligned_cols=185 Identities=15% Similarity=0.098 Sum_probs=98.4
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
|.+||+++++.... + ......+..++|+|||+.++...... .|.+.|+.+++............ .
T Consensus 147 i~iwd~~~~~~~~~-~-------~~h~~~v~~~~~~p~~~~l~s~s~d~----~v~iwd~~~~~~~~~~~~~~~v~-~-- 211 (393)
T 1erj_A 147 IRIWDIENRKIVMI-L-------QGHEQDIYSLDYFPSGDKLVSGSGDR----TVRIWDLRTGQCSLTLSIEDGVT-T-- 211 (393)
T ss_dssp EEEEETTTTEEEEE-E-------CCCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECSSCEE-E--
T ss_pred EEEEECCCCcEEEE-E-------ccCCCCEEEEEEcCCCCEEEEecCCC----cEEEEECCCCeeEEEEEcCCCcE-E--
Confidence 67889998876433 2 22345678899999999887665332 36777888887654443222110 0
Q ss_pred CccccCCCCCccCC-Cc-EEEEEccCCccEEEEEeCCCcee-ecc-------cccCeEEEEEEeEeecCCEEEEEEcCCC
Q 008873 141 DCFTPLDKGVTKYS-GG-FIWASEKTGFRHLYLHDINGTCL-GPI-------TEGDWMVEQIVGVNEASGQVYFTGTLDG 210 (550)
Q Consensus 141 ~~~~~~~~~~~~~~-~~-~~~~s~~~g~~~l~~~~~~~~~~-~~l-------T~~~~~~~~~~~~s~dg~~l~f~~~~~~ 210 (550)
. .+++ ++ +++....+|. |.++|..+++. +.+ +...-.+... .|+++|+.|+..+ .++
T Consensus 212 --~-------~~~~~~~~~l~~~s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~~~~g~~l~s~s-~d~ 278 (393)
T 1erj_A 212 --V-------AVSPGDGKYIAAGSLDRA--VRVWDSETGFLVERLDSENESGTGHKDSVYSV-VFTRDGQSVVSGS-LDR 278 (393)
T ss_dssp --E-------EECSTTCCEEEEEETTSC--EEEEETTTCCEEEEEC------CCCSSCEEEE-EECTTSSEEEEEE-TTS
T ss_pred --E-------EEECCCCCEEEEEcCCCc--EEEEECCCCcEEEeecccccCCCCCCCCEEEE-EECCCCCEEEEEe-CCC
Confidence 0 1222 33 5554444453 55566655432 233 1222234444 4899998776444 333
Q ss_pred CceeEEEEEEeCCCCCCC------CCC-CeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 211 PLESHLYCAKLYPDWNHT------LEA-PVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 211 ~~~~~l~~v~~~~~g~~~------~~~-~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
...||.+.. ..... ... ...+.. ......+.+++++++|+....+ ..+.+.+..+++.+..+.
T Consensus 279 --~v~~wd~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D----~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 279 --SVKLWNLQN--ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD----RGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp --EEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT----SEEEEEETTTCCEEEEEE
T ss_pred --EEEEEECCC--CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC----CeEEEEECCCCeEEEEEC
Confidence 255554321 11000 000 011111 1235667899999877543322 478888988877554443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-05 Score=73.96 Aligned_cols=158 Identities=11% Similarity=0.103 Sum_probs=91.1
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.+..|+|||++|.|+-... ..|+.++.+ ++...+...
T Consensus 48 egp~~~~~g~~l~~~d~~~-----------------------------------~~i~~~~~~-g~~~~~~~~------- 84 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLVG-----------------------------------RRVLGWRED-GTVDVLLDA------- 84 (305)
T ss_dssp EEEEEEGGGTEEEEEETTT-----------------------------------TEEEEEETT-SCEEEEEES-------
T ss_pred cCCeEeCCCCEEEEEECCC-----------------------------------CEEEEEeCC-CCEEEEeCC-------
Confidence 5788999999998863321 136777874 545444321
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc-
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK- 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~- 163 (550)
......+.|+|||++++... . ...|++++.+ |+.+.+.......-. -.+. ....++++-+|++|.
T Consensus 85 --~~~~~gl~~d~dG~l~v~~~-~---~~~v~~~~~~-g~~~~~~~~~~~~~~-----~~~~--~i~~d~dG~l~~td~~ 150 (305)
T 3dr2_A 85 --TAFTNGNAVDAQQRLVHCEH-G---RRAITRSDAD-GQAHLLVGRYAGKRL-----NSPN--DLIVARDGAIWFTDPP 150 (305)
T ss_dssp --CSCEEEEEECTTSCEEEEET-T---TTEEEEECTT-SCEEEEECEETTEEC-----SCCC--CEEECTTSCEEEECCS
T ss_pred --CCccceeeECCCCCEEEEEC-C---CCEEEEECCC-CCEEEEEeccCCCcc-----CCCC--CEEECCCCCEEEeCcC
Confidence 23456789999999554432 1 1258899887 776666533211000 0000 012355664555431
Q ss_pred ---------------CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCC-CceeEEEEEEe
Q 008873 164 ---------------TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG-PLESHLYCAKL 221 (550)
Q Consensus 164 ---------------~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~-~~~~~l~~v~~ 221 (550)
.+...||+++.++++.+.++ +......+ .|++||+.||+...... .....|+++++
T Consensus 151 ~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl-~~spdg~~lyv~~~~~~~~~~~~i~~~~~ 222 (305)
T 3dr2_A 151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL-AFSPDEQTLYVSQTPEQGHGSVEITAFAW 222 (305)
T ss_dssp GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE-EECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce-EEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence 12368999998777777665 32122334 49999999998866421 00135666665
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.35 E-value=8.2e-05 Score=70.38 Aligned_cols=204 Identities=13% Similarity=0.138 Sum_probs=111.9
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE-EEEcccCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGT 81 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~ 81 (550)
+-.++.|||||++|+-...+ ..+.+||+++++.. .+.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~d------------------------------------g~v~lWd~~~~~~~~~~~------ 52 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYS------------------------------------GRVELWNYETQVEVRSIQ------ 52 (304)
T ss_dssp CEEEEEECSSSSEEEEEETT------------------------------------SEEEEEETTTTEEEEEEE------
T ss_pred ceEEEEECCCCCEEEEEcCC------------------------------------CcEEEEECCCCceeEEee------
Confidence 34678999999998765433 13678899987653 332
Q ss_pred CCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEE
Q 008873 82 DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWA 160 (550)
Q Consensus 82 ~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (550)
.....+....|+|||+.++...... .|.+.++.+|+........ ...+.. . .+++++ +++.
T Consensus 53 ---~~~~~v~~~~~~~~~~~l~s~s~d~----~i~vwd~~~~~~~~~~~~h-~~~v~~---~-------~~~~~~~~l~s 114 (304)
T 2ynn_A 53 ---VTETPVRAGKFIARKNWIIVGSDDF----RIRVFNYNTGEKVVDFEAH-PDYIRS---I-------AVHPTKPYVLS 114 (304)
T ss_dssp ---CCSSCEEEEEEEGGGTEEEEEETTS----EEEEEETTTCCEEEEEECC-SSCEEE---E-------EECSSSSEEEE
T ss_pred ---ccCCcEEEEEEeCCCCEEEEECCCC----EEEEEECCCCcEEEEEeCC-CCcEEE---E-------EEcCCCCEEEE
Confidence 2234577889999999887765432 3777788888764433221 111110 1 123443 5555
Q ss_pred EccCCccEEEEEeCCCc-ee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 161 SEKTGFRHLYLHDINGT-CL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~-~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
...+|. |.+.+..++ .. +.+......+... .|+|++..+++++..++ ...+| ++. .+. ....+...
T Consensus 115 gs~D~~--v~lWd~~~~~~~~~~~~~h~~~v~~v-~~~p~~~~~l~sgs~D~--~v~iw--d~~-~~~----~~~~~~~~ 182 (304)
T 2ynn_A 115 GSDDLT--VKLWNWENNWALEQTFEGHEHFVMCV-AFNPKDPSTFASGCLDR--TVKVW--SLG-QST----PNFTLTTG 182 (304)
T ss_dssp EETTSC--EEEEEGGGTTEEEEEECCCCSCEEEE-EECTTCTTEEEEEETTS--EEEEE--ETT-CSS----CSEEEECC
T ss_pred ECCCCe--EEEEECCCCcchhhhhcccCCcEEEE-EECCCCCCEEEEEeCCC--eEEEE--ECC-CCC----ccceeccC
Confidence 444554 445554443 22 2333333344444 48885434444555544 24555 552 121 22233221
Q ss_pred --CceEEEEECC--CCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 239 --KGKHVAVLDH--NMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 239 --~~~~~~~~s~--dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
.+.....++| ++++|+....+ ..+.+.|+.+++.+..+..
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~s~s~D----~~i~iWd~~~~~~~~~~~~ 226 (304)
T 2ynn_A 183 QERGVNYVDYYPLPDKPYMITASDD----LTIKIWDYQTKSCVATLEG 226 (304)
T ss_dssp CTTCEEEEEECCSTTCCEEEEEETT----SEEEEEETTTTEEEEEEEC
T ss_pred CcCcEEEEEEEEcCCCCEEEEEcCC----CeEEEEeCCCCccceeeCC
Confidence 2345556665 66665433222 4788889888876655544
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.4e-06 Score=75.33 Aligned_cols=147 Identities=16% Similarity=0.075 Sum_probs=87.3
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeec-ccc---cccc-h-------hHhHHHHhCCcEEE
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC-DSW---INTV-D-------MRAQYLRSKGILVW 366 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~---~~~~-~-------~~~~~l~~~G~~vv 366 (550)
..+.+....+..+..|++..... +.+.|++++++|||+...+. ..+ ++.. . .....+ .+-..++
T Consensus 22 Gy~~v~~~~~~~lFywf~es~~~---~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW-~~~anvl 97 (255)
T 1whs_A 22 GYITVDEGAGRSLFYLLQEAPED---AQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRW-NKVANVL 97 (255)
T ss_dssp EEEEEETTTTEEEEEEEECCCGG---GCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCG-GGTSEEE
T ss_pred EEEECCCCCCcEEEEEEEEecCC---CCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCcccc-cccCCEE
Confidence 45666655678899998876432 25679999999999986542 111 1100 0 000001 1237899
Q ss_pred EECC-CCCCCCchhhHHHHhhccC-CCchHHHHHHHHHH-HHcCCCCCCceEEEEechhHHHHHHHHhh----C--CCee
Q 008873 367 KLDN-RGTARRGLKFEASIKHNCG-RIDAEDQLTGAEWL-IKQGLAKVGHIGLYGWSYGGYLSAITLAR----F--PDVF 437 (550)
Q Consensus 367 ~~d~-rG~g~~~~~~~~~~~~~~~-~~~~~D~~~~~~~l-~~~~~~d~~~i~i~G~S~GG~~a~~~~~~----~--~~~~ 437 (550)
.+|. .|.|.|-....... ...+ ....+|+..+++.. .+.+.....++.|+|.||||..+..+|.. . .-.+
T Consensus 98 fiDqPvGtGfSy~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inL 176 (255)
T 1whs_A 98 FLDSPAGVGFSYTNTSSDI-YTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINL 176 (255)
T ss_dssp EECCSTTSTTCEESSGGGG-GSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEE
T ss_pred EEecCCCCccCCCcCcccc-ccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCccccc
Confidence 9994 68886522111000 0001 11245565665543 33454556789999999999988776642 1 2357
Q ss_pred EEEEEcCCcCCcc
Q 008873 438 QCAVSGAPVTSWD 450 (550)
Q Consensus 438 ~~~v~~~~~~~~~ 450 (550)
+++++++|++|..
T Consensus 177 kGi~ign~~~d~~ 189 (255)
T 1whs_A 177 KGFMVGNGLIDDY 189 (255)
T ss_dssp EEEEEEEECCBHH
T ss_pred ceEEecCCccCHH
Confidence 9999999998753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.7e-05 Score=71.30 Aligned_cols=188 Identities=11% Similarity=0.031 Sum_probs=97.9
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEE-EEcccCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQ 83 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~ 83 (550)
..+.|||||++||-...|. .|.+||+++++... ..+.
T Consensus 20 ~~l~~sp~g~~las~~~D~------------------------------------~i~iw~~~~~~~~~~~~~~------ 57 (345)
T 3fm0_A 20 WFLAWNPAGTLLASCGGDR------------------------------------RIRIWGTEGDSWICKSVLS------ 57 (345)
T ss_dssp EEEEECTTSSCEEEEETTS------------------------------------CEEEEEEETTEEEEEEEEC------
T ss_pred EEEEECCCCCEEEEEcCCC------------------------------------eEEEEEcCCCcceeeeeec------
Confidence 5688999999998764431 25677888775332 1111
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-ceeeccCccccCCCCCccCCCc-EEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGVTKYSGG-FIWAS 161 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~s 161 (550)
..-...+..++|||||++|+...... ...||. ..+++.+.+...... ..+.. . .|++++ +++..
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~--~v~iw~--~~~~~~~~~~~~~~h~~~v~~---v-------~~sp~~~~l~s~ 123 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDA--TTCIWK--KNQDDFECVTTLEGHENEVKS---V-------AWAPSGNLLATC 123 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTS--CEEEEE--ECCC-EEEEEEECCCSSCEEE---E-------EECTTSSEEEEE
T ss_pred cccCCcEEEEEECCCCCEEEEEECCC--cEEEEE--ccCCCeEEEEEccCCCCCceE---E-------EEeCCCCEEEEE
Confidence 12245688899999999887765443 223454 444544333332211 11110 1 234444 55554
Q ss_pred ccCCccEEEEEeCCCc-e-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-C
Q 008873 162 EKTGFRHLYLHDINGT-C-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-G 238 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~-~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~ 238 (550)
..+|.-.||-++.... + ...+......+... .|+|+++.|+..+.+ + ...||.+.. ... .....+.. .
T Consensus 124 s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~~p~~~~l~s~s~d-~--~i~~w~~~~--~~~---~~~~~~~~h~ 194 (345)
T 3fm0_A 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV-VWHPSQELLASASYD-D--TVKLYREEE--DDW---VCCATLEGHE 194 (345)
T ss_dssp ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE-EECSSSSCEEEEETT-S--CEEEEEEET--TEE---EEEEEECCCS
T ss_pred ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE-EECCCCCEEEEEeCC-C--cEEEEEecC--CCE---EEEEEecCCC
Confidence 4555444444432111 1 22333333345554 499999876655443 3 256775442 110 00112222 2
Q ss_pred CceEEEEECCCCCEEEEee
Q 008873 239 KGKHVAVLDHNMRNFVDFH 257 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~ 257 (550)
.....+.|+|+|++|+...
T Consensus 195 ~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 195 STVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp SCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEECCCCCEEEEEe
Confidence 2367779999999876443
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-06 Score=81.80 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCceee----cccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHH--
Q 008873 329 KTLISVYGGPCVQLV----CDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW-- 402 (550)
Q Consensus 329 P~vv~~hGg~~~~~~----~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~-- 402 (550)
|.||++||..+.... ...|......+++.|+++||.|+++|++|+|.+... ..++...++.
T Consensus 7 ~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G~s~~~-------------a~~l~~~i~~~~ 73 (387)
T 2dsn_A 7 APIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDR-------------ACEAYAQLVGGT 73 (387)
T ss_dssp CCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSBCHHHH-------------HHHHHHHHHCEE
T ss_pred CcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCCCcccc-------------HHHHHHHHHhhh
Confidence 457789996553210 012321110235889999999999999998754221 0111111110
Q ss_pred ------HHHc-----------C----CCCCCceEEEEechhHHHHHHHHhh-------------------CC------Ce
Q 008873 403 ------LIKQ-----------G----LAKVGHIGLYGWSYGGYLSAITLAR-------------------FP------DV 436 (550)
Q Consensus 403 ------l~~~-----------~----~~d~~~i~i~G~S~GG~~a~~~~~~-------------------~~------~~ 436 (550)
+.+. . ....+++.|+||||||.++..++.. +| ++
T Consensus 74 vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~~ 153 (387)
T 2dsn_A 74 VDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHHF 153 (387)
T ss_dssp EECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCC
T ss_pred hhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccccc
Confidence 1100 0 0234789999999999999998872 35 68
Q ss_pred eEEEEEcCCcC
Q 008873 437 FQCAVSGAPVT 447 (550)
Q Consensus 437 ~~~~v~~~~~~ 447 (550)
++.+|.+++..
T Consensus 154 V~sLV~i~tP~ 164 (387)
T 2dsn_A 154 VLSVTTIATPH 164 (387)
T ss_dssp EEEEEEESCCT
T ss_pred eeEEEEECCCC
Confidence 88888887643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-05 Score=75.99 Aligned_cols=127 Identities=13% Similarity=0.004 Sum_probs=67.8
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-cee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~ 137 (550)
.|+++|+++++.. .+... .......++|+|||+.++..... ...|+++++++++.......... .-.
T Consensus 22 ~v~~~d~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~~~~v~~~~---~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 22 NLHVVDVASDTVYKSCVMP--------DKFGPGTAMMAPDNRTAYVLNNH---YGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp EEEEEETTTTEEEEEEECS--------SCCSSCEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred eEEEEECCCCcEEEEEecC--------CCCCCceeEECCCCCEEEEEeCC---CCcEEEEeCCCCcEEEEEEcccccccc
Confidence 5789999998764 33332 11123467999999977665432 23599999999886544332110 000
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccC----------CccEEEEEeCCCceeec-ccc--cCeEEEEEEeEeecCCEEE
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKT----------GFRHLYLHDINGTCLGP-ITE--GDWMVEQIVGVNEASGQVY 203 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~----------g~~~l~~~~~~~~~~~~-lT~--~~~~~~~~~~~s~dg~~l~ 203 (550)
... .....+++++ .++++..+ ....|+++++++++... +.. ....+... .|++||+ +|
T Consensus 91 ~~~------~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~-l~ 162 (349)
T 1jmx_B 91 GRS------MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM-RAADDGS-LY 162 (349)
T ss_dssp EEC------SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE-EECTTSC-EE
T ss_pred ccc------ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccce-eECCCCc-EE
Confidence 000 0011245554 55544321 12589999987644222 211 11112222 3899998 77
Q ss_pred EE
Q 008873 204 FT 205 (550)
Q Consensus 204 f~ 205 (550)
+.
T Consensus 163 ~~ 164 (349)
T 1jmx_B 163 VA 164 (349)
T ss_dssp EE
T ss_pred Ec
Confidence 64
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00054 Score=70.47 Aligned_cols=184 Identities=10% Similarity=0.036 Sum_probs=105.4
Q ss_pred EEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEEC--CCCceEEEEEeecCce
Q 008873 60 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI--KTGQRKVILVEELDSW 136 (550)
Q Consensus 60 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~--~~g~~~~l~~~~~~~~ 136 (550)
.|.++|.++++... +..+ .. ...+++||||++++... +. ..|.++|+ +++++..-.. ...+
T Consensus 160 ~V~v~D~~t~~~~~~i~~g---------~~-~~~v~~spdg~~l~v~~-~d---~~V~v~D~~~~t~~~~~~i~--~g~~ 223 (543)
T 1nir_A 160 QIALVDGDSKKIVKVIDTG---------YA-VHISRMSASGRYLLVIG-RD---ARIDMIDLWAKEPTKVAEIK--IGIE 223 (543)
T ss_dssp EEEEEETTTCCEEEEEECS---------TT-EEEEEECTTSCEEEEEE-TT---SEEEEEETTSSSCEEEEEEE--CCSE
T ss_pred eEEEEECCCceEEEEEecC---------cc-cceEEECCCCCEEEEEC-CC---CeEEEEECcCCCCcEEEEEe--cCCC
Confidence 46788999887643 3221 11 45678999999887664 33 35888899 7776532222 1111
Q ss_pred eeccCccccCCCCCccCC----Cc-EEEEEccCCccEEEEEeCCCceee-cccc-c----------CeEEEEEEeEeecC
Q 008873 137 VNLHDCFTPLDKGVTKYS----GG-FIWASEKTGFRHLYLHDINGTCLG-PITE-G----------DWMVEQIVGVNEAS 199 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~----~~-~~~~s~~~g~~~l~~~~~~~~~~~-~lT~-~----------~~~~~~~~~~s~dg 199 (550)
. . .+ .+++ |+ ++++++.. -..|.++|..+.+.. .+.. + .-.+..+ .+++++
T Consensus 224 p-~--~v-------a~sp~~~~dg~~l~v~~~~-~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i-~~s~~~ 291 (543)
T 1nir_A 224 A-R--SV-------ESSKFKGYEDRYTIAGAYW-PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAI-IASHEH 291 (543)
T ss_dssp E-E--EE-------EECCSTTCTTTEEEEEEEE-SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEE-EECSSS
T ss_pred c-c--eE-------EeCCCcCCCCCEEEEEEcc-CCeEEEEeccccccceeecccCcccCccccccCCceEEE-EECCCC
Confidence 1 0 01 1233 44 66665431 135677787665432 2321 1 1023334 388999
Q ss_pred CEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEe
Q 008873 200 GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 279 (550)
Q Consensus 200 ~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~ 279 (550)
+.++++....+ .|+.+++. ++. . .....+..+...+.+.|+|||++++...... ..+.++|+.+++....
T Consensus 292 ~~~~vs~~~~g----~i~vvd~~-~~~-~-l~~~~i~~~~~~~~~~~spdg~~l~va~~~~---~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 292 PEFIVNVKETG----KVLLVNYK-DID-N-LTVTSIGAAPFLHDGGWDSSHRYFMTAANNS---NKVAVIDSKDRRLSAL 361 (543)
T ss_dssp SEEEEEETTTT----EEEEEECT-TSS-S-CEEEEEECCSSCCCEEECTTSCEEEEEEGGG---TEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCC----eEEEEEec-CCC-c-ceeEEeccCcCccCceECCCCCEEEEEecCC---CeEEEEECCCCeEEEe
Confidence 88887765543 67788873 221 0 0112333334456678999999876554332 3788899998876555
Q ss_pred cc
Q 008873 280 LY 281 (550)
Q Consensus 280 l~ 281 (550)
+.
T Consensus 362 i~ 363 (543)
T 1nir_A 362 VD 363 (543)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00018 Score=69.36 Aligned_cols=200 Identities=10% Similarity=0.042 Sum_probs=101.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++||-...|. .+.+||+.+++...+..- .
T Consensus 65 ~~~~~sp~g~~l~s~s~D~------------------------------------~v~iw~~~~~~~~~~~~~------~ 102 (345)
T 3fm0_A 65 RKVAWSPCGNYLASASFDA------------------------------------TTCIWKKNQDDFECVTTL------E 102 (345)
T ss_dssp EEEEECTTSSEEEEEETTS------------------------------------CEEEEEECCC-EEEEEEE------C
T ss_pred EEEEECCCCCEEEEEECCC------------------------------------cEEEEEccCCCeEEEEEc------c
Confidence 5678899998887654431 245677776654332211 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeec-CceeeccCccccCCCCCccCCCc-EEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEEL-DSWVNLHDCFTPLDKGVTKYSGG-FIWAS 161 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 161 (550)
.-...+..++|+|||++++....... |.+.++.+++. ..+..... ...+.. . .|++++ +++..
T Consensus 103 ~h~~~v~~v~~sp~~~~l~s~s~D~~----v~iwd~~~~~~~~~~~~~~~h~~~v~~---~-------~~~p~~~~l~s~ 168 (345)
T 3fm0_A 103 GHENEVKSVAWAPSGNLLATCSRDKS----VWVWEVDEEDEYECVSVLNSHTQDVKH---V-------VWHPSQELLASA 168 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSC----EEEEEECTTSCEEEEEEECCCCSCEEE---E-------EECSSSSCEEEE
T ss_pred CCCCCceEEEEeCCCCEEEEEECCCe----EEEEECCCCCCeEEEEEecCcCCCeEE---E-------EECCCCCEEEEE
Confidence 23456788999999998887654432 55555555543 22222111 111100 1 234444 45444
Q ss_pred ccCCccEEEEEeCCCcee---ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC-------CC
Q 008873 162 EKTGFRHLYLHDINGTCL---GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL-------EA 231 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~~~---~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~-------~~ 231 (550)
..+|.-.||-. .+++. ..+....-.+.... |+|+|+.|+..+.+ + ...||.... .+.... ..
T Consensus 169 s~d~~i~~w~~--~~~~~~~~~~~~~h~~~v~~l~-~sp~g~~l~s~s~D-~--~v~iW~~~~--~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 169 SYDDTVKLYRE--EEDDWVCCATLEGHESTVWSLA-FDPSGQRLASCSDD-R--TVRIWRQYL--PGNEQGVACSGSDPS 240 (345)
T ss_dssp ETTSCEEEEEE--ETTEEEEEEEECCCSSCEEEEE-ECTTSSEEEEEETT-S--CEEEEEEEC--TTCTTCCCCC---CE
T ss_pred eCCCcEEEEEe--cCCCEEEEEEecCCCCceEEEE-ECCCCCEEEEEeCC-C--eEEEecccc--CCCCccceeeccCCc
Confidence 44554445543 33322 23333333455554 99999877655543 3 267776654 221100 00
Q ss_pred Ce---eeC--CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 232 PV---KLT--NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 232 ~~---~lt--~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.+ .+. .......+.|++++..|+....+ ..+.+.+..
T Consensus 241 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~i~vw~~~ 282 (345)
T 3fm0_A 241 WKCICTLSGFHSRTIYDIAWCQLTGALATACGD----DAIRVFQED 282 (345)
T ss_dssp EEEEEEECSSCSSCEEEEEECTTTCCEEEEETT----SCEEEEEEC
T ss_pred cceeEEecCCCCCcEEEEEEecCCCEEEEEeCC----CeEEEEEeC
Confidence 01 111 11235667899998877654433 234454543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00026 Score=70.28 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=103.2
Q ss_pred EEEEEECCCCceEEE-EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|++||+++|+..++ .+ ......+..++|||||++++...... .|.+.++++++..............
T Consensus 126 tV~lWd~~tg~~~~~~~~-------~~~~~~V~sv~fspdg~~lasgs~Dg----~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQM-------EQPGEYISSVAWIKEGNYLAVGTSSA----EVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp EEEEEETTTCCEEEEEEC-------CSTTCCEEEEEECTTSSEEEEEETTS----CEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEEEECCCCCEEEEEEe-------cCCCCcEEEEEECCCCCEEEEEECCC----eEEEEEcCCCcEEEEEeCCCCceEE
Confidence 478999999987654 33 23345789999999999888765443 2677788888754322211111000
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCc--eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGT--CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~--~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
+ .+++. ++.....++ .+++.+.... ....+......+... .++++|+.++..+.+.. ..+
T Consensus 195 ----~-------s~~~~-~l~sgs~d~--~i~~~d~~~~~~~~~~~~~h~~~~~~~-~~~~~g~~l~s~~~D~~---v~i 256 (420)
T 4gga_A 195 ----L-------SWNSY-ILSSGSRSG--HIHHHDVRVAEHHVATLSGHSQEVCGL-RWAPDGRHLASGGNDNL---VNV 256 (420)
T ss_dssp ----E-------EEETT-EEEEEETTS--EEEEEETTSSSCEEEEEECCSSCEEEE-EECTTSSEEEEEETTSC---EEE
T ss_pred ----E-------eeCCC-EEEEEeCCC--ceeEeeecccceeeEEecccccceeee-eecCCCCeeeeeecccc---ceE
Confidence 0 12222 444433334 4455554332 233333333334433 48999987776655432 444
Q ss_pred EEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
+ +.. .+............. .......|+|++..++.+.+... ...|.+.++.+++....+.
T Consensus 257 ~--~~~-~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~-D~~I~iwd~~t~~~~~~~~ 318 (420)
T 4gga_A 257 W--PSA-PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-DRHIRIWNVCSGACLSAVD 318 (420)
T ss_dssp E--ESS-CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT-TCEEEEEETTTTEEEEEEE
T ss_pred E--eec-cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC-CCEEEEEeCCccccceeec
Confidence 4 442 221111112222222 23566789998877776655432 2478888988887554443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.1e-05 Score=75.78 Aligned_cols=212 Identities=12% Similarity=0.063 Sum_probs=112.3
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC---CceEEEEcccCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG---GPVSWMDLQCGG 80 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~---~~~~~l~~~~~~ 80 (550)
..++.|||||++|+....+ + .|.+||+.+ +......+
T Consensus 70 v~~~~~s~~~~~l~~~~~d-g-----------------------------------~v~vw~~~~~~~~~~~~~~~---- 109 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGALDN-G-----------------------------------SLELYSTNEANNAINSMARF---- 109 (416)
T ss_dssp EEEEEECSSSSCEEEEESS-S-----------------------------------CEEEECCSSTTSCCCEEEEC----
T ss_pred eEEEEECCCCCeEEEEccC-C-----------------------------------eEEEeecccccccccchhhc----
Confidence 3577889999888775433 1 256777776 22111222
Q ss_pred CCCCCCCceeEEEEECCC-CeEEEEEEecCCCceEEEEEECCCCc------eEEEEEeecCceeeccCccccCCCCCccC
Q 008873 81 TDQNYDEEYLARVNWMHG-NILTAQVLNRSQTKLKVLKFDIKTGQ------RKVILVEELDSWVNLHDCFTPLDKGVTKY 153 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspD-g~~i~~~~~r~~~~~~l~~~~~~~g~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (550)
......+..++|+|| +++++...... .|.+.++.+++ ......... ........+ .|+
T Consensus 110 ---~~h~~~v~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~----~~~ 174 (416)
T 2pm9_A 110 ---SNHSSSVKTVKFNAKQDNVLASGGNNG----EIFIWDMNKCTESPSNYTPLTPGQSM----SSVDEVISL----AWN 174 (416)
T ss_dssp ---CCSSSCCCEEEECSSSTTBEEEECSSS----CEEBCBTTTTSSCTTTCCCBCCCCSC----CSSCCCCEE----EEC
T ss_pred ---cCCccceEEEEEcCCCCCEEEEEcCCC----eEEEEECCCCcccccccccccccccc----CCCCCeeEE----EeC
Confidence 223446778999999 66666654332 37777888775 211110000 000000000 234
Q ss_pred CC--cEEEEEccCCccEEEEEeCCCceee-ccccc------CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC
Q 008873 154 SG--GFIWASEKTGFRHLYLHDINGTCLG-PITEG------DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD 224 (550)
Q Consensus 154 ~~--~~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~------~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~ 224 (550)
++ .+++....+| .|.++++.+++.. .+... ...+... .|+|+++.+++++..++. ...|...++. .
T Consensus 175 ~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~d~~-~~~i~~~d~~-~ 249 (416)
T 2pm9_A 175 QSLAHVFASAGSSN--FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV-EWHPKNSTRVATATGSDN-DPSILIWDLR-N 249 (416)
T ss_dssp SSCTTEEEEESSSS--CEEEEETTTTEEEEEECCCCCSSCCCCCEEEE-EECSSCTTEEEEEECCSS-SCCCCEEETT-S
T ss_pred CCCCcEEEEEcCCC--CEEEEECCCCCcceEEeccccccccCCceEEE-EECCCCCCEEEEEECCCC-CceEEEEeCC-C
Confidence 44 3555544444 4777777665433 33322 3345555 499998655555554431 1133444662 2
Q ss_pred CCCCCCCCeeeC--CCCceEEEEECC-CCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 225 WNHTLEAPVKLT--NGKGKHVAVLDH-NMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 225 g~~~~~~~~~lt--~~~~~~~~~~s~-dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
+.. ....+. .......+.|+| +++.|+....+ ..+.+.++.+++.+..+..
T Consensus 250 ~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d----g~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 250 ANT---PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD----NTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp TTS---CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS----SEEEEECSSSCCEEEEEEC
T ss_pred CCC---CcEEeecCccCceeEEEeCCCCCCeEEEEeCC----CCEEEeeCCCCccceeecC
Confidence 211 222333 223467789999 77766554332 4788899888876665543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00013 Score=73.23 Aligned_cols=193 Identities=10% Similarity=0.024 Sum_probs=106.8
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECC--CCceEE-EEcccCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAA--GGPVSW-MDLQCGG 80 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~--~~~~~~-l~~~~~~ 80 (550)
-.++.|||||++|+++...++ .|.+||+. +++... +...
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg-----------------------------------~v~iwd~~~~~~~~~~~~~~~--- 146 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDK-----------------------------------SLLVFDVDKTSKNVLKLRKRF--- 146 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGT-----------------------------------EEEEEEECSSSSSCEEEEEEE---
T ss_pred eEEEEEcCCCCEEEEEECCCC-----------------------------------eEEEEECcCCCCceeeeeecc---
Confidence 467889999999876643322 35677777 665443 3210
Q ss_pred CCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE-----EEEEeecCceeeccCccccCCCCCccCCC
Q 008873 81 TDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-----VILVEELDSWVNLHDCFTPLDKGVTKYSG 155 (550)
Q Consensus 81 ~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (550)
.....+..++|+|||+.|+..... ..|+.+++.+++.. .+...... +.. + .|+++
T Consensus 147 ----~~~~~v~~~~~sp~~~~l~~~~~~----g~v~~~~~~~~~~~~~~~~~~~~h~~~--v~~---~-------~~sp~ 206 (450)
T 2vdu_B 147 ----CFSKRPNAISIAEDDTTVIIADKF----GDVYSIDINSIPEEKFTQEPILGHVSM--LTD---V-------HLIKD 206 (450)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETT----SEEEEEETTSCCCSSCCCCCSEECSSC--EEE---E-------EEEEC
T ss_pred ----cCCCCceEEEEcCCCCEEEEEeCC----CcEEEEecCCcccccccceeeecccCc--eEE---E-------EEcCC
Confidence 113457789999999988777532 24888998877643 22221111 100 1 23444
Q ss_pred ---c-EEEEEccCCccEEEEEeCCCce-eec-ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC
Q 008873 156 ---G-FIWASEKTGFRHLYLHDINGTC-LGP-ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL 229 (550)
Q Consensus 156 ---~-~~~~s~~~g~~~l~~~~~~~~~-~~~-lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~ 229 (550)
+ +++....++ .|+++++.+++ ... +......+..+. |+ +|+.|+..+. ++ .|...++. .+.
T Consensus 207 ~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~h~~~v~~~~-~s-d~~~l~s~~~-d~----~v~vwd~~-~~~--- 273 (450)
T 2vdu_B 207 SDGHQFIITSDRDE--HIKISHYPQCFIVDKWLFGHKHFVSSIC-CG-KDYLLLSAGG-DD----KIFAWDWK-TGK--- 273 (450)
T ss_dssp TTSCEEEEEEETTS--CEEEEEESCTTCEEEECCCCSSCEEEEE-EC-STTEEEEEES-SS----EEEEEETT-TCC---
T ss_pred CCCCcEEEEEcCCC--cEEEEECCCCceeeeeecCCCCceEEEE-EC-CCCEEEEEeC-CC----eEEEEECC-CCc---
Confidence 4 666655555 45566655443 333 333333455554 88 8887775553 22 34444552 221
Q ss_pred CCCeeeC--------------------------CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 230 EAPVKLT--------------------------NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 230 ~~~~~lt--------------------------~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
....+. .......+.++|++++++..... ...+.++++
T Consensus 274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~---d~~i~iw~~ 337 (450)
T 2vdu_B 274 -NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA---TKCIIILEM 337 (450)
T ss_dssp -EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT---CSEEEEEEE
T ss_pred -EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC---CCeEEEEEe
Confidence 111111 01125566899999987666522 247888877
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0002 Score=69.76 Aligned_cols=187 Identities=8% Similarity=0.028 Sum_probs=93.6
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC-CCceEEEEEeecCcee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQRKVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~-~g~~~~l~~~~~~~~~ 137 (550)
..++.+|.++++...+.... .........++|||||+.++..... .|.+++++ +|+...+......+.
T Consensus 16 i~~~~~d~~~g~l~~~~~~~-----~~~~~~~~~~a~spdg~~l~~~~~~-----~v~~~~~~~~g~~~~~~~~~~~g~- 84 (365)
T 1jof_A 16 IFTVQFDDEKLTCKLIKRTE-----IPQDEPISWMTFDHERKNIYGAAMK-----KWSSFAVKSPTEIVHEASHPIGGH- 84 (365)
T ss_dssp EEEEEEETTTTEEEEEEEEE-----CCTTCCCSEEEECTTSSEEEEEEBT-----EEEEEEEEETTEEEEEEEEECCSS-
T ss_pred EEEEEEECCCCCEEEeeEEc-----cCCCCCCcEEEECCCCCEEEEEccc-----eEEEEEECCCCCEEEeeEeecCCC-
Confidence 34455667788776553210 0111234457899999977655432 35555554 677655443321110
Q ss_pred eccCccccCCCCCccCCCc---EEEEEc-------------cCCccEEEEEeCCCceeecccc----cCeEEEEEEeEee
Q 008873 138 NLHDCFTPLDKGVTKYSGG---FIWASE-------------KTGFRHLYLHDINGTCLGPITE----GDWMVEQIVGVNE 197 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~---~~~~s~-------------~~g~~~l~~~~~~~~~~~~lT~----~~~~~~~~~~~s~ 197 (550)
.. .. .+++++ +++.++ .+|.-.+|.++.++...+.+.. ..-.+..+ .|+|
T Consensus 85 ~~--~~-------~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~sp 154 (365)
T 1jof_A 85 PR--AN-------DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGM-VFDP 154 (365)
T ss_dssp GG--GG-------CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEE-EECT
T ss_pred Cc--cE-------EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEE-EECC
Confidence 00 01 245554 344444 3444455555544443333331 12223444 4999
Q ss_pred cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC--C-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEE--cC
Q 008873 198 ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT--N-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCS--LQ 272 (550)
Q Consensus 198 dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt--~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~--~~ 272 (550)
||+.||+..... ..|+.+++..+|.. .....+. . +.+...+.|||||+++++..... ..+.+++ ..
T Consensus 155 dG~~l~~~~~~~----~~v~~~~~~~~g~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~---~~v~v~~~~~~ 225 (365)
T 1jof_A 155 TETYLYSADLTA----NKLWTHRKLASGEV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG---NRICEYVIDPA 225 (365)
T ss_dssp TSSEEEEEETTT----TEEEEEEECTTSCE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT---TEEEEEEECTT
T ss_pred CCCEEEEEcCCC----CEEEEEEECCCCCE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC---CeEEEEEEeCC
Confidence 999887664332 24555666212210 0111222 1 34466778999999876654322 2555544 43
Q ss_pred CCc
Q 008873 273 DGS 275 (550)
Q Consensus 273 ~g~ 275 (550)
+|+
T Consensus 226 ~g~ 228 (365)
T 1jof_A 226 THM 228 (365)
T ss_dssp TCC
T ss_pred CCc
Confidence 565
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00051 Score=65.97 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=110.1
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE-EEEcccCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQ 83 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~ 83 (550)
.++.|||||++|+-...| ..|.+||+.+++.. .+.
T Consensus 59 ~~~~~s~d~~~l~s~s~D------------------------------------g~v~iWd~~~~~~~~~~~-------- 94 (340)
T 1got_B 59 YAMHWGTDSRLLLSASQD------------------------------------GKLIIWDSYTTNKVHAIP-------- 94 (340)
T ss_dssp EEEEECTTSSEEEEEETT------------------------------------TEEEEEETTTCCEEEEEE--------
T ss_pred EEEEECCCCCEEEEEeCC------------------------------------CcEEEEECCCCCcceEee--------
Confidence 567899999988654332 13678899887653 232
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc--eEEEEEeec-CceeeccCccccCCCCCccCCCcEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ--RKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGGFIWA 160 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~--~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (550)
.....+..++|+|||+.++...... .+.+.++.+++ .+....... ...+.. . .+.+++.++.
T Consensus 95 -~~~~~v~~~~~s~~~~~l~s~~~d~----~v~iw~~~~~~~~~~~~~~~~~h~~~v~~---~-------~~~~~~~l~s 159 (340)
T 1got_B 95 -LRSSWVMTCAYAPSGNYVACGGLDN----ICSIYNLKTREGNVRVSRELAGHTGYLSC---C-------RFLDDNQIVT 159 (340)
T ss_dssp -CSSSCEEEEEECTTSSEEEEEETTC----EEEEEETTTCSBSCEEEEEEECCSSCEEE---E-------EEEETTEEEE
T ss_pred -cCCccEEEEEECCCCCEEEEEeCCC----eEEEEECccCCCcceeEEEecCCCccEEE---E-------EECCCCcEEE
Confidence 2234577889999999887765332 35556666553 222222111 111100 0 1223333434
Q ss_pred EccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-
Q 008873 161 SEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG- 238 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~- 238 (550)
+..+| .|.++|+.+++. ..+......+... .|+|+++.|+ ++..++. ..+| ++. .+. ....+...
T Consensus 160 ~s~d~--~i~~wd~~~~~~~~~~~~h~~~v~~~-~~~~~~~~l~-sg~~d~~--v~~w--d~~-~~~----~~~~~~~h~ 226 (340)
T 1got_B 160 SSGDT--TCALWDIETGQQTTTFTGHTGDVMSL-SLAPDTRLFV-SGACDAS--AKLW--DVR-EGM----CRQTFTGHE 226 (340)
T ss_dssp EETTS--CEEEEETTTTEEEEEECCCSSCEEEE-EECTTSSEEE-EEETTSC--EEEE--ETT-TCS----EEEEECCCS
T ss_pred EECCC--cEEEEECCCCcEEEEEcCCCCceEEE-EECCCCCEEE-EEeCCCc--EEEE--ECC-CCe----eEEEEcCCc
Confidence 33334 466777766543 3444344445555 4899987555 4444432 4555 652 221 22333332
Q ss_pred CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.....+.|+|+++.|+....+ ..+.+.|+.+++....+
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d----~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDD----ATCRLFDLRADQELMTY 264 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEcCC----CcEEEEECCCCcEEEEE
Confidence 236777999999987654333 36888888777654433
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.8e-06 Score=80.34 Aligned_cols=182 Identities=12% Similarity=0.096 Sum_probs=94.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC---C-ce-EEEEEeecC
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT---G-QR-KVILVEELD 134 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~---g-~~-~~l~~~~~~ 134 (550)
.|.+||+++++..+.... ......+..++|+|||++|+...... .|.+.++.+ + +. ..+......
T Consensus 46 ~v~iw~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg----~v~vw~~~~~~~~~~~~~~~~~h~~~ 115 (416)
T 2pm9_A 46 SLELWSLLAADSEKPIAS------LQVDSKFNDLDWSHNNKIIAGALDNG----SLELYSTNEANNAINSMARFSNHSSS 115 (416)
T ss_dssp CCEEEESSSGGGCSCSCC------CCCSSCEEEEEECSSSSCEEEEESSS----CEEEECCSSTTSCCCEEEECCCSSSC
T ss_pred eEEEEEccCCCCCcEEEE------EecCCceEEEEECCCCCeEEEEccCC----eEEEeecccccccccchhhccCCccc
Confidence 468889998753211000 12245678899999999887765432 255666665 2 22 222111111
Q ss_pred ceeeccCccccCCCCCccCCC--cEEEEEccCCccEEEEEeCCCce-------eecc---cccCeEEEEEEeEeecCCEE
Q 008873 135 SWVNLHDCFTPLDKGVTKYSG--GFIWASEKTGFRHLYLHDINGTC-------LGPI---TEGDWMVEQIVGVNEASGQV 202 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~g~~~l~~~~~~~~~-------~~~l---T~~~~~~~~~~~~s~dg~~l 202 (550)
.. .. .++++ .+++....+| .|.++++.+++ ...+ ......+... .|++++..+
T Consensus 116 v~-----~~-------~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~ 180 (416)
T 2pm9_A 116 VK-----TV-------KFNAKQDNVLASGGNNG--EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL-AWNQSLAHV 180 (416)
T ss_dssp CC-----EE-------EECSSSTTBEEEECSSS--CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE-EECSSCTTE
T ss_pred eE-----EE-------EEcCCCCCEEEEEcCCC--eEEEEECCCCccccccccccccccccCCCCCeeEE-EeCCCCCcE
Confidence 00 01 23333 3555554444 46667766543 1112 1222234444 489996556
Q ss_pred EEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-------CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 203 YFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-------GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 203 ~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-------~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
++++..++ .|...++. .+. ....+.. ......+.|+|++..++++.+.....+.+.++++.+++
T Consensus 181 l~~~~~dg----~v~iwd~~-~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 181 FASAGSSN----FASIWDLK-AKK----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EEEESSSS----CEEEEETT-TTE----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EEEEcCCC----CEEEEECC-CCC----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 66666554 24444652 221 2223332 23467779999986555555544333478888887653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00015 Score=71.61 Aligned_cols=183 Identities=10% Similarity=0.009 Sum_probs=97.2
Q ss_pred EEEEEECCCCc--------eEEEEcccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEE
Q 008873 60 RLGVVSAAGGP--------VSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILV 130 (550)
Q Consensus 60 ~l~~~d~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~ 130 (550)
.|.+||+.++. ...+ ......+..++|+|||+ +++...... .|.+.++.+++......
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~---------~~h~~~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITL---------EGHTKRVGIVAWHPTAQNVLLSAGCDN----VILVWDVGTGAAVLTLG 171 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEE---------ECCSSCEEEEEECSSBTTEEEEEETTS----CEEEEETTTTEEEEEEC
T ss_pred eEEEEEccCCCCccccCCceEEe---------cCCCCeEEEEEECcCCCCEEEEEcCCC----EEEEEECCCCCccEEEe
Confidence 46778888763 2222 22345678899999995 665554332 37788888887644331
Q ss_pred -eecCceeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceee-cc-cccC-eEEEEEEeEeecCCEEEEE
Q 008873 131 -EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLG-PI-TEGD-WMVEQIVGVNEASGQVYFT 205 (550)
Q Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~-~l-T~~~-~~~~~~~~~s~dg~~l~f~ 205 (550)
......+.. + .|++++ +++....+| .|.++|+.+++.. .+ .... ..+... .|+++++.|+..
T Consensus 172 ~~~~~~~v~~---~-------~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~g 238 (402)
T 2aq5_A 172 PDVHPDTIYS---V-------DWSRDGALICTSCRDK--RVRVIEPRKGTVVAEKDRPHEGTRPVHA-VFVSEGKILTTG 238 (402)
T ss_dssp TTTCCSCEEE---E-------EECTTSSCEEEEETTS--EEEEEETTTTEEEEEEECSSCSSSCCEE-EECSTTEEEEEE
T ss_pred cCCCCCceEE---E-------EECCCCCEEEEEecCC--cEEEEeCCCCceeeeeccCCCCCcceEE-EEcCCCcEEEEe
Confidence 111111100 1 234444 444444444 6778887665533 33 1111 112333 489998655544
Q ss_pred EcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 206 GTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 206 ~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
..... ...|...++. .+... .....+........+.|+||++.++++.+. -..+.++++.+++
T Consensus 239 ~~~~~--d~~i~iwd~~-~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~---dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 239 FSRMS--ERQVALWDTK-HLEEP-LSLQELDTSSGVLLPFFDPDTNIVYLCGKG---DSSIRYFEITSEA 301 (402)
T ss_dssp ECTTC--CEEEEEEETT-BCSSC-SEEEECCCCSSCEEEEEETTTTEEEEEETT---CSCEEEEEECSST
T ss_pred ccCCC--CceEEEEcCc-cccCC-ceEEeccCCCceeEEEEcCCCCEEEEEEcC---CCeEEEEEecCCC
Confidence 32211 2456666762 22200 011222233457778999999988766542 1367788877665
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=79.80 Aligned_cols=199 Identities=11% Similarity=-0.002 Sum_probs=110.3
Q ss_pred eEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCCC
Q 008873 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQNY 85 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 85 (550)
.+.|||||++|+....+. .+++||+.+++.... ..
T Consensus 61 ~~~~s~~g~~l~~~~~d~------------------------------------~v~i~d~~~~~~~~~---------~~ 95 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDG------------------------------------HDFLFNTIIRDGSKM---------LK 95 (420)
T ss_dssp TCEEEEEETTEEEEEETT------------------------------------EEEEEECCSEETTTT---------SC
T ss_pred ceeeeecCCeEEEEEcCC------------------------------------cEEEEEecccceeeE---------Ee
Confidence 678899999888765541 367888887643211 11
Q ss_pred CCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 86 DEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 86 ~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
.........|+|||+.++...... .|.+.++.+++...+.... ...+.. . .|++++ +++....+
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~h-~~~v~~---~-------~~~~~~~~l~s~s~d 160 (420)
T 3vl1_A 96 RADYTAVDTAKLQMRRFILGTTEG----DIKVLDSNFNLQREIDQAH-VSEITK---L-------KFFPSGEALISSSQD 160 (420)
T ss_dssp SCCEEEEEEECSSSCEEEEEETTS----CEEEECTTSCEEEEETTSS-SSCEEE---E-------EECTTSSEEEEEETT
T ss_pred cCCceEEEEEecCCCEEEEEECCC----CEEEEeCCCcceeeecccc-cCccEE---E-------EECCCCCEEEEEeCC
Confidence 224455567999999887775433 3777788887765432111 111100 1 234444 55554444
Q ss_pred CccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC----C-
Q 008873 165 GFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN----G- 238 (550)
Q Consensus 165 g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~----~- 238 (550)
| .|.++++.+++ .+.+......+.... |+|+++.|+..+.. +. ..+| ++. .+. ....+.. .
T Consensus 161 ~--~i~iwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~l~s~~~d-~~--v~iw--d~~-~~~----~~~~~~~~~~~~~ 227 (420)
T 3vl1_A 161 M--QLKIWSVKDGSNPRTLIGHRATVTDIA-IIDRGRNVLSASLD-GT--IRLW--ECG-TGT----TIHTFNRKENPHD 227 (420)
T ss_dssp S--EEEEEETTTCCCCEEEECCSSCEEEEE-EETTTTEEEEEETT-SC--EEEE--ETT-TTE----EEEEECBTTBTTC
T ss_pred C--eEEEEeCCCCcCceEEcCCCCcEEEEE-EcCCCCEEEEEcCC-Cc--EEEe--ECC-CCc----eeEEeecCCCCCC
Confidence 4 57777876543 445554444455554 99999887755443 21 4444 441 111 1111111 0
Q ss_pred --------------------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 239 --------------------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 239 --------------------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.....+.|+|+++.++....+ ..+.++++.+++....+.
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 228 GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS----GVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT----SCEEEEETTTCCEEEEEC
T ss_pred CccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC----CeEEEEECCCCceeEEcc
Confidence 112223568899877654433 368888988877555443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00031 Score=69.29 Aligned_cols=185 Identities=15% Similarity=0.150 Sum_probs=108.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|++||+++++...+.. ......+..++|+|||+.++...... .|.+.++.+++........... +.
T Consensus 114 ~v~lw~~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~-v~- 180 (401)
T 4aez_A 114 NVYVWNADSGSVSALAE-------TDESTYVASVKWSHDGSFLSVGLGNG----LVDIYDVESQTKLRTMAGHQAR-VG- 180 (401)
T ss_dssp EEEEEETTTCCEEEEEE-------CCTTCCEEEEEECTTSSEEEEEETTS----CEEEEETTTCCEEEEECCCSSC-EE-
T ss_pred eEEEeeCCCCcEeEeee-------cCCCCCEEEEEECCCCCEEEEECCCC----eEEEEECcCCeEEEEecCCCCc-eE-
Confidence 47899999998765432 12345688999999999887775443 3777888888754433211110 00
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCC--CceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDIN--GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~--~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
-+ .|+++ +++....+| .|.+++.. +.....+......+.... |+++++.|+..+.... ..+|
T Consensus 181 -----~~----~~~~~-~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~s~~~d~~---v~iw 244 (401)
T 4aez_A 181 -----CL----SWNRH-VLSSGSRSG--AIHHHDVRIANHQIGTLQGHSSEVCGLA-WRSDGLQLASGGNDNV---VQIW 244 (401)
T ss_dssp -----EE----EEETT-EEEEEETTS--EEEEEETTSSSCEEEEEECCSSCEEEEE-ECTTSSEEEEEETTSC---EEEE
T ss_pred -----EE----EECCC-EEEEEcCCC--CEEEEecccCcceeeEEcCCCCCeeEEE-EcCCCCEEEEEeCCCe---EEEc
Confidence 00 23333 454444444 56666665 233444444444555554 9999987776554422 4444
Q ss_pred EEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 218 CAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
++. .+. ....+.. ......+.|+|++..++++.++ .....+.++++.+++....+.
T Consensus 245 --d~~-~~~----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g-s~d~~i~i~d~~~~~~~~~~~ 301 (401)
T 4aez_A 245 --DAR-SSI----PKFTKTNHNAAVKAVAWCPWQSNLLATGGG-TMDKQIHFWNAATGARVNTVD 301 (401)
T ss_dssp --ETT-CSS----EEEEECCCSSCCCEEEECTTSTTEEEEECC-TTTCEEEEEETTTCCEEEEEE
T ss_pred --cCC-CCC----ccEEecCCcceEEEEEECCCCCCEEEEecC-CCCCEEEEEECCCCCEEEEEe
Confidence 662 221 2223332 2336677899999888776543 223589999998887655553
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00026 Score=68.25 Aligned_cols=182 Identities=7% Similarity=0.019 Sum_probs=99.2
Q ss_pred EEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.+||+++++... +... +..-...+..++|||||++|+...... .|.+.|+.+++........ ...+.
T Consensus 104 ~v~lWd~~~~~~~~~~~~~-----~~~H~~~V~~v~~spdg~~l~sgs~d~----~i~iwd~~~~~~~~~~~~h-~~~V~ 173 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFC-----KYEHDDIVSTVSVLSSGTQAVSGSKDI----CIKVWDLAQQVVLSSYRAH-AAQVT 173 (344)
T ss_dssp EEEEEEECTTSSCEEEEEE-----EECCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTTEEEEEECCC-SSCEE
T ss_pred EEEEEeccCCCceeEeecc-----ccCCCCCEEEEEECCCCCEEEEEeCCC----eEEEEECCCCcEEEEEcCc-CCceE
Confidence 36788998876432 2111 012244688899999999888765443 2777788888764433211 11111
Q ss_pred ccCccccCCCCCccCCC--cEEEEEccCCccEEEEEeCCCce-eecccc--cCeEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 139 LHDCFTPLDKGVTKYSG--GFIWASEKTGFRHLYLHDINGTC-LGPITE--GDWMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~~~~~s~~~g~~~l~~~~~~~~~-~~~lT~--~~~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
. . .++++ .++.....+| .|.+.|+.+++ ...+.. ....+... .|+|++..++.++..++ .
T Consensus 174 ~---~-------~~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~l~sg~~dg--~ 238 (344)
T 4gqb_B 174 C---V-------AASPHKDSVFLSCSEDN--RILLWDTRCPKPASQIGCSAPGYLPTSL-AWHPQQSEVFVFGDENG--T 238 (344)
T ss_dssp E---E-------EECSSCTTEEEEEETTS--CEEEEETTSSSCEEECC----CCCEEEE-EECSSCTTEEEEEETTS--E
T ss_pred E---E-------EecCCCCCceeeecccc--ccccccccccceeeeeecceeeccceee-eecCCCCcceEEeccCC--c
Confidence 0 1 12232 3444433344 46667776554 333322 12223334 48887776766666554 2
Q ss_pred eEEEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 214 SHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
..|| ++. .+. ....+... .....+.|+||+..++++.+.- ..+.+.|+.+++.
T Consensus 239 v~~w--d~~-~~~----~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D---~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 239 VSLV--DTK-STS----CVLSSAVHSQCVTGLVFSPHSVPFLASLSED---CSLAVLDSSLSEL 292 (344)
T ss_dssp EEEE--ESC-C------CCEEEECCSSCEEEEEECSSSSCCEEEEETT---SCEEEECTTCCEE
T ss_pred EEEE--ECC-CCc----EEEEEcCCCCCEEEEEEccCCCeEEEEEeCC---CeEEEEECCCCcE
Confidence 4444 662 222 34444432 3467779999997666555432 3678888877753
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00014 Score=76.31 Aligned_cols=183 Identities=11% Similarity=0.037 Sum_probs=94.1
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCcee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~ 137 (550)
.|.+||+++++.. ..++ ......+..++|||||+.|+...........|++.+ +|+. ..+...... +
T Consensus 82 ~v~lWd~~~~~~~~~~~~-------~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~--v 150 (611)
T 1nr0_A 82 NVRIWDTTQTTHILKTTI-------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA--M 150 (611)
T ss_dssp EEEEEESSSTTCCEEEEE-------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC--E
T ss_pred CEEEeECCCCcceeeEee-------cccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCC--c
Confidence 3677898765432 2222 122346788999999998877654332223466555 3332 111111111 1
Q ss_pred eccCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 138 NLHDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
.. . .+++++ .+.....++. |.+++...++. ..+..+.-.+.... |+|||+.|+-.+. ++. .
T Consensus 151 ~~---v-------~f~p~~~~~l~s~s~D~~--v~lwd~~~~~~~~~l~~H~~~V~~v~-fspdg~~las~s~-D~~--i 214 (611)
T 1nr0_A 151 NS---V-------DFKPSRPFRIISGSDDNT--VAIFEGPPFKFKSTFGEHTKFVHSVR-YNPDGSLFASTGG-DGT--I 214 (611)
T ss_dssp EE---E-------EECSSSSCEEEEEETTSC--EEEEETTTBEEEEEECCCSSCEEEEE-ECTTSSEEEEEET-TSC--E
T ss_pred eE---E-------EECCCCCeEEEEEeCCCe--EEEEECCCCeEeeeeccccCceEEEE-ECCCCCEEEEEEC-CCc--E
Confidence 00 1 223433 2333333443 44455544432 33444443455554 9999986664444 332 4
Q ss_pred EEEEEEeCCCCCCCCCCCeeeC--------CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLT--------NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt--------~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.|| ++. .+. ....+. .......+.|+|||++|+-...+ ..+.+.++.+++....+
T Consensus 215 ~lw--d~~-~g~----~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D----~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 215 VLY--NGV-DGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD----KTIKIWNVATLKVEKTI 277 (611)
T ss_dssp EEE--ETT-TCC----EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTTEEEEEE
T ss_pred EEE--ECC-CCc----EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC----CeEEEEeCCCCceeeee
Confidence 555 441 222 112221 22346778999999987544322 47888888877655444
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00096 Score=64.95 Aligned_cols=192 Identities=9% Similarity=-0.070 Sum_probs=94.0
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEE-EEeecCcee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI-LVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l-~~~~~~~~~ 137 (550)
.|.++|.++.+.. .+.+...+.... ...-..+.|||||++++....+. ...|..+| ++++.... ... +...
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~--g~~p~~~~~spDG~~l~v~n~~~--~~~v~viD-~t~~~~~~~i~~--~~~~ 170 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDV--GPYSWMNANTPNNADLLFFQFAA--GPAVGLVV-QGGSSDDQLLSS--PTCY 170 (373)
T ss_pred eEEEEECCCCcEEEEEECCCcccccc--CCCccceEECCCCCEEEEEecCC--CCeEEEEE-CCCCEEeEEcCC--CceE
Confidence 4678899887654 343320000000 01123578999999887774332 23589999 99876432 221 1111
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceee-ccc-----ccCeEEEEEEeEeecCCEEEEEEcCCCC
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PIT-----EGDWMVEQIVGVNEASGQVYFTGTLDGP 211 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~-~lT-----~~~~~~~~~~~~s~dg~~l~f~~~~~~~ 211 (550)
. +.+ +.+..++ ....+| .+..++. +++.. .+. .+...+.....++++++.++|.+..
T Consensus 171 ~----~~~------~~~~~~~-~~~~dg--~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--- 233 (373)
T 2mad_H 171 H----IHP------GAPSTFY-LLCAQG--GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS--- 233 (373)
T ss_pred E----EEe------CCCceEE-EEcCCC--CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCC---
Confidence 0 111 1112122 222223 3445555 33222 111 1111111112356777788887632
Q ss_pred ceeEEEEEEeCCCCCCCCCCCeeeC-----------CCCceEEEEECCCCCEEEEeecCCC------CCCEEEEEEcCCC
Q 008873 212 LESHLYCAKLYPDWNHTLEAPVKLT-----------NGKGKHVAVLDHNMRNFVDFHDSLD------SPPRILLCSLQDG 274 (550)
Q Consensus 212 ~~~~l~~v~~~~~g~~~~~~~~~lt-----------~~~~~~~~~~s~dg~~l~~~~s~~~------~p~~l~~~~~~~g 274 (550)
..++.+++. +... .....+. ...+...+.+++|++.++....... ...+++++|++++
T Consensus 234 --~~v~vid~~--~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~ 308 (373)
T 2mad_H 234 --GKILQADIS--AAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred --ceEEEEecc--CCcc-eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence 368888872 2100 0001110 0122344578999988766544321 1347999999888
Q ss_pred ceeEec
Q 008873 275 SLVLPL 280 (550)
Q Consensus 275 ~~~~~l 280 (550)
+.++.+
T Consensus 309 ~vv~~i 314 (373)
T 2mad_H 309 QTSSQI 314 (373)
T ss_pred EEEEEE
Confidence 876666
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=98.18 E-value=5.6e-06 Score=82.14 Aligned_cols=138 Identities=13% Similarity=0.041 Sum_probs=81.1
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc--------hhHhHHHHhCCcEEEEEC-C
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV--------DMRAQYLRSKGILVWKLD-N 370 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~--------~~~~~~l~~~G~~vv~~d-~ 370 (550)
++..++..+..|++..... +...|+|+++||||+...+...+ ++.. ......+ .+-..++.+| +
T Consensus 26 v~v~~~~~lfy~f~~s~~~---~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw-~~~~~~lfiDqP 101 (452)
T 1ivy_A 26 LKSSGSKHLHYWFVESQKD---PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSW-NLIANVLYLESP 101 (452)
T ss_dssp EECSTTEEEEEEEECCSSC---GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCG-GGSSEEEEECCS
T ss_pred EeeCCCCeEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCcc-cccccEEEEecC
Confidence 3444567888887765432 24579999999999976432111 1100 0000001 2347899999 4
Q ss_pred CCCCCCchhhHHHHhhccCC---CchHHHHH-HHHHHHHcCCCCCCceEEEEechhHHHHHHHHh----hCCCeeEEEEE
Q 008873 371 RGTARRGLKFEASIKHNCGR---IDAEDQLT-GAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA----RFPDVFQCAVS 442 (550)
Q Consensus 371 rG~g~~~~~~~~~~~~~~~~---~~~~D~~~-~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~----~~~~~~~~~v~ 442 (550)
+|+|.|-..- ..+.. ...+|... ..+++...+.....++.|+|+||||..+..++. ..+-.++++++
T Consensus 102 ~GtGfS~~~~-----~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~i 176 (452)
T 1ivy_A 102 AGVGFSYSDD-----KFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAV 176 (452)
T ss_dssp TTSTTCEESS-----CCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEE
T ss_pred CCCCcCCcCC-----CCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEEe
Confidence 7888663210 00100 11333333 344555545556688999999999995554443 23456899999
Q ss_pred cCCcCCc
Q 008873 443 GAPVTSW 449 (550)
Q Consensus 443 ~~~~~~~ 449 (550)
++|++|.
T Consensus 177 gn~~~d~ 183 (452)
T 1ivy_A 177 GNGLSSY 183 (452)
T ss_dssp ESCCSBH
T ss_pred cCCccCh
Confidence 9998763
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=77.60 Aligned_cols=214 Identities=11% Similarity=0.076 Sum_probs=106.0
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++||=...+.... + ...+++++..++....-... ...
T Consensus 46 ~~v~fSpDG~~las~s~d~~~~--w----------------------------d~~v~~~~~~~~~~~~~~~~----~~~ 91 (357)
T 4g56_B 46 GAVRYRRDGALLLAASSLSSRT--W----------------------------GGSIWVFKDPEGAPNESLCT----AGV 91 (357)
T ss_dssp EEEEECSSSCEEEEEECSSSSS--C----------------------------CEEEEEESSCC---CGGGCS----EEE
T ss_pred EEEEECCCCCEEEEEcCCCCcc--c----------------------------cCeEEEEECCCCCcceeEec----ccC
Confidence 6789999999998765432211 0 13567777776543210000 001
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE---eecCceeeccCccccCCCCCccCCCc-EEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV---EELDSWVNLHDCFTPLDKGVTKYSGG-FIWA 160 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (550)
.....+..++|+||+++++.. .. +. |.+-++.+++...+.. ......+.. . .+++++ +++.
T Consensus 92 ~~~~~V~~~~~s~d~~~l~~s-~d--g~--v~lWd~~~~~~~~~~~~~~~~h~~~V~~---v-------~~spdg~~l~s 156 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKGILVAS-DS--GA--VELWEILEKESLLVNKFAKYEHDDIVKT---L-------SVFSDGTQAVS 156 (357)
T ss_dssp ECSSCEEEEEEETTTEEEEEE-TT--SC--EEEC--------CCCCEEECCCSSCEEE---E-------EECSSSSEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEE-CC--CE--EEEeeccccceeEEEeeccCCCCCCEEE---E-------EECCCCCEEEE
Confidence 123357889999999866543 22 12 5555666665432111 111111100 1 234444 5544
Q ss_pred EccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC--
Q 008873 161 SEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-- 237 (550)
Q Consensus 161 s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-- 237 (550)
...+| .|.++|..+++. ..+......+.... |+++++.+++++..++. ..|| ++. .+. ....+..
T Consensus 157 gs~dg--~v~iwd~~~~~~~~~~~~h~~~v~~v~-~s~~~~~~~~s~~~dg~--v~~w--d~~-~~~----~~~~~~~~~ 224 (357)
T 4g56_B 157 GGKDF--SVKVWDLSQKAVLKSYNAHSSEVNCVA-ACPGKDTIFLSCGEDGR--ILLW--DTR-KPK----PATRIDFCA 224 (357)
T ss_dssp EETTS--CEEEEETTTTEEEEEECCCSSCEEEEE-ECTTCSSCEEEEETTSC--EEEC--CTT-SSS----CBCBCCCTT
T ss_pred EeCCC--eEEEEECCCCcEEEEEcCCCCCEEEEE-EccCCCceeeeeccCCc--eEEE--ECC-CCc----eeeeeeecc
Confidence 44444 466667766553 34443344455544 88898777766666542 4454 552 221 1122221
Q ss_pred -CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 238 -GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 238 -~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
......+.|+|++..++.+.+.. ..+.++++.+++..+.+..
T Consensus 225 ~~~~v~~v~~sp~~~~~la~g~~d---~~i~~wd~~~~~~~~~~~~ 267 (357)
T 4g56_B 225 SDTIPTSVTWHPEKDDTFACGDET---GNVSLVNIKNPDSAQTSAV 267 (357)
T ss_dssp CCSCEEEEEECTTSTTEEEEEESS---SCEEEEESSCGGGCEEECC
T ss_pred ccccccchhhhhcccceEEEeecc---cceeEEECCCCcEeEEEec
Confidence 12356678999876555554332 3688889888776555543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0004 Score=66.71 Aligned_cols=181 Identities=12% Similarity=0.064 Sum_probs=96.6
Q ss_pred EEEEEECCCCce--EEE-EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCce
Q 008873 60 RLGVVSAAGGPV--SWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 60 ~l~~~d~~~~~~--~~l-~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
.+.+||+.+++. +.. .+ ......+....|++|+++ +...... .|.+.|+.+++........ ...
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~l-~s~s~d~----~i~~wd~~~~~~~~~~~~h-~~~ 186 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSREL-------AGHTGYLSCCRFLDDNQI-VTSSGDT----TCALWDIETGQQTTTFTGH-TGD 186 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEE-------ECCSSCEEEEEEEETTEE-EEEETTS----CEEEEETTTTEEEEEECCC-SSC
T ss_pred eEEEEECccCCCcceeEEEe-------cCCCccEEEEEECCCCcE-EEEECCC----cEEEEECCCCcEEEEEcCC-CCc
Confidence 356778876531 111 11 122446778899999983 3333222 2777788888754332211 111
Q ss_pred eeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 137 VNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
+.. + .+++++ +++....+| .|.++|..+++ ...+......+.... |+|+|+.|+..+. ++. .
T Consensus 187 v~~---~-------~~~~~~~~l~sg~~d~--~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~-d~~--v 250 (340)
T 1got_B 187 VMS---L-------SLAPDTRLFVSGACDA--SAKLWDVREGMCRQTFTGHESDINAIC-FFPNGNAFATGSD-DAT--C 250 (340)
T ss_dssp EEE---E-------EECTTSSEEEEEETTS--CEEEEETTTCSEEEEECCCSSCEEEEE-ECTTSSEEEEEET-TSC--E
T ss_pred eEE---E-------EECCCCCEEEEEeCCC--cEEEEECCCCeeEEEEcCCcCCEEEEE-EcCCCCEEEEEcC-CCc--E
Confidence 100 1 234444 554444444 45666765543 334444444455554 9999987765544 332 4
Q ss_pred EEEEEEeCCCCCCCCCCCeeeCCC---CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLTNG---KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt~~---~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.+| ++. .+. ....+... .+...+.|+|+|+.++....+ ..+.+.++.+++....+
T Consensus 251 ~iw--d~~-~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----~~i~vwd~~~~~~~~~~ 308 (340)
T 1got_B 251 RLF--DLR-ADQ----ELMTYSHDNIICGITSVSFSKSGRLLLAGYDD----FNCNVWDALKADRAGVL 308 (340)
T ss_dssp EEE--ETT-TTE----EEEEECCTTCCSCEEEEEECTTSSEEEEEETT----SEEEEEETTTCCEEEEE
T ss_pred EEE--ECC-CCc----EEEEEccCCcccceEEEEECCCCCEEEEECCC----CeEEEEEcccCcEeeEe
Confidence 555 552 111 12222221 246778999999987655433 47888888777654444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00031 Score=69.44 Aligned_cols=180 Identities=9% Similarity=-0.028 Sum_probs=98.9
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE-EEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~ 138 (550)
.|+++|+++++...+... ...-. ++|+|||+.++....... ..|+.++.+++... .+.......
T Consensus 153 ~I~~id~~~g~~~~~~~~---------~~~~~-ia~~~~g~~l~~~d~~~~--~~I~~~d~~~~~~~~~~g~~~~~~--- 217 (409)
T 3hrp_A 153 RVRLISVDDNKVTTVHPG---------FKGGK-PAVTKDKQRVYSIGWEGT--HTVYVYMKASGWAPTRIGQLGSTF--- 217 (409)
T ss_dssp EEEEEETTTTEEEEEEET---------CCBCB-CEECTTSSEEEEEBSSTT--CEEEEEEGGGTTCEEEEEECCTTS---
T ss_pred cEEEEECCCCEEEEeecc---------CCCCc-eeEecCCCcEEEEecCCC--ceEEEEEcCCCceeEEeeeccchh---
Confidence 478889988877655321 11122 799999997766543222 16999999877653 331111100
Q ss_pred ccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCceeecc----cccCeEEE---EEEeEeecCCEEEEEEcCCC
Q 008873 139 LHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPI----TEGDWMVE---QIVGVNEASGQVYFTGTLDG 210 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~~~l----T~~~~~~~---~~~~~s~dg~~l~f~~~~~~ 210 (550)
... +.....++ ++.+|+++.+ ..|++++++++..+.+ ..+..... .+ .++++++.||++....
T Consensus 218 ----~~~-p~~iav~p~~g~lyv~d~~--~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i-a~~p~~g~lyv~d~~~- 288 (409)
T 3hrp_A 218 ----SGK-IGAVALDETEEWLYFVDSN--KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL-IYYFVDSNFYMSDQNL- 288 (409)
T ss_dssp ----CSC-CCBCEECTTSSEEEEECTT--CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE-EEETTTTEEEEEETTT-
T ss_pred ----cCC-cEEEEEeCCCCeEEEEECC--CcEEEEECCCCCEEEEecccccCCCCCCccccE-EEeCCCCEEEEEeCCC-
Confidence 000 00112345 5566666653 4799999887765444 22211111 33 4889778899886543
Q ss_pred CceeEEEEEEeCCCCCCCCCCCeeeCCC----------------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 211 PLESHLYCAKLYPDWNHTLEAPVKLTNG----------------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 211 ~~~~~l~~v~~~~~g~~~~~~~~~lt~~----------------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
..|++++. ++. ...+... ..-..++++++|+ |+++-+.. ...|.++++.+|
T Consensus 289 ---~~I~~~~~--~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~--~~~I~~~~~~~G 355 (409)
T 3hrp_A 289 ---SSVYKITP--DGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFK--GYCLRKLDILDG 355 (409)
T ss_dssp ---TEEEEECT--TCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTT--TCEEEEEETTTT
T ss_pred ---CEEEEEec--CCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCC--CCEEEEEECCCC
Confidence 36777776 442 1111110 1134567899987 43332202 247888886677
Q ss_pred ce
Q 008873 275 SL 276 (550)
Q Consensus 275 ~~ 276 (550)
+.
T Consensus 356 ~v 357 (409)
T 3hrp_A 356 YV 357 (409)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0009 Score=64.33 Aligned_cols=187 Identities=10% Similarity=0.062 Sum_probs=91.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~ 138 (550)
.|.+||+.+++.... + ......+..++|+|||+.++...... .|.+.++.+.....+... ....++.
T Consensus 99 ~v~lwd~~~~~~~~~-~-------~~h~~~v~~v~~sp~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKR-F-------VGHQSEVYSVAFSPDNRQILSAGAER----EIKLWNILGECKFSSAEKENHSDWVS 166 (343)
T ss_dssp EEEEEETTSSCEEEE-E-------ECCCSCEEEEEECSSTTEEEEEETTS----CEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred cEEEEECCCCcEEEE-E-------cCCCCcEEEEEECCCCCEEEEEcCCC----EEEEEeccCCceeeeecccCCCceee
Confidence 467899998875432 1 12234678899999999887665332 255555553322111100 0111111
Q ss_pred ccCccccCCCC-CccCCC-cEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKG-VTKYSG-GFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~-~~~~~~-~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
. -.|.+.... ....+. .++.....+| .|.+++..+.....+......+... .|+|+|+.|+..+. ++ ...|
T Consensus 167 ~-~~~~~~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~h~~~v~~~-~~s~~g~~l~sgs~-dg--~v~i 239 (343)
T 2xzm_R 167 C-VRYSPIMKSANKVQPFAPYFASVGWDG--RLKVWNTNFQIRYTFKAHESNVNHL-SISPNGKYIATGGK-DK--KLLI 239 (343)
T ss_dssp E-EEECCCCCSCSCCCSSCCEEEEEETTS--EEEEEETTTEEEEEEECCSSCEEEE-EECTTSSEEEEEET-TC--EEEE
T ss_pred e-eeeccccccccccCCCCCEEEEEcCCC--EEEEEcCCCceeEEEcCccccceEE-EECCCCCEEEEEcC-CC--eEEE
Confidence 1 001111000 001111 2444443444 4555665443333343333345555 49999987765544 33 2445
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
| ++...+. ....+........+.|+|++..++ ..++ ..+.+.++.+++.
T Consensus 240 w--d~~~~~~----~~~~~~~~~~v~~v~~sp~~~~la-~~~d----~~v~iw~~~~~~~ 288 (343)
T 2xzm_R 240 W--DILNLTY----PQREFDAGSTINQIAFNPKLQWVA-VGTD----QGVKIFNLMTQSK 288 (343)
T ss_dssp E--ESSCCSS----CSEEEECSSCEEEEEECSSSCEEE-EEES----SCEEEEESSSCCS
T ss_pred E--ECCCCcc----cceeecCCCcEEEEEECCCCCEEE-EECC----CCEEEEEeCCCCC
Confidence 5 5521111 223333333467789999998664 3222 2477778766653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00032 Score=64.83 Aligned_cols=183 Identities=11% Similarity=0.044 Sum_probs=98.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|++++++++....+.. ..-..-..++++|++..|++.. .. ...|++++.++...+.+.... ...
T Consensus 59 ~I~~~~~~g~~~~~~~~--------~~~~~p~~ia~d~~~~~lyv~d-~~--~~~I~~~~~~g~~~~~~~~~~-~~~--- 123 (267)
T 1npe_A 59 SIGRASLHGGEPTTIIR--------QDLGSPEGIALDHLGRTIFWTD-SQ--LDRIEVAKMDGTQRRVLFDTG-LVN--- 123 (267)
T ss_dssp EEEEEESSSCCCEEEEC--------TTCCCEEEEEEETTTTEEEEEE-TT--TTEEEEEETTSCSCEEEECSS-CSS---
T ss_pred EEEEEecCCCCcEEEEE--------CCCCCccEEEEEecCCeEEEEE-CC--CCEEEEEEcCCCCEEEEEECC-CCC---
Confidence 46677777665443311 1112345678899877665553 22 235899999876655543211 000
Q ss_pred cCccccCCCCCccCC-CcEEEEEccC-CccEEEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 140 HDCFTPLDKGVTKYS-GGFIWASEKT-GFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~-~~~~~~s~~~-g~~~l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
|. ....++ ++.+|+++.. ....|++++.++...+.+..... ....+ .++++++.||++.... ..|
T Consensus 124 -----P~--~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gi-a~d~~~~~lyv~d~~~----~~I 191 (267)
T 1npe_A 124 -----PR--GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGL-TFDAFSSQLCWVDAGT----HRA 191 (267)
T ss_dssp -----EE--EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEE-EEETTTTEEEEEETTT----TEE
T ss_pred -----cc--EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEE-EEcCCCCEEEEEECCC----CEE
Confidence 00 002244 4577777653 24689999988765544432221 22334 4899999999987654 368
Q ss_pred EEEEeCCCCCCCCCCCeee-CCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 217 YCAKLYPDWNHTLEAPVKL-TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~l-t~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
+++++ ++. ..+.+ .....-..+ +.|++.++++... ...+++++..+|+..+.+
T Consensus 192 ~~~~~--~g~----~~~~~~~~~~~P~gi--~~d~~~lyva~~~---~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 192 ECLNP--AQP----GRRKVLEGLQYPFAV--TSYGKNLYYTDWK---TNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEEET--TEE----EEEEEEECCCSEEEE--EEETTEEEEEETT---TTEEEEEETTTTEEEEEE
T ss_pred EEEec--CCC----ceEEEecCCCCceEE--EEeCCEEEEEECC---CCeEEEEeCCCCCceEEE
Confidence 88887 443 11222 211112222 3345566554322 237888888777655444
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00073 Score=63.85 Aligned_cols=182 Identities=16% Similarity=0.101 Sum_probs=94.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+++++.... + ......+..+.|+||++.++...... .|.+.|+.+++.......... .+.
T Consensus 88 ~i~vwd~~~~~~~~~-~-------~~~~~~v~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~-~v~- 153 (312)
T 4ery_A 88 TLKIWDVSSGKCLKT-L-------KGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVKTGKCLKTLPAHSD-PVS- 153 (312)
T ss_dssp EEEEEETTTCCEEEE-E-------ECCSSCEEEEEECSSSSEEEEEETTS----CEEEEETTTCCEEEEECCCSS-CEE-
T ss_pred EEEEEECCCCcEEEE-E-------cCCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCEEEEEecCCCC-cEE-
Confidence 467889998875432 1 12244677889999999887765443 377888888875433221111 010
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCce-eecccc-cCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTC-LGPITE-GDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~-~~~lT~-~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.+ .+++++ +++....+| .|.++|+.+++ ...+.. ....+... .|+|+++.|+..+.. + ...+
T Consensus 154 --~~-------~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d-~--~i~i 218 (312)
T 4ery_A 154 --AV-------HFNRDGSLIVSSSYDG--LCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLD-N--TLKL 218 (312)
T ss_dssp --EE-------EECTTSSEEEEEETTS--CEEEEETTTCCEEEEECCSSCCCEEEE-EECTTSSEEEEEETT-T--EEEE
T ss_pred --EE-------EEcCCCCEEEEEeCCC--cEEEEECCCCceeeEEeccCCCceEEE-EECCCCCEEEEEcCC-C--eEEE
Confidence 01 233443 555544445 46677766543 233322 22233333 599999887765543 2 2444
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCc---eEEEEEC-CCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKG---KHVAVLD-HNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~---~~~~~~s-~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
| ++. .+. ....+..... .....++ +++++++ +.+. ...+++.++.+++.++.+.
T Consensus 219 w--d~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg~~---dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 219 W--DYS-KGK----CLKTYTGHKNEKYCIFANFSVTGGKWIV-SGSE---DNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp E--ETT-TTE----EEEEECSSCCSSSCCCEEEECSSSCEEE-ECCT---TSCEEEEETTTCCEEEEEC
T ss_pred E--ECC-CCc----EEEEEEecCCceEEEEEEEEeCCCcEEE-EECC---CCEEEEEECCCchhhhhhh
Confidence 4 552 221 1222221111 1112333 5565554 3222 2468888887777555543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0001 Score=70.62 Aligned_cols=192 Identities=11% Similarity=-0.018 Sum_probs=105.3
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCc----eEEEEcccC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP----VSWMDLQCG 79 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~----~~~l~~~~~ 79 (550)
-.++.|||||++|+....+ ..|.+||+++++ ...+.
T Consensus 14 v~~~~~s~~~~~l~~~~~d------------------------------------~~v~iw~~~~~~~~~~~~~~~---- 53 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITSWD------------------------------------GSLTVYKFDIQAKNVDLLQSL---- 53 (342)
T ss_dssp EEEEEEEGGGTEEEEEETT------------------------------------SEEEEEEEETTTTEEEEEEEE----
T ss_pred EEEEEEcCCCCEEEEEcCC------------------------------------CeEEEEEeCCCCccccceeee----
Confidence 3678899999999876432 146778888776 33331
Q ss_pred CCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEEC-CCCceEEEEE--eecCceeeccCccccCCCCCccCCC
Q 008873 80 GTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDI-KTGQRKVILV--EELDSWVNLHDCFTPLDKGVTKYSG 155 (550)
Q Consensus 80 ~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~-~~g~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (550)
.....+..++|+|||+ .++...... .|++.++ ++++...+.. ...... . + .++++
T Consensus 54 -----~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~v~-~----l-------~~~~~ 112 (342)
T 1yfq_A 54 -----RYKHPLLCCNFIDNTDLQIYVGTVQG----EILKVDLIGSPSFQALTNNEANLGIC-R----I-------CKYGD 112 (342)
T ss_dssp -----ECSSCEEEEEEEESSSEEEEEEETTS----CEEEECSSSSSSEEECBSCCCCSCEE-E----E-------EEETT
T ss_pred -----ecCCceEEEEECCCCCcEEEEEcCCC----eEEEEEeccCCceEeccccCCCCceE-E----E-------EeCCC
Confidence 2244678899999999 777765332 3888888 8887755433 221110 0 1 12333
Q ss_pred cEEEEEccCCccEEEEEeCCC---------ce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCC
Q 008873 156 GFIWASEKTGFRHLYLHDING---------TC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW 225 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~---------~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g 225 (550)
.+++....+| .|.+++..+ ++ ...+. ....+.... |++++ ++ ++..++ .|...++...+
T Consensus 113 ~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~~--l~-~~~~d~----~i~i~d~~~~~ 181 (342)
T 1yfq_A 113 DKLIAASWDG--LIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD-TNSSR--LI-VGMNNS----QVQWFRLPLCE 181 (342)
T ss_dssp TEEEEEETTS--EEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE-ECSSE--EE-EEESTT----EEEEEESSCCT
T ss_pred CEEEEEcCCC--eEEEEcccccccccccccCCeeeEEe-eCCceEEEE-ecCCc--EE-EEeCCC----eEEEEECCccc
Confidence 3555544444 466666543 32 22333 233344443 77765 44 444332 45555762102
Q ss_pred CCCCCCCeee--CCCCceEEEEECC-CCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 226 NHTLEAPVKL--TNGKGKHVAVLDH-NMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 226 ~~~~~~~~~l--t~~~~~~~~~~s~-dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
.. ..... ........+.|+| +++.++....+ ..+.+.++..+
T Consensus 182 ~~---~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----g~i~i~~~~~~ 226 (342)
T 1yfq_A 182 DD---NGTIEESGLKYQIRDVALLPKEQEGYACSSID----GRVAVEFFDDQ 226 (342)
T ss_dssp TC---CCEEEECSCSSCEEEEEECSGGGCEEEEEETT----SEEEEEECCTT
T ss_pred cc---cceeeecCCCCceeEEEECCCCCCEEEEEecC----CcEEEEEEcCC
Confidence 10 11122 1223466778999 99877655432 36666666444
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00049 Score=66.74 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=105.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|||||++||....+ + .|.+||++++....+..-
T Consensus 14 v~~~~~s~~~~~l~~~~~d-g-----------------------------------~i~iw~~~~~~~~~~~~~------ 51 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSD-K-----------------------------------TIKIFEVEGETHKLIDTL------ 51 (379)
T ss_dssp EEEEEECSSSSEEEEEETT-S-----------------------------------CEEEEEEETTEEEEEEEE------
T ss_pred EEEEEEcCCCCEEEEEECC-C-----------------------------------cEEEEecCCCcceeeeEe------
Confidence 3678899999999875433 1 256777775433332111
Q ss_pred CCCCceeEEEEECCC--CeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-ceeeccCccccCCCCCccCCC---cE
Q 008873 84 NYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGVTKYSG---GF 157 (550)
Q Consensus 84 ~~~~~~~~~~~wspD--g~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~ 157 (550)
......+..++|+|+ ++.++...... .|.+.++.+++...+...... ..+.. . .|+++ .+
T Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~v~~---~-------~~~~~~~~~~ 117 (379)
T 3jrp_A 52 TGHEGPVWRVDWAHPKFGTILASCSYDG----KVLIWKEENGRWSQIAVHAVHSASVNS---V-------QWAPHEYGPL 117 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTS----CEEEEEEETTEEEEEEEECCCSSCEEE---E-------EECCGGGCSE
T ss_pred cCCCCcEEEEEeCCCCCCCEEEEeccCC----EEEEEEcCCCceeEeeeecCCCcceEE---E-------EeCCCCCCCE
Confidence 223456788999988 78777765432 266666777764444332211 11100 1 12333 25
Q ss_pred EEEEccCCccEEEEEeCCCce---eecccccCeEEEEEEeEee-------------cCCEEEEEEcCCCCceeEEEEEEe
Q 008873 158 IWASEKTGFRHLYLHDINGTC---LGPITEGDWMVEQIVGVNE-------------ASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 158 ~~~s~~~g~~~l~~~~~~~~~---~~~lT~~~~~~~~~~~~s~-------------dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
++....+| .|.++++..+. ...+......+.... |+| +++.|+..+.. + ...+|.+..
T Consensus 118 l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~ 191 (379)
T 3jrp_A 118 LLVASSDG--KVSVVEFKENGTTSPIIIDAHAIGVNSAS-WAPATIEEDGEHNGTKESRKFVTGGAD-N--LVKIWKYNS 191 (379)
T ss_dssp EEEEETTS--EEEEEECCTTSCCCEEEEECCTTCEEEEE-ECCCC----------CTTCEEEEEETT-S--CEEEEEEET
T ss_pred EEEecCCC--cEEEEecCCCCceeeEEecCCCCceEEEE-EcCccccccccccCCCCCCEEEEEeCC-C--eEEEEEecC
Confidence 55554445 46666655442 222333333445444 888 57666655443 3 256664442
Q ss_pred CCCCCCCCCCCeeeCC-CCceEEEEECCC---CCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 222 YPDWNHTLEAPVKLTN-GKGKHVAVLDHN---MRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 222 ~~~g~~~~~~~~~lt~-~~~~~~~~~s~d---g~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
... .......+.. ......+.|+|+ +++|+....+ ..+.+.++.+++
T Consensus 192 --~~~-~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d----g~i~iwd~~~~~ 242 (379)
T 3jrp_A 192 --DAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD----RTCIIWTQDNEQ 242 (379)
T ss_dssp --TTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT----SCEEEEEESSTT
T ss_pred --CCc-ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC----CEEEEEeCCCCC
Confidence 111 0001122222 233677799999 6665544333 357777776653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00017 Score=78.35 Aligned_cols=201 Identities=8% Similarity=0.001 Sum_probs=111.1
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++||....+ ..|.+||+.+++.... + .
T Consensus 59 ~~~~~s~~~~~l~~~~~d------------------------------------g~i~vw~~~~~~~~~~-~-------~ 94 (814)
T 3mkq_A 59 RAGKFIARKNWIIVGSDD------------------------------------FRIRVFNYNTGEKVVD-F-------E 94 (814)
T ss_dssp EEEEEEGGGTEEEEEETT------------------------------------SEEEEEETTTCCEEEE-E-------E
T ss_pred EEEEEeCCCCEEEEEeCC------------------------------------CeEEEEECCCCcEEEE-E-------e
Confidence 567889998888775332 2478899998876432 1 1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC-ceEEEEEeecCceeeccCccccCCCCCccCC-Cc-EEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-QRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GG-FIWAS 161 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~s 161 (550)
.....+..++|+|||+.++...... .|.+.+.+++ ......... ...+.. . .|++ ++ +++..
T Consensus 95 ~~~~~v~~~~~s~~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~-~~~v~~---~-------~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTKPYVLSGSDDL----TVKLWNWENNWALEQTFEGH-EHFVMC---V-------AFNPKDPSTFASG 159 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTS----EEEEEEGGGTSEEEEEEECC-SSCEEE---E-------EEETTEEEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEcCCC----EEEEEECCCCceEEEEEcCC-CCcEEE---E-------EEEcCCCCEEEEE
Confidence 2245688899999999887665332 3666677766 332222211 111100 0 2344 33 44444
Q ss_pred ccCCccEEEEEeCCCcee-ecccccC-eEEEEEEeEee--cCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 162 EKTGFRHLYLHDINGTCL-GPITEGD-WMVEQIVGVNE--ASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 162 ~~~g~~~l~~~~~~~~~~-~~lT~~~-~~~~~~~~~s~--dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
..+| .|.+++..+++. ..+..+. ..+... .|+| +++.|+..+ .++ .|...++. .+. ....+..
T Consensus 160 ~~dg--~v~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~~~~-~dg----~i~~~d~~-~~~----~~~~~~~ 226 (814)
T 3mkq_A 160 CLDR--TVKVWSLGQSTPNFTLTTGQERGVNYV-DYYPLPDKPYMITAS-DDL----TIKIWDYQ-TKS----CVATLEG 226 (814)
T ss_dssp ETTS--EEEEEETTCSSCSEEEECCCTTCCCEE-EECCSTTCCEEEEEC-TTS----EEEEEETT-TTE----EEEEEEC
T ss_pred eCCC--eEEEEECCCCcceeEEecCCCCCEEEE-EEEECCCCCEEEEEe-CCC----EEEEEECC-CCc----EEEEEcC
Confidence 4444 577777655432 2222221 223333 4777 777665543 333 34444652 221 2333332
Q ss_pred C-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 238 G-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 238 ~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
. .....+.|+|+++.++....+ ..+.+.++.+++....+.
T Consensus 227 ~~~~v~~~~~~~~~~~l~~~~~d----g~v~vwd~~~~~~~~~~~ 267 (814)
T 3mkq_A 227 HMSNVSFAVFHPTLPIIISGSED----GTLKIWNSSTYKVEKTLN 267 (814)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT----SCEEEEETTTCSEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCcEEEEee
Confidence 2 236667899999977655433 368888887777555443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00031 Score=68.65 Aligned_cols=187 Identities=13% Similarity=0.053 Sum_probs=94.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+.++....+... ......+..++|+||++.++...... .|.+.++.+.....+...... +..
T Consensus 142 ~i~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~h~~~--v~~ 209 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKT------DSWDYWYCCVDVSVSRQMLATGDSTG----RLLLLGLDGHEIFKEKLHKAK--VTH 209 (383)
T ss_dssp EEEEEETTSCEEEEEECC------CCSSCCEEEEEEETTTTEEEEEETTS----EEEEEETTSCEEEEEECSSSC--EEE
T ss_pred EEEEEECCCCceEEEecc------CCCCCCeEEEEECCCCCEEEEECCCC----CEEEEECCCCEEEEeccCCCc--EEE
Confidence 467889998666555332 12235678899999999887765332 477778854433443322221 110
Q ss_pred cCccccCCCCCccCCCc--EEEEEccCCccEEEEEeCCC----ceeecccccCeEEEEEEeEee-cCCEEEEEEcCCCCc
Q 008873 140 HDCFTPLDKGVTKYSGG--FIWASEKTGFRHLYLHDING----TCLGPITEGDWMVEQIVGVNE-ASGQVYFTGTLDGPL 212 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~s~~~g~~~l~~~~~~~----~~~~~lT~~~~~~~~~~~~s~-dg~~l~f~~~~~~~~ 212 (550)
+ .|++++ +++....+| .|.++|+.. +...........+..+ .|+| +|+.|+..+.. +
T Consensus 210 ---~-------~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~~l~~~~~d-~-- 273 (383)
T 3ei3_B 210 ---A-------EFNPRCDWLMATSSVDA--TVKLWDLRNIKDKNSYIAEMPHEKPVNAA-YFNPTDSTKLLTTDQR-N-- 273 (383)
T ss_dssp ---E-------EECSSCTTEEEEEETTS--EEEEEEGGGCCSTTCEEEEEECSSCEEEE-EECTTTSCEEEEEESS-S--
T ss_pred ---E-------EECCCCCCEEEEEeCCC--EEEEEeCCCCCcccceEEEecCCCceEEE-EEcCCCCCEEEEEcCC-C--
Confidence 1 233433 555544445 466666543 2222211233345555 4999 98877755543 2
Q ss_pred eeEEEEEEeCCCCCCCCCCCeeeCCC-------CceEEEEECCCCCEEEEeec-----CCCCCCEEEEEEcCCCceeEec
Q 008873 213 ESHLYCAKLYPDWNHTLEAPVKLTNG-------KGKHVAVLDHNMRNFVDFHD-----SLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 213 ~~~l~~v~~~~~g~~~~~~~~~lt~~-------~~~~~~~~s~dg~~l~~~~s-----~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.|...++. .+. .+..+... .......|+|++..+++..+ .......+.+.++.+++.+..+
T Consensus 274 --~i~iwd~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 274 --EIRVYSSY-DWS----KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp --EEEEEETT-BTT----SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEE
T ss_pred --cEEEEECC-CCc----cccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeee
Confidence 34444552 221 11111100 00111244455444443332 1223457888898888766555
Q ss_pred c
Q 008873 281 Y 281 (550)
Q Consensus 281 ~ 281 (550)
.
T Consensus 347 ~ 347 (383)
T 3ei3_B 347 R 347 (383)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00053 Score=66.31 Aligned_cols=117 Identities=9% Similarity=0.132 Sum_probs=72.9
Q ss_pred cEEEEEccCCccEEEEEeCCCceeecc---c---c----cCeEEEE--EEeEeecCCEEEEEEcCC--C---CceeEEEE
Q 008873 156 GFIWASEKTGFRHLYLHDINGTCLGPI---T---E----GDWMVEQ--IVGVNEASGQVYFTGTLD--G---PLESHLYC 218 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~~~~~~l---T---~----~~~~~~~--~~~~s~dg~~l~f~~~~~--~---~~~~~l~~ 218 (550)
.++|.+.. | ++|++|..+...+.+ . . ..|.... ...++++++++|+....+ + .....|+.
T Consensus 239 ~~~~vs~~-g--~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 239 RLVWPTYT-G--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp EEEEEBTT-S--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred cEEEEeCC-C--EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence 37888773 3 699999876543222 1 1 2233221 235789999999986521 1 12368999
Q ss_pred EEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 219 AKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
+|+. .+. ..+++.-+....++.+|+|++.++|+.... ...+.++|..+++.++.+..
T Consensus 316 iD~~-t~k----v~~~i~vg~~~~~lavs~D~~~~ly~tn~~--~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 316 LDAK-TGE----RLAKFEMGHEIDSINVSQDEKPLLYALSTG--DKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EETT-TCC----EEEEEEEEEEECEEEECSSSSCEEEEEETT--TTEEEEEETTTCCEEEEECC
T ss_pred EECC-CCe----EEEEEECCCCcceEEECCCCCeEEEEEcCC--CCeEEEEECCCCcEEEEecC
Confidence 9983 222 345555444456778999998555554432 24899999999987766643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00095 Score=63.70 Aligned_cols=183 Identities=6% Similarity=-0.027 Sum_probs=99.7
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEec--CCCceEEEEEECCCCceEEEEEeecCce
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR--SQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r--~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
..|+++|.++++...+... .........+.++|||++++..... ......||.++.++++.+.+......
T Consensus 112 ~~i~~~d~~~~~~~~~~~~------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 183 (333)
T 2dg1_A 112 GGIFAATENGDNLQDIIED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV-- 183 (333)
T ss_dssp CEEEEECTTSCSCEEEECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS--
T ss_pred ceEEEEeCCCCEEEEEEcc------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc--
Confidence 3688889888876643211 0112346678999999866544321 11235799999998887766542211
Q ss_pred eeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCC--Cceeeccc-------ccCeEEEEEEeEeecCCEEEEEE
Q 008873 137 VNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDIN--GTCLGPIT-------EGDWMVEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~--~~~~~~lT-------~~~~~~~~~~~~s~dg~~l~f~~ 206 (550)
.. .+ .+++++ .+|+++. +...|++++.+ +.....+. .+......+ .++++|+ ||+..
T Consensus 184 ~~---~i-------~~~~dg~~l~v~~~-~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i-~~d~~G~-l~v~~ 250 (333)
T 2dg1_A 184 AN---GI-------ALSTDEKVLWVTET-TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC-CIDSDDN-LYVAM 250 (333)
T ss_dssp EE---EE-------EECTTSSEEEEEEG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE-EEBTTCC-EEEEE
T ss_pred cc---ce-------EECCCCCEEEEEeC-CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCce-EECCCCC-EEEEE
Confidence 00 01 235554 5655543 22468888874 33222111 111223333 4788875 66554
Q ss_pred cCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC-------ceEEEEECCCCCEEEEeecCC--CCCCEEEEEEcC
Q 008873 207 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-------GKHVAVLDHNMRNFVDFHDSL--DSPPRILLCSLQ 272 (550)
Q Consensus 207 ~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~-------~~~~~~~s~dg~~l~~~~s~~--~~p~~l~~~~~~ 272 (550)
... ..|++++. ++. ....+.... ....+.+++|++.|+++.... .....|+.+++.
T Consensus 251 ~~~----~~v~~~d~--~g~----~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 251 YGQ----GRVLVFNK--RGY----PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ETT----TEEEEECT--TSC----EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred cCC----CEEEEECC--CCC----EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 332 25666665 342 223333221 245678899988887665543 233568887764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00022 Score=70.64 Aligned_cols=188 Identities=12% Similarity=0.027 Sum_probs=96.2
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeec-C---
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-D--- 134 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~-~--- 134 (550)
.|.+||+.+++.. .+. .....+..++|+|||+.++...... .|.+.++.+++......... .
T Consensus 162 ~i~iwd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s~~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~ 228 (420)
T 3vl1_A 162 QLKIWSVKDGSNPRTLI---------GHRATVTDIAIIDRGRNVLSASLDG----TIRLWECGTGTTIHTFNRKENPHDG 228 (420)
T ss_dssp EEEEEETTTCCCCEEEE---------CCSSCEEEEEEETTTTEEEEEETTS----CEEEEETTTTEEEEEECBTTBTTCC
T ss_pred eEEEEeCCCCcCceEEc---------CCCCcEEEEEEcCCCCEEEEEcCCC----cEEEeECCCCceeEEeecCCCCCCC
Confidence 4688999887543 332 2245678899999999887665433 27777888887654433210 0
Q ss_pred ----ceeeccCcc-----ccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCce-eecccc-cCeEEEEEEeEeecCCEE
Q 008873 135 ----SWVNLHDCF-----TPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTC-LGPITE-GDWMVEQIVGVNEASGQV 202 (550)
Q Consensus 135 ----~~~~~~~~~-----~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~-~~~lT~-~~~~~~~~~~~s~dg~~l 202 (550)
.|....... ...-....+++++ +++....+| .|.++|+.+++ ...+.. ....+.... |+|+++.+
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~ 305 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG--VITVHNVFSKEQTIQLPSKFTCSCNSLT-VDGNNANY 305 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS--CEEEEETTTCCEEEEECCTTSSCEEEEE-ECSSCTTE
T ss_pred ccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC--eEEEEECCCCceeEEcccccCCCceeEE-EeCCCCCE
Confidence 111100000 0000111456665 555555455 36677765544 333332 233455554 99999845
Q ss_pred EEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 203 YFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 203 ~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
++++..++ .|+..++. .+.. ....+.. ........++++++.|+.. +. -..+.+.++.+++
T Consensus 306 l~~g~~dg----~i~vwd~~-~~~~---~~~~~~~~~~~~v~~~~~~~~~~l~s~-~~---d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 306 IYAGYENG----MLAQWDLR-SPEC---PVGEFLINEGTPINNVYFAAGALFVSS-GF---DTSIKLDIISDPE 367 (420)
T ss_dssp EEEEETTS----EEEEEETT-CTTS---CSEEEEESTTSCEEEEEEETTEEEEEE-TT---TEEEEEEEECCTT
T ss_pred EEEEeCCC----eEEEEEcC-CCcC---chhhhhccCCCCceEEEeCCCCEEEEe-cC---CccEEEEeccCCC
Confidence 55555543 34445762 2221 1334432 2222333355677655433 22 2367777765543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.2e-05 Score=73.66 Aligned_cols=174 Identities=11% Similarity=0.023 Sum_probs=91.6
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEEee-cCceee
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVN 138 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~ 138 (550)
|.+||+.+++.... + ......+..++|+|++. .++... ... .|.+.|+.+++........ ....+.
T Consensus 163 v~iwd~~~~~~~~~-~-------~~h~~~v~~v~~s~~~~~~~~s~~-~dg---~v~~wd~~~~~~~~~~~~~~~~~~v~ 230 (357)
T 4g56_B 163 VKVWDLSQKAVLKS-Y-------NAHSSEVNCVAACPGKDTIFLSCG-EDG---RILLWDTRKPKPATRIDFCASDTIPT 230 (357)
T ss_dssp EEEEETTTTEEEEE-E-------CCCSSCEEEEEECTTCSSCEEEEE-TTS---CEEECCTTSSSCBCBCCCTTCCSCEE
T ss_pred EEEEECCCCcEEEE-E-------cCCCCCEEEEEEccCCCceeeeec-cCC---ceEEEECCCCceeeeeeecccccccc
Confidence 57889998876432 1 12244677899999997 444443 222 2666688877643222111 111110
Q ss_pred ccCccccCCCCCccCCC--cEEEEEccCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 139 LHDCFTPLDKGVTKYSG--GFIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~~~~~s~~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.. .++++ .++.....++ .|.++++.+++ .+.+......+.... |+|+++.++.++..++. ..
T Consensus 231 ---~v-------~~sp~~~~~la~g~~d~--~i~~wd~~~~~~~~~~~~~~~~v~~l~-~sp~~~~~lasgs~D~~--i~ 295 (357)
T 4g56_B 231 ---SV-------TWHPEKDDTFACGDETG--NVSLVNIKNPDSAQTSAVHSQNITGLA-YSYHSSPFLASISEDCT--VA 295 (357)
T ss_dssp ---EE-------EECTTSTTEEEEEESSS--CEEEEESSCGGGCEEECCCSSCEEEEE-ECSSSSCCEEEEETTSC--EE
T ss_pred ---ch-------hhhhcccceEEEeeccc--ceeEEECCCCcEeEEEeccceeEEEEE-EcCCCCCEEEEEeCCCE--EE
Confidence 01 12332 3554444444 46677776554 333433333455554 99998777767666542 45
Q ss_pred EEEEEeCCCCCCCCCCCeeeC-CCCceEEEEECC-CCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLT-NGKGKHVAVLDH-NMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt-~~~~~~~~~~s~-dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
|| ++ ... +..+.. .......++||| |++.|+ +.+. + ..+.+.++..
T Consensus 296 iw--d~--~~~----~~~~~~~H~~~V~~vafsP~d~~~l~-s~s~-D--g~v~iW~~~~ 343 (357)
T 4g56_B 296 VL--DA--DFS----EVFRDLSHRDFVTGVAWSPLDHSKFT-TVGW-D--HKVLHHHLPS 343 (357)
T ss_dssp EE--CT--TSC----EEEEECCCSSCEEEEEECSSSTTEEE-EEET-T--SCEEEEECC-
T ss_pred EE--EC--CCC----cEeEECCCCCCEEEEEEeCCCCCEEE-EEcC-C--CeEEEEECCC
Confidence 55 55 222 222222 233467789998 677664 3332 1 3566666643
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00068 Score=64.44 Aligned_cols=181 Identities=14% Similarity=0.099 Sum_probs=94.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+.+++.... + ......+..++|+||++.++....... |.+.++.+.....+.... .++..
T Consensus 88 ~v~~wd~~~~~~~~~-~-------~~h~~~v~~~~~~~~~~~l~s~s~D~~----i~vwd~~~~~~~~~~~h~--~~v~~ 153 (319)
T 3frx_A 88 TLRLWDVATGETYQR-F-------VGHKSDVMSVDIDKKASMIISGSRDKT----IKVWTIKGQCLATLLGHN--DWVSQ 153 (319)
T ss_dssp EEEEEETTTTEEEEE-E-------ECCSSCEEEEEECTTSCEEEEEETTSC----EEEEETTSCEEEEECCCS--SCEEE
T ss_pred EEEEEECCCCCeeEE-E-------ccCCCcEEEEEEcCCCCEEEEEeCCCe----EEEEECCCCeEEEEeccC--CcEEE
Confidence 467899999876432 1 122446788999999998877654332 444566654433332211 12211
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
-.+.+.. ..+.++ +++....+| .|.+.++...+.. .+......+.... |+|+|+.|+-.+. ++ ...||
T Consensus 154 -~~~~~~~---~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~h~~~v~~~~-~sp~g~~l~s~~~-dg--~i~iw 223 (319)
T 3frx_A 154 -VRVVPNE---KADDDSVTIISAGNDK--MVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGK-DG--EIMLW 223 (319)
T ss_dssp -EEECCC---------CCEEEEEETTS--CEEEEETTTTEEEEEECCCCSCEEEEE-ECTTSSEEEEEET-TC--EEEEE
T ss_pred -EEEccCC---CCCCCccEEEEEeCCC--EEEEEECCcchhheeecCCCCcEEEEE-EcCCCCEEEEEeC-CC--eEEEE
Confidence 0111111 011223 344433344 4556666554432 3433344455554 9999987765544 32 24444
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
++. .+. ....+........+.|+||+..++..... .+.+.++..+..
T Consensus 224 --d~~-~~~----~~~~~~~~~~v~~~~~sp~~~~la~~~~~-----~i~v~~~~~~~~ 270 (319)
T 3frx_A 224 --NLA-AKK----AMYTLSAQDEVFSLAFSPNRYWLAAATAT-----GIKVFSLDPQYL 270 (319)
T ss_dssp --ETT-TTE----EEEEEECCSCEEEEEECSSSSEEEEEETT-----EEEEEEETTEEE
T ss_pred --ECC-CCc----EEEEecCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEEeCcCee
Confidence 652 221 23334444457778999999887655432 466667655443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00019 Score=70.54 Aligned_cols=164 Identities=10% Similarity=0.094 Sum_probs=92.9
Q ss_pred CCceeEEEEECC-CCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc
Q 008873 86 DEEYLARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK 163 (550)
Q Consensus 86 ~~~~~~~~~wsp-Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 163 (550)
....+..++|+| ++..++...... .|.+.++.+++.............- .+.+ ..+++ +++....
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~ 164 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDK----TLKVWDTNTLQTADVFNFEETVYSH---HMSP------VSTKHCLVAVGTR 164 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTS----EEEEEETTTTEEEEEEECSSCEEEE---EECS------SCSSCCEEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCC----eEEEeeCCCCccceeccCCCceeee---Eeec------CCCCCcEEEEEcC
Confidence 345688899999 555666654332 4788889988876655533221110 1111 12222 5555555
Q ss_pred CCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee-------
Q 008873 164 TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL------- 235 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l------- 235 (550)
+| .|.++++.+++ ...+......+.... |+|+++.+++++..++. ..+| ++..... ....+
T Consensus 165 ~~--~v~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~ll~~~~~dg~--i~i~--d~~~~~~----~~~~~~~~~~~~ 233 (408)
T 4a11_B 165 GP--KVQLCDLKSGSCSHILQGHRQEILAVS-WSPRYDYILATASADSR--VKLW--DVRRASG----CLITLDQHNGKK 233 (408)
T ss_dssp SS--SEEEEESSSSCCCEEECCCCSCEEEEE-ECSSCTTEEEEEETTSC--EEEE--ETTCSSC----CSEECCTTTTCS
T ss_pred CC--eEEEEeCCCcceeeeecCCCCcEEEEE-ECCCCCcEEEEEcCCCc--EEEE--ECCCCCc----cccccccccccc
Confidence 55 46677766544 334444444455554 99999877767666542 4555 5421110 11111
Q ss_pred --------C-CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 236 --------T-NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 236 --------t-~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
. .......+.|+|++++|+....+ ..+.+.++.+++..
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~ 280 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD----NRMRLWNSSNGENT 280 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCBC
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCC----CeEEEEECCCCccc
Confidence 1 11236777899999988765443 36888898877643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00073 Score=66.65 Aligned_cols=160 Identities=8% Similarity=0.056 Sum_probs=82.5
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCc
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGF 166 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~ 166 (550)
..+..++|+|||++++...... .|.+.+..+.....+........ . + .|++++ +++....+|
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg----~i~i~~~~~~~~~~~~~~~~~v~-~----~-------~~~~~~~~l~~~~~d~- 171 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENG----ELRLWNKTGALLNVLNFHRAPIV-S----V-------KWNKDGTHIISMDVEN- 171 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTS----CEEEEETTSCEEEEECCCCSCEE-E----E-------EECTTSSEEEEEETTC-
T ss_pred CceEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCeeeeccCCCccEE-E----E-------EECCCCCEEEEEecCC-
Confidence 3688899999999888765432 25555644433333322221111 0 1 234443 454444444
Q ss_pred cEEEEEeCCCceee-cccccCeE---------------EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCC
Q 008873 167 RHLYLHDINGTCLG-PITEGDWM---------------VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230 (550)
Q Consensus 167 ~~l~~~~~~~~~~~-~lT~~~~~---------------~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~ 230 (550)
.|.++++.+++.. .+...... +... .|++++ .++ ++..++ .|+..++. .+.
T Consensus 172 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~g----~i~~~d~~-~~~---- 238 (425)
T 1r5m_A 172 -VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDV-EWVDDD-KFV-IPGPKG----AIFVYQIT-EKT---- 238 (425)
T ss_dssp -CEEEEETTTTEEEEEECCC---------------CCCBSCC-EEEETT-EEE-EECGGG----CEEEEETT-CSS----
T ss_pred -eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEE-EEcCCC-EEE-EEcCCC----eEEEEEcC-CCc----
Confidence 4666676555432 22221111 2222 477775 343 333332 35555662 221
Q ss_pred CCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 231 APVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 231 ~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
....+... .....+.|+|+++.|+....+ ..+.++++.+++....+.
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~ 286 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDD----GTLRIWHGGNGNSQNCFY 286 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEECSSSBSCSEEEC
T ss_pred eeeeeccCCCceEEEEECCCCCEEEEEcCC----CEEEEEECCCCccceEec
Confidence 23344332 346777899999977655433 368888887766544443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00018 Score=69.74 Aligned_cols=174 Identities=9% Similarity=-0.111 Sum_probs=87.5
Q ss_pred EEEEECCCCceEEE-EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEE-Eeec--Cce
Q 008873 61 LGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL-VEEL--DSW 136 (550)
Q Consensus 61 l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~-~~~~--~~~ 136 (550)
|.+||+++++.... .+ ......+..+.|+|||+.++...... . |.+.+.++++...+. .... ...
T Consensus 76 i~vwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~--~--v~i~d~~~~~~~~~~~~~~~~~~~~ 144 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVI-------LRINRAARCVRWAPNEKKFAVGSGSR--V--ISICYFEQENDWWVCKHIKKPIRST 144 (372)
T ss_dssp EEEEEEETTEEEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTS--S--EEEEEEETTTTEEEEEEECTTCCSC
T ss_pred EEEEECCCCeeeeeEEe-------ecCCCceeEEEECCCCCEEEEEeCCC--E--EEEEEecCCCcceeeeeeecccCCC
Confidence 67788888764332 22 22345678899999999887775432 2 444444444422111 1111 111
Q ss_pred eeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCC-------------------CceeecccccCeEEEEEEeEe
Q 008873 137 VNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDIN-------------------GTCLGPITEGDWMVEQIVGVN 196 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~-------------------~~~~~~lT~~~~~~~~~~~~s 196 (550)
+. .+ .+++++ +++....+|. |.+++.. +.....+......+... .|+
T Consensus 145 i~---~~-------~~~~~~~~l~~~~~dg~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~ 211 (372)
T 1k8k_C 145 VL---SL-------DWHPNSVLLAAGSCDFK--CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV-CFS 211 (372)
T ss_dssp EE---EE-------EECTTSSEEEEEETTSC--EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE-EEC
T ss_pred ee---EE-------EEcCCCCEEEEEcCCCC--EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE-EEC
Confidence 10 01 234443 5555544554 4445531 22333443333345555 499
Q ss_pred ecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 197 EASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 197 ~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
++++.|+..+.. + .|...++. .+. ....+... .....+.|+|+++.++.. ++ ..+.++++.+
T Consensus 212 ~~~~~l~~~~~d-~----~i~i~d~~-~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d----~~i~i~~~~~ 274 (372)
T 1k8k_C 212 ANGSRVAWVSHD-S----TVCLADAD-KKM----AVATLASETLPLLAVTFITESSLVAAG-HD----CFPVLFTYDS 274 (372)
T ss_dssp SSSSEEEEEETT-T----EEEEEEGG-GTT----EEEEEECSSCCEEEEEEEETTEEEEEE-TT----SSCEEEEEET
T ss_pred CCCCEEEEEeCC-C----EEEEEECC-CCc----eeEEEccCCCCeEEEEEecCCCEEEEE-eC----CeEEEEEccC
Confidence 999877766543 2 34444652 222 23333332 246777899999765433 22 2445555544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.09 E-value=8.5e-05 Score=73.34 Aligned_cols=168 Identities=11% Similarity=-0.002 Sum_probs=90.3
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
|.+||+.+++....-.. ......+..++|+|||+.++...... .|.+.|+.+++............
T Consensus 156 i~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~---- 221 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGP------DVHPDTIYSVDWSRDGALICTSCRDK----RVRVIEPRKGTVVAEKDRPHEGT---- 221 (402)
T ss_dssp EEEEETTTTEEEEEECT------TTCCSCEEEEEECTTSSCEEEEETTS----EEEEEETTTTEEEEEEECSSCSS----
T ss_pred EEEEECCCCCccEEEec------CCCCCceEEEEECCCCCEEEEEecCC----cEEEEeCCCCceeeeeccCCCCC----
Confidence 68899998865432100 12244678899999999887765332 48888999887654331111100
Q ss_pred CccccCCCCCccCCCc-EEEEE-ccCCccEEEEEeCCCcee--eccc-ccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 141 DCFTPLDKGVTKYSGG-FIWAS-EKTGFRHLYLHDINGTCL--GPIT-EGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~~-~~~~s-~~~g~~~l~~~~~~~~~~--~~lT-~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.... ..|++++ +++.. .+.....|.++++.+.+. ...+ .....+..+ .|+++++.|++++..++. ..
T Consensus 222 -~~~~----~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~g~~dg~--i~ 293 (402)
T 2aq5_A 222 -RPVH----AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP-FFDPDTNIVYLCGKGDSS--IR 293 (402)
T ss_dssp -SCCE----EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE-EEETTTTEEEEEETTCSC--EE
T ss_pred -cceE----EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE-EEcCCCCEEEEEEcCCCe--EE
Confidence 0000 0244555 44443 223345788888765432 1111 111123334 499999999888876542 55
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEE
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNF 253 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l 253 (550)
+|.+.. +..................+.|+|++..+
T Consensus 294 i~d~~~---~~~~~~~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 294 YFEITS---EAPFLHYLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp EEEECS---STTCEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred EEEecC---CCcceEeecccccCCcccceEEecccccc
Confidence 654432 21000011122222335667899998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00076 Score=66.74 Aligned_cols=181 Identities=11% Similarity=0.122 Sum_probs=96.7
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
|.+||+.+++.... + ......+..++|+|||+.++...... .|.+.|+.+|++...... ...|+..
T Consensus 174 i~iwd~~~~~~~~~-~-------~~h~~~V~~v~~~p~~~~l~s~s~D~----~i~~wd~~~~~~~~~~~~-h~~~v~~- 239 (410)
T 1vyh_C 174 IKLWDFQGFECIRT-M-------HGHDHNVSSVSIMPNGDHIVSASRDK----TIKMWEVQTGYCVKTFTG-HREWVRM- 239 (410)
T ss_dssp CCEEETTSSCEEEC-C-------CCCSSCEEEEEECSSSSEEEEEETTS----EEEEEETTTCCEEEEEEC-CSSCEEE-
T ss_pred EEEEeCCCCceeEE-E-------cCCCCCEEEEEEeCCCCEEEEEeCCC----eEEEEECCCCcEEEEEeC-CCccEEE-
Confidence 46788887764321 1 23345688899999999887665332 377788888876443321 1122221
Q ss_pred CccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecC-------------------
Q 008873 141 DCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEAS------------------- 199 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg------------------- 199 (550)
. .+++++ +++....+|. |.+++..+++. ..+......+... .|+|++
T Consensus 240 --~-------~~~~~g~~l~s~s~D~~--v~vwd~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 240 --V-------RPNQDGTLIASCSNDQT--VRVWVVATKECKAELREHRHVVECI-SWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp --E-------EECTTSSEEEEEETTSC--EEEEETTTCCEEEEECCCSSCEEEE-EECCSCGGGGGGGCCSCC-------
T ss_pred --E-------EECCCCCEEEEEcCCCe--EEEEECCCCceeeEecCCCceEEEE-EEcCcccccchhhhccccccccCCC
Confidence 1 123443 5554444453 55556555432 3343333334444 377753
Q ss_pred CEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeE
Q 008873 200 GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVL 278 (550)
Q Consensus 200 ~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~ 278 (550)
..+++++..++ .|...++. .+. ....+.. ......+.|+|+|++|+-...+ ..+.+.++.+++.+.
T Consensus 308 g~~l~sgs~D~----~i~iwd~~-~~~----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D----~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 308 GPFLLSGSRDK----TIKMWDVS-TGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADD----KTLRVWDYKNKRCMK 374 (410)
T ss_dssp CCEEEEEETTS----EEEEEETT-TTE----EEEEEECCSSCEEEEEECSSSSCEEEEETT----TEEEEECCTTSCCCE
T ss_pred CCEEEEEeCCC----eEEEEECC-CCc----eEEEEECCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCceEE
Confidence 12444555443 34444652 221 2223332 2236677899999887643322 478888876665444
Q ss_pred ec
Q 008873 279 PL 280 (550)
Q Consensus 279 ~l 280 (550)
.+
T Consensus 375 ~~ 376 (410)
T 1vyh_C 375 TL 376 (410)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00029 Score=80.48 Aligned_cols=201 Identities=15% Similarity=0.093 Sum_probs=113.8
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++||-...+ + .|.+||+.+++.... + .
T Consensus 619 ~~~~~s~~~~~l~s~~~d-~-----------------------------------~i~vw~~~~~~~~~~-~-------~ 654 (1249)
T 3sfz_A 619 YHACFSQDGQRIASCGAD-K-----------------------------------TLQVFKAETGEKLLD-I-------K 654 (1249)
T ss_dssp EEEEECTTSSEEEEEETT-S-----------------------------------CEEEEETTTCCEEEE-E-------C
T ss_pred EEEEECCCCCEEEEEeCC-C-----------------------------------eEEEEECCCCCEEEE-e-------c
Confidence 567899999999765322 1 367899998875432 2 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 163 (550)
.....+..++|||||++++...... .|.+.++.+|+.......... .+.. ..+.+ +.+. +++....
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~----~v~vwd~~~~~~~~~~~~~~~-~v~~---~~~~~-----~~~~~~l~sg~~ 721 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADK----KVKIWDSATGKLVHTYDEHSE-QVNC---CHFTN-----KSNHLLLATGSN 721 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTCCEEEEEECCSS-CEEE---EEECS-----SSSCCEEEEEET
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCC----eEEEEECCCCceEEEEcCCCC-cEEE---EEEec-----CCCceEEEEEeC
Confidence 2345678899999999888765332 488888999886544332211 1110 11110 1233 4444434
Q ss_pred CCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-----
Q 008873 164 TGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN----- 237 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~----- 237 (550)
+| .|.+++..+++. ..+......+... .|+|+|+.|+..+.. + ...+| ++. .+. ....+..
T Consensus 722 d~--~v~vwd~~~~~~~~~~~~h~~~v~~~-~~sp~~~~l~s~s~d-g--~v~vw--d~~-~~~----~~~~~~~~~~~~ 788 (1249)
T 3sfz_A 722 DF--FLKLWDLNQKECRNTMFGHTNSVNHC-RFSPDDELLASCSAD-G--TLRLW--DVR-SAN----ERKSINVKRFFL 788 (1249)
T ss_dssp TS--CEEEEETTSSSEEEEECCCSSCEEEE-EECSSTTEEEEEESS-S--EEEEE--EGG-GTE----EEEEEECCCCC-
T ss_pred CC--eEEEEECCCcchhheecCCCCCEEEE-EEecCCCEEEEEECC-C--eEEEE--eCC-CCc----ccceeccccccc
Confidence 44 466667666543 3344334345554 499999877665543 2 24444 431 111 0011100
Q ss_pred ---------CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 238 ---------GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 238 ---------~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
......+.|+|||+.++.... ..+.++++.+++....+
T Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAK-----NKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp -------CCCCCBCCCCBCTTSSEEEEEET-----TEEEEEETTTCCEEEEE
T ss_pred ccCCccccccceEEEEEECCCCCEEEEEcC-----CcEEEEEecCCCceeEE
Confidence 012334578999998877642 37888888877755444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00052 Score=67.59 Aligned_cols=118 Identities=11% Similarity=0.164 Sum_probs=69.4
Q ss_pred CCCcEEEEEccCCccEEEEEeCCCceeecccc----------cCeEEEE--EEeEeecCCEEEEEEcCCC-----CceeE
Q 008873 153 YSGGFIWASEKTGFRHLYLHDINGTCLGPITE----------GDWMVEQ--IVGVNEASGQVYFTGTLDG-----PLESH 215 (550)
Q Consensus 153 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~----------~~~~~~~--~~~~s~dg~~l~f~~~~~~-----~~~~~ 215 (550)
+++++++.+. .| .++++|..++..+.+.. ..+.... ...+++||+++|+...... .....
T Consensus 275 dg~~~~~~s~-~g--~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~ 351 (426)
T 3c75_H 275 RSGRLVWPTY-TG--KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF 351 (426)
T ss_dssp TTCEEEEEBT-TS--EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE
T ss_pred CCCEEEEEeC-CC--cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE
Confidence 3444666654 33 79999976654322210 0121111 1358999999998753211 02357
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
|..+|+. ... ....+.-+..-..+.++|||+.++|+.... ...+.++|+.+++.++.+
T Consensus 352 VsVID~~-T~k----vv~~I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 352 VVVLNAE-TGE----RINKIELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETT-TCC----EEEEEEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEEEE
T ss_pred EEEEECC-CCe----EEEEEECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEEEe
Confidence 9999983 222 344554333355668999999444554422 248999999999877665
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00033 Score=69.89 Aligned_cols=114 Identities=10% Similarity=-0.000 Sum_probs=59.7
Q ss_pred cCCCc-EEEEEccCCccEEEEEeCC-Ccee-e-------cccccCeEEEEEEeEeecC-CEEEEEEcCCCCceeEEEEEE
Q 008873 152 KYSGG-FIWASEKTGFRHLYLHDIN-GTCL-G-------PITEGDWMVEQIVGVNEAS-GQVYFTGTLDGPLESHLYCAK 220 (550)
Q Consensus 152 ~~~~~-~~~~s~~~g~~~l~~~~~~-~~~~-~-------~lT~~~~~~~~~~~~s~dg-~~l~f~~~~~~~~~~~l~~v~ 220 (550)
|++++ +++.. .+ ..|.++++. +++. + .+......+.... |+|++ +.|+ ++..++. ..+| +
T Consensus 185 ~~~~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~p~~~~~l~-s~~~dg~--i~iw--d 255 (447)
T 3dw8_B 185 INSDYETYLSA-DD--LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAE-FHPNSCNTFV-YSSSKGT--IRLC--D 255 (447)
T ss_dssp ECTTSSEEEEE-CS--SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEE-ECSSCTTEEE-EEETTSC--EEEE--E
T ss_pred EcCCCCEEEEe-CC--CeEEEEECCCCCceeeeeecccccccccCcceEEEE-ECCCCCcEEE-EEeCCCe--EEEE--E
Confidence 45554 44444 33 456777766 2222 2 1333343455554 99998 5554 4444432 4555 5
Q ss_pred eCCCCCCCCCCCeeeCCCC-------------ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC-CceeEec
Q 008873 221 LYPDWNHTLEAPVKLTNGK-------------GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD-GSLVLPL 280 (550)
Q Consensus 221 ~~~~g~~~~~~~~~lt~~~-------------~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~-g~~~~~l 280 (550)
+. .+.........+.... ....+.|+|+|++|+.. +. ..+.+.++.+ ++.+..+
T Consensus 256 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~----~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 256 MR-ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR-DY----LSVKVWDLNMENRPVETY 323 (447)
T ss_dssp TT-TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE-ES----SEEEEEETTCCSSCSCCE
T ss_pred Cc-CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe-eC----CeEEEEeCCCCcccccee
Confidence 52 2210000134444332 46777999999987643 22 5889999875 5544333
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0038 Score=58.67 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=93.7
Q ss_pred EEEEEECCCCceEEE-EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|++||+++++..++ .. ......+..++|+|||+.++...... .|.+.+.++++..............
T Consensus 46 tV~iWd~~tg~~~~~~~~-------~~~~~~V~~v~~~~~~~~l~sgs~Dg----~v~iw~~~~~~~~~~~~~h~~~~~~ 114 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQM-------EQPGEYISSVAWIKEGNYLAVGTSSA----EVQLWDVQQQKRLRNMTSHSARVGS 114 (318)
T ss_dssp EEEEEETTTCCEEEEEEC-------CSTTCCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECCSSCEEE
T ss_pred EEEEEECCCCCEEEEEEe-------cCCCCeEEEEEECCCCCEEEEEECCC----cEEEeecCCceeEEEecCccceEEE
Confidence 368899999987543 33 22345688999999999887765332 3677788888764433221111100
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
+ ...+ .++......+...++...........+......+... .++++++.|+..+. ++. ..||
T Consensus 115 ----~-------~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~s~~~-d~~--i~iw- 177 (318)
T 4ggc_A 115 ----L-------SWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL-RWAPDGRHLASGGN-DNL--VNVW- 177 (318)
T ss_dssp ----E-------EEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE-EECTTSSEEEEEET-TSC--EEEE-
T ss_pred ----e-------ecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEE-EEcCCCCEEEEEec-Ccc--eeEE-
Confidence 0 0112 2343333334332332222222222333222223333 47888876664443 332 4555
Q ss_pred EEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 219 AKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
++. .+............. .......+++++..++.+.+.. ....+.+.+...+..
T Consensus 178 -d~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 178 -PSA-PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-SDRHIRIWNVCSGAC 233 (318)
T ss_dssp -ESS-CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT-TTCEEEEEETTTCCE
T ss_pred -ECC-CCcccccceeeecccCCceEEEEecCCCCcEEEEEecC-CCCEEEEEecccccc
Confidence 542 221111111222222 2356667888877776655443 334677777766554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.04 E-value=8.3e-05 Score=71.32 Aligned_cols=185 Identities=6% Similarity=-0.054 Sum_probs=96.7
Q ss_pred EEEEEEC-CCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC---------CceEEEE
Q 008873 60 RLGVVSA-AGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT---------GQRKVIL 129 (550)
Q Consensus 60 ~l~~~d~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~---------g~~~~l~ 129 (550)
.|.+||+ ++++...+.. ......+..++|+| ++.++...... .|.+.++.+ ++.....
T Consensus 80 ~i~~wd~~~~~~~~~~~~-------~~~~~~v~~l~~~~-~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~ 147 (342)
T 1yfq_A 80 EILKVDLIGSPSFQALTN-------NEANLGICRICKYG-DDKLIAASWDG----LIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp CEEEECSSSSSSEEECBS-------CCCCSCEEEEEEET-TTEEEEEETTS----EEEEECHHHHTTBCEEEEESCSSSS
T ss_pred eEEEEEeccCCceEeccc-------cCCCCceEEEEeCC-CCEEEEEcCCC----eEEEEcccccccccccccCCeeeEE
Confidence 3688899 8887755421 00355678899999 87777664332 355555554 2211100
Q ss_pred EeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC-cee--e-cccccCeEEEEEEeEee-cCCEEEE
Q 008873 130 VEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TCL--G-PITEGDWMVEQIVGVNE-ASGQVYF 204 (550)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~-~~~--~-~lT~~~~~~~~~~~~s~-dg~~l~f 204 (550)
..... + . - ..+++++++ ....+| .|.++++.+ +.. . ........+..+ .|+| +++.++.
T Consensus 148 ~~~~~--v-----~-~----~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~i~~i-~~~~~~~~~l~~ 211 (342)
T 1yfq_A 148 KVKNK--I-----F-T----MDTNSSRLI-VGMNNS--QVQWFRLPLCEDDNGTIEESGLKYQIRDV-ALLPKEQEGYAC 211 (342)
T ss_dssp SSCCC--E-----E-E----EEECSSEEE-EEESTT--EEEEEESSCCTTCCCEEEECSCSSCEEEE-EECSGGGCEEEE
T ss_pred eeCCc--e-----E-E----EEecCCcEE-EEeCCC--eEEEEECCccccccceeeecCCCCceeEE-EECCCCCCEEEE
Confidence 00000 0 0 0 024555533 333333 577777765 321 1 222223345554 4999 9887766
Q ss_pred EEcCCCCceeEEEEEEeCCCCCC-CCCCCeeeCCC----------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 205 TGTLDGPLESHLYCAKLYPDWNH-TLEAPVKLTNG----------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 205 ~~~~~~~~~~~l~~v~~~~~g~~-~~~~~~~lt~~----------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
.+. ++ ...||.++. .+.. .......+... .....+.|+|++++|+....+ ..+.+.++.+
T Consensus 212 ~~~-dg--~i~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~ 282 (342)
T 1yfq_A 212 SSI-DG--RVAVEFFDD--QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD----GIISCWNLQT 282 (342)
T ss_dssp EET-TS--EEEEEECCT--TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT----SCEEEEETTT
T ss_pred Eec-CC--cEEEEEEcC--CCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC----ceEEEEcCcc
Confidence 554 33 355654443 2100 00122333321 146667899999877654333 3788999988
Q ss_pred CceeEecc
Q 008873 274 GSLVLPLY 281 (550)
Q Consensus 274 g~~~~~l~ 281 (550)
++.+..+.
T Consensus 283 ~~~~~~~~ 290 (342)
T 1yfq_A 283 RKKIKNFA 290 (342)
T ss_dssp TEEEEECC
T ss_pred HhHhhhhh
Confidence 87655543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.001 Score=64.14 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=69.6
Q ss_pred EEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEE
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHL 169 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l 169 (550)
..++..+.+..|++.. ... ..|+++++++...+.+....-. .|. ....++ ++.+|.++......|
T Consensus 119 ~glavd~~~g~ly~~d-~~~--~~I~~~~~dG~~~~~l~~~~l~---------~P~--~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTD-SGT--SRIEVANLDGAHRKVLLWQSLE---------KPR--AIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp CEEEEETTTTEEEEEE-TTT--TEEEEEETTSCSCEEEECTTCS---------CEE--EEEEETTTTEEEEEECSSSCEE
T ss_pred cEEEEecCCCeEEEEc-CCC--CeEEEEcCCCCceEEEEeCCCC---------Ccc--eEEEecCcCeEEEeccCCCCEE
Confidence 3456777666655543 222 2589999988765555431100 000 001233 457888876555789
Q ss_pred EEEeCCCceeecccccCeE-EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 170 YLHDINGTCLGPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 170 ~~~~~~~~~~~~lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
++++++|...+.+...... ..++ .++++++.||++-... ..|+++++ +|.
T Consensus 185 ~r~~~dG~~~~~~~~~~~~~PnGl-a~d~~~~~lY~aD~~~----~~I~~~~~--dG~ 235 (349)
T 3v64_C 185 EASSMDGSGRRIIADTHLFWPNGL-TIDYAGRRMYWVDAKH----HVIERANL--DGS 235 (349)
T ss_dssp EEEETTSCSCEESCCSSCSCEEEE-EEETTTTEEEEEETTT----TEEEEEET--TSC
T ss_pred EEEeCCCCCcEEEEECCCCCcceE-EEeCCCCEEEEEECCC----CEEEEEeC--CCC
Confidence 9999998766655432221 2344 4898899999986543 47889998 554
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.9e-05 Score=74.93 Aligned_cols=185 Identities=10% Similarity=-0.032 Sum_probs=87.1
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCc-eE-EEEcccCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGP-VS-WMDLQCGGTD 82 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~-~l~~~~~~~~ 82 (550)
.++.|||||++|+....+. .|.+||+++++ .. ...+
T Consensus 59 ~~~~~s~~~~~l~s~s~d~------------------------------------~v~vwd~~~~~~~~~~~~~------ 96 (377)
T 3dwl_C 59 TCVDWAPKSNRIVTCSQDR------------------------------------NAYVYEKRPDGTWKQTLVL------ 96 (377)
T ss_dssp EEEEECTTTCCEEEEETTS------------------------------------SEEEC------CCCCEEEC------
T ss_pred EEEEEeCCCCEEEEEeCCC------------------------------------eEEEEEcCCCCceeeeeEe------
Confidence 5678999998887654331 25778888776 11 1112
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc----eEEEEEeecCceeeccCccccCCCCCccCCCc-E
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ----RKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-F 157 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 157 (550)
......+..++|+|||+.++...... .|.+.++++++ .+.+.. .....+.. + .+++++ +
T Consensus 97 -~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~---~-------~~~~~~~~ 160 (377)
T 3dwl_C 97 -LRLNRAATFVRWSPNEDKFAVGSGAR----VISVCYFEQENDWWVSKHLKR-PLRSTILS---L-------DWHPNNVL 160 (377)
T ss_dssp -CCCSSCEEEEECCTTSSCCEEEESSS----CEEECCC-----CCCCEEECS-SCCSCEEE---E-------EECTTSSE
T ss_pred -cccCCceEEEEECCCCCEEEEEecCC----eEEEEEECCcccceeeeEeec-ccCCCeEE---E-------EEcCCCCE
Confidence 23345678899999999877765433 26666777765 233321 01111100 1 234444 5
Q ss_pred EEEEccCCccEEEEEeCC-----------------CceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEE
Q 008873 158 IWASEKTGFRHLYLHDIN-----------------GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAK 220 (550)
Q Consensus 158 ~~~s~~~g~~~l~~~~~~-----------------~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~ 220 (550)
++....+|.-.||-+... +.....+ .....+... .|+|+|+.|+..+.+ + ...|| +
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~-~~sp~~~~l~~~~~d-~--~i~iw--d 233 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV-GFSPSGNALAYAGHD-S--SVTIA--Y 233 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE-EECTTSSCEEEEETT-T--EEC-C--E
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE-EECCCCCEEEEEeCC-C--cEEEE--E
Confidence 555444554444444211 1111222 222234444 499999877766543 2 24455 5
Q ss_pred eCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEE
Q 008873 221 LYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVD 255 (550)
Q Consensus 221 ~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~ 255 (550)
+. .+.........+... .....+.|+||++.|+.
T Consensus 234 ~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 234 PS-APEQPPRALITVKLSQLPLRSLLWANESAIVAA 268 (377)
T ss_dssp EC-STTSCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred CC-CCCCcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence 42 222000002233322 23677789999976643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0016 Score=61.90 Aligned_cols=37 Identities=5% Similarity=-0.099 Sum_probs=23.7
Q ss_pred ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 240 ~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
....+.|+|++++|+....+ ..+.+.++.+++..+.+
T Consensus 308 ~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 308 EVWSVSWNLTGTILSSAGDD----GKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CEEEEEECSSSCCEEEEETT----SCEEEEEECTTSCEEEE
T ss_pred cEEEEEEcCCCCEEEEecCC----CcEEEEecCcCcchhhe
Confidence 36677899999876544333 35777777666654433
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00066 Score=74.46 Aligned_cols=195 Identities=9% Similarity=0.091 Sum_probs=109.4
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|||||++||-...+ ..|.+|+..+++.... +
T Consensus 20 V~~lafspdg~~lAsgs~D------------------------------------g~I~lw~~~~~~~~~~-~------- 55 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVT------------------------------------GEVHIYGQQQVEVVIK-L------- 55 (902)
T ss_dssp EEEEEEETTTTEEEEEETT------------------------------------SEEEEECSTTCEEEEE-C-------
T ss_pred cEEEEECCCCCEEEEEeCC------------------------------------CEEEEEeCCCcEEEEE-c-------
Confidence 3678999999999875433 1357778877654322 2
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEc
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASE 162 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 162 (550)
.....+..++|+| |++|+..... ..|.+-++++++.......... +. .+ .+++++ +++...
T Consensus 56 -~~~~~V~~l~fsp-g~~L~S~s~D----~~v~lWd~~~~~~~~~~~~~~~--V~---~v-------~~sp~g~~l~sgs 117 (902)
T 2oaj_A 56 -EDRSAIKEMRFVK-GIYLVVINAK----DTVYVLSLYSQKVLTTVFVPGK--IT---SI-------DTDASLDWMLIGL 117 (902)
T ss_dssp -SSCCCEEEEEEET-TTEEEEEETT----CEEEEEETTTCSEEEEEECSSC--EE---EE-------ECCTTCSEEEEEE
T ss_pred -CCCCCEEEEEEcC-CCEEEEEECc----CeEEEEECCCCcEEEEEcCCCC--EE---EE-------EECCCCCEEEEEc
Confidence 1234678899999 8866655432 2377778888876433322211 11 01 234444 555555
Q ss_pred cCCccEEEEEeCCCceeec------------ccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCC
Q 008873 163 KTGFRHLYLHDINGTCLGP------------ITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE 230 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~------------lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~ 230 (550)
.+| .|.++|+++++... +....-.+... .|+|++..+++++..++ .. || ++. .+.
T Consensus 118 ~dg--~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl-~~sp~~~~~l~~g~~dg--~v-lW--d~~-~~~---- 184 (902)
T 2oaj_A 118 QNG--SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI-QWNPRDIGTVLISYEYV--TL-TY--SLV-ENE---- 184 (902)
T ss_dssp TTS--CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE-EEETTEEEEEEEECSSC--EE-EE--ETT-TTE----
T ss_pred CCC--cEEEEECCCCccccceeccccccccccccCCCCeEEE-EEccCCCCEEEEEeCCC--cE-EE--ECC-CCc----
Confidence 555 46667776665321 11111223444 48887655555666554 23 44 552 111
Q ss_pred CCeeeCCC-------------------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCcee
Q 008873 231 APVKLTNG-------------------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLV 277 (550)
Q Consensus 231 ~~~~lt~~-------------------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~ 277 (550)
....+... .....+.|+|||++|+-...+ ..+.+.|+.+++.+
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D----g~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED----NSLVFWDANSGHMI 246 (902)
T ss_dssp EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT----CCEEEEETTTCCEE
T ss_pred eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCcEE
Confidence 11122111 236777999999987655433 36888898888754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00072 Score=70.52 Aligned_cols=164 Identities=9% Similarity=0.006 Sum_probs=89.3
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEEEccC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ 164 (550)
...+..++|+|||+.++...........|+..+ +++....... ....+.. + .+++++ +++....+
T Consensus 116 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-~~~~v~~---~-------~~~~~~~~~l~~~~~d 182 (615)
T 1pgu_A 116 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG-HSQRINA---C-------HLKQSRPMRSMTVGDD 182 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS-CSSCEEE---E-------EECSSSSCEEEEEETT
T ss_pred cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec-CCccEEE---E-------EECCCCCcEEEEEeCC
Confidence 456788999999998887765433334576666 4443221111 1111110 1 123333 44444334
Q ss_pred CccEEEEEeCCCceee-cccccCe---EEEEEEeEeec-CCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee----
Q 008873 165 GFRHLYLHDINGTCLG-PITEGDW---MVEQIVGVNEA-SGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL---- 235 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~-~lT~~~~---~~~~~~~~s~d-g~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l---- 235 (550)
| .|.+++..+++.. .+....- .+... .|+|+ ++.|+..+.. + .|+..++. .+. ....+
T Consensus 183 ~--~v~vwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~d-g----~i~vwd~~-~~~----~~~~~~~~~ 249 (615)
T 1pgu_A 183 G--SVVFYQGPPFKFSASDRTHHKQGSFVRDV-EFSPDSGEFVITVGSD-R----KISCFDGK-SGE----FLKYIEDDQ 249 (615)
T ss_dssp T--EEEEEETTTBEEEEEECSSSCTTCCEEEE-EECSTTCCEEEEEETT-C----CEEEEETT-TCC----EEEECCBTT
T ss_pred C--cEEEEeCCCcceeeeecccCCCCceEEEE-EECCCCCCEEEEEeCC-C----eEEEEECC-CCC----EeEEecccc
Confidence 4 5667776665433 3333333 35555 49999 8776655543 2 34444652 232 23334
Q ss_pred -CCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 236 -TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 236 -t~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
........+.|+ +++.++....+ ..+.+.++.+++....+.
T Consensus 250 ~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 250 EPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp BCCCSCEEEEEES-SSSEEEEEETT----SEEEEEETTTTEEEEEEE
T ss_pred cccCCceEEEEEc-CCCEEEEEcCC----CcEEEEECCCCcEEEEEc
Confidence 222346777899 88877655433 478888988777655543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0019 Score=62.16 Aligned_cols=170 Identities=12% Similarity=0.016 Sum_probs=94.3
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g 165 (550)
...+..++|+|||++++...... .|.+.++.+++.......... .+.. + .|++++ +++....+|
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~h~~-~v~~---~-------~~~~~~~~l~s~~~dg 96 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDS----SASVWYSLNGERLGTLDGHTG-TIWS---I-------DVDCFTKYCVTGSADY 96 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSS----CEEEEETTTCCEEEEECCCSS-CEEE---E-------EECTTSSEEEEEETTT
T ss_pred eceEEEEEEcCCCCEEEEEeCCC----EEEEEeCCCchhhhhhhhcCC-cEEE---E-------EEcCCCCEEEEEeCCC
Confidence 45678899999999887765332 377778888876543321111 1100 1 234443 555544444
Q ss_pred ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCC--CCceeEEEEEEeCCCCCCC------CCCCeeeCC
Q 008873 166 FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD--GPLESHLYCAKLYPDWNHT------LEAPVKLTN 237 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~--~~~~~~l~~v~~~~~g~~~------~~~~~~lt~ 237 (550)
.|.++++.+++..........+... .|+++++.|+...... ......+|.+.. ..... ......+..
T Consensus 97 --~i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 97 --SIKLWDVSNGQCVATWKSPVPVKRV-EFSPCGNYFLAILDNVMKNPGSINIYEIER--DSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp --EEEEEETTTCCEEEEEECSSCEEEE-EECTTSSEEEEEECCBTTBCCEEEEEEEEE--CTTTCCEEEECSSCSEEEEC
T ss_pred --eEEEEECCCCcEEEEeecCCCeEEE-EEccCCCEEEEecCCccCCCCEEEEEEecC--CccceeecccccceeeeccC
Confidence 5777787665543332233345554 4999999888776641 112355555543 21100 001122222
Q ss_pred CC---ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC-CceeEec
Q 008873 238 GK---GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD-GSLVLPL 280 (550)
Q Consensus 238 ~~---~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~-g~~~~~l 280 (550)
.. ....+.|+|+++.++....+ ..+.++++.+ ++....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~ 214 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKGKYIIAGHKD----GKISKYDVSNNYEYVDSI 214 (369)
T ss_dssp CTTCCCEEEEEECGGGCEEEEEETT----SEEEEEETTTTTEEEEEE
T ss_pred CcCccceeEEEEcCCCCEEEEEcCC----CEEEEEECCCCcEeEEEE
Confidence 11 45667899999987665433 4789999876 4433333
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00047 Score=68.26 Aligned_cols=180 Identities=9% Similarity=0.086 Sum_probs=95.5
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceeec
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNL 139 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~ 139 (550)
|.+||+++++.... + ......+..++|+|||++++....... |.+.++.++++..... ......
T Consensus 132 i~vwd~~~~~~~~~-l-------~~h~~~V~~v~~~~~~~~l~sgs~D~~----i~iwd~~~~~~~~~~~~h~~~V~--- 196 (410)
T 1vyh_C 132 IKVWDYETGDFERT-L-------KGHTDSVQDISFDHSGKLLASCSADMT----IKLWDFQGFECIRTMHGHDHNVS--- 196 (410)
T ss_dssp EEEEETTTCCCCEE-E-------CCCSSCEEEEEECTTSSEEEEEETTSC----CCEEETTSSCEEECCCCCSSCEE---
T ss_pred EEEEECCCCcEEEE-E-------eccCCcEEEEEEcCCCCEEEEEeCCCe----EEEEeCCCCceeEEEcCCCCCEE---
Confidence 67889998865432 1 222446788999999998877654432 5556777776532211 111100
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.. .+++++ +++....+| .|.++|..+++ .+.++...-.+... .++++|+.|+..+. ++. ..+|
T Consensus 197 --~v-------~~~p~~~~l~s~s~D~--~i~~wd~~~~~~~~~~~~h~~~v~~~-~~~~~g~~l~s~s~-D~~--v~vw 261 (410)
T 1vyh_C 197 --SV-------SIMPNGDHIVSASRDK--TIKMWEVQTGYCVKTFTGHREWVRMV-RPNQDGTLIASCSN-DQT--VRVW 261 (410)
T ss_dssp --EE-------EECSSSSEEEEEETTS--EEEEEETTTCCEEEEEECCSSCEEEE-EECTTSSEEEEEET-TSC--EEEE
T ss_pred --EE-------EEeCCCCEEEEEeCCC--eEEEEECCCCcEEEEEeCCCccEEEE-EECCCCCEEEEEcC-CCe--EEEE
Confidence 01 123433 454444444 56677766554 33444433334444 48889876655444 332 4555
Q ss_pred EEEeCCCCCCCCCCCeeeCCC-CceEEEEECCC--------------------CCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 218 CAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHN--------------------MRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~d--------------------g~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
++. .+. ....+... .....+.|+|+ |.+++ +.+. -..+.+.|+.+++.
T Consensus 262 --d~~-~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-sgs~---D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 262 --VVA-TKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL-SGSR---DKTIKMWDVSTGMC 330 (410)
T ss_dssp --ETT-TCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE-EEET---TSEEEEEETTTTEE
T ss_pred --ECC-CCc----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE-EEeC---CCeEEEEECCCCce
Confidence 541 121 12233322 23556678886 33443 3332 24788889888876
Q ss_pred eEecc
Q 008873 277 VLPLY 281 (550)
Q Consensus 277 ~~~l~ 281 (550)
+..+.
T Consensus 331 ~~~~~ 335 (410)
T 1vyh_C 331 LMTLV 335 (410)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0023 Score=61.84 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=90.8
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceeeccCccccCCCCCccCCC-cEEEEEccC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 164 (550)
...+...+|+||++.++...... .|.+.|+++++....... ...... . .+.+ +++ .+++....+
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s~D~----~v~lwd~~~~~~~~~~~~h~~~v~~-~--~~~~-------~~~g~~l~sgs~D 219 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTASGDG----TCALWDVESGQLLQSFHGHGADVLC-L--DLAP-------SETGNTFVSGGCD 219 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEETTS----EEEEEETTTCCEEEEEECCSSCEEE-E--EECC-------CSSCCEEEEEETT
T ss_pred CCcEEEEEEeCCCCEEEEEeCCC----cEEEEeCCCCeEEEEEcCCCCCeEE-E--EEEe-------CCCCCEEEEEeCC
Confidence 34677889999999887665432 377778888886543332 111110 0 0111 222 355554444
Q ss_pred CccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC---Cc
Q 008873 165 GFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG---KG 240 (550)
Q Consensus 165 g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~---~~ 240 (550)
| .|.++|+.+++. +.+......+.... |+|+++.|+..+. ++. ..+| ++. .+. ....+... .+
T Consensus 220 g--~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~-D~~--v~lw--d~~-~~~----~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 220 K--KAMVWDMRSGQCVQAFETHESDVNSVR-YYPSGDAFASGSD-DAT--CRLY--DLR-ADR----EVAIYSKESIIFG 286 (354)
T ss_dssp S--CEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSEEEEEET-TSC--EEEE--ETT-TTE----EEEEECCTTCCSC
T ss_pred C--eEEEEECCCCcEEEEecCCCCCeEEEE-EeCCCCEEEEEeC-CCe--EEEE--ECC-CCc----EEEEEcCCCcccc
Confidence 4 466777665543 33443344455554 8999987665444 332 4555 552 111 12222221 13
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
...+.|+|+|+.++....+ ..+.+.++.+++.+..+.
T Consensus 287 ~~~~~~s~~g~~l~~g~~d----~~i~vwd~~~~~~~~~l~ 323 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYND----YTINVWDVLKGSRVSILF 323 (354)
T ss_dssp EEEEEECTTSSEEEEEETT----SCEEEEETTTCSEEEEEC
T ss_pred eeEEEEeCCCCEEEEEECC----CcEEEEECCCCceEEEEE
Confidence 5667899999977654433 368888887777554443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0099 Score=55.92 Aligned_cols=180 Identities=11% Similarity=0.066 Sum_probs=92.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+++|.+++....+.. ......+++++||++++ . +...+...|+.++..+|+.+.+.........+.
T Consensus 54 ~I~~~d~~g~~~~~~~~----------~~~p~gia~~~dG~l~v-a-d~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g 121 (306)
T 2p4o_A 54 EIVSITPDGNQQIHATV----------EGKVSGLAFTSNGDLVA-T-GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNG 121 (306)
T ss_dssp EEEEECTTCCEEEEEEC----------SSEEEEEEECTTSCEEE-E-EECTTSCEEEEEECTTSCEEEEEECTTCSCEEE
T ss_pred eEEEECCCCceEEEEeC----------CCCceeEEEcCCCcEEE-E-eccCCcceEEEEcCCCCeEEEEEeCCCccccCc
Confidence 46777777654333322 23456688999999433 2 222222358899999998876655322111110
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeec------cc----ccCeEEEEEEeEeecCCEEEEEEcCC
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGP------IT----EGDWMVEQIVGVNEASGQVYFTGTLD 209 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~------lT----~~~~~~~~~~~~s~dg~~l~f~~~~~ 209 (550)
.. .+ .++.+++++. +...||+++..+++.+. ++ .+... .+...++|++.||++-...
T Consensus 122 -~~--------~~-~~~~~~v~d~-~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~--~pngis~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 122 -IT--------PL-SDTQYLTADS-YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP--AANGLKRFGNFLYVSNTEK 188 (306)
T ss_dssp -EE--------ES-SSSEEEEEET-TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC--SEEEEEEETTEEEEEETTT
T ss_pred -cc--------cc-CCCcEEEEEC-CCCeEEEEeCCCCcEeEEEECCccccccccCCCC--cCCCcCcCCCEEEEEeCCC
Confidence 00 11 2345566654 23489999987642211 11 11111 1123488999999886654
Q ss_pred CCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 210 GPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 210 ~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
..|+++++..++. ....+.+.....-..+.++++|+.+ +.... ...|.+++. +|+
T Consensus 189 ----~~I~~~~~~~~g~--~~~~~~~~~~~~P~gi~vd~dG~l~--va~~~--~~~V~~~~~-~G~ 243 (306)
T 2p4o_A 189 ----MLLLRIPVDSTDK--PGEPEIFVEQTNIDDFAFDVEGNLY--GATHI--YNSVVRIAP-DRS 243 (306)
T ss_dssp ----TEEEEEEBCTTSC--BCCCEEEEESCCCSSEEEBTTCCEE--EECBT--TCCEEEECT-TCC
T ss_pred ----CEEEEEEeCCCCC--CCccEEEeccCCCCCeEECCCCCEE--EEeCC--CCeEEEECC-CCC
Confidence 4688888832122 1112222211112334677888543 32221 135777775 454
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00077 Score=66.02 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=68.7
Q ss_pred EEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEE
Q 008873 92 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLY 170 (550)
Q Consensus 92 ~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~ 170 (550)
.+++.+.+..|++.... . ..|+++++++...+.+....-. . |. ....++ ++.+|+++......|+
T Consensus 163 glavd~~~g~lY~~d~~-~--~~I~~~~~dg~~~~~l~~~~l~-~--------P~--giavdp~~g~ly~td~~~~~~I~ 228 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSG-T--SRIEVANLDGAHRKVLLWQSLE-K--------PR--AIALHPMEGTIYWTDWGNTPRIE 228 (386)
T ss_dssp CEEEETTTTEEEEEETT-T--TEEEECBTTSCSCEEEECSSCS-C--------EE--EEEEETTTTEEEEEECSSSCEEE
T ss_pred EEEEEeCCCeEEEEcCC-C--CeEEEEeCCCCceEEeecCCCC-C--------Cc--EEEEEcCCCeEEEeccCCCCEEE
Confidence 35667666666554322 2 2588889887765555432100 0 00 001233 4578888775557899
Q ss_pred EEeCCCceeecccccCeE-EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 171 LHDINGTCLGPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 171 ~~~~~~~~~~~lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
+++++|...+.+...... ...+ .++++++.||++-... ..|+++++ +|.
T Consensus 229 r~~~dG~~~~~~~~~~~~~PnGl-avd~~~~~lY~aD~~~----~~I~~~d~--dG~ 278 (386)
T 3v65_B 229 ASSMDGSGRRIIADTHLFWPNGL-TIDYAGRRMYWVDAKH----HVIERANL--DGS 278 (386)
T ss_dssp EEETTSCSCEEEECSSCSCEEEE-EEEGGGTEEEEEETTT----TEEEEECT--TSC
T ss_pred EEeCCCCCcEEEEECCCCCeeeE-EEeCCCCEEEEEECCC----CEEEEEeC--CCC
Confidence 999998766555433221 2344 4898999999986543 47888888 554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00047 Score=66.32 Aligned_cols=181 Identities=10% Similarity=-0.004 Sum_probs=96.1
Q ss_pred EEEEEECCCCc--eEEEEcccCCCCCCCCCceeEEE------EECCCCeEEEEEEecCCCceEEEEEECCCCc-e-EEEE
Q 008873 60 RLGVVSAAGGP--VSWMDLQCGGTDQNYDEEYLARV------NWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-R-KVIL 129 (550)
Q Consensus 60 ~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~------~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~-~-~~l~ 129 (550)
.|.+||+.+++ ...+ ......+..+ +|+||++.++...... .|.+.++.+++ . ..+.
T Consensus 91 ~i~iwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~----~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSV---------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG----TVKVWDPRQKDDPVANME 157 (357)
T ss_dssp CEEEECTTSCSSCSEEE---------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTS----CEEEECTTSCSSCSEEEC
T ss_pred eEEEEeCCCCCccEEEE---------EecccceEEEeeccccccCCCccEEEEEeCCC----eEEEEeCCCCCCcceecc
Confidence 36778888775 2333 1223345556 4689999887765433 37777888776 2 3322
Q ss_pred EeecC--ceeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEee---cCCEEE
Q 008873 130 VEELD--SWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE---ASGQVY 203 (550)
Q Consensus 130 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~---dg~~l~ 203 (550)
..... ..+.. -.+.+ .+++++ +++....+| .|.+++..+++..........+.... |+| +++.|+
T Consensus 158 ~~~~~~~~~v~~-~~~~~-----~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~l~ 228 (357)
T 3i2n_A 158 PVQGENKRDCWT-VAFGN-----AYNQEERVVCAGYDNG--DIKLFDLRNMALRWETNIKNGVCSLE-FDRKDISMNKLV 228 (357)
T ss_dssp CCTTSCCCCEEE-EEEEC-----CCC-CCCEEEEEETTS--EEEEEETTTTEEEEEEECSSCEEEEE-ESCSSSSCCEEE
T ss_pred ccCCCCCCceEE-EEEEe-----ccCCCCCEEEEEccCC--eEEEEECccCceeeecCCCCceEEEE-cCCCCCCCCEEE
Confidence 21110 00000 00000 134444 554444444 68888888776655544444455554 898 887776
Q ss_pred EEEcCCCCceeEEEEEEeCCCCCCCCCCCeee------CCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 204 FTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL------TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 204 f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l------t~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
..+.. + ...+|.+.. +. ....+ ........+.|+|+++.++++.+.. ..+.+.++.++.
T Consensus 229 ~~~~d-g--~i~i~d~~~---~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~ 293 (357)
T 3i2n_A 229 ATSLE-G--KFHVFDMRT---QH----PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA---GGLHLWKYEYPI 293 (357)
T ss_dssp EEEST-T--EEEEEEEEE---EE----TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT---SEEEEEEEECCS
T ss_pred EECCC-C--eEEEEeCcC---CC----cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC---CcEEEeecCCCc
Confidence 65443 2 355664443 11 11111 2233467788999998555554432 367777776555
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=6.8e-05 Score=85.76 Aligned_cols=175 Identities=9% Similarity=-0.002 Sum_probs=98.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+.+++...+ ......+..+.|+||++++.... . ..|.+.++.+|+.......... .+.
T Consensus 1026 ~i~vwd~~~~~~~~~---------~~~~~~v~~~~~~~~~~l~~~~~-d----g~v~vwd~~~~~~~~~~~~~~~-~v~- 1089 (1249)
T 3sfz_A 1026 VIQVWNWQTGDYVFL---------QAHQETVKDFRLLQDSRLLSWSF-D----GTVKVWNVITGRIERDFTCHQG-TVL- 1089 (1249)
T ss_dssp BEEEEETTTTEEECC---------BCCSSCEEEEEECSSSEEEEEES-S----SEEEEEETTTTCCCEEEECCSS-CCC-
T ss_pred EEEEEECCCCceEEE---------ecCCCcEEEEEEcCCCcEEEEEC-C----CcEEEEECCCCceeEEEcccCC-cEE-
Confidence 367889998876533 23345678899999988654432 2 2488889998886443332111 000
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.. .+++++ +++....+|. |.+++..+++ ...+......+.... |+|||+.|+..+.... ..+|
T Consensus 1090 --~~-------~~s~d~~~l~s~s~d~~--v~iwd~~~~~~~~~l~~h~~~v~~~~-~s~dg~~lat~~~dg~---i~vw 1154 (1249)
T 3sfz_A 1090 --SC-------AISSDATKFSSTSADKT--AKIWSFDLLSPLHELKGHNGCVRCSA-FSLDGILLATGDDNGE---IRIW 1154 (1249)
T ss_dssp --CE-------EECSSSSSCEEECCSSC--CCEECSSSSSCSBCCCCCSSCEEEEE-ECSSSSEEEEEETTSC---CCEE
T ss_pred --EE-------EECCCCCEEEEEcCCCc--EEEEECCCcceeeeeccCCCcEEEEE-ECCCCCEEEEEeCCCE---EEEE
Confidence 01 234444 4444444443 5556655443 334444444455554 9999987776654432 4555
Q ss_pred EEEeCCCCCCCCCCCeee---------C-CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeE
Q 008873 218 CAKLYPDWNHTLEAPVKL---------T-NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVL 278 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~l---------t-~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~ 278 (550)
++. ++. ....+ . .......+.|||||++++.. + ..+.+.++.+++.+.
T Consensus 1155 --d~~-~~~----~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-~-----g~v~vwd~~~g~~~~ 1212 (1249)
T 3sfz_A 1155 --NVS-DGQ----LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-G-----GYLKWWNVATGDSSQ 1212 (1249)
T ss_dssp --ESS-SSC----CCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-S-----SSEEEBCSSSCBCCC
T ss_pred --ECC-CCc----eEEEeccccccccccccCceEEEEEECCCCCEEEEC-C-----CeEEEEECCCCceee
Confidence 542 222 11111 1 12235667999999988654 2 378888887776543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00052 Score=65.97 Aligned_cols=206 Identities=9% Similarity=-0.010 Sum_probs=108.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|||||++++.+...+.. ...|.+||+++++...+...
T Consensus 21 v~~~~~~p~~~~l~~~~s~~~~--------------------------------d~~v~iw~~~~~~~~~~~~~------ 62 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFARG--------------------------------TGVIQLYEIQHGDLKLLREI------ 62 (357)
T ss_dssp EEEEEECTTSSEEEEEEC--CC--------------------------------CEEEEEEEECSSSEEEEEEE------
T ss_pred eEEEEEcCCCceEEEecCccCC--------------------------------CcEEEEEeCCCCcccceeee------
Confidence 3678899999888765432100 13578899998876544221
Q ss_pred CCCCceeEEEEECCC---CeEEEEEEecCCCceEEEEEECCCCc-e-EEEEEeecCceeeccCccccCCCCCccCCCc-E
Q 008873 84 NYDEEYLARVNWMHG---NILTAQVLNRSQTKLKVLKFDIKTGQ-R-KVILVEELDSWVNLHDCFTPLDKGVTKYSGG-F 157 (550)
Q Consensus 84 ~~~~~~~~~~~wspD---g~~i~~~~~r~~~~~~l~~~~~~~g~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 157 (550)
.....+..++|+|+ |+.++...... .|.+.++.+++ . ..+...... +.. ..+.+. ..+++++ +
T Consensus 63 -~~~~~v~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~--v~~---~~~~~~-~~~s~~~~~ 131 (357)
T 3i2n_A 63 -EKAKPIKCGTFGATSLQQRYLATGDFGG----NLHIWNLEAPEMPVYSVKGHKEI--INA---IDGIGG-LGIGEGAPE 131 (357)
T ss_dssp -EESSCEEEEECTTCCTTTCCEEEEETTS----CEEEECTTSCSSCSEEECCCSSC--EEE---EEEESG-GGCC-CCCE
T ss_pred -cccCcEEEEEEcCCCCCCceEEEecCCC----eEEEEeCCCCCccEEEEEecccc--eEE---Eeeccc-cccCCCccE
Confidence 12346788999999 57776664332 37777888776 3 333222221 100 000000 0123443 5
Q ss_pred EEEEccCCccEEEEEeCCCce--eecccc--c--CeEEEEEE---eEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC
Q 008873 158 IWASEKTGFRHLYLHDINGTC--LGPITE--G--DWMVEQIV---GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT 228 (550)
Q Consensus 158 ~~~s~~~g~~~l~~~~~~~~~--~~~lT~--~--~~~~~~~~---~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~ 228 (550)
++....+| .|.+++...++ ...+.. + ...+.... .|+++++.|+..+.. + .|+..++ ...
T Consensus 132 l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-~----~i~i~d~--~~~-- 200 (357)
T 3i2n_A 132 IVTGSRDG--TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-G----DIKLFDL--RNM-- 200 (357)
T ss_dssp EEEEETTS--CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-S----EEEEEET--TTT--
T ss_pred EEEEeCCC--eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-C----eEEEEEC--ccC--
Confidence 55544445 46666765543 223322 1 11233222 277898877665543 2 4555566 222
Q ss_pred CCCCee-eCCCCceEEEEECC---CCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 229 LEAPVK-LTNGKGKHVAVLDH---NMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 229 ~~~~~~-lt~~~~~~~~~~s~---dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+... .........+.|+| +++.++....+ ..+.++++.+++
T Consensus 201 --~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~ 245 (357)
T 3i2n_A 201 --ALRWETNIKNGVCSLEFDRKDISMNKLVATSLE----GKFHVFDMRTQH 245 (357)
T ss_dssp --EEEEEEECSSCEEEEEESCSSSSCCEEEEEEST----TEEEEEEEEEEE
T ss_pred --ceeeecCCCCceEEEEcCCCCCCCCEEEEECCC----CeEEEEeCcCCC
Confidence 1222 22233467779999 88887665433 477888775543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0012 Score=67.98 Aligned_cols=186 Identities=11% Similarity=0.046 Sum_probs=102.2
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC--CCceE-EEEEeecCc
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TGQRK-VILVEELDS 135 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~--~g~~~-~l~~~~~~~ 135 (550)
.|.++|.++++.. .+..+ .....+.+||||++++.. ++. ..|+.+|+. +++.. +|.....+
T Consensus 178 ~V~viD~~t~~v~~~i~~g----------~~p~~v~~SpDGr~lyv~-~~d---g~V~viD~~~~t~~~v~~i~~G~~P- 242 (567)
T 1qks_A 178 QIALIDGSTYEIKTVLDTG----------YAVHISRLSASGRYLFVI-GRD---GKVNMIDLWMKEPTTVAEIKIGSEA- 242 (567)
T ss_dssp EEEEEETTTCCEEEEEECS----------SCEEEEEECTTSCEEEEE-ETT---SEEEEEETTSSSCCEEEEEECCSEE-
T ss_pred eEEEEECCCCeEEEEEeCC----------CCccceEECCCCCEEEEE-cCC---CeEEEEECCCCCCcEeEEEecCCCC-
Confidence 5788999988765 44332 122367899999987655 342 259999996 65532 22111111
Q ss_pred eeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceee-cccccC-------e----EEEEEEeEeecCCEE
Q 008873 136 WVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLG-PITEGD-------W----MVEQIVGVNEASGQV 202 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~-------~----~~~~~~~~s~dg~~l 202 (550)
.+-.+++.. .+|+ ++|+++... ..+.++|..+.+.. .+..+. + .+..+. .|+++..+
T Consensus 243 ---~~ia~s~~~-----~pDGk~l~v~n~~~-~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~-~s~~~~~~ 312 (567)
T 1qks_A 243 ---RSIETSKME-----GWEDKYAIAGAYWP-PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL-ASHYRPEF 312 (567)
T ss_dssp ---EEEEECCST-----TCTTTEEEEEEEET-TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE-ECSSSSEE
T ss_pred ---ceeEEcccc-----CCCCCEEEEEEccC-CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE-EcCCCCEE
Confidence 100111000 0243 666665422 45677787665432 222111 0 223333 67777776
Q ss_pred EEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 203 YFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 203 ~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
++..... -.|+.++.. +... .....+..+...+...|+|||++++...... ..+.++|+++++....+
T Consensus 313 vv~~~~~----g~v~~vd~~-~~~~--~~v~~i~~~~~~~d~~~~pdgr~~~va~~~s---n~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 313 IVNVKET----GKILLVDYT-DLNN--LKTTEISAERFLHDGGLDGSHRYFITAANAR---NKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEEETTT----TEEEEEETT-CSSE--EEEEEEECCSSEEEEEECTTSCEEEEEEGGG---TEEEEEETTTTEEEEEE
T ss_pred EEEecCC----CeEEEEecC-CCcc--ceeeeeeccccccCceECCCCCEEEEEeCCC---CeEEEEECCCCcEEEEE
Confidence 6665333 367788872 1110 0123333344567788999999886665432 37999999988755444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0027 Score=61.53 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=49.9
Q ss_pred eEeecCCEEEEEEcCCC------CceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEE
Q 008873 194 GVNEASGQVYFTGTLDG------PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRIL 267 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~~~------~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~ 267 (550)
.+++|++++|.....++ .....|+.+|+. .+. ....+..+. ...+.+||||++|+ +... ..+.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~-t~~----~v~~i~~~~-p~~ia~spdg~~l~-v~n~----~~v~ 328 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK-TKQ----RVARIPGRD-ALSMTIDQQRNLML-TLDG----GNVN 328 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT-TTE----EEEEEECTT-CCEEEEETTTTEEE-EECS----SCEE
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECC-CCc----EEEEEecCC-eeEEEECCCCCEEE-EeCC----CeEE
Confidence 47899999998754111 012478888983 221 344555544 66778999999664 4332 6899
Q ss_pred EEEcCCC--ceeEec
Q 008873 268 LCSLQDG--SLVLPL 280 (550)
Q Consensus 268 ~~~~~~g--~~~~~l 280 (550)
++|.+++ +.++.+
T Consensus 329 v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 329 VYDISQPEPKLLRTI 343 (361)
T ss_dssp EEECSSSSCEEEEEE
T ss_pred EEECCCCcceeeEEe
Confidence 9999888 655554
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00024 Score=71.87 Aligned_cols=139 Identities=11% Similarity=0.073 Sum_probs=73.9
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-----EEEEEe---e--cCceeeccCccccCCCCCccCCCcEE
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-----KVILVE---E--LDSWVNLHDCFTPLDKGVTKYSGGFI 158 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-----~~l~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (550)
.+..++|||||+.|+...... .|-+.++++++. -.+.+. . ...|+..- +|+||+ +
T Consensus 131 sv~svafSPDG~~LAsgs~DG----tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sV----------awSPdg-L 195 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDG----ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHI----------VWYEDV-L 195 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTS----EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEE----------EEETTE-E
T ss_pred cEEEEEEcCCCCEEEEEcCCC----EEEEEECCCCccccccceeeeeeecccccccccEEEE----------EEcCCc-E
Confidence 467899999999998876443 355666777752 112221 1 11344321 467788 4
Q ss_pred EEEccCCccEEEEEeCCCceee----ccc-ccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCe
Q 008873 159 WASEKTGFRHLYLHDINGTCLG----PIT-EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPV 233 (550)
Q Consensus 159 ~~s~~~g~~~l~~~~~~~~~~~----~lT-~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~ 233 (550)
..+..+ ..++++++++++.. .|. .....|.... |+ |+.|+-.+ + ....|| ++ .+. +..
T Consensus 196 aass~D--~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva-Fs--g~~LASa~--~--~tIkLW--d~--~~~----~~~ 258 (588)
T 2j04_A 196 VAALSN--NSVFSMTVSASSHQPVSRMIQNASRRKITDLK-IV--DYKVVLTC--P--GYVHKI--DL--KNY----SIS 258 (588)
T ss_dssp EEEETT--CCEEEECCCSSSSCCCEEEEECCCSSCCCCEE-EE--TTEEEEEC--S--SEEEEE--ET--TTT----EEE
T ss_pred EEEeCC--CeEEEEECCCCccccceeeecccccCcEEEEE-EE--CCEEEEEe--C--CeEEEE--EC--CCC----eEE
Confidence 444333 34666676665432 242 2233455544 77 56666553 2 235555 65 332 221
Q ss_pred eeC-C-CCceEEEEE--CCCCCEEEEeecC
Q 008873 234 KLT-N-GKGKHVAVL--DHNMRNFVDFHDS 259 (550)
Q Consensus 234 ~lt-~-~~~~~~~~~--s~dg~~l~~~~s~ 259 (550)
.+. . .....++.+ |||+..++....+
T Consensus 259 ~~~~gh~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 259 SLKTGSLENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp EEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred EEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence 222 1 223566789 9999776555433
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.6e-05 Score=80.35 Aligned_cols=186 Identities=12% Similarity=0.053 Sum_probs=97.7
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCce--------EEEE
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPV--------SWMD 75 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~--------~~l~ 75 (550)
..++.|||||++||-...| ..|.+||+++++. ..+.
T Consensus 132 v~svafSPDG~~LAsgs~D------------------------------------GtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNED------------------------------------GELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp EEEEEECSSSSCEEEEETT------------------------------------SEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCC------------------------------------CEEEEEECCCCccccccceeeeeee
Confidence 4679999999999876443 1467889998853 3332
Q ss_pred cccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE----EEEEeec-CceeeccCccccCCCCC
Q 008873 76 LQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK----VILVEEL-DSWVNLHDCFTPLDKGV 150 (550)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~----~l~~~~~-~~~~~~~~~~~~~~~~~ 150 (550)
... .....-+..++||||| +++...++ .+++.++++++.. .|..... ..+ -+
T Consensus 176 ~~~-----~gh~~~V~sVawSPdg-Laass~D~-----tVrlWd~~~~~~~~~~~tL~~~h~~~V~--------sv---- 232 (588)
T 2j04_A 176 LSD-----AGSKDWVTHIVWYEDV-LVAALSNN-----SVFSMTVSASSHQPVSRMIQNASRRKIT--------DL---- 232 (588)
T ss_dssp CSC-----TTCCCCEEEEEEETTE-EEEEETTC-----CEEEECCCSSSSCCCEEEEECCCSSCCC--------CE----
T ss_pred ccc-----ccccccEEEEEEcCCc-EEEEeCCC-----eEEEEECCCCccccceeeecccccCcEE--------EE----
Confidence 210 1112357889999999 44333222 2777788887742 2321111 111 00
Q ss_pred ccCCCcEEEEEccCCccEEEEEeCCCceeeccccc-CeEEEEEEeE--eecCCEEEEEEcCCCCceeEEEEE---EeCCC
Q 008873 151 TKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGV--NEASGQVYFTGTLDGPLESHLYCA---KLYPD 224 (550)
Q Consensus 151 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~--s~dg~~l~f~~~~~~~~~~~l~~v---~~~~~ 224 (550)
.|+ +..+..+- ...|.+++..+++...+..| .-.+.++ .+ ++|++. +.++.+++ . .||.. ...++
T Consensus 233 aFs-g~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~v-a~~~s~d~~~-La~a~edG--~-klw~~d~~~~spd 303 (588)
T 2j04_A 233 KIV-DYKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHII-PLNHEKESTI-LLMSNKTS--Y-KVLLEDELHVTAD 303 (588)
T ss_dssp EEE-TTEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEE-EETTCSSCEE-EEECSSCE--E-EEEESSSEEEECC
T ss_pred EEE-CCEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEE-EeeeCCCCCE-EEEEcCCC--C-EEEeeccEEECCC
Confidence 234 34444332 25888999888776444433 2223444 48 888854 44444433 2 45542 12223
Q ss_pred CCC------------CC-CCCeeeCCCCceEEEEECCCCCEEEEee
Q 008873 225 WNH------------TL-EAPVKLTNGKGKHVAVLDHNMRNFVDFH 257 (550)
Q Consensus 225 g~~------------~~-~~~~~lt~~~~~~~~~~s~dg~~l~~~~ 257 (550)
+.. .. .....+......+.+++||||+.++..+
T Consensus 304 ~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 304 NIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp CSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEE
Confidence 320 00 0111111111256678999998877654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00031 Score=70.12 Aligned_cols=78 Identities=8% Similarity=0.007 Sum_probs=48.6
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCC-CceEE-EEcccCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAG-GPVSW-MDLQCGGTD 82 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~-l~~~~~~~~ 82 (550)
.++.|||||++|+-. .++ .|.+||+.+ ++... +... +..
T Consensus 181 ~~~~~~~~~~~l~s~--~d~-----------------------------------~i~iwd~~~~~~~~~~~~~~--~~~ 221 (447)
T 3dw8_B 181 NSISINSDYETYLSA--DDL-----------------------------------RINLWHLEITDRSFNIVDIK--PAN 221 (447)
T ss_dssp CEEEECTTSSEEEEE--CSS-----------------------------------EEEEEETTEEEEEEEEEECC--CSS
T ss_pred EEEEEcCCCCEEEEe--CCC-----------------------------------eEEEEECCCCCceeeeeecc--ccc
Confidence 578899999988764 221 367788884 33222 1111 101
Q ss_pred CCCCCceeEEEEECCCC-eEEEEEEecCCCceEEEEEECCCCce
Q 008873 83 QNYDEEYLARVNWMHGN-ILTAQVLNRSQTKLKVLKFDIKTGQR 125 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg-~~i~~~~~r~~~~~~l~~~~~~~g~~ 125 (550)
+......+..++|+||| +.++...... .|.+.++.+++.
T Consensus 222 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~ 261 (447)
T 3dw8_B 222 MEELTEVITAAEFHPNSCNTFVYSSSKG----TIRLCDMRASAL 261 (447)
T ss_dssp GGGCCCCEEEEEECSSCTTEEEEEETTS----CEEEEETTTCSS
T ss_pred ccccCcceEEEEECCCCCcEEEEEeCCC----eEEEEECcCCcc
Confidence 12334568889999999 6777665443 377888888774
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00069 Score=66.34 Aligned_cols=187 Identities=6% Similarity=-0.023 Sum_probs=97.6
Q ss_pred EEEEECCCCc------eEEEEcccCCCCCCCC--CceeEEEEEC----CCCeE-EEEEEecCCCceEEEEEECCC-----
Q 008873 61 LGVVSAAGGP------VSWMDLQCGGTDQNYD--EEYLARVNWM----HGNIL-TAQVLNRSQTKLKVLKFDIKT----- 122 (550)
Q Consensus 61 l~~~d~~~~~------~~~l~~~~~~~~~~~~--~~~~~~~~ws----pDg~~-i~~~~~r~~~~~~l~~~~~~~----- 122 (550)
|.+||+.+++ ...+... ... ...+..++|+ |||+. ++...... . |++.++.+
T Consensus 93 i~iw~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg--~--i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 93 LLFYRITREDETKKVIFEKLDLL------DSDMKKHSFWALKWGASNDRLLSHRLVATDVKG--T--TYIWKFHPFADES 162 (397)
T ss_dssp EEEEEEEECTTTCCEEEEEECCS------CTTGGGSCEEEEEEECCC----CEEEEEEETTS--C--EEEEEEESSSSHH
T ss_pred EEEEEccCCcccccccceeeccc------ccccCCCcEEEEEEeeccCCCCceEEEEEeCCC--c--EEEEeCCcccccc
Confidence 5778888776 3333211 000 3567889999 99998 76654332 2 44555544
Q ss_pred -Cce-E-----EEEE-----eecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceee-cccc---c-
Q 008873 123 -GQR-K-----VILV-----EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITE---G- 185 (550)
Q Consensus 123 -g~~-~-----~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~-~lT~---~- 185 (550)
++. . .+.. ......+ .-+ .++++++++....+| .|.++++.+++.. .+.. .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~----~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFA------TSV----DISERGLIATGFNNG--TVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCC------CEE----EECTTSEEEEECTTS--EEEEEETTTTEEEEEEECCC---
T ss_pred ccceeeccCcceeeeeeccccCCCCCc------eEE----EECCCceEEEEeCCC--cEEEEECCCCceeEEEecccccc
Confidence 332 2 2221 0001000 000 245555444443344 5777887665433 3333 2
Q ss_pred --CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC--------------CCceEEEEECCC
Q 008873 186 --DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN--------------GKGKHVAVLDHN 249 (550)
Q Consensus 186 --~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~--------------~~~~~~~~~s~d 249 (550)
...+..+ .|+|+++.|+..+..... ..|...++. .+. ....+.. ......+.|+|+
T Consensus 231 ~~~~~i~~i-~~~~~~~~l~~~~~d~~~--g~i~i~d~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 231 NNSNSIRSV-KFSPQGSLLAIAHDSNSF--GCITLYETE-FGE----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp CCCCCEEEE-EECSSTTEEEEEEEETTE--EEEEEEETT-TCC----EEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred ccCCccceE-EECCCCCEEEEEecCCCC--ceEEEEECC-CCc----ccceeccCcccccccccccccCCcEEEEEECCC
Confidence 4345555 499999887766543211 345555762 221 2233332 234677799999
Q ss_pred CCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 250 MRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 250 g~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
+++|+....+ ..+.+.++.+++.+..+.
T Consensus 303 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 303 GETLCSAGWD----GKLRFWDVKTKERITTLN 330 (397)
T ss_dssp SSEEEEEETT----SEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEeCC----CeEEEEEcCCCceeEEEe
Confidence 9987655433 489999998887655554
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00093 Score=64.38 Aligned_cols=58 Identities=5% Similarity=0.070 Sum_probs=40.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEE--CCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW--MHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 130 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w--spDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~ 130 (550)
.|.+||+++++...+. .....+..+.| +||++.++...... .|.+.++.+++......
T Consensus 109 ~v~iwd~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~ 168 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIA---------QHDAPVKTIHWIKAPNYSCVMTGSWDK----TLKFWDTRSSNPMMVLQ 168 (368)
T ss_dssp EEEEEETTTTEEEEEE---------ECSSCEEEEEEEECSSCEEEEEEETTS----EEEEECSSCSSCSEEEE
T ss_pred cEEEEEcCCCCceeec---------cccCceEEEEEEeCCCCCEEEEccCCC----cEEEEECCCCcEEEEEe
Confidence 4788999998876542 22456788899 99999877765332 48888888887544333
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0023 Score=60.69 Aligned_cols=163 Identities=12% Similarity=0.129 Sum_probs=87.4
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
...+..++|+|||++++...... .|.+.|+.+|+...... ...... . . .+++++ +++....+
T Consensus 65 ~~~v~~~~~s~dg~~l~s~s~D~----~v~~wd~~~~~~~~~~~~h~~~v~-~----~-------~~~~~~~~l~s~s~D 128 (319)
T 3frx_A 65 SHIVQDCTLTADGAYALSASWDK----TLRLWDVATGETYQRFVGHKSDVM-S----V-------DIDKKASMIISGSRD 128 (319)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECCSSCEE-E----E-------EECTTSCEEEEEETT
T ss_pred cccEEEEEECCCCCEEEEEeCCC----EEEEEECCCCCeeEEEccCCCcEE-E----E-------EEcCCCCEEEEEeCC
Confidence 45677889999999887765432 37777888887644332 111111 0 1 123443 55554445
Q ss_pred CccEEEEEeCCCceeecccccCeEEEEEEeEeecCC-----EEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-C
Q 008873 165 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASG-----QVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-G 238 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~-----~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~ 238 (550)
|. |.+.+.++.....+......+.... ++|.++ .+++++..++. ..+| ++. .+. ....+.. .
T Consensus 129 ~~--i~vwd~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~~~~~l~s~~~d~~--i~~w--d~~-~~~----~~~~~~~h~ 196 (319)
T 3frx_A 129 KT--IKVWTIKGQCLATLLGHNDWVSQVR-VVPNEKADDDSVTIISAGNDKM--VKAW--NLN-QFQ----IEADFIGHN 196 (319)
T ss_dssp SC--EEEEETTSCEEEEECCCSSCEEEEE-ECCC------CCEEEEEETTSC--EEEE--ETT-TTE----EEEEECCCC
T ss_pred Ce--EEEEECCCCeEEEEeccCCcEEEEE-EccCCCCCCCccEEEEEeCCCE--EEEE--ECC-cch----hheeecCCC
Confidence 54 4455666655554444333333333 555322 23444444432 4555 551 111 1222322 2
Q ss_pred CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.....+.|+|||++|+....+ ..+.+.++.+++.+..+.
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~d----g~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKD----GEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETT----CEEEEEETTTTEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCcEEEEec
Confidence 336777899999987654333 478888987776554443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0011 Score=70.60 Aligned_cols=182 Identities=14% Similarity=0.096 Sum_probs=97.9
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEee--cCcee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE--LDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~--~~~~~ 137 (550)
.|.+||+.+++.... + ......+..++|||||+.++....... |.+.+..+.....+.... ...++
T Consensus 453 ~v~vwd~~~~~~~~~-~-------~~h~~~v~~~~~s~~~~~l~s~s~D~~----i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRR-F-------VGHTKDVLSVAFSLDNRQIVSASRDRT----IKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEEEEETTTTEEEEE-E-------ECCSSCEEEEEECTTSSCEEEEETTSC----EEEECTTSCEEEEECSSTTSCSSCE
T ss_pred cEEEEECCCCcceeE-E-------eCCCCCEEEEEEeCCCCEEEEEeCCCE----EEEEECCCCcceeeccCCCCCCCcE
Confidence 478899998865432 1 122446788999999998877654322 445555544333222110 01111
Q ss_pred eccCccccCCCCCccCCC---cEEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 138 NLHDCFTPLDKGVTKYSG---GFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~---~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
.. . .++++ .+++....+| .|.++|+.+.+. ..+..+...+... .|+|+|+.|+..+. ++ .
T Consensus 521 ~~---~-------~~~~~~~~~~l~s~s~d~--~v~vwd~~~~~~~~~~~~h~~~v~~v-~~spdg~~l~sg~~-Dg--~ 584 (694)
T 3dm0_A 521 SC---V-------RFSPNTLQPTIVSASWDK--TVKVWNLSNCKLRSTLAGHTGYVSTV-AVSPDGSLCASGGK-DG--V 584 (694)
T ss_dssp EE---E-------EECSCSSSCEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEE-EECTTSSEEEEEET-TS--B
T ss_pred EE---E-------EEeCCCCcceEEEEeCCC--eEEEEECCCCcEEEEEcCCCCCEEEE-EEeCCCCEEEEEeC-CC--e
Confidence 11 1 12222 2444443344 466667665543 3444444445555 49999987665444 33 2
Q ss_pred eEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 214 SHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
..|| ++. .+. ....+........+.|+|++..++.... ..+.+.++.+++.+..+.
T Consensus 585 i~iw--d~~-~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~~~~~~~~~~~ 640 (694)
T 3dm0_A 585 VLLW--DLA-EGK----KLYSLEANSVIHALCFSPNRYWLCAATE-----HGIKIWDLESKSIVEDLK 640 (694)
T ss_dssp CEEE--ETT-TTE----EEECCBCSSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEEEEEEC
T ss_pred EEEE--ECC-CCc----eEEEecCCCcEEEEEEcCCCcEEEEEcC-----CCEEEEECCCCCChhhhc
Confidence 4555 552 221 1222223334677789999987654432 258889998777555443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0035 Score=60.57 Aligned_cols=191 Identities=9% Similarity=0.030 Sum_probs=90.1
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCC--CeEEEEEEecCCCceEEEEEECCCCceEE-EEEeecCce
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKTGQRKV-ILVEELDSW 136 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspD--g~~i~~~~~r~~~~~~l~~~~~~~g~~~~-l~~~~~~~~ 136 (550)
.|.+||+.+++...+... ......+..++|+|+ |+.++...... .|.+.++.+++... +........
T Consensus 80 ~v~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVH------AVHSASVNSVQWAPHEYGPLLLVASSDG----KVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp CEEEEEEETTEEEEEEEE------CCCSSCEEEEEECCGGGCSEEEEEETTS----EEEEEECCTTSCCCEEEEECCTTC
T ss_pred EEEEEEcCCCceeEeeee------cCCCcceEEEEeCCCCCCCEEEEecCCC----cEEEEecCCCCceeeEEecCCCCc
Confidence 367889988864332221 223456888999999 88777765332 37777777764321 111111111
Q ss_pred eeccCccccCC----CCCccC-CCcEEEEEccCCccEEEEEeCCCce-----eecccccCeEEEEEEeEeecC--CEEEE
Q 008873 137 VNLHDCFTPLD----KGVTKY-SGGFIWASEKTGFRHLYLHDINGTC-----LGPITEGDWMVEQIVGVNEAS--GQVYF 204 (550)
Q Consensus 137 ~~~~~~~~~~~----~~~~~~-~~~~~~~s~~~g~~~l~~~~~~~~~-----~~~lT~~~~~~~~~~~~s~dg--~~l~f 204 (550)
+.. -.+.+.. ...... ...+++....+|. |.++++.+++ ...+......+.... |+|++ ..+++
T Consensus 150 v~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~-~sp~~~~~~~l~ 225 (379)
T 3jrp_A 150 VNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNL--VKIWKYNSDAQTYVLESTLEGHSDWVRDVA-WSPTVLLRSYLA 225 (379)
T ss_dssp EEE-EEECCCC----------CTTCEEEEEETTSC--EEEEEEETTTTEEEEEEEECCCSSCEEEEE-ECCCCSSSEEEE
T ss_pred eEE-EEEcCccccccccccCCCCCCEEEEEeCCCe--EEEEEecCCCcceeeEEEEecccCcEeEEE-ECCCCCCCCeEE
Confidence 100 0011100 000000 1235555545554 4444443321 123333333455554 99993 34444
Q ss_pred EEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC----CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 205 TGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT----NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 205 ~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt----~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
++..++. ..+|.+.. ... . ....+. .......+.|+|||++|+....+ ..+++.++..+.
T Consensus 226 s~~~dg~--i~iwd~~~--~~~-~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iw~~~~~~ 289 (379)
T 3jrp_A 226 SVSQDRT--CIIWTQDN--EQG-P--WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD----NKVTLWKENLEG 289 (379)
T ss_dssp EEETTSC--EEEEEESS--TTS-C--CEEEESSSSCCSSCEEEEEECSSSCCEEEEESS----SSEEEEEEEETT
T ss_pred EEeCCCE--EEEEeCCC--CCc-c--ceeeeeccccCCCcEEEEEEcCCCCEEEEecCC----CcEEEEeCCCCC
Confidence 5544442 56664432 111 0 112222 12236677999999987665443 245555554333
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.004 Score=58.97 Aligned_cols=159 Identities=13% Similarity=0.028 Sum_probs=86.6
Q ss_pred EEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEE
Q 008873 92 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLY 170 (550)
Q Consensus 92 ~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~ 170 (550)
.+++.+.+..|++.. .. ...|.+++.++...+.+....... |.. ...++ ++.+|+++......|+
T Consensus 81 glavd~~~~~ly~~d-~~--~~~I~~~~~~g~~~~~~~~~~~~~---------P~~--iavdp~~g~ly~~d~~~~~~I~ 146 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTD-SV--LGTVSVADTKGVKRKTLFRENGSK---------PRA--IVVDPVHGFMYWTDWGTPAKIK 146 (316)
T ss_dssp EEEEETTTTEEEEEE-TT--TTEEEEEETTSSSEEEEEECTTCC---------EEE--EEEETTTTEEEEEECSSSCEEE
T ss_pred EEEEeecCCeEEEEE-CC--CCEEEEEeCCCCceEEEEECCCCC---------cce--EEeCCCCCEEEEEccCCCCeEE
Confidence 456776665554443 22 235889999877766665421110 000 01233 4577777754346899
Q ss_pred EEeCCCceeecccccCeE-EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee-CCC---CceEEEE
Q 008873 171 LHDINGTCLGPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-TNG---KGKHVAV 245 (550)
Q Consensus 171 ~~~~~~~~~~~lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l-t~~---~~~~~~~ 245 (550)
+++++|...+.+...... ..++ .++++++.||++-... ..|+++++ +|+ ..+.+ ... ..-..++
T Consensus 147 ~~~~dG~~~~~~~~~~~~~P~gl-a~d~~~~~lY~~D~~~----~~I~~~d~--dg~----~~~~~~~~~~~~~~P~gia 215 (316)
T 1ijq_A 147 KGGLNGVDIYSLVTENIQWPNGI-TLDLLSGRLYWVDSKL----HSISSIDV--NGG----NRKTILEDEKRLAHPFSLA 215 (316)
T ss_dssp EEETTSCCEEEEECSSCSCEEEE-EEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEEECTTTTSSEEEEE
T ss_pred EEcCCCCCeEEEEECCCCCceEE-EEeccCCEEEEEECCC----CeEEEEec--CCC----ceEEEeecCCccCCcEEEE
Confidence 999988766555332221 2334 4898999999986543 47888898 554 22333 211 1123334
Q ss_pred ECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 246 LDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 246 ~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
+ ++..++++-.. ...|.+++..+|+..+.+
T Consensus 216 v--~~~~ly~~d~~---~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 216 V--FEDKVFWTDII---NEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp E--ETTEEEEEETT---TTEEEEEETTTCCCCEEE
T ss_pred E--ECCEEEEEECC---CCeEEEEeCCCCcceEEE
Confidence 4 23455444321 246777776566544333
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0013 Score=63.66 Aligned_cols=81 Identities=2% Similarity=-0.100 Sum_probs=50.3
Q ss_pred eEeecCCEEEEEEcCC-C---CceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEE
Q 008873 194 GVNEASGQVYFTGTLD-G---PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLC 269 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~~-~---~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~ 269 (550)
.+++||+++|+..... + .....+..+|+. ... ....+..+.+-..+.+++||++++++.... ...+.++
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-t~~----vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~--~~~VsVI 342 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-VGQ----TSGPISNGHDSDAIIAAQDGASDNYANSAG--TEVLDIY 342 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-SCC----EEECCEEEEEECEEEECCSSSCEEEEEETT--TTEEEEE
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECC-CCe----EEEEEECCCCcceEEECCCCCEEEEEccCC--CCeEEEE
Confidence 4899999999876512 1 001233377873 221 234444333455668999999776665411 2489999
Q ss_pred EcCCCceeEecc
Q 008873 270 SLQDGSLVLPLY 281 (550)
Q Consensus 270 ~~~~g~~~~~l~ 281 (550)
|+.+++.++.+.
T Consensus 343 D~~t~kvv~~I~ 354 (368)
T 1mda_H 343 DAASDQDQSSVE 354 (368)
T ss_dssp ESSSCEEEEECC
T ss_pred ECCCCcEEEEEE
Confidence 999998776664
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0013 Score=67.59 Aligned_cols=203 Identities=12% Similarity=0.018 Sum_probs=106.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+++|..+.+...++.- ......-...|+|||++++...+.. ..|.++|+++++........+....+
T Consensus 321 ~v~~vd~~~~~~~~v~~i-------~~~~~~~d~~~~pdgr~~~va~~~s---n~V~ViD~~t~kl~~~i~vgg~~Php- 389 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEI-------SAERFLHDGGLDGSHRYFITAANAR---NKLVVIDTKEGKLVAIEDTGGQTPHP- 389 (567)
T ss_dssp EEEEEETTCSSEEEEEEE-------ECCSSEEEEEECTTSCEEEEEEGGG---TEEEEEETTTTEEEEEEECSSSSBCC-
T ss_pred eEEEEecCCCccceeeee-------eccccccCceECCCCCEEEEEeCCC---CeEEEEECCCCcEEEEEeccCcCCCC-
Confidence 467777766543222110 1122334578999999776665433 24889999999865443320110000
Q ss_pred cCccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCce--------eecccc-cCeEEEEEEeEeecCCEEEEEEcCC
Q 008873 140 HDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTC--------LGPITE-GDWMVEQIVGVNEASGQVYFTGTLD 209 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~~--------~~~lT~-~~~~~~~~~~~s~dg~~l~f~~~~~ 209 (550)
+....+ .+++ +.+|.+...|-..|-+++.+.++ .+.|.. |... -+...+|++++||+....
T Consensus 390 g~g~~~------~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~--~~i~~~p~~~~l~v~~~~- 460 (567)
T 1qks_A 390 GRGANF------VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGS--LFIKTHPNSQYLYVDATL- 460 (567)
T ss_dssp TTCEEE------EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC--CCEECCTTCSEEEEECTT-
T ss_pred ccceee------ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCC--EEEEeCCCCCeEEEecCC-
Confidence 000000 1233 45565555455568888866521 222221 2110 122368999998876432
Q ss_pred CC---ceeEEEEEEeCCCC-CCCCCCCeeeC--------C-CCceEEEEECCCCCEEEEeecC-CCCCCEEEEEEcCCCc
Q 008873 210 GP---LESHLYCAKLYPDW-NHTLEAPVKLT--------N-GKGKHVAVLDHNMRNFVDFHDS-LDSPPRILLCSLQDGS 275 (550)
Q Consensus 210 ~~---~~~~l~~v~~~~~g-~~~~~~~~~lt--------~-~~~~~~~~~s~dg~~l~~~~s~-~~~p~~l~~~~~~~g~ 275 (550)
++ ....|..+++.... .......+.+. . +.....+.|++||+++.++.-+ -.....|.++|.++++
T Consensus 461 ~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 461 NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 22 12467777773110 00001113332 1 2235566899999998876432 2345789999999888
Q ss_pred eeEeccC
Q 008873 276 LVLPLYE 282 (550)
Q Consensus 276 ~~~~l~~ 282 (550)
..+++..
T Consensus 541 ~~~~i~~ 547 (567)
T 1qks_A 541 LKHVIKD 547 (567)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 7666643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0014 Score=62.08 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=87.1
Q ss_pred EEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEE
Q 008873 92 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLY 170 (550)
Q Consensus 92 ~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~ 170 (550)
.+++.+.+..|++. +... ..|.++++++...+.+...... . |. ....++ ++.+|.++......|+
T Consensus 83 glavd~~~g~ly~~-d~~~--~~I~~~~~dG~~~~~l~~~~~~-~--------P~--giavdp~~g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 83 GLACDWLGEKLYWT-DSET--NRIEVSNLDGSLRKVLFWQELD-Q--------PR--AIALDPSSGFMYWTDWGEVPKIE 148 (318)
T ss_dssp EEEEETTTTEEEEE-ETTT--TEEEEEETTSCSCEEEECSSCS-S--------EE--EEEEEGGGTEEEEEECSSSCEEE
T ss_pred EEEEEcCCCeEEEE-ECCC--CEEEEEECCCCcEEEEEeCCCC-C--------cc--EEEEeCCCCEEEEEecCCCCEEE
Confidence 35666655555444 3322 3588999988766655431110 0 00 001233 3577888765567899
Q ss_pred EEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc--eEEEEEC
Q 008873 171 LHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG--KHVAVLD 247 (550)
Q Consensus 171 ~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~--~~~~~~s 247 (550)
+++++|...+.+..... .-.++ .++++++.||++-... ..|+++++ +|+ ..+.+..... -..+++
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pngl-avd~~~~~lY~aD~~~----~~I~~~d~--dG~----~~~~~~~~~~~~P~glav- 216 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGL-TLDYEEQKLYWADAKL----NFIHKSNL--DGT----NRQAVVKGSLPHPFALTL- 216 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEE-EEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEECSCCSCEEEEEE-
T ss_pred EEEcCCCCeEEEEECCCCCccEE-EEeccCCEEEEEECCC----CEEEEEcC--CCC----ceEEEecCCCCCceEEEE-
Confidence 99998876555533222 12334 4899999999986543 47899998 664 2333332111 223333
Q ss_pred CCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 248 HNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 248 ~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
+++.++++-. ....|++++..+|+..+.+
T Consensus 217 -~~~~lywtd~---~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 217 -FEDILYWTDW---STHSILACNKYTGEGLREI 245 (318)
T ss_dssp -ETTEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred -eCCEEEEEec---CCCeEEEEECCCCCceEEE
Confidence 3444544422 2236777776666544333
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0017 Score=63.54 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=58.0
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe---e--cCceeeccCccccCCCCCccCCCc-EEEE
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE---E--LDSWVNLHDCFTPLDKGVTKYSGG-FIWA 160 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (550)
...+..++|+||| .++..... ..|.+.++.+++....... . ....+. .+ .+++++ +++.
T Consensus 186 ~~~i~~~~~~~~~-~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~---~i-------~~~~~~~~l~~ 250 (397)
T 1sq9_A 186 SQFATSVDISERG-LIATGFNN----GTVQISELSTLRPLYNFESQHSMINNSNSIR---SV-------KFSPQGSLLAI 250 (397)
T ss_dssp CCCCCEEEECTTS-EEEEECTT----SEEEEEETTTTEEEEEEECCC---CCCCCEE---EE-------EECSSTTEEEE
T ss_pred CCCceEEEECCCc-eEEEEeCC----CcEEEEECCCCceeEEEeccccccccCCccc---eE-------EECCCCCEEEE
Confidence 3456778999999 65554322 2488889988876544332 1 011110 01 234443 4444
Q ss_pred Ecc-CCccEEEEEeCCCce-eecccc-------------cCeEEEEEEeEeecCCEEEEEEc
Q 008873 161 SEK-TGFRHLYLHDINGTC-LGPITE-------------GDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 161 s~~-~g~~~l~~~~~~~~~-~~~lT~-------------~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
... ++...|.++++.+++ ...+.. ....+... .|+|+++.|+..+.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL-SFNDSGETLCSAGW 311 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE-EECSSSSEEEEEET
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE-EECCCCCEEEEEeC
Confidence 333 334678888876554 334433 33345554 49999987765553
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.005 Score=59.34 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=84.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECC--CCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMH--GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wsp--Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
.+.+||+++++.... + ......+..+.|+| +|+.++...... .|.+.|+.++++....... ...+
T Consensus 177 ~v~lwd~~~~~~~~~-~-------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg----~v~~wd~~~~~~~~~~~~h-~~~v 243 (354)
T 2pbi_B 177 TCALWDVESGQLLQS-F-------HGHGADVLCLDLAPSETGNTFVSGGCDK----KAMVWDMRSGQCVQAFETH-ESDV 243 (354)
T ss_dssp EEEEEETTTCCEEEE-E-------ECCSSCEEEEEECCCSSCCEEEEEETTS----CEEEEETTTCCEEEEECCC-SSCE
T ss_pred cEEEEeCCCCeEEEE-E-------cCCCCCeEEEEEEeCCCCCEEEEEeCCC----eEEEEECCCCcEEEEecCC-CCCe
Confidence 467889998876432 1 12233456677776 567776665333 3777888888865433211 1111
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee-ecccccC--eEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL-GPITEGD--WMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~--~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
.. . .+++++ +++....+| .|.++|+..++. ..+.... ..+... .|+++|+.|+..+.. + .
T Consensus 244 ~~---v-------~~~p~~~~l~s~s~D~--~v~lwd~~~~~~~~~~~~~~~~~~~~~~-~~s~~g~~l~~g~~d-~--~ 307 (354)
T 2pbi_B 244 NS---V-------RYYPSGDAFASGSDDA--TCRLYDLRADREVAIYSKESIIFGASSV-DFSLSGRLLFAGYND-Y--T 307 (354)
T ss_dssp EE---E-------EECTTSSEEEEEETTS--CEEEEETTTTEEEEEECCTTCCSCEEEE-EECTTSSEEEEEETT-S--C
T ss_pred EE---E-------EEeCCCCEEEEEeCCC--eEEEEECCCCcEEEEEcCCCcccceeEE-EEeCCCCEEEEEECC-C--c
Confidence 11 1 223433 444443444 355666655432 2222221 223333 489999876655443 2 2
Q ss_pred eEEEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEe
Q 008873 214 SHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~ 256 (550)
..|| ++. .+. ....+... .....+.|||||++|+..
T Consensus 308 i~vw--d~~-~~~----~~~~l~~h~~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 308 INVW--DVL-KGS----RVSILFGHENRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp EEEE--ETT-TCS----EEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EEEE--ECC-CCc----eEEEEECCCCcEEEEEECCCCCEEEEE
Confidence 4555 552 222 23334332 236777999999977544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0046 Score=60.77 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=69.6
Q ss_pred EEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEE
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHL 169 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l 169 (550)
..++..+.++.|++. +... ..|.+++++++..+.+....... +. .+ ..++ ++.+|.++......|
T Consensus 162 ~glavD~~~~~lY~~-d~~~--~~I~~~~~~g~~~~~l~~~~~~~--P~--~i-------avdp~~g~ly~td~~~~~~I 227 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWT-DSVL--GTVSVADTKGVKRKTLFRENGSK--PR--AI-------VVDPVHGFMYWTDWGTPAKI 227 (400)
T ss_dssp EEEEEETTTTEEEEE-ETTT--TEEEEECTTTCSEEEEEECSSCC--EE--EE-------EEETTTTEEEEEECSSSCCE
T ss_pred ccEEEEecCCceEEE-ECCC--CeEEEEeCCCCceEEEEeCCCCC--cc--eE-------EEecccCeEEEEeCCCCCEE
Confidence 345666655555444 3322 25889999988776665421110 00 00 1233 457888876545689
Q ss_pred EEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 170 YLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 170 ~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
++++++|...+.+..... ...++ .++++++.||++-... ..|+++++ +|.
T Consensus 228 ~~~~~dG~~~~~~~~~~l~~P~gl-avd~~~~~lY~aD~~~----~~I~~~d~--dG~ 278 (400)
T 3p5b_L 228 KKGGLNGVDIYSLVTENIQWPNGI-TLDLLSGRLYWVDSKL----HSISSIDV--NGG 278 (400)
T ss_dssp EEEETTSCSCEEEECSSCSCEEEE-EEETTTTEEEEEETTT----TEEEEEET--TSC
T ss_pred EEEeCCCCccEEEEECCCCceEEE-EEEeCCCEEEEEECCC----CEEEEEeC--CCC
Confidence 999999876665543322 22334 4888899999985543 47889998 664
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0047 Score=58.73 Aligned_cols=163 Identities=11% Similarity=0.082 Sum_probs=82.0
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC-cEEEEEccCC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG-GFIWASEKTG 165 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~g 165 (550)
...+..+.|+|||+.++...... .|...+...+............-.. . .+.++ .+++....+|
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~----~i~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~l~s~s~d~ 150 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDG----TLRLWDLTTGTTTRRFVGHTKDVLS----V-------AFSSDNRQIVSGSRDK 150 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECCSSCEEE----E-------EECTTSSCEEEEETTS
T ss_pred CCCEEEEEECCCCCEEEEEcccc----cceEEeecccceeeeecCCCCceeE----E-------EEeecCccceeecCCC
Confidence 45678899999999887765332 3677777776654433322111000 0 01122 2343333344
Q ss_pred ccEEEEEeCCCceeecc--cccCeEEEEEEeEeecCCE-EEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-CCce
Q 008873 166 FRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQ-VYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-GKGK 241 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~~l--T~~~~~~~~~~~~s~dg~~-l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~~ 241 (550)
. +.+++..+.....+ ....-.+... .+++++.. +++++..++. ..+ .++. .+. ....+.. ....
T Consensus 151 ~--~~~~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~s~~~d~~--i~i--~d~~-~~~----~~~~~~~h~~~v 218 (340)
T 4aow_A 151 T--IKLWNTLGVCKYTVQDESHSEWVSCV-RFSPNSSNPIIVSCGWDKL--VKV--WNLA-NCK----LKTNHIGHTGYL 218 (340)
T ss_dssp C--EEEECTTSCEEEEECSSSCSSCEEEE-EECSCSSSCEEEEEETTSC--EEE--EETT-TTE----EEEEECCCSSCE
T ss_pred e--EEEEEeCCCceEEEEeccccCcccce-EEccCCCCcEEEEEcCCCE--EEE--EECC-CCc----eeeEecCCCCcE
Confidence 3 44555544332222 1112223333 36666543 4444444432 334 3552 121 1223332 2236
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
..+.|+||+++|+....+ ..+.+.++.+++.+..+
T Consensus 219 ~~~~~s~~~~~l~s~s~D----g~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKD----GQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp EEEEECTTSSEEEEEETT----CEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCC----CeEEEEEeccCceeeee
Confidence 777899999987654332 47888888777654444
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.009 Score=56.07 Aligned_cols=181 Identities=8% Similarity=0.029 Sum_probs=92.0
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~~~~~~~ 138 (550)
.|.+||+.+++.... + ......+..++|+||++.++...... .|.+.+++++.. ..... .....+.
T Consensus 78 ~i~vwd~~~~~~~~~-~-------~~h~~~v~~~~~~~~~~~l~sgs~D~----~v~lWd~~~~~~~~~~~~-~h~~~v~ 144 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVD-F-------EAHPDYIRSIAVHPTKPYVLSGSDDL----TVKLWNWENNWALEQTFE-GHEHFVM 144 (304)
T ss_dssp EEEEEETTTCCEEEE-E-------ECCSSCEEEEEECSSSSEEEEEETTS----CEEEEEGGGTTEEEEEEC-CCCSCEE
T ss_pred EEEEEECCCCcEEEE-E-------eCCCCcEEEEEEcCCCCEEEEECCCC----eEEEEECCCCcchhhhhc-ccCCcEE
Confidence 467889998875432 2 12245678899999999887665433 255666666643 22221 1111111
Q ss_pred ccCccccCCCCCccCC-C-cEEEEEccCCccEEEEEeCCCcee-eccccc-CeEEEEEEeEee--cCCEEEEEEcCCCCc
Q 008873 139 LHDCFTPLDKGVTKYS-G-GFIWASEKTGFRHLYLHDINGTCL-GPITEG-DWMVEQIVGVNE--ASGQVYFTGTLDGPL 212 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~-~-~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~-~~~~~~~~~~s~--dg~~l~f~~~~~~~~ 212 (550)
. . .+++ + .+++....+| .|.++|+..++. ..+..+ ...+... .+++ +++.|+ ++..++
T Consensus 145 ~---v-------~~~p~~~~~l~sgs~D~--~v~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~-s~s~D~-- 208 (304)
T 2ynn_A 145 C---V-------AFNPKDPSTFASGCLDR--TVKVWSLGQSTPNFTLTTGQERGVNYV-DYYPLPDKPYMI-TASDDL-- 208 (304)
T ss_dssp E---E-------EECTTCTTEEEEEETTS--EEEEEETTCSSCSEEEECCCTTCEEEE-EECCSTTCCEEE-EEETTS--
T ss_pred E---E-------EECCCCCCEEEEEeCCC--eEEEEECCCCCccceeccCCcCcEEEE-EEEEcCCCCEEE-EEcCCC--
Confidence 0 1 1233 2 2444444444 456666544322 223222 2223322 3554 554444 444443
Q ss_pred eeEEEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 213 ESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 213 ~~~l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...|| ++. .+. ....+... .....+.|+|++..|+-...+ ..+.+.++.+++..+.+
T Consensus 209 ~i~iW--d~~-~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~D----g~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 209 TIKIW--DYQ-TKS----CVATLEGHMSNVSFAVFHPTLPIIISGSED----GTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp EEEEE--ETT-TTE----EEEEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEETTTCCEEEEE
T ss_pred eEEEE--eCC-CCc----cceeeCCCCCCEEEEEECCCCCEEEEEcCC----CeEEEEECCCCceeeec
Confidence 24444 652 221 22333322 235667899999876543322 36788888777755544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0051 Score=56.15 Aligned_cols=172 Identities=12% Similarity=0.010 Sum_probs=95.1
Q ss_pred EEEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEee-cCce
Q 008873 59 VRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSW 136 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~-~~~~ 136 (550)
..|.++|+++++... +.++ . ...-..+++ +|+.++....+. ..++++|.++++...-.... ..+|
T Consensus 44 s~v~~iD~~tg~v~~~i~l~-------~-~~fgeGi~~--~g~~lyv~t~~~---~~v~viD~~t~~v~~~i~~g~~~g~ 110 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMD-------D-SYFGEGLTL--LNEKLYQVVWLK---NIGFIYDRRTLSNIKNFTHQMKDGW 110 (266)
T ss_dssp CEEEEEETTTCCEEEEEECC-------T-TCCEEEEEE--ETTEEEEEETTC---SEEEEEETTTTEEEEEEECCSSSCC
T ss_pred CEEEEEECCCCCEEEEEecC-------C-CcceEEEEE--eCCEEEEEEecC---CEEEEEECCCCcEEEEEECCCCCeE
Confidence 468999999998753 4332 1 111112333 466665554333 35999999988754322211 1223
Q ss_pred eeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCce-eecccccC--eE---EEEEEeEeecCCEEEEEEcCCC
Q 008873 137 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITEGD--WM---VEQIVGVNEASGQVYFTGTLDG 210 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~-~~~lT~~~--~~---~~~~~~~s~dg~~l~f~~~~~~ 210 (550)
. .+.++ +.+|+|+ |-..|+++|.++.+ .+.+.-+. .. ..... +. +| .||......
T Consensus 111 g------------lt~Dg-~~l~vs~--gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele-~~-dg-~lyvn~~~~- 171 (266)
T 2iwa_A 111 G------------LATDG-KILYGSD--GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE-YI-NG-EVWANIWQT- 171 (266)
T ss_dssp E------------EEECS-SSEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE-EE-TT-EEEEEETTS-
T ss_pred E------------EEECC-CEEEEEC--CCCeEEEEECCCCcEEEEEEECCCCcccccceeEE-EE-CC-EEEEecCCC-
Confidence 1 11222 3566776 45689999987754 33443321 11 12222 44 55 677554332
Q ss_pred CceeEEEEEEeCCCCCCCCCCCeeeCCC--------------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 211 PLESHLYCAKLYPDWNHTLEAPVKLTNG--------------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 211 ~~~~~l~~v~~~~~g~~~~~~~~~lt~~--------------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
-.|.++|.. .+. ....+... ...+.++++|+++.++.+...+ +.++++++..
T Consensus 172 ---~~V~vID~~-tg~----V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~---~~v~~i~l~~ 237 (266)
T 2iwa_A 172 ---DCIARISAK-DGT----LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW---PKLFEIKLHL 237 (266)
T ss_dssp ---SEEEEEETT-TCC----EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---SEEEEEEEEE
T ss_pred ---CeEEEEECC-CCc----EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC---CeEEEEEEec
Confidence 378889983 332 22333221 1236678999999887776544 5888888743
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0011 Score=64.64 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=101.8
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE-EEEcccCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTDQ 83 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~ 83 (550)
.++.|||||++|+-...| ..|.+||+.+++.. .+..
T Consensus 70 ~~~~~sp~~~~l~s~s~D------------------------------------~~v~iWd~~~~~~~~~~~~------- 106 (380)
T 3iz6_a 70 YSLDWTPEKNWIVSASQD------------------------------------GRLIVWNALTSQKTHAIKL------- 106 (380)
T ss_dssp EEEEECTTSSCEEEEETT------------------------------------SEEEEEETTTTEEEEEEEC-------
T ss_pred EEEEEcCCCCEEEEEeCC------------------------------------CeEEEEECCCCccceEEec-------
Confidence 567899999988755333 14678899887653 2322
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce--------EEEEEeecCceeeccCccccCCCCCccCC-
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR--------KVILVEELDSWVNLHDCFTPLDKGVTKYS- 154 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (550)
....+...+|+|||+.++...... .-.||. +.++.. +.+...... ...+ .+.+
T Consensus 107 --h~~~v~~~~~s~~g~~las~~~d~--~v~iw~--~~~~~~~~~~~~~~~~~~gh~~~--------v~~~----~~~~~ 168 (380)
T 3iz6_a 107 --HCPWVMECAFAPNGQSVACGGLDS--ACSIFN--LSSQADRDGNMPVSRVLTGHKGY--------ASSC----QYVPD 168 (380)
T ss_dssp --CCTTCCCCEECTTSSEEEECCSSS--CCEEEE--CCCCSSCCCSSTTCCBCCCCSSC--------CCCC----BCCSS
T ss_pred --CCCCEEEEEECCCCCEEEEeeCCC--cEEEEE--CCCCccccCCccceeeccCCCcc--------eEEE----EEecC
Confidence 123456679999999887654332 223444 433210 011111000 0000 1222
Q ss_pred -CcEEEEEccCCccEEEEEeCCCceee-cc-----cccCeEEEEEEeEee-cCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 155 -GGFIWASEKTGFRHLYLHDINGTCLG-PI-----TEGDWMVEQIVGVNE-ASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 155 -~~~~~~s~~~g~~~l~~~~~~~~~~~-~l-----T~~~~~~~~~~~~s~-dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
+..++....++ .|.++|+.+++.. .+ ......+.... +++ +++ +++++..++. ..|| ++...+.
T Consensus 169 ~~~~l~s~s~D~--~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~-~l~sgs~D~~--v~~w--d~~~~~~ 240 (380)
T 3iz6_a 169 QETRLITGSGDQ--TCVLWDVTTGQRISIFGSEFPSGHTADVLSLS-INSLNAN-MFISGSCDTT--VRLW--DLRITSR 240 (380)
T ss_dssp SSSCEEEECTTS--CEEEECTTTCCEEEEECCCSSSSCCSCEEEEE-ECSSSCC-EEEEEETTSC--EEEE--ETTTTCC
T ss_pred CCCEEEEECCCC--cEEEEEcCCCcEEEEeecccCCCCccCeEEEE-eecCCCC-EEEEEECCCe--EEEE--ECCCCCc
Confidence 22344433333 4666776655432 22 11222344433 555 554 4555555442 5555 5521221
Q ss_pred CCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 227 HTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 227 ~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
....+... .....+.|+||++.|+-...+ ..+.+.|+.+++.+..+
T Consensus 241 ----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 241 ----AVRTYHGHEGDINSVKFFPDGQRFGTGSDD----GTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp ----CCEEECCCSSCCCEEEECTTSSEEEEECSS----SCEEEEETTTTEEEEEE
T ss_pred ----ceEEECCcCCCeEEEEEecCCCeEEEEcCC----CeEEEEECCCCcEEEEe
Confidence 23334332 236777999999887544322 36888898888765544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0013 Score=62.74 Aligned_cols=139 Identities=10% Similarity=0.021 Sum_probs=78.2
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECC--CC-ce---EEEEEe
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TG-QR---KVILVE 131 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~--~g-~~---~~l~~~ 131 (550)
...|+.++ +++.+.+... ......++|||||+.+++.... ...|++++.+ +| +. +.+...
T Consensus 160 ~~~l~~~~--~g~~~~~~~~---------~~~~~~i~~s~dg~~lyv~~~~---~~~I~~~d~~~~~Gl~~~~~~~~~~~ 225 (326)
T 2ghs_A 160 AGSIYHVA--KGKVTKLFAD---------ISIPNSICFSPDGTTGYFVDTK---VNRLMRVPLDARTGLPTGKAEVFIDS 225 (326)
T ss_dssp CEEEEEEE--TTEEEEEEEE---------ESSEEEEEECTTSCEEEEEETT---TCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred ceEEEEEe--CCcEEEeeCC---------CcccCCeEEcCCCCEEEEEECC---CCEEEEEEcccccCCcccCceEEEEC
Confidence 35788888 4665544211 1123568999999977666432 2358888875 66 42 223221
Q ss_pred ecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEe-ecCCEEEEEEcCCC
Q 008873 132 ELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVN-EASGQVYFTGTLDG 210 (550)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s-~dg~~l~f~~~~~~ 210 (550)
....+.+.. ...++++-+|++... ...|++++.++...+.++.+...+..+. ++ +|++.||++....+
T Consensus 226 ~~~~~~p~g---------i~~d~~G~lwva~~~-~~~v~~~d~~g~~~~~i~~~~~~~~~~a-f~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 226 TGIKGGMDG---------SVCDAEGHIWNARWG-EGAVDRYDTDGNHIARYEVPGKQTTCPA-FIGPDASRLLVTSAREH 294 (326)
T ss_dssp TTSSSEEEE---------EEECTTSCEEEEEET-TTEEEEECTTCCEEEEEECSCSBEEEEE-EESTTSCEEEEEEBCTT
T ss_pred CCCCCCCCe---------eEECCCCCEEEEEeC-CCEEEEECCCCCEEEEEECCCCCcEEEE-EecCCCCEEEEEecCCC
Confidence 111111110 123455555655432 2468999987665555654433344444 77 88889998887643
Q ss_pred ---------CceeEEEEEEe
Q 008873 211 ---------PLESHLYCAKL 221 (550)
Q Consensus 211 ---------~~~~~l~~v~~ 221 (550)
+..-.||++++
T Consensus 295 ~~~~~~~~~p~~g~~~~~~~ 314 (326)
T 2ghs_A 295 LDDDAITANPQHGLTFELGI 314 (326)
T ss_dssp CCHHHHHHCTTTTCEEECSS
T ss_pred CChhHhccCCCCceEEEEeC
Confidence 22235777765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0029 Score=59.54 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=94.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCC-CeEEEEEEecCCCceEEEEEECCCCceEEE-EEeecCcee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHG-NILTAQVLNRSQTKLKVLKFDIKTGQRKVI-LVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspD-g~~i~~~~~r~~~~~~l~~~~~~~g~~~~l-~~~~~~~~~ 137 (550)
.|+++|.++++.+.+..... .........+.+++| |++++... . ..|++++.+ |+.+.+ .......
T Consensus 47 ~i~~~d~~~g~~~~~~~~~~----~~~~~~~~~i~~~~~~g~l~v~~~--~---~~l~~~d~~-g~~~~~~~~~~~~~-- 114 (314)
T 1pjx_A 47 EILRIDLKTGKKTVICKPEV----NGYGGIPAGCQCDRDANQLFVADM--R---LGLLVVQTD-GTFEEIAKKDSEGR-- 114 (314)
T ss_dssp EEEEECTTTCCEEEEECCEE----TTEECCEEEEEECSSSSEEEEEET--T---TEEEEEETT-SCEEECCSBCTTSC--
T ss_pred EEEEEeCCCCcEEEEEeccc----CCCCCCCceEEEecCCCcEEEEEC--C---CCEEEEeCC-CCEEEEEeccCCCc--
Confidence 57888988888766543100 001134567889999 87554332 1 149999998 876654 3211100
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCC--------------ccEEEEEeCCCceeecccccCeEEEEEEeEe----ecC
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTG--------------FRHLYLHDINGTCLGPITEGDWMVEQIVGVN----EAS 199 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g--------------~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s----~dg 199 (550)
+...+ .....++++-+|+++... ...||+++.+ ++.+.+..+......+ .++ +||
T Consensus 115 ---~~~~~--~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i-~~~~~~d~dg 187 (314)
T 1pjx_A 115 ---RMQGC--NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGI-AVRHMNDGRP 187 (314)
T ss_dssp ---BCBCC--CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEE-EEEECTTSCE
T ss_pred ---cccCC--cCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceE-EEecccCCCC
Confidence 00000 001234555444444321 2579999977 4444443221112333 488 898
Q ss_pred CEEEEEEcCCCCceeEEEEEEeCCCCCCCCC-CCeeeCCC--CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 200 GQVYFTGTLDGPLESHLYCAKLYPDWNHTLE-APVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 200 ~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~-~~~~lt~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
+.||+.....+ .|+++++..++..... ....+... .....+.++++|..++.... ...|++++..+++.
T Consensus 188 ~~l~v~~~~~~----~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~----~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 188 YQLIVAETPTK----KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG----SSHIEVFGPDGGQP 259 (314)
T ss_dssp EEEEEEETTTT----EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET----TTEEEEECTTCBSC
T ss_pred CEEEEEECCCC----eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC----CCEEEEEcCCCCcE
Confidence 88888765432 5666665212210000 00111111 12445678888865443322 23788887754553
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0042 Score=61.75 Aligned_cols=157 Identities=11% Similarity=0.018 Sum_probs=82.4
Q ss_pred eeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCce--EEE---EEee-cCceeeccCccccCCCCCccCC-Cc-EEE
Q 008873 89 YLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQR--KVI---LVEE-LDSWVNLHDCFTPLDKGVTKYS-GG-FIW 159 (550)
Q Consensus 89 ~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~--~~l---~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 159 (550)
.+..++|+|+++ .++...... .|.+.++.++.. ..+ .... ....+.. . .|++ ++ +++
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~---v-------~~~p~~~~~l~ 248 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDH----TICLWDINATPKEHRVIDAKNIFTGHTAVVED---V-------AWHLLHESLFG 248 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTS----CEEEEETTSCCBGGGEEECSEEECCCSSCEEE---E-------EECSSCTTEEE
T ss_pred CeEEEEeCCCCCCeEEEEeCCC----eEEEEeCCCCCCCCceeccceeecCCCCCEee---e-------EEeCCCCCEEE
Confidence 456789999998 666654332 266677766321 111 1110 0000100 1 2333 23 444
Q ss_pred EEccCCccEEEEEeCCCce----eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee
Q 008873 160 ASEKTGFRHLYLHDINGTC----LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL 235 (550)
Q Consensus 160 ~s~~~g~~~l~~~~~~~~~----~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l 235 (550)
....+| .|.++++..+. ...+....-.+..+ .|+|+++.+++++..++ .|...++...+. ....+
T Consensus 249 s~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~v~~i-~~~p~~~~~l~tg~~dg----~v~vwd~~~~~~----~~~~~ 317 (430)
T 2xyi_A 249 SVADDQ--KLMIWDTRNNNTSKPSHTVDAHTAEVNCL-SFNPYSEFILATGSADK----TVALWDLRNLKL----KLHSF 317 (430)
T ss_dssp EEETTS--EEEEEETTCSCSSSCSEEEECCSSCEEEE-EECSSCTTEEEEEETTS----EEEEEETTCTTS----CSEEE
T ss_pred EEeCCC--eEEEEECCCCCCCcceeEeecCCCCeEEE-EeCCCCCCEEEEEeCCC----eEEEEeCCCCCC----CeEEe
Confidence 433334 57777765542 22232233334544 49999988887777664 344446621121 23444
Q ss_pred CC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 236 TN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 236 t~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
.. ......+.|+|+++.++++.+.- ..+.+.++..
T Consensus 318 ~~h~~~v~~i~~sp~~~~~l~s~~~d---~~i~iwd~~~ 353 (430)
T 2xyi_A 318 ESHKDEIFQVQWSPHNETILASSGTD---RRLHVWDLSK 353 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETT---SCCEEEEGGG
T ss_pred ecCCCCEEEEEECCCCCCEEEEEeCC---CcEEEEeCCC
Confidence 43 33477789999998766665432 3567777754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=97.71 E-value=0.016 Score=55.93 Aligned_cols=104 Identities=12% Similarity=-0.010 Sum_probs=59.2
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEe------cCCCceEEEEEECCCCceEEEEEeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN------RSQTKLKVLKFDIKTGQRKVILVEEL 133 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~------r~~~~~~l~~~~~~~g~~~~l~~~~~ 133 (550)
.++++|.++++... ++. . . ....+.+||||++++.... |......|..+|+++++...-.....
T Consensus 32 ~v~v~D~~t~~~~~-~i~-------~-g-~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 32 RVHVYDYTNGKFLG-MVP-------T-A-FNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp EEEEEETTTCCEEE-EEE-------C-C-EEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred eEEEEECCCCeEEE-Eec-------C-C-CCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 67899999887642 221 1 1 1227899999998876643 22223468899999887643222111
Q ss_pred Ccee-eccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee
Q 008873 134 DSWV-NLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL 179 (550)
Q Consensus 134 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~ 179 (550)
.... ...+. ....++|+ ++|+++...-..|.++|.++++.
T Consensus 102 ~~~~~g~~p~------~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 102 KRVQGLNYDG------LFRQTTDGKFIVLQNASPATSIGIVDVAKGDY 143 (361)
T ss_dssp TBCCBCCCGG------GEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred cccccCCCcc------eEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence 1000 00010 01234554 88887764346788888876643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0014 Score=61.59 Aligned_cols=156 Identities=12% Similarity=-0.011 Sum_probs=89.9
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccE
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRH 168 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 168 (550)
.-..|.|+|++..++++.... ..|++++.++++.+.+.. ... .. .+ .+++++-++++.. ..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~---~~i~~~d~~~~~~~~~~~-~~~--~~---~i-------~~~~dG~l~v~~~---~~ 74 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPA---KKVCRWDSFTKQVQRVTM-DAP--VS---SV-------ALRQSGGYVATIG---TK 74 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTT---TEEEEEETTTCCEEEEEC-SSC--EE---EE-------EEBTTSSEEEEET---TE
T ss_pred cccCCeEECCCCEEEEEECCC---CEEEEEECCCCcEEEEeC-CCc--eE---EE-------EECCCCCEEEEEC---Ce
Confidence 345689999877666654332 259999999988654322 111 00 01 1233332333332 46
Q ss_pred EEEEeCCCceeeccccc-----CeEEEEEEeEeecCCEEEEEEcCCC-------CceeEEEEEEeCCCCCCCCCCCeeeC
Q 008873 169 LYLHDINGTCLGPITEG-----DWMVEQIVGVNEASGQVYFTGTLDG-------PLESHLYCAKLYPDWNHTLEAPVKLT 236 (550)
Q Consensus 169 l~~~~~~~~~~~~lT~~-----~~~~~~~~~~s~dg~~l~f~~~~~~-------~~~~~l~~v~~~~~g~~~~~~~~~lt 236 (550)
|++++.++++.+.+... .....+. .++++|+ ||+...... .....||+++. ++. ...+.
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di-~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~--~g~-----~~~~~ 145 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDG-KVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFP--DHH-----VKKYF 145 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEE-EECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECT--TSC-----EEEEE
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCE-EECCCCC-EEEecCCcccccccccCCCcEEEEEEC--CCC-----EEEEe
Confidence 99999988877665432 1223444 4889987 777654221 12357998876 442 22322
Q ss_pred C-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc--CCCc
Q 008873 237 N-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL--QDGS 275 (550)
Q Consensus 237 ~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~--~~g~ 275 (550)
. ......+.|+||++.++++-+.. ..|+++++ .+|+
T Consensus 146 ~~~~~pngi~~spdg~~lyv~~~~~---~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 146 DQVDISNGLDWSLDHKIFYYIDSLS---YSVDAFDYDLQTGQ 184 (297)
T ss_dssp EEESBEEEEEECTTSCEEEEEEGGG---TEEEEEEECTTTCC
T ss_pred eccccccceEEcCCCCEEEEecCCC---CcEEEEeccCCCCc
Confidence 1 12245678999999876664432 47888876 4554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.013 Score=53.70 Aligned_cols=158 Identities=9% Similarity=0.042 Sum_probs=91.6
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCcc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFR 167 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~ 167 (550)
....++|+|+++.|++.. .. ...|++++.+++..+.+.... .. .+.+ + ..++ ++.+|+++. +..
T Consensus 37 ~~~gi~~d~~~~~ly~~d-~~--~~~I~~~~~~g~~~~~~~~~~-~~-~p~~--i-------a~d~~~~~lyv~d~-~~~ 101 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTD-IS--EPSIGRASLHGGEPTTIIRQD-LG-SPEG--I-------ALDHLGRTIFWTDS-QLD 101 (267)
T ss_dssp EEEEEEEETTTTEEEEEE-TT--TTEEEEEESSSCCCEEEECTT-CC-CEEE--E-------EEETTTTEEEEEET-TTT
T ss_pred cEEEEEEecCCCEEEEEE-CC--CCEEEEEecCCCCcEEEEECC-CC-CccE--E-------EEEecCCeEEEEEC-CCC
Confidence 345789999877666553 32 235999999887655443210 00 0000 1 1233 346666664 345
Q ss_pred EEEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC-C-CCceEEE
Q 008873 168 HLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-N-GKGKHVA 244 (550)
Q Consensus 168 ~l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt-~-~~~~~~~ 244 (550)
.|+++++++...+.+.... .....+ .++++++.||++..... ...|+++++ +|. ..+.+. . ...-..+
T Consensus 102 ~I~~~~~~g~~~~~~~~~~~~~P~~i-~vd~~~g~lyv~~~~~~--~~~I~~~~~--dg~----~~~~~~~~~~~~P~gi 172 (267)
T 1npe_A 102 RIEVAKMDGTQRRVLFDTGLVNPRGI-VTDPVRGNLYWTDWNRD--NPKIETSHM--DGT----NRRILAQDNLGLPNGL 172 (267)
T ss_dssp EEEEEETTSCSCEEEECSSCSSEEEE-EEETTTTEEEEEECCSS--SCEEEEEET--TSC----CCEEEECTTCSCEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCccEE-EEeeCCCEEEEEECCCC--CcEEEEEec--CCC----CcEEEEECCCCCCcEE
Confidence 7999998876544443222 112333 48888889998865321 247888887 554 223332 1 1224556
Q ss_pred EECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 245 VLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 245 ~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
+++++++.|+++-+.. ..|++++..+
T Consensus 173 a~d~~~~~lyv~d~~~---~~I~~~~~~g 198 (267)
T 1npe_A 173 TFDAFSSQLCWVDAGT---HRAECLNPAQ 198 (267)
T ss_dssp EEETTTTEEEEEETTT---TEEEEEETTE
T ss_pred EEcCCCCEEEEEECCC---CEEEEEecCC
Confidence 8899888876664432 4889999753
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0056 Score=58.33 Aligned_cols=188 Identities=12% Similarity=0.091 Sum_probs=96.9
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++|+++++.. .+.++.+... ......+.+ .+++ ++.. +.. ....|+++|+++++..........
T Consensus 106 ~v~~iD~~t~~~~~~i~~g~~~~~----~~~p~~i~~-~~~~-lyv~-~~~-~~~~v~viD~~t~~~~~~i~~g~~---- 173 (328)
T 3dsm_A 106 RIFIINPKTYEITGYIECPDMDME----SGSTEQMVQ-YGKY-VYVN-CWS-YQNRILKIDTETDKVVDELTIGIQ---- 173 (328)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTT----TCBCCCEEE-ETTE-EEEE-ECT-TCCEEEEEETTTTEEEEEEECSSC----
T ss_pred eEEEEECCCCeEEEEEEcCCcccc----CCCcceEEE-ECCE-EEEE-cCC-CCCEEEEEECCCCeEEEEEEcCCC----
Confidence 5788999988765 4544310000 001122345 3444 3333 221 123699999999876443221100
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCC---------ccEEEEEeCCCceee-cccc--cCeEEEEEEeEeecCCEEEEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTG---------FRHLYLHDINGTCLG-PITE--GDWMVEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g---------~~~l~~~~~~~~~~~-~lT~--~~~~~~~~~~~s~dg~~l~f~~ 206 (550)
+ . ....++++-+|++.... -..|+++|.++++.. .+.. +. ....+ .+++|++.||+..
T Consensus 174 --p----~--~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~-~p~~l-a~~~d~~~lyv~~ 243 (328)
T 3dsm_A 174 --P----T--SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGD-WPSEV-QLNGTRDTLYWIN 243 (328)
T ss_dssp --B----C--CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTC-CCEEE-EECTTSCEEEEES
T ss_pred --c----c--ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCC-CceeE-EEecCCCEEEEEc
Confidence 0 0 01224545344443322 258999998876643 3332 32 22333 4899999988763
Q ss_pred cCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEee-cCCCCCCEEEEEEcCCCceeEec
Q 008873 207 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFH-DSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 207 ~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~-s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
. .+++++.. .+.. .....++. ......+.++|+++.++.+. .+......+++++.. |+.++.+
T Consensus 244 ~-------~v~~~d~~-t~~~--~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 244 N-------DIWRMPVE-ADRV--PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp S-------SEEEEETT-CSSC--CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred c-------EEEEEECC-CCce--eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 2 57888872 2221 01111222 22356678999666655443 122234578998885 7755544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0044 Score=61.30 Aligned_cols=206 Identities=8% Similarity=0.060 Sum_probs=105.8
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++||-...+ ..|.+||+++++....-.
T Consensus 151 ~sv~fspdg~~lasgs~D------------------------------------g~v~iWd~~~~~~~~~~~-------- 186 (420)
T 4gga_A 151 SSVAWIKEGNYLAVGTSS------------------------------------AEVQLWDVQQQKRLRNMT-------- 186 (420)
T ss_dssp EEEEECTTSSEEEEEETT------------------------------------SCEEEEETTTTEEEEEEC--------
T ss_pred EEEEECCCCCEEEEEECC------------------------------------CeEEEEEcCCCcEEEEEe--------
Confidence 578899999988764332 125788999887543211
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 163 (550)
.....+..++| |++.++...... .+...+.........+-......+.. . .+.+++ ++.....
T Consensus 187 ~h~~~v~~~s~--~~~~l~sgs~d~----~i~~~d~~~~~~~~~~~~~h~~~~~~---~-------~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 187 SHSARVGSLSW--NSYILSSGSRSG----HIHHHDVRVAEHHVATLSGHSQEVCG---L-------RWAPDGRHLASGGN 250 (420)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTS----EEEEEETTSSSCEEEEEECCSSCEEE---E-------EECTTSSEEEEEET
T ss_pred CCCCceEEEee--CCCEEEEEeCCC----ceeEeeecccceeeEEecccccceee---e-------eecCCCCeeeeeec
Confidence 11233444444 666665543222 35666666544332221111110000 0 123333 4444434
Q ss_pred CCccEEEEEeCCCcee-----ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 164 TGFRHLYLHDINGTCL-----GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~-----~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
+|. +.+.+...++. .........+... .|+|++..++.++..... ..|...++. .+. ....+...
T Consensus 251 D~~--v~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~p~~~~~la~~~gs~D--~~I~iwd~~-t~~----~~~~~~~~ 320 (420)
T 4gga_A 251 DNL--VNVWPSAPGEGGWVPLQTFTQHQGAVKAV-AWCPWQSNVLATGGGTSD--RHIRIWNVC-SGA----CLSAVDAH 320 (420)
T ss_dssp TSC--EEEEESSCCSSCSCCSEEECCCSSCEEEE-EECTTCTTEEEEEECTTT--CEEEEEETT-TTE----EEEEEECS
T ss_pred ccc--ceEEeeccccccceeeeeecccCCceeee-eeCCCcccEEEEEeecCC--CEEEEEeCC-ccc----cceeeccc
Confidence 443 44445433321 1122223334444 488887777666542111 234444662 222 23333334
Q ss_pred CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
.......++++++.++......+ ..|.+.+..+++.+..+..
T Consensus 321 ~~v~~~~~~~~~~~lv~~sg~~d--~~I~iwd~~~~~~v~~l~g 362 (420)
T 4gga_A 321 SQVCSILWSPHYKELISGHGFAQ--NQLVIWKYPTMAKVAELKG 362 (420)
T ss_dssp SCEEEEEEETTTTEEEEEECTTT--CCEEEEETTTCCEEEEECC
T ss_pred cceeeeeecCCCCeEEEEEecCC--CEEEEEECCCCcEEEEEcC
Confidence 45667789999998876653322 3788889988887776654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0026 Score=68.34 Aligned_cols=203 Identities=14% Similarity=0.119 Sum_probs=106.8
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|||||++|+....+ ..|.+||+.++....+..-
T Consensus 12 V~~l~~s~dg~~latg~~d------------------------------------g~I~vwd~~~~~~~~~~~l------ 49 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCSSD------------------------------------KTIKIFEVEGETHKLIDTL------ 49 (753)
T ss_dssp EEEECCCSSSCCEEEEETT------------------------------------TEEEEEEEETTEEEEEEEE------
T ss_pred eEEEEECCCCCeEEEEECC------------------------------------CcEEEEecCCCCCccceec------
Confidence 3577899999988765332 1357778875543333211
Q ss_pred CCCCceeEEEEECCC--CeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-ceeeccCccccCCCCCccCCC--c-E
Q 008873 84 NYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGVTKYSG--G-F 157 (550)
Q Consensus 84 ~~~~~~~~~~~wspD--g~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~-~ 157 (550)
......+..++|+|+ |+.++...... .|.+.++.+++...+...... ..+.. . .++++ + +
T Consensus 50 ~~h~~~V~~l~~s~~~~~~~l~s~s~Dg----~I~vwd~~~~~~~~~~~~~~h~~~V~~---v-------~~sp~~~~~~ 115 (753)
T 3jro_A 50 TGHEGPVWRVDWAHPKFGTILASCSYDG----KVLIWKEENGRWSQIAVHAVHSASVNS---V-------QWAPHEYGPL 115 (753)
T ss_dssp CCCSSCEEEEEECCTTSCSEEEEEETTS----CEEEEEEETTEEEEEEEECCCSSCEEE---E-------EECCGGGCSE
T ss_pred cCCcCceEEEEecCCCCCCEEEEEeCCC----eEEEEECCCCcccccccccCCCCCeEE---E-------EECCCCCCCE
Confidence 223456888999998 88887776443 266666777764444332211 11100 1 12333 3 5
Q ss_pred EEEEccCCccEEEEEeCCCce---eecccccCeEEEEEEeEee-------------cCCEEEEEEcCCCCceeEEEEEEe
Q 008873 158 IWASEKTGFRHLYLHDINGTC---LGPITEGDWMVEQIVGVNE-------------ASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 158 ~~~s~~~g~~~l~~~~~~~~~---~~~lT~~~~~~~~~~~~s~-------------dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
++....+| .|.+++..++. ...+......+.... |+| +++.|+..+. ++ ...+|.+..
T Consensus 116 l~sgs~dg--~I~vwdl~~~~~~~~~~~~~~~~~v~~l~-~~p~~~~~~~~~~~~~d~~~l~sgs~-dg--~I~iwd~~~ 189 (753)
T 3jro_A 116 LLVASSDG--KVSVVEFKENGTTSPIIIDAHAIGVNSAS-WAPATIEEDGEHNGTKESRKFVTGGA-DN--LVKIWKYNS 189 (753)
T ss_dssp EEEEETTS--EEEEEECCSSSCCCCEEEECCSSCEEEEE-ECCCC---------CGGGCCEEEEET-TS--CEEEEEEET
T ss_pred EEEEeCCC--cEEEEEeecCCCcceeEeecCCCceEEEE-ecCcccccccccccCCCCCEEEEEEC-CC--eEEEEeccC
Confidence 55544445 46666655442 222333333444443 777 4665555444 33 256665543
Q ss_pred CCCCCCCCCCCeeeCC-CCceEEEEECCC---CCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 222 YPDWNHTLEAPVKLTN-GKGKHVAVLDHN---MRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 222 ~~~g~~~~~~~~~lt~-~~~~~~~~~s~d---g~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
... .......+.. ......+.|+|+ ++.++....+ ..+.+.++.+++
T Consensus 190 --~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D----g~I~iwd~~~~~ 240 (753)
T 3jro_A 190 --DAQ-TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD----RTCIIWTQDNEQ 240 (753)
T ss_dssp --TTT-EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS----SCEEEEEESSSS
T ss_pred --Ccc-cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC----CEEEEecCCCCC
Confidence 211 0001122222 233677799999 6665544332 357777776653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0026 Score=60.68 Aligned_cols=181 Identities=7% Similarity=-0.040 Sum_probs=98.3
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++|.++++.. .+.. ......++++|||+ ++ +.+.. ...|+++|+++++..........
T Consensus 65 ~v~viD~~t~~~~~~i~~----------~~~p~~i~~~~~g~-ly-v~~~~--~~~v~~iD~~t~~~~~~i~~g~~---- 126 (328)
T 3dsm_A 65 VIFAIDINTFKEVGRITG----------FTSPRYIHFLSDEK-AY-VTQIW--DYRIFIINPKTYEITGYIECPDM---- 126 (328)
T ss_dssp EEEEEETTTCCEEEEEEC----------CSSEEEEEEEETTE-EE-EEEBS--CSEEEEEETTTTEEEEEEECTTC----
T ss_pred EEEEEECcccEEEEEcCC----------CCCCcEEEEeCCCe-EE-EEECC--CCeEEEEECCCCeEEEEEEcCCc----
Confidence 5778888887763 4422 12234577899995 33 33321 23599999999886532221110
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCC------
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGP------ 211 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~------ 211 (550)
....-.|. .... .++.+|+++.+.-..|+++|+++++.. .+..+.. .... .++++|+ +|+.......
T Consensus 127 ~~~~~~p~--~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i-~~~~dG~-l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 127 DMESGSTE--QMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-PTSL-VMDKYNK-MWTITDGGYEGSPYGY 200 (328)
T ss_dssp CTTTCBCC--CEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC-BCCC-EECTTSE-EEEEBCCBCTTCSSCB
T ss_pred cccCCCcc--eEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC-ccce-EEcCCCC-EEEEECCCccCCcccc
Confidence 00000010 0012 234566665422457999998776543 3433321 1222 3778875 7777654310
Q ss_pred ceeEEEEEEeCCCCCCCCCCCeeeCC--CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 212 LESHLYCAKLYPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 212 ~~~~l~~v~~~~~g~~~~~~~~~lt~--~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
....|++++.. .+. ....+.. +.....++++||++.++++- + .++++|..+++
T Consensus 201 ~~~~v~~id~~-t~~----v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~-----~v~~~d~~t~~ 255 (328)
T 3dsm_A 201 EAPSLYRIDAE-TFT----VEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N-----DIWRMPVEADR 255 (328)
T ss_dssp CCCEEEEEETT-TTE----EEEEEECCTTCCCEEEEECTTSCEEEEES-S-----SEEEEETTCSS
T ss_pred CCceEEEEECC-CCe----EEEEEecCCCCCceeEEEecCCCEEEEEc-c-----EEEEEECCCCc
Confidence 01478999972 221 1223332 22456778999998876542 2 78999987776
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.019 Score=54.51 Aligned_cols=196 Identities=9% Similarity=0.044 Sum_probs=101.6
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc--eEEEEEeecCce
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ--RKVILVEELDSW 136 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~--~~~l~~~~~~~~ 136 (550)
..|+++|.++++.....-. ..-.....++++|||++++ . +.. ...|++++.++.. ...+......+.
T Consensus 69 ~~i~~~d~~~g~~~~~~~~-------~~~~~p~gia~d~~g~l~v-~-d~~--~~~v~~~~~~g~~~~~~~~~~~~~~g~ 137 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK-------NLFYLPHGLSIDTDGNYWV-T-DVA--LHQVFKLDPHSKEGPLLILGRSMQPGS 137 (329)
T ss_dssp CCEEEECTTTCCEEEEECT-------TTCSSEEEEEECTTSCEEE-E-ETT--TTEEEEECTTCSSCCSEEESBTTBCCC
T ss_pred CcEEEEECCCCeEEeccCC-------CccCCceEEEECCCCCEEE-E-ECC--CCEEEEEeCCCCeEEEEEecccCCCCC
Confidence 4689999998887543210 1112345688999999443 2 222 2258899987652 233211000000
Q ss_pred eeccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCceeecccc-c--------CeE-EEEEEeEeecCCEEEEE
Q 008873 137 VNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITE-G--------DWM-VEQIVGVNEASGQVYFT 205 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~-~--------~~~-~~~~~~~s~dg~~l~f~ 205 (550)
. ......| .....++ ++.+|+++..+...|++++.++...+.+.. + ... ...+ .++++++.||++
T Consensus 138 ~-~~~~~~P--~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gi-a~d~~~g~l~v~ 213 (329)
T 3fvz_A 138 D-QNHFCQP--TDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSL-ALVPHLDQLCVA 213 (329)
T ss_dssp S-TTCCSSE--EEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEE-EEETTTTEEEEE
T ss_pred C-ccccCCC--cEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEE-EEECCCCEEEEE
Confidence 0 0000001 1113455 566777774345689999977765544431 1 111 2333 488887788888
Q ss_pred EcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC---CCceEEEEECCCCCEEEEeecC----CCCCCEEEEEEcCCCceeE
Q 008873 206 GTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN---GKGKHVAVLDHNMRNFVDFHDS----LDSPPRILLCSLQDGSLVL 278 (550)
Q Consensus 206 ~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~---~~~~~~~~~s~dg~~l~~~~s~----~~~p~~l~~~~~~~g~~~~ 278 (550)
....+ .|.+++.. +|. ....+.. +.....+.++| + .++..... ......+++++..+|+.+.
T Consensus 214 d~~~~----~I~~~~~~-~G~----~~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 214 DRENG----RIQCFKTD-TKE----FVREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp ETTTT----EEEEEETT-TCC----EEEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEE
T ss_pred ECCCC----EEEEEECC-CCc----EEEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEE
Confidence 66543 56667762 243 2233321 22345567778 3 22222211 1223478888888887655
Q ss_pred ec
Q 008873 279 PL 280 (550)
Q Consensus 279 ~l 280 (550)
.+
T Consensus 283 ~~ 284 (329)
T 3fvz_A 283 VF 284 (329)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.01 Score=62.99 Aligned_cols=162 Identities=12% Similarity=0.112 Sum_probs=87.7
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
...+..++|||||++++...... .|.+.++.+++...... +..... . . .+++++ +++....+
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs~Dg----~v~vwd~~~~~~~~~~~~h~~~v~-~----~-------~~s~~~~~l~s~s~D 493 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGSWDG----ELRLWDLAAGVSTRRFVGHTKDVL-S----V-------AFSLDNRQIVSASRD 493 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECCSSCEE-E----E-------EECTTSSCEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCC----cEEEEECCCCcceeEEeCCCCCEE-E----E-------EEeCCCCEEEEEeCC
Confidence 45678899999999887765432 37777888887644332 222111 0 1 233433 44444344
Q ss_pred CccEEEEEeCCCceeecccc----cCeEEEEEEeEeecCC-EEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-
Q 008873 165 GFRHLYLHDINGTCLGPITE----GDWMVEQIVGVNEASG-QVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG- 238 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~----~~~~~~~~~~~s~dg~-~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~- 238 (550)
+ .|.+.+..+.....+.. ..-.+... .|++++. .+++++..++. ..+| ++. .+. ....+...
T Consensus 494 ~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~l~s~s~d~~--v~vw--d~~-~~~----~~~~~~~h~ 561 (694)
T 3dm0_A 494 R--TIKLWNTLGECKYTISEGGEGHRDWVSCV-RFSPNTLQPTIVSASWDKT--VKVW--NLS-NCK----LRSTLAGHT 561 (694)
T ss_dssp S--CEEEECTTSCEEEEECSSTTSCSSCEEEE-EECSCSSSCEEEEEETTSC--EEEE--ETT-TCC----EEEEECCCS
T ss_pred C--EEEEEECCCCcceeeccCCCCCCCcEEEE-EEeCCCCcceEEEEeCCCe--EEEE--ECC-CCc----EEEEEcCCC
Confidence 4 35555655543333321 12224444 4888873 35555555542 4555 552 221 12333332
Q ss_pred CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.....+.|+|||+.|+....+ ..+.+.|+.+++.+..+
T Consensus 562 ~~v~~v~~spdg~~l~sg~~D----g~i~iwd~~~~~~~~~~ 599 (694)
T 3dm0_A 562 GYVSTVAVSPDGSLCASGGKD----GVVLLWDLAEGKKLYSL 599 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETT----SBCEEEETTTTEEEECC
T ss_pred CCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCceEEEe
Confidence 236777999999977644333 36788888877654433
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0034 Score=58.68 Aligned_cols=178 Identities=10% Similarity=-0.003 Sum_probs=94.2
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEe-------------cCCCceEEEEEECCCCceE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN-------------RSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~-------------r~~~~~~l~~~~~~~g~~~ 126 (550)
.|+++|.++++.+.+..... .........++++|||++++.... .......||.++.+ |+.+
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFE----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS 165 (296)
T ss_dssp EEEEECSTTCCEEEEECEET----TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE
T ss_pred eEEEEcCCCCcEEEEeeccC----CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE
Confidence 57888888887765532100 000112345789999986654221 01123479999988 7766
Q ss_pred EEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCC-Ccee----ecccccCeEEEEEEeEeecCC
Q 008873 127 VILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDIN-GTCL----GPITEGDWMVEQIVGVNEASG 200 (550)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~-~~~~----~~lT~~~~~~~~~~~~s~dg~ 200 (550)
.+..... ... ...+++++ ++ +++. +...|++++.+ .++. +.+.........+ .++++|+
T Consensus 166 ~~~~~~~--~~~----------gi~~s~dg~~l-v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i-~~d~~G~ 230 (296)
T 3e5z_A 166 APIRDRV--KPN----------GLAFLPSGNLL-VSDT-GDNATHRYCLNARGETEYQGVHFTVEPGKTDGL-RVDAGGL 230 (296)
T ss_dssp EEECCCS--SEE----------EEEECTTSCEE-EEET-TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE-EEBTTSC
T ss_pred EeecCCC--CCc----------cEEECCCCCEE-EEeC-CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE-EECCCCC
Confidence 5532211 100 01245554 55 5543 23468888764 2332 2221111111223 4788885
Q ss_pred EEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEE-CCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 201 QVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVL-DHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 201 ~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~-s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
||+.. . ..|++++. +|. ....+....+..++.| ++|++.|+++..+ .++.++..+++
T Consensus 231 -l~v~~--~----~~v~~~~~--~g~----~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-----~l~~~~~~~~~ 288 (296)
T 3e5z_A 231 -IWASA--G----DGVHVLTP--DGD----ELGRVLTPQTTSNLCFGGPEGRTLYMTVST-----EFWSIETNVRG 288 (296)
T ss_dssp -EEEEE--T----TEEEEECT--TSC----EEEEEECSSCCCEEEEESTTSCEEEEEETT-----EEEEEECSCCB
T ss_pred -EEEEc--C----CeEEEECC--CCC----EEEEEECCCCceeEEEECCCCCEEEEEcCC-----eEEEEEccccc
Confidence 66665 2 25777776 443 2334443333555677 6899887666433 79998886554
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00022 Score=71.57 Aligned_cols=115 Identities=17% Similarity=0.073 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh-hccCC----CchHHHHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK-HNCGR----IDAEDQLTGAEW 402 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~-~~~~~----~~~~D~~~~~~~ 402 (550)
-|++|++-|. +... .+...-..+.++..+.|-.+|.+.+|-.|.|-.--..... .++.. ..+.|+...+++
T Consensus 43 gPIfl~~gGE-g~~~---~~~~~~g~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~st~~~nL~yLt~eQALaD~a~fi~~ 118 (472)
T 4ebb_A 43 GPIFFYTGNE-GDVW---AFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRA 118 (472)
T ss_dssp CCEEEEECCS-SCHH---HHHHHCHHHHHHHHHHTCEEEEECCTTSTTCCTTGGGGGSTTSCTTCSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCC-cccc---ccccCccHHHHHHHHhCCeEEEEecccccCCcCCCCCCccccccccCCHHHHHHHHHHHHHH
Confidence 4888887442 2211 1111112234455577999999999988876431111111 12222 247788888888
Q ss_pred HHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 403 LIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 403 l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
+.+.......+++++|.||||.+++++-.++|++|.++++.+++
T Consensus 119 ~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSAp 162 (472)
T 4ebb_A 119 LRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAP 162 (472)
T ss_dssp HHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred HHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccc
Confidence 87764455678999999999999999999999999888887654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.037 Score=53.16 Aligned_cols=197 Identities=12% Similarity=0.081 Sum_probs=106.2
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
-.++.|||||++||....+ .+.+||+++++......
T Consensus 22 V~~v~fs~dg~~la~g~~~-------------------------------------~~~iw~~~~~~~~~~~~------- 57 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILSTLK-------------------------------------SFEIYNVHPVAHIMSQE------- 57 (355)
T ss_dssp CCEEEECTTSSEEEEECSS-------------------------------------EEEEEEETTEEEEEEEE-------
T ss_pred eEEEEECCCCCEEEEEcCC-------------------------------------EEEEEecCCcceeeeee-------
Confidence 3678999999988764211 13467777654432211
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEcc
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEK 163 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 163 (550)
...+....|++++..++++..... .|.+.|..+|+............ . . .++++.++...+
T Consensus 58 ---~~~~~~~~~~~~~~~~~~~~~~d~---~v~iWd~~~~~~~~~~~~~~~v~-~----v-------~~~~~~~~~~~~- 118 (355)
T 3vu4_A 58 ---MRHLSKVRMLHRTNYVAFVTGVKE---VVHIWDDVKKQDVSRIKVDAPVK-D----L-------FLSREFIVVSYG- 118 (355)
T ss_dssp ---CSCCCEEEECTTSSEEEEECSSTT---EEEEEETTTTEEEEEEECSSCEE-E----E-------EECSSEEEEEET-
T ss_pred ---cCCeEEEEEcCCCCEEEEEECCcc---EEEEEECCCCcEEEEEECCCceE-E----E-------EEcCCEEEEEEc-
Confidence 012445688999887766543322 47777888887644333222100 0 1 124555554443
Q ss_pred CCccEEEEEeCCCc--eeecccccCeEEEEEEeEeecCCEEEEE-EcCCCCceeEEEEEEeCCCCCC-----C------C
Q 008873 164 TGFRHLYLHDINGT--CLGPITEGDWMVEQIVGVNEASGQVYFT-GTLDGPLESHLYCAKLYPDWNH-----T------L 229 (550)
Q Consensus 164 ~g~~~l~~~~~~~~--~~~~lT~~~~~~~~~~~~s~dg~~l~f~-~~~~~~~~~~l~~v~~~~~g~~-----~------~ 229 (550)
..|++++..++ ....+.. ......+++ +.+++. +..++ ...+| ++. .+.. . .
T Consensus 119 ---~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g--~v~iw--d~~-~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 119 ---DVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLG--QIHIT--KLQ-SSGSATTQDQGVQQKAI 184 (355)
T ss_dssp ---TEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTT--CEEEE--ECC-C----------------
T ss_pred ---CEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCc--EEEEE--ECC-CCCcccccccccccccc
Confidence 35788887665 2223322 222334565 677776 34443 25555 442 1110 0 0
Q ss_pred CC-CeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCE-EEEEEcCCCceeEecc
Q 008873 230 EA-PVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPR-ILLCSLQDGSLVLPLY 281 (550)
Q Consensus 230 ~~-~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~-l~~~~~~~g~~~~~l~ 281 (550)
.. ...+... .....+.|+|||++|+-...+ .. +.+.|+.+++.+..+.
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d----~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD----GTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp --CCEEECCCSSCEEEEEECTTSSEEEEEETT----CSEEEEEETTTCCEEEEEE
T ss_pred CcccEEEEccCCceEEEEECCCCCEEEEEeCC----CCEEEEEECCCCcEEEEEE
Confidence 00 2334332 236777999999877544332 34 8888998888766665
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.013 Score=56.36 Aligned_cols=182 Identities=12% Similarity=0.117 Sum_probs=106.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+.+++++.+...+.. .......++|.+++..|+++ +... ..|++++++++..+.+......
T Consensus 54 ~I~~i~~~g~~~~~~~~---------~~~~~~~l~~d~~~~~ly~~-D~~~--~~I~r~~~~g~~~~~~~~~~~~----- 116 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLN---------NLENAIALDFHHRRELVFWS-DVTL--DRILRANLNGSNVEEVVSTGLE----- 116 (349)
T ss_dssp CEEEECTTSCCEEEEEC---------SCSCEEEEEEETTTTEEEEE-ETTT--TEEEEEETTSCSCEEEECSSCS-----
T ss_pred ceEEEeCCCCeeEEeec---------CCCceEEEEEeccccEEEEE-eccC--CceEEEecCCCCceEEEeCCCC-----
Confidence 36777887766554421 12235678999877766554 3322 2599999998876655432100
Q ss_pred cCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.|. ....+. ++.+|+++. +...|++++++|...+.+..... ...++ .++|+++.||++-... ...|+
T Consensus 117 ----~p~--glavd~~~g~ly~~d~-~~~~I~~~~~dG~~~~~l~~~~l~~P~~i-avdp~~g~ly~td~~~---~~~I~ 185 (349)
T 3v64_C 117 ----SPG--GLAVDWVHDKLYWTDS-GTSRIEVANLDGAHRKVLLWQSLEKPRAI-ALHPMEGTIYWTDWGN---TPRIE 185 (349)
T ss_dssp ----CCC--EEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECTTCSCEEEE-EEETTTTEEEEEECSS---SCEEE
T ss_pred ----Ccc--EEEEecCCCeEEEEcC-CCCeEEEEcCCCCceEEEEeCCCCCcceE-EEecCcCeEEEeccCC---CCEEE
Confidence 000 001121 335555554 34589999998876555543322 22344 3888888999986543 25799
Q ss_pred EEEeCCCCCCCCCCCeeeCCC--CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEe
Q 008873 218 CAKLYPDWNHTLEAPVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 279 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~ 279 (550)
+++. +|. ..+.+... ..-..++++++++.|.++-+. ...|++++.. |+..+.
T Consensus 186 r~~~--dG~----~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~---~~~I~~~~~d-G~~~~~ 239 (349)
T 3v64_C 186 ASSM--DGS----GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK---HHVIERANLD-GSHRKA 239 (349)
T ss_dssp EEET--TSC----SCEESCCSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEETT-SCSCEE
T ss_pred EEeC--CCC----CcEEEEECCCCCcceEEEeCCCCEEEEEECC---CCEEEEEeCC-CCceEE
Confidence 9998 664 23333221 124566899888888766443 2489999974 443333
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.014 Score=56.94 Aligned_cols=55 Identities=20% Similarity=-0.009 Sum_probs=34.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCC---eEEEEEEecCCCceEEEEEECCCCceEE
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGN---ILTAQVLNRSQTKLKVLKFDIKTGQRKV 127 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg---~~i~~~~~r~~~~~~l~~~~~~~g~~~~ 127 (550)
.|.+||+.+++...... ....+..+.|+|++ ..++...... .|.+.++.+++...
T Consensus 123 ~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFN---------FEETVYSHHMSPVSTKHCLVAVGTRGP----KVQLCDLKSGSCSH 180 (408)
T ss_dssp EEEEEETTTTEEEEEEE---------CSSCEEEEEECSSCSSCCEEEEEESSS----SEEEEESSSSCCCE
T ss_pred eEEEeeCCCCccceecc---------CCCceeeeEeecCCCCCcEEEEEcCCC----eEEEEeCCCcceee
Confidence 47889999887654311 13345677888854 3665554332 37888888877543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0093 Score=58.23 Aligned_cols=183 Identities=11% Similarity=0.119 Sum_probs=106.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+.+++++++...+.. .......++|.+++..|+++ +... ..|++++++++..+.+......
T Consensus 97 ~I~~i~~~~~~~~~~~~---------~~~~~~gl~~d~~~~~ly~~-D~~~--~~I~r~~~~g~~~~~~~~~~~~----- 159 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLN---------NLENAIALDFHHRRELVFWS-DVTL--DRILRANLNGSNVEEVVSTGLE----- 159 (386)
T ss_dssp CEEEECTTSCCCEEEEC---------SCSCEEEEEEETTTTEEEEE-ETTT--TEEEEEETTSCCEEEEECSSCS-----
T ss_pred cceeeccCCCcEEEEec---------CCCccEEEEEecCCCeEEEE-eCCC--CcEEEEecCCCCcEEEEeCCCC-----
Confidence 46777777766554422 12235678999877666554 3332 3599999998876655432100
Q ss_pred cCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.|. ....+. ++.+|+++. +...|++++++|+..+.+..... ...++. ++|+++.||++-... ...|+
T Consensus 160 ----~p~--glavd~~~g~lY~~d~-~~~~I~~~~~dg~~~~~l~~~~l~~P~gia-vdp~~g~ly~td~~~---~~~I~ 228 (386)
T 3v65_B 160 ----SPG--GLAVDWVHDKLYWTDS-GTSRIEVANLDGAHRKVLLWQSLEKPRAIA-LHPMEGTIYWTDWGN---TPRIE 228 (386)
T ss_dssp ----CCC--CEEEETTTTEEEEEET-TTTEEEECBTTSCSCEEEECSSCSCEEEEE-EETTTTEEEEEECSS---SCEEE
T ss_pred ----Ccc--EEEEEeCCCeEEEEcC-CCCeEEEEeCCCCceEEeecCCCCCCcEEE-EEcCCCeEEEeccCC---CCEEE
Confidence 000 001122 335555554 34579999988876555443322 223443 888888999986543 25799
Q ss_pred EEEeCCCCCCCCCCCeeeCCC--CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 218 CAKLYPDWNHTLEAPVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
+++. +|. ..+.+... ..-..++++++++.|+++-+. ...|++++.. |+..+.+
T Consensus 229 r~~~--dG~----~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~---~~~I~~~d~d-G~~~~~~ 283 (386)
T 3v65_B 229 ASSM--DGS----GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK---HHVIERANLD-GSHRKAV 283 (386)
T ss_dssp EEET--TSC----SCEEEECSSCSCEEEEEEEGGGTEEEEEETT---TTEEEEECTT-SCSCEEE
T ss_pred EEeC--CCC----CcEEEEECCCCCeeeEEEeCCCCEEEEEECC---CCEEEEEeCC-CCeeEEE
Confidence 9998 664 23333222 124566889888887766433 2489998874 4433333
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.014 Score=52.72 Aligned_cols=171 Identities=9% Similarity=0.017 Sum_probs=96.0
Q ss_pred eEEEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCce
Q 008873 58 KVRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSW 136 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~ 136 (550)
.+.|.++|+++++.. .+.++ ..+ .....+++|..|+.+..+. ..++++|.++.+...=..-...+|
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l~---------~~~-FgeGit~~g~~ly~ltw~~---~~v~v~D~~t~~~~~ti~~~~eG~ 130 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIELG---------KRY-FGEGISDWKDKIVGLTWKN---GLGFVWNIRNLRQVRSFNYDGEGW 130 (262)
T ss_dssp EEEEEEECTTTCCEEEEEECC---------TTC-CEEEEEEETTEEEEEESSS---SEEEEEETTTCCEEEEEECSSCCC
T ss_pred CceEEEEECCCCcEEEEEecC---------Ccc-ceeEEEEeCCEEEEEEeeC---CEEEEEECccCcEEEEEECCCCce
Confidence 367899999999875 44432 111 1122344666666665443 359999999988643222222333
Q ss_pred eeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCce-eecccc--cCeEE---EEEEeEeecCCEEEEEEcCCC
Q 008873 137 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITE--GDWMV---EQIVGVNEASGQVYFTGTLDG 210 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~-~~~lT~--~~~~~---~~~~~~s~dg~~l~f~~~~~~ 210 (550)
-- +.+ ++.+|.|+. -..|+.+|+++.+ .+.++- +...+ ... .|. +| .||......
T Consensus 131 gl------------t~d-g~~L~~SdG--s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL-e~~-~G-~lyan~w~~- 191 (262)
T 3nol_A 131 GL------------THN-DQYLIMSDG--TPVLRFLDPESLTPVRTITVTAHGEELPELNEL-EWV-DG-EIFANVWQT- 191 (262)
T ss_dssp CE------------EEC-SSCEEECCS--SSEEEEECTTTCSEEEEEECEETTEECCCEEEE-EEE-TT-EEEEEETTS-
T ss_pred EE------------ecC-CCEEEEECC--CCeEEEEcCCCCeEEEEEEeccCCcccccccee-EEE-CC-EEEEEEccC-
Confidence 11 112 246778873 4689999987644 333332 22221 122 244 55 677554332
Q ss_pred CceeEEEEEEeCCCCCCCCCCCeeeCC-------------CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 211 PLESHLYCAKLYPDWNHTLEAPVKLTN-------------GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 211 ~~~~~l~~v~~~~~g~~~~~~~~~lt~-------------~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
..|+++|.. +|. ....+.. ....+.++++|+++.|..+.-.+ |.+|.+.+
T Consensus 192 ---~~I~vIDp~-tG~----V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W---p~~~ev~~ 254 (262)
T 3nol_A 192 ---NKIVRIDPE-TGK----VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW---PKVFEITL 254 (262)
T ss_dssp ---SEEEEECTT-TCB----EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC---SEEEEEEE
T ss_pred ---CeEEEEECC-CCc----EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC---CceEEEEE
Confidence 368888863 332 1111111 12356679999999988887666 46666554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.015 Score=62.03 Aligned_cols=114 Identities=12% Similarity=0.065 Sum_probs=70.1
Q ss_pred EEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEE
Q 008873 92 RVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLY 170 (550)
Q Consensus 92 ~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~ 170 (550)
.++..+.++.|++. +... ..|+++++++...+.|....... +. .+ ..++ .+.+|+++.+....|+
T Consensus 475 GLAvD~~~~~LY~t-D~~~--~~I~v~~ldG~~~~~l~~~~l~~--P~--gI-------aVDp~~g~LYwtD~g~~~~I~ 540 (791)
T 3m0c_C 475 GLAVDWIHSNIYWT-DSVL--GTVSVADTKGVKRKTLFRENGSK--PR--AI-------VVDPVHGFMYWTDWGTPAKIK 540 (791)
T ss_dssp EEEEETTTTEEEEE-ETTT--TEEEEEETTSSSEEEEEECTTCC--EE--EE-------EEETTTTEEEEEECSSSCEEE
T ss_pred eeeeeecCCcEEEE-ecCC--CeEEEEeCCCCeEEEEEeCCCCC--cc--eE-------EEecCCCCEEEecCCCCCeEE
Confidence 45666667665544 3332 26999999988776665421110 00 00 1233 3578888865457899
Q ss_pred EEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 171 LHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 171 ~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
+++++|...+.|..... ...++ .+++.++.||++-... ..|+++++ +|.
T Consensus 541 ~~~~dG~~~~~lv~~~l~~P~GL-avD~~~~~LYwaD~~~----~~I~~~d~--dG~ 590 (791)
T 3m0c_C 541 KGGLNGVDIYSLVTENIQWPNGI-TLDLLSGRLYWVDSKL----HSISSIDV--NGG 590 (791)
T ss_dssp EEETTSCCEEEEECSSCSCEEEE-EEETTTTEEEEEETTT----TEEEEEET--TSC
T ss_pred EEecCCCceEEEEeCCCCCceEE-EEecCCCeEEEEeCCC----CcEEEEec--CCC
Confidence 99999877665554332 22334 3788888999985433 47889998 665
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.51 E-value=0.009 Score=57.72 Aligned_cols=63 Identities=11% Similarity=-0.128 Sum_probs=38.1
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
.|.++|.++++.. .+.+..++.... ...-..+.+||||++++.. ++.. ...|.++|+++++..
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~--g~~P~~~a~spDGk~lyVa-n~~~-~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLV--GTYPWMTSLTPDGKTLLFY-QFSP-APAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCB--SCCGGGEEECTTSSEEEEE-ECSS-SCEEEEEETTTTEEE
T ss_pred EEEEEECCCCeEEEEEECCCcccccc--CCCCceEEEcCCCCEEEEE-EcCC-CCeEEEEECCCCcEE
Confidence 5789999998864 454431110000 0112236899999987665 4321 235999999999864
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.026 Score=53.28 Aligned_cols=183 Identities=9% Similarity=0.000 Sum_probs=101.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC----CceEEEEEeecCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT----GQRKVILVEELDS 135 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~----g~~~~l~~~~~~~ 135 (550)
.|.++|+++++...+-- .......+.|.+++..|+++... ...|+++++++ ...+.+.... .
T Consensus 11 ~I~~i~~~~~~~~~~~~---------~~~~p~g~~~d~~~~~ly~~D~~---~~~I~~~~~~g~~~~~~~~~~~~~~-~- 76 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISRD-I- 76 (316)
T ss_dssp SEEEEETTSCCCEEEEC---------SCSSEEEEEEETTTTEEEEEETT---TTEEEEEEC--------CEEEECSS-C-
T ss_pred eEEEEECCCcceEehhc---------CCCceEEEEEEeCCCEEEEEECC---CCcEEEEECCCCCCCcccEEEEeCC-C-
Confidence 36788999876654421 12234568999987766555322 23599999887 2323332110 0
Q ss_pred eeeccCccccCCCCCccC-CCcEEEEEccCCccEEEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 136 WVNLHDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
..|. ....+ .++-+|+++. +...|.++++++...+.+.... ....++. ++|+++.||++.... .
T Consensus 77 -------~~p~--glavd~~~~~ly~~d~-~~~~I~~~~~~g~~~~~~~~~~~~~P~~ia-vdp~~g~ly~~d~~~---~ 142 (316)
T 1ijq_A 77 -------QAPD--GLAVDWIHSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIV-VDPVHGFMYWTDWGT---P 142 (316)
T ss_dssp -------SCCC--EEEEETTTTEEEEEET-TTTEEEEEETTSSSEEEEEECTTCCEEEEE-EETTTTEEEEEECSS---S
T ss_pred -------CCcC--EEEEeecCCeEEEEEC-CCCEEEEEeCCCCceEEEEECCCCCcceEE-eCCCCCEEEEEccCC---C
Confidence 0010 00112 1234555554 3467899998886655554322 2223443 788888999886432 1
Q ss_pred eEEEEEEeCCCCCCCCCCCeeeCC--CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 214 SHLYCAKLYPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~lt~--~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
..|++++. +|. ..+.+.. ...-..++++++++.|+++-+. ...|++++.. |+..+.+
T Consensus 143 ~~I~~~~~--dG~----~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~---~~~I~~~d~d-g~~~~~~ 201 (316)
T 1ijq_A 143 AKIKKGGL--NGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK---LHSISSIDVN-GGNRKTI 201 (316)
T ss_dssp CEEEEEET--TSC----CEEEEECSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEETT-SCSCEEE
T ss_pred CeEEEEcC--CCC----CeEEEEECCCCCceEEEEeccCCEEEEEECC---CCeEEEEecC-CCceEEE
Confidence 47999998 664 2233322 1224566889988888766433 2489999985 5434444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.021 Score=56.12 Aligned_cols=106 Identities=11% Similarity=-0.103 Sum_probs=60.1
Q ss_pred EEEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEe---c---CCCceEEEEEECCCCceEEEEEe
Q 008873 59 VRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN---R---SQTKLKVLKFDIKTGQRKVILVE 131 (550)
Q Consensus 59 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~---r---~~~~~~l~~~~~~~g~~~~l~~~ 131 (550)
..|.++|+++++.. .+.++ ... .+.+||||+.++.... | ......|..+|..+++...-...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG---------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGG---------FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEEC---------SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECC---------CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 47889999998765 44442 112 5789999997765532 1 11234699999999986432222
Q ss_pred ecCceeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee
Q 008873 132 ELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL 179 (550)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~ 179 (550)
.+........ .| .....++|+ .+|+++...-..|.++|..+.+.
T Consensus 168 ~g~~r~~~g~--~P--~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 168 PDAPRFLVGT--YQ--WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp TTCCCCCBSC--CG--GGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred CCccccccCC--Cc--ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 1011000000 00 011235555 77777654446788999877653
|
| >1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00089 Score=60.79 Aligned_cols=147 Identities=18% Similarity=0.186 Sum_probs=82.0
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeec-ccc---cccc-hhHhHHHH------hCCcEEEE
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC-DSW---INTV-DMRAQYLR------SKGILVWK 367 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~---~~~~-~~~~~~l~------~~G~~vv~ 367 (550)
..+.+....+..+.+|++..... .+++.|++++++|||+...+. ..+ ++.. ..-...+. .+-..++.
T Consensus 27 Gyv~v~~~~~~~lFywf~es~~~--~p~~~Pl~lWlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~SW~~~anllf 104 (270)
T 1gxs_A 27 GYVTIDDNNGRALYYWFQEADTA--DPAAAPLVLWLNGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILF 104 (270)
T ss_dssp EEEEEETTTTEEEEEEEECCCSS--CGGGSCEEEEEECTTTBCTTTTHHHHTTSSEEECTTSSCEEECTTCGGGTSEEEE
T ss_pred EEEEcCCCCCcEEEEEEEEecCC--CCCCCCEEEEecCCCcccchhhhhHHhccCceecCCCCcceeCccchhccccEEE
Confidence 45666655677899998866221 125679999999999987542 111 1100 00000010 12367999
Q ss_pred EC-CCCCCCCchhhHHHHhhccCC-CchHHHHHHHH-HHHHcCCCCCCceEEEEechhHHHHHHHHh--hCC-----Cee
Q 008873 368 LD-NRGTARRGLKFEASIKHNCGR-IDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLA--RFP-----DVF 437 (550)
Q Consensus 368 ~d-~rG~g~~~~~~~~~~~~~~~~-~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~--~~~-----~~~ 437 (550)
+| ..|.|.|-..-.... ..+. ...+|+..+++ |+.+.+.....++.|.|.| |=++...+.. +.. --+
T Consensus 105 iDqPvGtGfSy~~~~~~~--~~~d~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GES-G~yvP~la~~i~~~n~~~~~inL 181 (270)
T 1gxs_A 105 AESPAGVGFSYSNTSSDL--SMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES-GHFIPQLSQVVYRNRNNSPFINF 181 (270)
T ss_dssp ECCSTTSTTCEESSGGGG--CCCHHHHHHHHHHHHHHHHHHCGGGTTSEEEEEEEC-TTHHHHHHHHHHHTTTTCTTCEE
T ss_pred EeccccccccCCCCCccc--cCCcHHHHHHHHHHHHHHHHhChhhcCCCEEEEeCC-CcchHHHHHHHHhccccccceee
Confidence 99 568776522111000 0000 11455666555 4444455566789999999 6554433322 121 357
Q ss_pred EEEEEcCCcCCcc
Q 008873 438 QCAVSGAPVTSWD 450 (550)
Q Consensus 438 ~~~v~~~~~~~~~ 450 (550)
++++++.|++|..
T Consensus 182 kGi~ign~~~d~~ 194 (270)
T 1gxs_A 182 QGLLVSSGLTNDH 194 (270)
T ss_dssp EEEEEESCCCBHH
T ss_pred eeEEEeCCccChh
Confidence 9999999998853
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.49 E-value=0.043 Score=52.32 Aligned_cols=153 Identities=10% Similarity=0.142 Sum_probs=79.6
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE-eecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV-EELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
...+..++|+||+++++...... .|.+.++.+++...... .....+. . .+++++ +++....+
T Consensus 76 ~~~V~~~~~~~~~~~l~s~s~D~----~v~lwd~~~~~~~~~~~~h~~~v~~-----v-------~~sp~~~~l~s~~~d 139 (343)
T 2xzm_R 76 NHFVSDLALSQENCFAISSSWDK----TLRLWDLRTGTTYKRFVGHQSEVYS-----V-------AFSPDNRQILSAGAE 139 (343)
T ss_dssp SSCEEEEEECSSTTEEEEEETTS----EEEEEETTSSCEEEEEECCCSCEEE-----E-------EECSSTTEEEEEETT
T ss_pred CCceEEEEECCCCCEEEEEcCCC----cEEEEECCCCcEEEEEcCCCCcEEE-----E-------EECCCCCEEEEEcCC
Confidence 45678899999999887665332 37777888887643322 2221110 1 234444 55544444
Q ss_pred CccEEEEEeCCCceeeccc---ccCeEEEEEEeEeecCC---------EEEEEEcCCCCceeEEEEEEeCCCCCCCCCCC
Q 008873 165 GFRHLYLHDINGTCLGPIT---EGDWMVEQIVGVNEASG---------QVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP 232 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT---~~~~~~~~~~~~s~dg~---------~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~ 232 (550)
| .|.+++..+.....+. ...-.+... .|+|+++ .+++++..++ ...+| +. .+. ..
T Consensus 140 ~--~i~~wd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~--~i~iw--d~--~~~----~~ 206 (343)
T 2xzm_R 140 R--EIKLWNILGECKFSSAEKENHSDWVSCV-RYSPIMKSANKVQPFAPYFASVGWDG--RLKVW--NT--NFQ----IR 206 (343)
T ss_dssp S--CEEEEESSSCEEEECCTTTSCSSCEEEE-EECCCCCSCSCCCSSCCEEEEEETTS--EEEEE--ET--TTE----EE
T ss_pred C--EEEEEeccCCceeeeecccCCCceeeee-eeccccccccccCCCCCEEEEEcCCC--EEEEE--cC--CCc----ee
Confidence 4 3555565543332222 111123333 4777762 2344444443 24454 43 221 11
Q ss_pred eeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 233 VKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 233 ~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
..+.. ......+.|+|||++|+....+ ..+.+.++.
T Consensus 207 ~~~~~h~~~v~~~~~s~~g~~l~sgs~d----g~v~iwd~~ 243 (343)
T 2xzm_R 207 YTFKAHESNVNHLSISPNGKYIATGGKD----KKLLIWDIL 243 (343)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETT----CEEEEEESS
T ss_pred EEEcCccccceEEEECCCCCEEEEEcCC----CeEEEEECC
Confidence 22222 2346777999999987654333 478888873
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.49 E-value=0.007 Score=60.08 Aligned_cols=160 Identities=11% Similarity=0.067 Sum_probs=82.0
Q ss_pred CceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCc---e-EEEEEeecCceeeccCccccCCCCCccCCCc--EEE
Q 008873 87 EEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQ---R-KVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIW 159 (550)
Q Consensus 87 ~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~---~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 159 (550)
...+..++|+|++. +++...... .|.+.++.+++ . ..+...... +. .+ .|++++ +++
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~--v~---~i-------~~~p~~~~~l~ 294 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVADDQ----KLMIWDTRNNNTSKPSHTVDAHTAE--VN---CL-------SFNPYSEFILA 294 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTS----EEEEEETTCSCSSSCSEEEECCSSC--EE---EE-------EECSSCTTEEE
T ss_pred CCCEeeeEEeCCCCCEEEEEeCCC----eEEEEECCCCCCCcceeEeecCCCC--eE---EE-------EeCCCCCCEEE
Confidence 44678899999555 555544322 47788887762 2 222211111 10 01 233433 555
Q ss_pred EEccCCccEEEEEeCCCc--eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC--------
Q 008873 160 ASEKTGFRHLYLHDINGT--CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL-------- 229 (550)
Q Consensus 160 ~s~~~g~~~l~~~~~~~~--~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~-------- 229 (550)
....+| .|.++++... ....+......+.... |+|+++.+++++..++. ..|| ++...+....
T Consensus 295 tg~~dg--~v~vwd~~~~~~~~~~~~~h~~~v~~i~-~sp~~~~~l~s~~~d~~--i~iw--d~~~~~~~~~~~~~~~~~ 367 (430)
T 2xyi_A 295 TGSADK--TVALWDLRNLKLKLHSFESHKDEIFQVQ-WSPHNETILASSGTDRR--LHVW--DLSKIGEEQSTEDAEDGP 367 (430)
T ss_dssp EEETTS--EEEEEETTCTTSCSEEEECCSSCEEEEE-ECSSCTTEEEEEETTSC--CEEE--EGGGTTCCCCHHHHHHCC
T ss_pred EEeCCC--eEEEEeCCCCCCCeEEeecCCCCEEEEE-ECCCCCCEEEEEeCCCc--EEEE--eCCCCccccCccccccCC
Confidence 554455 4667776542 2333433343455554 99999887777776542 5566 4421111000
Q ss_pred CCCee-eCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 230 EAPVK-LTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 230 ~~~~~-lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.+... +.. ......+.|+|+++.++++.+.. ..|.+.++.
T Consensus 368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d---g~i~iw~~~ 409 (430)
T 2xyi_A 368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSED---NIMQVWQMA 409 (430)
T ss_dssp TTEEEECCCCSSCEEEEEECSSSTTEEEEEETT---SEEEEEEEC
T ss_pred cceEEEcCCCCCCceEEEECCCCCCEEEEEECC---CCEEEeEcc
Confidence 01111 111 12367789999998555554432 366666653
|
| >4az3_A Lysosomal protective protein 32 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0012 Score=60.99 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=81.5
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc-hhHhHHHH------hCCcEEEEECCC-
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV-DMRAQYLR------SKGILVWKLDNR- 371 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~-~~~~~~l~------~~G~~vv~~d~r- 371 (550)
+...++..+..|++..... +...|+|+++-|||+...+...+ ++.. ..-...+. .+-..++.+|.+
T Consensus 28 v~v~~~~~lFywf~es~~~---p~~~Pl~lWlnGGPGcSS~~g~~~E~GP~~~~~~~~~l~~N~~sW~~~an~lfiD~Pv 104 (300)
T 4az3_A 28 LKGSGSKHLHYWFVESQKD---PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPA 104 (300)
T ss_dssp EECSTTEEEEEEEECCSSC---TTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSSCEEECTTCGGGSSEEEEECCST
T ss_pred eecCCCCeEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHHHHhcCCCceecCCCccccccCccHHhhhcchhhcCCC
Confidence 3445678899998876543 25679999999999976532111 1100 00000000 123678889865
Q ss_pred CCCCCchhhHHHHhhccCCCchHHHHHHHH-HHHHcCCCCCCceEEEEechhHHHHHHHHhh---CC-CeeEEEEEcCCc
Q 008873 372 GTARRGLKFEASIKHNCGRIDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLAR---FP-DVFQCAVSGAPV 446 (550)
Q Consensus 372 G~g~~~~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~---~~-~~~~~~v~~~~~ 446 (550)
|.|.|-.... ....+ ......|+..+++ |+...+......+.|+|.||||..+-.++.. .+ --+++++++.|+
T Consensus 105 GtGfSy~~~~-~~~~~-~~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GESY~G~yvP~~a~~i~~~~~inLkG~~iGNg~ 182 (300)
T 4az3_A 105 GVGFSYSDDK-FYATN-DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 182 (300)
T ss_dssp TSTTCEETTC-CCCCB-HHHHHHHHHHHHHHHHHHCGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred cccccccCCC-ccccc-chhhHHHHHHHHHHHHHhChhhcCCceEEEecCCceeeHHHHHHHHHhCCCcccccceecCCc
Confidence 5554421100 00000 0011344544444 4444455566789999999999988777643 22 247999999999
Q ss_pred CCcc
Q 008873 447 TSWD 450 (550)
Q Consensus 447 ~~~~ 450 (550)
+|..
T Consensus 183 ~d~~ 186 (300)
T 4az3_A 183 SSYE 186 (300)
T ss_dssp SBHH
T ss_pred cCHH
Confidence 8854
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.022 Score=53.12 Aligned_cols=201 Identities=14% Similarity=0.133 Sum_probs=96.9
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEE-EcccCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM-DLQCGGTDQ 83 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~ 83 (550)
.++.|||||++||-...|. .|.+||++++..+.+ ++
T Consensus 13 ~~~~~s~~g~~las~s~D~------------------------------------~v~iw~~~~~~~~~~~~l------- 49 (297)
T 2pm7_B 13 HDAVMDYYGKRMATCSSDK------------------------------------TIKIFEVEGETHKLIDTL------- 49 (297)
T ss_dssp EEEEECTTSSEEEEEETTS------------------------------------CEEEEEBCSSCBCCCEEE-------
T ss_pred EEEEECCCCCEEEEEeCCC------------------------------------EEEEEecCCCCcEEEEEE-------
Confidence 5678999999987654331 256778765321111 11
Q ss_pred CCCCceeEEEEECCC--CeEEEEEEecCCCceEEEEEECCCCceEEEEEeec-CceeeccCccccCCCCCccCCC---cE
Q 008873 84 NYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWVNLHDCFTPLDKGVTKYSG---GF 157 (550)
Q Consensus 84 ~~~~~~~~~~~wspD--g~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~ 157 (550)
..-...+..++|+|+ |++|+...... .|.+-++.+++...+..... ...+.. . .|+++ .+
T Consensus 50 ~gH~~~V~~v~~s~~~~g~~l~s~s~D~----~v~iWd~~~~~~~~~~~~~~h~~~v~~---v-------~~~p~~~g~~ 115 (297)
T 2pm7_B 50 TGHEGPVWRVDWAHPKFGTILASCSYDG----KVMIWKEENGRWSQIAVHAVHSASVNS---V-------QWAPHEYGPM 115 (297)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTT----EEEEEEBSSSCBCCCEEECCCSSCEEE---E-------EECCGGGCSE
T ss_pred ccccCCeEEEEecCCCcCCEEEEEcCCC----EEEEEEcCCCceEEEEEeecCCCceeE---E-------EeCcCCCCcE
Confidence 223456788999974 77777665332 25555666665332222111 111110 1 12332 25
Q ss_pred EEEEccCCccEEEEEeCCCce---eecccccCeEEEEEEeEeecC------------CEEEEEEcCCCCceeEEEEEEeC
Q 008873 158 IWASEKTGFRHLYLHDINGTC---LGPITEGDWMVEQIVGVNEAS------------GQVYFTGTLDGPLESHLYCAKLY 222 (550)
Q Consensus 158 ~~~s~~~g~~~l~~~~~~~~~---~~~lT~~~~~~~~~~~~s~dg------------~~l~f~~~~~~~~~~~l~~v~~~ 222 (550)
++....+| .|.++++..+. ...+......+... .|+|++ ..+++++..++. ..||.+..
T Consensus 116 l~s~s~d~--~v~~wd~~~~~~~~~~~~~~h~~~v~~~-~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~--v~lwd~~~- 189 (297)
T 2pm7_B 116 LLVASSDG--KVSVVEFKENGTTSPIIIDAHAIGVNSA-SWAPATIEEDGEHNGTKESRKFVTGGADNL--VKIWKYNS- 189 (297)
T ss_dssp EEEEETTS--EEEEEEBCSSSCBCCEEEECCSSCEEEE-EECCCC------------CCEEEEEETTSC--EEEEEEET-
T ss_pred EEEEECCC--cEEEEEecCCCceeeeeeecccCccceE-eecCCcccccccCCCCCCcceEEEEcCCCc--EEEEEEcC-
Confidence 55444445 35555554331 12222223334444 388763 124445554442 67775543
Q ss_pred CCCCCCCCCCeeeCC-CCceEEEEECCCC--CEEEEeecCCCCCCEEEEEEcCC
Q 008873 223 PDWNHTLEAPVKLTN-GKGKHVAVLDHNM--RNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 223 ~~g~~~~~~~~~lt~-~~~~~~~~~s~dg--~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
+.........+.. ......+.|+|++ ..++.+.+.- ..+.+.++.+
T Consensus 190 --~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D---~~v~iWd~~~ 238 (297)
T 2pm7_B 190 --DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD---RTCIIWTQDN 238 (297)
T ss_dssp --TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT---SCEEEEEESS
T ss_pred --CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC---CcEEEEEeCC
Confidence 2100000112332 2236778999996 3444444432 2456666544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0071 Score=56.86 Aligned_cols=135 Identities=17% Similarity=0.282 Sum_probs=78.2
Q ss_pred eEEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC--CceEEEEEECCCCceEEEEEeecCc
Q 008873 58 KVRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 58 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~--~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
...|+.+|.++++.+.+. . ......++|||||+.|++...... ....|+.++++++. +.... .
T Consensus 168 ~~~v~~~d~~~g~~~~~~-~---------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~--~ 232 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMA-D---------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRR--H 232 (305)
T ss_dssp CEEEEEECSSSCCCEEEE-E---------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE---EEEEE--E
T ss_pred CCeEEEEcCCCCcEEEEe-c---------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCe--E
Confidence 467999999888877664 2 112345799999997766543310 12368888877654 22110 0
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
+.... ...+ .....++++-+|++..+ .|++++.++.....+..... +... .++++++.||++++. .
T Consensus 233 ~~~~~-~~~p--dgi~~d~~G~lwv~~~~---gv~~~~~~g~~~~~~~~~~~-~~~~-~f~~d~~~L~it~~~------~ 298 (305)
T 3dr2_A 233 FASVP-DGLP--DGFCVDRGGWLWSSSGT---GVCVFDSDGQLLGHIPTPGT-ASNC-TFDQAQQRLFITGGP------C 298 (305)
T ss_dssp EECCS-SSCC--CSEEECTTSCEEECCSS---EEEEECTTSCEEEEEECSSC-CCEE-EECTTSCEEEEEETT------E
T ss_pred EEECC-CCCC--CeEEECCCCCEEEecCC---cEEEECCCCCEEEEEECCCc-eeEE-EEeCCCCEEEEEcCC------e
Confidence 11000 0001 11123445556666533 49999998776666655442 3333 377899999988763 5
Q ss_pred EEEEEe
Q 008873 216 LYCAKL 221 (550)
Q Consensus 216 l~~v~~ 221 (550)
||++++
T Consensus 299 l~~~~~ 304 (305)
T 3dr2_A 299 LWMLPL 304 (305)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.033 Score=51.93 Aligned_cols=178 Identities=8% Similarity=0.009 Sum_probs=82.2
Q ss_pred EEEEEECCCCceEEE-EcccCCCCCCCCCceeEEEEECCC--CeEEEEEEecCCCceEEEEEECCCCce---EEEEEeec
Q 008873 60 RLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKTGQR---KVILVEEL 133 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~wspD--g~~i~~~~~r~~~~~~l~~~~~~~g~~---~~l~~~~~ 133 (550)
.|.+||+++++...+ .+ ......+..++|+|| |+.++...... .|.+.++.+++. ..+.....
T Consensus 78 ~v~iWd~~~~~~~~~~~~-------~~h~~~v~~v~~~p~~~g~~l~s~s~d~----~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVH-------AVHSASVNSVQWAPHEYGPMLLVASSDG----KVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp EEEEEEBSSSCBCCCEEE-------CCCSSCEEEEEECCGGGCSEEEEEETTS----EEEEEEBCSSSCBCCEEEECCSS
T ss_pred EEEEEEcCCCceEEEEEe-------ecCCCceeEEEeCcCCCCcEEEEEECCC----cEEEEEecCCCceeeeeeecccC
Confidence 467789887743221 11 122446788999998 77776654332 355556655431 22211111
Q ss_pred CceeeccCccccCCCC----CccC-CCcEEEEEccCCccEEEEEeCCCc---eeecccccCeEEEEEEeEeecC--CEEE
Q 008873 134 DSWVNLHDCFTPLDKG----VTKY-SGGFIWASEKTGFRHLYLHDINGT---CLGPITEGDWMVEQIVGVNEAS--GQVY 203 (550)
Q Consensus 134 ~~~~~~~~~~~~~~~~----~~~~-~~~~~~~s~~~g~~~l~~~~~~~~---~~~~lT~~~~~~~~~~~~s~dg--~~l~ 203 (550)
. +.. -.|.|.... .... ...++.....+|.-.||-+..... ....|....-.+.... |+|++ ..++
T Consensus 147 ~--v~~-~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~-~sp~~~~~~~l 222 (297)
T 2pm7_B 147 G--VNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-WSPTVLLRSYM 222 (297)
T ss_dssp C--EEE-EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE-ECCCCSSSEEE
T ss_pred c--cce-EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE-ECCCCCCceEE
Confidence 1 100 001111000 0000 112455544556555555442221 1223333333455554 99986 3555
Q ss_pred EEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC---CCCceEEEEECCCCCEEEEeec
Q 008873 204 FTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT---NGKGKHVAVLDHNMRNFVDFHD 258 (550)
Q Consensus 204 f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt---~~~~~~~~~~s~dg~~l~~~~s 258 (550)
.++..++. ..||.++. ... . ...+.+. .......++|+|+|+.|+....
T Consensus 223 as~s~D~~--v~iWd~~~--~~~-~-~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 223 ASVSQDRT--CIIWTQDN--EQG-P-WKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp EEEETTSC--EEEEEESS--TTS-C-CEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred EEEECCCc--EEEEEeCC--CCC-c-cceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 56555543 66774432 111 0 0111221 1223667799999998765543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.003 Score=60.57 Aligned_cols=135 Identities=5% Similarity=0.019 Sum_probs=73.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE-EEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK-VILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~-~l~~~~~~~~~~ 138 (550)
.|.+||+.+++...+... .....+..++|+|||++++...... .|.+.|+.+++.. ..........+.
T Consensus 150 ~i~~wd~~~~~~~~~~~~-------~~~~~i~~~~~~pdg~~lasg~~dg----~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (343)
T 3lrv_A 150 TIGFQSYEDDSQYIVHSA-------KSDVEYSSGVLHKDSLLLALYSPDG----ILDVYNLSSPDQASSRFPVDEEAKIK 218 (343)
T ss_dssp CEEEEESSSSCEEEEECC-------CSSCCCCEEEECTTSCEEEEECTTS----CEEEEESSCTTSCCEECCCCTTSCEE
T ss_pred cEEEEECCCCcEEEEEec-------CCCCceEEEEECCCCCEEEEEcCCC----EEEEEECCCCCCCccEEeccCCCCEE
Confidence 468899999887544321 2223467889999999887764332 3778888888754 211110111111
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCcee-ecccc---cCeEEEE-EEeEeecCCEEEEEEcCCCCc
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCL-GPITE---GDWMVEQ-IVGVNEASGQVYFTGTLDGPL 212 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~-~~lT~---~~~~~~~-~~~~s~dg~~l~f~~~~~~~~ 212 (550)
. + .+++++ +++.+. ++ .|.++|+..++. ..+.. ....+.. ...|+|+|+.|+..+..++
T Consensus 219 ~---l-------~fs~~g~~l~s~~-~~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~-- 283 (343)
T 3lrv_A 219 E---V-------KFADNGYWMVVEC-DQ--TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN-- 283 (343)
T ss_dssp E---E-------EECTTSSEEEEEE-SS--BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT--
T ss_pred E---E-------EEeCCCCEEEEEe-CC--eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC--
Confidence 0 1 234555 444433 34 688888765432 22221 2222221 2459999998876655333
Q ss_pred eeEEEEEE
Q 008873 213 ESHLYCAK 220 (550)
Q Consensus 213 ~~~l~~v~ 220 (550)
...||.++
T Consensus 284 ~i~v~~~~ 291 (343)
T 3lrv_A 284 SLTIYKFD 291 (343)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEc
Confidence 36777554
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0064 Score=65.29 Aligned_cols=188 Identities=9% Similarity=0.034 Sum_probs=88.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCC--CeEEEEEEecCCCceEEEEEECCCCce---EEEEEeecC
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKTGQR---KVILVEELD 134 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspD--g~~i~~~~~r~~~~~~l~~~~~~~g~~---~~l~~~~~~ 134 (550)
.|.+||+.+++...+... ......+..++|+|+ |+.++...... .|.+.++.++.. ..+......
T Consensus 78 ~I~vwd~~~~~~~~~~~~------~~h~~~V~~v~~sp~~~~~~l~sgs~dg----~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 78 KVLIWKEENGRWSQIAVH------AVHSASVNSVQWAPHEYGPLLLVASSDG----KVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp CEEEEEEETTEEEEEEEE------CCCSSCEEEEEECCGGGCSEEEEEETTS----EEEEEECCSSSCCCCEEEECCSSC
T ss_pred eEEEEECCCCcccccccc------cCCCCCeEEEEECCCCCCCEEEEEeCCC----cEEEEEeecCCCcceeEeecCCCc
Confidence 367889888864332221 233456888999999 88877765332 377777777632 222111111
Q ss_pred ceeeccCccccCC----CCCccCCCc-EEEEEccCCccEEEEEeCCCce---eecccccCeEEEEEEeEeec---CCEEE
Q 008873 135 SWVNLHDCFTPLD----KGVTKYSGG-FIWASEKTGFRHLYLHDINGTC---LGPITEGDWMVEQIVGVNEA---SGQVY 203 (550)
Q Consensus 135 ~~~~~~~~~~~~~----~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~---~~~lT~~~~~~~~~~~~s~d---g~~l~ 203 (550)
+.. -.+.+.. ......+++ +++....+|.-.||-+...... ...+..+...+.... |+|+ ++.|
T Consensus 148 --v~~-l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~-~sp~~~~~~~l- 222 (753)
T 3jro_A 148 --VNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA-WSPTVLLRSYL- 222 (753)
T ss_dssp --EEE-EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE-ECCCCSSSEEE-
T ss_pred --eEE-EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE-eccCCCCCCEE-
Confidence 100 0011100 000001122 4555445565444444322211 123333344455554 9999 5544
Q ss_pred EEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC----CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 204 FTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT----NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 204 f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt----~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
+++..++. ..+|.+.. ... . ....+. .......+.|+|+|+.++....+ ..+++.++.+
T Consensus 223 ~s~s~Dg~--I~iwd~~~--~~~-~--~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D----g~I~vwd~~~ 285 (753)
T 3jro_A 223 ASVSQDRT--CIIWTQDN--EQG-P--WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD----NKVTLWKENL 285 (753)
T ss_dssp EEEESSSC--EEEEEESS--SSS-C--CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS----SCEECCBCCS
T ss_pred EEEecCCE--EEEecCCC--CCC-c--ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC----CEEEEEecCC
Confidence 45444442 55664332 111 0 011111 11235567899999877654332 2466666543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.43 E-value=0.027 Score=55.21 Aligned_cols=184 Identities=9% Similarity=0.012 Sum_probs=100.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC----ceEEEEEeecCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG----QRKVILVEELDS 135 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g----~~~~l~~~~~~~ 135 (550)
.|..++++++....+. ........++|.+.+..|+++ +... ..|++++++++ ....+.......
T Consensus 93 ~I~~i~l~~~~~~~~~---------~~~~~~~~l~~d~~~~~lyws-D~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS-DLSQ--RMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp EEEEECTTSCSCEEEE---------CSCSCEEEEEEETTTTEEEEE-ETTT--TEEEEEEC------CCCEEEECSSCSC
T ss_pred eeEEEccCCcceeEec---------cccCcceEEeeeeccCceEEE-ecCC--CeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 4566666666554442 123345678999876666554 3322 25888888763 233333211000
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
+.+ +.. .|. ++-+|++|. +...|.+++++|+..+.+..... ...++. ++|.++.||++-.... .
T Consensus 161 --p~g--lav-----D~~-~~~lY~~d~-~~~~I~~~~~~g~~~~~l~~~~~~~P~~ia-vdp~~g~ly~td~~~~---~ 225 (400)
T 3p5b_L 161 --PDG--LAV-----DWI-HSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIV-VDPVHGFMYWTDWGTP---A 225 (400)
T ss_dssp --EEE--EEE-----ETT-TTEEEEEET-TTTEEEEECTTTCSEEEEEECSSCCEEEEE-EETTTTEEEEEECSSS---C
T ss_pred --ccc--EEE-----Eec-CCceEEEEC-CCCeEEEEeCCCCceEEEEeCCCCCcceEE-EecccCeEEEEeCCCC---C
Confidence 000 000 122 234555554 34589999998876655544322 233443 8888889999864332 4
Q ss_pred EEEEEEeCCCCCCCCCCCeeeCCC--CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.|+++++ +|. ..+.+... ..-..++++++++.|+++-+. ...|+++++. |+..+.+
T Consensus 226 ~I~~~~~--dG~----~~~~~~~~~l~~P~glavd~~~~~lY~aD~~---~~~I~~~d~d-G~~~~~~ 283 (400)
T 3p5b_L 226 KIKKGGL--NGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK---LHSISSIDVN-GGNRKTI 283 (400)
T ss_dssp CEEEEET--TSC----SCEEEECSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEETT-SCCCEEE
T ss_pred EEEEEeC--CCC----ccEEEEECCCCceEEEEEEeCCCEEEEEECC---CCEEEEEeCC-CCccEEE
Confidence 6899998 665 23333222 224556889888887766432 2489999984 5444444
|
| >1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A 1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0014 Score=60.32 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=70.9
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEE-ECCCCCCCCchhhHHHHhhc
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWK-LDNRGTARRGLKFEASIKHN 387 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~-~d~rG~g~~~~~~~~~~~~~ 387 (550)
..+.++++.+.. +.-+||.+||-.. ..+++.+.++.+.. .|.++.+.-..-|.... ..
T Consensus 61 ~~~~~~v~~~~~------~~~iVva~RGT~~--------------~~d~l~d~~~~~~~~~~~~~~~~vh~Gf~~~~-~~ 119 (269)
T 1tib_A 61 GDVTGFLALDNT------NKLIVLSFRGSRS--------------IENWIGNLNFDLKEINDICSGCRGHDGFTSSW-RS 119 (269)
T ss_dssp TTEEEEEEEETT------TTEEEEEECCCSC--------------THHHHTCCCCCEEECTTTSTTCEEEHHHHHHH-HH
T ss_pred cCcEEEEEEECC------CCEEEEEEeCCCC--------------HHHHHHhcCeeeeecCCCCCCCEecHHHHHHH-HH
Confidence 346777776532 3368888998421 25677888888887 56664321111122221 11
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcC
Q 008873 388 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVT 447 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~ 447 (550)
+ .+|+...++.+.++. ...+|.+.||||||.+|..++.... ..+.+....+|..
T Consensus 120 ~----~~~~~~~~~~~~~~~--~~~~i~l~GHSLGGalA~l~a~~l~~~~~~~~~~tfg~P~v 176 (269)
T 1tib_A 120 V----ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRV 176 (269)
T ss_dssp H----HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCCC
T ss_pred H----HHHHHHHHHHHHHHC--CCceEEEecCChHHHHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 1 567777777776653 1258999999999999999887643 2367777777754
|
| >1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG; 2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB: 1wpx_A* 1ysc_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00081 Score=65.81 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=81.5
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---ccc-chhHh------HHHHhCCcEEEEE
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INT-VDMRA------QYLRSKGILVWKL 368 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~-~~~~~------~~l~~~G~~vv~~ 368 (550)
-.+.+.. .+..+..|++..... +.+.|++++++|||+...+...+ ++. ...-. ..+ .+-..++.+
T Consensus 19 GYv~v~~-~~~~lfy~f~~s~~~---~~~~Pl~lwlnGGPG~SS~~g~~~e~GP~~~~~~~~l~~n~~sW-~~~an~lfi 93 (421)
T 1cpy_A 19 GYLDVED-EDKHFFFWTFESRND---PAKDPVILWLNGGPGCSSLTGLFFALGPSSIGPDLKPIGNPYSW-NSNATVIFL 93 (421)
T ss_dssp EEEEETT-TTEEEEEEEECCSSC---TTTSCEEEEECCTTTBCTHHHHTTTTSSEEEETTTEEEECTTCG-GGGSEEECC
T ss_pred EEEEcCC-CCcEEEEEEEEeCCC---CCCCCEEEEECCCCchHhHHHHHHccCCcEECCCCceeECCccc-ccccCEEEe
Confidence 3445432 467888888865432 25679999999999976532111 110 00000 001 123578899
Q ss_pred C-CCCCCCCchhhHHHHhhccCCCchHHHHHHHHH-HHHcCCCCC--CceEEEEechhHHHHHHHHhh---CC---CeeE
Q 008873 369 D-NRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW-LIKQGLAKV--GHIGLYGWSYGGYLSAITLAR---FP---DVFQ 438 (550)
Q Consensus 369 d-~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~-l~~~~~~d~--~~i~i~G~S~GG~~a~~~~~~---~~---~~~~ 438 (550)
| +.|.|.|-..-.. ..+ -....+|+..+++. +.+.+.... .++.|.|.||||..+-.++.. +. --++
T Consensus 94 DqPvGtGfSy~~~~~--~~~-~~~~a~~~~~fl~~~~~~~p~~~~~~~~~yi~GESY~G~y~p~~a~~i~~~n~~~inLk 170 (421)
T 1cpy_A 94 DQPVNVGFSYSGSSG--VSN-TVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRNFNLT 170 (421)
T ss_dssp CCSTTSTTCEESSCC--CCS-SHHHHHHHHHHHHHHHHHCTTSTTTTCCEEEEEETTHHHHHHHHHHHHTTCSSCSSCCC
T ss_pred cCCCcccccCCCCCC--CCC-hHHHHHHHHHHHHHHHHhCHHhcccCCCEEEEeecccccccHHHHHHHHhcccccccee
Confidence 9 5677755221100 000 00124566666654 444455555 789999999999988766642 11 2368
Q ss_pred EEEEcCCcCC
Q 008873 439 CAVSGAPVTS 448 (550)
Q Consensus 439 ~~v~~~~~~~ 448 (550)
+++++.|++|
T Consensus 171 Gi~IGNg~~d 180 (421)
T 1cpy_A 171 SVLIGNGLTD 180 (421)
T ss_dssp EEEEESCCCC
T ss_pred eEEecCcccC
Confidence 8888888876
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0045 Score=59.44 Aligned_cols=56 Identities=4% Similarity=-0.121 Sum_probs=36.9
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ 124 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~ 124 (550)
.|.+||+.+++....-.. +......+..++|+|||+.++...... .|.+.++.+++
T Consensus 139 ~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 194 (366)
T 3k26_A 139 ALRLWNIQTDTLVAIFGG-----VEGHRDEVLSADYDLLGEKIMSCGMDH----SLKLWRINSKR 194 (366)
T ss_dssp CEEEEETTTTEEEEEECS-----TTSCSSCEEEEEECTTSSEEEEEETTS----CEEEEESCSHH
T ss_pred eEEEEEeecCeEEEEecc-----cccccCceeEEEECCCCCEEEEecCCC----CEEEEECCCCc
Confidence 368899998866543210 012345688899999999887765432 37777777764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.012 Score=55.89 Aligned_cols=170 Identities=11% Similarity=-0.020 Sum_probs=86.5
Q ss_pred eEEEEECC-CCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccC---
Q 008873 90 LARVNWMH-GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKT--- 164 (550)
Q Consensus 90 ~~~~~wsp-Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~--- 164 (550)
...+++.+ +|++++.. ... .|+.++.++++.+.+....... +...+.. ...++ ++-+|+++..
T Consensus 82 p~gi~~~~~~g~l~v~d--~~~---~i~~~d~~~g~~~~~~~~~~~~-----~~~~p~~--i~~d~~~G~l~v~d~~~~~ 149 (322)
T 2fp8_A 82 TYDISYNLQNNQLYIVD--CYY---HLSVVGSEGGHATQLATSVDGV-----PFKWLYA--VTVDQRTGIVYFTDVSTLY 149 (322)
T ss_dssp EEEEEEETTTTEEEEEE--TTT---EEEEECTTCEECEEEESEETTE-----ECSCEEE--EEECTTTCCEEEEESCSSC
T ss_pred CceEEEcCCCCcEEEEE--CCC---CEEEEeCCCCEEEEecccCCCC-----cccccce--EEEecCCCEEEEECCcccc
Confidence 35577887 67644332 221 3888998888766654321110 0000100 02345 5655665532
Q ss_pred -------------CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCC
Q 008873 165 -------------GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA 231 (550)
Q Consensus 165 -------------g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~ 231 (550)
....|++++.++++.+.+..+-.....+ .+++||+.||+.-... ..|+++++ ++.. ...
T Consensus 150 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gi-a~~~dg~~lyv~d~~~----~~I~~~~~--~~~~-~~~ 221 (322)
T 2fp8_A 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGA-EVSADSSFVLVAEFLS----HQIVKYWL--EGPK-KGT 221 (322)
T ss_dssp CTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEE-EECTTSSEEEEEEGGG----TEEEEEES--SSTT-TTC
T ss_pred cccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcce-EECCCCCEEEEEeCCC----CeEEEEEC--CCCc-CCc
Confidence 1257999998777655443221111233 4899999999886543 46888887 3321 011
Q ss_pred CeeeCCCCceEEEEECCCCCEEEEeecCC------CCCCEEEEEEcCCCceeEec
Q 008873 232 PVKLTNGKGKHVAVLDHNMRNFVDFHDSL------DSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 232 ~~~lt~~~~~~~~~~s~dg~~l~~~~s~~------~~p~~l~~~~~~~g~~~~~l 280 (550)
.+.+....+-..+.++++|..++...... .....+++++. +|+.+..+
T Consensus 222 ~~~~~~~~gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~ 275 (322)
T 2fp8_A 222 AEVLVKIPNPGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVI 275 (322)
T ss_dssp EEEEEECSSEEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEE
T ss_pred cceEEeCCCCCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEE
Confidence 22222112344557888887444332210 01235666665 45544433
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.025 Score=52.91 Aligned_cols=187 Identities=7% Similarity=0.007 Sum_probs=89.2
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+++++....-. ...... ..++++++.++...... .+...+..++.....+..........
T Consensus 90 ~v~iw~~~~~~~~~~~~--------~h~~~~--~~~~~~~~~l~s~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNMT--------SHSARV--GSLSWNSYILSSGSRSG----HIHHHDVRVAEHHVATLSGHSQEVCG 155 (318)
T ss_dssp EEEEEETTTTEEEEEEE--------CCSSCE--EEEEEETTEEEEEETTS----EEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred cEEEeecCCceeEEEec--------CccceE--EEeecCCCEEEEEecCC----ceEeeecCCCceeEEEEcCccCceEE
Confidence 46788999887643211 111122 34667777666554332 24445555544332221111111100
Q ss_pred cCccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCceee--cc---cccCeEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 140 HDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLG--PI---TEGDWMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~~~~--~l---T~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
. .+.++ .+++....+|. |.++|+.+++.. .+ ......+... .+++++..++..........
T Consensus 156 ---~-------~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 156 ---L-------RWAPDGRHLASGGNDNL--VNVWPSAPGEGGWVPLQTFTQHQGAVKAV-AWCPWQSNVLATGGGTSDRH 222 (318)
T ss_dssp ---E-------EECTTSSEEEEEETTSC--EEEEESSCBTTBSCCSEEECCCCSCEEEE-EECTTSTTEEEEEECTTTCE
T ss_pred ---E-------EEcCCCCEEEEEecCcc--eeEEECCCCcccccceeeecccCCceEEE-EecCCCCcEEEEEecCCCCE
Confidence 0 11222 25555444453 555565544311 11 1112223333 36777766665544332223
Q ss_pred eEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 214 SHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
..+| +.. .+. ...............++++++.++...... ...+++.++.+++.+..+..
T Consensus 223 i~lw--d~~-~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~--d~~i~iwd~~~~~~~~~l~g 282 (318)
T 4ggc_A 223 IRIW--NVC-SGA----CLSAVDAHSQVCSILWSPHYKELISGHGFA--QNQLVIWKYPTMAKVAELKG 282 (318)
T ss_dssp EEEE--ETT-TCC----EEEEEECSSCEEEEEEETTTTEEEEEECTT--TCCEEEEETTTCCEEEEECC
T ss_pred EEEE--ecc-ccc----ccccccceeeeeeeeecccccceEEEEEcC--CCEEEEEECCCCcEEEEEcC
Confidence 3444 541 111 122222333456668899998887654332 24788889988887666643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.027 Score=58.67 Aligned_cols=158 Identities=9% Similarity=0.008 Sum_probs=89.8
Q ss_pred EEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEEE
Q 008873 93 VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYL 171 (550)
Q Consensus 93 ~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~ 171 (550)
++..+.++.|++. +... ..|.+++++++..+.|....-. .|. ....++ ++.+|.+|.+....|++
T Consensus 85 lAvD~~~~~LY~t-D~~~--~~I~v~~~dG~~~~~l~~~~l~-----~P~------~iavdp~~G~lY~tD~g~~~~I~r 150 (628)
T 4a0p_A 85 MAVDWLGKNLYWA-DTGT--NRIEVSKLDGQHRQVLVWKDLD-----SPR------ALALDPAEGFMYWTEWGGKPKIDR 150 (628)
T ss_dssp EEEETTTTEEEEE-ETTT--TEEEEEETTSTTCEEEECSSCC-----CEE------EEEEETTTTEEEEEECSSSCEEEE
T ss_pred EEEEeCCCEEEEE-ECCC--CEEEEEecCCCcEEEEEeCCCC-----Ccc------cEEEccCCCeEEEeCCCCCCEEEE
Confidence 4555555555444 3332 3699999988776666531110 000 001233 46888888755679999
Q ss_pred EeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCC
Q 008873 172 HDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNM 250 (550)
Q Consensus 172 ~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg 250 (550)
.+++|...+.|..+-....++ .++++++.||++-... ..|+++++ +|. ..+.+... ..-..+++ ++
T Consensus 151 ~~~dG~~~~~l~~~~~~P~Gl-alD~~~~~LY~aD~~~----~~I~~~d~--dG~----~~~v~~~~l~~P~glav--~~ 217 (628)
T 4a0p_A 151 AAMDGSERTTLVPNVGRANGL-TIDYAKRRLYWTDLDT----NLIESSNM--LGL----NREVIADDLPHPFGLTQ--YQ 217 (628)
T ss_dssp EETTSCSCEEEECSCSSEEEE-EEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEEECCSCEEEEEE--ET
T ss_pred EeCCCCceEEEECCCCCcceE-EEccccCEEEEEECCC----CEEEEEcC--CCC----ceEEeeccCCCceEEEE--EC
Confidence 999998766655432222334 3888899999986644 37889998 564 22233221 12233333 33
Q ss_pred CEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 251 RNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 251 ~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
..++++-. ....|++++..+|+..+.+
T Consensus 218 ~~ly~tD~---~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 218 DYIYWTDW---SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred CEEEEecC---CCCEEEEEECCCCCceEEE
Confidence 45544432 1247888887677654444
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0051 Score=59.96 Aligned_cols=166 Identities=11% Similarity=0.092 Sum_probs=82.9
Q ss_pred CceeEEEEECCCCe-EEEEEEecCCCceEEEEEECCCCceEEEEEeecC-ceeeccCccccCCCCCccC-CC-cEEEEEc
Q 008873 87 EEYLARVNWMHGNI-LTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGVTKY-SG-GFIWASE 162 (550)
Q Consensus 87 ~~~~~~~~wspDg~-~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~ 162 (550)
...+....|+|++. .++...... .|.+.|+.+|+.......... .. ....... .+. .+ .+++...
T Consensus 157 ~~~v~~~~~~~~~~~~l~s~s~D~----~i~~wd~~~~~~~~~~~~~~~~~h--~~~v~~~-----~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 157 KGYASSCQYVPDQETRLITGSGDQ----TCVLWDVTTGQRISIFGSEFPSGH--TADVLSL-----SINSLNANMFISGS 225 (380)
T ss_dssp SSCCCCCBCCSSSSSCEEEECTTS----CEEEECTTTCCEEEEECCCSSSSC--CSCEEEE-----EECSSSCCEEEEEE
T ss_pred CcceEEEEEecCCCCEEEEECCCC----cEEEEEcCCCcEEEEeecccCCCC--ccCeEEE-----EeecCCCCEEEEEE
Confidence 34566778999865 555543322 267778888876554321100 00 0000000 111 12 2444444
Q ss_pred cCCccEEEEEeCC-C-ceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC--
Q 008873 163 KTGFRHLYLHDIN-G-TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-- 238 (550)
Q Consensus 163 ~~g~~~l~~~~~~-~-~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-- 238 (550)
.+| .|.++|+. + ...+.+......+... .|+|+|+.|+- +..++. ..|| ++. .+. ....+...
T Consensus 226 ~D~--~v~~wd~~~~~~~~~~~~~h~~~v~~v-~~~p~~~~l~s-~s~D~~--i~lw--d~~-~~~----~~~~~~~~~~ 292 (380)
T 3iz6_a 226 CDT--TVRLWDLRITSRAVRTYHGHEGDINSV-KFFPDGQRFGT-GSDDGT--CRLF--DMR-TGH----QLQVYNREPD 292 (380)
T ss_dssp TTS--CEEEEETTTTCCCCEEECCCSSCCCEE-EECTTSSEEEE-ECSSSC--EEEE--ETT-TTE----EEEEECCCCS
T ss_pred CCC--eEEEEECCCCCcceEEECCcCCCeEEE-EEecCCCeEEE-EcCCCe--EEEE--ECC-CCc----EEEEeccccc
Confidence 444 35556654 2 2233343333344444 49999987654 444432 4555 541 121 11111111
Q ss_pred ------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 239 ------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 239 ------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.....+.|+|+|+.++....+ ..+++.|+.+++....+
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~d----g~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYSN----GDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECTT----SCEEEEETTTCCEEEEE
T ss_pred ccccccCceEEEEECCCCCEEEEEECC----CCEEEEECCCCceEEEE
Confidence 124567899999987654333 47888898777754444
|
| >1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein, transmembrane; HET: NAG; 2.40A {Saccharomyces cerevisiae} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00058 Score=68.37 Aligned_cols=139 Identities=13% Similarity=0.009 Sum_probs=76.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---cccc-h------hHhHHHHhCCcEEEEECC-CCCCCC
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INTV-D------MRAQYLRSKGILVWKLDN-RGTARR 376 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~-~------~~~~~l~~~G~~vv~~d~-rG~g~~ 376 (550)
+..+..|.+..... ..+.+.|++++++|||++..+...+ ++.. . .....+ .+-..++.+|. .|.|.|
T Consensus 48 ~~~lfy~~~~~~~~-~~~~~~Pl~lwlnGGPG~SS~~g~~~e~GP~~~~~~~~l~~n~~sw-~~~~n~lfiDqPvGtGfS 125 (483)
T 1ac5_A 48 DLEYFFWKFTNNDS-NGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSW-ISKGDLLFIDQPTGTGFS 125 (483)
T ss_dssp CCEEEEEEEECSCS-GGGSSCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCG-GGTSEEEEECCSTTSTTC
T ss_pred CceEEEEEEEecCC-CCCcCCCEEEEECCCCchHhhhhhHhhcCCeEecCCCceeecccch-hhcCCeEEEecCCCcccc
Confidence 56788888865421 1125679999999999976432110 1100 0 000001 12368999995 788765
Q ss_pred chhhHHHHh---hccCC---CchHHHHHHHH-HHHHcCCCCCCceEEEEechhHHHHHHHHhh-------C-----CCee
Q 008873 377 GLKFEASIK---HNCGR---IDAEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-------F-----PDVF 437 (550)
Q Consensus 377 ~~~~~~~~~---~~~~~---~~~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~-------~-----~~~~ 437 (550)
-..-..... ..+.. ...+|+..+++ |+.+.+..-..++.|+|.||||..+..++.. . .--+
T Consensus 126 y~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~~~~~fP~~~~~~~~i~GeSYgg~y~p~~a~~i~~~n~~~~~~~~~inL 205 (483)
T 1ac5_A 126 VEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDL 205 (483)
T ss_dssp SSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEE
T ss_pred CCcCcccccccccccCCCHHHHHHHHHHHHHHHHHhChhhcCCCEEEEeccccccccHHHHHHHHHhcccccccCcccce
Confidence 221100000 00100 01234444433 3444454556789999999999988766632 0 1347
Q ss_pred EEEEEcCCcCC
Q 008873 438 QCAVSGAPVTS 448 (550)
Q Consensus 438 ~~~v~~~~~~~ 448 (550)
++++++.|++|
T Consensus 206 kGi~IGNg~~d 216 (483)
T 1ac5_A 206 KALLIGNGWID 216 (483)
T ss_dssp EEEEEEEECCC
T ss_pred eeeEecCCccc
Confidence 88888888765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0051 Score=61.07 Aligned_cols=172 Identities=11% Similarity=0.026 Sum_probs=82.9
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEEC-CCCceEEEEEeecCceeeccCccccC--CCC-----CccCCCc-E
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI-KTGQRKVILVEELDSWVNLHDCFTPL--DKG-----VTKYSGG-F 157 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~-~~g~~~~l~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~-~ 157 (550)
...+..++|+||++.++...... .-.||.++. .+|+...........-+. +.+. ... ..+++++ +
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDG--QIIVLKVNHYQQESEVKFLNCECIRKIN----LKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS--EEEEEEEEEEEETTEEEEEEEEEEEEEE----GGGGSSCCCEEEEEEEECSSCEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCC--EEEEEEeccccCCceeeccccceeEEEE----ccCcccccCceEEEEEEcCCCCE
Confidence 34678899999999887665432 234554432 145443322211000000 0000 000 0012333 4
Q ss_pred EEEEccCCccEEEEEeCCCcee-ecccc--cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCee
Q 008873 158 IWASEKTGFRHLYLHDINGTCL-GPITE--GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK 234 (550)
Q Consensus 158 ~~~s~~~g~~~l~~~~~~~~~~-~~lT~--~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~ 234 (550)
++....+| .|.++|+.+++. ..+.. ..-.+.... |+|+++.|+..+.. + ...+| ++. .+. ....
T Consensus 185 l~~~~~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~~~-~s~~~~~l~s~~~d-g--~i~iw--d~~-~~~----~~~~ 251 (437)
T 3gre_A 185 LVALTNLS--RVIIFDIRTLERLQIIENSPRHGAVSSIC-IDEECCVLILGTTR-G--IIDIW--DIR-FNV----LIRS 251 (437)
T ss_dssp EEEEETTS--EEEEEETTTCCEEEEEECCGGGCCEEEEE-ECTTSCEEEEEETT-S--CEEEE--ETT-TTE----EEEE
T ss_pred EEEEeCCC--eEEEEeCCCCeeeEEEccCCCCCceEEEE-ECCCCCEEEEEcCC-C--eEEEE--EcC-Ccc----EEEE
Confidence 44433333 677888766543 34433 233455554 89998777655443 3 14454 652 121 1222
Q ss_pred eC-C-CCceEEEE----ECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 235 LT-N-GKGKHVAV----LDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 235 lt-~-~~~~~~~~----~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
+. . ......+. ++++++.|+....+ ..+.+.++.+++..+.+.
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNSVIVVGGSSK----TFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTEEEEEEESTT----EEEEEEETTTTEEEEEEE
T ss_pred EecCCCCceEEEEeccccCCCccEEEEEcCC----CcEEEEEcCCCcEEEEEE
Confidence 22 1 12244553 44566555433222 378999998887655554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.034 Score=51.80 Aligned_cols=177 Identities=8% Similarity=0.028 Sum_probs=92.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc---e-EEEEEeecCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ---R-KVILVEELDS 135 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~---~-~~l~~~~~~~ 135 (550)
.|.+||+++++...... .....+..++|+|||+.++....... |...++.... . ..+......
T Consensus 40 ~v~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~----i~~~~~~~~~~~~~~~~~~~~~~~- 106 (313)
T 3odt_A 40 TVRLWSKDDQWLGTVVY--------TGQGFLNSVCYDSEKELLLFGGKDTM----INGVPLFATSGEDPLYTLIGHQGN- 106 (313)
T ss_dssp EEEEEEESSSEEEEEEE--------ECSSCEEEEEEETTTTEEEEEETTSC----EEEEETTCCTTSCC-CEECCCSSC-
T ss_pred cEEEEECCCCEEEEEee--------cCCccEEEEEECCCCCEEEEecCCCe----EEEEEeeecCCCCcccchhhcccC-
Confidence 46788998876544322 22456788999999998877654432 4545544432 1 111111111
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEee-cCCEEEEEEcCCCCcee
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE-ASGQVYFTGTLDGPLES 214 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~-dg~~l~f~~~~~~~~~~ 214 (550)
+. .+ .+++ .+++....+| .|.+++ .+.....+......+.... +++ +++.++..+.. + ..
T Consensus 107 -i~---~~-------~~~~-~~l~~~~~d~--~i~~~d-~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~d-~--~i 167 (313)
T 3odt_A 107 -VC---SL-------SFQD-GVVISGSWDK--TAKVWK-EGSLVYNLQAHNASVWDAK-VVSFSENKFLTASAD-K--TI 167 (313)
T ss_dssp -EE---EE-------EEET-TEEEEEETTS--EEEEEE-TTEEEEEEECCSSCEEEEE-EEETTTTEEEEEETT-S--CE
T ss_pred -EE---EE-------EecC-CEEEEEeCCC--CEEEEc-CCcEEEecccCCCceeEEE-EccCCCCEEEEEECC-C--CE
Confidence 00 00 1222 2444444445 355555 3434444444444454444 555 77776655443 3 24
Q ss_pred EEEEEEeCCCCCCCCCCCeeeCC--CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLTN--GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt~--~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
.+| +. .. ....+.. ......+.++|++. ++.... ...+.++++.+++....+..
T Consensus 168 ~i~--d~--~~-----~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~~~~~~~~~~ 223 (313)
T 3odt_A 168 KLW--QN--DK-----VIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHTGDVLRTYEG 223 (313)
T ss_dssp EEE--ET--TE-----EEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTTCCEEEEEEC
T ss_pred EEE--ec--Cc-----eEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCchhhhhhhhc
Confidence 555 43 11 1223332 23366778999987 443322 24799999988876665543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.12 Score=48.96 Aligned_cols=166 Identities=12% Similarity=0.089 Sum_probs=74.3
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECC-CCc-eEEEEEeec-CceeeccCccccCCCCCccCCCc-EEEEEc
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIK-TGQ-RKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGG-FIWASE 162 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~-~g~-~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 162 (550)
...+..++|+|||++|+....... |.+.++. +++ .+.+..... ...+.. . .|++++ +++...
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~----v~iwd~~~~~~~~~~~~~~~~h~~~v~~---v-------~~~p~~~~l~s~s 172 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKS----VWIWETDESGEEYECISVLQEHSQDVKH---V-------IWHPSEALLASSS 172 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSC----EEEEECCTTCCCCEEEEEECCCSSCEEE---E-------EECSSSSEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCE----EEEEeccCCCCCeEEEEEeccCCCceEE---E-------EECCCCCEEEEEc
Confidence 345788999999998877654332 5555553 222 222222211 111110 1 234444 555554
Q ss_pred cCCccEEEEEeCCC-ceeecccccCeEEEEEEeEeecCC-EEEEEEcCCCCceeEEEEEEeCCCCCCCC-CCCeeeC--C
Q 008873 163 KTGFRHLYLHDING-TCLGPITEGDWMVEQIVGVNEASG-QVYFTGTLDGPLESHLYCAKLYPDWNHTL-EAPVKLT--N 237 (550)
Q Consensus 163 ~~g~~~l~~~~~~~-~~~~~lT~~~~~~~~~~~~s~dg~-~l~f~~~~~~~~~~~l~~v~~~~~g~~~~-~~~~~lt--~ 237 (550)
.+|.-.||-..... .....+....-.+... .|++++. ..++++..++. ..||.+.......... .....+. .
T Consensus 173 ~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~l~s~s~D~~--v~iw~~~~~~~~~~~~~~~~~~~~~~h 249 (330)
T 2hes_X 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSS-DFDKTEGVFRLCSGSDDST--VRVWKYMGDDEDDQQEWVCEAILPDVH 249 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEE-EECCSSSSCEEEEEETTSC--EEEEEEEEECTTSCEEEEEEEECCSCC
T ss_pred CCCeEEEEECCCCCeeEEEEccCCCCcEEEE-EecCCCCeeEEEEEeCCCe--EEEEEecCCCccccceeEEeeeccccc
Confidence 55655555443211 1223343333344444 3888832 23344444442 6777665310000000 0011122 1
Q ss_pred CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 238 GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 238 ~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
......+.|++++ .|+ +.+. + ..+.+.+..++
T Consensus 250 ~~~v~~v~~s~~~-~l~-s~~~-d--g~v~iw~~~~~ 281 (330)
T 2hes_X 250 KRQVYNVAWGFNG-LIA-SVGA-D--GVLAVYEEVDG 281 (330)
T ss_dssp SSCEEEEEECTTS-CEE-EEET-T--SCEEEEEEETT
T ss_pred ccceEEEEEcCCC-EEE-EEeC-C--CEEEEEEcCCC
Confidence 2236677888765 333 3332 1 25666665555
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.051 Score=53.91 Aligned_cols=105 Identities=10% Similarity=-0.010 Sum_probs=54.2
Q ss_pred CceeEEEEECCC-CeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 87 EEYLARVNWMHG-NILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspD-g~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
...+..++|+|+ +.+++...... .|.+.|+.+++...... .....+ .-+ .|++++ +++....+
T Consensus 149 ~~~V~~v~~~p~~~~~las~s~Dg----~v~iwD~~~~~~~~~~~-~~~~~v------~~v----~wspdg~~lasgs~d 213 (434)
T 2oit_A 149 GGMVIDMKWNPTVPSMVAVCLADG----SIAVLQVTETVKVCATL-PSTVAV------TSV----CWSPKGKQLAVGKQN 213 (434)
T ss_dssp GGSEEEEEECSSCTTEEEEEETTS----CEEEEEESSSEEEEEEE-CGGGCE------EEE----EECTTSSCEEEEETT
T ss_pred CCceEEEEECCCCCCEEEEEECCC----eEEEEEcCCCcceeecc-CCCCce------eEE----EEcCCCCEEEEEcCC
Confidence 346788999998 56776665433 26677777774322111 111111 001 345554 45444444
Q ss_pred CccEEEEEeCCCceeeccccc-------CeEEEEEEeEeecCCEEEEEEcCC
Q 008873 165 GFRHLYLHDINGTCLGPITEG-------DWMVEQIVGVNEASGQVYFTGTLD 209 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~-------~~~~~~~~~~s~dg~~l~f~~~~~ 209 (550)
| .|.+++.++...+.+... ...+..+. |++++..++...+.+
T Consensus 214 g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~-w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 214 G--TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVL-WIGTYVFAIVYAAAD 262 (434)
T ss_dssp S--CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEE-EEETTEEEEEEEETT
T ss_pred C--cEEEEccCCcccccccCCcccCCCCceeEEEEE-EecCceEEEEEccCC
Confidence 4 466777764333333221 22455554 888876655444443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.045 Score=52.17 Aligned_cols=157 Identities=5% Similarity=-0.003 Sum_probs=84.9
Q ss_pred ceeEEEEECC--CCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 88 EYLARVNWMH--GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 88 ~~~~~~~wsp--Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
..+..++|+| +|+.++...... .|.+.|+.+++...+........ +.-+ .+++++ ++.....+
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg----~i~~wd~~~~~~~~~~~~~~~~~------i~~~----~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRG----TIGFQSYEDDSQYIVHSAKSDVE------YSSG----VLHKDSLLLALYSPD 191 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTC----CEEEEESSSSCEEEEECCCSSCC------CCEE----EECTTSCEEEEECTT
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCC----cEEEEECCCCcEEEEEecCCCCc------eEEE----EECCCCCEEEEEcCC
Confidence 4578899999 999887765433 37788889888754432211100 0000 245555 44444444
Q ss_pred CccEEEEEeCCCcee--ecccc-cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC---C
Q 008873 165 GFRHLYLHDINGTCL--GPITE-GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN---G 238 (550)
Q Consensus 165 g~~~l~~~~~~~~~~--~~lT~-~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~---~ 238 (550)
| .|.++|..+++. ..+.. +...+.... |+|+|+.|+..+ . + ...+| ++. .+. ....+.. .
T Consensus 192 g--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~-fs~~g~~l~s~~-~-~--~v~iw--d~~-~~~----~~~~~~~~~~~ 257 (343)
T 3lrv_A 192 G--ILDVYNLSSPDQASSRFPVDEEAKIKEVK-FADNGYWMVVEC-D-Q--TVVCF--DLR-KDV----GTLAYPTYTIP 257 (343)
T ss_dssp S--CEEEEESSCTTSCCEECCCCTTSCEEEEE-ECTTSSEEEEEE-S-S--BEEEE--ETT-SST----TCBSSCCCBC-
T ss_pred C--EEEEEECCCCCCCccEEeccCCCCEEEEE-EeCCCCEEEEEe-C-C--eEEEE--EcC-CCC----cceeecccccc
Confidence 5 566677665543 24444 344455554 999998877666 2 2 24555 662 221 1111211 1
Q ss_pred Cc-e--EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 239 KG-K--HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 239 ~~-~--~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.. . ..+.|+|+|++|+...... ..+.+++..++.
T Consensus 258 ~~~~~~~~~~~~~~g~~l~~~s~~d---~~i~v~~~~~~~ 294 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNMIAYSNES---NSLTIYKFDKKT 294 (343)
T ss_dssp ----CCEEEEECTTSSEEEEEETTT---TEEEEEEECTTT
T ss_pred cccccceEEEECCCCCEEEEecCCC---CcEEEEEEcccc
Confidence 01 1 3478999999887543311 256666664443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.12 Score=49.24 Aligned_cols=178 Identities=12% Similarity=0.084 Sum_probs=90.2
Q ss_pred eEEEEEEECC--CCceEEEEcccCCCCCCCCCceeEEEEEC--CCCeEEEEEEecC--CCceEEEEEECCCCceEEEEEe
Q 008873 58 KVRLGVVSAA--GGPVSWMDLQCGGTDQNYDEEYLARVNWM--HGNILTAQVLNRS--QTKLKVLKFDIKTGQRKVILVE 131 (550)
Q Consensus 58 ~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ws--pDg~~i~~~~~r~--~~~~~l~~~~~~~g~~~~l~~~ 131 (550)
..+|+++|++ +++.+++.+..++. ......--.+... .||+..+|+.+.. ...-+|+.++.+++..+.+.+.
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~--~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTL--DISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSC--CGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCeEEEEecCCCCCceEEEEccCCCC--CcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 3579999998 45666665531100 0001111222332 4677545555554 2345799999987766655543
Q ss_pred ecCceeeccCccccCCCCCccCCCc-EEEEEcc---------------CCccEEEEEeCCCceeecccccCeEEEEEEeE
Q 008873 132 ELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK---------------TGFRHLYLHDINGTCLGPITEGDWMVEQIVGV 195 (550)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~---------------~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~ 195 (550)
.+... -++.+. ..++++ |++..+. .....||+++.. +.+.+..+-....++ .|
T Consensus 160 ~g~~~------~~pND~--~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGi-a~ 228 (355)
T 3sre_A 160 RHKLL------PSVNDI--VAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGI-NI 228 (355)
T ss_dssp CCTTC------SSEEEE--EEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEE-EE
T ss_pred ccCCC------CCCceE--EEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcc-eE
Confidence 32210 111110 112333 4333221 124689999863 455554432223445 49
Q ss_pred eecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECC-CCCEEE
Q 008873 196 NEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDH-NMRNFV 254 (550)
Q Consensus 196 s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~-dg~~l~ 254 (550)
|||++.||++.+.. ..|++.++..+|... ..+.+.....-..+.+++ +|...+
T Consensus 229 spDg~~lYvadt~~----~~I~~~~~~~~g~l~--~~~~~~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 229 SPDGKYVYIAELLA----HKIHVYEKHANWTLT--PLRVLSFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp CTTSSEEEEEEGGG----TEEEEEEECTTSCEE--EEEEEECSSEEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEeCCC----CeEEEEEECCCCcEe--cCEEEeCCCCCceEEEeCCCCcEEE
Confidence 99999999987653 467777773233211 112221122234556777 476544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.014 Score=58.00 Aligned_cols=129 Identities=8% Similarity=0.033 Sum_probs=66.7
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
|.+||++++....+... ......+..+.|+|||++++...... .|.+.++.+.+...+...... +..
T Consensus 189 v~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~g~~dg----~i~~wd~~~~~~~~~~~h~~~--v~~- 255 (435)
T 4e54_B 189 TRLQDFKGNILRVFASS------DTINIWFCSLDVSASSRMVVTGDNVG----NVILLNMDGKELWNLRMHKKK--VTH- 255 (435)
T ss_dssp EEEEETTSCEEEEEECC------SSCSCCCCCEEEETTTTEEEEECSSS----BEEEEESSSCBCCCSBCCSSC--EEE-
T ss_pred EEEeeccCCceeEEecc------CCCCccEEEEEECCCCCEEEEEeCCC----cEeeeccCcceeEEEecccce--EEe-
Confidence 67789998766554332 12233456789999999887764332 377777776544332221111 110
Q ss_pred CccccCCCCCccCCC--cEEEEEccCCccEEEEEeCCCcee-ecc---cccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 141 DCFTPLDKGVTKYSG--GFIWASEKTGFRHLYLHDINGTCL-GPI---TEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~--~~~~~s~~~g~~~l~~~~~~~~~~-~~l---T~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
+ .++++ .++.....+|. |.++|+...+. ..+ ......+... .|+|+|+.|+..+.+ + ..
T Consensus 256 --v-------~~~p~~~~~~~s~s~d~~--v~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~spdg~~l~s~~~D-~--~i 320 (435)
T 4e54_B 256 --V-------ALNPCCDWFLATASVDQT--VKIWDLRQVRGKASFLYSLPHRHPVNAA-CFSPDGARLLTTDQK-S--EI 320 (435)
T ss_dssp --E-------EECTTCSSEEEEEETTSB--CCEEETTTCCSSSCCSBCCBCSSCEEEC-CBCTTSSEEEEEESS-S--CE
T ss_pred --e-------eecCCCceEEEEecCcce--eeEEecccccccceEEEeeeccccccce-eECCCCCeeEEEcCC-C--EE
Confidence 1 12332 25544444454 44455543321 112 1123345554 499999877655543 3 24
Q ss_pred EEE
Q 008873 215 HLY 217 (550)
Q Consensus 215 ~l~ 217 (550)
.||
T Consensus 321 ~iw 323 (435)
T 4e54_B 321 RVY 323 (435)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.12 Score=47.60 Aligned_cols=187 Identities=12% Similarity=0.075 Sum_probs=90.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEE-CCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW-MHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w-spDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++|.++...+.+... +. ..........+++ .++|++++.... ....|++++.+ |+..............
T Consensus 52 ~i~~~d~~g~~~~~~~~~-~~--~~~~~~~p~~i~~~~~~g~l~v~~~~---~~~~i~~~d~~-g~~~~~~~~~~~~~~~ 124 (286)
T 1q7f_A 52 RIQIFDKEGRFKFQFGEC-GK--RDSQLLYPNRVAVVRNSGDIIVTERS---PTHQIQIYNQY-GQFVRKFGATILQHPR 124 (286)
T ss_dssp EEEEECTTSCEEEEECCB-SS--STTCBSSEEEEEEETTTTEEEEEECG---GGCEEEEECTT-SCEEEEECTTTCSCEE
T ss_pred EEEEECCCCcEEEEeccc-CC--CcccccCceEEEEEcCCCeEEEEcCC---CCCEEEEECCC-CcEEEEecCccCCCce
Confidence 467777775544443221 00 0011123456788 578875544321 12358888854 4432211110000000
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccc-cC-eEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE-GD-WMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~-~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.+ ..++++-+|+++. +...|++++.++...+.+.. +. .....+ .++++|+ ||++.... ..|
T Consensus 125 ---~i-------~~~~~g~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i-~~~~~g~-l~v~~~~~----~~i 187 (286)
T 1q7f_A 125 ---GV-------TVDNKGRIIVVEC-KVMRVIIFDQNGNVLHKFGCSKHLEFPNGV-VVNDKQE-IFISDNRA----HCV 187 (286)
T ss_dssp ---EE-------EECTTSCEEEEET-TTTEEEEECTTSCEEEEEECTTTCSSEEEE-EECSSSE-EEEEEGGG----TEE
T ss_pred ---EE-------EEeCCCCEEEEEC-CCCEEEEEcCCCCEEEEeCCCCccCCcEEE-EECCCCC-EEEEECCC----CEE
Confidence 00 1244444555543 23578899987765554432 11 123344 4888875 77765433 357
Q ss_pred EEEEeCCCCCCCCCCCeeeCCC---CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNG---KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~---~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
++++. ++. ....+... .....+.++++|+.++....+ ...|.+++. +++.++.+
T Consensus 188 ~~~~~--~g~----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~---~~~i~~~~~-~g~~~~~~ 244 (286)
T 1q7f_A 188 KVFNY--EGQ----YLRQIGGEGITNYPIGVGINSNGEILIADNHN---NFNLTIFTQ-DGQLISAL 244 (286)
T ss_dssp EEEET--TCC----EEEEESCTTTSCSEEEEEECTTCCEEEEECSS---SCEEEEECT-TSCEEEEE
T ss_pred EEEcC--CCC----EEEEEccCCccCCCcEEEECCCCCEEEEeCCC---CEEEEEECC-CCCEEEEE
Confidence 77776 443 23333322 234566889998644332211 127888875 56544444
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.039 Score=50.32 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=75.3
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccE
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRH 168 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 168 (550)
....++++|||++++. +.. ...|++++..+........ .... .+ .....++++-+|+++. +...
T Consensus 109 ~p~~i~~~~~g~l~v~--~~~--~~~i~~~~~~~~~~~~~~~-~~~~--------~p--~~i~~~~~g~l~v~~~-~~~~ 172 (270)
T 1rwi_B 109 YPEGLAVDTQGAVYVA--DRG--NNRVVKLAAGSKTQTVLPF-TGLN--------DP--DGVAVDNSGNVYVTDT-DNNR 172 (270)
T ss_dssp SEEEEEECTTCCEEEE--EGG--GTEEEEECTTCCSCEECCC-CSCC--------SC--CCEEECTTCCEEEEEG-GGTE
T ss_pred CCcceEECCCCCEEEE--ECC--CCEEEEEECCCceeEeecc-ccCC--------Cc--eeEEEeCCCCEEEEEC-CCCE
Confidence 4567889999984432 222 2247888665544322110 0000 00 0112344444555554 2347
Q ss_pred EEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC--CceEEEE
Q 008873 169 LYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG--KGKHVAV 245 (550)
Q Consensus 169 l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~--~~~~~~~ 245 (550)
|++++.++.......... .....+ .++++| .||+.....+ .|++++. ++. ....+... .....+.
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i-~~d~~g-~l~v~~~~~~----~v~~~~~--~~~----~~~~~~~~~~~~p~~i~ 240 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGI-AVDEAG-TVYVTEHNTN----QVVKLLA--GST----TSTVLPFTGLNTPLAVA 240 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEE-EECTTC-CEEEEETTTS----CEEEECT--TCS----CCEECCCCSCSCEEEEE
T ss_pred EEEEecCCCceEeecccCCCCceEE-EECCCC-CEEEEECCCC----cEEEEcC--CCC----cceeeccCCCCCceeEE
Confidence 899998776544333222 123334 377887 6777765433 4677776 443 22222221 2356667
Q ss_pred ECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 246 LDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 246 ~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
++++|+ ++++.+.. ..|.++++
T Consensus 241 ~~~~g~-l~v~~~~~---~~v~~~~~ 262 (270)
T 1rwi_B 241 VDSDRT-VYVADRGN---DRVVKLTS 262 (270)
T ss_dssp ECTTCC-EEEEEGGG---TEEEEECC
T ss_pred ECCCCC-EEEEECCC---CEEEEEcC
Confidence 888886 43332221 25666554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.051 Score=48.52 Aligned_cols=170 Identities=12% Similarity=0.067 Sum_probs=93.2
Q ss_pred EEEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 59 VRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
+.|.++|+++++.. .+.+. . .+ ......++|..|+.+..+. ..++++|.++.+...-......+|-
T Consensus 43 S~v~~vD~~tgkv~~~~~l~-------~--~~-fgeGi~~~~~~ly~ltw~~---~~v~v~D~~tl~~~~ti~~~~~Gwg 109 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVP-------P--PY-FGAGIVAWRDRLIQLTWRN---HEGFVYDLATLTPRARFRYPGEGWA 109 (243)
T ss_dssp CEEEEEETTTCCEEEEEECC-------T--TC-CEEEEEEETTEEEEEESSS---SEEEEEETTTTEEEEEEECSSCCCE
T ss_pred ceEEEEECCCCCEEEEEeCC-------C--Cc-ceeEEEEeCCEEEEEEeeC---CEEEEEECCcCcEEEEEeCCCCceE
Confidence 57899999999875 34442 1 11 1112344566666555443 3599999999876433332333442
Q ss_pred eccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCce-eecccc--cCeEE---EEEEeEeecCCEEEEEEcCCCC
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITE--GDWMV---EQIVGVNEASGQVYFTGTLDGP 211 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~-~~~lT~--~~~~~---~~~~~~s~dg~~l~f~~~~~~~ 211 (550)
- .++ ++.+|+|+ |-..|+.+|+++.+ .+.++- ....+ .... |. +| .||...-..
T Consensus 110 l------------t~d-g~~L~vSd--gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe-~~-~G-~lyanvw~s-- 169 (243)
T 3mbr_X 110 L------------TSD-DSHLYMSD--GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE-WV-NG-ELLANVWLT-- 169 (243)
T ss_dssp E------------EEC-SSCEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE-EE-TT-EEEEEETTT--
T ss_pred E------------eeC-CCEEEEEC--CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE-Ee-CC-EEEEEECCC--
Confidence 1 112 23677887 45679999987754 233332 22221 1211 32 44 577444322
Q ss_pred ceeEEEEEEeCCCCCCCCCCCeee--------------CCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 212 LESHLYCAKLYPDWNHTLEAPVKL--------------TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 212 ~~~~l~~v~~~~~g~~~~~~~~~l--------------t~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
..|.++|.. +|. ....+ ........++++|+++.|..+.-.+ |.+|.+.+
T Consensus 170 --~~I~vIDp~-tG~----V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w---p~~~~v~~ 233 (243)
T 3mbr_X 170 --SRIARIDPA-SGK----VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW---PMLYEIRL 233 (243)
T ss_dssp --TEEEEECTT-TCB----EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC---SEEEEEEE
T ss_pred --CeEEEEECC-CCC----EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC---CcEEEEEE
Confidence 367777762 232 11111 1112356678999999887776665 57777665
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.17 Score=46.81 Aligned_cols=105 Identities=11% Similarity=0.059 Sum_probs=55.3
Q ss_pred EEEEEccCCccEEEEEeCCCceeecccc-cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee
Q 008873 157 FIWASEKTGFRHLYLHDINGTCLGPITE-GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL 235 (550)
Q Consensus 157 ~~~~s~~~g~~~l~~~~~~~~~~~~lT~-~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l 235 (550)
+++....+|. |.+++. +...+.+.. ....+... .|+++++ + +++..++ .|...++. .+. ....+
T Consensus 157 ~l~~~~~d~~--i~i~d~-~~~~~~~~~~~~~~i~~~-~~~~~~~-~-~~~~~dg----~i~i~d~~-~~~----~~~~~ 221 (313)
T 3odt_A 157 KFLTASADKT--IKLWQN-DKVIKTFSGIHNDVVRHL-AVVDDGH-F-ISCSNDG----LIKLVDMH-TGD----VLRTY 221 (313)
T ss_dssp EEEEEETTSC--EEEEET-TEEEEEECSSCSSCEEEE-EEEETTE-E-EEEETTS----EEEEEETT-TCC----EEEEE
T ss_pred EEEEEECCCC--EEEEec-CceEEEEeccCcccEEEE-EEcCCCe-E-EEccCCC----eEEEEECC-chh----hhhhh
Confidence 4444444453 555553 333333433 33334444 4899986 4 4444443 45555662 222 23333
Q ss_pred CC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 236 TN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 236 t~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.. ......+.|+|++. ++.... ...+.+.++.+++....+.
T Consensus 222 ~~~~~~i~~~~~~~~~~-l~~~~~----dg~v~iwd~~~~~~~~~~~ 263 (313)
T 3odt_A 222 EGHESFVYCIKLLPNGD-IVSCGE----DRTVRIWSKENGSLKQVIT 263 (313)
T ss_dssp ECCSSCEEEEEECTTSC-EEEEET----TSEEEEECTTTCCEEEEEE
T ss_pred hcCCceEEEEEEecCCC-EEEEec----CCEEEEEECCCCceeEEEe
Confidence 32 23467778999994 433322 2478888988887555443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.069 Score=50.95 Aligned_cols=94 Identities=9% Similarity=0.003 Sum_probs=55.8
Q ss_pred EEEEEECCC-CceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAG-GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.+||+++ ++.....+ ......+..++|+|||+.++...... .|.+.++.+++...+.........
T Consensus 65 ~i~iw~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~- 132 (368)
T 3mmy_A 65 DVRCWEVQDSGQTIPKAQ-------QMHTGPVLDVCWSDDGSKVFTASCDK----TAKMWDLSSNQAIQIAQHDAPVKT- 132 (368)
T ss_dssp EEEEEEECTTSCEEEEEE-------EECSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECSSCEEE-
T ss_pred cEEEEEcCCCCceeEEEe-------ccccCCEEEEEECcCCCEEEEEcCCC----cEEEEEcCCCCceeeccccCceEE-
Confidence 367888887 44432222 12245678899999999887665332 477889999887765543332110
Q ss_pred ccCccccCCCCCcc--CCCc-EEEEEccCCccEEEEEeCCCce
Q 008873 139 LHDCFTPLDKGVTK--YSGG-FIWASEKTGFRHLYLHDINGTC 178 (550)
Q Consensus 139 ~~~~~~~~~~~~~~--~~~~-~~~~s~~~g~~~l~~~~~~~~~ 178 (550)
. .| ++++ +++....+| .|.++++.+++
T Consensus 133 ----~-------~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~ 162 (368)
T 3mmy_A 133 ----I-------HWIKAPNYSCVMTGSWDK--TLKFWDTRSSN 162 (368)
T ss_dssp ----E-------EEEECSSCEEEEEEETTS--EEEEECSSCSS
T ss_pred ----E-------EEEeCCCCCEEEEccCCC--cEEEEECCCCc
Confidence 1 12 3444 455544444 57778876554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.023 Score=55.57 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=37.7
Q ss_pred EEEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEe------cC---------CCceEEEEEECCC
Q 008873 59 VRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN------RS---------QTKLKVLKFDIKT 122 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~------r~---------~~~~~l~~~~~~~ 122 (550)
..|.++|.+|.++.. +..+. .....-..+.|+||++.++...- +. +....|..++.++
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDR------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBC------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CeEEEEECCCCeEEEEEccCC------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 468999999988753 32221 11222235689999996655420 00 1234699999998
Q ss_pred CceE
Q 008873 123 GQRK 126 (550)
Q Consensus 123 g~~~ 126 (550)
++..
T Consensus 238 ~k~~ 241 (462)
T 2ece_A 238 RKRI 241 (462)
T ss_dssp TEEE
T ss_pred CcEe
Confidence 7543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.03 Score=58.29 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=88.9
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccE
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRH 168 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~ 168 (550)
-..++..+.++.|++.. .. ...|.++++++...+.|....-. .|. ....++ ++.+|++|.+....
T Consensus 86 P~GlAvD~~~~~ly~~d-~~--~~~I~v~~~dG~~~~~l~~~~l~-----~P~------~Iavdp~~g~ly~tD~g~~~~ 151 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTD-SE--TNRIEVSNLDGSLRKVLFWQELD-----QPR------AIALDPSSGFMYWTDWGEVPK 151 (619)
T ss_dssp EEEEEEETTTTEEEEEE-TT--TTEEEEEETTSCSCEEEECSSCS-----CCC------CEEEETTTTEEEEEECSSSCE
T ss_pred cCeEEEEecCCEEEEEe-CC--CCEEEEEECCCCCEEEEEeCCCC-----CCc------eEEEecCCCeEEEeccCCCCE
Confidence 34567777666665543 32 23689999998776666531100 010 011233 45788888654578
Q ss_pred EEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCce--EEEE
Q 008873 169 LYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGK--HVAV 245 (550)
Q Consensus 169 l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~--~~~~ 245 (550)
|++.+++|...+.|..... ...++ .++++++.||+.-... ..|+++++ +|.. .+.+...... ..++
T Consensus 152 I~r~~~dG~~~~~l~~~~~~~P~Gl-ald~~~~~LY~aD~~~----~~I~~~~~--dG~~----~~~~~~~~~~~P~gi~ 220 (619)
T 3s94_A 152 IERAGMDGSSRFIIINSEIYWPNGL-TLDYEEQKLYWADAKL----NFIHKSNL--DGTN----RQAVVKGSLPHPFALT 220 (619)
T ss_dssp EEEEETTSCSCEEEECSSCSSEEEE-EEETTTTEEEEEETTT----CCEEEESS--SCCE----EC---------CCCEE
T ss_pred EEEEECCCCceEEEEeCCCCCCcEE-EEEccCCEEEEEeCCC----CeEEEecC--CCCc----cEEEEeCCCCCceEEE
Confidence 9999999876665543221 12334 3788889999985543 46888888 5642 1222211111 1223
Q ss_pred ECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 246 LDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 246 ~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
+. +..++++- .. -..+.+++..+|+..+.+.
T Consensus 221 ~~--~~~ly~td--~~-~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 221 LF--EDILYWTD--WS-THSILACNKYTGEGLREIH 251 (619)
T ss_dssp ES--SSEEEEEC--TT-TCSEEEEESSSCCCCEECC
T ss_pred Ee--CCEEEEec--CC-CCEEEEEECCCCcccEEEe
Confidence 33 33554442 22 2368888877776554443
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=62.46 Aligned_cols=93 Identities=15% Similarity=0.015 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.|.|+++||.+++.. .|..+...| ++.|+.+|+++.. ....++++.+.+......-
T Consensus 46 ~~~l~~~hg~~g~~~-------~~~~~~~~l---~~~v~~~~~~~~~--------------~~~~~~~~a~~~~~~i~~~ 101 (316)
T 2px6_A 46 ERPLFLVHPIEGSTT-------VFHSLASRL---SIPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQV 101 (316)
T ss_dssp SCCEEEECCTTCCSG-------GGHHHHHHC---SSCEEEECCCTTS--------------CTTCHHHHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHH-------HHHHHHHhc---CCCEEEEECCCCC--------------CcCCHHHHHHHHHHHHHHh
Confidence 466788999765532 233233434 4999999998311 0112333333332222221
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhC---CCe---eEEEEEcCC
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARF---PDV---FQCAVSGAP 445 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~---~~~~v~~~~ 445 (550)
....++.++||||||.++..++.+. +.. ++.++..++
T Consensus 102 -~~~~~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~ 144 (316)
T 2px6_A 102 -QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDG 144 (316)
T ss_dssp -CSSCCCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESC
T ss_pred -CCCCCEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcC
Confidence 1235799999999999999888754 234 666666544
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.02 E-value=0.23 Score=46.70 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=90.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+++...+....... ..........++++++.++...... .+.+.+..+.....+........+..
T Consensus 109 ~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~s~s~d~----~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFV--------GHTKDVLSVAFSSDNRQIVSGSRDK----TIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp EEEEEETTTTEEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTS----CEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred cceEEeecccceeeeec--------CCCCceeEEEEeecCccceeecCCC----eEEEEEeCCCceEEEEeccccCcccc
Confidence 35677777765543322 2233455678999999776654332 24555665543322211111111100
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
..+.+ ++.. +++....++ .|.+++..+++.. .+......+.... |+|+|+.|+..+. ++ ...||
T Consensus 177 -~~~~~-------~~~~~~~~s~~~d~--~i~i~d~~~~~~~~~~~~h~~~v~~~~-~s~~~~~l~s~s~-Dg--~i~iw 242 (340)
T 4aow_A 177 -VRFSP-------NSSNPIIVSCGWDK--LVKVWNLANCKLKTNHIGHTGYLNTVT-VSPDGSLCASGGK-DG--QAMLW 242 (340)
T ss_dssp -EEECS-------CSSSCEEEEEETTS--CEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEET-TC--EEEEE
T ss_pred -eEEcc-------CCCCcEEEEEcCCC--EEEEEECCCCceeeEecCCCCcEEEEE-ECCCCCEEEEEeC-CC--eEEEE
Confidence 00111 1222 333333333 4666777665433 3333333455554 8999987665443 33 23444
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
++. .+. ....+........+.++|++..++.. .+ ..+.+.++.++.....+
T Consensus 243 --d~~-~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~-~d----~~i~iwd~~~~~~~~~~ 293 (340)
T 4aow_A 243 --DLN-EGK----HLYTLDGGDIINALCFSPNRYWLCAA-TG----PSIKIWDLEGKIIVDEL 293 (340)
T ss_dssp --ETT-TTE----EEEEEECSSCEEEEEECSSSSEEEEE-ET----TEEEEEETTTTEEEEEE
T ss_pred --Eec-cCc----eeeeecCCceEEeeecCCCCceeecc-CC----CEEEEEECCCCeEEEec
Confidence 652 111 23333333446667899988655433 22 47888898766544443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0013 Score=69.73 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=83.2
Q ss_pred EEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEEE
Q 008873 93 VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYL 171 (550)
Q Consensus 93 ~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~ 171 (550)
+++.+.+..|++. +... ..|++++++++..+.|...... .| .....++ ++.+|+++......|++
T Consensus 458 lavD~~~g~LY~t-D~~~--~~I~v~d~dg~~~~~l~~~~~~---------~P--~giavDp~~g~ly~td~~~~~~I~~ 523 (699)
T 1n7d_A 458 LAVDWIHSNIYWT-DSVL--GTVSVADTKGVKRKTLFREQGS---------KP--RAIVVDPVHGFMYWTDWGTPAKIKK 523 (699)
T ss_dssp EECCCSSSBCEEC-CTTT--SCEEEEBSSSCCEEEECCCSSC---------CC--CCEECCSSSSCCEECCCSSSCCEEB
T ss_pred EEEEeeCCcEEEE-eccC--CeEEEEecCCCceEEEEeCCCC---------Cc--ceEEEccCCCcEEEcccCCCCeEEE
Confidence 4565554444333 3322 2488899887766555331100 01 0112233 35677777543468999
Q ss_pred EeCCCceeecccccCeE-EEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-Cc---eEEEEE
Q 008873 172 HDINGTCLGPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KG---KHVAVL 246 (550)
Q Consensus 172 ~~~~~~~~~~lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-~~---~~~~~~ 246 (550)
++++|...+.|...... ..++ .+++++++||++-... ..|+++++ +|. ..+.+... .. -..+++
T Consensus 524 ~~~dG~~~~~l~~~~l~~PnGl-avd~~~~~LY~aD~~~----~~I~~~d~--dG~----~~~~~~~~~~~~~~P~glav 592 (699)
T 1n7d_A 524 GGLNGVDIYSLVTENIQWPNGI-TLDLLSGRLYWVDSKL----HSISSIDV--NGG----NRKTILEDEKRLAHPFSLAV 592 (699)
T ss_dssp CCSSSCCCCEESCSSCSSCCCE-EECTTTCCEEEEETTT----TEEEEECS--SSS----CCEEECCCSSSCSSCCCCEE
T ss_pred EeCCCCCeeEEEeCCCCCccEE-EEeccCCEEEEEecCC----CeEEEEcc--CCC----ceEEEEecCCcCCCceEeEE
Confidence 99887655444322211 1223 4898999999986543 46888888 554 22333221 11 112222
Q ss_pred CCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 247 DHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 247 s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
+++.|+++-.. ...|.+++..+|+.++.+
T Consensus 593 --d~~~lywtd~~---~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 593 --FEDKVFWTDII---NEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp --ETTEEEEECST---TTCEEEEETTTEEEEECC
T ss_pred --ECCEEEEEeCC---CCeEEEEEccCCCceEEe
Confidence 34455544322 247888887677655444
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.037 Score=54.81 Aligned_cols=133 Identities=8% Similarity=0.062 Sum_probs=77.1
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC-CceEEEEEECCCCce--EEEEEeecCce
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ-TKLKVLKFDIKTGQR--KVILVEELDSW 136 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~-~~~~l~~~~~~~g~~--~~l~~~~~~~~ 136 (550)
.|.++|+++++...+.. ....-..++|++||+.|+....... ....++.++.+++-. +.+.....+..
T Consensus 160 ~I~~id~~~~~v~~~~~---------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~g 230 (430)
T 3tc9_A 160 PTRLIDFEKEYVSTVYS---------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNG 230 (430)
T ss_dssp EEEEEETTTTEEEEEEC---------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCC
T ss_pred cEEEEECCCCEEEEEec---------CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceE
Confidence 46788999887765532 1234456899999996655543221 123466666655432 23322111110
Q ss_pred eeccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCceeeccc-cc--CeEEEEEEeEeecCCEEEEEEcCCCCc
Q 008873 137 VNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPIT-EG--DWMVEQIVGVNEASGQVYFTGTLDGPL 212 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~~~lT-~~--~~~~~~~~~~s~dg~~l~f~~~~~~~~ 212 (550)
...++ ++.+|+++. +...|++++++++..+.+. .+ .+. ..+ .++++|++||++....
T Consensus 231 -------------iavdp~~g~lyv~d~-~~~~V~~~~~~~~~~~~~~~~~~~~~P-~gi-a~~pdG~~lyv~d~~~--- 291 (430)
T 3tc9_A 231 -------------AETHPINGELYFNSW-NAGQVFRYDFTTQETTPLFTIQDSGWE-FHI-QFHPSGNYAYIVVVNQ--- 291 (430)
T ss_dssp -------------EEECTTTCCEEEEET-TTTEEEEEETTTTEEEEEEECSSSSCC-EEE-EECTTSSEEEEEETTT---
T ss_pred -------------EEEeCCCCEEEEEEC-CCCEEEEEECCCCcEEEEEEcCCCCcc-eeE-EEcCCCCEEEEEECCC---
Confidence 12345 567777765 3458999999887653332 21 221 223 4899999999886544
Q ss_pred eeEEEEEEe
Q 008873 213 ESHLYCAKL 221 (550)
Q Consensus 213 ~~~l~~v~~ 221 (550)
..|++++.
T Consensus 292 -~~I~~~~~ 299 (430)
T 3tc9_A 292 -HYILRSDY 299 (430)
T ss_dssp -TEEEEEEE
T ss_pred -CEEEEEeC
Confidence 36777776
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.045 Score=51.52 Aligned_cols=96 Identities=8% Similarity=-0.023 Sum_probs=45.2
Q ss_pred EEEEEccCCccEEEEEeCCC--ceeecccccCeEEEEEEeEeecC---CEEEEEEcCCCCceeEEEEEEeCCCCCCCCCC
Q 008873 157 FIWASEKTGFRHLYLHDING--TCLGPITEGDWMVEQIVGVNEAS---GQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA 231 (550)
Q Consensus 157 ~~~~s~~~g~~~l~~~~~~~--~~~~~lT~~~~~~~~~~~~s~dg---~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~ 231 (550)
++.....+|.-.||-+...+ .....+..+.-.+.... |+|++ ..+++++..++ ...|| ++....... ..
T Consensus 181 ~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~-~sp~~~~~~~~las~s~D~--~v~iw--~~~~~~~~~-~~ 254 (316)
T 3bg1_A 181 RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA-WAPSIGLPTSTIASCSQDG--RVFIW--TCDDASSNT-WS 254 (316)
T ss_dssp BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE-CCCCSSCSCCEEEEEETTC--EEEEE--ECSSTTCCC-CB
T ss_pred eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE-ecCCCCCCCceEEEEcCCC--eEEEE--EccCccccc-hh
Confidence 34333344544555543211 12334443333455554 89986 23445555554 25566 442111000 01
Q ss_pred CeeeC-CCCceEEEEECCCCCEEEEeec
Q 008873 232 PVKLT-NGKGKHVAVLDHNMRNFVDFHD 258 (550)
Q Consensus 232 ~~~lt-~~~~~~~~~~s~dg~~l~~~~s 258 (550)
.+.+. .......+.|+|+|+.|+....
T Consensus 255 ~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 255 PKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp CCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred hhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 12222 1234677899999988765543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.94 E-value=0.16 Score=47.76 Aligned_cols=183 Identities=13% Similarity=0.099 Sum_probs=102.8
Q ss_pred EEEEEEECCCCc-eEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-EEEEEee--cC
Q 008873 59 VRLGVVSAAGGP-VSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-KVILVEE--LD 134 (550)
Q Consensus 59 ~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~~l~~~~--~~ 134 (550)
..|..+|++++. ...+.+ ..-.....+.|.+.+..|+++ +-.. ..|++++++++.. +.+.... .+
T Consensus 13 ~~I~~i~l~~~~~~~~~~~--------~~~~~~~~ld~d~~~~~lyw~-D~~~--~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVV--------GGLEDAAAVDFVFSHGLIYWS-DVSE--EAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEEEETTCTTSCCEEEE--------EEEEEEEEEEEEGGGTEEEEE-ETTT--TEEEEEETTSSSCCCEEEEECCSCC
T ss_pred CeEEEEECCCCceEEEEEe--------cCCCccEEEEEEeCCCEEEEE-ECCC--CcEEEEEccCCCceEEEEcCCCCCc
Confidence 357888888764 111111 111234567899876655444 3322 3599999988743 2222211 11
Q ss_pred ceeeccCccccCCCCCccC-CCcEEEEEccCCccEEEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCc
Q 008873 135 SWVNLHDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPL 212 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~ 212 (550)
.- + ..+ .++.+|.++. +...|.+++++|...+.+..... ...++ .++|.++.||++-...
T Consensus 82 ~g------l-------avd~~~g~ly~~d~-~~~~I~~~~~dG~~~~~l~~~~~~~P~gi-avdp~~g~ly~td~~~--- 143 (318)
T 3sov_A 82 DG------L-------ACDWLGEKLYWTDS-ETNRIEVSNLDGSLRKVLFWQELDQPRAI-ALDPSSGFMYWTDWGE--- 143 (318)
T ss_dssp CE------E-------EEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECSSCSSEEEE-EEEGGGTEEEEEECSS---
T ss_pred cE------E-------EEEcCCCeEEEEEC-CCCEEEEEECCCCcEEEEEeCCCCCccEE-EEeCCCCEEEEEecCC---
Confidence 00 0 112 1345556654 34679999998876555543221 22334 3788888999986432
Q ss_pred eeEEEEEEeCCCCCCCCCCCeee-CCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 213 ESHLYCAKLYPDWNHTLEAPVKL-TNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 213 ~~~l~~v~~~~~g~~~~~~~~~l-t~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...|++++. +|. ..+.+ ... ..-..++++++++.|+++-+. ...|++++.. |+..+.+
T Consensus 144 ~~~I~r~~~--dG~----~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~---~~~I~~~d~d-G~~~~~~ 203 (318)
T 3sov_A 144 VPKIERAGM--DGS----SRFIIINSEIYWPNGLTLDYEEQKLYWADAK---LNFIHKSNLD-GTNRQAV 203 (318)
T ss_dssp SCEEEEEET--TSC----SCEEEECSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEETT-SCSCEEE
T ss_pred CCEEEEEEc--CCC----CeEEEEECCCCCccEEEEeccCCEEEEEECC---CCEEEEEcCC-CCceEEE
Confidence 257999998 665 22333 221 124566899988888766432 3489999984 5433444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.071 Score=52.38 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=70.7
Q ss_pred EEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|++++.+++.. ..+... . .........++++|++..|++. .. ...|++++.++++...+....... .
T Consensus 195 ~I~~~d~~~~~~~~~~g~~-~----~~~~~~p~~iav~p~~g~lyv~-d~---~~~I~~~d~~~~~~~~~~~~~~~g--~ 263 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQL-G----STFSGKIGAVALDETEEWLYFV-DS---NKNFGRFNVKTQEVTLIKQLELSG--S 263 (409)
T ss_dssp EEEEEEGGGTTCEEEEEEC-C----TTSCSCCCBCEECTTSSEEEEE-CT---TCEEEEEETTTCCEEEEEECCCCS--C
T ss_pred eEEEEEcCCCceeEEeeec-c----chhcCCcEEEEEeCCCCeEEEE-EC---CCcEEEEECCCCCEEEEecccccC--C
Confidence 567777776543 222100 0 1012233457899954444443 33 236999999988765442211110 0
Q ss_pred ccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCceeeccccc------C-------e-EEEEEEeEeecCCEEE
Q 008873 139 LHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCLGPITEG------D-------W-MVEQIVGVNEASGQVY 203 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~------~-------~-~~~~~~~~s~dg~~l~ 203 (550)
. ...|.. ...+++ ++.+|+++. +...|++++.++......-.+ + + ....+ .++++|+ ||
T Consensus 264 ~--~~~P~~-~ia~~p~~g~lyv~d~-~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gi-a~d~dG~-ly 337 (409)
T 3hrp_A 264 L--GTNPGP-YLIYYFVDSNFYMSDQ-NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGM-TVDEDGN-FY 337 (409)
T ss_dssp C--CCSSCC-EEEEETTTTEEEEEET-TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEE-EECTTCC-EE
T ss_pred C--CCCccc-cEEEeCCCCEEEEEeC-CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEE-EEeCCCC-EE
Confidence 0 000000 113455 467777765 345799998876522221111 0 1 12333 4888987 77
Q ss_pred EEEc-CCCCceeEEEEEEe
Q 008873 204 FTGT-LDGPLESHLYCAKL 221 (550)
Q Consensus 204 f~~~-~~~~~~~~l~~v~~ 221 (550)
++-. .. ..|+++++
T Consensus 338 vad~~~~----~~I~~~~~ 352 (409)
T 3hrp_A 338 IVDGFKG----YCLRKLDI 352 (409)
T ss_dssp EEETTTT----CEEEEEET
T ss_pred EEeCCCC----CEEEEEEC
Confidence 7754 33 46777774
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.23 Score=44.90 Aligned_cols=205 Identities=12% Similarity=0.122 Sum_probs=102.0
Q ss_pred ccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCC
Q 008873 3 RKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTD 82 (550)
Q Consensus 3 ~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 82 (550)
..+++.|.||+++|.-+ .+.. ..|+.+|+++...+.+.+.
T Consensus 28 ~lSGla~~~~~~~L~aV-~d~~----------------------------------~~I~~ld~~g~v~~~i~l~----- 67 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFST-INKP----------------------------------AAIVEMTTNGDLIRTIPLD----- 67 (255)
T ss_dssp CEEEEEEETTTTEEEEE-EETT----------------------------------EEEEEEETTCCEEEEEECS-----
T ss_pred CcceeEEeCCCCEEEEE-ECCC----------------------------------CeEEEEeCCCCEEEEEecC-----
Confidence 35788899988777444 4421 3578899995545566553
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc-eEEEEEeecCceeeccCccccCCCCCccCCCc-EEEE
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-RKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWA 160 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (550)
. ......+++.+||++++ +..+. ..|+.+++.... ...+....-+ .........+ .+.++++++ -+|+
T Consensus 68 --g-~~D~EGIa~~~~g~~~v-s~E~~---~~l~~~~v~~~~~i~~~~~~~~~-~~~~~~N~g~--EGLA~d~~~~~L~v 137 (255)
T 3qqz_A 68 --F-VKDLETIEYIGDNQFVI-SDERD---YAIYVISLTPNSEVKILKKIKIP-LQESPTNCGF--EGLAYSRQDHTFWF 137 (255)
T ss_dssp --S-CSSEEEEEECSTTEEEE-EETTT---TEEEEEEECTTCCEEEEEEEECC-CSSCCCSSCC--EEEEEETTTTEEEE
T ss_pred --C-CCChHHeEEeCCCEEEE-EECCC---CcEEEEEcCCCCeeeeeeeeccc-cccccccCCc--ceEEEeCCCCEEEE
Confidence 1 12345678999997433 33343 246666554433 2222222111 0000000000 111344433 3333
Q ss_pred EccCCccEEEEEe--CCCceeecc-----cc--cCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCC
Q 008873 161 SEKTGFRHLYLHD--INGTCLGPI-----TE--GDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA 231 (550)
Q Consensus 161 s~~~g~~~l~~~~--~~~~~~~~l-----T~--~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~ 231 (550)
+.......||.++ +.+...+.+ .. .-.+.+.. .++|..+.+|+.+... ..|..++. +|.. ..
T Consensus 138 a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l-~~dp~tg~lliLS~~s----~~L~~~d~--~g~~--~~ 208 (255)
T 3qqz_A 138 FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA-EFNQQKNTLLVLSHES----RALQEVTL--VGEV--IG 208 (255)
T ss_dssp EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE-EEETTTTEEEEEETTT----TEEEEECT--TCCE--EE
T ss_pred EECcCCceEEEEcccccCCceeeecchhhccccccCCceeE-EEcCCCCeEEEEECCC----CeEEEEcC--CCCE--EE
Confidence 4333455788887 122112211 10 11123344 3788888899988754 35666665 4420 01
Q ss_pred CeeeCCC--------CceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 232 PVKLTNG--------KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 232 ~~~lt~~--------~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
...|..+ ..-..++++++|. |.++ +. |-.+|++..
T Consensus 209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE---~n~~y~f~~ 251 (255)
T 3qqz_A 209 EMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SE---PNRFYRFTP 251 (255)
T ss_dssp EEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ET---TTEEEEEEC
T ss_pred EEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cC---CceEEEEEe
Confidence 1122221 1346778999996 4333 44 348888764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.025 Score=55.30 Aligned_cols=139 Identities=11% Similarity=0.035 Sum_probs=65.6
Q ss_pred EEEEEEECCCCceE-EEEcccCCCCCCCCCceeEE--EEECCCCeEEEEEEe--cCCCceEEEEEECCCCceEEEEE--e
Q 008873 59 VRLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLAR--VNWMHGNILTAQVLN--RSQTKLKVLKFDIKTGQRKVILV--E 131 (550)
Q Consensus 59 ~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~--~~wspDg~~i~~~~~--r~~~~~~l~~~~~~~g~~~~l~~--~ 131 (550)
.+|.+||+++++.. .+.++ .....-.. +.++|||+.++.... -..-.+.|+++..+.|+...+.. .
T Consensus 228 d~V~v~D~~~~k~~~tI~vg-------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 228 NRIHFWDLRKRKRIHSLTLG-------EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp CEEEEEETTTTEEEEEEESC-------TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecC-------CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence 47899999987654 44442 11112222 345999997665543 11112345555444465332221 1
Q ss_pred ecCceeeccC----ccc---cCCCCCccCCCc-EEEEEccCCccEEEEEeCC-Cceee---ccccc-Ce-----------
Q 008873 132 ELDSWVNLHD----CFT---PLDKGVTKYSGG-FIWASEKTGFRHLYLHDIN-GTCLG---PITEG-DW----------- 187 (550)
Q Consensus 132 ~~~~~~~~~~----~~~---~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~-~~~~~---~lT~~-~~----------- 187 (550)
........-+ .|. ..+..-..++|+ ++|+|++. ...|.+++.. .++.+ .+..| .+
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg-~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG-IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKL 379 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT-TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC-CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccC
Confidence 1100000000 000 000001234544 99999884 3578888753 32222 22222 10
Q ss_pred --EEEEEEeEeecCCEEEEEE
Q 008873 188 --MVEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 188 --~~~~~~~~s~dg~~l~f~~ 206 (550)
.-..+ .+|+||++||++.
T Consensus 380 ~ggPr~~-~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQML-EISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCE-EECTTSSEEEEEC
T ss_pred CCCCCEE-EEcCCCCEEEEEc
Confidence 01223 4899999999886
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.24 Score=47.10 Aligned_cols=123 Identities=12% Similarity=0.068 Sum_probs=67.8
Q ss_pred eeEEEEECCCCeEEEEEEec-CCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccC--
Q 008873 89 YLARVNWMHGNILTAQVLNR-SQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKT-- 164 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r-~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~-- 164 (550)
....++++|||++++.-... ......|+.+|+++|+...........- ....... ....++ ++.+|+++..
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~----~~~~~~~-~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT----LSNSFVN-DLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS----CTTCCCC-EEEEETTTTEEEEEECCSG
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc----ccccccc-eEEEecCCCEEEEEcCccC
Confidence 55678999999854433221 0012469999999998543333211100 0000000 001233 3577777753
Q ss_pred CccEEEEEeCCCceeeccccc---------------C-------------e--EEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 165 GFRHLYLHDINGTCLGPITEG---------------D-------------W--MVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~---------------~-------------~--~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
+...|+++++++++..++..+ . | ....+ .+|+||+.||+..... .
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gi-a~s~dg~~ly~~~~~~----~ 217 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGI-VLDAENEWLYLSPMHS----T 217 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEE-EECTTSCEEEEEESSC----S
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceeccccee-EeccCCCEEEEEeCCC----C
Confidence 456889999876554332211 0 1 12334 4899999999886643 4
Q ss_pred EEEEEEe
Q 008873 215 HLYCAKL 221 (550)
Q Consensus 215 ~l~~v~~ 221 (550)
.||+++.
T Consensus 218 ~l~~~~~ 224 (343)
T 2qe8_A 218 SMYRIKS 224 (343)
T ss_dssp EEEEEEH
T ss_pred eEEEEEH
Confidence 7899885
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.063 Score=52.39 Aligned_cols=55 Identities=13% Similarity=-0.067 Sum_probs=32.2
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 125 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~ 125 (550)
.+.+||+.++....... .....+..++|+|++..++.....+. .|.+.|+.+++.
T Consensus 167 tv~~Wd~~~~~~~~~~~--------~~~~~v~~v~~~p~~~~~l~~~~~d~---~v~~wd~~t~~~ 221 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGY--------PLSSPGISVQFRPSNPNQLIVGERNG---NIRIFDWTLNLS 221 (393)
T ss_dssp EEEEEEEETTEEEEEEE--------ECSSCEEEEEEETTEEEEEEEEETTS---EEEEEETTCCC-
T ss_pred eEEEEECCCCceeeeec--------CCCCCcEEEEECCCCCceEEecCCCC---EEEEEECCCCcc
Confidence 36778987765432222 12335678999999874433333322 366678887764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.071 Score=50.83 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=69.9
Q ss_pred EEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCC----CeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC
Q 008873 60 RLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHG----NILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD 134 (550)
Q Consensus 60 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspD----g~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~ 134 (550)
.|.+||+.+++. ..+..... ......+..++|+|| |++++...... .|.+.++.+++..........
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~~ 116 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVD----ADADENFYTCAWTYDSNTSHPLLAVAGSRG----IIRIINPITMQCIKHYVGHGN 116 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEEC----SCTTCCEEEEEEEECTTTCCEEEEEEETTC----EEEEECTTTCCEEEEEESCCS
T ss_pred EEEEEEcCCCcEEEeeeeccc----cCCCCcEEEEEeccCCCCCCCEEEEecCCC----EEEEEEchhceEeeeecCCCC
Confidence 357788886544 33321100 112356788999999 66776665332 488889998876544331111
Q ss_pred ceeeccCccccCCCCCccCC-Cc-EEEEEccCCccEEEEEeCCCceee-cc---cccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 135 SWVNLHDCFTPLDKGVTKYS-GG-FIWASEKTGFRHLYLHDINGTCLG-PI---TEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~s~~~g~~~l~~~~~~~~~~~-~l---T~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
.+.. + .+++ ++ +++....+| .|.++++.+++.. .+ ......+.... |+++++.|+..+..
T Consensus 117 -~i~~---~-------~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d 182 (366)
T 3k26_A 117 -AINE---L-------KFHPRDPNLLLSVSKDH--ALRLWNIQTDTLVAIFGGVEGHRDEVLSAD-YDLLGEKIMSCGMD 182 (366)
T ss_dssp -CEEE---E-------EECSSCTTEEEEEETTS--CEEEEETTTTEEEEEECSTTSCSSCEEEEE-ECTTSSEEEEEETT
T ss_pred -cEEE---E-------EECCCCCCEEEEEeCCC--eEEEEEeecCeEEEEecccccccCceeEEE-ECCCCCEEEEecCC
Confidence 1110 1 2333 33 555544445 4667777665433 33 23344455554 99999877765543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.11 Score=49.85 Aligned_cols=168 Identities=8% Similarity=0.009 Sum_probs=89.0
Q ss_pred EEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC-ce-EEEEEeecCce
Q 008873 60 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG-QR-KVILVEELDSW 136 (550)
Q Consensus 60 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g-~~-~~l~~~~~~~~ 136 (550)
.|.+||+.+++... +.. ...+..+.|++++..+ ..+ ..|++.++.++ +. ..+.. .. ..
T Consensus 82 ~v~iWd~~~~~~~~~~~~----------~~~v~~v~~~~~~~~~--~~~-----~~i~i~d~~~~~~~~~~~~~-~~-~~ 142 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIKV----------DAPVKDLFLSREFIVV--SYG-----DVISVFKFGNPWKRITDDIR-FG-GV 142 (355)
T ss_dssp EEEEEETTTTEEEEEEEC----------SSCEEEEEECSSEEEE--EET-----TEEEEEESSTTCCBSSCCEE-EE-EE
T ss_pred EEEEEECCCCcEEEEEEC----------CCceEEEEEcCCEEEE--EEc-----CEEEEEECCCCceeeEEecc-CC-ce
Confidence 67889999886543 322 2356788999885433 221 13777788776 32 22211 10 00
Q ss_pred eeccCccccCCCCCccCCCcEEEE-EccCCccEEEEEeCCCce-----------------eecccccCeEEEEEEeEeec
Q 008873 137 VNLHDCFTPLDKGVTKYSGGFIWA-SEKTGFRHLYLHDINGTC-----------------LGPITEGDWMVEQIVGVNEA 198 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~-s~~~g~~~l~~~~~~~~~-----------------~~~lT~~~~~~~~~~~~s~d 198 (550)
. ..++..+++. ...+| .|.++|..+++ .+.+..+...+.... |+||
T Consensus 143 ~-------------~~s~~~la~~sg~~~g--~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~-~s~~ 206 (355)
T 3vu4_A 143 C-------------EFSNGLLVYSNEFNLG--QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR-LNRK 206 (355)
T ss_dssp E-------------EEETTEEEEEESSCTT--CEEEEECCC------------------CCEEECCCSSCEEEEE-ECTT
T ss_pred E-------------EEEccEEEEeCCCcCc--EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE-ECCC
Confidence 0 0112223333 23344 45566655433 333444444555554 9999
Q ss_pred CCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC---CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 199 SGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT---NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 199 g~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt---~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
|+.|+-.+. ++. ...|| ++. .+. ....+. .......+.|+|||++|+....+ ..+.+.++.++.
T Consensus 207 g~~l~s~s~-d~~-~v~iw--d~~-~~~----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d----~~v~iw~~~~~~ 273 (355)
T 3vu4_A 207 SDMVATCSQ-DGT-IIRVF--KTE-DGV----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDK----WTLHVFEIFNDQ 273 (355)
T ss_dssp SSEEEEEET-TCS-EEEEE--ETT-TCC----EEEEEECTTCCSCEEEEEECTTSCEEEEEETT----CEEEEEESSCCS
T ss_pred CCEEEEEeC-CCC-EEEEE--ECC-CCc----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECC----CEEEEEEccCCC
Confidence 987665444 321 03444 652 232 234444 23347778999999987655433 478888876553
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.009 Score=60.93 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=56.2
Q ss_pred cCCCcEEEEEccCCccEEEEEeCCCce-e-ecccccCeEEEEEE-eEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC
Q 008873 152 KYSGGFIWASEKTGFRHLYLHDINGTC-L-GPITEGDWMVEQIV-GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT 228 (550)
Q Consensus 152 ~~~~~~~~~s~~~g~~~l~~~~~~~~~-~-~~lT~~~~~~~~~~-~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~ 228 (550)
|++++.++....+| .|.+.|+.+++ . ..+..+.-.+..+. .++++|..+++++..++ ...|| ++. ++.
T Consensus 274 ~s~~~~lasgs~Dg--tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~--tvklW--D~~-~~~-- 344 (524)
T 2j04_B 274 FLSPTTVVCGFKNG--FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG--YFYIF--NPK-DIA-- 344 (524)
T ss_dssp ESSSSEEEEEETTS--EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS--EEEEE--CGG-GHH--
T ss_pred ecCCCeEEEEeCCC--EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC--eEEEE--ECC-CCC--
Confidence 34444555444444 56677766442 2 12333343455552 36777745656666554 25555 541 111
Q ss_pred CCCCeeeCC--C-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeE
Q 008873 229 LEAPVKLTN--G-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVL 278 (550)
Q Consensus 229 ~~~~~~lt~--~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~ 278 (550)
.+..+.. . .....++|+|+++.++....+ ..+.+.++.++..+.
T Consensus 345 --~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d----~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 345 --TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA----SSLRAVPSRAAFAVH 391 (524)
T ss_dssp --HHCEEEEECSCCSCCCEEEETTTTEEEEECSS----SEEEEEETTCTTCCE
T ss_pred --cccccccccccCcccceEeCCCcCeEEEeCCC----CcEEEEECcccccce
Confidence 1111111 1 113457899999876543222 257777876665433
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.06 Score=49.01 Aligned_cols=150 Identities=10% Similarity=0.104 Sum_probs=73.4
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEE
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHL 169 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l 169 (550)
...++++|||++++. ... ..|+.++.+++....+... .... + .....++++-+|+++. +...|
T Consensus 69 p~~i~~~~~g~l~v~--~~~---~~i~~~d~~~~~~~~~~~~-~~~~--------p--~~i~~~~~g~l~v~~~-~~~~i 131 (270)
T 1rwi_B 69 PQGLAVDGAGTVYVT--DFN---NRVVTLAAGSNNQTVLPFD-GLNY--------P--EGLAVDTQGAVYVADR-GNNRV 131 (270)
T ss_dssp CCCEEECTTCCEEEE--ETT---TEEEEECTTCSCCEECCCC-SCSS--------E--EEEEECTTCCEEEEEG-GGTEE
T ss_pred cceeEECCCCCEEEE--cCC---CEEEEEeCCCceEeeeecC-CcCC--------C--cceEECCCCCEEEEEC-CCCEE
Confidence 345789999984332 222 2589999887765433211 0000 0 0001234444555543 23467
Q ss_pred EEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC--CceEEEEE
Q 008873 170 YLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG--KGKHVAVL 246 (550)
Q Consensus 170 ~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~--~~~~~~~~ 246 (550)
++++..+........... ....+ .++++|+ ||+..... ..|++++. ++. ........ .....+.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~p~~i-~~~~~g~-l~v~~~~~----~~i~~~~~--~~~----~~~~~~~~~~~~p~~i~~ 199 (270)
T 1rwi_B 132 VKLAAGSKTQTVLPFTGLNDPDGV-AVDNSGN-VYVTDTDN----NRVVKLEA--ESN----NQVVLPFTDITAPWGIAV 199 (270)
T ss_dssp EEECTTCCSCEECCCCSCCSCCCE-EECTTCC-EEEEEGGG----TEEEEECT--TTC----CEEECCCSSCCSEEEEEE
T ss_pred EEEECCCceeEeeccccCCCceeE-EEeCCCC-EEEEECCC----CEEEEEec--CCC----ceEeecccCCCCceEEEE
Confidence 787654432222221111 12223 3778886 77765432 36777776 432 12222111 23456678
Q ss_pred CCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 247 DHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 247 s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
+++|. +.+.... ...|++++..
T Consensus 200 d~~g~-l~v~~~~---~~~v~~~~~~ 221 (270)
T 1rwi_B 200 DEAGT-VYVTEHN---TNQVVKLLAG 221 (270)
T ss_dssp CTTCC-EEEEETT---TSCEEEECTT
T ss_pred CCCCC-EEEEECC---CCcEEEEcCC
Confidence 88884 3333221 1357777763
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.2 Score=54.74 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=37.6
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceE
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRK 126 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~ 126 (550)
.|.+||+++++.. .+.. ...+..++|+|||+.++...... .|.+.|+++++..
T Consensus 80 ~v~lWd~~~~~~~~~~~~----------~~~V~~v~~sp~g~~l~sgs~dg----~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 80 TVYVLSLYSQKVLTTVFV----------PGKITSIDTDASLDWMLIGLQNG----SMIVYDIDRDQLS 133 (902)
T ss_dssp EEEEEETTTCSEEEEEEC----------SSCEEEEECCTTCSEEEEEETTS----CEEEEETTTTEEE
T ss_pred eEEEEECCCCcEEEEEcC----------CCCEEEEEECCCCCEEEEEcCCC----cEEEEECCCCccc
Confidence 4788999988654 2321 23578899999999887765433 3777888888753
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.34 Score=50.41 Aligned_cols=163 Identities=8% Similarity=-0.021 Sum_probs=88.7
Q ss_pred EEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCcc-E
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFR-H 168 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~-~ 168 (550)
..++..+.++.|+.+. .. ...|.++++++...+.|....... |. ....++ .+++|.+|.+... .
T Consensus 392 ~glAvD~~~~nLY~td-~~--~~~I~v~~~~G~~~~~l~~~~l~~-----Pr------~iavdp~~g~ly~tD~g~~~~~ 457 (628)
T 4a0p_A 392 YDLSIDIYSRYIYWTC-EA--TNVINVTRLDGRSVGVVLKGEQDR-----PR------AVVVNPEKGYMYFTNLQERSPK 457 (628)
T ss_dssp EEEEEETTTTEEEEEE-TT--TTEEEEEETTSCEEEEEEECTTCC-----EE------EEEEETTTTEEEEEEEETTEEE
T ss_pred ceEEeeccCCeEEEEc-CC--CCEEEEEECCCCeEEEEEeCCCCc-----ee------eEEEecCCCeEEEeecCCCCCe
Confidence 4556666777665543 22 225888888765444444321110 00 001233 5688888864443 8
Q ss_pred EEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEEC
Q 008873 169 LYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLD 247 (550)
Q Consensus 169 l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s 247 (550)
|++.+++|...+.|...+. ....+ .++++++.||+.-... ..|+++++ +|. ..+.+......+...+.
T Consensus 458 I~r~~~dG~~~~~l~~~~l~~P~gl-a~D~~~~~LYw~D~~~----~~I~~~~~--dG~----~r~~~~~~~~~~P~gla 526 (628)
T 4a0p_A 458 IERAALDGTEREVLFFSGLSKPIAL-ALDSRLGKLFWADSDL----RRIESSDL--SGA----NRIVLEDSNILQPVGLT 526 (628)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEE-EEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEECSSCSCEEEEE
T ss_pred EEEEeCCCCCcEEEEeccCCCccEE-EEeCCCCEEEEEeCCC----CEEEEEeC--CCC----ceEEEEcCCCCCcEEEE
Confidence 9999999987766655332 12334 4788888999986544 36888898 665 23333322111222222
Q ss_pred CCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 248 HNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 248 ~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
-++..++++-. .-..|++++..+|+..+.+.
T Consensus 527 v~~~~ly~tD~---~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 527 VFENWLYWIDK---QQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EETTEEEEEET---TTTEEEEEETTSSSCCEEEE
T ss_pred EECCEEEEEEC---CCCeEEEEECcCCCCcEEEe
Confidence 23345544432 22477777776666544443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.047 Score=50.34 Aligned_cols=181 Identities=8% Similarity=-0.028 Sum_probs=93.8
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|+++|.++|+.. ++... .......+..+|||++++ . . ...|+.++. +|+..--..........
T Consensus 16 ~v~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~pdG~ilv-s-~----~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 16 KIAIINKDTKEIVWEYPLE--------KGWECNSVAATKAGEILF-S-Y----SKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp EEEEEETTTTEEEEEEECC--------TTCCCCEEEECTTSCEEE-E-C----BSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred EEEEEECCCCeEEEEeCCC--------ccCCCcCeEECCCCCEEE-e-C----CCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 5788999888764 34321 112344578999999776 2 2 124889999 56533222211111110
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeeccccc-----C-eEEEEEEeEeecCCEEEEEEcCCCCc
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-----D-WMVEQIVGVNEASGQVYFTGTLDGPL 212 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~-----~-~~~~~~~~~s~dg~~l~f~~~~~~~~ 212 (550)
.. ...+++-+++++......|+.++.+|.....+... . ..... ...+++|+.|+ +...+
T Consensus 81 -----~~-----~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~-v~~~~~G~~lv-~~~~~--- 145 (276)
T 3no2_A 81 -----TA-----RILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQ-INKNKKGNYLV-PLFAT--- 145 (276)
T ss_dssp -----EE-----EECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSC-CEECTTSCEEE-EETTT---
T ss_pred -----cc-----EECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccC-ceECCCCCEEE-EecCC---
Confidence 00 12344423333332245788888877654433211 0 00011 13567887554 33332
Q ss_pred eeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 213 ESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 213 ~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
..|+.++. .|+ ..-.+......+...+.++|..++....+ ..++.++..+|+.+..+.
T Consensus 146 -~~v~~~d~--~G~----~~w~~~~~~~~~~~~~~~~g~~~v~~~~~----~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 146 -SEVREIAP--NGQ----LLNSVKLSGTPFSSAFLDNGDCLVACGDA----HCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp -TEEEEECT--TSC----EEEEEECSSCCCEEEECTTSCEEEECBTT----SEEEEECTTTCCEEEEEE
T ss_pred -CEEEEECC--CCC----EEEEEECCCCccceeEcCCCCEEEEeCCC----CeEEEEeCcCCcEEEEec
Confidence 35777776 443 22222222234455677888876554332 479999988788655554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.081 Score=47.77 Aligned_cols=167 Identities=12% Similarity=0.026 Sum_probs=90.9
Q ss_pred EEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 61 LGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 61 l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
|.++|+++++.. .+ ++ . .+ .....+++|+.|+.+..+. ..++++|.++++...-..-...+|-
T Consensus 77 v~~iD~~Tgkv~~~~-l~-------~--~~-FgeGit~~g~~Ly~ltw~~---~~v~V~D~~Tl~~~~ti~~~~eGwG-- 140 (268)
T 3nok_A 77 LRQLSLESAQPVWME-RL-------G--NI-FAEGLASDGERLYQLTWTE---GLLFTWSGMPPQRERTTRYSGEGWG-- 140 (268)
T ss_dssp EEECCSSCSSCSEEE-EC-------T--TC-CEEEEEECSSCEEEEESSS---CEEEEEETTTTEEEEEEECSSCCCC--
T ss_pred EEEEECCCCcEEeEE-CC-------C--Cc-ceeEEEEeCCEEEEEEccC---CEEEEEECCcCcEEEEEeCCCceeE--
Confidence 777888887764 33 32 1 11 1112345677666654443 3699999999876432222223331
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCcee-eccc--ccCeEE---EEEEeEeecCCEEEEEEcCCCCce
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPIT--EGDWMV---EQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~-~~lT--~~~~~~---~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
.+++ ++.+|.|+ |-..|+.+|.++.+. +.+. .....+ ... .|. +| .||......
T Consensus 141 ----------Lt~D-g~~L~vSd--Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL-e~~-dG-~lyanvw~s---- 200 (268)
T 3nok_A 141 ----------LCYW-NGKLVRSD--GGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL-ECA-NG-VIYANIWHS---- 200 (268)
T ss_dssp ----------EEEE-TTEEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEE-EEE-TT-EEEEEETTC----
T ss_pred ----------EecC-CCEEEEEC--CCCEEEEEcCCCCeEEEEEEeCCCCccccccccc-EEe-CC-EEEEEECCC----
Confidence 1122 24777887 466899999877543 3332 222221 222 244 55 677554332
Q ss_pred eEEEEEEeCCCCCCCCCCCeeeC--------------CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 214 SHLYCAKLYPDWNHTLEAPVKLT--------------NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 214 ~~l~~v~~~~~g~~~~~~~~~lt--------------~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
..|.++|.. +|. ....+. .......++++|+++.|..+.-.+ |.+|.+.+
T Consensus 201 ~~I~vIDp~-TG~----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W---p~~~ev~~ 264 (268)
T 3nok_A 201 SDVLEIDPA-TGT----VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW---PRLFEVRL 264 (268)
T ss_dssp SEEEEECTT-TCB----EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC---SEEEEEEE
T ss_pred CeEEEEeCC-CCc----EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC---CceEEEEE
Confidence 378888873 332 111111 112346678999988887776555 56776654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.28 Score=46.35 Aligned_cols=184 Identities=10% Similarity=0.010 Sum_probs=84.6
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEee-cCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceE-EEEcccCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMH-QGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVS-WMDLQCGGTD 82 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~ 82 (550)
+.+.+||||+.++=.......+....++. .+... +-..|... ..|.+||+++|+.. .+.-.
T Consensus 160 ~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~----------~LaSgS~D--~TIkIWDl~TGk~l~tL~g~----- 222 (356)
T 2w18_A 160 EVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE----------ALLGTTIM--NNIVIWNLKTGQLLKKMHID----- 222 (356)
T ss_dssp EEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT----------EEEEEETT--SEEEEEETTTCCEEEEEECC-----
T ss_pred EEEEECCCCceeeeeccCCCceeeEEeeccCCCCc----------eEEEecCC--CcEEEEECCCCcEEEEEcCC-----
Confidence 34568899988774444444444433333 11100 00001111 35788999999753 34211
Q ss_pred CCCCCceeEEEEECCCCeEEEEEEec--------CCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC
Q 008873 83 QNYDEEYLARVNWMHGNILTAQVLNR--------SQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 83 ~~~~~~~~~~~~wspDg~~i~~~~~r--------~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
......+...++||||+.++..... ......|-+.+.++|+...+..-.- +.+..-.+... ..+
T Consensus 223 -~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~----p~Gh~~~~lsg--~~s- 294 (356)
T 2w18_A 223 -DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL----PPGQAGRFLEG--DVK- 294 (356)
T ss_dssp -C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC----CTTCCCCEEEE--EEE-
T ss_pred -CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec----cCCCcceeEcc--ccC-
Confidence 0011245566899999977654321 1112345556788877543321100 00000000000 000
Q ss_pred CcEEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 155 GGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 155 ~~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
+.++.....+| .|.+.|+.+++. ..|+.+...+.....|||||+.|+ ++..++. ..||.
T Consensus 295 g~~lASgS~Dg--TIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La-SGS~D~T--IklWd 354 (356)
T 2w18_A 295 DHCAAAILTSG--TIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL-AGQKDGN--IFVYH 354 (356)
T ss_dssp TTEEEEEETTS--CEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE-EECTTSC--EEEEE
T ss_pred CCEEEEEcCCC--cEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE-EEECCCc--EEEec
Confidence 11222222233 577888877653 455533222222235999998766 4444442 56664
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.085 Score=52.20 Aligned_cols=132 Identities=13% Similarity=0.007 Sum_probs=74.0
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC-CCceEEEEEECCCCce--EEEEEeecCce
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS-QTKLKVLKFDIKTGQR--KVILVEELDSW 136 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~-~~~~~l~~~~~~~g~~--~~l~~~~~~~~ 136 (550)
.|+++|+++++...+.. .......+++++||+ |++..... .....++.++..++.. ..+.....
T Consensus 163 ~I~~id~~~g~v~~~~~---------~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~--- 229 (433)
T 4hw6_A 163 AFRHVDFVNQYVDIKTT---------NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARG--- 229 (433)
T ss_dssp CEEEEETTTTEEEEECC---------CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSS---
T ss_pred CEEEEECCCCEEEEeec---------CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCC---
Confidence 36788998887766521 123456789999999 44433211 1233466666555432 12211100
Q ss_pred eeccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCCCcee-ecc-ccc--CeEEEEEEeEeecCCEEEEEEcCCCC
Q 008873 137 VNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDINGTCL-GPI-TEG--DWMVEQIVGVNEASGQVYFTGTLDGP 211 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~~~~~-~~l-T~~--~~~~~~~~~~s~dg~~l~f~~~~~~~ 211 (550)
| .....++ ++.+|+++. +...|++++++++.. +.+ +.+ .+. .. ..++++|+.||++-...
T Consensus 230 --------P--~giavd~~~G~lyv~d~-~~~~V~~~d~~~g~~~~~~~~~~~~~~~-~~-ia~dpdG~~LYvad~~~-- 294 (433)
T 4hw6_A 230 --------A--KTCAVHPQNGKIYYTRY-HHAMISSYDPATGTLTEEEVMMDTKGSN-FH-IVWHPTGDWAYIIYNGK-- 294 (433)
T ss_dssp --------B--CCCEECTTTCCEEECBT-TCSEEEEECTTTCCEEEEEEECSCCSSC-EE-EEECTTSSEEEEEETTT--
T ss_pred --------C--CEEEEeCCCCeEEEEEC-CCCEEEEEECCCCeEEEEEeccCCCCCc-cc-EEEeCCCCEEEEEeCCC--
Confidence 1 0012344 566777665 345799999875554 333 222 221 12 45999999999886644
Q ss_pred ceeEEEEEEe
Q 008873 212 LESHLYCAKL 221 (550)
Q Consensus 212 ~~~~l~~v~~ 221 (550)
..|++++.
T Consensus 295 --~~I~~~~~ 302 (433)
T 4hw6_A 295 --HCIYRVDY 302 (433)
T ss_dssp --TEEEEEEB
T ss_pred --CEEEEEeC
Confidence 46888887
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.44 Score=44.91 Aligned_cols=164 Identities=12% Similarity=0.128 Sum_probs=75.7
Q ss_pred EEEEECCCCceEEEE-cccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc-----eEEEEEeec-
Q 008873 61 LGVVSAAGGPVSWMD-LQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ-----RKVILVEEL- 133 (550)
Q Consensus 61 l~~~d~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~-----~~~l~~~~~- 133 (550)
|.+||++++....+. +.. ..-...+..++|+|||++++...... .-.|| +.+.+. .+.+....+
T Consensus 36 i~lw~~~~~~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~las~s~D~--~v~iw--~~~~~~~~~~~~~~~~~~~~h 106 (330)
T 2hes_X 36 IKLVSVKYDDFTLIDVLDE-----TAHKKAIRSVAWRPHTSLLAAGSFDS--TVSIW--AKEESADRTFEMDLLAIIEGH 106 (330)
T ss_dssp EEEEECSSSCCEEEEEECT-----TCCCSCEEEEEECTTSSEEEEEETTS--CEEEE--EC-------CCCEEEEEEC--
T ss_pred EEEEEecCCCeEEEEEEec-----CCccCCEEEEEECCCCCEEEEEeCCC--cEEEE--EcccCcCccccceeEEEEcCC
Confidence 577888875432221 110 11234678899999999887765432 22344 443211 112211111
Q ss_pred CceeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCC-C-ce---eecccccCeEEEEEEeEeecCCEEEEEEc
Q 008873 134 DSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDIN-G-TC---LGPITEGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~-~-~~---~~~lT~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
...+. -+ .|++++ +++....+|. |.+.+.. + .. ...+......+.... |+|+++.|+-.+.
T Consensus 107 ~~~V~------~v----~~sp~g~~las~s~D~~--v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~ 173 (330)
T 2hes_X 107 ENEVK------GV----AWSNDGYYLATCSRDKS--VWIWETDESGEEYECISVLQEHSQDVKHVI-WHPSEALLASSSY 173 (330)
T ss_dssp --CEE------EE----EECTTSCEEEEEETTSC--EEEEECCTTCCCCEEEEEECCCSSCEEEEE-ECSSSSEEEEEET
T ss_pred CCcEE------EE----EECCCCCEEEEEeCCCE--EEEEeccCCCCCeEEEEEeccCCCceEEEE-ECCCCCEEEEEcC
Confidence 01110 00 234544 5555444554 4444542 2 11 223443444455554 9999986654444
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCC--CCEEE
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHN--MRNFV 254 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~d--g~~l~ 254 (550)
++ ...||.+.. ... .....+... .....+.|+|+ +..|+
T Consensus 174 -D~--~i~iW~~~~--~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 174 -DD--TVRIWKDYD--DDW---ECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp -TS--CEEEEEEET--TEE---EEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred -CC--eEEEEECCC--CCe---eEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 33 256775432 110 012233322 23566789998 44443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.14 Score=51.01 Aligned_cols=170 Identities=10% Similarity=0.039 Sum_probs=86.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+.+++.... + ......+..+.|+|||+.++...... .|.+.++.+|+......... ..+.
T Consensus 291 ~i~vwd~~~~~~~~~-~-------~~~~~~v~~~~~~~~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~h~-~~v~- 356 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYI-L-------SGHTDRIYSTIYDHERKRCISASMDT----TIRIWDLENGELMYTLQGHT-ALVG- 356 (464)
T ss_dssp CEEEEETTTTEEEEE-E-------CCCSSCEEEEEEETTTTEEEEEETTS----CEEEEETTTTEEEEEECCCS-SCEE-
T ss_pred eEEEEECCCCcEEEE-e-------cCCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCcEEEEEeCCC-CcEE-
Confidence 378889998765432 1 12245678899999999887665433 37888898887543332111 1110
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEE
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 219 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v 219 (550)
.+ .+++ .+++....+| .|.++++.+++..........+. ...++++++.|+..+ ++ .|...
T Consensus 357 --~~-------~~~~-~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~--dg----~i~iw 417 (464)
T 3v7d_B 357 --LL-------RLSD-KFLVSAAADG--SIRGWDANDYSRKFSYHHTNLSA-ITTFYVSDNILVSGS--EN----QFNIY 417 (464)
T ss_dssp --EE-------EECS-SEEEEEETTS--EEEEEETTTCCEEEEEECTTCCC-EEEEEECSSEEEEEE--TT----EEEEE
T ss_pred --EE-------EEcC-CEEEEEeCCC--cEEEEECCCCceeeeecCCCCcc-EEEEEeCCCEEEEec--CC----eEEEE
Confidence 01 1233 3444444444 46677766544322222221122 235889988666554 32 34444
Q ss_pred EeCCCCCCCCCCCee-eCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEE
Q 008873 220 KLYPDWNHTLEAPVK-LTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCS 270 (550)
Q Consensus 220 ~~~~~g~~~~~~~~~-lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 270 (550)
++. .+. .... +.. ......+.|+ ++.++...++ +....++++|
T Consensus 418 d~~-~g~----~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~-~g~~~i~~ld 462 (464)
T 3v7d_B 418 NLR-SGK----LVHANILKDADQIWSVNFK--GKTLVAAVEK-DGQSFLEILD 462 (464)
T ss_dssp ETT-TCC----EEESCTTTTCSEEEEEEEE--TTEEEEEEEE-TTEEEEEEEE
T ss_pred ECC-CCc----EEehhhccCCCcEEEEEec--CCEEEEEEEe-CCeEEEEEee
Confidence 662 232 1111 111 2234555664 6666655543 2223444444
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.07 Score=50.18 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=47.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEE-EcccCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM-DLQCGGTDQ 83 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~ 83 (550)
.++.|||||++||=...| ..|.+||+.+++...+ ++
T Consensus 17 ~~v~~s~~g~~lasgs~D------------------------------------~~v~lwd~~~~~~~~~~~l------- 53 (316)
T 3bg1_A 17 HDAQMDYYGTRLATCSSD------------------------------------RSVKIFDVRNGGQILIADL------- 53 (316)
T ss_dssp EEEEECGGGCEEEEEETT------------------------------------TEEEEEEEETTEEEEEEEE-------
T ss_pred EEeeEcCCCCEEEEEeCC------------------------------------CeEEEEEecCCCcEEEEEE-------
Confidence 567899999998765433 1357788887653222 22
Q ss_pred CCCCceeEEEEECCC--CeEEEEEEecCCCceEEEEEECCCCceEE
Q 008873 84 NYDEEYLARVNWMHG--NILTAQVLNRSQTKLKVLKFDIKTGQRKV 127 (550)
Q Consensus 84 ~~~~~~~~~~~wspD--g~~i~~~~~r~~~~~~l~~~~~~~g~~~~ 127 (550)
..-...+..++|+|+ |+.|+...... .|.+-++.+++...
T Consensus 54 ~gH~~~V~~v~~~~~~~~~~l~s~s~D~----~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 54 RGHEGPVWQVAWAHPMYGNILASCSYDR----KVIIWREENGTWEK 95 (316)
T ss_dssp ECCSSCEEEEEECCGGGSSCEEEEETTS----CEEEECCSSSCCCE
T ss_pred cCCCccEEEEEeCCCCCCCEEEEEECCC----EEEEEECCCCcceE
Confidence 222446788999874 77777665332 25556777775433
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.092 Score=48.35 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=63.3
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+++|.++.....+... ........++++|||++++. +.. ...|++++.++.....+.. .+...
T Consensus 143 ~i~~~~~~g~~~~~~~~~-------~~~~~p~~i~~~~~g~l~v~--~~~--~~~i~~~~~~g~~~~~~~~-~g~~~--- 207 (286)
T 1q7f_A 143 RVIIFDQNGNVLHKFGCS-------KHLEFPNGVVVNDKQEIFIS--DNR--AHCVKVFNYEGQYLRQIGG-EGITN--- 207 (286)
T ss_dssp EEEEECTTSCEEEEEECT-------TTCSSEEEEEECSSSEEEEE--EGG--GTEEEEEETTCCEEEEESC-TTTSC---
T ss_pred EEEEEcCCCCEEEEeCCC-------CccCCcEEEEECCCCCEEEE--ECC--CCEEEEEcCCCCEEEEEcc-CCccC---
Confidence 466666554433333221 11224567899999984432 222 2258888886543333211 10000
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccC-e-EEEEEEeEeecCCEEEEEE
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-W-MVEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~-~-~~~~~~~~s~dg~~l~f~~ 206 (550)
.| .....++++-+|+++......|.+++.++...+.+..+. . ....+ .++++| .||++.
T Consensus 208 ----~p--~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i-~~~~~g-~l~vs~ 268 (286)
T 1q7f_A 208 ----YP--IGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDV-ALMDDG-SVVLAS 268 (286)
T ss_dssp ----SE--EEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEE-EEETTT-EEEEEE
T ss_pred ----CC--cEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeE-EECCCC-cEEEEC
Confidence 00 001234556566666533347889998776655554432 1 12334 488888 477774
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.24 Score=52.93 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=89.5
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCC----ceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccC
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTG----QRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 164 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 164 (550)
....++|.+.+..|+++ +... ..|+++++++. ..+.+.... . ..|..-...|.. +-+|+++.
T Consensus 425 ~~~gl~~d~~~~~lY~s-D~~~--~~I~~~~l~g~~~~~~~~~vi~~~-l--------~~P~GLAvD~~~-~~LY~tD~- 490 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWS-DLSQ--RMICSTQLDRAHGVSSYDTVISRD-I--------QAPDGLAVDWIH-SNIYWTDS- 490 (791)
T ss_dssp SEEEEEEETTTTEEEEE-ETTT--TEEEEEEC--------CEEEECSS-C--------SCCCEEEEETTT-TEEEEEET-
T ss_pred ceEEEeecccCCeeEEe-eccc--eeEEEEeccCCCCCcceeEEEecC-C--------CCcceeeeeecC-CcEEEEec-
Confidence 34567888865555444 3332 25888888763 223332210 0 001000001222 25566664
Q ss_pred CccEEEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC--Cce
Q 008873 165 GFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG--KGK 241 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~--~~~ 241 (550)
+...|++++++|...+.|..... ...+++ +++.++.||++-.... ..|+++++ +|. ..+.+... ..-
T Consensus 491 ~~~~I~v~~ldG~~~~~l~~~~l~~P~gIa-VDp~~g~LYwtD~g~~---~~I~~~~~--dG~----~~~~lv~~~l~~P 560 (791)
T 3m0c_C 491 VLGTVSVADTKGVKRKTLFRENGSKPRAIV-VDPVHGFMYWTDWGTP---AKIKKGGL--NGV----DIYSLVTENIQWP 560 (791)
T ss_dssp TTTEEEEEETTSSSEEEEEECTTCCEEEEE-EETTTTEEEEEECSSS---CEEEEEET--TSC----CEEEEECSSCSCE
T ss_pred CCCeEEEEeCCCCeEEEEEeCCCCCcceEE-EecCCCCEEEecCCCC---CeEEEEec--CCC----ceEEEEeCCCCCc
Confidence 44589999999877665544322 234444 8888889999864332 47889998 665 22333322 124
Q ss_pred EEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 242 HVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 242 ~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
..+++++.++.|+++-.. ...|+++++ +|+..+.+
T Consensus 561 ~GLavD~~~~~LYwaD~~---~~~I~~~d~-dG~~~~~v 595 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSK---LHSISSIDV-NGGNRKTI 595 (791)
T ss_dssp EEEEEETTTTEEEEEETT---TTEEEEEET-TSCSCEEE
T ss_pred eEEEEecCCCeEEEEeCC---CCcEEEEec-CCCceEEE
Confidence 556788777777666332 358999998 45444444
|
| >1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium camemberti} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.014 Score=53.97 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcC
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQG 407 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 407 (550)
.-+||.+||... ..+++...++.+...+....+.-..-|..... . ..+++...++.+.++.
T Consensus 74 ~~iVvafRGT~~--------------~~d~~~d~~~~~~~~~~~~~~~vh~Gf~~~~~-~----~~~~~~~~l~~~~~~~ 134 (279)
T 1tia_A 74 SAVVLAFRGSYS--------------VRNWVADATFVHTNPGLCDGCLAELGFWSSWK-L----VRDDIIKELKEVVAQN 134 (279)
T ss_pred CEEEEEEeCcCC--------------HHHHHHhCCcEeecCCCCCCCccChhHHHHHH-H----HHHHHHHHHHHHHHHC
Confidence 468888998421 24566677777766554221111111222211 1 1456666677666542
Q ss_pred CCCCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCc
Q 008873 408 LAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPV 446 (550)
Q Consensus 408 ~~d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~ 446 (550)
...+|.+.|||+||.+|..++..... .+.+..-.+|-
T Consensus 135 --p~~~i~vtGHSLGGalA~l~a~~l~~~g~~~v~~~tfg~Pr 175 (279)
T 1tia_A 135 --PNYELVVVGHSLGAAVATLAATDLRGKGYPSAKLYAYASPR 175 (279)
T ss_pred --CCCeEEEEecCHHHHHHHHHHHHHHhcCCCceeEEEeCCCC
Confidence 23589999999999999888875321 14444445553
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.59 Score=46.32 Aligned_cols=183 Identities=13% Similarity=0.123 Sum_probs=96.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+.+++.... + ......+..++|+||+ .++...... .|.+.++++++.......... .+..
T Consensus 143 ~i~vwd~~~~~~~~~-~-------~~h~~~V~~l~~~~~~-~l~s~s~dg----~i~vwd~~~~~~~~~~~~h~~-~v~~ 208 (464)
T 3v7d_B 143 MIRVYDSINKKFLLQ-L-------SGHDGGVWALKYAHGG-ILVSGSTDR----TVRVWDIKKGCCTHVFEGHNS-TVRC 208 (464)
T ss_dssp CEEEEETTTTEEEEE-E-------CCCSSCEEEEEECSTT-EEEEEETTS----CEEEEETTTTEEEEEECCCSS-CEEE
T ss_pred cEEEEECCCCcEEEE-E-------eCCCcCEEEEEEcCCC-EEEEEeCCC----CEEEEECCCCcEEEEECCCCC-ccEE
Confidence 367889998875432 2 2334578889999999 444443322 277778888876543331111 1100
Q ss_pred cCccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCceee------------------------cccccCeEEEEEEe
Q 008873 140 HDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLG------------------------PITEGDWMVEQIVG 194 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~~~~------------------------~lT~~~~~~~~~~~ 194 (550)
..+. ..++ .+++....+|. |.+++..+++.. .+..... .+..
T Consensus 209 ---l~~~-----~~~~~~~l~s~s~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~ 275 (464)
T 3v7d_B 209 ---LDIV-----EYKNIKYIVTGSRDNT--LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA---SVRT 275 (464)
T ss_dssp ---EEEE-----ESSSCEEEEEEETTSC--EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS---CEEE
T ss_pred ---EEEe-----cCCCCCEEEEEcCCCc--EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc---eEEE
Confidence 1110 1123 35555545554 444454333211 1111111 1224
Q ss_pred EeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCC
Q 008873 195 VNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQD 273 (550)
Q Consensus 195 ~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~ 273 (550)
++++++.|+..+... .|...++. .+. ....+.. ......+.++|+++.++....+ ..+.+.++.+
T Consensus 276 ~~~~~~~l~~~~~d~-----~i~vwd~~-~~~----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----g~i~vwd~~~ 341 (464)
T 3v7d_B 276 VSGHGNIVVSGSYDN-----TLIVWDVA-QMK----CLYILSGHTDRIYSTIYDHERKRCISASMD----TTIRIWDLEN 341 (464)
T ss_dssp EEEETTEEEEEETTS-----CEEEEETT-TTE----EEEEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEEETTT
T ss_pred EcCCCCEEEEEeCCC-----eEEEEECC-CCc----EEEEecCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCC
Confidence 578888776655432 23444652 221 2233332 2346777899999987654433 3688899988
Q ss_pred CceeEeccCC
Q 008873 274 GSLVLPLYEQ 283 (550)
Q Consensus 274 g~~~~~l~~~ 283 (550)
++....+...
T Consensus 342 ~~~~~~~~~h 351 (464)
T 3v7d_B 342 GELMYTLQGH 351 (464)
T ss_dssp TEEEEEECCC
T ss_pred CcEEEEEeCC
Confidence 8866666543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.12 Score=50.89 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=50.6
Q ss_pred ECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEee-cCceeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEE
Q 008873 95 WMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEE-LDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLH 172 (550)
Q Consensus 95 wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~ 172 (550)
|+||++.++...... .|.+.|+.+++........ ....+.. + .+++++ +++....+| .|.++
T Consensus 178 ~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~h~~~v~~---~-------~~s~~~~~l~s~~~dg--~i~iw 241 (437)
T 3gre_A 178 VNEEKSLLVALTNLS----RVIIFDIRTLERLQIIENSPRHGAVSS---I-------CIDEECCVLILGTTRG--IIDIW 241 (437)
T ss_dssp ECSSCEEEEEEETTS----EEEEEETTTCCEEEEEECCGGGCCEEE---E-------EECTTSCEEEEEETTS--CEEEE
T ss_pred EcCCCCEEEEEeCCC----eEEEEeCCCCeeeEEEccCCCCCceEE---E-------EECCCCCEEEEEcCCC--eEEEE
Confidence 788999887765433 4888899988865444321 1111111 1 234444 555544444 46677
Q ss_pred eCCCcee-eccc-ccCeEEEEEE---eEeecCCEEEEEEcCC
Q 008873 173 DINGTCL-GPIT-EGDWMVEQIV---GVNEASGQVYFTGTLD 209 (550)
Q Consensus 173 ~~~~~~~-~~lT-~~~~~~~~~~---~~s~dg~~l~f~~~~~ 209 (550)
|+..++. ..+. .+...+.... .++++++ +++++..+
T Consensus 242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~d 282 (437)
T 3gre_A 242 DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSK 282 (437)
T ss_dssp ETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTT
T ss_pred EcCCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCC
Confidence 7665543 3333 3343444442 2334553 44455444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.12 Score=51.57 Aligned_cols=137 Identities=9% Similarity=0.046 Sum_probs=77.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEE-------CCCCeEEEEEEecCC---CceEEEEEECCC-Cce---
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNW-------MHGNILTAQVLNRSQ---TKLKVLKFDIKT-GQR--- 125 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w-------spDg~~i~~~~~r~~---~~~~l~~~~~~~-g~~--- 125 (550)
.|+++|++++.+..+.-. + ...-.....++| ++||+.|++.....+ ....++.++.+. |+.
T Consensus 163 ~i~~ID~~~~~v~~l~~~-~----~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~ 237 (496)
T 3kya_A 163 AIQLIDLKNRMLSSPLNI-N----TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDR 237 (496)
T ss_dssp EEEEEETTTTEEEEEECC-T----TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTT
T ss_pred eEEEEECCCCEEEEEEcc-C----ccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeec
Confidence 578999999988766321 1 001123567889 999997666544431 234588887555 333
Q ss_pred ---EEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEEEEeCC-------Ccee------------ec-
Q 008873 126 ---KVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYLHDIN-------GTCL------------GP- 181 (550)
Q Consensus 126 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~~~~~-------~~~~------------~~- 181 (550)
+.+.....+.. ...++ ++.+|+++. +...|++++++ ++.. ++
T Consensus 238 ~~~~~v~~~~~p~g-------------iavdp~~g~LYvtd~-~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l 303 (496)
T 3kya_A 238 SDIQLIAAYKQCNG-------------ATIHPINGELYFNSY-EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQL 303 (496)
T ss_dssp SCEEEEEEESCCCC-------------EEECTTTCCEEEEET-TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEE
T ss_pred ccceeeccCCCceE-------------EEEcCCCCeEEEEEC-CCCEEEEEecccccccccCceeeccccccccccccee
Confidence 23322111100 01234 456776665 23479999986 4433 11
Q ss_pred cccc--CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 182 ITEG--DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 182 lT~~--~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
++.+ .|. .. ..++|+|+.||++-... ..|++++.
T Consensus 304 ~~~~~~~~p-~~-ia~~p~G~~lYvaD~~~----h~I~kid~ 339 (496)
T 3kya_A 304 FTIADPSWE-FQ-IFIHPTGKYAYFGVINN----HYFMRSDY 339 (496)
T ss_dssp EECSSSSCC-EE-EEECTTSSEEEEEETTT----TEEEEEEE
T ss_pred EecCCCCCc-eE-EEEcCCCCEEEEEeCCC----CEEEEEec
Confidence 2222 221 22 35999999889886544 47888776
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.69 Score=43.63 Aligned_cols=195 Identities=11% Similarity=0.082 Sum_probs=95.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeE--EEEEEecC--CCceEEEEEECCCCceEEEEEeecCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL--TAQVLNRS--QTKLKVLKFDIKTGQRKVILVEELDS 135 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~--i~~~~~r~--~~~~~l~~~~~~~g~~~~l~~~~~~~ 135 (550)
-|++||+++.....+..+ ..+.-...+.+.-.|+. ++++++|. .+.-.||.+|.++++.+.+....-+.
T Consensus 51 gL~Vydl~G~~l~~~~~g-------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv 123 (355)
T 3amr_A 51 GLVVYSLDGKMLHSYNTG-------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPI 123 (355)
T ss_dssp EEEEEETTSCEEEEECCS-------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCE
T ss_pred CEEEEcCCCcEEEEccCC-------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCc
Confidence 589999977666665321 11112223344435664 77889998 77778888888888755442100000
Q ss_pred eeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeC-CCc-----eeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 136 WVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDI-NGT-----CLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~-~~~-----~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
-.+....+..+-.. +...+. ++|+++++|.-..|.+.. ..+ ..|.+.-+. ++.... .++....||+.-..
T Consensus 124 ~t~~~~pyGlcly~-~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q~Egcv-vDd~~g~Lyv~eEd 200 (355)
T 3amr_A 124 ATAINEVYGFTLYH-SQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-QTEGMA-ADDEYGRLYIAEED 200 (355)
T ss_dssp ECCCSSCCCEEEEE-CTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-CEEEEE-EETTTTEEEEEETT
T ss_pred CCCCCCeeEEEEEe-cCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-CcceEE-EcCCCCeEEEeccc
Confidence 00000001010000 001222 688888887555555532 222 233443333 344443 77777778766433
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCCC---CceEEEEE--CCCCC-EEEEeecCCCCCCEEEEEEcC
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTNG---KGKHVAVL--DHNMR-NFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~---~~~~~~~~--s~dg~-~l~~~~s~~~~p~~l~~~~~~ 272 (550)
..||+++....+......+.++..+ .....+++ .++++ +|+.++... ..+.+++..
T Consensus 201 -----~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~---~s~~Vydr~ 262 (355)
T 3amr_A 201 -----EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN---SSYAIYDRQ 262 (355)
T ss_dssp -----TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG---TEEEEEESS
T ss_pred -----ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC---CEEEEEECC
Confidence 3589999632332110011111111 12344444 67777 555444332 367777774
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.31 E-value=0.67 Score=42.91 Aligned_cols=180 Identities=11% Similarity=0.026 Sum_probs=93.3
Q ss_pred EEEEEECCCCceEEE-EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC-----------CCceEEEEEECCCCceEE
Q 008873 60 RLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS-----------QTKLKVLKFDIKTGQRKV 127 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~-----------~~~~~l~~~~~~~g~~~~ 127 (550)
.|+++|.+ ++...+ ... .. .........+.++|||++++...... .....|+.++.+ |+.+.
T Consensus 93 ~l~~~d~~-g~~~~~~~~~-~~---~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKD-SE---GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp EEEEEETT-SCEEECCSBC-TT---SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred CEEEEeCC-CCEEEEEecc-CC---CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 57788888 665543 211 00 01112355788999998655433210 112479999987 77665
Q ss_pred EEEeecCceeeccCccccCCCCCccC----CCc-EEEEEccCCccEEEEEeCC-Ccee------ecccccC-eEEEEEEe
Q 008873 128 ILVEELDSWVNLHDCFTPLDKGVTKY----SGG-FIWASEKTGFRHLYLHDIN-GTCL------GPITEGD-WMVEQIVG 194 (550)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~s~~~g~~~l~~~~~~-~~~~------~~lT~~~-~~~~~~~~ 194 (550)
+....... . . + .++ +++ .+|+++.. ...|++++.+ .++. ..+..+. .....+ .
T Consensus 167 ~~~~~~~~--~-~--i-------~~~~~~d~dg~~l~v~~~~-~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i-~ 232 (314)
T 1pjx_A 167 VDTAFQFP--N-G--I-------AVRHMNDGRPYQLIVAETP-TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM-D 232 (314)
T ss_dssp EEEEESSE--E-E--E-------EEEECTTSCEEEEEEEETT-TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE-E
T ss_pred eccCCCCc--c-e--E-------EEecccCCCCCEEEEEECC-CCeEEEEECCCCCccccceEEEECCCCCCCCCCce-E
Confidence 54321110 0 0 0 123 555 66666542 3467777754 2321 1111111 223333 4
Q ss_pred EeecCCEEEEEEcCCCCceeEEEEEEeCCC-CCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 195 VNEASGQVYFTGTLDGPLESHLYCAKLYPD-WNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 195 ~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~-g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
++++| .||+..... ..|++++. + +. ....+... .....+.+++||+.|++.... ...|+++++.
T Consensus 233 ~d~~G-~l~v~~~~~----~~i~~~d~--~~g~----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~l~~~~~~ 298 (314)
T 1pjx_A 233 FDEDN-NLLVANWGS----SHIEVFGP--DGGQ----PKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQ 298 (314)
T ss_dssp EBTTC-CEEEEEETT----TEEEEECT--TCBS----CSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECS
T ss_pred ECCCC-CEEEEEcCC----CEEEEEcC--CCCc----EeEEEeCCCCCceeEEECCCCCEEEEEeCC---CCeEEEEeCC
Confidence 78887 466654333 26777776 3 32 22333322 345667889999876554332 2478888875
Q ss_pred C
Q 008873 273 D 273 (550)
Q Consensus 273 ~ 273 (550)
.
T Consensus 299 ~ 299 (314)
T 1pjx_A 299 R 299 (314)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.39 Score=49.81 Aligned_cols=113 Identities=8% Similarity=0.119 Sum_probs=66.9
Q ss_pred EEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCC-CcEEEEEccCCccEEEE
Q 008873 93 VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYS-GGFIWASEKTGFRHLYL 171 (550)
Q Consensus 93 ~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~g~~~l~~ 171 (550)
++..+.++.|+.. +.. ...|.++++++...+.|....-. .|. ....++ .+.+|.+|.+....|++
T Consensus 397 lAvD~~~~~lY~t-D~~--~~~I~v~~~~G~~~~~l~~~~l~-----~P~------~iavdp~~G~ly~tD~g~~~~I~r 462 (619)
T 3s94_A 397 IAVDWVARNLYWT-DTG--TDRIEVTRLNGTMRKILISEDLE-----EPR------AIVLDPMVGYMYWTDWGEIPKIER 462 (619)
T ss_dssp EEEETTTTEEEEE-ETT--TTEEEEEETTSCSCEEEECTTCC-----SEE------EEEEETTTTEEEEEECSSSCEEEE
T ss_pred eEEecccCcEEEE-eCC--CCcEEEEeCCCCeEEEEEECCCC-----Cee------eEEEEcCCCcEEEecCCCCCEEEE
Confidence 4555445545443 332 23588888887766655532100 000 001233 46888888755578999
Q ss_pred EeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCC
Q 008873 172 HDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWN 226 (550)
Q Consensus 172 ~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~ 226 (550)
.+++|...+.|..+.. ...++ .++++++.||+.-... ..|+++++ +|.
T Consensus 463 ~~~dG~~~~~l~~~~l~~P~Gl-alD~~~~~LY~aD~~~----~~I~~~~~--dG~ 511 (619)
T 3s94_A 463 AALDGSDRVVLVNTSLGWPNGL-ALDYDEGKIYWGDAKT----DKIEVMNT--DGT 511 (619)
T ss_dssp EETTSCSCEEEECSSCSCEEEE-EEETTTTEEEEEETTT----TEEEEEES--SSC
T ss_pred EccCCCccEEEEeCCCCCCeee-EEcccCCEEEEEECCC----CEEEEEec--CCC
Confidence 9999876665554322 12334 3788888999986544 37888898 664
|
| >1tgl_A Triacyl-glycerol acylhydrolase; carboxylic esterase; 1.90A {Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A* 3tgl_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.12 Score=47.23 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 433 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~ 433 (550)
.+++...++.+.++. ...++.+.|||+||.+|..++...
T Consensus 119 ~~~~~~~l~~~~~~~--p~~~i~~~GHSLGgalA~l~a~~l 157 (269)
T 1tgl_A 119 QNELVATVLDQFKQY--PSYKVAVTGHSLGGATALLCALDL 157 (269)
T ss_pred HHHHHHHHHHHHHHC--CCceEEEEeeCHHHHHHHHHHHHH
Confidence 345556666555442 135799999999999998887654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.75 Score=46.68 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=39.5
Q ss_pred eEeecCCEEEEEEcCCCCceeEEEEEEeCCC-----CCCCC--CCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEE
Q 008873 194 GVNEASGQVYFTGTLDGPLESHLYCAKLYPD-----WNHTL--EAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRI 266 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~-----g~~~~--~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l 266 (550)
.+||||+++|.+....+ .+..+++... ++... ....++..+.|-....|++|| + +|+..-. ..++
T Consensus 283 ~~sPDGk~v~V~~~~s~----~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~-aY~t~~l--dsqV 354 (595)
T 1fwx_A 283 NMAPDKKHLCVAGKLSP----TVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-N-AYTSLFL--DSQV 354 (595)
T ss_dssp EECTTSSEEEEECTTSS----BEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-E-EEEEETT--TTEE
T ss_pred EEcCCCCEEEEeCCCCC----eEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-e-EEEEEec--CCcE
Confidence 48999999887754433 4555566210 11000 011233334455666899999 4 4444332 2477
Q ss_pred EEEEcCC
Q 008873 267 LLCSLQD 273 (550)
Q Consensus 267 ~~~~~~~ 273 (550)
.++++++
T Consensus 355 ~kwdi~~ 361 (595)
T 1fwx_A 355 VKWNIED 361 (595)
T ss_dssp EEEEHHH
T ss_pred EEEEhhH
Confidence 7788754
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.095 Score=53.30 Aligned_cols=153 Identities=5% Similarity=-0.038 Sum_probs=72.9
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce-E-EEEEeecCceeeccCccccCCCCCccCCC--cEEEEEc
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR-K-VILVEELDSWVNLHDCFTPLDKGVTKYSG--GFIWASE 162 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~-~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~ 162 (550)
...+..++|+|++ .|+...... .|.+.|+.+++. . .+...... +.. ... .++++ .++....
T Consensus 266 ~~~v~sv~~s~~~-~lasgs~Dg----tV~lWD~~~~~~~~~~~~~H~~~--V~s---v~~-----~~s~~g~~~laS~S 330 (524)
T 2j04_B 266 DSLITTFDFLSPT-TVVCGFKNG----FVAEFDLTDPEVPSFYDQVHDSY--ILS---VST-----AYSDFEDTVVSTVA 330 (524)
T ss_dssp TTCEEEEEESSSS-EEEEEETTS----EEEEEETTBCSSCSEEEECSSSC--EEE---EEE-----ECCTTSCCEEEEEE
T ss_pred CCCEEEEEecCCC-eEEEEeCCC----EEEEEECCCCCCceEEeeccccc--EEE---EEE-----EcCCCCCeEEEEec
Confidence 4567889999986 454443222 377777876642 2 22211111 110 000 12333 3444443
Q ss_pred cCCccEEEEEeCCCcee-eccccc-C-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-C
Q 008873 163 KTGFRHLYLHDINGTCL-GPITEG-D-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-G 238 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~-~~lT~~-~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~ 238 (550)
.+| .|.+.|+.+++. ..++.. . ..+... .|+|+++.++. +..++ ...|| ++. .+. ....+.. .
T Consensus 331 ~D~--tvklWD~~~~~~~~~~~~~~~~~~v~~v-~fsp~~~~l~s-~~~d~--tv~lw--d~~-~~~----~~~~l~gH~ 397 (524)
T 2j04_B 331 VDG--YFYIFNPKDIATTKTTVSRFRGSNLVPV-VYCPQIYSYIY-SDGAS--SLRAV--PSR-AAF----AVHPLVSRE 397 (524)
T ss_dssp TTS--EEEEECGGGHHHHCEEEEECSCCSCCCE-EEETTTTEEEE-ECSSS--EEEEE--ETT-CTT----CCEEEEECS
T ss_pred cCC--eEEEEECCCCCcccccccccccCcccce-EeCCCcCeEEE-eCCCC--cEEEE--ECc-ccc----cceeeecCC
Confidence 444 455666544322 122211 1 012223 49999987543 33332 23444 652 221 2233432 2
Q ss_pred CceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
....+++|||+|+.|+-...+ ..+.+.++
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~D----gtv~lwd~ 426 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSAD----GSLIITNA 426 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETT----TEEECCBS
T ss_pred CceEEEEeCCCCCeEEEEECC----CEEEEEec
Confidence 347788999999876533222 35666554
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.79 E-value=1.5 Score=43.11 Aligned_cols=172 Identities=12% Similarity=0.055 Sum_probs=89.9
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.+||+.+++.... + ......+..+.| ||+.++...... .|.+.++.+++......... ..+.
T Consensus 260 ~i~iwd~~~~~~~~~-~-------~~~~~~v~~~~~--~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~-~~v~- 323 (445)
T 2ovr_B 260 MVKVWDPETETCLHT-L-------QGHTNRVYSLQF--DGIHVVSGSLDT----SIRVWDVETGNCIHTLTGHQ-SLTS- 323 (445)
T ss_dssp CEEEEEGGGTEEEEE-E-------CCCSSCEEEEEE--CSSEEEEEETTS----CEEEEETTTCCEEEEECCCC-SCEE-
T ss_pred EEEEEECCCCcEeEE-e-------cCCCCceEEEEE--CCCEEEEEeCCC----eEEEEECCCCCEEEEEcCCc-ccEE-
Confidence 467889888765432 1 122345666777 888776665433 37888888887643322111 1110
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCce-eecccc---cCeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTC-LGPITE---GDWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~-~~~lT~---~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.+ .++++ +++....+| .|.++++.+++ ...+.. ....+... ..+++.|+.. ..++ ...
T Consensus 324 --~~-------~~~~~-~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~l~s~-~~dg--~v~ 385 (445)
T 2ovr_B 324 --GM-------ELKDN-ILVSGNADS--TVKIWDIKTGQCLQTLQGPNKHQSAVTCL---QFNKNFVITS-SDDG--TVK 385 (445)
T ss_dssp --EE-------EEETT-EEEEEETTS--CEEEEETTTCCEEEEECSTTSCSSCEEEE---EECSSEEEEE-ETTS--EEE
T ss_pred --EE-------EEeCC-EEEEEeCCC--eEEEEECCCCcEEEEEccCCCCCCCEEEE---EECCCEEEEE-eCCC--eEE
Confidence 01 11222 444444444 46667765543 333432 22223333 3355555544 4333 244
Q ss_pred EEEEEeCCCCCCCCCCCeeeC------CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLT------NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt------~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
+| ++. .+. ....+. .......+.|+|++..++....+......++++|..
T Consensus 386 iw--d~~-~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 386 LW--DLK-TGE----FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EE--ETT-TCC----EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred EE--ECC-CCc----eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 44 652 232 223331 112366678999998777666665556788888874
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.015 Score=61.55 Aligned_cols=184 Identities=10% Similarity=0.006 Sum_probs=94.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCC----CceEEEEEeecCc
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKT----GQRKVILVEELDS 135 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~----g~~~~l~~~~~~~ 135 (550)
.|.++++++++...+. ........++|.+++..|+++ +.... .|+++++++ .....+... .
T Consensus 387 ~I~~id~~~~~~~~~~---------~~~~~p~gla~d~~~~~Ly~s-D~~~~--~I~~~~~~g~~~~~~~~~~i~~---~ 451 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS-DLSQR--MICSTQLDRAHGVSSYDTVISR---D 451 (699)
T ss_dssp C-CEECTTSCCEECCS---------CCCTTCCCCEEETTTTEEEEC-CTTTT--SBEEEESCCCCC-CCCCCBCCS---C
T ss_pred ceEEEeCCCCcceeee---------ccCcceEEEccccccCeEEEE-ecCCC--eEEEEecCCCCCCcceEEEEeC---C
Confidence 4667777776554331 111223457898877666554 33222 388888876 221111100 0
Q ss_pred eeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 136 WVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
. ..|......|.. +-+|+++. +...|+++++++...+.|.... .....+ .++|+++.||++.... ..
T Consensus 452 ~------~~P~glavD~~~-g~LY~tD~-~~~~I~v~d~dg~~~~~l~~~~~~~P~gi-avDp~~g~ly~td~~~---~~ 519 (699)
T 1n7d_A 452 I------QAPDGLAVDWIH-SNIYWTDS-VLGTVSVADTKGVKRKTLFREQGSKPRAI-VVDPVHGFMYWTDWGT---PA 519 (699)
T ss_dssp C--------CCCEECCCSS-SBCEECCT-TTSCEEEEBSSSCCEEEECCCSSCCCCCE-ECCSSSSCCEECCCSS---SC
T ss_pred C------CCcceEEEEeeC-CcEEEEec-cCCeEEEEecCCCceEEEEeCCCCCcceE-EEccCCCcEEEcccCC---CC
Confidence 0 001000001222 34455554 3457899998887655544322 112233 3788888898875322 14
Q ss_pred EEEEEEeCCCCCCCCCCCeeeCCC--CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 215 HLYCAKLYPDWNHTLEAPVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~lt~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.|+++++ +|. ..+.+... ..-..++++++++.|+++-+. ...|+++++. |...+.+
T Consensus 520 ~I~~~~~--dG~----~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~---~~~I~~~d~d-G~~~~~~ 577 (699)
T 1n7d_A 520 KIKKGGL--NGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK---LHSISSIDVN-GGNRKTI 577 (699)
T ss_dssp CEEBCCS--SSC----CCCEESCSSCSSCCCEEECTTTCCEEEEETT---TTEEEEECSS-SSCCEEE
T ss_pred eEEEEeC--CCC----CeeEEEeCCCCCccEEEEeccCCEEEEEecC---CCeEEEEccC-CCceEEE
Confidence 6888877 554 22222211 123456889988877666433 3589999884 4433443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.42 Score=45.65 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=57.1
Q ss_pred CceeEEEEECCC---CeEEEEEEecC--CCceEEEEEECCCCc---eEEEEE-eec-CceeeccCccccCCCCCccCCCc
Q 008873 87 EEYLARVNWMHG---NILTAQVLNRS--QTKLKVLKFDIKTGQ---RKVILV-EEL-DSWVNLHDCFTPLDKGVTKYSGG 156 (550)
Q Consensus 87 ~~~~~~~~wspD---g~~i~~~~~r~--~~~~~l~~~~~~~g~---~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (550)
......++++|| +..++...... .....|++++.++++ .+.|.. .+. ..- .+ ......+++|+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~-~h------~~~~l~~~pdG 146 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHG-LH------SGGRIAFGPDG 146 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTC-CC------CCCCEEECTTS
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCC-Cc------CCceEEECCCC
Confidence 345567899999 54443332211 112568999887653 233333 110 000 00 01112346677
Q ss_pred EEEEEccC------------CccEEEEEeCCCc-------------eeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 157 FIWASEKT------------GFRHLYLHDINGT-------------CLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 157 ~~~~s~~~------------g~~~l~~~~~~~~-------------~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
.+|++..+ ....|++++.++. ..+.++.|-.....+ .|++++..||+.-..
T Consensus 147 ~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~-a~d~~~g~l~v~d~g 222 (352)
T 2ism_A 147 MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGL-AWHPKTGELFSSEHG 222 (352)
T ss_dssp CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCC-EECTTTCCEEEEEEC
T ss_pred CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccE-EEECCCCCEEEEEcC
Confidence 67776532 1247999998762 222333332222333 388855567777543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.62 Score=42.27 Aligned_cols=158 Identities=12% Similarity=-0.035 Sum_probs=84.1
Q ss_pred EEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEE
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLY 170 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~ 170 (550)
..+.|+|||+ ++..... ...+.|..+|+++|+...-.......+.. .+ ..+++ -+|++.. .-..++
T Consensus 24 ~Gl~~~~dg~-Lyvstg~-~~~s~v~~iD~~tg~v~~~i~l~~~~fge---Gi-------~~~g~-~lyv~t~-~~~~v~ 89 (266)
T 2iwa_A 24 QGLVYAENDT-LFESTGL-YGRSSVRQVALQTGKVENIHKMDDSYFGE---GL-------TLLNE-KLYQVVW-LKNIGF 89 (266)
T ss_dssp EEEEECSTTE-EEEEECS-TTTCEEEEEETTTCCEEEEEECCTTCCEE---EE-------EEETT-EEEEEET-TCSEEE
T ss_pred ccEEEeCCCe-EEEECCC-CCCCEEEEEECCCCCEEEEEecCCCcceE---EE-------EEeCC-EEEEEEe-cCCEEE
Confidence 4568999974 3333222 23456999999999975533321110100 01 12333 4444433 335789
Q ss_pred EEeCCCce-eeccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC------ceE
Q 008873 171 LHDINGTC-LGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK------GKH 242 (550)
Q Consensus 171 ~~~~~~~~-~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~------~~~ 242 (550)
++|.++.+ ...+.-+ .. . ...++||+++|.+ + .+ ..|+.+|. .... ....+.-+. ...
T Consensus 90 viD~~t~~v~~~i~~g~~~---g-~glt~Dg~~l~vs-~-gs---~~l~viD~--~t~~---v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTHQMKD---G-WGLATDGKILYGS-D-GT---SILYEIDP--HTFK---LIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEETTTTEEEEEEECCSSS---C-CEEEECSSSEEEE-C-SS---SEEEEECT--TTCC---EEEEEECEETTEECCCEE
T ss_pred EEECCCCcEEEEEECCCCC---e-EEEEECCCEEEEE-C-CC---CeEEEEEC--CCCc---EEEEEEECCCCcccccce
Confidence 99987654 3345433 11 1 2367899988864 4 22 47888887 2221 233333221 122
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
...+. ||+ +..... ....+.++|.++++.+..+.
T Consensus 156 ele~~-dg~-lyvn~~---~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 156 ELEYI-NGE-VWANIW---QTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp EEEEE-TTE-EEEEET---TSSEEEEEETTTCCEEEEEE
T ss_pred eEEEE-CCE-EEEecC---CCCeEEEEECCCCcEEEEEE
Confidence 33455 663 332221 12499999999998766653
|
| >1lgy_A Lipase, triacylglycerol lipase; hydrolase (carboxylic ester); 2.20A {Rhizopus niveus} SCOP: c.69.1.17 PDB: 1tic_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.23 Score=45.34 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC----C----CeeEEEEEcCCcC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF----P----DVFQCAVSGAPVT 447 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~----~~~~~~v~~~~~~ 447 (550)
.+++...++.+.++. ...+|.+.|||+||.+|..++... . ..+.+..-.+|-.
T Consensus 120 ~~~~~~~l~~~~~~~--~~~~i~vtGHSLGGalA~l~a~~~~~~~~~~~~~~v~~~tFg~Prv 180 (269)
T 1lgy_A 120 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRV 180 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHHHHHHCTTCSTTTEEEEEESCCCC
T ss_pred HHHHHHHHHHHHHHC--CCCeEEEeccChHHHHHHHHHHHHHhhccccCCCCeEEEEecCCCc
Confidence 456667777766553 235899999999999998887654 2 2345555555543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=95.48 E-value=1.5 Score=40.11 Aligned_cols=186 Identities=8% Similarity=-0.013 Sum_probs=91.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.++.+|.++...+++... ....+..+.++|||+.++..... ...|+.++.++.....+.-.... ..
T Consensus 57 ~V~~~d~~G~~~W~~~~~--------~~~~~~~~~~~~dG~~lv~~~~~---~~~v~~vd~~Gk~l~~~~~~~~~---~~ 122 (276)
T 3no2_A 57 GAKMITRDGRELWNIAAP--------AGCEMQTARILPDGNALVAWCGH---PSTILEVNMKGEVLSKTEFETGI---ER 122 (276)
T ss_dssp EEEEECTTSCEEEEEECC--------TTCEEEEEEECTTSCEEEEEEST---TEEEEEECTTSCEEEEEEECCSC---SS
T ss_pred CEEEECCCCCEEEEEcCC--------CCccccccEECCCCCEEEEecCC---CCEEEEEeCCCCEEEEEeccCCC---Cc
Confidence 477888854444555431 12346678899999987665431 23588888755444443221110 00
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
+ ..+... ....+++ +++... +...|+.+|++|.....+..+..... . ...++|+.++ ..... ..|+.
T Consensus 123 -~-~~~~~~-v~~~~~G~~lv~~~--~~~~v~~~d~~G~~~w~~~~~~~~~~-~-~~~~~g~~~v-~~~~~----~~v~~ 190 (276)
T 3no2_A 123 -P-HAQFRQ-INKNKKGNYLVPLF--ATSEVREIAPNGQLLNSVKLSGTPFS-S-AFLDNGDCLV-ACGDA----HCFVQ 190 (276)
T ss_dssp -G-GGSCSC-CEECTTSCEEEEET--TTTEEEEECTTSCEEEEEECSSCCCE-E-EECTTSCEEE-ECBTT----SEEEE
T ss_pred -c-cccccC-ceECCCCCEEEEec--CCCEEEEECCCCCEEEEEECCCCccc-e-eEcCCCCEEE-EeCCC----CeEEE
Confidence 0 000000 0123333 554432 23478999988654444443322111 2 2456776444 33332 24777
Q ss_pred EEeCCCCCCCCCCCeeeCCC-------CceEEEEECCCCCEEEEeecCCC------CCCEEEEEEcCCCcee
Q 008873 219 AKLYPDWNHTLEAPVKLTNG-------KGKHVAVLDHNMRNFVDFHDSLD------SPPRILLCSLQDGSLV 277 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~~-------~~~~~~~~s~dg~~l~~~~s~~~------~p~~l~~~~~~~g~~~ 277 (550)
++.. +|. ..-++... .....+...++|..++..+.+-. ..++++.++. +|+.+
T Consensus 191 ~d~~-tG~----~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~~ 256 (276)
T 3no2_A 191 LNLE-SNR----IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKVV 256 (276)
T ss_dssp ECTT-TCC----EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBEE
T ss_pred EeCc-CCc----EEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC-CCCEE
Confidence 7762 243 11222110 11345567789887665543321 3456777664 67643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.59 Score=44.36 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=82.4
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec--cCccccCCCCCccCCCcEEEEEccC--
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL--HDCFTPLDKGVTKYSGGFIWASEKT-- 164 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~-- 164 (550)
....++.+|||++++...........|+.++ +|+.. ..+ .|... .....+. ....++++-+|+.|..
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~---~~p--~~~~~~~~~~~~p~--gv~~d~~g~L~v~D~g~~ 88 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGLI---PFP--PQSGNAIITFDTVL--GIKSDGNGIVWMLDNGNQ 88 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEEE---ESC--CCCSSCCCCCSCEE--EEEECSSSEEEEEECHHH
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCee---cCC--CcccCcccceeEee--EEEEcCCCcEEEEcCCCC
Confidence 4466889999986554322211214588888 55432 111 11100 0000110 1133555656665532
Q ss_pred --CccEEEEEeCCCce-eeccccc------CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC-------
Q 008873 165 --GFRHLYLHDINGTC-LGPITEG------DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT------- 228 (550)
Q Consensus 165 --g~~~l~~~~~~~~~-~~~lT~~------~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~------- 228 (550)
+-..|+++|+++++ .+.+..+ .-...++. ++++++.+|++..... ....|+++++. .+...
T Consensus 89 ~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~-vd~~~g~~yvtd~~~~-~~~~i~v~d~~-~g~~~r~~~~~~ 165 (343)
T 2qe8_A 89 SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLA-VDLIHNFVYISDPAPD-DKAALIRVDLQ-TGLAARVLQGYP 165 (343)
T ss_dssp HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEE-EETTTTEEEEEECCSG-GGCEEEEEETT-TCCEEEECTTCT
T ss_pred cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEE-EecCCCEEEEEcCccC-CCCeEEEEECC-CCCEEEEecCCC
Confidence 13679999988766 3433321 01112333 7777778888754210 12467777762 22100
Q ss_pred CCCC---------eeeC----------CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 229 LEAP---------VKLT----------NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 229 ~~~~---------~~lt----------~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
...+ +.+. ...+...+++||||+.|++..... ..+|.++.
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~---~~l~~~~~ 224 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS---TSMYRIKS 224 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC---SEEEEEEH
T ss_pred cccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC---CeEEEEEH
Confidence 0000 0000 001345678999998876654332 37888875
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.36 Score=46.22 Aligned_cols=123 Identities=10% Similarity=-0.041 Sum_probs=60.6
Q ss_pred ceeEEEEECCC----CeEEEEEEe-cCC--CceEEEEEECCCC--c---eEEEEE-eecCceeeccCccccCCCCCccCC
Q 008873 88 EYLARVNWMHG----NILTAQVLN-RSQ--TKLKVLKFDIKTG--Q---RKVILV-EELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 88 ~~~~~~~wspD----g~~i~~~~~-r~~--~~~~l~~~~~~~g--~---~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
.....++++|| |.+++.... ... ....|++++.+++ . .+.|.. ...... + ......+++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~--h------~~~~l~~~p 144 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYI--H------NGGRIRFGP 144 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSS--C------CCCCEEECT
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCC--c------CCceEEECC
Confidence 44567899998 444333322 111 1257899988765 2 233332 111100 0 011113466
Q ss_pred CcEEEEEccC------------CccEEEEEeCCCc--------eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 155 GGFIWASEKT------------GFRHLYLHDINGT--------CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 155 ~~~~~~s~~~------------g~~~l~~~~~~~~--------~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
|+.+|++..+ ....|++++.+|. ..+.++.|-.....+ .|+++...||+.-+..+. ..
T Consensus 145 DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gl-a~d~~~g~l~v~d~g~~~-~d 222 (354)
T 3a9g_A 145 DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGI-DWHRASGVMVATEHGPVG-HD 222 (354)
T ss_dssp TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEE-EECTTTCCEEEEECCSSS-CC
T ss_pred CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceE-EEeCCCCCEEEEecCCCC-Cc
Confidence 7766666421 1247999998775 223334332222234 388855568777554322 13
Q ss_pred EEEEEE
Q 008873 215 HLYCAK 220 (550)
Q Consensus 215 ~l~~v~ 220 (550)
.|..+.
T Consensus 223 ei~~i~ 228 (354)
T 3a9g_A 223 EVNIIL 228 (354)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 444443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.22 E-value=2.2 Score=42.23 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=25.0
Q ss_pred cEEEEEeCCCc-----------eeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 167 RHLYLHDINGT-----------CLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 167 ~~l~~~~~~~~-----------~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
..|++++.+|+ ..+..+.|-.+...+. |+++| .||++-+.
T Consensus 197 G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla-~dp~G-~L~~~d~g 247 (454)
T 1cru_A 197 GKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLA-FTPNG-KLLQSEQG 247 (454)
T ss_dssp SEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEE-ECTTS-CEEEEEEC
T ss_pred eeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEE-ECCCC-CEEEEecC
Confidence 57999998876 3445555544555554 78765 46666543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=95.12 E-value=1.9 Score=39.30 Aligned_cols=173 Identities=10% Similarity=0.022 Sum_probs=88.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.++|.+ ++...+.+. ........+.+++||++++.. .. ...|+.++.+ |+.+.+........
T Consensus 42 ~v~~~~~~-~~~~~~~~~-------~~~~~~~~i~~~~~g~l~v~~--~~--~~~v~~~d~~-g~~~~~~~~~~~~~--- 105 (300)
T 2qc5_A 42 KISSLDQS-GRIKEFEVP-------TPDAKVMCLIVSSLGDIWFTE--NG--ANKIGKLSKK-GGFTEYPLPQPDSG--- 105 (300)
T ss_dssp EEEEECTT-SCEEEEECS-------STTCCEEEEEECTTSCEEEEE--TT--TTEEEEECTT-SCEEEEECSSTTCC---
T ss_pred eEEEECCC-CceEEEECC-------CCCCcceeEEECCCCCEEEEe--cC--CCeEEEECCC-CCeEEecCCCCCCC---
Confidence 45667777 655554432 112345667889999855432 21 2258999988 66554322111100
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecc--cccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~l--T~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
+. ....++++-+|+++. +...|++++.+ ++.+.+ .........+. ++++|+ ||+..... ..|+
T Consensus 106 -----~~--~i~~~~~g~l~v~~~-~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~-~d~~g~-l~v~~~~~----~~i~ 170 (300)
T 2qc5_A 106 -----PY--GITEGLNGDIWFTQL-NGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT-LGSDNA-LWFTENQN----NSIG 170 (300)
T ss_dssp -----EE--EEEECSTTCEEEEET-TTTEEEEECTT-SCEEEEECSSTTCCEEEEE-ECTTSS-EEEEETTT----TEEE
T ss_pred -----Cc--cceECCCCCEEEEcc-CCCeEEEECCC-CCEEEccCCCCCCCceeEE-ECCCCC-EEEEecCC----CeEE
Confidence 00 001234444555543 22468899887 444332 21122233343 778887 77765433 3577
Q ss_pred EEEeCCCCCCCCCCCeeeCC---CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 218 CAKLYPDWNHTLEAPVKLTN---GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~---~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+++. ++. ...+.. ......+.++++|..++.. .. ...+++++. +++
T Consensus 171 ~~~~--~g~-----~~~~~~~~~~~~~~~i~~d~~g~l~v~~-~~---~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 171 RITN--TGK-----LEEYPLPTNAAAPVGITSGNDGALWFVE-IM---GNKIGRITT-TGE 219 (300)
T ss_dssp EECT--TCC-----EEEEECSSTTCCEEEEEECTTSSEEEEE-TT---TTEEEEECT-TCC
T ss_pred EECC--CCc-----EEEeeCCCCCCCcceEEECCCCCEEEEc-cC---CCEEEEEcC-CCc
Confidence 7776 442 222221 1234556788888643322 21 236888886 555
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.73 Score=44.01 Aligned_cols=116 Identities=8% Similarity=-0.047 Sum_probs=58.0
Q ss_pred CceeEEEEECCC----CeEEEEEEecCC---CceEEEEEECCCC--c---eEEEEEeecCceeeccCccccCCCCCccCC
Q 008873 87 EEYLARVNWMHG----NILTAQVLNRSQ---TKLKVLKFDIKTG--Q---RKVILVEELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 87 ~~~~~~~~wspD----g~~i~~~~~r~~---~~~~l~~~~~~~g--~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
+.....++++|| +.+.+....+.. ....|++++.+.+ + .+.|.......-... -......+++
T Consensus 65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~-----h~~~~l~~~p 139 (353)
T 2g8s_A 65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGN-----HFGGRLVFDG 139 (353)
T ss_dssp TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSS-----CCCCCEEECS
T ss_pred CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCc-----ccCccEEECC
Confidence 344567899996 544333333221 1457888877654 2 223322111000000 0011124567
Q ss_pred CcEEEEEccCC------------ccEEEEEeCCCc-------------eeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 155 GGFIWASEKTG------------FRHLYLHDINGT-------------CLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 155 ~~~~~~s~~~g------------~~~l~~~~~~~~-------------~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
|+.+|++..++ ...|++++.+++ ..+..+.|-.....+. |+++...||++-+.
T Consensus 140 dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~-~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 140 KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMA-MNPWSNALWLNEHG 217 (353)
T ss_dssp SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEE-EETTTTEEEEEEEC
T ss_pred CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceE-EECCCCCEEEEecC
Confidence 77777764321 247999998875 2233344433444444 88855678877553
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=2.8 Score=41.00 Aligned_cols=204 Identities=12% Similarity=0.052 Sum_probs=100.5
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
|.+||+.+++.... + ......+..++| |++.++...... .|.+.++.+++.......... .+.
T Consensus 155 i~iwd~~~~~~~~~-~-------~~h~~~v~~l~~--~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~h~~-~v~-- 217 (435)
T 1p22_A 155 IKIWDKNTLECKRI-L-------TGHTGSVLCLQY--DERVIITGSSDS----TVRVWDVNTGEMLNTLIHHCE-AVL-- 217 (435)
T ss_dssp EEEEESSSCCEEEE-E-------CCCSSCEEEEEC--CSSEEEEEETTS----CEEEEESSSCCEEEEECCCCS-CEE--
T ss_pred EEEEeCCCCeEEEE-E-------cCCCCcEEEEEE--CCCEEEEEcCCC----eEEEEECCCCcEEEEEcCCCC-cEE--
Confidence 67889998876543 1 122345677777 788777665433 377788888876433221111 110
Q ss_pred CccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCcee----ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 141 DCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL----GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~----~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.+ .++++ +++....+| .|.+++..+++. ..+......+.. .+.+++.|+..+.. + .|
T Consensus 218 ----~l----~~~~~-~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~l~s~~~d-g----~i 278 (435)
T 1p22_A 218 ----HL----RFNNG-MMVTCSKDR--SIAVWDMASPTDITLRRVLVGHRAAVNV---VDFDDKYIVSASGD-R----TI 278 (435)
T ss_dssp ----EE----ECCTT-EEEEEETTS--CEEEEECSSSSCCEEEEEECCCSSCEEE---EEEETTEEEEEETT-S----EE
T ss_pred ----EE----EEcCC-EEEEeeCCC--cEEEEeCCCCCCceeeeEecCCCCcEEE---EEeCCCEEEEEeCC-C----eE
Confidence 00 12333 444444445 355566554432 223323333333 33377766655443 2 34
Q ss_pred EEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCC
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQL 295 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~ 295 (550)
...++. .+. ....+... .....+.+ +++.++....+ ..+.+.|+.+++.+..+...... +....+
T Consensus 279 ~vwd~~-~~~----~~~~~~~~~~~v~~~~~--~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~h~~~---v~~~~~ 344 (435)
T 1p22_A 279 KVWNTS-TCE----FVRTLNGHKRGIACLQY--RDRLVVSGSSD----NTIRLWDIECGACLRVLEGHEEL---VRCIRF 344 (435)
T ss_dssp EEEETT-TCC----EEEEEECCSSCEEEEEE--ETTEEEEEETT----SCEEEEETTTCCEEEEECCCSSC---EEEEEC
T ss_pred EEEECC-cCc----EEEEEcCCCCcEEEEEe--CCCEEEEEeCC----CeEEEEECCCCCEEEEEeCCcCc---EEEEEe
Confidence 444652 221 22233322 22444445 45655444332 36888999888766666543222 222233
Q ss_pred CCCeEEEEEcCCCcEEEEEEE
Q 008873 296 EPPDIVQIQANDGTVLYGALY 316 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~ 316 (550)
..+.+..-+.||. |..|-.
T Consensus 345 -~~~~l~sg~~dg~-i~vwd~ 363 (435)
T 1p22_A 345 -DNKRIVSGAYDGK-IKVWDL 363 (435)
T ss_dssp -CSSEEEEEETTSC-EEEEEH
T ss_pred -cCCEEEEEeCCCc-EEEEEC
Confidence 3344444444553 555544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.07 E-value=1.7 Score=40.30 Aligned_cols=92 Identities=10% Similarity=0.113 Sum_probs=46.0
Q ss_pred cEEEEEccCCccEEEEEeCCC-cee---ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCC
Q 008873 156 GFIWASEKTGFRHLYLHDING-TCL---GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEA 231 (550)
Q Consensus 156 ~~~~~s~~~g~~~l~~~~~~~-~~~---~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~ 231 (550)
+.+|+++. +...|++++.++ ++. +.+..... ...+ .++++|+ ||+..... ..|.+++. +|... .
T Consensus 179 ~~lyv~d~-~~~~I~~~~~~~~g~~~~~~~~~~~~~-P~gi-~vd~dG~-l~va~~~~----~~V~~~~~--~G~~~--~ 246 (306)
T 2p4o_A 179 NFLYVSNT-EKMLLLRIPVDSTDKPGEPEIFVEQTN-IDDF-AFDVEGN-LYGATHIY----NSVVRIAP--DRSTT--I 246 (306)
T ss_dssp TEEEEEET-TTTEEEEEEBCTTSCBCCCEEEEESCC-CSSE-EEBTTCC-EEEECBTT----CCEEEECT--TCCEE--E
T ss_pred CEEEEEeC-CCCEEEEEEeCCCCCCCccEEEeccCC-CCCe-EECCCCC-EEEEeCCC----CeEEEECC--CCCEE--E
Confidence 37777765 345789998764 321 11111110 1122 3777874 65554333 24667765 44210 0
Q ss_pred CeeeCCC-CceEEEEEC---CCCCEEEEeecC
Q 008873 232 PVKLTNG-KGKHVAVLD---HNMRNFVDFHDS 259 (550)
Q Consensus 232 ~~~lt~~-~~~~~~~~s---~dg~~l~~~~s~ 259 (550)
...+... ..-..+.|+ +|++.|+++.+.
T Consensus 247 ~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 247 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 1112211 335667787 788877666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 550 | ||||
| d1xfda1 | 465 | b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik | 7e-38 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 2e-31 | |
| d2bgra1 | 470 | b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, | 2e-29 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 5e-26 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 8e-19 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 5e-18 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 6e-18 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 3e-17 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 1e-16 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 1e-16 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 1e-15 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 6e-15 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 8e-15 | |
| d2jbwa1 | 360 | c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine h | 6e-14 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 3e-10 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 4e-10 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 2e-09 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 7e-09 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 3e-08 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 5e-07 | |
| d1jjfa_ | 255 | c.69.1.2 (A:) Feruloyl esterase domain of the cell | 2e-06 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 5e-06 | |
| d1dina_ | 233 | c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas | 9e-06 | |
| d1qlwa_ | 318 | c.69.1.15 (A:) A novel bacterial esterase {Alcalig | 6e-05 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 3e-04 | |
| d3b5ea1 | 209 | c.69.1.14 (A:7-215) Uncharacterized protein Mll837 | 5e-04 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 0.001 |
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (360), Expect = 7e-38
Identities = 59/287 (20%), Positives = 105/287 (36%), Gaps = 11/287 (3%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
+ +WWS D +A+ ++ S +P + + + + YP AG+ N +
Sbjct: 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY--TGSIYPTVKPYHYPKAGSENPSIS 229
Query: 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDI 120
L V+ G + D E Y+ V W + LNR+Q + D
Sbjct: 230 LHVIGLNGPTHDLEMMPPD--DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287
Query: 121 KTGQRKVILVEELDSWVNLHDCFTPLDK-GVTKYSGGFIWASEKTGFRHLYLH----DIN 175
TG +E ++W++ + K G + I + F H+ + + +
Sbjct: 288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347
Query: 176 GTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL 235
+ IT GDW V +I+ +E ++YF T D P LY A ++N + L
Sbjct: 348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC-DL 406
Query: 236 TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282
A H+M F+ + P + + D + L
Sbjct: 407 VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDKKKMFDLET 452
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (301), Expect = 2e-31
Identities = 68/252 (26%), Positives = 114/252 (45%), Gaps = 14/252 (5%)
Query: 307 DGTVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGI 363
D L + KP ++ Y L+ V G P Q V + + V + S G
Sbjct: 11 DDYNLPMQILKPATFTDTT----HYPLLLVVDGTPGSQSVAEKF--EVSWETVMVSSHGA 64
Query: 364 LVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG 423
+V K D RG+ +G K ++ G ++ +DQ+ ++K+ + ++G YGG
Sbjct: 65 VVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGG 124
Query: 424 YLSAITLARFPDV----FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHH 479
YLS L + F C + +P+T + Y + ++E+Y+GL D YE + V H
Sbjct: 125 YLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEMTKVAHR 184
Query: 480 VH-KMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYM 538
V + + L++H DE +HF+HTA LI L+ + Y + I+PDE H + ++
Sbjct: 185 VSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHL 244
Query: 539 EERIWEFIERTL 550
I F
Sbjct: 245 YRSIINFFVECF 256
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 119 bits (297), Expect = 2e-29
Identities = 52/294 (17%), Positives = 92/294 (31%), Gaps = 17/294 (5%)
Query: 1 MDRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVR 60
+ WWS + F+A+ Q + +E+P S+ YP AGA N V+
Sbjct: 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK 229
Query: 61 LGVVSAAGGPVSWMDL---QCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKV 115
VV+ + YL V W ++ Q L R Q + + +
Sbjct: 230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDI 289
Query: 116 LKFDIKTGQRKVILV-----EELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLY 170
+D +G+ ++ WV P + + S + G+RH+
Sbjct: 290 CDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH--FTLDGNSFYKIISNEEGYRHIC 347
Query: 171 LHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG--PLESHLYCAKLYPDWNHT 228
I+ IT+G W V I + +Y+ P +LY +L T
Sbjct: 348 YFQIDKKDCTFITKGTWEVIGIEALTS--DYLYYISNEYKGMPGGRNLYKIQLSDYTKVT 405
Query: 229 LEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282
+ + + + P L S + + L +
Sbjct: 406 CLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH-SSVNDKGLRVLED 458
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 104 bits (260), Expect = 5e-26
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 12/260 (4%)
Query: 297 PPDIVQIQANDGTVLYGALYKP---DESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDM 353
P + + T + + P D+S+ Y L+ VY GPC Q + ++
Sbjct: 2 PSKKLDFIILNETKFWYQMILPPHFDKSK----KYPLLLDVYAGPCSQKADTVF--RLNW 55
Query: 354 RAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGH 413
++ I+V D RG+ +G K +I G + EDQ+ A K G
Sbjct: 56 ATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKR 115
Query: 414 IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEY 473
I ++GWSYGGY++++ L VF+C ++ APV+ W+ YD+ YTE+YMGLP+ + Y
Sbjct: 116 IAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHY 175
Query: 474 ---SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530
+ + + + + LL+HG D+NVHF+ +A++ ALV ++ + + DE H
Sbjct: 176 RNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIA 235
Query: 531 RHRDRIYMEERIWEFIERTL 550
++ + FI++
Sbjct: 236 SSTAHQHIYTHMSHFIKQCF 255
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 84.3 bits (207), Expect = 8e-19
Identities = 28/267 (10%), Positives = 48/267 (17%), Gaps = 45/267 (16%)
Query: 282 EQPLTVPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPP-PYKTLISVYGGPCV 340
++ + D P+ P Y L + G +
Sbjct: 5 DKGSVFYHFSATSFDSVD-------GTRHYRVWTAVPNT--TAPASGYPILYMLDGNAVM 55
Query: 341 QLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGA 400
+ D Q ++ + + L A D +G
Sbjct: 56 DRLDDEL------LKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGR 109
Query: 401 EWLIKQGLAKV--------------------GHIGLYGWSYGGYLSAITLARFPDVFQCA 440
G GL+G SYGG + F+
Sbjct: 110 FSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSY-FRSY 168
Query: 441 VSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHF 500
S +P + H +
Sbjct: 169 YSASPSLGRGYDALLSRVTAVEPLQFCT--------KHLAIMEGSATQGDNRETHAVGVL 220
Query: 501 RHTARLINALVAARKPYEILIFPDERH 527
+ L FP+ H
Sbjct: 221 SKIHTTLTILKDKGVNAVFWDFPNLGH 247
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 82.8 bits (203), Expect = 5e-18
Identities = 37/299 (12%), Positives = 69/299 (23%), Gaps = 54/299 (18%)
Query: 288 PRIKRLQLEPPDI----VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV 343
P +R++ + V G + G L P ++ G +
Sbjct: 41 PVFERMESHLKTVEAYDVTFSGYRGQRIKGWLLVPKL---EEEKLPCVVQYIGYNGGR-- 95
Query: 344 CDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN---------------- 387
+ S G + + +D RG LK +
Sbjct: 96 ------GFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGIL 149
Query: 388 -----CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 442
R D + E I + G S GG ++ A
Sbjct: 150 DPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCD 209
Query: 443 GAPVTSWDGYDTFYTE-------KYMGLPSEDPVGY----EYSSVMHHVHKMKGKLLLVH 491
+ + ++ + Y ++ + K L
Sbjct: 210 VPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSV 269
Query: 492 GMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550
G++D N P EI I+P H +F+++
Sbjct: 270 GLMDNICPPSTVFAAYNYY---AGPKEIRIYPYNNHEGGGSFQA----VEQVKFLKKLF 321
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 81.5 bits (199), Expect = 6e-18
Identities = 58/268 (21%), Positives = 102/268 (38%), Gaps = 14/268 (5%)
Query: 287 VPRIKRLQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDS 346
+P R + +V +++ DG+ + + + P P T++ V+GGP +
Sbjct: 1 LPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGR---APTPGPTVVLVHGGPFAE----- 52
Query: 347 WINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406
++ D A L + G V + RG+ E +K E + A +
Sbjct: 53 DSDSWDTFAASLAAAGFHVVMPNYRGSTGY--GEEWRLKIIGDPCGGELEDVSAAARWAR 110
Query: 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYM----G 462
+ + G+SYGGY++ L P +F+ V+GA V W+ +
Sbjct: 111 ESGLASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQ 170
Query: 463 LPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIF 522
L S ++HV ++K L L+H D + RL+ L+A K +E I
Sbjct: 171 LTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHII 230
Query: 523 PDERHMPRRHRDRIYMEERIWEFIERTL 550
PD H D + + F+
Sbjct: 231 PDAGHAINTMEDAVKILLPAVFFLATQR 258
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 80.6 bits (197), Expect = 3e-17
Identities = 35/294 (11%), Positives = 77/294 (26%), Gaps = 50/294 (17%)
Query: 288 PRIKRLQLEPPDI----VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLV 343
P ++ + + + ++ + G P P+ ++ +G
Sbjct: 42 PDLQPVDYPADGVKVYRLTYKSFGNARITGWYAVP----DKEGPHPAIVKYHGYN----- 92
Query: 344 CDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRID----------- 392
+ + G + + RG R + H G +
Sbjct: 93 --ASYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYY 150
Query: 393 ---AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 449
D + E + IG+ G S GG L+ A ++++
Sbjct: 151 RGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNF 210
Query: 450 DGY-------------DTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDE 496
+ F + Y +M+ ++K +L+ G+ID+
Sbjct: 211 ERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDK 270
Query: 497 NVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550
N L E+ ++ H + F ++ L
Sbjct: 271 VTPPSTVFAAYNHL---ETKKELKVYRYFGHEYIPA-----FQTEKLAFFKQIL 316
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 79.4 bits (194), Expect = 1e-16
Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 10/164 (6%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI---NTVDMRAQY 357
V + DG LY + P + P + Y + + +
Sbjct: 31 VMVPMRDGVKLYTVIVIPKNA--RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDV 88
Query: 358 LRSKGILVWKLDNRGTARRGLKFE-----ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG 412
G + D RG + + + D +WL+ G
Sbjct: 89 FVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNG 148
Query: 413 HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456
+G+ G SY G+ + L + A +P+ D ++
Sbjct: 149 RVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDDWF 192
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 78.6 bits (193), Expect = 1e-16
Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 9/124 (7%)
Query: 413 HIGLYGWSYGGYLSAITLARFPDVFQCAVSG-APVTSWDGYDTFYTE------KYMGLPS 465
+ + G + GGY++A + DVF A + +YT + P+
Sbjct: 12 SVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPT 71
Query: 466 EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEI--LIFP 523
+ + + + + + K+ + G D V +L L + +
Sbjct: 72 ANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTT 131
Query: 524 DERH 527
H
Sbjct: 132 GAVH 135
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 76.7 bits (187), Expect = 1e-15
Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 13/165 (7%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISV----YGGPCVQLVCDSWINTVDMRAQ 356
V I DG L+ + P G +++ G +L + +
Sbjct: 27 VMIPMRDGVKLHTVIVLPK----GAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDD 82
Query: 357 YLRSKGILVWKLDNRGTARRGLKFE-----ASIKHNCGRIDAEDQLTGAEWLIKQGLAKV 411
G + D RG + + A D +WL+K
Sbjct: 83 VFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN 142
Query: 412 GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456
G +G+ G SY G+ + L + AV +P+ D ++
Sbjct: 143 GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDWF 187
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 73.3 bits (178), Expect = 6e-15
Identities = 45/270 (16%), Positives = 83/270 (30%), Gaps = 25/270 (9%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRS 360
+ + DGT + + + + + YGG + + + R ++R
Sbjct: 10 IFYPSKDGTKIPMFIVHKKGIKLDGS-HPAFLYGYGGFNISITPNYS----VSRLIFVRH 64
Query: 361 KGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWS 420
G ++ + RG G + + +D AE+LIK+G + + G S
Sbjct: 65 MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGS 124
Query: 421 YGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDP------------ 468
GG L A + PD+F C ++ V + +
Sbjct: 125 NGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKY 184
Query: 469 VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR-------KPYEILI 521
+ +LL+ D+ V H+ + I L P I +
Sbjct: 185 SPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHV 244
Query: 522 FPDERHMPRRHRD-RIYMEERIWEFIERTL 550
H + I ++ FI R L
Sbjct: 245 DTKAGHGAGKPTAKVIEEVSDMFAFIARCL 274
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 74.2 bits (181), Expect = 8e-15
Identities = 28/244 (11%), Positives = 57/244 (23%), Gaps = 65/244 (26%)
Query: 356 QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKV---- 411
Y ++G + GT + +WL + A
Sbjct: 130 DYFLTRGFASIYVAGVGTRSSDGFQTSG-----DYQQIYSMTAVIDWLNGRARAYTSRKK 184
Query: 412 ----------GHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW------------ 449
G + + G SY G ++ + + ++ A ++SW
Sbjct: 185 THEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRS 244
Query: 450 ---------------------------------DGYDTFYTEKYMGLPSEDPVGYEYSSV 476
+ T + + +
Sbjct: 245 PGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNY 304
Query: 477 MHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536
+ + K+K +L+VHG+ D NV AL + +
Sbjct: 305 LINTDKVKADVLIVHGLQDWNVTPEQAYNFWKAL-PEGHAKHAFLHRGAHIYMNSWQSID 363
Query: 537 YMEE 540
+ E
Sbjct: 364 FSET 367
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 71.1 bits (173), Expect = 6e-14
Identities = 43/266 (16%), Positives = 80/266 (30%), Gaps = 34/266 (12%)
Query: 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR 354
L PP DG + + P+ GP P+ +I + G +S
Sbjct: 102 LSPPAERHELVVDGIPMPVYVRIPE----GPGPHPAVIMLGGL-------ESTKEESFQM 150
Query: 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEW-LIKQGLAKVGH 413
+ +G+ D ++ D E + L K +
Sbjct: 151 ENLVLDRGMATATFDGP-------GQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDA 203
Query: 414 IGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF---------YTEKYMGLP 464
IG+ G S GG + + A P +S + D +D Y K L
Sbjct: 204 IGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLE 262
Query: 465 SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524
+ + ++ ++HG+ DE V ++ + A +++ D
Sbjct: 263 EARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAEHL--NLVVEKD 319
Query: 525 ERHMPRRHRDRIYMEERIWEFIERTL 550
H H I + +++ L
Sbjct: 320 GDHC--CHNLGIRPRLEMADWLYDVL 343
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 58.3 bits (139), Expect = 3e-10
Identities = 30/200 (15%), Positives = 46/200 (23%), Gaps = 12/200 (6%)
Query: 355 AQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK----QGLAK 410
+G L+ D R +S L E +
Sbjct: 44 LPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRF 103
Query: 411 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVG 470
+ L G S G +++ + LA E
Sbjct: 104 GLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQVVEDPG-----VLAL 158
Query: 471 YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530
Y+ LL +HG D V + + AL + F +E
Sbjct: 159 YQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGA--- 215
Query: 531 RHRDRIYMEERIWEFIERTL 550
H M F+E L
Sbjct: 216 GHTLTPLMARVGLAFLEHWL 235
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 58.8 bits (141), Expect = 4e-10
Identities = 30/252 (11%), Positives = 57/252 (22%), Gaps = 39/252 (15%)
Query: 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG 362
++ N+G L+ P E+ P T++ G A+YL + G
Sbjct: 9 LRVNNGQELHVWETPPKEN--VPFKNNTILIASGFARRMDHFAGL-------AEYLSTNG 59
Query: 363 ILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYG 422
V++ D+ SI +IGL S
Sbjct: 60 FHVFRYDSLH---HVGLSSGSIDEFTMTTGKNS---LCTVYHWLQTKGTQNIGLIAASLS 113
Query: 423 GYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYS-------- 474
++ ++ F G + E P ++
Sbjct: 114 ARVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEV 173
Query: 475 --------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEIL 520
S + V L+ D+ V ++ +
Sbjct: 174 FVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTGHCKLY-- 231
Query: 521 IFPDERHMPRRH 532
H +
Sbjct: 232 SLLGSSHDLGEN 243
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 27/250 (10%), Positives = 60/250 (24%), Gaps = 18/250 (7%)
Query: 293 LQLEPPDIVQIQANDGTVLYGALYKPDESR----YGPP------PYKTLISVYGGPCVQL 342
+ P + G ++ + ++ Y P Y ++GG +
Sbjct: 10 YRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPYGYDPNKKYNIFYLMHGGGENEN 69
Query: 343 VCDSWINTV----DMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLT 398
S + D + ++V G F + N T
Sbjct: 70 TIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYST 129
Query: 399 GA-EWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYT 457
A + A H G G++ GG + + D + + +
Sbjct: 130 YAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQDKA 189
Query: 458 EKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPY 517
+ + V + + M + + ++ +
Sbjct: 190 NSIAEAINRSGLSKREYFVFAATGS---EDIAYANMNPQIEAMKALPHFDYTSDFSKGNF 246
Query: 518 EILIFPDERH 527
L+ P H
Sbjct: 247 YFLVAPGATH 256
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 55.0 bits (131), Expect = 7e-09
Identities = 29/259 (11%), Positives = 62/259 (23%), Gaps = 37/259 (14%)
Query: 324 GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383
G L + G W ++ G+ V ++ ++ +
Sbjct: 30 GGANSPALYLLDGLRAQDDF-SGWDINTPAF-EWYDQSGLSVVMPVGGQSSFYSDWYQPA 87
Query: 384 IKHNCGRIDAEDQLTGAE---WLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCA 440
+ + +E WL K + G S + P F A
Sbjct: 88 CGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYA 147
Query: 441 VSGAPVTS-----WDGYDTFYTEKYMGLPSEDPVG------YEYSSVMHHVHKMKGKLL- 488
+ + + G + D G ++ + + +V K+
Sbjct: 148 GAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTR 207
Query: 489 ----------------LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE-RHMPRR 531
+ E + +A A + FPD H
Sbjct: 208 VWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWEY 267
Query: 532 HRDRIYMEERIWEFIERTL 550
++ + ++R L
Sbjct: 268 WGAQL---NAMKPDLQRAL 283
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 27/158 (17%), Positives = 40/158 (25%), Gaps = 18/158 (11%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISV--YGGPCVQLVCDSWINTVDMRAQYL 358
V + DG L LY+PD P L+ Y V +T
Sbjct: 8 VMVPMRDGVRLAVDLYRPD----ADGPVPVLLVRNPYDKFDVFAW-----STQSTNWLEF 58
Query: 359 RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYG 418
G V D RG +F + D + W G++G++G
Sbjct: 59 VRDGYAVVIQDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCD-------GNVGMFG 111
Query: 419 WSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456
SY G + +
Sbjct: 112 VSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYG 149
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 48.8 bits (115), Expect = 5e-07
Identities = 20/228 (8%), Positives = 55/228 (24%), Gaps = 20/228 (8%)
Query: 297 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRA 355
P + ++ ++ + + + G Q + +
Sbjct: 14 PAKEIIWKSERLKNSRRVWIFTTGD--VTAEERPLAVLLDGEFWAQ-----SMPVWPVLT 66
Query: 356 QYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG 415
+ + + + + + +L +I +
Sbjct: 67 SLTHRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTV 126
Query: 416 LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSS 475
+ G S+GG + +P+ F C +S + W +
Sbjct: 127 VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG-----------GQQEGVLLEKL 175
Query: 476 VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 523
V +++L G+ + + R L L ++
Sbjct: 176 KAGEVSAEGLRIVLEAGIREPMIM-RANQALYAQLHPIKESIFWRQVD 222
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Score = 46.6 bits (109), Expect = 2e-06
Identities = 27/243 (11%), Positives = 57/243 (23%), Gaps = 26/243 (10%)
Query: 307 DGTVLYGALYKPDESRYGP-PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILV 365
+ +Y P Y Y L ++G + ++ A L ++G +
Sbjct: 32 TNSTRPARVYLPPG--YSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIK 89
Query: 366 WKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYL 425
+ A N + + E H + G S GG
Sbjct: 90 PLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYIESNYSVY-TDREHRAIAGLSMGGGQ 148
Query: 426 SAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG 485
S D F + + + + + +
Sbjct: 149 SFNIGLTNLDKFAYIGPISAAPNTYPNERLFPDGG-----------------KAAREKLK 191
Query: 486 KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 545
L + G D + R+ VA + + H + ++ +
Sbjct: 192 LLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQGGGHDFNVWKPGLW---NFLQM 246
Query: 546 IER 548
+
Sbjct: 247 ADE 249
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 5e-06
Identities = 33/263 (12%), Positives = 72/263 (27%), Gaps = 24/263 (9%)
Query: 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--AQ 356
+ V+ + D T+ L + S + +I ++GG
Sbjct: 5 NTVRAISPDITLFNKTLTFQEIS---QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKS 61
Query: 357 YLRSKGILVWKLDNR----GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVG 412
+ + ++ R T R L S + + +
Sbjct: 62 MDTESTVCQYSIEYRLSPEITNPRNLYDAVSNITRLVKEKGLTNINMVGHSVGATFIWQI 121
Query: 413 HIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 472
L + + + + + + S Y E P G +
Sbjct: 122 LAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQ 181
Query: 473 Y---------SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 523
V + + + LVH DE + R T LI+ L + +++ +
Sbjct: 182 MYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDD 241
Query: 524 DERHMPRRHRDRIYMEERIWEFI 546
H + +Y ++ ++I
Sbjct: 242 LGLH------NDVYKNGKVAKYI 258
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Score = 45.0 bits (105), Expect = 9e-06
Identities = 28/229 (12%), Positives = 59/229 (25%), Gaps = 34/229 (14%)
Query: 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMR--AQYL 358
+ IQ+ DG + P ++ P + + + + MR +L
Sbjct: 6 ISIQSYDGHTFGALVGSPAKAPA--------------PVIVIAQEIFGVNAFMRETVSWL 51
Query: 359 RSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYG 418
+G D G + + + Q E + A + +
Sbjct: 52 VDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQP 111
Query: 419 WSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMH 478
+S G V K + G ++
Sbjct: 112 YSNG-----------------KVGLVGYCLGGALAFLVAAKGYVDRAVGYYGVGLEKQLN 154
Query: 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527
V ++K L G ++ + +LI A ++ + + H
Sbjct: 155 KVPEVKHPALFHMGG-QDHFVPAPSRQLITEGFGANPLLQVHWYEEAGH 202
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Score = 42.9 bits (99), Expect = 6e-05
Identities = 36/275 (13%), Positives = 73/275 (26%), Gaps = 42/275 (15%)
Query: 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN 370
+Y P ++ P + ++G + ++ + +Y KG + +D
Sbjct: 46 MYVRYQIPQRAKRYP-----ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQ 100
Query: 371 RGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGG------Y 424
G R A G+ A + A Y ++
Sbjct: 101 SGRGRSATDISAINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQA 160
Query: 425 LSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE------------ 472
+ + PD + P + + + L Y
Sbjct: 161 QAELWQQMVPDWLGSMPTPNPTVANLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGIT 220
Query: 473 ---------YSSVMHHVHKMKGKLLLVHGMIDENV-----HFRHTARLINALVAARKPYE 518
+L+V G E + I+AL AA +
Sbjct: 221 AIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQ 280
Query: 519 ILIFPDE-----RHMPRRHRDRIYMEERIWEFIER 548
++ P HM + R+ + + + I ++I R
Sbjct: 281 LMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGR 315
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.3 bits (93), Expect = 3e-04
Identities = 27/248 (10%), Positives = 59/248 (23%), Gaps = 33/248 (13%)
Query: 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKL 368
V ++ + + ++ + + G + W + G+ V
Sbjct: 10 QVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQD-DYNGWDINTPA-FEEYYQSGLSVIMP 67
Query: 369 DNRGTARRGLKFEASIKHNCGRIDAEDQLTGAE---WLIKQGLAKVGHIGLYGWSYGGYL 425
++ ++ S + + E WL G S G
Sbjct: 68 VGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGS 127
Query: 426 SAITLARFPDVFQCAVSGAPVTS-----WDGYDTFYTEKYMGLPSEDPVG------YEYS 474
+ I A +P F A S + + W G + G ++ +
Sbjct: 128 ALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRN 187
Query: 475 SVMHHVHKMKGKLL-----------------LVHGMIDENVHFRHTARLINALVAARKPY 517
M + ++ + E + R + A
Sbjct: 188 DPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRN 247
Query: 518 EILIFPDE 525
+ FP
Sbjct: 248 GVFNFPPN 255
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 17/166 (10%), Positives = 37/166 (22%), Gaps = 6/166 (3%)
Query: 324 GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383
G + L ++G + + A G
Sbjct: 19 GKESRECLFLLHGSGVD---ETTLVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPTR 75
Query: 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG 443
+ + K+ + H G+S G L + + P + + A
Sbjct: 76 FEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALL 135
Query: 444 APVTSW---DGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 486
P+ D + + D + + + G
Sbjct: 136 RPMPVLDHVPATDLAGIRTLIIAGAADETYGPFVPALVTLLSRHGA 181
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.3 bits (88), Expect = 0.001
Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 16/156 (10%)
Query: 346 SWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405
+W+ + +V G +E + + +WL
Sbjct: 44 NWVTAGNAMNTLAGKGISVV--APAGGAYSMYTNWEQDGSKQWDTFLSAE---LPDWLAA 98
Query: 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV-----TSWDGYDTFYTEKY 460
G G + GGY + A PD F A S + T+ +G +++
Sbjct: 99 NRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQF 158
Query: 461 MGLPSEDPVG------YEYSSVMHHVHKMKGKLLLV 490
G+ + G +++ H + V
Sbjct: 159 GGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRV 194
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 550 | |||
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 100.0 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 100.0 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 100.0 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.95 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.95 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.94 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.94 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.94 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.92 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.92 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.9 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.9 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.9 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.89 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.88 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.88 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.88 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.88 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.87 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.87 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.86 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.85 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.85 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.85 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.85 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.85 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.84 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.84 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.84 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.84 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.84 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.83 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.82 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.82 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.82 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.81 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.81 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.81 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.81 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.8 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.8 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.8 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.8 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.8 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.8 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.8 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.79 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.79 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.78 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.78 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.77 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.77 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.77 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.76 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.76 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.75 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.75 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.74 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.7 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.69 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.67 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.67 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.67 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.67 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.66 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.62 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.59 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.54 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.49 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.46 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.41 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.4 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.39 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.37 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.36 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.35 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.31 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.29 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 99.25 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 99.21 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 99.12 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 99.1 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 99.07 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 99.01 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.98 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.96 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.95 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.94 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.88 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.84 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.83 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.79 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.79 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.78 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.77 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.76 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.75 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.64 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.62 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.62 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.58 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.58 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.57 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.56 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.53 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.44 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.44 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.43 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 98.42 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.42 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.4 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.4 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.4 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.36 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.21 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.17 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.17 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.07 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 98.05 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.02 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.02 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.99 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.99 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.91 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.9 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.9 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.86 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.79 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.76 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.7 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.69 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.55 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 97.47 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.45 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.39 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 97.34 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.27 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 97.26 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.22 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.07 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.07 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 97.04 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.03 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.98 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.84 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.79 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.79 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.66 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 96.48 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.44 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.07 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.06 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.01 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 95.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.81 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.63 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.43 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.3 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 95.23 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 93.43 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 93.29 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.21 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 93.1 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 92.99 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.46 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 91.87 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 91.81 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 91.8 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 91.46 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 91.13 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 91.09 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 90.77 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 89.79 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 88.8 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 88.13 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 87.87 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 87.65 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 83.53 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 82.78 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 81.79 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-38 Score=295.98 Aligned_cols=248 Identities=27% Similarity=0.492 Sum_probs=212.9
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
|..+++. ||..|++++++|++.. ..+|+|+||++||||++....+.|...+ ..+.|+++||+|+++|+||++++|.
T Consensus 4 ~~~~i~~-dg~~l~~~l~~P~~~~-~~~k~Pviv~~HGGp~~~~~~~~~~~~~--~~~~la~~G~~vv~~d~rGs~~~g~ 79 (258)
T d1xfda2 4 EYRDIEI-DDYNLPMQILKPATFT-DTTHYPLLLVVDGTPGSQSVAEKFEVSW--ETVMVSSHGAVVVKCDGRGSGFQGT 79 (258)
T ss_dssp CBCCEEE-TTEEECCBEEBCSSCC-SSSCEEEEEECCCCTTCCCCCCCCCCSH--HHHHHHTTCCEEECCCCTTCSSSHH
T ss_pred EEEEEee-CCeEEEEEEEECCCcC-CCCceeEEEEEcCCccccCcCCCcCcch--HHHHHhcCCcEEEEeccccccccch
Confidence 4444443 8999999999998864 3378999999999988776666665433 3567999999999999999999999
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC----CeeEEEEEcCCcCCcccccc
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP----DVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~----~~~~~~v~~~~~~~~~~~~~ 454 (550)
.+......+++..+..|++++++++.+++.+|++||+|+|+|+||+++++++...+ ..+++.+..+++..+.....
T Consensus 80 ~~~~~~~~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (258)
T d1xfda2 80 KLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYAS 159 (258)
T ss_dssp HHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBH
T ss_pred hHhhhhhccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecccc
Confidence 88888888888888999999999999999999999999999999999999887654 36788888888877766555
Q ss_pred hhhhhccCCCCCCccccccCChhhhhhcC-CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCC
Q 008873 455 FYTEKYMGLPSEDPVGYEYSSVMHHVHKM-KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 533 (550)
Q Consensus 455 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i-~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~ 533 (550)
.....+++.+..+.+.+...++...+.++ ++|+|++||+.|.+||++++.+++++|++.++++++++||+++|++....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~ 239 (258)
T d1xfda2 160 AFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSS 239 (258)
T ss_dssp HHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHH
T ss_pred ccccccccccccchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCc
Confidence 55555667777777888888888888886 58999999999999999999999999999999999999999999997777
Q ss_pred cHHHHHHHHHHHHHHhC
Q 008873 534 DRIYMEERIWEFIERTL 550 (550)
Q Consensus 534 ~~~~~~~~~~~fl~~~l 550 (550)
+...+++.+++||+++|
T Consensus 240 ~~~~~~~~~~~f~~~~~ 256 (258)
T d1xfda2 240 LKQHLYRSIINFFVECF 256 (258)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 78889999999999886
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.6e-36 Score=282.77 Aligned_cols=251 Identities=29% Similarity=0.549 Sum_probs=217.4
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+.|.+.|...+|.++.+++++|++.+ ..+|+|+||++||||+.......+.. .....+++++||+|+.+|+||++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~lP~~~~-~~kk~P~iv~~HGGp~~~~~~~~~~~--~~~~~~~a~~g~~V~~~d~rg~~~~ 78 (258)
T d2bgra2 2 PSKKLDFIILNETKFWYQMILPPHFD-KSKKYPLLLDVYAGPCSQKADTVFRL--NWATYLASTENIIVASFDGRGSGYQ 78 (258)
T ss_dssp CEEEEEEEEETTEEEEEEEEECTTCC-TTSCEEEEEECCCCTTCCCCCCCCCC--SHHHHHHHTTCCEEEEECCTTCSSS
T ss_pred CceeEEEEEeCCcEEEEEEEECCCcC-CCCCeeEEEEEcCCCCcccCCCccCc--CHHHHHHhcCCcEEEeecccccCCc
Confidence 45889999999999999999999874 33789999999999777654444433 3345667899999999999999999
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 456 (550)
+..+......+++..+..|..++++++.+++.+|+++|+++|+|+||.++++++..+|++++++++.++......+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (258)
T d2bgra2 79 GDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVY 158 (258)
T ss_dssp CHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHH
T ss_pred chHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecccccccccccc
Confidence 99888888888888889999999999999999999999999999999999999999999999999999888776665554
Q ss_pred hhhcc--CCCCCCccccccCChhhhhhcCC-CcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCC
Q 008873 457 TEKYM--GLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHR 533 (550)
Q Consensus 457 ~~~~~--g~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~ 533 (550)
.+... +..+.+.+.+...+++..+++++ +|+|++||++|++||+.++.+++++|+++|+++++++||+++|++....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~ 238 (258)
T d2bgra2 159 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASST 238 (258)
T ss_dssp HHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCTTCCSHH
T ss_pred cchhcccccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCc
Confidence 44443 33455667777888888888876 7999999999999999999999999999999999999999999997778
Q ss_pred cHHHHHHHHHHHHHHhC
Q 008873 534 DRIYMEERIWEFIERTL 550 (550)
Q Consensus 534 ~~~~~~~~~~~fl~~~l 550 (550)
+...+++.+.+||+++|
T Consensus 239 ~~~~~~~~i~~fl~~~l 255 (258)
T d2bgra2 239 AHQHIYTHMSHFIKQCF 255 (258)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 88899999999999986
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=9.1e-37 Score=284.65 Aligned_cols=248 Identities=24% Similarity=0.356 Sum_probs=212.4
Q ss_pred CCCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCC
Q 008873 293 LQLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG 372 (550)
Q Consensus 293 ~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG 372 (550)
+++...+.|+|++.||.+|+++++.|++.. ++.|+||++|||++.+. .. .+...++.|+++||+|+++|+|+
T Consensus 7 ~~~~~~~~v~~~s~dG~~i~~~l~~p~~~~---~~~Pviv~~HGG~~~~~-~~----~~~~~~~~la~~G~~v~~~d~r~ 78 (260)
T d2hu7a2 7 RSIAGSRLVWVESFDGSRVPTYVLESGRAP---TPGPTVVLVHGGPFAED-SD----SWDTFAASLAAAGFHVVMPNYRG 78 (260)
T ss_dssp HTEEEEEEEEEECTTSCEEEEEEEEETTSC---SSEEEEEEECSSSSCCC-CS----SCCHHHHHHHHHTCEEEEECCTT
T ss_pred cccCceEEEEEECCCCCEEEEEEEeCCCCC---CCceEEEEECCCCccCC-Cc----cccHHHHHHHhhccccccceeee
Confidence 445677899999999999999999997643 68899999999887653 22 34456888999999999999999
Q ss_pred CCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 373 TARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 373 ~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
+++++..+......+++..+++|+.++++++.++. +.++++|+|+|+||++++.++..+|+.++++++.+|+.++...
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~ 156 (260)
T d2hu7a2 79 STGYGEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEM 156 (260)
T ss_dssp CSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHH
T ss_pred ccccccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhh
Confidence 99999988888777777888999999999999876 6789999999999999999999999999999999999886532
Q ss_pred cc----hhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCc
Q 008873 453 DT----FYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHM 528 (550)
Q Consensus 453 ~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~ 528 (550)
.. .+..........+.+.+...+|...++++++|+||+||+.|.+||++++.+++++|+++++++++++||+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~g~~H~ 236 (260)
T d2hu7a2 157 YELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHA 236 (260)
T ss_dssp HHTCCHHHHHHHHHHHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEETTCCSS
T ss_pred hcccccccccccccccccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEECcCCCC
Confidence 21 11111112234566778889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHhC
Q 008873 529 PRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 529 ~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+...++..++++.+++||.+||
T Consensus 237 ~~~~e~~~~~~~~~~~fl~~hl 258 (260)
T d2hu7a2 237 INTMEDAVKILLPAVFFLATQR 258 (260)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHhHHHHHHHHHHHHHHHh
Confidence 9887888899999999999985
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-34 Score=288.08 Aligned_cols=276 Identities=23% Similarity=0.336 Sum_probs=223.9
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++||||||++|||.+.|++.++.+.++.+++.. .+..+.++||++|++||.++|+++|++++......... ...
T Consensus 175 ~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~--~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~--~~~ 250 (465)
T d1xfda1 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI--YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP--DDP 250 (465)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS--SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC--CCG
T ss_pred cceEEECCCCCeEEEEEecccccceeecccccccc--cceeeeeeccccCCCCCceeEEEEecCCCcEEEEEecc--CcC
Confidence 47999999999999999999999999998876543 36788999999999999999999999988765443321 112
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc----EEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG----FIW 159 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 159 (550)
...+.++..+.|+||+++++++.+|.++...|+++|+.+|+++.+..+..++|++.... .+ .+++|+ |++
T Consensus 251 ~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~-~p-----~~~~dg~~~~fi~ 324 (465)
T d1xfda1 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE-EP-----VFSKDGRKFFFIR 324 (465)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC-CC-----EECTTSCSEEEEE
T ss_pred ccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCC-ce-----eEccCCCeeEEEE
Confidence 33466889999999999999999999999999999999999999998888899864211 11 234443 444
Q ss_pred EEccCCccEEEEEe-------CCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCC
Q 008873 160 ASEKTGFRHLYLHD-------INGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP 232 (550)
Q Consensus 160 ~s~~~g~~~l~~~~-------~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~ 232 (550)
.++++|+.|+|.+. ..++..++||.|+|+|..+..|+.+++.|||+++.+++.++|||+|++ +|+. ..
T Consensus 325 ~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l--~g~~---~~ 399 (465)
T d1xfda1 325 AIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT--VGNF---NR 399 (465)
T ss_dssp EECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS--STTC---CC
T ss_pred eeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEEC--CCCC---cc
Confidence 67888888888774 345667899999999999888999999999999999999999999999 5542 34
Q ss_pred eeeC----CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhhcCCC
Q 008873 233 VKLT----NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIKRLQL 295 (550)
Q Consensus 233 ~~lt----~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~~ 295 (550)
++|| ..++.++++|||||++++..+++++.|+ +.+++..+++.++.|+.|..+.+.++++++
T Consensus 400 ~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~Le~N~~l~~~l~~~~~ 465 (465)
T d1xfda1 400 QCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDLETNEHVKKAINDRQM 465 (465)
T ss_dssp BCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEEECCHHHHHHHHTSCC
T ss_pred eeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEEcCCHHHHHHHHhccC
Confidence 4555 3456899999999999999999987665 777888889989999998877777776543
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.95 E-value=1.5e-27 Score=224.42 Aligned_cols=249 Identities=18% Similarity=0.192 Sum_probs=184.1
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
++|+|+|++.||.+|+++++.|++.+ .++|+|+||++|||++.+... .+. ......++..++.++..++++....
T Consensus 6 ~~e~v~~~s~DG~~i~~~l~~P~~~~-~~~~~P~iv~~HGG~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
T d1qfma2 6 QTVQIFYPSKDGTKIPMFIVHKKGIK-LDGSHPAFLYGYGGFNISITP-NYS---VSRLIFVRHMGGVLAVANIRGGGEY 80 (280)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTCC-CSSCSCEEEECCCCTTCCCCC-CCC---HHHHHHHHHHCCEEEEECCTTSSTT
T ss_pred EEEEEEEECCCCCEEEEEEEEcCCCC-CCCCeEEEEEECCCCcccCCC-Ccc---hhhhhhhcccceeeecccccccccc
Confidence 35889999999999999999999863 237899999999998876532 211 2234556678899999999988776
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 456 (550)
+..+..............+...++.+...+...+..+++++|+|.||+++..++...++++++++...++.++.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (280)
T d1qfma2 81 GETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYT 160 (280)
T ss_dssp HHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGST
T ss_pred chhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhcccc
Confidence 66555544444444556677777777777777888999999999999999999999999999999999988865432111
Q ss_pred h------hhccCCCCCCccc------cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHc-------CCCe
Q 008873 457 T------EKYMGLPSEDPVG------YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA-------RKPY 517 (550)
Q Consensus 457 ~------~~~~g~~~~~~~~------~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~-------~~~~ 517 (550)
. ............. +...++.........|+||+||+.|++||+.++.+++++|++. ++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~ 240 (280)
T d1qfma2 161 IGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPL 240 (280)
T ss_dssp TGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCE
T ss_pred ccccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcE
Confidence 0 0111111111111 2223333444444568999999999999999999999999754 6789
Q ss_pred EEEEcCCCCCcCCCCC-cHHHHHHHHHHHHHHhC
Q 008873 518 EILIFPDERHMPRRHR-DRIYMEERIWEFIERTL 550 (550)
Q Consensus 518 ~~~~~p~~~H~~~~~~-~~~~~~~~~~~fl~~~l 550 (550)
++++||+++|++.... +..+.+.++++||++||
T Consensus 241 ~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L 274 (280)
T d1qfma2 241 LIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCL 274 (280)
T ss_dssp EEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999986553 34567778999999986
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.95 E-value=1.4e-26 Score=234.86 Aligned_cols=279 Identities=19% Similarity=0.249 Sum_probs=210.2
Q ss_pred CccceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEccc--C
Q 008873 2 DRKTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQC--G 79 (550)
Q Consensus 2 ~~~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~--~ 79 (550)
++..++||||||++|||.+.+++.++.+.++.+.......+....++|+++|+.++...++++++++++...+.... .
T Consensus 171 ~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 250 (470)
T d2bgra1 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (470)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEEC
T ss_pred CCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccC
Confidence 45678999999999999999999999999988765543446667789999999999999999999987654221110 0
Q ss_pred C-CCCCCCCceeEEEEECCCCeEEEEEEecCCCc--eEEEEEECCCCceEEEE-----EeecCceeeccCccccCCCCCc
Q 008873 80 G-TDQNYDEEYLARVNWMHGNILTAQVLNRSQTK--LKVLKFDIKTGQRKVIL-----VEELDSWVNLHDCFTPLDKGVT 151 (550)
Q Consensus 80 ~-~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~--~~l~~~~~~~g~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~ 151 (550)
. ......+.++..+.|+++++.+++..+|.++. ..++.++..+|+...+. ......|+.......+.. .
T Consensus 251 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~ 327 (470)
T d2bgra1 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF---T 327 (470)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE---C
T ss_pred CccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCcee---e
Confidence 0 01234467888999999999988888888764 36777788888877653 223345654322111111 2
Q ss_pred cCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCC--CCceeEEEEEEeCCCCCCC
Q 008873 152 KYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD--GPLESHLYCAKLYPDWNHT 228 (550)
Q Consensus 152 ~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~--~~~~~~l~~v~~~~~g~~~ 228 (550)
.++++ +++.++++|+.|||+++.++++.++||.|+|++..+ ++.+++.|||+++.. .+..+|||+|++ +|..
T Consensus 328 ~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~--~~~d~~~iyf~a~~~~~~p~~~~ly~v~~--~g~~- 402 (470)
T d2bgra1 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI--EALTSDYLYYISNEYKGMPGGRNLYKIQL--SDYT- 402 (470)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE--EEECSSEEEEEESCGGGCTTCBEEEEEET--TCTT-
T ss_pred ecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE--EEECCCEEEEEEecCCCCcceEEEEEEEC--CCCC-
Confidence 24445 577889999999999999999999999999998875 566788999999853 467899999999 5431
Q ss_pred CCCCeeeCC-----CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCCCCChhhhh
Q 008873 229 LEAPVKLTN-----GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQPLTVPRIK 291 (550)
Q Consensus 229 ~~~~~~lt~-----~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~~~~~~~~~ 291 (550)
+.++||. ..+.++++|||||++++.++++++.|+ +.+++..+|+.++.|+.|..+.+.++
T Consensus 403 --~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~-~~l~~~~~g~~v~~le~n~~l~~~l~ 467 (470)
T d2bgra1 403 --KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPL-YTLHSSVNDKGLRVLEDNSALDKMLQ 467 (470)
T ss_dssp --CEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCE-EEEEETTTTEEEEEEECCHHHHHHHT
T ss_pred --ceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCe-EEEEECCCCCEEEEEeccHHHHHHHH
Confidence 5677764 235789999999999999999999885 67778889998999988765555544
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=3.7e-27 Score=226.00 Aligned_cols=234 Identities=17% Similarity=0.121 Sum_probs=170.9
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+.+.++|++.||..|+++++.|++. +++|+||++||+++... .+...+..|+++||+|+++|+||+|.+
T Consensus 55 ~~~~v~~~~~dg~~i~~~l~~P~~~----~~~P~vv~~HG~~~~~~-------~~~~~~~~la~~Gy~vi~~D~rG~G~s 123 (318)
T d1l7aa_ 55 KVYRLTYKSFGNARITGWYAVPDKE----GPHPAIVKYHGYNASYD-------GEIHEMVNWALHGYATFGMLVRGQQRS 123 (318)
T ss_dssp EEEEEEEEEGGGEEEEEEEEEESSC----SCEEEEEEECCTTCCSG-------GGHHHHHHHHHTTCEEEEECCTTTSSS
T ss_pred EEEEEEEECCCCcEEEEEEEecCCC----CCceEEEEecCCCCCcc-------chHHHHHHHHHCCCEEEEEeeCCCCCC
Confidence 4578999999999999999999874 68899999999876543 234457889999999999999999988
Q ss_pred chhhHHHHhhccCC--------------CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEE
Q 008873 377 GLKFEASIKHNCGR--------------IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVS 442 (550)
Q Consensus 377 ~~~~~~~~~~~~~~--------------~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~ 442 (550)
...........++. ..+.|...+++++..++.+|.++|+++|+|+||.+++..+...++.. ++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~~~-~~~~ 202 (318)
T d1l7aa_ 124 EDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPK-AAVA 202 (318)
T ss_dssp CCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSCCS-EEEE
T ss_pred CCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcccc-eEEE
Confidence 65432211111100 12568888999999999999999999999999999999999877654 4455
Q ss_pred cCCc-CCcccccch-----hh-----hhccCCCCCCc---cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHH
Q 008873 443 GAPV-TSWDGYDTF-----YT-----EKYMGLPSEDP---VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLIN 508 (550)
Q Consensus 443 ~~~~-~~~~~~~~~-----~~-----~~~~g~~~~~~---~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~ 508 (550)
..|. .++...... +. ....+...... ......++...++++++|+||+||++|.+||++++.++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~ 282 (318)
T d1l7aa_ 203 DYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYN 282 (318)
T ss_dssp ESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHH
T ss_pred eccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCCEEEEEECCCCCcCHHHHHHHHH
Confidence 4443 332111000 00 00001111011 1123345677789999999999999999999999999988
Q ss_pred HHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 509 ALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 509 ~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++ +.++++++||+++|.+. .+..+++++||++||
T Consensus 283 ~l---~~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~L 316 (318)
T d1l7aa_ 283 HL---ETKKELKVYRYFGHEYI-----PAFQTEKLAFFKQIL 316 (318)
T ss_dssp HC---CSSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHH
T ss_pred Hc---CCCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhC
Confidence 76 56899999999999762 456788999999986
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.94 E-value=7.1e-27 Score=226.79 Aligned_cols=233 Identities=15% Similarity=0.145 Sum_probs=169.7
Q ss_pred CCCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC
Q 008873 294 QLEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 373 (550)
Q Consensus 294 ~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~ 373 (550)
.-...|.+.++. +|..|+++++.|++. ++.|+||++||..+... .+..+.+.|+++||+|+++|+||+
T Consensus 102 ~~~~~e~v~ip~-dg~~l~g~l~~P~~~----~~~P~Vi~~hG~~~~~e-------~~~~~~~~l~~~G~~vl~~D~~G~ 169 (360)
T d2jbwa1 102 LSPPAERHELVV-DGIPMPVYVRIPEGP----GPHPAVIMLGGLESTKE-------ESFQMENLVLDRGMATATFDGPGQ 169 (360)
T ss_dssp SSSCEEEEEEEE-TTEEEEEEEECCSSS----CCEEEEEEECCSSCCTT-------TTHHHHHHHHHTTCEEEEECCTTS
T ss_pred CCCCeEEeecCc-CCcccceEEEecCCC----CCceEEEEeCCCCccHH-------HHHHHHHHHHhcCCEEEEEccccc
Confidence 345678899987 788999999999763 67899999999655422 223357889999999999999999
Q ss_pred CCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc
Q 008873 374 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD 453 (550)
Q Consensus 374 g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~ 453 (550)
|.+..... .......+..++++++..++.+|.+||+|+|+||||++++.++...|+ ++++|+.+|+.+.....
T Consensus 170 G~s~~~~~------~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pr-i~a~V~~~~~~~~~~~~ 242 (360)
T d2jbwa1 170 GEMFEYKR------IAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYWD 242 (360)
T ss_dssp GGGTTTCC------SCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCSTTGG
T ss_pred cccCcccc------ccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCCC-cceEEEEcccccHHHHh
Confidence 87643211 111113456778999999999999999999999999999999998775 79999999987764332
Q ss_pred ch---hhh--hcc-CCCCCC---ccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC
Q 008873 454 TF---YTE--KYM-GLPSED---PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD 524 (550)
Q Consensus 454 ~~---~~~--~~~-g~~~~~---~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~ 524 (550)
.. ... .+. +..... .......+....++++++|+|++||++|. +|+.++.++++++.. .+.+++++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~--~~~~l~~~~~ 319 (360)
T d2jbwa1 243 LETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPA--EHLNLVVEKD 319 (360)
T ss_dssp GSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCG--GGEEEEEETT
T ss_pred hhhhhhhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cCHHHHHHHHHhcCC--CCeEEEEECC
Confidence 11 111 011 111100 11122334455688999999999999997 699999999987733 3578889999
Q ss_pred CCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 525 ERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 525 ~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
++|... .+.......+.+||.++|
T Consensus 320 g~H~~~--~~~~~~~~~i~dWl~~~L 343 (360)
T d2jbwa1 320 GDHCCH--NLGIRPRLEMADWLYDVL 343 (360)
T ss_dssp CCGGGG--GGTTHHHHHHHHHHHHHH
T ss_pred CCcCCC--cChHHHHHHHHHHHHHHh
Confidence 999753 344566788999998875
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=9.8e-27 Score=223.61 Aligned_cols=235 Identities=16% Similarity=0.103 Sum_probs=169.1
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+.+.++|++.||..|+++++.|.+.. ++.|+||++||++.... . ......++++||+|+++|+||+|.+
T Consensus 54 ~~~~v~~~s~dG~~l~~~l~~P~~~~---~~~P~Vv~~hG~~~~~~---~-----~~~~~~~a~~G~~v~~~D~rG~G~s 122 (322)
T d1vlqa_ 54 EAYDVTFSGYRGQRIKGWLLVPKLEE---EKLPCVVQYIGYNGGRG---F-----PHDWLFWPSMGYICFVMDTRGQGSG 122 (322)
T ss_dssp EEEEEEEECGGGCEEEEEEEEECCSC---SSEEEEEECCCTTCCCC---C-----GGGGCHHHHTTCEEEEECCTTCCCS
T ss_pred EEEEEEEECCCCcEEEEEEEeccCCC---CCccEEEEecCCCCCcC---c-----HHHHHHHHhCCCEEEEeeccccCCC
Confidence 45789999999999999999998643 68999999999866532 1 1125578999999999999999887
Q ss_pred chhhHHHHhhc---------------------cCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCC
Q 008873 377 GLKFEASIKHN---------------------CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPD 435 (550)
Q Consensus 377 ~~~~~~~~~~~---------------------~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~ 435 (550)
+.......... .......|..++++++..++.+|++||+++|+|+||++++.++...+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~- 201 (322)
T d1vlqa_ 123 WLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK- 201 (322)
T ss_dssp SSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-
T ss_pred CCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-
Confidence 54321110000 00012578999999999999999999999999999999999888765
Q ss_pred eeEEEEEcCCcCCcc-cccc-----hhh--hhccC-CCCC---CccccccCChhhhhhcCCCcEEEEecCCCCCCChHHH
Q 008873 436 VFQCAVSGAPVTSWD-GYDT-----FYT--EKYMG-LPSE---DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 503 (550)
Q Consensus 436 ~~~~~v~~~~~~~~~-~~~~-----~~~--~~~~g-~~~~---~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 503 (550)
+++++++..|..... .... .+. ..+.. .+.. ..+.+...++..++.++++|+|++||++|.++|++++
T Consensus 202 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~~G~~D~~vp~~~~ 281 (322)
T d1vlqa_ 202 KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTV 281 (322)
T ss_dssp SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred CccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCCEEEEEeCCCCCcCHHHH
Confidence 467777776654321 1100 000 01111 1111 1133445688889999999999999999999999998
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 504 ARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 504 ~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.++++++ +.++++++||+++|.... ....+..++||+++|
T Consensus 282 ~~~~~~~---~~~~~l~~~p~~~H~~~~----~~~~~~~~~~l~~~l 321 (322)
T d1vlqa_ 282 FAAYNYY---AGPKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLF 321 (322)
T ss_dssp HHHHHHC---CSSEEEEEETTCCTTTTH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHC---CCCeEEEEECCCCCCCcc----ccCHHHHHHHHHHHh
Confidence 8887765 678999999999997632 222345678998875
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.92 E-value=1.6e-24 Score=204.89 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=154.5
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC-CCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT-ARR 376 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~-g~~ 376 (550)
+....++..||..|++|.+.|.+.. +++.|+||++||...... .+..++++|+++||.|+++|+||+ |.+
T Consensus 4 ~~~h~~~~~dg~~l~~w~~~p~~~~--~~~~~~Vvi~HG~~~~~~-------~~~~~a~~L~~~G~~Vi~~D~rGh~G~S 74 (302)
T d1thta_ 4 TIAHVLRVNNGQELHVWETPPKENV--PFKNNTILIASGFARRMD-------HFAGLAEYLSTNGFHVFRYDSLHHVGLS 74 (302)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTS--CCCSCEEEEECTTCGGGG-------GGHHHHHHHHTTTCCEEEECCCBCC---
T ss_pred eeeeEEEcCCCCEEEEEEecCcCCC--CCCCCEEEEeCCCcchHH-------HHHHHHHHHHHCCCEEEEecCCCCCCCC
Confidence 4667788899999999999997642 356789999999765532 345578999999999999999997 544
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 456 (550)
...+....... ...|+.++++++.++ +.++|+|+||||||.+++.+|.. ..++++|+.+|+.+........
T Consensus 75 ~g~~~~~~~~~----~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~ 145 (302)
T d1thta_ 75 SGSIDEFTMTT----GKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKA 145 (302)
T ss_dssp -----CCCHHH----HHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHH
T ss_pred CCcccCCCHHH----HHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHH
Confidence 43322211112 267899999999876 35689999999999999888764 3468888888887653221100
Q ss_pred hh-hcc-----CCCCC-Cc-------ccc--------c--cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHH
Q 008873 457 TE-KYM-----GLPSE-DP-------VGY--------E--YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVA 512 (550)
Q Consensus 457 ~~-~~~-----g~~~~-~~-------~~~--------~--~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 512 (550)
.. .+. ..+.. .. ..+ . ..++...++++++|+|++||++|..||++.+.++++.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~~~~~~~l~~~i~- 224 (302)
T d1thta_ 146 LGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIR- 224 (302)
T ss_dssp HSSCGGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCT-
T ss_pred HhhccchhhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhCC-
Confidence 00 000 00000 00 000 0 012456788899999999999999999999999988763
Q ss_pred cCCCeEEEEcCCCCCcCCCC-CcHHHHHHHHHHH
Q 008873 513 ARKPYEILIFPDERHMPRRH-RDRIYMEERIWEF 545 (550)
Q Consensus 513 ~~~~~~~~~~p~~~H~~~~~-~~~~~~~~~~~~f 545 (550)
..+.++.++++++|.+... +-...+++.+.++
T Consensus 225 -s~~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~ 257 (302)
T d1thta_ 225 -TGHCKLYSLLGSSHDLGENLVVLRNFYQSVTKA 257 (302)
T ss_dssp -TCCEEEEEETTCCSCTTSSHHHHHHHHHHHHHH
T ss_pred -CCCceEEEecCCCcccccChHHHHHHHHHHHHH
Confidence 3468999999999997432 2223344555444
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.92 E-value=1.5e-23 Score=185.68 Aligned_cols=208 Identities=22% Similarity=0.232 Sum_probs=152.7
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+.+.+++...+| .|.+.+..|.... ..+.+++|++|+.|......+ ......+++.|+++||.|+.+|+||.|.+
T Consensus 7 ~~~~l~i~gp~G-~l~~~~~~p~~~~--~~~~~~~vl~Hph~~~GG~~~--~~~~~~la~~l~~~G~~vlrfd~RG~G~S 81 (218)
T d2fuka1 7 ESAALTLDGPVG-PLDVAVDLPEPDV--AVQPVTAIVCHPLSTEGGSMH--NKVVTMAARALRELGITVVRFNFRSVGTS 81 (218)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTS--CCCSEEEEEECSCTTTTCSTT--CHHHHHHHHHHHTTTCEEEEECCTTSTTC
T ss_pred CceEEEEeCCCc-cEEEEEEcCCCCC--CCCCcEEEEECCCCCCCcCCC--ChHHHHHHHHHHHcCCeEEEeecCCCccC
Confidence 456688999888 5889998886532 245578888985432111000 11123357889999999999999999988
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchh
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFY 456 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 456 (550)
...+.. .....+|+.++++|+.++. +.++++++|+||||.+++.++.+. ..+++|+.+|......+
T Consensus 82 ~g~~~~------~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~~---- 147 (218)
T d2fuka1 82 AGSFDH------GDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWDF---- 147 (218)
T ss_dssp CSCCCT------TTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBCC----
T ss_pred CCccCc------CcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchhh----
Confidence 764332 2234789999999998875 457999999999999999888763 24677888775431100
Q ss_pred hhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHH
Q 008873 457 TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536 (550)
Q Consensus 457 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~ 536 (550)
...++.+|+|+|||++|+.+|+++..++++++ ..+.+++++|+++|.|.. ...
T Consensus 148 ----------------------~~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~---~~~~~l~~i~ga~H~f~~--~~~ 200 (218)
T d2fuka1 148 ----------------------SDVQPPAQWLVIQGDADEIVDPQAVYDWLETL---EQQPTLVRMPDTSHFFHR--KLI 200 (218)
T ss_dssp ----------------------TTCCCCSSEEEEEETTCSSSCHHHHHHHHTTC---SSCCEEEEETTCCTTCTT--CHH
T ss_pred ----------------------hccccccceeeEecCCCcCcCHHHHHHHHHHc---cCCceEEEeCCCCCCCCC--CHH
Confidence 01234579999999999999999988887654 456799999999998854 445
Q ss_pred HHHHHHHHHHHHhC
Q 008873 537 YMEERIWEFIERTL 550 (550)
Q Consensus 537 ~~~~~~~~fl~~~l 550 (550)
.+.+.+.+|++++|
T Consensus 201 ~l~~~~~~~v~~~l 214 (218)
T d2fuka1 201 DLRGALQHGVRRWL 214 (218)
T ss_dssp HHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhc
Confidence 68889999999886
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.90 E-value=2.5e-23 Score=189.01 Aligned_cols=210 Identities=17% Similarity=0.177 Sum_probs=151.3
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.|.|+|++.||.++.+++..|.+ +++|+||++|++.+... ....+++.|+++||.|+++|+.+.+..+
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~-----~~~P~vl~~h~~~G~~~-------~~~~~a~~lA~~Gy~vl~pd~~~~~~~~ 70 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK-----APAPVIVIAQEIFGVNA-------FMRETVSWLVDQGYAAVCPDLYARQAPG 70 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS-----SSEEEEEEECCTTBSCH-------HHHHHHHHHHHTTCEEEEECGGGGTSTT
T ss_pred ceEEEEEcCCCCEEEEEEECCCC-----CCceEEEEeCCCCCCCH-------HHHHHHHHHHhcCCcceeeeeccCCCcC
Confidence 46788999999999999999965 57999999997654321 1233578899999999999987755433
Q ss_pred hhh-----H--HHHhhc----cCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 378 LKF-----E--ASIKHN----CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 378 ~~~-----~--~~~~~~----~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
... . ...... .......|+.++++++.+.+. +..||+++|+|+||.+++.++.. +. +.++++..|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~ 147 (233)
T d1dina_ 71 TALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGV 147 (233)
T ss_dssp CBCCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCS
T ss_pred cccChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccc-cc-cceecccccc
Confidence 211 0 000000 011235788889999987764 56899999999999999998875 33 3444544331
Q ss_pred CCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCC
Q 008873 447 TSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDER 526 (550)
Q Consensus 447 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~ 526 (550)
. ..+++....++++|+|++||++|+.+|.++...+.+++ +.++++++.+||+++
T Consensus 148 ~-------------------------~~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~-~~~~~~~~~~y~ga~ 201 (233)
T d1dina_ 148 G-------------------------LEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGF-GANPLLQVHWYEEAG 201 (233)
T ss_dssp C-------------------------GGGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHH-TTCTTEEEEEETTCC
T ss_pred c-------------------------cccchhhhhccCCcceeeecccccCCCHHHHHHHHHHH-hcCCCEEEEEECCCC
Confidence 0 01233456788999999999999999999888877766 457899999999999
Q ss_pred CcCCCC-------CcHHHHHHHHHHHHHH
Q 008873 527 HMPRRH-------RDRIYMEERIWEFIER 548 (550)
Q Consensus 527 H~~~~~-------~~~~~~~~~~~~fl~~ 548 (550)
|+|... ...+..++++++||..
T Consensus 202 HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 202 HSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp TTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 998421 2234567899999864
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.90 E-value=2.2e-23 Score=192.51 Aligned_cols=189 Identities=14% Similarity=0.173 Sum_probs=145.6
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 390 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~ 390 (550)
..+.+|.|.+. .++++|+||++||..+... .+..+++.|+++||+|+++|++|.+.....
T Consensus 37 ~~~~ly~P~~~--~~g~~P~Vv~~HG~~g~~~-------~~~~~a~~lA~~Gy~V~~~d~~~~~~~~~~----------- 96 (260)
T d1jfra_ 37 GGGTIYYPTST--ADGTFGAVVISPGFTAYQS-------SIAWLGPRLASQGFVVFTIDTNTTLDQPDS----------- 96 (260)
T ss_dssp CCEEEEEESCC--TTCCEEEEEEECCTTCCGG-------GTTTHHHHHHTTTCEEEEECCSSTTCCHHH-----------
T ss_pred cCEEEEEcCCC--CCCCccEEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEeeCCCcCCchh-----------
Confidence 45778889763 2368999999999766543 234468999999999999999987654321
Q ss_pred CchHHHHHHHHHHHHc----CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCC
Q 008873 391 IDAEDQLTGAEWLIKQ----GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE 466 (550)
Q Consensus 391 ~~~~D~~~~~~~l~~~----~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~ 466 (550)
...|+.++++++.+. +.+|.+||+++|||+||.+++.++...+ +++++++.+|....
T Consensus 97 -~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~~----------------- 157 (260)
T d1jfra_ 97 -RGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNTD----------------- 157 (260)
T ss_dssp -HHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCSC-----------------
T ss_pred -hHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeeccccc-----------------
Confidence 146788888888875 5699999999999999999999998765 46777877764221
Q ss_pred CccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHH
Q 008873 467 DPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFI 546 (550)
Q Consensus 467 ~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl 546 (550)
....++++|+|++||++|.++|+++..+.+.+....+.+.+++.+++++|.+....+ ..+.+.+++||
T Consensus 158 -----------~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~ga~H~~~~~~~-~~~~~~~~~wl 225 (260)
T d1jfra_ 158 -----------KTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSD-TTIAKYSISWL 225 (260)
T ss_dssp -----------CCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEETTCCTTGGGSCC-HHHHHHHHHHH
T ss_pred -----------ccccccccceeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEECCCccCCCCCCh-HHHHHHHHHHH
Confidence 123457789999999999999998766655555556778999999999998755444 45777889999
Q ss_pred HHhC
Q 008873 547 ERTL 550 (550)
Q Consensus 547 ~~~l 550 (550)
+.||
T Consensus 226 ~~~L 229 (260)
T d1jfra_ 226 KRFI 229 (260)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9885
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.90 E-value=3e-23 Score=202.44 Aligned_cols=246 Identities=15% Similarity=0.177 Sum_probs=168.0
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcee----ecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQL----VCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~----~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
+.|.++..||++|.+.+|+|++. +|+|+||..|+...... ....+........++|+++||+||.+|.||+|
T Consensus 25 ~~v~i~~rDG~~L~~~v~~P~~~----~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g 100 (381)
T d1mpxa2 25 REVMIPMRDGVKLHTVIVLPKGA----KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKY 100 (381)
T ss_dssp EEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTST
T ss_pred EEEEEECCCCCEEEEEEEEeCCC----CCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEecCccC
Confidence 67999999999999999999763 68999999986322110 00111112233468899999999999999999
Q ss_pred CCchhhHHH-----HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCc
Q 008873 375 RRGLKFEAS-----IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSW 449 (550)
Q Consensus 375 ~~~~~~~~~-----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~ 449 (550)
+|+..+... .....+..+.+|..++++|+.+++.++.+||+++|+||||++++++|+..|+.++|+|+.+|+.|+
T Consensus 101 ~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~~~~d~ 180 (381)
T d1mpxa2 101 GSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDG 180 (381)
T ss_dssp TCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCT
T ss_pred CCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeecccccc
Confidence 988765422 122334457899999999999998889999999999999999999999999999999999999886
Q ss_pred ccccchh-------------hhh--ccCCCC-----------------------------------------CCcccccc
Q 008873 450 DGYDTFY-------------TEK--YMGLPS-----------------------------------------EDPVGYEY 473 (550)
Q Consensus 450 ~~~~~~~-------------~~~--~~g~~~-----------------------------------------~~~~~~~~ 473 (550)
..+...+ ... ..+.+. ...+.+..
T Consensus 181 ~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~ 260 (381)
T d1mpxa2 181 WMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQE 260 (381)
T ss_dssp TTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHT
T ss_pred ccccccccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCccchhhh
Confidence 4321110 000 000000 00122233
Q ss_pred CChhhh--hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHH---cCCCeEEEEcCCCCCcC-------------CCCCcH
Q 008873 474 SSVMHH--VHKMKGKLLLVHGMIDENVHFRHTARLINALVA---ARKPYEILIFPDERHMP-------------RRHRDR 535 (550)
Q Consensus 474 ~~~~~~--~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~---~~~~~~~~~~p~~~H~~-------------~~~~~~ 535 (550)
.++... ..++++|+|+++|..|...... +...++.++. .+.+.++++-|. +|.- ......
T Consensus 261 ~s~~~~~~~~~i~vP~l~i~G~~d~~~~~~-~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~~~~~~~~~~~~~ 338 (381)
T d1mpxa2 261 QALDKVMARTPLKVPTMWLQGLWDQEDMWG-AIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTAR 338 (381)
T ss_dssp TCHHHHHHTSCCCSCEEEEEETTCSSCSSH-HHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHHH
T ss_pred cCchhhhhhccccCceEEEeccccCCcccc-HHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCcCCccccccchhh
Confidence 344333 3468899999999999876544 4555555544 346788888886 5642 111223
Q ss_pred HHHHHHHHHHHHHhC
Q 008873 536 IYMEERIWEFIERTL 550 (550)
Q Consensus 536 ~~~~~~~~~fl~~~l 550 (550)
....+.+++||++||
T Consensus 339 ~~~~~~~l~wFD~~L 353 (381)
T d1mpxa2 339 QFRHDVLRPFFDQYL 353 (381)
T ss_dssp HHHHHTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh
Confidence 334556789999886
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.89 E-value=1.1e-22 Score=196.99 Aligned_cols=234 Identities=17% Similarity=0.183 Sum_probs=170.3
Q ss_pred eEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCch
Q 008873 299 DIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGL 378 (550)
Q Consensus 299 ~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~ 378 (550)
+.|.++..||+.|.+.+|+|... +|+|+||..||........ + .......+.|+++||+||++|.||+|+|+.
T Consensus 6 ~~v~ipmrDGv~L~~~vy~P~~~----~~~P~il~~~pyg~~~~~~--~-~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G 78 (347)
T d1ju3a2 6 SNVMVPMRDGVRLAVDLYRPDAD----GPVPVLLVRNPYDKFDVFA--W-STQSTNWLEFVRDGYAVVIQDTRGLFASEG 78 (347)
T ss_dssp EEEEEECTTSCEEEEEEEEECCS----SCEEEEEEEESSCTTCCHH--H-HTTSCCTHHHHHTTCEEEEEECTTSTTCCS
T ss_pred eCeEEECCCCCEEEEEEEEcCCC----CCEEEEEEEcCCCCccccC--c-CcccHHHHHHHHCCCEEEEEeeCCccccCC
Confidence 56899999999999999999763 6899999999843321111 0 012224678999999999999999999987
Q ss_pred hhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc----
Q 008873 379 KFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT---- 454 (550)
Q Consensus 379 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 454 (550)
.+.. ...+..|..++++|+.++++.| .||+++|+||||++++++|+..|..++|++...+..|+.....
T Consensus 79 ~~~~------~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~g 151 (347)
T d1ju3a2 79 EFVP------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPG 151 (347)
T ss_dssp CCCT------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTT
T ss_pred cccc------ccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcC
Confidence 6542 2234678899999999999977 6999999999999999999988999999999998877521000
Q ss_pred ---------hhhh-----------------------------------h-------------------ccCCCCCCcccc
Q 008873 455 ---------FYTE-----------------------------------K-------------------YMGLPSEDPVGY 471 (550)
Q Consensus 455 ---------~~~~-----------------------------------~-------------------~~g~~~~~~~~~ 471 (550)
.+.. . .+.......+.|
T Consensus 152 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 231 (347)
T d1ju3a2 152 GALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESW 231 (347)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHH
T ss_pred CccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhh
Confidence 0000 0 000001112345
Q ss_pred ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC------------CCCCcHHHHH
Q 008873 472 EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP------------RRHRDRIYME 539 (550)
Q Consensus 472 ~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~------------~~~~~~~~~~ 539 (550)
...++...++++++|+|+++|..|..+ ..+.+++++++. +.+.++++-|. .|.. .......++.
T Consensus 232 ~~~~~~~~~~~i~vP~L~i~G~~D~~~--~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~~~~~~~~~ 307 (347)
T d1ju3a2 232 QSISLFERLGGLATPALITAGWYDGFV--GESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEAT 307 (347)
T ss_dssp HTTCCHHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGGSCCHHHHH
T ss_pred hcCCHHHHhhcCCCCEEEeccccCCCc--chhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccccccHHHHH
Confidence 556788889999999999999999754 456788888754 55778888776 4532 1123356677
Q ss_pred HHHHHHHHHhC
Q 008873 540 ERIWEFIERTL 550 (550)
Q Consensus 540 ~~~~~fl~~~l 550 (550)
...++||++||
T Consensus 308 ~~~l~wfD~~L 318 (347)
T d1ju3a2 308 TMHKAFFDRHL 318 (347)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 88999999987
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.88 E-value=1.7e-21 Score=186.02 Aligned_cols=234 Identities=18% Similarity=0.087 Sum_probs=152.2
Q ss_pred CCeEEEEEcCCCc-EEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCCC
Q 008873 297 PPDIVQIQANDGT-VLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGTA 374 (550)
Q Consensus 297 ~~~~~~~~~~~g~-~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~g 374 (550)
..+.+++++.+|. .|.+++|+|.+.. ++.|+||++|||+......+ ....+...++ +.||+|+.+|||..+
T Consensus 49 ~~~~~~~~~~~g~~~i~~~~~~P~~~~---~~~Pvvv~iHGGG~~~g~~~----~~~~~~~~la~~~G~~V~~vdYrl~p 121 (317)
T d1lzla_ 49 SLRELSAPGLDGDPEVKIRFVTPDNTA---GPVPVLLWIHGGGFAIGTAE----SSDPFCVEVARELGFAVANVEYRLAP 121 (317)
T ss_dssp EEEEEEECCSTTCCCEEEEEEEESSCC---SCEEEEEEECCSTTTSCCGG----GGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred eEEEEEEecCCCCceEEEEEECCCCCC---CCCcEEEEecCccccccccc----ccchHHHhHHhhcCCccccccccccc
Confidence 4577888888884 6999999998642 67899999999865432111 1222344454 569999999999876
Q ss_pred CCchhhHHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCCC----eeEEEEEcCCcC
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFPD----VFQCAVSGAPVT 447 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~~----~~~~~v~~~~~~ 447 (550)
... +. ..++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+.++ .....+...+..
T Consensus 122 e~~--~~---------~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (317)
T d1lzla_ 122 ETT--FP---------GPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPEL 190 (317)
T ss_dssp TSC--TT---------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCC
T ss_pred ccc--cc---------ccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccccc
Confidence 432 11 1267888888888764 45899999999999999999988865221 112222222221
Q ss_pred Cccc-cc----------------chhhhhccC---CCCCCccccccCChhhhhhc-CCCcEEEEecCCCCCCChHHHHHH
Q 008873 448 SWDG-YD----------------TFYTEKYMG---LPSEDPVGYEYSSVMHHVHK-MKGKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 448 ~~~~-~~----------------~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~-i~~P~lii~G~~D~~v~~~~~~~~ 506 (550)
+... .. ......+.+ ....++......++...... -.+|+||++|+.|. ...++.++
T Consensus 191 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~--l~~~~~~~ 268 (317)
T d1lzla_ 191 DDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDP--LRDEGIEY 268 (317)
T ss_dssp CTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCT--THHHHHHH
T ss_pred cccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCC--CHHHHHHH
Confidence 1110 00 000001111 11222222222233222222 23799999999995 46789999
Q ss_pred HHHHHHcCCCeEEEEcCCCCCcCCC---CCcHHHHHHHHHHHHHHhC
Q 008873 507 INALVAARKPYEILIFPDERHMPRR---HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 507 ~~~l~~~~~~~~~~~~p~~~H~~~~---~~~~~~~~~~~~~fl~~~l 550 (550)
+++|++.|+++++++||+++|+|.. .....+..+++++||+++|
T Consensus 269 ~~~L~~~G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~L 315 (317)
T d1lzla_ 269 ALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGL 315 (317)
T ss_dssp HHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998742 2334456778999999886
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=2.3e-22 Score=183.79 Aligned_cols=216 Identities=14% Similarity=-0.016 Sum_probs=136.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCC
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGR 390 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~ 390 (550)
+......|. +++|+||++||.+++.. .+..+++.|+++||.|+++|+||+|.+..............
T Consensus 13 ~~~~~~~p~------~~~~~vl~lHG~~~~~~-------~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~ 79 (238)
T d1ufoa_ 13 LSVLARIPE------APKALLLALHGLQGSKE-------HILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVE 79 (238)
T ss_dssp EEEEEEEES------SCCEEEEEECCTTCCHH-------HHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHH
T ss_pred EEEEecCCC------CCCeEEEEeCCCCCCHH-------HHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhh
Confidence 344445553 34699999999776543 23345778899999999999999987643211100000000
Q ss_pred ---Cch-HHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCC
Q 008873 391 ---IDA-EDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSE 466 (550)
Q Consensus 391 ---~~~-~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~ 466 (550)
... .++.++...+...+.++..+++++|+|+||++++.++..+|+...++ +..+.......... ......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~~-~~~~~~~~~~~~~~-----~~~~~~ 153 (238)
T d1ufoa_ 80 EVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVL-AFIGSGFPMKLPQG-----QVVEDP 153 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCCCSCEE-EESCCSSCCCCCTT-----CCCCCH
T ss_pred hhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcchhhee-eeeeeccccccccc-----cccccc
Confidence 001 22223333333345567889999999999999999999888764444 43333222111100 000011
Q ss_pred CccccccCChhhhhhc-CCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC--CeEEEEcCCCCCcCCCCCcHHHHHHHHH
Q 008873 467 DPVGYEYSSVMHHVHK-MKGKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMPRRHRDRIYMEERIW 543 (550)
Q Consensus 467 ~~~~~~~~~~~~~~~~-i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~p~~~H~~~~~~~~~~~~~~~~ 543 (550)
....+...++.....+ .++|+|++||++|..||++++.+++++|++.+. +++++.+|+++|.+.. +..+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~g~gH~~~~-----~~~~~~~ 228 (238)
T d1ufoa_ 154 GVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTP-----LMARVGL 228 (238)
T ss_dssp HHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCCH-----HHHHHHH
T ss_pred cccchhhhhhhhhhhhhcCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEEECCCCCccCH-----HHHHHHH
Confidence 1112223344444433 468999999999999999999999999998876 4688899999998732 3456677
Q ss_pred HHHHHhC
Q 008873 544 EFIERTL 550 (550)
Q Consensus 544 ~fl~~~l 550 (550)
+||.++|
T Consensus 229 ~f~~~~l 235 (238)
T d1ufoa_ 229 AFLEHWL 235 (238)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887775
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.88 E-value=7.9e-22 Score=181.15 Aligned_cols=196 Identities=17% Similarity=0.091 Sum_probs=148.1
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 380 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~ 380 (550)
+.+.-.++..-...+|.|.+ ++.|+||++|||+....-.. .+...++.|+++||+|+.+|||..+... +
T Consensus 40 ~dv~Yg~~~~~~lDiy~P~~-----~~~P~vv~iHGG~w~~g~~~----~~~~~a~~l~~~G~~Vv~~~YRl~p~~~--~ 108 (261)
T d2pbla1 40 LNLSYGEGDRHKFDLFLPEG-----TPVGLFVFVHGGYWMAFDKS----SWSHLAVGALSKGWAVAMPSYELCPEVR--I 108 (261)
T ss_dssp EEEESSSSTTCEEEEECCSS-----SCSEEEEEECCSTTTSCCGG----GCGGGGHHHHHTTEEEEEECCCCTTTSC--H
T ss_pred CCcCCCCCcCeEEEEeccCC-----CCCCeEEEECCCCCccCChh----HhhhHHHHHhcCCceeeccccccccccc--C
Confidence 34443344334456788865 46799999999875432111 2344688999999999999999876543 1
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC------CeeEEEEEcCCcCCcccccc
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP------DVFQCAVSGAPVTSWDGYDT 454 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~------~~~~~~v~~~~~~~~~~~~~ 454 (550)
.. .++|+.++++|+.++. ++||+|+|||+||+++++++.... ..+++++..+|+.++.....
T Consensus 109 p~---------~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (261)
T d2pbla1 109 SE---------ITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLR 176 (261)
T ss_dssp HH---------HHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGG
T ss_pred ch---------hHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhh
Confidence 11 2789999999999874 479999999999999988876532 35799999999988765433
Q ss_pred hhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 008873 455 FYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527 (550)
Q Consensus 455 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H 527 (550)
.+....++ .+++.+...||+.++.+..+|+||+||+.|..++..|+.+++++|+ .+.+.+|+++|
T Consensus 177 ~~~~~~~~---~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~~~qs~~~~~~l~-----~~~~~~~~~~H 241 (261)
T d2pbla1 177 TSMNEKFK---MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHH 241 (261)
T ss_dssp STTHHHHC---CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCT
T ss_pred hhhccccc---CCHHHHHHhCchhhcccCCCeEEEEEecCCCchHHHHHHHHHHHhC-----CCceEeCCCCc
Confidence 33333332 2456677889999999999999999999999999999999999883 56788999999
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.88 E-value=6.7e-22 Score=194.46 Aligned_cols=241 Identities=15% Similarity=0.160 Sum_probs=172.6
Q ss_pred eEEEEEcC-----CCc--EEEEEEEcCCCCCCCCCCceEEEEEcCCCCcee-----------------------------
Q 008873 299 DIVQIQAN-----DGT--VLYGALYKPDESRYGPPPYKTLISVYGGPCVQL----------------------------- 342 (550)
Q Consensus 299 ~~~~~~~~-----~g~--~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~----------------------------- 342 (550)
|.|.+++. ||+ .|.+.+++|... +|.|+|+..+-......
T Consensus 24 e~v~v~~~~dt~rDG~~d~l~~di~rP~~~----~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (405)
T d1lnsa3 24 EVLWVESPVDSEQRGENDLIKIQIIRPKST----EKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKL 99 (405)
T ss_dssp EEEEEECSCCTTCSSSCCEEEEEEEECCCS----SCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCC
T ss_pred eEEEEeCCCCCCCCCCEeEEEEEEEccCCC----CCceEEEEeCCcCCCCcccccccccccccccccccccccccccccc
Confidence 55666654 788 599999999864 68999997654211000
Q ss_pred ----------------ecccc-cccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 343 ----------------VCDSW-INTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 343 ----------------~~~~~-~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
..... ........++++++||+||.+|.||+|+|+..+.. ++..+.+|..++|+|+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~-----~~~~e~~D~~~~IeWl~~ 174 (405)
T d1lnsa3 100 PQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTS-----GDYQQIYSMTAVIDWLNG 174 (405)
T ss_dssp CCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCT-----TSHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCcccc-----CChhhhhhHHHHHHHHHh
Confidence 00000 00111245789999999999999999999876542 233458899999999987
Q ss_pred cCCCC--------------CCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc----------chh-----
Q 008873 406 QGLAK--------------VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------TFY----- 456 (550)
Q Consensus 406 ~~~~d--------------~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~----- 456 (550)
+...+ ..||+++|.||||++++.+|+..|..++|++..+++.|+.... ..+
T Consensus 175 ~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~ 254 (405)
T d1lnsa3 175 RARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLD 254 (405)
T ss_dssp SSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHH
T ss_pred cccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhh
Confidence 54322 2489999999999999999999889899999999988752100 000
Q ss_pred ------------------------------hhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHH
Q 008873 457 ------------------------------TEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 457 ------------------------------~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~ 506 (550)
............+.|.+.++..++++|++|+|+++|..|..+++.++.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~~~~~~~~ 334 (405)
T d1lnsa3 255 VLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNF 334 (405)
T ss_dssp HHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHH
T ss_pred hhhccccccccccchhhhchhhhhhccchhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCCHHHHHHH
Confidence 00011122233456777889999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 507 INALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 507 ~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+++++ .+.+.++++.|. +|.........++.+.+++||++||
T Consensus 335 y~al~-~~~~~~Lilgpw-~H~~~~~~~~~d~~~~~~~wFD~~L 376 (405)
T d1lnsa3 335 WKALP-EGHAKHAFLHRG-AHIYMNSWQSIDFSETINAYFVAKL 376 (405)
T ss_dssp HHHSC-TTCCEEEEEESC-SSCCCTTBSSCCHHHHHHHHHHHHH
T ss_pred HHHHH-hCCCcEEEEeCC-CCCCCcccccchHHHHHHHHHHHHh
Confidence 99985 456788888885 7865333333456778899999886
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.87 E-value=3.2e-21 Score=186.52 Aligned_cols=238 Identities=16% Similarity=0.092 Sum_probs=160.4
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
..+..++++.||..|.+.+|.|++.. ++.|+||++|||+......+. ..+...++.++++|+.|+++|||..++.
T Consensus 78 ~~~~~~i~~~dg~~i~~~iy~P~~~~---~~~Pviv~~HGGG~~~gs~~~--~~~~~~~~~la~~g~~VvsvdYRla~~~ 152 (358)
T d1jkma_ 78 ETSTETILGVDGNEITLHVFRPAGVE---GVLPGLVYTHGGGMTILTTDN--RVHRRWCTDLAAAGSVVVMVDFRNAWTA 152 (358)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTCC---SCEEEEEEECCSTTTSSCSSS--HHHHHHHHHHHHTTCEEEEEECCCSEET
T ss_pred cEEEEEEeCCCCCEEEEEEEecCCCC---CCCCeEEEecCCeeeeccccc--cccchHHHHHHhhhheeeeeeecccccc
Confidence 45677888899999999999998753 678999999998654321111 1223457888899999999999987433
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhh-----CCCeeEEEEEcCCcCCcc
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLAR-----FPDVFQCAVSGAPVTSWD 450 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~-----~~~~~~~~v~~~~~~~~~ 450 (550)
..+.. ....++|+.++++|+.++ ..+|.+||+|+|.|.||++++.++.. ....+.+.++..|+.+..
T Consensus 153 ~pe~~-------~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~ 225 (358)
T d1jkma_ 153 EGHHP-------FPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGG 225 (358)
T ss_dssp TEECC-------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCC
T ss_pred cccCC-------CchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceeccc
Confidence 21111 112389999999999876 34678999999999999999877653 234567788888876542
Q ss_pred cccc-------------------------hhhhhccCCC--CCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHH
Q 008873 451 GYDT-------------------------FYTEKYMGLP--SEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHT 503 (550)
Q Consensus 451 ~~~~-------------------------~~~~~~~g~~--~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~ 503 (550)
.... .+...+.+.. ..++..+.......... --.|+||++|+.|.. ..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~-~lPp~li~~g~~D~l--~~e~ 302 (358)
T d1jkma_ 226 YAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELR-GLPPFVVAVNELDPL--RDEG 302 (358)
T ss_dssp TTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHT-TCCCEEEEEETTCTT--HHHH
T ss_pred cCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhcc-CCCCEEEEECCCCCC--HHHH
Confidence 2110 0011111111 11111111111111111 125999999999964 4688
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCCCcCC------CCCcHHHHHHHHHHHHHHh
Q 008873 504 ARLINALVAARKPYEILIFPDERHMPR------RHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 504 ~~~~~~l~~~~~~~~~~~~p~~~H~~~------~~~~~~~~~~~~~~fl~~~ 549 (550)
..++++|+++|+++++++||++.|+|. .++..+...+.+..|+..+
T Consensus 303 ~~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 303 IAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999861 1234556778888898754
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.87 E-value=4.6e-21 Score=181.90 Aligned_cols=229 Identities=17% Similarity=0.090 Sum_probs=157.4
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHH-HhCCcEEEEECCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGT 373 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l-~~~G~~vv~~d~rG~ 373 (550)
...++.++++..+| .+...+|.|+. +.|+||++|||+....-.. ....+...+ ++.|+.|+.+|||.+
T Consensus 53 ~~~~~~~~i~~~~g-~i~~~iy~P~~------~~P~il~iHGGg~~~g~~~----~~~~~~~~l~~~~g~~Vv~v~Yrla 121 (311)
T d1jjia_ 53 VERVEDRTIKGRNG-DIRVRVYQQKP------DSPVLVYYHGGGFVICSIE----SHDALCRRIARLSNSTVVSVDYRLA 121 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSS------SEEEEEEECCSTTTSCCTG----GGHHHHHHHHHHHTSEEEEEECCCT
T ss_pred cceEEEEEEeCCCC-cEEEEEEcCCC------CceEEEEEcCCCCccCChh----hhhhhhhhhhhcCCcEEEEeccccc
Confidence 34567788888777 69999999963 4599999999965432111 122234444 557999999999987
Q ss_pred CCCchhhHHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh----CCCeeEEEEEcCCc
Q 008873 374 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR----FPDVFQCAVSGAPV 446 (550)
Q Consensus 374 g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~----~~~~~~~~v~~~~~ 446 (550)
.+..- . ..++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.. ......+.++..|.
T Consensus 122 p~~~~--p---------~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~ 190 (311)
T d1jjia_ 122 PEHKF--P---------AAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPV 190 (311)
T ss_dssp TTSCT--T---------HHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCC
T ss_pred ccccc--c---------hhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecce
Confidence 64421 1 1268889999998875 46899999999999999998877643 23467888899988
Q ss_pred CCcccccchhhhhccCC----------------CCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHH
Q 008873 447 TSWDGYDTFYTEKYMGL----------------PSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINAL 510 (550)
Q Consensus 447 ~~~~~~~~~~~~~~~g~----------------~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l 510 (550)
.+............-+. +..........+|+....+-.+|+||++|+.|.. ..++.+++++|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l--~d~~~~~~~~L 268 (311)
T d1jjia_ 191 VNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPL--RDEGEVFGQML 268 (311)
T ss_dssp CCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTT--HHHHHHHHHHH
T ss_pred eeeccCcccccccccccccccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCC--hHHHHHHHHHH
Confidence 87653221111100000 0011111122355554444447999999999965 45889999999
Q ss_pred HHcCCCeEEEEcCCCCCcCCC----CCcHHHHHHHHHHHHH
Q 008873 511 VAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIE 547 (550)
Q Consensus 511 ~~~~~~~~~~~~p~~~H~~~~----~~~~~~~~~~~~~fl~ 547 (550)
+++|+++++++|++++|+|.. .....+..+.+.+||.
T Consensus 269 ~~~Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl~ 309 (311)
T d1jjia_ 269 RRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLV 309 (311)
T ss_dssp HHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHhC
Confidence 999999999999999998732 2234567788888873
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.3e-21 Score=174.06 Aligned_cols=193 Identities=16% Similarity=0.086 Sum_probs=136.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|..+++....|... ...|.||++||.+++.. .|.. ....+.|+++||.|+++|+||+|.+...-...
T Consensus 14 ~G~~i~y~~~~~~~~----~~~~~vvllHG~~~~~~---~w~~--~~~~~~la~~gy~via~D~~G~G~S~~~~~~~--- 81 (208)
T d1imja_ 14 QGQALFFREALPGSG----QARFSVLLLHGIRFSSE---TWQN--LGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPA--- 81 (208)
T ss_dssp TTEEECEEEEECSSS----CCSCEEEECCCTTCCHH---HHHH--HTHHHHHHHTTCEEEEECCTTSGGGTTSCCSS---
T ss_pred CCEEEEEEEecCCCC----CCCCeEEEECCCCCChh---HHhh--hHHHHHHHHcCCeEEEeecccccCCCCCCccc---
Confidence 889999988888643 34577889999876543 2211 11257789999999999999998765321111
Q ss_pred ccCC-CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCC
Q 008873 387 NCGR-IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPS 465 (550)
Q Consensus 387 ~~~~-~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~ 465 (550)
.... ...+++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|+.+|...- .
T Consensus 82 ~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~---------~------ 140 (208)
T d1imja_ 82 PIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTD---------K------ 140 (208)
T ss_dssp CTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGG---------G------
T ss_pred ccchhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccc---------c------
Confidence 1111 1123344444443 4468899999999999999999999999999998875210 0
Q ss_pred CCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHH
Q 008873 466 EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 545 (550)
Q Consensus 466 ~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~f 545 (550)
.......++++|+|+++|++|..+|... +. + ..-...++.++++++|.. ..++.+.+.+.+++|
T Consensus 141 ---------~~~~~~~~i~~P~Lii~G~~D~~~~~~~--~~---~-~~~~~~~~~~i~~~gH~~-~~~~p~~~~~~l~~F 204 (208)
T d1imja_ 141 ---------INAANYASVKTPALIVYGDQDPMGQTSF--EH---L-KQLPNHRVLIMKGAGHPC-YLDKPEEWHTGLLDF 204 (208)
T ss_dssp ---------SCHHHHHTCCSCEEEEEETTCHHHHHHH--HH---H-TTSSSEEEEEETTCCTTH-HHHCHHHHHHHHHHH
T ss_pred ---------cccccccccccccccccCCcCcCCcHHH--HH---H-HhCCCCeEEEECCCCCch-hhhCHHHHHHHHHHH
Confidence 0124567889999999999998876442 22 2 234578999999999975 345677889999999
Q ss_pred HHH
Q 008873 546 IER 548 (550)
Q Consensus 546 l~~ 548 (550)
|++
T Consensus 205 l~~ 207 (208)
T d1imja_ 205 LQG 207 (208)
T ss_dssp HHT
T ss_pred Hhc
Confidence 974
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.85 E-value=4.6e-21 Score=170.17 Aligned_cols=192 Identities=13% Similarity=0.071 Sum_probs=137.1
Q ss_pred EEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh-cc----C
Q 008873 315 LYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH-NC----G 389 (550)
Q Consensus 315 ~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~-~~----~ 389 (550)
++.|... +++|+||++||.+++.. .+..+++.++ .++.|++++....+..+..+...... .. .
T Consensus 5 i~~~~~~----~~~P~vi~lHG~g~~~~-------~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (202)
T d2h1ia1 5 VFQKGKD----TSKPVLLLLHGTGGNEL-------DLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDL 72 (202)
T ss_dssp EEECCSC----TTSCEEEEECCTTCCTT-------TTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHH
T ss_pred cCCCCCC----CCCCEEEEECCCCCCHH-------HHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHH
Confidence 5666542 56799999999755422 2333455555 58889998765332211111000000 00 0
Q ss_pred CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCcc
Q 008873 390 RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPV 469 (550)
Q Consensus 390 ~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 469 (550)
....+++...+.++.++..+|++||+++|+|+||++++.++..+|+++.++++.+|.....
T Consensus 73 ~~~~~~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~------------------- 133 (202)
T d2h1ia1 73 IFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR------------------- 133 (202)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS-------------------
T ss_pred HHHHHHHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc-------------------
Confidence 0124567777778888888999999999999999999999999999999999988753310
Q ss_pred ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 470 GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 470 ~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
..........|++++||++|++||++++.+++++|++.+.++++..||+ +|.+. .+..+.+.+||++.
T Consensus 134 ------~~~~~~~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~~~~~~~wl~k~ 201 (202)
T d2h1ia1 134 ------GMQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLT-----MGEVEKAKEWYDKA 201 (202)
T ss_dssp ------SCCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHHHHHHHHHHHHH
T ss_pred ------cccccccccchhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHHh
Confidence 0111233457999999999999999999999999999999999999997 89873 34578899999885
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.85 E-value=5.4e-20 Score=173.52 Aligned_cols=217 Identities=17% Similarity=0.145 Sum_probs=146.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|.+|++..+-++ ..|.||++||.+.+.. .|. ..+.+.|.++||.|+++|+||+|.+......
T Consensus 8 g~~~i~y~~~G~~-------~~p~vvl~HG~~~~~~---~~~---~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~~---- 70 (297)
T d1q0ra_ 8 GDVELWSDDFGDP-------ADPALLLVMGGNLSAL---GWP---DEFARRLADGGLHVIRYDHRDTGRSTTRDFA---- 70 (297)
T ss_dssp TTEEEEEEEESCT-------TSCEEEEECCTTCCGG---GSC---HHHHHHHHTTTCEEEEECCTTSTTSCCCCTT----
T ss_pred CCEEEEEEEecCC-------CCCEEEEECCCCcChh---HHH---HHHHHHHHhCCCEEEEEeCCCCccccccccc----
Confidence 6788988888543 2378899999876543 221 2346788899999999999999987532211
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-------------
Q 008873 387 NCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------------- 453 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~------------- 453 (550)
.....+.|+.+.+..+.+.- +.+++.++|||+||.+++.+|..+|++++++++.++........
T Consensus 71 -~~~~~~~~~~~d~~~ll~~l--~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~ 147 (297)
T d1q0ra_ 71 -AHPYGFGELAADAVAVLDGW--GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTL 147 (297)
T ss_dssp -TSCCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCS
T ss_pred -ccccccchhhhhhccccccc--cccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhh
Confidence 11224566655555555442 45689999999999999999999999999999887653211000
Q ss_pred -------ch------------------hhh-----hcc---CCCCCC---------------------ccc----cccCC
Q 008873 454 -------TF------------------YTE-----KYM---GLPSED---------------------PVG----YEYSS 475 (550)
Q Consensus 454 -------~~------------------~~~-----~~~---g~~~~~---------------------~~~----~~~~~ 475 (550)
.. ... ..+ ..+... ... ....+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (297)
T d1q0ra_ 148 DGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPS 227 (297)
T ss_dssp SCSCCCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGG
T ss_pred hhhhhhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhcccc
Confidence 00 000 000 001000 000 01112
Q ss_pred hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 476 VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 476 ~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
....++++++|+|+++|++|..+|+..+..+.+.+ .+.+++++|++||.+ ..+....+.+.|++||+.
T Consensus 228 ~~~~l~~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~----p~~~~~~i~~~gH~~-~~e~p~~~~~~i~~~l~~ 295 (297)
T d1q0ra_ 228 RAAELREVTVPTLVIQAEHDPIAPAPHGKHLAGLI----PTARLAEIPGMGHAL-PSSVHGPLAEVILAHTRS 295 (297)
T ss_dssp GGGGGGGCCSCEEEEEETTCSSSCTTHHHHHHHTS----TTEEEEEETTCCSSC-CGGGHHHHHHHHHHHHHH
T ss_pred chhhhhccCCceEEEEeCCCCCCCHHHHHHHHHhC----CCCEEEEECCCCCcc-hhhCHHHHHHHHHHHHHh
Confidence 33457788999999999999999998887766544 467999999999987 557778888999999875
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.85 E-value=1.9e-20 Score=177.85 Aligned_cols=233 Identities=20% Similarity=0.190 Sum_probs=154.2
Q ss_pred CCCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhC-CcEEEEECCCCC
Q 008873 295 LEPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK-GILVWKLDNRGT 373 (550)
Q Consensus 295 ~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~-G~~vv~~d~rG~ 373 (550)
...++.+.++. +|.+|.+.+|+|++.. +++|+||++|||+....... ....+...++.+ |+.|+.+|||..
T Consensus 43 ~~~~~~~~~~~-~g~~i~~~~y~P~~~~---~~~Pvvv~iHGGg~~~g~~~----~~~~~~~~~a~~~~~~v~~v~Yrl~ 114 (308)
T d1u4na_ 43 VAEVREFDMDL-PGRTLKVRMYRPEGVE---PPYPALVYYHGGGWVVGDLE----THDPVCRVLAKDGRAVVFSVDYRLA 114 (308)
T ss_dssp CSEEEEEEEEE-TTEEEEEEEEECTTCC---SSEEEEEEECCSTTTSCCTT----TTHHHHHHHHHHHTSEEEEECCCCT
T ss_pred CCcEEEEEEec-CCceEEEEEEeccccC---CCCCEEEEEecCeeeeeccc----cccchhhhhhhcccccccccccccc
Confidence 34466777776 7888999999998643 57999999999865432111 223345555554 567889999977
Q ss_pred CCCchhhHHHHhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhCC----CeeEEEEEcCCc
Q 008873 374 ARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARFP----DVFQCAVSGAPV 446 (550)
Q Consensus 374 g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~~----~~~~~~v~~~~~ 446 (550)
....- ....+|+..+++|+.++ ..+|++||+|+|+|+||++++.++.... ..+.+.....+.
T Consensus 115 p~~~~-----------p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~ 183 (308)
T d1u4na_ 115 PEHKF-----------PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPS 183 (308)
T ss_dssp TTSCT-----------THHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCC
T ss_pred ccccc-----------ccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccc
Confidence 54321 11268999999999875 3589999999999999999998876532 233444555554
Q ss_pred CCcccccc--hh-----------------hhhccCCCCCCccccccCChhhhhhcCC-CcEEEEecCCCCCCChHHHHHH
Q 008873 447 TSWDGYDT--FY-----------------TEKYMGLPSEDPVGYEYSSVMHHVHKMK-GKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 447 ~~~~~~~~--~~-----------------~~~~~g~~~~~~~~~~~~~~~~~~~~i~-~P~lii~G~~D~~v~~~~~~~~ 506 (550)
.+...... .. ...+.+ ..........++....+... .|+||+||+.|..+ .++..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l~--~~~~~~ 259 (308)
T d1u4na_ 184 TGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLN--SLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKLY 259 (308)
T ss_dssp CCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCS--SGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHHH
T ss_pred cccccccccchhhhccccccccchhhhhhhhcccC--ccccccchhhhhhhchhhcCCCCeeEEecCcCCch--HHHHHH
Confidence 43221100 00 000111 11111111122222222222 48999999999654 688999
Q ss_pred HHHHHHcCCCeEEEEcCCCCCcCCC----CCcHHHHHHHHHHHHHHhC
Q 008873 507 INALVAARKPYEILIFPDERHMPRR----HRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 507 ~~~l~~~~~~~~~~~~p~~~H~~~~----~~~~~~~~~~~~~fl~~~l 550 (550)
+++|++.|+++++++||+++|+|.. .....+.++++.+||++.|
T Consensus 260 ~~~L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 260 AEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998732 2235678889999998865
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.85 E-value=9.4e-20 Score=162.99 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=153.6
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh
Q 008873 301 VQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF 380 (550)
Q Consensus 301 ~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~ 380 (550)
|.|...+| +|++++..|.. +..|++|++||.|....-.+ .......++.|+++||.|+.+|+||.|.+...+
T Consensus 3 v~i~g~~G-~Le~~~~~~~~-----~~~~~~l~~Hp~p~~GG~~~--~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~~ 74 (218)
T d2i3da1 3 VIFNGPAG-RLEGRYQPSKE-----KSAPIAIILHPHPQFGGTMN--NQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEF 74 (218)
T ss_dssp EEEEETTE-EEEEEEECCSS-----TTCCEEEEECCCGGGTCCTT--SHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCC
T ss_pred EEEeCCCc-cEEEEEeCCCC-----CCCCEEEEECCCcCcCCcCC--cHHHHHHHHHHHhcCeeEEEEecCccCCCcccc
Confidence 67888888 79998765543 34589999998543211000 111223567789999999999999999886554
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhc
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY 460 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 460 (550)
. .+..+.+|..++++|+..+.. +..++.++|+|+||.+++.++.+.+.. .++++.+|.....
T Consensus 75 ~------~~~~e~~d~~aa~~~~~~~~~-~~~~~~~~g~S~G~~~a~~~a~~~~~~-~~~~~~~~~~~~~---------- 136 (218)
T d2i3da1 75 D------HGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPEI-EGFMSIAPQPNTY---------- 136 (218)
T ss_dssp C------SSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTTE-EEEEEESCCTTTS----------
T ss_pred c------cchhHHHHHHHHHhhhhcccc-cccceeEEeeehHHHHHHHHHHhhccc-cceeecccccccc----------
Confidence 3 233457899999999998764 335788999999999999999887665 4555555432210
Q ss_pred cCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHc-CCCeEEEEcCCCCCcCCCCCcHHHHH
Q 008873 461 MGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA-RKPYEILIFPDERHMPRRHRDRIYME 539 (550)
Q Consensus 461 ~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~-~~~~~~~~~p~~~H~~~~~~~~~~~~ 539 (550)
....+.....|+|++||+.|..++.....++.+.++.. +...++.++|+++|.|. .....+.
T Consensus 137 ---------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~--g~~~~l~ 199 (218)
T d2i3da1 137 ---------------DFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN--GKVDELM 199 (218)
T ss_dssp ---------------CCTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--TCHHHHH
T ss_pred ---------------chhhccccCCCceeeecccceecChHHHHHHHHHHhhccCCCccEEEeCCCCCCCc--CCHHHHH
Confidence 01223445679999999999999999999999988763 56789999999999885 3557888
Q ss_pred HHHHHHHHHhC
Q 008873 540 ERIWEFIERTL 550 (550)
Q Consensus 540 ~~~~~fl~~~l 550 (550)
+.+.+||+++|
T Consensus 200 ~~v~~~l~~~l 210 (218)
T d2i3da1 200 GECEDYLDRRL 210 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999875
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=9.3e-21 Score=177.68 Aligned_cols=219 Identities=20% Similarity=0.230 Sum_probs=141.4
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
...+|.+|++..+..+. ..|+||++||++++.. .| ......++++||.|+++|+||+|.+......
T Consensus 7 ~~~~g~~i~y~~~g~~~------~~~~iv~lHG~~g~~~---~~----~~~~~~~~~~~~~vi~~D~~G~G~S~~~~~~- 72 (290)
T d1mtza_ 7 AKVNGIYIYYKLCKAPE------EKAKLMTMHGGPGMSH---DY----LLSLRDMTKEGITVLFYDQFGCGRSEEPDQS- 72 (290)
T ss_dssp EEETTEEEEEEEECCSS------CSEEEEEECCTTTCCS---GG----GGGGGGGGGGTEEEEEECCTTSTTSCCCCGG-
T ss_pred EEECCEEEEEEEcCCCC------CCCeEEEECCCCCchH---HH----HHHHHHHHHCCCEEEEEeCCCCccccccccc-
Confidence 33589999888776432 3488999999876543 12 2234557788999999999999987532111
Q ss_pred HhhccCCCchHHHHHHHHHHHHc-CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc---------
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQ-GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD--------- 453 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--------- 453 (550)
...+++..+.+..+.++ . ..+++.++||||||.+++.++.++|+++++++..+++.......
T Consensus 73 ------~~~~~~~~~~l~~ll~~l~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 144 (290)
T d1mtza_ 73 ------KFTIDYGVEEAEALRSKLF--GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDE 144 (290)
T ss_dssp ------GCSHHHHHHHHHHHHHHHH--TTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHT
T ss_pred ------cccccchhhhhhhhhcccc--cccccceecccccchhhhhhhhcChhhheeeeecccccCcccchhhhhhhhhh
Confidence 11233333333333322 1 23589999999999999999999999999999988764321000
Q ss_pred --------------------chh--------hhhccCCCCCCc---------------------------cccccCChhh
Q 008873 454 --------------------TFY--------TEKYMGLPSEDP---------------------------VGYEYSSVMH 478 (550)
Q Consensus 454 --------------------~~~--------~~~~~g~~~~~~---------------------------~~~~~~~~~~ 478 (550)
..+ ............ ......+...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (290)
T d1mtza_ 145 LPAKYRDAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITD 224 (290)
T ss_dssp SCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTT
T ss_pred hhHHHHHHHHHhhhhccccchhHHHHHHHHhhhhhcccccchHHHHHHHHHHhhhhhhhhhcchhHHhHhhhhhcccHHH
Confidence 000 000000000000 0011122344
Q ss_pred hhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 479 HVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 479 ~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
...++++|+|+++|++|..+| ..+..+.+.+ .+.++.+++++||.+ ..++.+.+.+.+.+||++||
T Consensus 225 ~~~~i~~P~l~i~G~~D~~~~-~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~FL~~h~ 290 (290)
T d1mtza_ 225 KISAIKIPTLITVGEYDEVTP-NVARVIHEKI----AGSELHVFRDCSHLT-MWEDREGYNKLLSDFILKHL 290 (290)
T ss_dssp TGGGCCSCEEEEEETTCSSCH-HHHHHHHHHS----TTCEEEEETTCCSCH-HHHSHHHHHHHHHHHHHTCC
T ss_pred HhhcccceEEEEEeCCCCCCH-HHHHHHHHHC----CCCEEEEECCCCCch-HHhCHHHHHHHHHHHHHHhC
Confidence 567788999999999998764 5555555443 467899999999987 34567889999999999986
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.84 E-value=7.4e-21 Score=172.77 Aligned_cols=204 Identities=17% Similarity=0.201 Sum_probs=133.1
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
+.||++||.+++.. .|..+++.|+++||.|+++|+||+|.+........... ...+...++..+...
T Consensus 12 ~~vvliHG~~~~~~-------~~~~l~~~L~~~G~~v~~~D~~G~G~s~~~~~~~~~~~----~~~~~~~~~~~~~~~-- 78 (242)
T d1tqha_ 12 RAVLLLHGFTGNSA-------DVRMLGRFLESKGYTCHAPIYKGHGVPPEELVHTGPDD----WWQDVMNGYEFLKNK-- 78 (242)
T ss_dssp CEEEEECCTTCCTH-------HHHHHHHHHHHTTCEEEECCCTTSSSCHHHHTTCCHHH----HHHHHHHHHHHHHHH--
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEeCCCCccccccccccchhH----HHHHHHHHHhhhhhc--
Confidence 56778999766532 34557889999999999999999997754322111111 133444445444443
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc--c---ch---hhh--------------hccCCCCC
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY--D---TF---YTE--------------KYMGLPSE 466 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~--~---~~---~~~--------------~~~g~~~~ 466 (550)
+.++++++|||+||.+++.++.++|.....+++.+........ . .. +.. ........
T Consensus 79 -~~~~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (242)
T d1tqha_ 79 -GYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMK 157 (242)
T ss_dssp -TCCCEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCT
T ss_pred -ccCceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccc
Confidence 3478999999999999999999988765544433222211000 0 00 000 00000000
Q ss_pred Cccc--cccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHH
Q 008873 467 DPVG--YEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWE 544 (550)
Q Consensus 467 ~~~~--~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~ 544 (550)
.... .........+..+++|+|+++|++|..+|++.+.++++.+ .+.++++++++++||.+...+..+.+.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~ 235 (242)
T d1tqha_ 158 TLKALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEI--ESPVKQIKWYEQSGHVITLDQEKDQLHEDIYA 235 (242)
T ss_dssp THHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHC--CCSSEEEEEETTCCSSGGGSTTHHHHHHHHHH
T ss_pred hhhcccccccccccccceeccccceeecccCCccCHHHHHHHHHHc--CCCCcEEEEECCCCCcCccccCHHHHHHHHHH
Confidence 0000 0011223456778899999999999999999999998876 24568999999999987555667889999999
Q ss_pred HHHH
Q 008873 545 FIER 548 (550)
Q Consensus 545 fl~~ 548 (550)
||++
T Consensus 236 Fl~~ 239 (242)
T d1tqha_ 236 FLES 239 (242)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9986
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.84 E-value=1.8e-20 Score=183.30 Aligned_cols=247 Identities=17% Similarity=0.207 Sum_probs=166.8
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCcee---eccc--ccccchhHhHHHHhCCcEEEEECCCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQL---VCDS--WINTVDMRAQYLRSKGILVWKLDNRG 372 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~---~~~~--~~~~~~~~~~~l~~~G~~vv~~d~rG 372 (550)
.+.|.++..||++|.+.+|+|.+. +|+|+||..|+...... .... .........++|+++||+||.+|.||
T Consensus 28 ~~~v~ipmrDG~~L~~~v~~P~~~----~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG 103 (385)
T d2b9va2 28 KREVMVPMRDGVKLYTVIVIPKNA----RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRG 103 (385)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTC----CSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTT
T ss_pred EeEEEEECCCCCEEEEEEEEcCCC----CceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEEcCCc
Confidence 467999999999999999999763 68999999875321100 0000 00111234688999999999999999
Q ss_pred CCCCchhhHHH-----HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 373 TARRGLKFEAS-----IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 373 ~g~~~~~~~~~-----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
+|+|+.++... ....++..+.+|..++++|+.+++..+..||+++|+||||++++.+|...++.++|++..++..
T Consensus 104 ~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~~~~~ 183 (385)
T d2b9va2 104 KYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMV 183 (385)
T ss_dssp STTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECC
T ss_pred ccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEecccc
Confidence 99998876532 2234455678999999999999987788999999999999999999998899999999988877
Q ss_pred Ccccccch-------------hhhh--ccC----CCCC-------------------------------------Ccccc
Q 008873 448 SWDGYDTF-------------YTEK--YMG----LPSE-------------------------------------DPVGY 471 (550)
Q Consensus 448 ~~~~~~~~-------------~~~~--~~g----~~~~-------------------------------------~~~~~ 471 (550)
++...... +... ..+ .+.. ..+.+
T Consensus 184 d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~w 263 (385)
T d2b9va2 184 DGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAFW 263 (385)
T ss_dssp CTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHHH
T ss_pred cccccccccCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhhccCcccchhh
Confidence 65321100 0000 000 0000 00222
Q ss_pred ccCChhhhh--hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC--CCeEEEEcCCCCCcCCC------------CC-c
Q 008873 472 EYSSVMHHV--HKMKGKLLLVHGMIDENVHFRHTARLINALVAAR--KPYEILIFPDERHMPRR------------HR-D 534 (550)
Q Consensus 472 ~~~~~~~~~--~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~--~~~~~~~~p~~~H~~~~------------~~-~ 534 (550)
...++...+ .++.+|+|++.|..|... ...+.+.+++++... .+.++++-|. .|.... .+ .
T Consensus 264 ~~~s~~~~~~~~~i~vP~l~~~g~~dd~~-~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~~~g~~~~~~~~~ 341 (385)
T d2b9va2 264 QGQALDKILAQRKPTVPMLWEQGLWDQED-MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDTA 341 (385)
T ss_dssp HTTCHHHHHHHHCCCSCEEEEEETTCSSC-SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCHH
T ss_pred hhcChhHHHhhccccCceEEEEecccCCc-ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCcccccccccccccCcccc
Confidence 333443333 356679999999887654 456677777777654 4678877776 564211 11 2
Q ss_pred HHHHHHHHHHHHHHhC
Q 008873 535 RIYMEERIWEFIERTL 550 (550)
Q Consensus 535 ~~~~~~~~~~fl~~~l 550 (550)
...+.+.+++||++||
T Consensus 342 ~~~~~~~~l~WFD~~L 357 (385)
T d2b9va2 342 HQYRRDVFRPFFDEYL 357 (385)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHc
Confidence 3334566789999886
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.84 E-value=7.4e-20 Score=168.65 Aligned_cols=208 Identities=11% Similarity=-0.019 Sum_probs=137.5
Q ss_pred CCCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhC----CcEEEEEC
Q 008873 295 LEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK----GILVWKLD 369 (550)
Q Consensus 295 ~~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~----G~~vv~~d 369 (550)
..+.+.++|.+. +|.++.+++|+|++.. ..+++|+||++||+++..................+... .+.+...+
T Consensus 19 ~g~~~~~~~~S~~~g~~~~~~v~lP~~y~-~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (255)
T d1jjfa_ 19 RGQVVNISYFSTATNSTRPARVYLPPGYS-KDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPN 97 (255)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEECTTCC-TTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEEC
T ss_pred ceEEEEEEEEecCCCCEEEEEEEeCCCCC-CCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeecc
Confidence 356788888764 6889999999999864 34789999999997765431111111111112223332 24455555
Q ss_pred CCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc--CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 370 NRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ--GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 370 ~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
................ ...+.+.+.++.++ ..+|+++|+++|+|+||++++.++.++|++|+++++.+|..
T Consensus 98 ~~~~~~~~~~~~~~~~-------~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~ 170 (255)
T d1jjfa_ 98 TNAAGPGIADGYENFT-------KDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP 170 (255)
T ss_dssp CCCCCTTCSCHHHHHH-------HHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCT
T ss_pred cccccccccccccchH-------HHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCc
Confidence 4433222211111111 12233344455543 34789999999999999999999999999999999998865
Q ss_pred CcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCC
Q 008873 448 SWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERH 527 (550)
Q Consensus 448 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H 527 (550)
+....... .........+...|++|.||+.|..++ .+.+++++|+++++++++.++++++|
T Consensus 171 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~~~~~~~ggH 231 (255)
T d1jjfa_ 171 NTYPNERL-----------------FPDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQGGGH 231 (255)
T ss_dssp TSCCHHHH-----------------CTTTTHHHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEETTCCS
T ss_pred CCcccccc-----------------cccHHHHhhccCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEEEEEECCCCc
Confidence 43221111 111223445556799999999999866 46789999999999999999999999
Q ss_pred cC
Q 008873 528 MP 529 (550)
Q Consensus 528 ~~ 529 (550)
.+
T Consensus 232 ~~ 233 (255)
T d1jjfa_ 232 DF 233 (255)
T ss_dssp SH
T ss_pred CH
Confidence 86
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.84 E-value=1.8e-20 Score=174.44 Aligned_cols=217 Identities=17% Similarity=0.177 Sum_probs=139.2
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHH
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEA 382 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~ 382 (550)
+++.||.+|++..+- . + |.||++||.+.+.. .|...++.|+++||.|+++|+||+|.+.....
T Consensus 3 ~~t~dG~~l~y~~~G-~------g--~~ivlvHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~- 65 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDWG-Q------G--RPVVFIHGWPLNGD-------AWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWD- 65 (274)
T ss_dssp EECTTSCEEEEEEEC-S------S--SEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS-
T ss_pred EECcCCCEEEEEEEC-C------C--CeEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEeCCCCcccccccc-
Confidence 677899988877652 1 1 45788999866542 34455778889999999999999997754321
Q ss_pred HHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh-CCCeeEEEEEcCCcCCcccc---------
Q 008873 383 SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR-FPDVFQCAVSGAPVTSWDGY--------- 452 (550)
Q Consensus 383 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~-~~~~~~~~v~~~~~~~~~~~--------- 452 (550)
.....+....+..+.+.- ..+++.++|||+||.+++.++++ .|+++++++..++.......
T Consensus 66 -------~~~~~~~~~dl~~~l~~l--~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~ 136 (274)
T d1a8qa_ 66 -------GYDFDTFADDLNDLLTDL--DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVP 136 (274)
T ss_dssp -------CCSHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBC
T ss_pred -------cccchhhHHHHHHHHHHh--hhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhh
Confidence 122333333333333321 34689999999999988876554 58899998887764321100
Q ss_pred c----c--------------hhhhhccCC--CCCCc------------------------cccccCChhhhhhcCCCcEE
Q 008873 453 D----T--------------FYTEKYMGL--PSEDP------------------------VGYEYSSVMHHVHKMKGKLL 488 (550)
Q Consensus 453 ~----~--------------~~~~~~~g~--~~~~~------------------------~~~~~~~~~~~~~~i~~P~l 488 (550)
. . ...+.+... +.... ..+...+....+.++++|+|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl 216 (274)
T d1a8qa_ 137 DEVFDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTL 216 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEE
T ss_pred HHHHHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccceee
Confidence 0 0 000111110 10000 00111222345678899999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC-CCCcHHHHHHHHHHHHHH
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR-RHRDRIYMEERIWEFIER 548 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~-~~~~~~~~~~~~~~fl~~ 548 (550)
+++|++|..+|++...+..+++ -.++++++++++||... ..++...+.+.+.+||++
T Consensus 217 ii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 217 VVHGDDDQVVPIDATGRKSAQI---IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred eeccCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 9999999999987665544433 34679999999999863 345677888999999974
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=3.2e-20 Score=172.03 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=129.6
Q ss_pred CCceEEEEEcCCCCceeecc--cccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCD--SWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~--~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
++.|+||++|||+....... .|......+++.++++||.|+++|||.++...- . ..++|+.++++|+
T Consensus 29 ~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~~--~---------~~~~d~~~~~~~l 97 (263)
T d1vkha_ 29 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEITN--P---------RNLYDAVSNITRL 97 (263)
T ss_dssp TCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSCT--T---------HHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchhh--h---------HHHHhhhhhhhcc
Confidence 46699999999864321111 111111123455568899999999998765321 1 1278999999999
Q ss_pred HHcCCCCCCceEEEEechhHHHHHHHHhhCCC-----------------eeEEEEEcCCcCCcccccc------hhhhhc
Q 008873 404 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-----------------VFQCAVSGAPVTSWDGYDT------FYTEKY 460 (550)
Q Consensus 404 ~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~------~~~~~~ 460 (550)
.++. +..+|+|+|+|+||.+++.++...++ ...+.+...+..++..... .+....
T Consensus 98 ~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (263)
T d1vkha_ 98 VKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLA 175 (263)
T ss_dssp HHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHHHH
T ss_pred cccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhhcc
Confidence 8875 66799999999999999998875432 3466666666665432211 111111
Q ss_pred cCCCCCCccccccCC------hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCC
Q 008873 461 MGLPSEDPVGYEYSS------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPR 530 (550)
Q Consensus 461 ~g~~~~~~~~~~~~~------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~ 530 (550)
++. ....+.... ....+.++.+|+|++||++|++||++++.+++++|++.+++++++++++++|...
T Consensus 176 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~~~~H~~~ 248 (263)
T d1vkha_ 176 FPD---GIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDV 248 (263)
T ss_dssp CTT---CGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGGG
T ss_pred ccc---ccccccccccccCccccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEECCCCchhh
Confidence 111 111121111 1234667789999999999999999999999999999999999999999999753
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.83 E-value=9.3e-20 Score=169.60 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=142.3
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
++++.||.+|++..+.|++ .|+||++||.+.+.. .|...+..|+++||.|+++|+||+|.+.....
T Consensus 2 ~i~~~dG~~l~y~~~G~~~-------~~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~s~~~~~ 67 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRD-------GLPVVFHHGWPLSAD-------DWDNQMLFFLSHGYRVIAHDRRGHGRSDQPST 67 (275)
T ss_dssp EEECTTSCEEEEEEESCTT-------SCEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS
T ss_pred EEEecCCCEEEEEEecCCC-------CCeEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 5788999999999998653 256788999876543 34556788889999999999999997753211
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEech-hHHHHHHHHhhCCCeeEEEEEcCCcCCcccc--------
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSY-GGYLSAITLARFPDVFQCAVSGAPVTSWDGY-------- 452 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~-GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~-------- 452 (550)
....+++.+.+..+.+.- +.+++.++|+|+ ||.++..++.++|++++.+++.++.......
T Consensus 68 --------~~~~~~~~~~~~~~l~~l--~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~ 137 (275)
T d1a88a_ 68 --------GHDMDTYAADVAALTEAL--DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGL 137 (275)
T ss_dssp --------CCSHHHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSB
T ss_pred --------cccccccccccccccccc--cccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhh
Confidence 122333333333333321 345778888886 6666777788899999999988764321100
Q ss_pred -cch---------------hhh----hccCCCCCC---cc-----------------------ccccCChhhhhhcCCCc
Q 008873 453 -DTF---------------YTE----KYMGLPSED---PV-----------------------GYEYSSVMHHVHKMKGK 486 (550)
Q Consensus 453 -~~~---------------~~~----~~~g~~~~~---~~-----------------------~~~~~~~~~~~~~i~~P 486 (550)
... +.. .+....... .. .+...+....+.++++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 217 (275)
T d1a88a_ 138 PLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVP 217 (275)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSC
T ss_pred hhhhhhhhhhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhccc
Confidence 000 000 000000000 00 00111223346778999
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 487 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+|+++|++|..+|.....+...++ ..++++++++++||.+ ..++.+.+.+.+.+||+
T Consensus 218 ~l~i~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 218 VLVAHGTDDQVVPYADAAPKSAEL---LANATLKSYEGLPHGM-LSTHPEVLNPDLLAFVK 274 (275)
T ss_dssp EEEEEETTCSSSCSTTTHHHHHHH---STTEEEEEETTCCTTH-HHHCHHHHHHHHHHHHH
T ss_pred cceeecCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHHc
Confidence 999999999999987665555443 4568999999999987 34577889999999996
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.82 E-value=8.7e-20 Score=178.25 Aligned_cols=244 Identities=15% Similarity=0.139 Sum_probs=154.1
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCC-CCCCCCCCceEEEEEcCCCCceeecccccccc--hhHhHHHHhCCcEEEEECCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPD-ESRYGPPPYKTLISVYGGPCVQLVCDSWINTV--DMRAQYLRSKGILVWKLDNRGT 373 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~-~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~--~~~~~~l~~~G~~vv~~d~rG~ 373 (550)
+.|...+++.||..|..+.+... ......++.|+||++||.+.+.. .|.... ..++..|+++||.|+++|+||+
T Consensus 26 ~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~---~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~ 102 (377)
T d1k8qa_ 26 PAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASAT---NWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp CCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGG---GGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchh---HHhhcCccchHHHHHHHCCCEEEEEcCCCC
Confidence 56888999999988877755321 11122356789999999776643 342221 2357899999999999999999
Q ss_pred CCCchhhHHHH-hhccC-----CCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCee---EEEEEcC
Q 008873 374 ARRGLKFEASI-KHNCG-----RIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVF---QCAVSGA 444 (550)
Q Consensus 374 g~~~~~~~~~~-~~~~~-----~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~---~~~v~~~ 444 (550)
|.+...-.... ..... .....|+.++++++.++. ..+++.++||||||.+++.++..+|+.+ ..++..+
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~--g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~~~~~~ 180 (377)
T d1k8qa_ 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHc--CCCCEEEEEecchHHHHHHHHHhhhhhhhhceeEeecc
Confidence 98754211000 00000 112567888999987763 2368999999999999999999988754 3333333
Q ss_pred CcCCcccccc--------------------------hhhh---------------------hccCCC--CCCcc------
Q 008873 445 PVTSWDGYDT--------------------------FYTE---------------------KYMGLP--SEDPV------ 469 (550)
Q Consensus 445 ~~~~~~~~~~--------------------------~~~~---------------------~~~g~~--~~~~~------ 469 (550)
|......... .... ...+.. ..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (377)
T d1k8qa_ 181 PVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYL 260 (377)
T ss_dssp CCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHH
T ss_pred ccccccchhhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcccccHHHhhhhh
Confidence 3322110000 0000 000000 00000
Q ss_pred -------------------------cc-------------ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHH
Q 008873 470 -------------------------GY-------------EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALV 511 (550)
Q Consensus 470 -------------------------~~-------------~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 511 (550)
.+ ....+...+.++++|+|+++|++|..++++...++.+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~~~~~~~l~~~l- 339 (377)
T d1k8qa_ 261 SHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKL- 339 (377)
T ss_dssp TTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTC-
T ss_pred hcccccchHHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccCHHHHHHHHHHC-
Confidence 00 000112235778999999999999999999888776655
Q ss_pred HcCCCeEEEEcCCCCCc--CCCCCcHHHHHHHHHHHHHH
Q 008873 512 AARKPYEILIFPDERHM--PRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 512 ~~~~~~~~~~~p~~~H~--~~~~~~~~~~~~~~~~fl~~ 548 (550)
...+++.++|++||. +...+..++++..|++||++
T Consensus 340 --p~~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 340 --PNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp --TTEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred --CCCeEEEEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 233578889999996 23556788999999999985
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.4e-19 Score=161.91 Aligned_cols=193 Identities=15% Similarity=-0.003 Sum_probs=123.9
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC------CCchhhHHHHhhcc-CCCchHHH--
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA------RRGLKFEASIKHNC-GRIDAEDQ-- 396 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g------~~~~~~~~~~~~~~-~~~~~~D~-- 396 (550)
+..++||++||.+.... .+......+...++.+++++-+... ..+..|........ ...+..++
T Consensus 19 ~~~~~VI~lHG~G~~~~-------~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~ 91 (229)
T d1fj2a_ 19 KATAAVIFLHGLGDTGH-------GWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQ 91 (229)
T ss_dssp CCSEEEEEECCSSSCHH-------HHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHH-------HHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHH
Confidence 34578999999654422 1222234455678999998754211 00111110000000 01112222
Q ss_pred -HHHHHHHHH---cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccc
Q 008873 397 -LTGAEWLIK---QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYE 472 (550)
Q Consensus 397 -~~~~~~l~~---~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 472 (550)
.+.++.+.+ +..+|.+||+|+|+|+||.+++.++.++|++|+++++.++...... .+. .
T Consensus 92 ~~~~l~~li~~~~~~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~--------~~~--~------- 154 (229)
T d1fj2a_ 92 AAENIKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA--------SFP--Q------- 154 (229)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG--------GSC--S-------
T ss_pred HHHHHHHHhhhhhhcCCCccceeeeecccchHHHHHHHHhhccccCccccccccccccc--------ccc--c-------
Confidence 222222222 2358999999999999999999999999999999999887432110 000 0
Q ss_pred cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHc--CCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 473 YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA--RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 473 ~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~--~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
.+ ....+.++|+|++||++|.+||++.+.+.++.|++. +.++++++|++.+|.+. .+.++.+.+||+++|
T Consensus 155 --~~-~~~~~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~wL~~~L 226 (229)
T d1fj2a_ 155 --GP-IGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQEMMDVKQFIDKLL 226 (229)
T ss_dssp --SC-CCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHHHHHHHHHHHHHS
T ss_pred --cc-cccccccCceeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HHHHHHHHHHHHhHC
Confidence 00 011223579999999999999999999999999884 56899999999999873 244678999999986
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.82 E-value=4.4e-19 Score=165.83 Aligned_cols=225 Identities=12% Similarity=0.037 Sum_probs=139.6
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchh
Q 008873 300 IVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 379 (550)
Q Consensus 300 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~ 379 (550)
+..+++ ++..+++...-+++ .|+||++||.+........ |......|+ .||.|+++|.||+|.+...
T Consensus 6 ~~~~~~-~~~~~h~~~~G~~~-------~p~ivllHG~~~~~~~~~~----~~~~~~~L~-~~~~vi~~D~~G~G~S~~~ 72 (281)
T d1c4xa_ 6 EKRFPS-GTLASHALVAGDPQ-------SPAVVLLHGAGPGAHAASN----WRPIIPDLA-ENFFVVAPDLIGFGQSEYP 72 (281)
T ss_dssp EEEECC-TTSCEEEEEESCTT-------SCEEEEECCCSTTCCHHHH----HGGGHHHHH-TTSEEEEECCTTSTTSCCC
T ss_pred EEEEcc-CCEEEEEEEEecCC-------CCEEEEECCCCCCCcHHHH----HHHHHHHHh-CCCEEEEEeCCCCcccccc
Confidence 344443 45778877765432 3899999996554321112 333456665 4899999999999987532
Q ss_pred hHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc------
Q 008873 380 FEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------ 453 (550)
Q Consensus 380 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~------ 453 (550)
....... .....+..+.+..+.++- ..+++.++||||||.+++.++.++|++++++++.++........
T Consensus 73 ~~~~~~~---~~~~~~~~~~i~~~i~~~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~ 147 (281)
T d1c4xa_ 73 ETYPGHI---MSWVGMRVEQILGLMNHF--GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELAR 147 (281)
T ss_dssp SSCCSSH---HHHHHHHHHHHHHHHHHH--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHH
T ss_pred ccccccc---hhhHHHhhhhcccccccc--ccccceeccccccccccccccccccccccceEEeccccCccccchhHHHH
Confidence 1100000 001222222222222221 23589999999999999999999999999999988753221100
Q ss_pred --------c--hhh---hhccCCCCCCc-------------------------------cccccCChhhhhhcCCCcEEE
Q 008873 454 --------T--FYT---EKYMGLPSEDP-------------------------------VGYEYSSVMHHVHKMKGKLLL 489 (550)
Q Consensus 454 --------~--~~~---~~~~g~~~~~~-------------------------------~~~~~~~~~~~~~~i~~P~li 489 (550)
. .+. ..+...+.... ...........+.++++|+|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~li 227 (281)
T d1c4xa_ 148 LLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLV 227 (281)
T ss_dssp HHTGGGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEE
T ss_pred HHHhhhhcccchhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccceEE
Confidence 0 000 00011111000 000112223456778999999
Q ss_pred EecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 490 VHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 490 i~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
++|++|..+|++.+..+.+.+ .+.+++++|++||.. ..++.+.+.+.+++||+
T Consensus 228 i~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 228 FHGRQDRIVPLDTSLYLTKHL----KHAELVVLDRCGHWA-QLERWDAMGPMLMEHFR 280 (281)
T ss_dssp EEETTCSSSCTHHHHHHHHHC----SSEEEEEESSCCSCH-HHHSHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCHHHHHHHHHHC----CCCEEEEECCCCCch-HHhCHHHHHHHHHHHhC
Confidence 999999999998887776654 467899999999987 34667889999999986
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.81 E-value=4.2e-19 Score=164.86 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=143.0
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
..+|..+++..+- ++ |.||++||.+........| ......| +.||.|+++|.||+|.+.....
T Consensus 9 ~~~G~~~~Y~~~G-------~G--~pvvllHG~~~~~~~~~~~----~~~~~~l-~~~~~vi~~Dl~G~G~S~~~~~--- 71 (271)
T d1uk8a_ 9 LAAGVLTNYHDVG-------EG--QPVILIHGSGPGVSAYANW----RLTIPAL-SKFYRVIAPDMVGFGFTDRPEN--- 71 (271)
T ss_dssp EETTEEEEEEEEC-------CS--SEEEEECCCSTTCCHHHHH----TTTHHHH-TTTSEEEEECCTTSTTSCCCTT---
T ss_pred EECCEEEEEEEEe-------eC--CeEEEECCCCCCccHHHHH----HHHHHHH-hCCCEEEEEeCCCCCCcccccc---
Confidence 4488888877552 12 4567899976543211222 2234555 4699999999999998753211
Q ss_pred hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch---------
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF--------- 455 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------- 455 (550)
.....++....+..+.++- +.+++.++||||||.+++.++.++|++++++|+.++..........
T Consensus 72 ----~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~ 145 (271)
T d1uk8a_ 72 ----YNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTP 145 (271)
T ss_dssp ----CCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCS
T ss_pred ----ccccccccchhhhhhhhhh--cCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccc
Confidence 1223566666666666653 4568999999999999999999999999999987765321100000
Q ss_pred -------hhhhc----------------------------cCCCCCCccc-c-ccCChhhhhhcCCCcEEEEecCCCCCC
Q 008873 456 -------YTEKY----------------------------MGLPSEDPVG-Y-EYSSVMHHVHKMKGKLLLVHGMIDENV 498 (550)
Q Consensus 456 -------~~~~~----------------------------~g~~~~~~~~-~-~~~~~~~~~~~i~~P~lii~G~~D~~v 498 (550)
..... .......... + ........+.++++|+|+++|+.|..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 225 (271)
T d1uk8a_ 146 SIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVV 225 (271)
T ss_dssp CHHHHHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSS
T ss_pred hhHHHHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEecCCCCCc
Confidence 00000 0000000000 0 011223457788999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 499 HFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 499 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
|+..+..+.+.+ .+.++.++|++||.+ ..++..++.+.+.+||++
T Consensus 226 ~~~~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 226 PLSSSLRLGELI----DRAQLHVFGRCGHWT-QIEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp CHHHHHHHHHHC----TTEEEEEESSCCSCH-HHHTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhC----CCCEEEEECCCCCch-HHHCHHHHHHHHHHHHhc
Confidence 999888776654 467999999999986 446778899999999986
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.2e-20 Score=175.09 Aligned_cols=211 Identities=14% Similarity=0.083 Sum_probs=144.0
Q ss_pred CCCCeEEEEEcCCC-cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC
Q 008873 295 LEPPDIVQIQANDG-TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 373 (550)
Q Consensus 295 ~~~~~~~~~~~~~g-~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~ 373 (550)
..+.+.++|.+.|| .++.+++++|.+.. ..+++|+|+++||++....... ....+..+.++++||++++++.
T Consensus 10 ~~~~~~~~~~s~dg~~~~~~~v~~P~~~~-~~~~yPvi~~lhG~~~~~~~~~------~~~~~~~~~~~~~vV~v~~~~~ 82 (265)
T d2gzsa1 10 FYHFSATSFDSVDGTRHYRVWTAVPNTTA-PASGYPILYMLDGNAVMDRLDD------ELLKQLSEKTPPVIVAVGYQTN 82 (265)
T ss_dssp SEEEEEEEEECTTSSCEEEEEEEEESSCC-CTTCEEEEEESSHHHHHHHCCH------HHHHHHTTSCCCEEEEEEESSS
T ss_pred cceeEEEEEEcCCCCEEEEEEEEcCCCCC-CCCCceEEEEecCcchhhhHHH------HHHHHHHhcCCCeEEEecCCCC
Confidence 44678899999998 58999999999874 3478999999999765433211 1123455678999999999988
Q ss_pred CCCchhhHHHHhhcc-----------------CC-CchH--HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC
Q 008873 374 ARRGLKFEASIKHNC-----------------GR-IDAE--DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF 433 (550)
Q Consensus 374 g~~~~~~~~~~~~~~-----------------~~-~~~~--D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~ 433 (550)
...+..........+ +. .... ...+++.++.++..+|+++++|+|+||||+++++++.+
T Consensus 83 ~~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~- 161 (265)
T d2gzsa1 83 LPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS- 161 (265)
T ss_dssp SSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-
T ss_pred CcCcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-
Confidence 665443222111000 00 0011 12234555666667899999999999999999998875
Q ss_pred CCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCC--------CCCCChHHHHH
Q 008873 434 PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMI--------DENVHFRHTAR 505 (550)
Q Consensus 434 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~--------D~~v~~~~~~~ 505 (550)
++.|.++++.+|...|... ..+...++.........|+++.+|+. |..+++.++.+
T Consensus 162 ~~~f~~~~a~s~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~ 225 (265)
T d2gzsa1 162 SSYFRSYYSASPSLGRGYD----------------ALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHT 225 (265)
T ss_dssp CSSCSEEEEESGGGSTTHH----------------HHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHHHHH
T ss_pred CcccCEEEEECCcccccch----------------hhhhccccccccccCCCcEEEEcCCcccccccccccchhHHHHHH
Confidence 5677788888886544211 11111222233444556788888766 77788999999
Q ss_pred HHHHHHHcCCCeEEEEcCCCCCcC
Q 008873 506 LINALVAARKPYEILIFPDERHMP 529 (550)
Q Consensus 506 ~~~~l~~~~~~~~~~~~p~~~H~~ 529 (550)
++++|+++|+++++.+||+++|+.
T Consensus 226 l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 226 TLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp HHHHHHHTTCCEEEEECTTCCHHH
T ss_pred HHHHHHHCCCCEEEEEcCCCCcch
Confidence 999999999999999999999974
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.81 E-value=1.7e-19 Score=167.23 Aligned_cols=217 Identities=21% Similarity=0.248 Sum_probs=143.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
+|.+.||.+|++..+- ++ |.||++||.+++.. .|....+.|+++||.|+++|+||+|.+.....
T Consensus 2 ~f~~~dG~~l~y~~~G-------~g--~~vv~lHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~ 65 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDWG-------SG--KPVLFSHGWLLDAD-------MWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWT 65 (271)
T ss_dssp EEECTTSCEEEEEEES-------SS--SEEEEECCTTCCGG-------GGHHHHHHHHTTTCEEEEECCTTSTTSCCCSS
T ss_pred EEEeECCeEEEEEEEc-------CC--CeEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 5778899999876552 12 45678999876543 34556788999999999999999997753211
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHH-HHHhhCCCeeEEEEEcCCcCCccccc-------
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSA-ITLARFPDVFQCAVSGAPVTSWDGYD------- 453 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~-~~~~~~~~~~~~~v~~~~~~~~~~~~------- 453 (550)
....+++...+..+.+.- +.+++.++|||+||.+++ .++.++|++++.++..++........
T Consensus 66 --------~~~~~~~~~~~~~~~~~~--~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~ 135 (271)
T d1va4a_ 66 --------GNDYDTFADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGV 135 (271)
T ss_dssp --------CCSHHHHHHHHHHHHHHH--TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSB
T ss_pred --------ccccccccccceeeeeec--CCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhh
Confidence 223445555444444432 456889999999887665 45666799999999887654321000
Q ss_pred ------ch--------------hhhhccCCC--CCC----------------c-------cccccCChhhhhhcCCCcEE
Q 008873 454 ------TF--------------YTEKYMGLP--SED----------------P-------VGYEYSSVMHHVHKMKGKLL 488 (550)
Q Consensus 454 ------~~--------------~~~~~~g~~--~~~----------------~-------~~~~~~~~~~~~~~i~~P~l 488 (550)
.. +.....+.. ... . ..+...+....+.++++|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl 215 (271)
T d1va4a_ 136 PLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTL 215 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEE
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhccccee
Confidence 00 000000000 000 0 00111223345678899999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 489 LVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 489 ii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+++|+.|..+|+....++.+++ ....+++++|++||.+ ..++.+.+.+.+.+||++
T Consensus 216 ~i~g~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 216 VIHGDGDQIVPFETTGKVAAEL---IKGAELKVYKDAPHGF-AVTHAQQLNEDLLAFLKR 271 (271)
T ss_dssp EEEETTCSSSCGGGTHHHHHHH---STTCEEEEETTCCTTH-HHHTHHHHHHHHHHHHTC
T ss_pred ecccCCCCCCCHHHHHHHHHHh---CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHHCc
Confidence 9999999999998888877655 3457899999999986 335678889999999974
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.81 E-value=6.3e-19 Score=163.66 Aligned_cols=216 Identities=19% Similarity=0.228 Sum_probs=141.1
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhH
Q 008873 302 QIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFE 381 (550)
Q Consensus 302 ~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~ 381 (550)
+|++.||.+|++...- +-|.||++||.+.+.. .|......|.++||.|+++|.||+|.+....
T Consensus 2 ~f~~~dG~~i~y~~~G---------~g~pvvllHG~~~~~~-------~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~- 64 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDWG---------SGQPIVFSHGWPLNAD-------SWESQMIFLAAQGYRVIAHDRRGHGRSSQPW- 64 (273)
T ss_dssp EEECTTSCEEEEEEES---------CSSEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCS-
T ss_pred EEEeeCCcEEEEEEEC---------CCCeEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEechhcCcccccc-
Confidence 5888999999887652 1145678999876543 3455678888999999999999999875321
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHH-HHhhCCCeeEEEEEcCCcCCcccc--------
Q 008873 382 ASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAI-TLARFPDVFQCAVSGAPVTSWDGY-------- 452 (550)
Q Consensus 382 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~-~~~~~~~~~~~~v~~~~~~~~~~~-------- 452 (550)
......+..+.+..+.+.- +..+..++|+|+||.+++. ++..+|+++++++..++.......
T Consensus 65 -------~~~~~~~~~~~~~~~l~~l--~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~ 135 (273)
T d1a8sa_ 65 -------SGNDMDTYADDLAQLIEHL--DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGL 135 (273)
T ss_dssp -------SCCSHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSB
T ss_pred -------ccccccchHHHHHHHHHhc--CccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccc
Confidence 1123445555544444432 3457889999998765554 555679999888887654322100
Q ss_pred -----cc-----------hhh----hhccCC--CCC--Cc----------------------cccccCChhhhhhcCCCc
Q 008873 453 -----DT-----------FYT----EKYMGL--PSE--DP----------------------VGYEYSSVMHHVHKMKGK 486 (550)
Q Consensus 453 -----~~-----------~~~----~~~~g~--~~~--~~----------------------~~~~~~~~~~~~~~i~~P 486 (550)
.. ... ...... +.. .. ..+...+....++++++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P 215 (273)
T d1a8sa_ 136 PMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVP 215 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccc
Confidence 00 000 000000 000 00 001112334556788999
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 487 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
+|+++|++|..+|.+.+..+.+++ ...++++++|++||.+ ..++.+.+.+.+.+||+
T Consensus 216 vlii~g~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 216 TLVVHGDADQVVPIEASGIASAAL---VKGSTLKIYSGAPHGL-TDTHKDQLNADLLAFIK 272 (273)
T ss_dssp EEEEEETTCSSSCSTTTHHHHHHH---STTCEEEEETTCCSCH-HHHTHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCCHHHHHHHHHHh---CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHcC
Confidence 999999999999988777776655 3467899999999987 44677888999999986
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.2e-19 Score=171.36 Aligned_cols=223 Identities=10% Similarity=0.011 Sum_probs=145.5
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.....++..||.+|++..+- .-|+||++||.+.+.. .|...++.|+++||.|+++|.||+|.+.
T Consensus 11 ~~~~~v~~~~g~~i~y~~~G---------~gp~vlllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~D~~G~G~S~ 74 (322)
T d1zd3a2 11 MSHGYVTVKPRVRLHFVELG---------SGPAVCLCHGFPESWY-------SWRYQIPALAQAGYRVLAMDMKGYGESS 74 (322)
T ss_dssp SEEEEEEEETTEEEEEEEEC---------CSSEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEEECTTSTTSC
T ss_pred CceeEEEECCCCEEEEEEEc---------CCCeEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEeccccccccc
Confidence 34455677789888887652 1278899999877643 3445688899999999999999998775
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcc--cc---
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWD--GY--- 452 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~--~~--- 452 (550)
...... ....++....+..+.++ ++.+++.++||||||.+++.+|.++|+++++++..++..... ..
T Consensus 75 ~~~~~~------~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 146 (322)
T d1zd3a2 75 APPEIE------EYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPL 146 (322)
T ss_dssp CCSCGG------GGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCCSSSCHH
T ss_pred cccccc------cccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcccccccccccchh
Confidence 321111 11245555555555443 145689999999999999999999999999999876432110 00
Q ss_pred ------c-----c------h-----------hhhhccCCC-----------------CCC---c--c-------------
Q 008873 453 ------D-----T------F-----------YTEKYMGLP-----------------SED---P--V------------- 469 (550)
Q Consensus 453 ------~-----~------~-----------~~~~~~g~~-----------------~~~---~--~------------- 469 (550)
. . . .....+... ... . .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (322)
T d1zd3a2 147 ESIKANPVFDYQLYFQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQ 226 (322)
T ss_dssp HHHHTCGGGHHHHHTTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHH
T ss_pred hhhhccchhhhHHhhhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHHHHHHHH
Confidence 0 0 0 000000000 000 0 0
Q ss_pred ccc------------------cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC
Q 008873 470 GYE------------------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR 531 (550)
Q Consensus 470 ~~~------------------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~ 531 (550)
.+. .........++++|+|+++|++|..++++....+.+. -.+.++++++++||.+ .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~----~~~~~~~~i~~~gH~~-~ 301 (322)
T d1zd3a2 227 QFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDW----IPHLKRGHIEDCGHWT-Q 301 (322)
T ss_dssp HHHHHTTHHHHHTTSCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGT----CTTCEEEEETTCCSCH-H
T ss_pred HHhhcccccccccccccccccccchhhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHh----CCCCEEEEECCCCCch-H
Confidence 000 0001122356789999999999999998876665443 3567899999999986 4
Q ss_pred CCcHHHHHHHHHHHHHHh
Q 008873 532 HRDRIYMEERIWEFIERT 549 (550)
Q Consensus 532 ~~~~~~~~~~~~~fl~~~ 549 (550)
.++.+++.+.+.+||+++
T Consensus 302 ~e~p~~v~~~i~~FL~~~ 319 (322)
T d1zd3a2 302 MDKPTEVNQILIKWLDSD 319 (322)
T ss_dssp HHSHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHhhc
Confidence 466778899999999875
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=6e-19 Score=165.53 Aligned_cols=240 Identities=13% Similarity=0.062 Sum_probs=160.0
Q ss_pred CCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
+++.+++.+. .|.+++..++.|. +++|||+++||+++.... ..|... ....+.+++.|++|++++..+.+.
T Consensus 8 ~v~~~~~~s~~~~r~~~~~v~~p~------~~~Pvl~llhG~~~~~d~-~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 79 (288)
T d1sfra_ 8 PVEYLQVPSPSMGRDIKVQFQSGG------ANSPALYLLDGLRAQDDF-SGWDIN-TPAFEWYDQSGLSVVMPVGGQSSF 79 (288)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS------TTBCEEEEECCTTCCSSS-CHHHHH-CCHHHHHTTSSCEEEEECCCTTCT
T ss_pred EEEEEEEECCCCCcEEEEEEeCCC------CCceEEEEcCCCCCCCcc-hhhhhh-ccHHHHHHhCCCEEEEeccCCCCC
Confidence 4677788764 6788888888763 578999999997654321 123211 123577888999999999887654
Q ss_pred CchhhHHHH-hhccCCCchH--HHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 376 RGLKFEASI-KHNCGRIDAE--DQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 376 ~~~~~~~~~-~~~~~~~~~~--D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
....+.... .........+ -+.+.+.+|.++..+|++|++|+|+||||++|+.++.++|++|+++++.+|..++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~ 159 (288)
T d1sfra_ 80 YSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQA 159 (288)
T ss_dssp TCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTST
T ss_pred CccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCccccccc
Confidence 433211110 0000011112 2456678888887789999999999999999999999999999999999998876543
Q ss_pred cchh-------------hhhccCCCCCCccccccCChhhhhhcC---CCcEEEEecCCCCCCCh--------------HH
Q 008873 453 DTFY-------------TEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHF--------------RH 502 (550)
Q Consensus 453 ~~~~-------------~~~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~--------------~~ 502 (550)
.... .....+.+ +...+...+|...+++. +.++++.+|..|..++. .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~ 237 (288)
T d1sfra_ 160 MGPTLIGLAMGDAGGYKASDMWGPK--EDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTS 237 (288)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCST--TSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhcccccHhhhcCCc--chhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHH
Confidence 2110 00111221 12344455665555443 46899999999987763 57
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCC-CCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 503 TARLINALVAARKPYEILIFPDE-RHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 503 ~~~~~~~l~~~~~~~~~~~~p~~-~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+.++.++|.+.|++..+..++++ +|.+.. ....+...+.||.+.
T Consensus 238 ~~~l~~~l~~~g~~~~~~~~~~~G~H~w~~---w~~~l~~~l~~l~~a 282 (288)
T d1sfra_ 238 NIKFQDAYNAGGGHNGVFDFPDSGTHSWEY---WGAQLNAMKPDLQRA 282 (288)
T ss_dssp HHHHHHHHHHTTCCSEEEECCSCCCSSHHH---HHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEEECCCCccChhH---HHHHHHHHHHHHHHh
Confidence 78899999999999999999865 697632 233344556666654
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.80 E-value=1.5e-19 Score=165.39 Aligned_cols=227 Identities=11% Similarity=-0.011 Sum_probs=147.5
Q ss_pred CCCCCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC----cEEEE
Q 008873 293 LQLEPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG----ILVWK 367 (550)
Q Consensus 293 ~~~~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G----~~vv~ 367 (550)
....+++++.+.+. .|.++.+++|.|.+.. ++++|+||++||++..... ........+.+.| ++++.
T Consensus 10 ~~~~~~~~~~~~S~~lg~~~~~~v~~P~~~~--~~~~Pvvv~lhG~~~~~~~------~~~~~l~~l~~~~~~~~~i~v~ 81 (246)
T d3c8da2 10 APEIPAKEIIWKSERLKNSRRVWIFTTGDVT--AEERPLAVLLDGEFWAQSM------PVWPVLTSLTHRQQLPPAVYVL 81 (246)
T ss_dssp CCSSCCEEEEEEETTTTEEEEEEEEEC-------CCCCEEEESSHHHHHHTS------CCHHHHHHHHHTTSSCSCEEEE
T ss_pred CCCCCcEEEEEECCCCCCEEEEEEEECCCCC--CCCCCEEEEeCCcchhccC------cHHHHHHHHHHhCCCCceEEee
Confidence 34557788899885 4788999999998863 3689999999997543211 1122245555554 55666
Q ss_pred ECCCCCCCCchhhHHHHhhccCCCc-hHHHH-HHHHHHHHc--CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEc
Q 008873 368 LDNRGTARRGLKFEASIKHNCGRID-AEDQL-TGAEWLIKQ--GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSG 443 (550)
Q Consensus 368 ~d~rG~g~~~~~~~~~~~~~~~~~~-~~D~~-~~~~~l~~~--~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~ 443 (550)
++....... ... ...... .+.+. +.+.++.+. ..+|+++++|+|+||||+++++++.++|++|+++++.
T Consensus 82 ~~~~~~~~~----~~~---~~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~ 154 (246)
T d3c8da2 82 IDAIDTTHR----AHE---LPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQ 154 (246)
T ss_dssp ECCCSHHHH----HHH---SSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEE
T ss_pred ccccccccc----ccc---cCccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcC
Confidence 654322110 100 001101 11111 222233332 3478899999999999999999999999999999999
Q ss_pred CCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcC
Q 008873 444 APVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP 523 (550)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p 523 (550)
+|..++..... .....+....+.....+...|+++.+|+.|..+ ..++++|+++|+++|.++++.++|
T Consensus 155 sg~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~ 222 (246)
T d3c8da2 155 SGSYWWPHRGG-----------QQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVD 222 (246)
T ss_dssp SCCTTTTCTTS-----------SSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEES
T ss_pred CcccccccCCc-----------cchHHHHHHhhhhhhhccCCCeEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeC
Confidence 99876543211 111222233344455666789999999999876 578899999999999999999999
Q ss_pred CCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 524 DERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 524 ~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+ +|.+. .....+...+.||-+.|
T Consensus 223 G-gH~~~---~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 223 G-GHDAL---CWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp C-CSCHH---HHHHHHHHHHHHHHGGG
T ss_pred C-CCChH---HHHHHHHHHHHHHHHhh
Confidence 8 79763 34555666777776554
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.80 E-value=4.5e-19 Score=157.73 Aligned_cols=187 Identities=15% Similarity=0.143 Sum_probs=130.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhh----------
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKF---------- 380 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~---------- 380 (550)
+++.+..+.. +++|+||++||.++... .+..+.+.|+. ++.+++++.+.....+..+
T Consensus 11 ~~~~~~~~~~-----~~~p~vv~lHG~g~~~~-------~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
T d3b5ea1 11 FPYRLLGAGK-----ESRECLFLLHGSGVDET-------TLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFE 77 (209)
T ss_dssp SCEEEESTTS-----SCCCEEEEECCTTBCTT-------TTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEEC
T ss_pred ceeEecCCCC-----CCCCEEEEEcCCCCCHH-------HHHHHHHHhcc-CcEEEeeccCcCcccCccccccCCccccc
Confidence 4455554432 56799999999765421 23334555554 7888888765321111100
Q ss_pred HHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhc
Q 008873 381 EASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKY 460 (550)
Q Consensus 381 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 460 (550)
..... ....++.+.++.+.++..+|.+||+|+|+|+||++++.++.++|++|+++++.+|......
T Consensus 78 ~~~~~-----~~~~~l~~~l~~~~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~~--------- 143 (209)
T d3b5ea1 78 QKSIL-----AETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH--------- 143 (209)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS---------
T ss_pred hhhHH-----HHHHHHHHHHHHHHHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCcccccc---------
Confidence 01110 1145566677777777778999999999999999999999999999999999987532110
Q ss_pred cCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHH
Q 008873 461 MGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEE 540 (550)
Q Consensus 461 ~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~ 540 (550)
.......++|++++||+.|+.++ ..+.++.+.|++.|.++++.+|++ +|.+.. ...+
T Consensus 144 ----------------~~~~~~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~~-----~~~~ 200 (209)
T d3b5ea1 144 ----------------VPATDLAGIRTLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIPS-GHDIGD-----PDAA 200 (209)
T ss_dssp ----------------CCCCCCTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEESC-CSCCCH-----HHHH
T ss_pred ----------------ccccccccchheeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEECC-CCCCCH-----HHHH
Confidence 01122235799999999999987 667889999999999999999998 798842 3346
Q ss_pred HHHHHHH
Q 008873 541 RIWEFIE 547 (550)
Q Consensus 541 ~~~~fl~ 547 (550)
.+.+||.
T Consensus 201 ~~~~wl~ 207 (209)
T d3b5ea1 201 IVRQWLA 207 (209)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 6788885
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.80 E-value=7.2e-19 Score=166.97 Aligned_cols=219 Identities=14% Similarity=0.088 Sum_probs=142.6
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHH
Q 008873 305 ANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASI 384 (550)
Q Consensus 305 ~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~ 384 (550)
..+|..+++.-..+.+ ..|+||++||.+.+.. .|......|+++||.|+++|.||+|.+......
T Consensus 30 ~~~g~~~~y~~~G~~~------~~p~llllHG~~~~~~-------~~~~~~~~l~~~~~~vi~~Dl~G~G~S~~~~~~-- 94 (310)
T d1b6ga_ 30 GYPGLRAHYLDEGNSD------AEDVFLCLHGEPTWSY-------LYRKMIPVFAESGARVIAPDFFGFGKSDKPVDE-- 94 (310)
T ss_dssp TCTTCEEEEEEEECTT------CSCEEEECCCTTCCGG-------GGTTTHHHHHHTTCEEEEECCTTSTTSCEESCG--
T ss_pred CCCCEEEEEEEecCCC------CCCEEEEECCCCCchH-------HHHHHHHHhhccCceEEEeeecCcccccccccc--
Confidence 3478889887775543 3489999999876543 334457888999999999999999988642111
Q ss_pred hhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc-----------
Q 008873 385 KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD----------- 453 (550)
Q Consensus 385 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~----------- 453 (550)
......++.+.+..+.++- +.+++.|+||||||.+++.+|.++|++++++|+.++........
T Consensus 95 ----~~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~~~~~~~~~~~ 168 (310)
T d1b6ga_ 95 ----EDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQP 168 (310)
T ss_dssp ----GGCCHHHHHHHHHHHHHHH--TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSS
T ss_pred ----ccccccccccchhhhhhhc--cccccccccceecccccccchhhhccccceEEEEcCccCCCcccchhHHHHhhcc
Confidence 1123555565555555542 34689999999999999999999999999999887643211000
Q ss_pred --c-----------------hhhhhccC-----------CCCCCccc------c----ccCC----------hhhhhhcC
Q 008873 454 --T-----------------FYTEKYMG-----------LPSEDPVG------Y----EYSS----------VMHHVHKM 483 (550)
Q Consensus 454 --~-----------------~~~~~~~g-----------~~~~~~~~------~----~~~~----------~~~~~~~i 483 (550)
. .+...... .+..+... + .... ......++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (310)
T d1b6ga_ 169 ADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDW 248 (310)
T ss_dssp TTTHHHHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhhhhhHHhhccc
Confidence 0 00000000 00000000 0 0000 01123567
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 484 KGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 484 ~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++|+|+++|++|..+++.....+.+.+ ....++++++++||.+ ..+..+.+.+.+.+||+.
T Consensus 249 ~~P~l~i~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~GH~~-~~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 249 NGQTFMAIGMKDKLLGPDVMYPMKALI---NGCPEPLEIADAGHFV-QEFGEQVAREALKHFAET 309 (310)
T ss_dssp CSEEEEEEETTCSSSSHHHHHHHHHHS---TTCCCCEEETTCCSCG-GGGHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhc---CCCccEEEECCCcCch-hhhCHHHHHHHHHHHHhC
Confidence 899999999999999988877776654 2224678899999976 456667778888888874
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.80 E-value=3.8e-19 Score=164.82 Aligned_cols=215 Identities=12% Similarity=0.014 Sum_probs=137.5
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.||.++++...- ++ |.||++||.++....... |......| ++||.|+++|.||+|.+.....
T Consensus 9 ~dg~~l~y~~~G-------~g--~~vvllHG~~~~~~~~~~----~~~~~~~l-~~~~~v~~~D~~G~G~S~~~~~---- 70 (268)
T d1j1ia_ 9 AGGVETRYLEAG-------KG--QPVILIHGGGAGAESEGN----WRNVIPIL-ARHYRVIAMDMLGFGKTAKPDI---- 70 (268)
T ss_dssp ETTEEEEEEEEC-------CS--SEEEEECCCSTTCCHHHH----HTTTHHHH-TTTSEEEEECCTTSTTSCCCSS----
T ss_pred ECCEEEEEEEEc-------CC--CeEEEECCCCCCccHHHH----HHHHHHHH-hcCCEEEEEcccccccccCCcc----
Confidence 489888876432 12 457789997654321112 23334555 5699999999999997753211
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-----------
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT----------- 454 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------- 454 (550)
....++....+..+.+.-.+ ..++.++|||+||.+++.++.++|++++++|+.+|.........
T Consensus 71 ----~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~ 145 (268)
T d1j1ia_ 71 ----EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFT 145 (268)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSC
T ss_pred ----ccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhh
Confidence 12234444444444433222 25789999999999999999999999999998876432110000
Q ss_pred -----hhhhhccCCCCCCc----------------------------cccccCChhhhhhcCCCcEEEEecCCCCCCChH
Q 008873 455 -----FYTEKYMGLPSEDP----------------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFR 501 (550)
Q Consensus 455 -----~~~~~~~g~~~~~~----------------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~ 501 (550)
.............. ...........+.++++|+|+++|++|..+|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~ 225 (268)
T d1j1ia_ 146 REGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVE 225 (268)
T ss_dssp HHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHH
T ss_pred hhhhHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEeCCCCCCCHH
Confidence 00000000000000 000111223456778999999999999999998
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 502 HTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.+.++.+.+ .+++++++|++||.+ ..++...+.+.+.+||.+
T Consensus 226 ~~~~~~~~~----~~~~~~~~~~~gH~~-~~e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 226 TAYKFLDLI----DDSWGYIIPHCGHWA-MIEHPEDFANATLSFLSL 267 (268)
T ss_dssp HHHHHHHHC----TTEEEEEESSCCSCH-HHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CCCEEEEECCCCCch-HHhCHHHHHHHHHHHHcC
Confidence 887776654 568999999999986 345678899999999976
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.80 E-value=8.7e-19 Score=163.06 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=127.1
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|......|+++||.|+++|+||+|.+..... ...++++.+.+..+.++-
T Consensus 24 ~~ivllHG~~~~~~-------~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~--------~~~~~~~~~dl~~~l~~l- 87 (277)
T d1brta_ 24 QPVVLIHGFPLSGH-------SWERQSAALLDAGYRVITYDRRGFGQSSQPTT--------GYDYDTFAADLNTVLETL- 87 (277)
T ss_dssp SEEEEECCTTCCGG-------GGHHHHHHHHHTTCEEEEECCTTSTTSCCCSS--------CCSHHHHHHHHHHHHHHH-
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEEeCCCCCccccccc--------ccchhhhhhhhhhhhhcc-
Confidence 56788999876643 34455778889999999999999998753211 122444444444433331
Q ss_pred CCCCceEEEEechhH-HHHHHHHhhCCCeeEEEEEcCCcCCccccc---------c----------------hhh---hh
Q 008873 409 AKVGHIGLYGWSYGG-YLSAITLARFPDVFQCAVSGAPVTSWDGYD---------T----------------FYT---EK 459 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG-~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---------~----------------~~~---~~ 459 (550)
+.+++.++|||||| .++..++..+|++++++|..+++....... . .+. ..
T Consensus 88 -~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (277)
T d1brta_ 88 -DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFND 166 (277)
T ss_dssp -TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -CcccccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhcccc
Confidence 34689999999996 555666777899999999887653221000 0 000 00
Q ss_pred ccCC----CCC-Cc---------------------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHc
Q 008873 460 YMGL----PSE-DP---------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAA 513 (550)
Q Consensus 460 ~~g~----~~~-~~---------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~ 513 (550)
.... ... .. ......+....+.++++|+|+++|++|..++++...+.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~--- 243 (277)
T d1brta_ 167 FYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKA--- 243 (277)
T ss_dssp HTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHH---
T ss_pred ccccchhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcCHHHHHHHHHHh---
Confidence 0000 000 00 000001122346778899999999999999987665554433
Q ss_pred CCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 514 RKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 514 ~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
..+.+++++|++||.+ ..++...+.+.+.+||++
T Consensus 244 ~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 244 LPSAEYVEVEGAPHGL-LWTHAEEVNTALLAFLAK 277 (277)
T ss_dssp CTTSEEEEETTCCTTH-HHHTHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHHCc
Confidence 4567999999999987 346778889999999975
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.79 E-value=1.3e-18 Score=159.35 Aligned_cols=201 Identities=15% Similarity=0.053 Sum_probs=134.7
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+++.. .|...+..|+++||.|+++|+||+|.+..... ......+....+..+.....
T Consensus 3 ~~vvllHG~~~~~~-------~w~~~~~~L~~~g~~vi~~Dl~G~G~S~~~~~-------~~~~~~~~~~~~~~~~~~~~ 68 (258)
T d1xkla_ 3 KHFVLVHGACHGGW-------SWYKLKPLLEAAGHKVTALDLAASGTDLRKIE-------ELRTLYDYTLPLMELMESLS 68 (258)
T ss_dssp CEEEEECCTTCCGG-------GGTTHHHHHHHTTCEEEECCCTTSTTCCCCGG-------GCCSHHHHHHHHHHHHHTSC
T ss_pred CcEEEECCCCCCHH-------HHHHHHHHHHhCCCEEEEecCCCCCCCCCCCC-------CCcchHHHHHHHhhhhhccc
Confidence 46777999766543 34557889999999999999999998754211 11234555544444444432
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch--hh---h------------hccCCCC------
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF--YT---E------------KYMGLPS------ 465 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~---~------------~~~g~~~------ 465 (550)
...++.++|||+||.+++.++.++|++++.++..++.......... .. . .......
T Consensus 69 -~~~~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T d1xkla_ 69 -ADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSM 147 (258)
T ss_dssp -SSSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEE
T ss_pred -ccccccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccc
Confidence 2357889999999999999999999999999988765322110000 00 0 0000000
Q ss_pred --------------CC-----------------ccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 466 --------------ED-----------------PVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 466 --------------~~-----------------~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
.. ...............+++|+++++|++|..+|++....+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~---- 223 (258)
T d1xkla_ 148 FFGPKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNI---- 223 (258)
T ss_dssp ECCHHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHH----
T ss_pred cccHHHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCCHHHHHHHHHHC----
Confidence 00 0000111122234556789999999999999999888887765
Q ss_pred CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 515 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+.++++++++||.. ..++.+++.+.+.+|+++|
T Consensus 224 ~~~~~~~i~~~gH~~-~~e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 224 GVTEAIEIKGADHMA-MLCEPQKLCASLLEIAHKY 257 (258)
T ss_dssp CCSEEEEETTCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCch-HHhCHHHHHHHHHHHHHhc
Confidence 457899999999986 4467888999999999886
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=8e-19 Score=153.26 Aligned_cols=180 Identities=10% Similarity=0.034 Sum_probs=121.0
Q ss_pred EEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCC
Q 008873 330 TLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLA 409 (550)
Q Consensus 330 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 409 (550)
-||++||..++.. ..| +..+++.|+++||.|+++|++|+|... .+|....++.+.+ .
T Consensus 3 ~V~~vHG~~~~~~--~~~---~~~l~~~L~~~G~~v~~~d~p~~~~~~---------------~~~~~~~l~~~~~---~ 59 (186)
T d1uxoa_ 3 QVYIIHGYRASST--NHW---FPWLKKRLLADGVQADILNMPNPLQPR---------------LEDWLDTLSLYQH---T 59 (186)
T ss_dssp EEEEECCTTCCTT--STT---HHHHHHHHHHTTCEEEEECCSCTTSCC---------------HHHHHHHHHTTGG---G
T ss_pred EEEEECCCCCCcc--hhH---HHHHHHHHHhCCCEEEEeccCCCCcch---------------HHHHHHHHHHHHh---c
Confidence 4788999655422 122 344678899999999999999887432 3344444333332 3
Q ss_pred CCCceEEEEechhHHHHHHHHhhCCCe--eEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcE
Q 008873 410 KVGHIGLYGWSYGGYLSAITLARFPDV--FQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKL 487 (550)
Q Consensus 410 d~~~i~i~G~S~GG~~a~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~ 487 (550)
...++.|+||||||++++.++.+++.. +.++++.++........... ..+ .....+.....++.+|+
T Consensus 60 ~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~p~ 128 (186)
T d1uxoa_ 60 LHENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQML-DEF----------TQGSFDHQKIIESAKHR 128 (186)
T ss_dssp CCTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGGG-GGG----------TCSCCCHHHHHHHEEEE
T ss_pred cCCCcEEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhhhhh-hhh----------hcccccccccccCCCCE
Confidence 457899999999999999999988763 45555555543322111100 000 11112233445567899
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCC--CCcHHHHHHHHHHHHHH
Q 008873 488 LLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRR--HRDRIYMEERIWEFIER 548 (550)
Q Consensus 488 lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~--~~~~~~~~~~~~~fl~~ 548 (550)
|++||++|++||++++.++++++ +.+++++|+++|.... ......+.+.+.+||.+
T Consensus 129 lvi~g~~D~~vp~~~~~~l~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~~ 186 (186)
T d1uxoa_ 129 AVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 186 (186)
T ss_dssp EEEEETTCSSSCHHHHHHHHHHT-----TCEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCCHHHHHHHHHHc-----CCEEEEeCCCCCcCccccCcccHHHHHHHHHHHcC
Confidence 99999999999999999998876 3689999999997632 23445788888888864
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.78 E-value=2.4e-19 Score=168.37 Aligned_cols=213 Identities=14% Similarity=0.065 Sum_probs=142.1
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHh
Q 008873 306 NDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIK 385 (550)
Q Consensus 306 ~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~ 385 (550)
.+|.+|++..+.+.+ .|+||++||.+.+.. .|...++.|+ .||.|+++|.||+|.+...-
T Consensus 14 ~~g~~i~y~~~G~~~-------~p~lvllHG~~~~~~-------~~~~~~~~L~-~~~~vi~~d~~G~G~S~~~~----- 73 (291)
T d1bn7a_ 14 VLGERMHYVDVGPRD-------GTPVLFLHGNPTSSY-------LWRNIIPHVA-PSHRCIAPDLIGMGKSDKPD----- 73 (291)
T ss_dssp ETTEEEEEEEESCSS-------SSCEEEECCTTCCGG-------GGTTTHHHHT-TTSCEEEECCTTSTTSCCCS-----
T ss_pred ECCEEEEEEEeCCCC-------CCeEEEECCCCCCHH-------HHHHHHHHHh-cCCEEEEEeCCCCccccccc-----
Confidence 378899988876543 256888999876643 2333466674 59999999999999875321
Q ss_pred hccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-----------
Q 008873 386 HNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT----------- 454 (550)
Q Consensus 386 ~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------- 454 (550)
.....+++.+.+..+.++- +.+++.|+||||||.+++.++.++|++++++++.++.........
T Consensus 74 ---~~~~~~~~~~~l~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 148 (291)
T d1bn7a_ 74 ---LDYFFDDHVRYLDAFIEAL--GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQA 148 (291)
T ss_dssp ---CCCCHHHHHHHHHHHHHHT--TCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCHHHHHHHHH
T ss_pred ---cccchhHHHHHHhhhhhhh--ccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhhhhhhHHHH
Confidence 1233556666666555542 446899999999999999999999999999988765432211000
Q ss_pred ---------------hhhh----hccCCCCCCc--cccc---------------------c----------CChhhhhhc
Q 008873 455 ---------------FYTE----KYMGLPSEDP--VGYE---------------------Y----------SSVMHHVHK 482 (550)
Q Consensus 455 ---------------~~~~----~~~g~~~~~~--~~~~---------------------~----------~~~~~~~~~ 482 (550)
.+.. .....+.... +.+. . ........+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (291)
T d1bn7a_ 149 FRTADVGRELIIDQNAFIEGVLPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQ 228 (291)
T ss_dssp HTSTTHHHHHHTTSCHHHHTHHHHTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhhhhhhhhHHhhhhhhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhc
Confidence 0000 0000000000 0000 0 001123567
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 483 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 483 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+++|+|+++|++|..+|+....++.+.+ .+.+++++++++|.+ ..+..+.+.+.+.+||+.
T Consensus 229 i~~P~lii~G~~D~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~-~~e~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 229 SPVPKLLFWGTPGVLIPPAEAARLAESL----PNCKTVDIGPGLHYL-QEDNPDLIGSEIARWLPG 289 (291)
T ss_dssp CCSCEEEEEEEECSSSCHHHHHHHHHHS----TTEEEEEEEEESSCG-GGTCHHHHHHHHHHHSGG
T ss_pred CCCCEEEEEeCCCCCcCHHHHHHHHHHC----CCCEEEEECCCCCch-HHhCHHHHHHHHHHHHHh
Confidence 8899999999999999999888777655 467899999999976 446678888999999864
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.78 E-value=2e-18 Score=158.23 Aligned_cols=199 Identities=14% Similarity=-0.027 Sum_probs=131.4
Q ss_pred EEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCC
Q 008873 331 LISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAK 410 (550)
Q Consensus 331 vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 410 (550)
.|++||.+++.. .|...+..|+++||.|+++|.||+|.+..... .....++..+.+..+..+. ..
T Consensus 5 ~vliHG~~~~~~-------~w~~~~~~L~~~g~~Via~Dl~G~G~S~~~~~-------~~~~~~~~~~~l~~~~~~~-~~ 69 (256)
T d3c70a1 5 FVLIHTICHGAW-------IWHKLKPLLEALGHKVTALDLAASGVDPRQIE-------EIGSFDEYSEPLLTFLEAL-PP 69 (256)
T ss_dssp EEEECCTTCCGG-------GGTTHHHHHHHTTCEEEEECCTTSTTCSCCGG-------GCCSHHHHTHHHHHHHHHS-CT
T ss_pred EEEeCCCCCCHH-------HHHHHHHHHHhCCCEEEEEcCCCCCCCCCCCC-------CCCCHHHHHHHhhhhhhhh-cc
Confidence 477999876643 34557889999999999999999998764321 1123455555554443331 13
Q ss_pred CCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccch--h--------------------------------
Q 008873 411 VGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTF--Y-------------------------------- 456 (550)
Q Consensus 411 ~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~-------------------------------- 456 (550)
.+++.|+||||||.+++.++..+|++++++|..++.......... .
T Consensus 70 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
T d3c70a1 70 GEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGF 149 (256)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHHGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCH
T ss_pred ccceeecccchHHHHHHHHhhcCchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhh
Confidence 568999999999999999999999999999988765322110000 0
Q ss_pred ---hhhccCCCC---------------CCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 457 ---TEKYMGLPS---------------EDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 457 ---~~~~~g~~~---------------~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
......... .................+++|+++++|++|..+|++....+.+.+ .+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----p~~~ 225 (256)
T d3c70a1 150 TLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENY----KPDK 225 (256)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHS----CCSE
T ss_pred hhhhhhhhhhcchhhHHHhhhhhhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCCHHHHHHHHHHC----CCCE
Confidence 000000000 000000111112233445689999999999999988777766543 5678
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+++++++||.. ..++.+++.+.+.+|++++
T Consensus 226 ~~~i~~agH~~-~~e~P~~~~~~l~~~~~~~ 255 (256)
T d3c70a1 226 VYKVEGGDHKL-QLTKTKEIAEILQEVADTY 255 (256)
T ss_dssp EEECCSCCSCH-HHHSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCch-HHhCHHHHHHHHHHHHHhc
Confidence 99999999986 4467788889999998875
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.77 E-value=5.5e-18 Score=161.09 Aligned_cols=128 Identities=18% Similarity=0.167 Sum_probs=91.7
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+.+.-.++..||.+|++..+-.++ -|.||++||++++.. .| .. ...+.+.||.|+++|.||+|.|
T Consensus 10 P~~~~~i~~~dg~~i~y~~~G~~~-------g~pvvllHG~~g~~~---~~----~~-~~~~l~~~~~Vi~~D~rG~G~S 74 (313)
T d1azwa_ 10 PYQQGSLKVDDRHTLYFEQCGNPH-------GKPVVMLHGGPGGGC---ND----KM-RRFHDPAKYRIVLFDQRGSGRS 74 (313)
T ss_dssp CSEEEEEECSSSCEEEEEEEECTT-------SEEEEEECSTTTTCC---CG----GG-GGGSCTTTEEEEEECCTTSTTS
T ss_pred CCCCCEEEeCCCcEEEEEEecCCC-------CCEEEEECCCCCCcc---ch----HH-HhHHhhcCCEEEEEeccccCCC
Confidence 347788888999999988875322 256778999887643 22 21 2334467999999999999988
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
.... ......+.++.+.+..+.++- ..+++.|+|||+||.+++.++.++|++++.++..++..
T Consensus 75 ~~~~------~~~~~~~~~~~~dl~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 75 TPHA------DLVDNTTWDLVADIERLRTHL--GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp BSTT------CCTTCCHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred Cccc------cccchhHHHHHHHHHHHHHhh--ccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 5321 112233556666566555542 34689999999999999999999999999999887654
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.77 E-value=1e-18 Score=163.41 Aligned_cols=202 Identities=15% Similarity=0.155 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|+||++||.+.+.. .|...+.. ...+.+.||.|+++|.||+|.+........... ...+|+.+.++.+
T Consensus 31 ~~ivllHG~~~~~~---~~~~~~~~-l~~~~~~g~~v~~~D~~G~G~S~~~~~~~~~~~---~~~~~i~~li~~l----- 98 (283)
T d2rhwa1 31 ETVIMLHGGGPGAG---GWSNYYRN-VGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGL---VNARAVKGLMDAL----- 98 (283)
T ss_dssp SEEEEECCCSTTCC---HHHHHTTT-HHHHHHTTCEEEEECCTTSTTSCCCCCSSCHHH---HHHHHHHHHHHHH-----
T ss_pred CeEEEECCCCCChh---HHHHHHHH-HHHHHHCCCEEEEEeCCCCcccccccccccccc---hhhhhcccccccc-----
Confidence 67888999766543 23222222 234568999999999999997753221100000 0133444444443
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc-cc----c-------h-----------hhhhccCCCC
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG-YD----T-------F-----------YTEKYMGLPS 465 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~-~~----~-------~-----------~~~~~~g~~~ 465 (550)
+.+++.++|||+||.+++.++.++|++++++|+.+|...... .. . . ..........
T Consensus 99 -~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (283)
T d2rhwa1 99 -DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQS 177 (283)
T ss_dssp -TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGG
T ss_pred -cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhcccc
Confidence 346899999999999999999999999999999876432110 00 0 0 0000000000
Q ss_pred -CCc--------------------------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 466 -EDP--------------------------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 466 -~~~--------------------------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
... ......+....+.++++|+|+++|+.|..+|++.+.++.+.+ .+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~----~~~~ 253 (283)
T d2rhwa1 178 LITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI----DDAR 253 (283)
T ss_dssp GCCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHS----SSEE
T ss_pred cCcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhC----CCCE
Confidence 000 001112234456778999999999999999999988887765 4679
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+++++++||.+ ..++.+++.+.+.+||++
T Consensus 254 ~~~i~~~gH~~-~~e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 254 LHVFSKCGHWA-QWEHADEFNRLVIDFLRH 282 (283)
T ss_dssp EEEESSCCSCH-HHHTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCch-HHhCHHHHHHHHHHHHhC
Confidence 99999999976 345678889999999986
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.77 E-value=5.6e-18 Score=158.91 Aligned_cols=222 Identities=12% Similarity=0.028 Sum_probs=139.4
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCc
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRG 377 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~ 377 (550)
.+...++. +|.+|++.... .-|+||++||.+.+.. .|......|++ +|.|+++|+||+|.+.
T Consensus 8 ~~~~~~~~-~~~~l~y~~~G---------~gp~vv~lHG~~~~~~-------~~~~~~~~l~~-~~~vi~~D~~G~G~s~ 69 (293)
T d1ehya_ 8 FKHYEVQL-PDVKIHYVREG---------AGPTLLLLHGWPGFWW-------EWSKVIGPLAE-HYDVIVPDLRGFGDSE 69 (293)
T ss_dssp SCEEEEEC-SSCEEEEEEEE---------CSSEEEEECCSSCCGG-------GGHHHHHHHHT-TSEEEEECCTTSTTSC
T ss_pred CcceEEEE-CCEEEEEEEEC---------CCCeEEEECCCCCCHH-------HHHHHHHHHhc-CCEEEEecCCcccCCc
Confidence 35666776 56788876542 1267889999876542 34445667754 8999999999999765
Q ss_pred hhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc------
Q 008873 378 LKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------ 451 (550)
Q Consensus 378 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~------ 451 (550)
...... ......+++...+..+.++- +.+++.|+||||||.+++.++.++|+++.++++.+|......
T Consensus 70 ~~~~~~----~~~~~~~~~a~~~~~~~~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 143 (293)
T d1ehya_ 70 KPDLND----LSKYSLDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGL 143 (293)
T ss_dssp CCCTTC----GGGGCHHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-------
T ss_pred cccccc----cccccchhhhhHHHhhhhhc--CccccccccccccccchhcccccCccccceeeeeeccCccccchhhhh
Confidence 321110 11122455555555554432 346899999999999999999999999999999887532100
Q ss_pred --c-cc-----------------------hhhhhcc---CC-C-CCCccc--------------------cc-------c
Q 008873 452 --Y-DT-----------------------FYTEKYM---GL-P-SEDPVG--------------------YE-------Y 473 (550)
Q Consensus 452 --~-~~-----------------------~~~~~~~---g~-~-~~~~~~--------------------~~-------~ 473 (550)
. .. .+....+ .. + ....+. |. .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (293)
T d1ehya_ 144 GHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAA 223 (293)
T ss_dssp ----CCHHHHHTTCHHHHHHHTSCHHHHHHHHHHHHHHTSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCC
T ss_pred hhhhhhhhhhhhccchhhhhhccchhHHHHHHHHhhhhcccccccccHHHHHhhhhccccchhhhhhhhhhhhccccchh
Confidence 0 00 0000000 00 0 000000 00 0
Q ss_pred CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 474 SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 474 ~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
.........+++|+|+++|++|..+|+....+..+++ ..+.++.+++++||.+ ..+..+.+.+.|.+||+
T Consensus 224 ~~~~~~~~~~~~Pvlii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~-~~e~Pe~~~~~I~~Ffr 293 (293)
T d1ehya_ 224 LWTDLDHTMSDLPVTMIWGLGDTCVPYAPLIEFVPKY---YSNYTMETIEDCGHFL-MVEKPEIAIDRIKTAFR 293 (293)
T ss_dssp CCCTGGGSCBCSCEEEEEECCSSCCTTHHHHHHHHHH---BSSEEEEEETTCCSCH-HHHCHHHHHHHHHHHCC
T ss_pred hhhhhhhhccCCceEEEEeCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCch-HHHCHHHHHHHHHHhhC
Confidence 0001112346789999999999999988776665544 4578999999999976 44566777888888863
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.76 E-value=2.9e-18 Score=159.73 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|...+..|.++||.|+++|.||+|.+.... ....++++...+..+.+.
T Consensus 24 ~~illlHG~~~~~~-------~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~--------~~~~~~~~~~di~~~i~~-- 86 (279)
T d1hkha_ 24 QPVVLIHGYPLDGH-------SWERQTRELLAQGYRVITYDRRGFGGSSKVN--------TGYDYDTFAADLHTVLET-- 86 (279)
T ss_dssp EEEEEECCTTCCGG-------GGHHHHHHHHHTTEEEEEECCTTSTTSCCCS--------SCCSHHHHHHHHHHHHHH--
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHHHCCCEEEEEechhhCCccccc--------cccchhhhhhhhhhhhhh--
Confidence 67888999776643 3444577788899999999999999875321 112344444444444333
Q ss_pred CCCCceEEEEechhH-HHHHHHHhhCCCeeEEEEEcCCcCCccccc------------------------chhhh---h-
Q 008873 409 AKVGHIGLYGWSYGG-YLSAITLARFPDVFQCAVSGAPVTSWDGYD------------------------TFYTE---K- 459 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG-~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~------------------------~~~~~---~- 459 (550)
++.+++.|+|||||| .++..++..+|++++++++.++........ ..+.. .
T Consensus 87 l~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (279)
T d1hkha_ 87 LDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNF 166 (279)
T ss_dssp HTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCcCccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 134689999999996 566666777899999999877643211000 00000 0
Q ss_pred -----ccCCCCC---------------Cccccc-------c-CChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHH
Q 008873 460 -----YMGLPSE---------------DPVGYE-------Y-SSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALV 511 (550)
Q Consensus 460 -----~~g~~~~---------------~~~~~~-------~-~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 511 (550)
....... ....+. . ...+..+.++++|+|+++|++|..+|.....+.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~- 245 (279)
T d1hkha_ 167 YNLDENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQA- 245 (279)
T ss_dssp HTHHHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHH-
T ss_pred cccchhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccCHHHHHHHHHHh-
Confidence 0000000 000000 0 0122345667899999999999999876443333322
Q ss_pred HcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 512 AARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 512 ~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
-.+.+++++|++||.+ ..++..++.+.|.+||++
T Consensus 246 --~p~~~~~~i~~~gH~~-~~e~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 246 --VPEADYVEVEGAPHGL-LWTHADEVNAALKTFLAK 279 (279)
T ss_dssp --CTTSEEEEETTCCTTH-HHHTHHHHHHHHHHHHHC
T ss_pred --CCCCEEEEECCCCCch-HHhCHHHHHHHHHHHHCc
Confidence 3467899999999986 345677888999999975
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.76 E-value=1.3e-18 Score=154.16 Aligned_cols=183 Identities=16% Similarity=0.116 Sum_probs=125.3
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
++.|+||++||+++... . |....+.++ .++.|+.++.+..++....+. .....+..+..|+...++.+..
T Consensus 15 ~~~P~vi~lHG~G~~~~---~----~~~~~~~l~-~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 84 (203)
T d2r8ba1 15 AGAPLFVLLHGTGGDEN---Q----FFDFGARLL-PQATILSPVGDVSEHGAARFF--RRTGEGVYDMVDLERATGKMAD 84 (203)
T ss_dssp TTSCEEEEECCTTCCHH---H----HHHHHHHHS-TTSEEEEECCSEEETTEEESS--CBCGGGCBCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHH---H----HHHHHHHhc-cCCeEEEeccccccccccccc--cccCccccchhHHHHHHHHHHH
Confidence 56799999999665432 2 222344444 468888887664322111000 0011122234444444333322
Q ss_pred -----cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhh
Q 008873 406 -----QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHV 480 (550)
Q Consensus 406 -----~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 480 (550)
...+|.++|+++|+|+||.+++.++..+|+.+.++++.+|....... ...
T Consensus 85 ~l~~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~-------------------------~~~ 139 (203)
T d2r8ba1 85 FIKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPK-------------------------ISP 139 (203)
T ss_dssp HHHHHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCC-------------------------CCC
T ss_pred HHHHhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccc-------------------------ccc
Confidence 12357899999999999999999999999999999998876432100 011
Q ss_pred hcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 481 HKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 481 ~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.....|++++||++|.+||++++.+++++|++.|.++++++|++ +|.+.. +..+.+.+||.+|
T Consensus 140 ~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~~-----~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 140 AKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIRS-----GEIDAVRGFLAAY 202 (203)
T ss_dssp CCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEESS-CSSCCH-----HHHHHHHHHHGGG
T ss_pred ccccchhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEECC-CCcCCH-----HHHHHHHHHHHhc
Confidence 22356999999999999999999999999999999999999997 799732 3467899999875
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3.4e-16 Score=144.89 Aligned_cols=214 Identities=16% Similarity=0.136 Sum_probs=148.3
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
....|||||++|||++..... ..+++++..++..++++..
T Consensus 42 ~sP~wSPDGk~IAf~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~------- 81 (269)
T d2hqsa1 42 MSPAWSPDGSKLAYVTFESGR---------------------------------SALVIQTLANGAVRQVASF------- 81 (269)
T ss_dssp EEEEECTTSSEEEEEECTTSS---------------------------------CEEEEEETTTCCEEEEECC-------
T ss_pred eeeEECCCCCEEEEEEeeccC---------------------------------cceeeeecccCceeEEeee-------
Confidence 367899999999998765332 3568899999998887543
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccC
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT 164 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 164 (550)
......+.|||||+.+++...+.. ...+........+............. +.. .+.++.+++.+.+.
T Consensus 82 --~~~~~~~~~spdg~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~ 148 (269)
T d2hqsa1 82 --PRHNGAPAFSPDGSKLAFALSKTG-SLNLYVMDLASGQIRQVTDGRSNNTE-------PTW---FPDSQNLAFTSDQA 148 (269)
T ss_dssp --SSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTTCCEEECCCCSSCEEE-------EEE---CTTSSEEEEEECTT
T ss_pred --ecccccceecCCCCeeeEeeecCC-ccceeecccccccceeeeeccccccc-------ccc---ccccccceeccccc
Confidence 344566899999999988866543 34566655555554433322111110 100 12344477788888
Q ss_pred CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC-ceEE
Q 008873 165 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK-GKHV 243 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~-~~~~ 243 (550)
|..+|++.+++++...+++........+. |++||+.+++.....+. ..++.++. .+. . .+++... ....
T Consensus 149 g~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~spdg~~~~~~~~~~~~--~~i~~~~~--~~~----~-~~~~~~~~~~~~ 218 (269)
T d2hqsa1 149 GRPQVYKVNINGGAPQRITWEGSQNQDAD-VSSDGKFMVMVSSNGGQ--QHIAKQDL--ATG----G-VQVLSSTFLDET 218 (269)
T ss_dssp SSCEEEEEETTSSCCEECCCSSSEEEEEE-ECTTSSEEEEEEECSSC--EEEEEEET--TTC----C-EEECCCSSSCEE
T ss_pred CCceEeeeecccccceeeecccccccccc-cccccceeEEEeecCCc--eeeeEeec--ccc----c-ceEeecCccccc
Confidence 99999999999988888888776666554 99999999999887654 78888887 332 2 3444433 4567
Q ss_pred EEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccCC
Q 008873 244 AVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYEQ 283 (550)
Q Consensus 244 ~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~~ 283 (550)
+.|||||++|+|+... ....+|+++++..+ ..++|+..
T Consensus 219 p~~SPDG~~i~f~s~~-~~~~~l~~~~~dg~-~~~~lt~~ 256 (269)
T d2hqsa1 219 PSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGR-FKARLPAT 256 (269)
T ss_dssp EEECTTSSEEEEEEEE-TTEEEEEEEETTSC-CEEECCCS
T ss_pred eEECCCCCEEEEEEcC-CCCcEEEEEECCCC-CEEEEeCC
Confidence 7999999999998654 44568999998544 45667653
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3.7e-18 Score=157.08 Aligned_cols=192 Identities=17% Similarity=0.185 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|.||++||.+.+.. .|...++.|+ .||.|+++|+||+|.+.. .....+.|+.+.+ ...
T Consensus 12 ~~lvllHG~~~~~~-------~~~~~~~~L~-~~~~vi~~D~~G~G~S~~---------~~~~~~~d~~~~~---~~~-- 69 (256)
T d1m33a_ 12 VHLVLLHGWGLNAE-------VWRCIDEELS-SHFTLHLVDLPGFGRSRG---------FGALSLADMAEAV---LQQ-- 69 (256)
T ss_dssp SEEEEECCTTCCGG-------GGGGTHHHHH-TTSEEEEECCTTSTTCCS---------CCCCCHHHHHHHH---HTT--
T ss_pred CeEEEECCCCCCHH-------HHHHHHHHHh-CCCEEEEEeCCCCCCccc---------ccccccccccccc---ccc--
Confidence 56778999766532 2344567775 589999999999997742 1223345544333 322
Q ss_pred CCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc------ccc---------------hhhhhcc-----C
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG------YDT---------------FYTEKYM-----G 462 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~------~~~---------------~~~~~~~-----g 462 (550)
..+++.++||||||.+++.++.++|+.++++++..+...... ... ...++++ .
T Consensus 70 -~~~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
T d1m33a_ 70 -APDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMG 148 (256)
T ss_dssp -SCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred -cccceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhcc
Confidence 246789999999999999999999999999888765432110 000 0000000 0
Q ss_pred -----------------CCCCCc-------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeE
Q 008873 463 -----------------LPSEDP-------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYE 518 (550)
Q Consensus 463 -----------------~~~~~~-------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~ 518 (550)
.+.... ..+...+....++++++|+|+++|++|..+|++....+.+. -.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~l~~~----~~~~~ 224 (256)
T d1m33a_ 149 TETARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKL----WPHSE 224 (256)
T ss_dssp STTHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTT----CTTCE
T ss_pred ccchhhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCCHHHHHHHHHH----CCCCE
Confidence 000000 01111223345678899999999999999998877666543 34678
Q ss_pred EEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 519 ILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 519 ~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
+.+++++||.+ ..++.+++.+.+.+||++
T Consensus 225 ~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 225 SYIFAKAAHAP-FISHPAEFCHLLVALKQR 253 (256)
T ss_dssp EEEETTCCSCH-HHHSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCch-HHHCHHHHHHHHHHHHHH
Confidence 99999999976 446788899999999975
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.74 E-value=4.4e-17 Score=153.65 Aligned_cols=221 Identities=17% Similarity=0.100 Sum_probs=138.6
Q ss_pred CCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC
Q 008873 297 PPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR 376 (550)
Q Consensus 297 ~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~ 376 (550)
+.+.-.+++.||.+|++..+.+++ .|.||++||.+++.. .| ......| ++||.|+++|.||+|.|
T Consensus 10 p~~~~~v~~~dG~~i~y~~~G~~~-------g~pvvllHG~~~~~~---~w----~~~~~~l-~~~~~vi~~D~rG~G~S 74 (313)
T d1wm1a_ 10 AYDSGWLDTGDGHRIYWELSGNPN-------GKPAVFIHGGPGGGI---SP----HHRQLFD-PERYKVLLFDQRGCGRS 74 (313)
T ss_dssp CSEEEEEECSSSCEEEEEEEECTT-------SEEEEEECCTTTCCC---CG----GGGGGSC-TTTEEEEEECCTTSTTC
T ss_pred CCcCCEEEeCCCcEEEEEEecCCC-------CCeEEEECCCCCccc---ch----HHHHHHh-hcCCEEEEEeCCCcccc
Confidence 446666888899999998876532 256778999887643 33 2233333 56999999999999987
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc----
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY---- 452 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~---- 452 (550)
..... .......+..+.+..+..+- +..++.++|||+||.++..++..+|++++..+..++.......
T Consensus 75 ~~~~~------~~~~~~~~~~~d~~~~~~~~--~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~ 146 (313)
T d1wm1a_ 75 RPHAS------LDNNTTWHLVADIERLREMA--GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWY 146 (313)
T ss_dssp BSTTC------CTTCSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHH
T ss_pred ccccc------ccccchhhHHHHHHhhhhcc--CCCcceeEeeecCCchhhHHHHHHhhhheeeeecccccccccccccc
Confidence 53211 11222444444454544443 4568999999999999999999999999999887654321000
Q ss_pred --------------------c-----ch---------------hh---------hhccCCCCCCccc--c----------
Q 008873 453 --------------------D-----TF---------------YT---------EKYMGLPSEDPVG--Y---------- 471 (550)
Q Consensus 453 --------------------~-----~~---------------~~---------~~~~g~~~~~~~~--~---------- 471 (550)
. .. .. ............. +
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (313)
T d1wm1a_ 147 YQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFA 226 (313)
T ss_dssp HTSSGGGTSHHHHHHHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhHHhhhh
Confidence 0 00 00 0000000000000 0
Q ss_pred ------------ccC---ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHH
Q 008873 472 ------------EYS---SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRI 536 (550)
Q Consensus 472 ------------~~~---~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~ 536 (550)
... ........+++|+|+++|++|..+|+..+.++.+.+ .+.++++++++||.+.. .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~G~~D~~~p~~~~~~l~~~~----p~a~~~~i~~aGH~~~e----P 298 (313)
T d1wm1a_ 227 RIENHYFTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAW----PEAELHIVEGAGHSYDE----P 298 (313)
T ss_dssp HHHHHHHHTGGGCSSTTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHC----TTSEEEEETTCCSSTTS----H
T ss_pred hhhhhhhhhhcccccchhhhhhhhhhCCCCEEEEEECCCCccCHHHHHHHHHHC----CCCEEEEECCCCCCcCC----c
Confidence 000 011223446789999999999999999888887765 45789999999997632 3
Q ss_pred HHHHHHHHHHHH
Q 008873 537 YMEERIWEFIER 548 (550)
Q Consensus 537 ~~~~~~~~fl~~ 548 (550)
+....+++.+++
T Consensus 299 ~~~~~lv~a~~~ 310 (313)
T d1wm1a_ 299 GILHQLMIATDR 310 (313)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444556666554
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.73 E-value=4.6e-17 Score=145.61 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=90.0
Q ss_pred CCCCCCceEEEEechhHHHHHHHHh-hCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCC
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLA-RFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKG 485 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 485 (550)
..+|++||+++|+|+||++++.++. +.+..++++++.++...... ... .......+.
T Consensus 101 ~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~--------------~~~--------~~~~~~~~~ 158 (218)
T d1auoa_ 101 TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG--------------DEL--------ELSASQQRI 158 (218)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCC--------------TTC--------CCCHHHHTC
T ss_pred hCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCcccc--------------ccc--------ccchhccCC
Confidence 4579999999999999999998765 45678899998876422100 000 001122357
Q ss_pred cEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 486 KLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 486 P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
|+|++||+.|.+||++.+.++++.|++.|.+++++.|| .+|.+. .+....+.+||.+.|
T Consensus 159 pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~~~~i~~wl~~~l 217 (218)
T d1auoa_ 159 PALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIGAWLAARL 217 (218)
T ss_dssp CEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998 589873 245678999998865
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.70 E-value=3.3e-16 Score=145.75 Aligned_cols=207 Identities=15% Similarity=0.114 Sum_probs=128.6
Q ss_pred EEEcCC--CCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 7 YWWSLD--SKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 7 ~~wSPd--g~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
+.+||| |++|||++.+ +||++|+++++.++|+..
T Consensus 4 ~~~sPdi~G~~v~f~~~~-------------------------------------dl~~~d~~~g~~~~Lt~~------- 39 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCCD-------------------------------------DLWEHDLKSGSTRKIVSN------- 39 (281)
T ss_dssp CCEEEEEETTEEEEEETT-------------------------------------EEEEEETTTCCEEEEECS-------
T ss_pred cccCCCCCCCEEEEEeCC-------------------------------------cEEEEECCCCCEEEEecC-------
Confidence 457999 9999998432 489999999999999653
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCC--ceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc--EEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQT--KLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG--FIWA 160 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~--~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 160 (550)
......|+|||||+.|+|+..+... ..+||++++.+|+.++|+..... ... . ........|++++ ++|.
T Consensus 40 --~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~-~~~--~--~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 40 --LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK-STG--R--RMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp --SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE-EET--T--EECSEEEEECTTCCEEEEE
T ss_pred --CCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC-ccC--c--cccccccccCCCCCEEEEE
Confidence 4567889999999999998776543 46899999999999998754321 000 0 0000001233433 3332
Q ss_pred EccCC---ccEEEEEeCCCceeeccccc--------------------------------------------------Ce
Q 008873 161 SEKTG---FRHLYLHDINGTCLGPITEG--------------------------------------------------DW 187 (550)
Q Consensus 161 s~~~g---~~~l~~~~~~~~~~~~lT~~--------------------------------------------------~~ 187 (550)
....+ ...++.++.++++.+.++.+ ..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (281)
T d1k32a2 113 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST 192 (281)
T ss_dssp CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred EccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCcc
Confidence 22111 12233333322221111111 00
Q ss_pred EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEE
Q 008873 188 MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRIL 267 (550)
Q Consensus 188 ~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~ 267 (550)
.... ....++.+++.....+. .+||.+++ ++. +.++||.........+||||+.|+|... .+||
T Consensus 193 ~~~~---~~~~~~~~~~~~~~~~~--~~l~~~d~--~g~----~~~~lt~~~~~~~~~~SpDG~~I~f~~~-----~~l~ 256 (281)
T d1k32a2 193 HVSS---PVIVGHRIYFITDIDGF--GQIYSTDL--DGK----DLRKHTSFTDYYPRHLNTDGRRILFSKG-----GSIY 256 (281)
T ss_dssp CCEE---EEEETTEEEEEECTTSS--CEEEEEET--TSC----SCEECCCCCSSCEEEEEESSSCEEEEET-----TEEE
T ss_pred ccce---eeeeccccceecccccc--cceEEEeC--CCC----ceEEeecCCCcccccCcCCCCEEEEEeC-----CEEE
Confidence 0011 12234567777665543 78999998 665 6788887655555679999999998653 3799
Q ss_pred EEEcCCCceeEecc
Q 008873 268 LCSLQDGSLVLPLY 281 (550)
Q Consensus 268 ~~~~~~g~~~~~l~ 281 (550)
++++++|+ .+.|.
T Consensus 257 ~~d~~~g~-~~~i~ 269 (281)
T d1k32a2 257 IFNPDTEK-IEKIE 269 (281)
T ss_dssp EECTTTCC-EEECC
T ss_pred EEECCCCC-EEEec
Confidence 99997776 45554
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=7e-16 Score=142.28 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=141.6
Q ss_pred CCCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCC
Q 008873 296 EPPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTA 374 (550)
Q Consensus 296 ~~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g 374 (550)
.++|.+++.+. .|+.|+..++.|. .|+|+++||.++... ...|.... ...+.++..+++||++|.-...
T Consensus 2 ~~~e~~~v~s~~~~r~~~~~v~~~~--------~pvlylLhG~~g~~~-~~~w~~~~-~~~~~~~~~~~iVV~p~g~~~~ 71 (267)
T d1r88a_ 2 APYENLMVPSPSMGRDIPVAFLAGG--------PHAVYLLDAFNAGPD-VSNWVTAG-NAMNTLAGKGISVVAPAGGAYS 71 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECCS--------SSEEEEECCSSCCSS-SCHHHHTS-CHHHHHTTSSSEEEEECCCTTS
T ss_pred CceEEEEEecccCCceeeEEEECCC--------CCEEEEcCCCCCCCC-cchhhhcc-HHHHHHhhCCeEEEEECCCCCc
Confidence 35788898875 5678998887653 289999999543221 11342222 2357778899999999953222
Q ss_pred CCchhhHHHHhhccCCCchHHHH--HHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccc
Q 008873 375 RRGLKFEASIKHNCGRIDAEDQL--TGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGY 452 (550)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~ 452 (550)
.+ ..+... +....++.+ +.+.++.++..+|++|++|.|+||||++|+.++.++|++|+++++++|..+....
T Consensus 72 ~y-~~~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~ 145 (267)
T d1r88a_ 72 MY-TNWEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNT 145 (267)
T ss_dssp TT-SBCSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSH
T ss_pred CC-cccccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCc
Confidence 11 111100 111222222 3566777777789999999999999999999999999999999999998775432
Q ss_pred cc-----hhhh--------hccCCCCCCccccccCChhhhhhcC---CCcEEEEecCCCCCCCh-----------HHHHH
Q 008873 453 DT-----FYTE--------KYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVHF-----------RHTAR 505 (550)
Q Consensus 453 ~~-----~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~~-----------~~~~~ 505 (550)
.. .... ...+.+ +...+.+.+|...++++ ..++++.+|..|..+.. ..+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~ 223 (267)
T d1r88a_ 146 TTNGAIAAGMQQFGGVDTNGMWGAP--QLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRM 223 (267)
T ss_dssp HHHHHHHHHHHHHHCCCTHHHHCCG--GGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHH
T ss_pred cchhhhhhHHhhhcCCcHhhccCCc--chHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHH
Confidence 10 0000 111211 22345566676665554 46789999999876643 34567
Q ss_pred HHHHHHHcC-CCeEEEEcCCCCCcC
Q 008873 506 LINALVAAR-KPYEILIFPDERHMP 529 (550)
Q Consensus 506 ~~~~l~~~~-~~~~~~~~p~~~H~~ 529 (550)
+.++|++.+ .++.+...++++|.+
T Consensus 224 ~~~~l~~~~g~~~~~~~~~~G~H~W 248 (267)
T d1r88a_ 224 FYNQYRSVGGHNGHFDFPASGDNGW 248 (267)
T ss_dssp HHHHHHHTTCCSEEEECCSSCCSSH
T ss_pred HHHHHHHcCCCcEEEEEcCCCeECh
Confidence 777887765 578888888899976
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.67 E-value=1.6e-16 Score=145.68 Aligned_cols=196 Identities=12% Similarity=0.024 Sum_probs=118.0
Q ss_pred CceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHc
Q 008873 327 PYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQ 406 (550)
Q Consensus 327 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 406 (550)
+.|+||++||.+++.. .|...+..|++.||.|+++|+||+|.+....... ..+...+...+...
T Consensus 15 ~~P~ivllHG~~~~~~-------~~~~~~~~L~~~g~~vi~~Dl~G~G~s~~~~~~~---------~~~~~~~~~~~~~~ 78 (264)
T d1r3da_ 15 RTPLVVLVHGLLGSGA-------DWQPVLSHLARTQCAALTLDLPGHGTNPERHCDN---------FAEAVEMIEQTVQA 78 (264)
T ss_dssp TBCEEEEECCTTCCGG-------GGHHHHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCCCCHH-------HHHHHHHHHHhCCCEEEEEecccccccccccccc---------cchhhhhhhhcccc
Confidence 4589999999776543 3555788898999999999999999775422211 11222222233333
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccccc------------c------------hhhhhc--
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYD------------T------------FYTEKY-- 460 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~------------~------------~~~~~~-- 460 (550)
......++.++|||+||.+++.++.++|+.+..++...+........ . ......
T Consensus 79 ~~~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (264)
T d1r3da_ 79 HVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQ 158 (264)
T ss_dssp TCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTT
T ss_pred cccccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 33456789999999999999999999987655554432221100000 0 000000
Q ss_pred ---cCCCC-------------CCc----------cccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcC
Q 008873 461 ---MGLPS-------------EDP----------VGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAAR 514 (550)
Q Consensus 461 ---~g~~~-------------~~~----------~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~ 514 (550)
..... ... ...........+..+++|+++++|+.|..+ ..+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~-----~~~~~~----- 228 (264)
T d1r3da_ 159 QAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAES----- 228 (264)
T ss_dssp SGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHH-----
T ss_pred hhhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHH-----HHHHhc-----
Confidence 00000 000 000011223456778899999999999532 122211
Q ss_pred CCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 515 KPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 515 ~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
.+.++.++|++||.+ ..++.+.+.+.+.+||+.-
T Consensus 229 ~~~~~~~i~~~gH~~-~~e~P~~~~~~i~~fl~~l 262 (264)
T d1r3da_ 229 SGLSYSQVAQAGHNV-HHEQPQAFAKIVQAMIHSI 262 (264)
T ss_dssp HCSEEEEETTCCSCH-HHHCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCch-HHHCHHHHHHHHHHHHHhc
Confidence 357899999999987 4467788999999999863
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=5.2e-16 Score=143.99 Aligned_cols=245 Identities=14% Similarity=0.068 Sum_probs=150.6
Q ss_pred CCCeEEEEEcC-CCcEEEEEEEcCCCCCC----CCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECC
Q 008873 296 EPPDIVQIQAN-DGTVLYGALYKPDESRY----GPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDN 370 (550)
Q Consensus 296 ~~~~~~~~~~~-~g~~l~~~~~~P~~~~~----~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~ 370 (550)
.+...+++.+. -|.++.+.+|+|++... .++++|||+++||.++... .|.. .....+.+.+.|.+|++++.
T Consensus 12 G~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~---~w~~-~~~~~~~~~~~~~~vv~~~~ 87 (299)
T d1pv1a_ 12 GRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPD---NASE-KAFWQFQADKYGFAIVFPDT 87 (299)
T ss_dssp EEEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHH---HHHH-HSCHHHHHHHHTCEEEECCS
T ss_pred cEEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHH---HHHH-hhhHHHHHHHcCCceecCCC
Confidence 34567778775 57889999999987531 2367999999999766432 3321 11234566778999999874
Q ss_pred CCC--------------CCCchhhHHHHh-hccCCCchHHHH--HHHHHHHHcCC-------CCCCceEEEEechhHHHH
Q 008873 371 RGT--------------ARRGLKFEASIK-HNCGRIDAEDQL--TGAEWLIKQGL-------AKVGHIGLYGWSYGGYLS 426 (550)
Q Consensus 371 rG~--------------g~~~~~~~~~~~-~~~~~~~~~D~~--~~~~~l~~~~~-------~d~~~i~i~G~S~GG~~a 426 (550)
... |+...-+..... ...+...+.|.+ +.+.++.+... .+.++.+|.|+||||+.|
T Consensus 88 ~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gA 167 (299)
T d1pv1a_ 88 SPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGA 167 (299)
T ss_dssp SCCSTTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHH
T ss_pred cccccccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHH
Confidence 221 000000000000 000111122222 23344444322 234689999999999999
Q ss_pred HHHHhh--CCCeeEEEEEcCCcCCcccccc--hhhhhccCCCCCCccccccCChhhhhhcCC----CcEEEEecCCCCCC
Q 008873 427 AITLAR--FPDVFQCAVSGAPVTSWDGYDT--FYTEKYMGLPSEDPVGYEYSSVMHHVHKMK----GKLLLVHGMIDENV 498 (550)
Q Consensus 427 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~----~P~lii~G~~D~~v 498 (550)
+.++.+ +|++|.++++.+|+.++..... .....+.+... ..+...++...+++.+ .++++..|++|...
T Consensus 168 l~~al~~~~p~~f~~~~s~s~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D~~~ 244 (299)
T d1pv1a_ 168 ICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEK---AQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp HHHHHHTGGGTCCSEEEEESCCCCSTTSHHHHHHHHHHSCC-------CGGGCHHHHGGGSCCCTTCCEEEECCTTCTTT
T ss_pred HHHHHHhcCCCceEEEeeccCcCCcccccchhhhhhhhcccch---hhhhhcCHHHHHHHhhccCCcceeEecCCCCcch
Confidence 999975 4899999999999887654321 11223334322 3344555555554433 47888899999876
Q ss_pred ChH-HHHHHHHHHHHcCCC--eEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHhC
Q 008873 499 HFR-HTARLINALVAARKP--YEILIFPDERHMPRRHRDRIYMEERIWEFIERTL 550 (550)
Q Consensus 499 ~~~-~~~~~~~~l~~~~~~--~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~l 550 (550)
+.. ....+.+++++++.+ +++...|+.+|.+.. ....++..++|+.++|
T Consensus 245 ~~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~y---W~~~i~~~l~f~a~~l 296 (299)
T d1pv1a_ 245 EEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNL 296 (299)
T ss_dssp TTTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHHH---HHHHHHHHHHHHHHHT
T ss_pred hhhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHHH---HHHHHHHHHHHHHHhc
Confidence 643 357788888888765 677778888898633 4455677789998876
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.67 E-value=8.4e-17 Score=149.52 Aligned_cols=217 Identities=12% Similarity=0.054 Sum_probs=130.7
Q ss_pred CCCeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccc--cchhHhHHH----HhCCcEEEEEC
Q 008873 296 EPPDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN--TVDMRAQYL----RSKGILVWKLD 369 (550)
Q Consensus 296 ~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~~~~~l----~~~G~~vv~~d 369 (550)
.+++.+++++.+| +..+++|+|++.+ ..+++|+|+++||+++... +.|.. ........+ ...++.|+.++
T Consensus 25 g~v~~~~~~~~~~-~r~~~vylP~~y~-~~k~yPvl~~lhG~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (273)
T d1wb4a1 25 GRIVKETYTGING-TKSLNVYLPYGYD-PNKKYNIFYLMHGGGENEN--TIFSNDVKLQNILDHAIMNGELEPLIVVTPT 100 (273)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECTTCC-TTSCCEEEEEECCTTCCTT--STTSTTTCHHHHHHHHHHHTSSCCEEEEECC
T ss_pred CeEEEEEEecCCC-eEEEEEEeCCCCC-CCCCceEEEEEeCCCCCcc--hhhhhccchhHHHHhhhhhhccCCceeeccc
Confidence 5678899999887 4689999999874 3478999999999876532 12211 111112222 23479999999
Q ss_pred CCCCCCCchhhHHHHhhccCC-CchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC
Q 008873 370 NRGTARRGLKFEASIKHNCGR-IDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS 448 (550)
Q Consensus 370 ~rG~g~~~~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~ 448 (550)
.++....+..+.......... .+..++...++.+..+..+|+++++|+|+|+||++|+.++.++|++|+++++.+|...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~ 180 (273)
T d1wb4a1 101 FNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYW 180 (273)
T ss_dssp SCSTTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCC
T ss_pred cCCCCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccc
Confidence 988766665544333222100 0011111112222233347999999999999999999999999999999999999876
Q ss_pred cccccchhhhhccCCCCCCccccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHH----------HcCCCeE
Q 008873 449 WDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALV----------AARKPYE 518 (550)
Q Consensus 449 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~----------~~~~~~~ 518 (550)
+............ ... ......+...++++..|+.|. +........+.+. +.+.++.
T Consensus 181 ~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (273)
T d1wb4a1 181 YGNSPQDKANSIA-------EAI----NRSGLSKREYFVFAATGSEDI--AYANMNPQIEAMKALPHFDYTSDFSKGNFY 247 (273)
T ss_dssp BSSSHHHHHHHHH-------HHH----HHHTCCTTSCEEEEEEETTCT--THHHHHHHHHHHHTSTTCCBBSCTTTCCEE
T ss_pred cCCCcccccccch-------hhh----hhhhhcccceEEEEecCCCCc--ccccchhHHHHHHHHHHHHHHHHhcCCCEE
Confidence 5433221111000 000 001111222355666666664 4444444444443 2345888
Q ss_pred EEEcCCCCCcC
Q 008873 519 ILIFPDERHMP 529 (550)
Q Consensus 519 ~~~~p~~~H~~ 529 (550)
+..+++++|.+
T Consensus 248 ~~~~~~ggH~w 258 (273)
T d1wb4a1 248 FLVAPGATHWW 258 (273)
T ss_dssp EEEETTCCSSH
T ss_pred EEEECCCccCH
Confidence 99999999964
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=4.7e-16 Score=144.58 Aligned_cols=238 Identities=13% Similarity=0.068 Sum_probs=147.4
Q ss_pred CCeEEEEEcC-CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCC
Q 008873 297 PPDIVQIQAN-DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTAR 375 (550)
Q Consensus 297 ~~~~~~~~~~-~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~ 375 (550)
+++.+++.+. .|+.|+..+.. +++|+|+++||.++... ...|... ....+++++.|++||+||....+.
T Consensus 5 ~v~~~~~~s~~~~r~i~~~~~~--------~~~p~lyllhG~~g~~d-~~~W~~~-~~~~~~~~~~~~ivV~P~~~~~~~ 74 (280)
T d1dqza_ 5 PVEYLQVPSASMGRDIKVQFQG--------GGPHAVYLLDGLRAQDD-YNGWDIN-TPAFEEYYQSGLSVIMPVGGQSSF 74 (280)
T ss_dssp CEEEEEEEETTTTEEEEEEEEC--------CSSSEEEECCCTTCCSS-SCHHHHH-SCHHHHHTTSSSEEEEECCCTTCT
T ss_pred EEEEEEEecccCCCcceEEeeC--------CCCCEEEECCCCCCCCc-cchhhhc-chHHHHHHhCCcEEEEECCCCCCc
Confidence 5677778765 56777777631 35699999999654321 1233211 123577889999999999643322
Q ss_pred CchhhHHHHh--hccCCCchHH--HHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCccc
Q 008873 376 RGLKFEASIK--HNCGRIDAED--QLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDG 451 (550)
Q Consensus 376 ~~~~~~~~~~--~~~~~~~~~D--~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~ 451 (550)
+.. +..... ..-+....++ +.+.+.++.++..+|++|++|.|+||||++|+.++.++|++|+++++++|..+...
T Consensus 75 ~~~-~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~ 153 (280)
T d1dqza_ 75 YTD-WYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSE 153 (280)
T ss_dssp TSB-CSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTS
T ss_pred Ccc-ccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCccc
Confidence 211 110000 0001111222 34556677777678999999999999999999999999999999999999876543
Q ss_pred ccch-------------hhhhccCCCCCCccccccCChhhhhhcC---CCcEEEEecCCCCCCC--------------hH
Q 008873 452 YDTF-------------YTEKYMGLPSEDPVGYEYSSVMHHVHKM---KGKLLLVHGMIDENVH--------------FR 501 (550)
Q Consensus 452 ~~~~-------------~~~~~~g~~~~~~~~~~~~~~~~~~~~i---~~P~lii~G~~D~~v~--------------~~ 501 (550)
.... .....++.+. ...+...+|...++++ ..++++.+|..|...+ ..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~ 231 (280)
T d1dqza_ 154 SWWPTLIGLAMNDSGGYNANSMWGPSS--DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLR 231 (280)
T ss_dssp TTHHHHHHHHHHHTTSCCHHHHHCSTT--SHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHH
T ss_pred CcchhhhhhhHhhccCCCHhhccCCcc--hhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHHH
Confidence 2100 0011112221 1234555666655554 3688899998876543 24
Q ss_pred HHHHHHHHHHHcCCCeEEEEc-CCCCCcCCCC-CcHHHHHHHHHHHHH
Q 008873 502 HTARLINALVAARKPYEILIF-PDERHMPRRH-RDRIYMEERIWEFIE 547 (550)
Q Consensus 502 ~~~~~~~~l~~~~~~~~~~~~-p~~~H~~~~~-~~~~~~~~~~~~fl~ 547 (550)
.+.++.++|.+++.......+ ++++|.+..+ +........+++||+
T Consensus 232 ~~~~~~~~l~~~g~~~~~~~~~~~GgH~W~~W~~~L~~~~p~~~~~l~ 279 (280)
T d1dqza_ 232 TNQTFRDTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCSCCCSSHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEcCCCccCchHHHHHHHHHhHHHHHHhc
Confidence 567888889888876555555 5678976322 233345577777775
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.66 E-value=3.9e-15 Score=141.10 Aligned_cols=198 Identities=20% Similarity=0.215 Sum_probs=126.3
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccc---cchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWIN---TVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~---~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~ 387 (550)
+.+..+.|.+. ++.|+ |++||++.+.. .|.. .+..+++.++++||.|+++|+||+|.++..........
T Consensus 46 ~~v~~~~p~~~----~~~Pv-vllHG~~~~~~---~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~~ 117 (318)
T d1qlwa_ 46 MYVRYQIPQRA----KRYPI-TLIHGCCLTGM---TWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVK 117 (318)
T ss_dssp EEEEEEEETTC----CSSCE-EEECCTTCCGG---GGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHH
T ss_pred EEEEEECCCCC----CCCcE-EEECCCCCCcC---ccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHHH
Confidence 44555667543 46675 66899988754 3322 22345789999999999999999999987655444444
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHH----------------------------------------
Q 008873 388 CGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSA---------------------------------------- 427 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~---------------------------------------- 427 (550)
+......++ +.+ .....++++.|+|+||.++.
T Consensus 118 ~~~~~~~~l----~~~----~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (318)
T d1qlwa_ 118 LGKAPASSL----PDL----FAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKL 189 (318)
T ss_dssp TTSSCGGGS----CCC----BCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHH
T ss_pred HHHHHHHHH----HHH----hhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHH
Confidence 332222111 110 01123445556666653321
Q ss_pred --------------------HHHhhCCCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCcE
Q 008873 428 --------------------ITLARFPDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGKL 487 (550)
Q Consensus 428 --------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P~ 487 (550)
..+...++.+++.+.. +.+....+......+++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~P~ 244 (318)
T d1qlwa_ 190 AIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSV-------------------------EPGECPKPEDVKPLTSIPV 244 (318)
T ss_dssp HHHHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEE-------------------------SCSCCCCGGGCGGGTTSCE
T ss_pred HhhhccccchhhhcccchhhhhhhhhhhHHHHHHhh-------------------------hcccccchhhhhhhccCCE
Confidence 1111111111111111 1112234556677789999
Q ss_pred EEEecCCCCCCC-----hHHHHHHHHHHHHcCCCeEEEEcCC-----CCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 488 LLVHGMIDENVH-----FRHTARLINALVAARKPYEILIFPD-----ERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 488 lii~G~~D~~v~-----~~~~~~~~~~l~~~~~~~~~~~~p~-----~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
|++||++|.++| ...+..+++++++++.+++++.+|+ ++|.+....+.+++.+.|.+||+++
T Consensus 245 Lii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 245 LVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp EEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred EEEecCcCcccChhhhHHHHHHHHHHHHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 999999999998 4566788899999999999999874 5699866667789999999999986
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.62 E-value=2.4e-15 Score=140.44 Aligned_cols=213 Identities=9% Similarity=-0.042 Sum_probs=126.7
Q ss_pred CCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhh
Q 008873 307 DGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKH 386 (550)
Q Consensus 307 ~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~ 386 (550)
+|.++++...- +.|.||++||.+++.. .| ...+..|+ .+|.|+++|.||+|.+.......
T Consensus 16 ~g~~i~y~~~G---------~g~~vvllHG~~~~~~---~~----~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~~~~--- 75 (298)
T d1mj5a_ 16 KGRRMAYIDEG---------TGDPILFQHGNPTSSY---LW----RNIMPHCA-GLGRLIACDLIGMGDSDKLDPSG--- 75 (298)
T ss_dssp TTEEEEEEEES---------CSSEEEEECCTTCCGG---GG----TTTGGGGT-TSSEEEEECCTTSTTSCCCSSCS---
T ss_pred CCEEEEEEEEc---------CCCcEEEECCCCCCHH---HH----HHHHHHHh-cCCEEEEEeCCCCCCCCCCcccc---
Confidence 78888877542 1267888999877643 23 33455565 46899999999998775421111
Q ss_pred ccCCCchHHHHHHHHHH-HHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCCcccccc-----------
Q 008873 387 NCGRIDAEDQLTGAEWL-IKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTSWDGYDT----------- 454 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l-~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------- 454 (550)
.......+..+.+..+ .+.. ..+++.++|||+||.+++.++.++|+++++++...+.........
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
T d1mj5a_ 76 -PERYAYAEHRDYLDALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQA 152 (298)
T ss_dssp -TTSSCHHHHHHHHHHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHH
T ss_pred -ccccccchhhhhhcccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccccccccchhhhhhhhhhhhh
Confidence 1111233444443333 3333 346899999999999999999999999999888765432111000
Q ss_pred --------------hhhh----hccCCCCC-------------Ccccc-----------c----------cCChhhhhhc
Q 008873 455 --------------FYTE----KYMGLPSE-------------DPVGY-----------E----------YSSVMHHVHK 482 (550)
Q Consensus 455 --------------~~~~----~~~g~~~~-------------~~~~~-----------~----------~~~~~~~~~~ 482 (550)
.... ........ ..... . .......+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (298)
T d1mj5a_ 153 FRSQAGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSE 232 (298)
T ss_dssp HHSTTHHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhhhhhhhhhccccccccchhhhhhhhhhhhccchhhhhhhhhhhhhhhhcchhhhhhhhhhhhhhhhhh
Confidence 0000 00000000 00000 0 0001123456
Q ss_pred CCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHHh
Q 008873 483 MKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIERT 549 (550)
Q Consensus 483 i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~~ 549 (550)
+++|+|+++|+.|...+ ....++. +.-...++++. ++||.+ ..++.+++.+.+.+||++.
T Consensus 233 ~~~P~l~i~g~~d~~~~-~~~~~~~----~~~p~~~~~~~-~~GH~~-~~e~P~~v~~~i~~fl~~~ 292 (298)
T d1mj5a_ 233 SPIPKLFINAEPGALTT-GRMRDFC----RTWPNQTEITV-AGAHFI-QEDSPDEIGAAIAAFVRRL 292 (298)
T ss_dssp CCSCEEEEEEEECSSSS-HHHHHHH----TTCSSEEEEEE-EESSCG-GGTCHHHHHHHHHHHHHHH
T ss_pred cceeEEEEecCCCCcCh-HHHHHHH----HHCCCCEEEEe-CCCCch-HHhCHHHHHHHHHHHHhhh
Confidence 78999999999998765 3333333 33334555544 679987 4567889999999999874
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.2e-12 Score=120.35 Aligned_cols=185 Identities=17% Similarity=0.135 Sum_probs=131.8
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+||++|.+++..+.|+-. ...+.+|+|||||+.|+|+..+.. ...+|.++..++..++++.........
T Consensus 19 ~~l~i~d~dG~~~~~l~~~---------~~~~~sP~wSPDGk~IAf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (269)
T d2hqsa1 19 YELRVSDYDGYNQFVVHRS---------PQPLMSPAWSPDGSKLAYVTFESG-RSALVIQTLANGAVRQVASFPRHNGAP 88 (269)
T ss_dssp EEEEEEETTSCSCEEEEEE---------SSCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTTCCEEEEECCSSCEEEE
T ss_pred EEEEEEcCCCCCcEEEecC---------CCceeeeEECCCCCEEEEEEeecc-CcceeeeecccCceeEEeeeecccccc
Confidence 3689999999999988543 345678999999999999977653 457999999999998887654332211
Q ss_pred ccCccccCCCCCccCCC--cEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 139 LHDCFTPLDKGVTKYSG--GFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.|+++ .+++.+...|...++............+.+......+ .++++++.+++.+...+. .+|
T Consensus 89 ------------~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~--~~i 153 (269)
T d2hqsa1 89 ------------AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP-TWFPDSQNLAFTSDQAGR--PQV 153 (269)
T ss_dssp ------------EECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEE-EECTTSSEEEEEECTTSS--CEE
T ss_pred ------------eecCCCCeeeEeeecCCccceeecccccccceeeeecccccccc-ccccccccceecccccCC--ceE
Confidence 23444 4777777778777877776555555555544333333 488899999999887653 688
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
+..++ ++. ...+++...+ ...+.+|||++.+++..... ....+++++...+.
T Consensus 154 ~~~~~--~~~----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~-~~~~i~~~~~~~~~ 206 (269)
T d2hqsa1 154 YKVNI--NGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGG 206 (269)
T ss_dssp EEEET--TSS----CCEECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCC
T ss_pred eeeec--ccc----cceeeecccccccccccccccceeEEEeecC-CceeeeEeeccccc
Confidence 88888 443 4456665444 45668999999998886654 44588898876554
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.4e-14 Score=130.30 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=71.6
Q ss_pred ceEEEEEcCCCCceeecccccccchhHhHHHHhC--CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 328 YKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 328 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~--G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
.|+ |++||.+.+.. .|......|.+. ||.|+++|.||+|.+...... .++++.+.+..+.+
T Consensus 3 ~Pv-vllHG~~~~~~-------~~~~~~~~l~~~~~~~~v~~~d~~G~g~S~~~~~~---------~~~~~~~~l~~~l~ 65 (268)
T d1pjaa_ 3 KPV-IVVHGLFDSSY-------SFRHLLEYINETHPGTVVTVLDLFDGRESLRPLWE---------QVQGFREAVVPIMA 65 (268)
T ss_dssp CCE-EEECCTTCCGG-------GGHHHHHHHHHHSTTCCEEECCSSCSGGGGSCHHH---------HHHHHHHHHHHHHH
T ss_pred CCE-EEECCCCCCHH-------HHHHHHHHHHhhCCCeEEEEeCCCCCCCCCCcccc---------CHHHHHHHHHHHHh
Confidence 365 56899876543 455567778764 899999999999887643221 13444444444444
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCCc
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAPV 446 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~~ 446 (550)
+- . +++.|+||||||.+++.+|.++|+ +++.+++.++.
T Consensus 66 ~l--~-~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~~ 104 (268)
T d1pjaa_ 66 KA--P-QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSP 104 (268)
T ss_dssp HC--T-TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCC
T ss_pred cc--C-CeEEEEccccHHHHHHHHHHHCCccccceEEEECCC
Confidence 32 3 789999999999999999999998 58988887763
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.49 E-value=2.6e-13 Score=125.74 Aligned_cols=187 Identities=11% Similarity=0.076 Sum_probs=118.5
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
....+|||||++|||++...... ...+||++++.+++.++|+...+. .
T Consensus 43 ~~~p~~SPDG~~iaf~~~~~~~~------------------------------~~~~i~~~~~~~g~~~~lt~~~~~--~ 90 (281)
T d1k32a2 43 INNARFFPDGRKIAIRVMRGSSL------------------------------NTADLYFYNGENGEIKRITYFSGK--S 90 (281)
T ss_dssp EEEEEECTTSSEEEEEEEESTTC------------------------------CEEEEEEEETTTTEEEECCCCCEE--E
T ss_pred ccCEEECCCCCEEEEEEeeCCCC------------------------------CceEEEEEEecCCceEEeeecCCC--c
Confidence 36688999999999998654331 235789999999999988653110 0
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCC--CceEEEEEECCCCceEEEEEeec-CceeeccCcccc---------------
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQ--TKLKVLKFDIKTGQRKVILVEEL-DSWVNLHDCFTP--------------- 145 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~--~~~~l~~~~~~~g~~~~l~~~~~-~~~~~~~~~~~~--------------- 145 (550)
.........+.|||||+.|++...+.. ....++.++.++++.+.+..... ..|......+..
T Consensus 91 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (281)
T d1k32a2 91 TGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGG 170 (281)
T ss_dssp ETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCST
T ss_pred cCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccC
Confidence 111234467899999999988765442 23457777777765543321110 011111000000
Q ss_pred ----------------------CCCCCccCCCcEEEEEccCCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEE
Q 008873 146 ----------------------LDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQV 202 (550)
Q Consensus 146 ----------------------~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l 202 (550)
....+.+.++.+++.++..|..+||+++++|++.++||.+ .+.+ ..|||||++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~---~~~SpDG~~I 247 (281)
T d1k32a2 171 TRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP---RHLNTDGRRI 247 (281)
T ss_dssp TCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE---EEEEESSSCE
T ss_pred CcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeecCCCccc---ccCcCCCCEE
Confidence 0000123344466677778889999999999999999975 3332 2489999999
Q ss_pred EEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 203 YFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 203 ~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
+|... .+||.+++ +++ +.++|+.
T Consensus 248 ~f~~~------~~l~~~d~--~~g----~~~~i~~ 270 (281)
T d1k32a2 248 LFSKG------GSIYIFNP--DTE----KIEKIEI 270 (281)
T ss_dssp EEEET------TEEEEECT--TTC----CEEECCC
T ss_pred EEEeC------CEEEEEEC--CCC----CEEEecc
Confidence 99764 26999998 444 5667764
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.46 E-value=2.2e-13 Score=132.94 Aligned_cols=127 Identities=11% Similarity=-0.100 Sum_probs=92.1
Q ss_pred CeEEEEEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCC------cEEEEECCC
Q 008873 298 PDIVQIQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKG------ILVWKLDNR 371 (550)
Q Consensus 298 ~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G------~~vv~~d~r 371 (550)
...+..+. +|..|+........ +..|.||++||-|++.. .|...+..|++.| |.||+||.|
T Consensus 82 ~~~f~~~i-~G~~iHf~h~~~~~-----~~~~pLlLlHG~P~s~~-------~w~~vi~~La~~g~~~~~~f~VIaPDLp 148 (394)
T d1qo7a_ 82 FPQFTTEI-EGLTIHFAALFSER-----EDAVPIALLHGWPGSFV-------EFYPILQLFREEYTPETLPFHLVVPSLP 148 (394)
T ss_dssp SCEEEEEE-TTEEEEEEEECCSC-----TTCEEEEEECCSSCCGG-------GGHHHHHHHHHHCCTTTCCEEEEEECCT
T ss_pred CCCeEEEE-CCEEEEEEEEeccC-----CCCCEEEEeccccccHH-------HHHHHHHhhccccCCcccceeeeccccc
Confidence 33444433 89999998776644 34477888999988754 4566788898887 999999999
Q ss_pred CCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCC
Q 008873 372 GTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAP 445 (550)
Q Consensus 372 G~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~ 445 (550)
|.|.|..... .......++.+.+..+...- ...+..++|||+||.++..++..+|+.+++++....
T Consensus 149 G~G~S~~P~~------~~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 149 GYTFSSGPPL------DKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp TSTTSCCCCS------SSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred ccCCCCCCCC------CCccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 9998764211 11234566666666666553 345788999999999999999988988888777654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.41 E-value=4.6e-11 Score=114.14 Aligned_cols=124 Identities=12% Similarity=0.108 Sum_probs=87.2
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+++|+++++.+++. .....+..++|||||+.+++...+. .++.+++++++...+.........
T Consensus 67 ~v~v~d~~~~~~~~~~---------~~~~~v~~~~~spdg~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-- 131 (360)
T d1k32a3 67 FLGIYDYRTGKAEKFE---------ENLGNVFAMGVDRNGKFAVVANDRF----EIMTVDLETGKPTVIERSREAMIT-- 131 (360)
T ss_dssp EEEEEETTTCCEEECC---------CCCCSEEEEEECTTSSEEEEEETTS----EEEEEETTTCCEEEEEECSSSCCC--
T ss_pred EEEEEECCCCcEEEee---------CCCceEEeeeecccccccceecccc----ccccccccccceeeeeeccccccc--
Confidence 5889999999888763 3345677899999999998876543 488899999998777653322110
Q ss_pred cCccccCCCCCccCCCc--EEEEEccC-------CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 140 HDCFTPLDKGVTKYSGG--FIWASEKT-------GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~--~~~~s~~~-------g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
. ..|++++ +++..... +..++++++..+++...++.+...+... .|++||+.|++.+.+
T Consensus 132 ----~-----~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~spdg~~l~~~s~~ 199 (360)
T d1k32a3 132 ----D-----FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP-AFDADSKNLYYLSYR 199 (360)
T ss_dssp ----C-----EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEE-EECTTSCEEEEEESC
T ss_pred ----c-----hhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccc-cccCCCCEEEEEeCC
Confidence 0 1345554 55544332 2357889999998888888876655555 499999999998764
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.40 E-value=8.6e-13 Score=113.16 Aligned_cols=169 Identities=12% Similarity=-0.039 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHHcCC
Q 008873 329 KTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIKQGL 408 (550)
Q Consensus 329 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 408 (550)
|+ |++||...+.. .|..+.+.|+++||.|+.++.+|.+.+....... .+++.+.++.+.++.
T Consensus 4 PV-v~vHG~~~~~~-------~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~i~~~~~~~- 65 (179)
T d1ispa_ 4 PV-VMVHGIGGASF-------NFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNYNN---------GPVLSRFVQKVLDET- 65 (179)
T ss_dssp CE-EEECCTTCCGG-------GGHHHHHHHHHTTCCGGGEEECCCSCTTCCHHHH---------HHHHHHHHHHHHHHH-
T ss_pred CE-EEECCCCCCHH-------HHHHHHHHHHHcCCeEEEEecCCccccccccchh---------hhhHHHHHHHHHHhc-
Confidence 65 56899765432 3556788999999999999998876554322211 344555566655542
Q ss_pred CCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCChhhhhhcCCCc
Q 008873 409 AKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSVMHHVHKMKGK 486 (550)
Q Consensus 409 ~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~P 486 (550)
..+++.|+||||||.++..++.++ +++++.+|+.++........ ..+. .......|
T Consensus 66 -~~~~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~~--------~l~~-------------~~~~~~~~ 123 (179)
T d1ispa_ 66 -GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK--------ALPG-------------TDPNQKIL 123 (179)
T ss_dssp -CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB--------CCCC-------------SCTTCCCE
T ss_pred -CCceEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchhh--------hcCC-------------cccccCce
Confidence 346899999999999999998776 67889999887642211000 0000 01123468
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHHH
Q 008873 487 LLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 487 ~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
++.++|..|..|++..+. -...+-+.+++.+|.... .+ ...++.+.+||+.
T Consensus 124 ~~~i~~~~D~~v~~~~~~---------l~~~~~~~~~~~~H~~l~-~~-~~v~~~i~~~L~~ 174 (179)
T d1ispa_ 124 YTSIYSSADMIVMNYLSR---------LDGARNVQIHGVGHIGLL-YS-SQVNSLIKEGLNG 174 (179)
T ss_dssp EEEEEETTCSSSCHHHHC---------CBTSEEEEESSCCTGGGG-GC-HHHHHHHHHHHTT
T ss_pred EEEEEecCCcccCchhhc---------CCCceEEEECCCCchhhc-cC-HHHHHHHHHHHhc
Confidence 999999999999986541 123456778999997422 22 3678888888863
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.39 E-value=8.5e-12 Score=119.40 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=121.4
Q ss_pred eEEEcC-CCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 6 GYWWSL-DSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 6 ~~~wSP-dg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
+..||| ||++|||+.. .+|+++|+++++.+++..
T Consensus 7 ~~~fSP~dG~~~a~~~~-------------------------------------g~v~v~d~~~~~~~~~~~-------- 41 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-------------------------------------GQAFIQDVSGTYVLKVPE-------- 41 (360)
T ss_dssp EEEEEECGGGCEEEEET-------------------------------------TEEEEECTTSSBEEECSC--------
T ss_pred cccccCCCCCEEEEEEC-------------------------------------CeEEEEECCCCcEEEccC--------
Confidence 356999 9999999642 147999999998877621
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK 163 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 163 (550)
...+..++|||||+.|++...+.. ..|++.+.++|+.+++.......+. . .|++++ ++.....
T Consensus 42 --~~~v~~~~~spDg~~l~~~~~~~g--~~v~v~d~~~~~~~~~~~~~~~v~~-----~-------~~spdg~~l~~~~~ 105 (360)
T d1k32a3 42 --PLRIRYVRRGGDTKVAFIHGTREG--DFLGIYDYRTGKAEKFEENLGNVFA-----M-------GVDRNGKFAVVAND 105 (360)
T ss_dssp --CSCEEEEEECSSSEEEEEEEETTE--EEEEEEETTTCCEEECCCCCCSEEE-----E-------EECTTSSEEEEEET
T ss_pred --CCCEEEEEECCCCCEEEEEEcCCC--CEEEEEECCCCcEEEeeCCCceEEe-----e-------eecccccccceecc
Confidence 335778999999999998876643 3488899999998877654332111 1 245555 4433322
Q ss_pred CCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCC-----CCceeEEEEEEeCCCCCCCCCCCeeeCC
Q 008873 164 TGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLD-----GPLESHLYCAKLYPDWNHTLEAPVKLTN 237 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~-----~~~~~~l~~v~~~~~g~~~~~~~~~lt~ 237 (550)
...++.++.++++...+... ...+..+ .|+|||+.|++..... ......++..++ .+. +...++.
T Consensus 106 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~--~~~----~~~~~~~ 176 (360)
T d1k32a3 106 --RFEIMTVDLETGKPTVIERSREAMITDF-TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM--EGR----KIFAATT 176 (360)
T ss_dssp --TSEEEEEETTTCCEEEEEECSSSCCCCE-EECTTSCEEEEEEEECSSTTCSCCEEEEEEEET--TTT----EEEECSC
T ss_pred --ccccccccccccceeeeeecccccccch-hhccceeeeeeeccccccceeeccccceeeecc--ccC----ceeeecc
Confidence 34688888877766555443 3333334 4999999999887532 223456666776 332 3455555
Q ss_pred CCc-eEEEEECCCCCEEEEeecC
Q 008873 238 GKG-KHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 238 ~~~-~~~~~~s~dg~~l~~~~s~ 259 (550)
..+ ...+.+||||++|++....
T Consensus 177 ~~~~~~~~~~spdg~~l~~~s~~ 199 (360)
T d1k32a3 177 ENSHDYAPAFDADSKNLYYLSYR 199 (360)
T ss_dssp SSSBEEEEEECTTSCEEEEEESC
T ss_pred cccccccccccCCCCEEEEEeCC
Confidence 433 4556899999999876543
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.37 E-value=2.3e-11 Score=114.30 Aligned_cols=233 Identities=13% Similarity=0.090 Sum_probs=146.0
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc-ccc-chhH---hHHHHhCCcEEEEECCCCCCCCchhhHH-
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW-INT-VDMR---AQYLRSKGILVWKLDNRGTARRGLKFEA- 382 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~-~~~~---~~~l~~~G~~vv~~d~rG~g~~~~~~~~- 382 (550)
.+|.+..|--.+. .+-++||++|+-.++....... .+. |+.+ -..+-..-|.||++|..|++........
T Consensus 24 ~~laY~t~G~ln~----~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs~p~s~ 99 (357)
T d2b61a1 24 INVAYQTYGTLND----EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSI 99 (357)
T ss_dssp EEEEEEEESCCCT----TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSB
T ss_pred ceEEEEeecccCC----CCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccCCcCCC
Confidence 4555666643332 3458999999965543321100 001 1111 2334456799999999997532111110
Q ss_pred ------HHhhccCCCchHHHHHHHHHHHHcCCCCCCce-EEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC-------
Q 008873 383 ------SIKHNCGRIDAEDQLTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS------- 448 (550)
Q Consensus 383 ------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i-~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~------- 448 (550)
....++....+.|++++-..|+++- .-+++ +++|.||||+.|+..+.++|++++.+|++++..-
T Consensus 100 ~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~L--GI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s~~~~~ 177 (357)
T d2b61a1 100 NPQTGKPYGSQFPNIVVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIG 177 (357)
T ss_dssp CTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHH
T ss_pred CCCCCCCCCcccccchhHHHHHHHHHHHHHh--CcceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccchhHHH
Confidence 0113456678999999998888763 34677 6889999999999999999999999888776421
Q ss_pred --------------cc--cc-c----------------------chhhhhccCCCCC------C---cccc---------
Q 008873 449 --------------WD--GY-D----------------------TFYTEKYMGLPSE------D---PVGY--------- 471 (550)
Q Consensus 449 --------------~~--~~-~----------------------~~~~~~~~g~~~~------~---~~~~--------- 471 (550)
|. .| . ..+.+++...... . .+.|
T Consensus 178 ~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~g~kf~ 257 (357)
T d2b61a1 178 FNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKFL 257 (357)
T ss_dssp HHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHHHHHHH
Confidence 10 00 0 0001111000000 0 0011
Q ss_pred ccC----------------------ChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCC-CCc
Q 008873 472 EYS----------------------SVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDE-RHM 528 (550)
Q Consensus 472 ~~~----------------------~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~-~H~ 528 (550)
... +....+++|++|+|+|..+.|-..|+++..+.++.|...++++++++++.. ||.
T Consensus 258 ~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I~S~~GHd 337 (357)
T d2b61a1 258 ERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGHD 337 (357)
T ss_dssp TTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGGG
T ss_pred hhCCHHHHHHHHHHhhhcccccccccHHHHHhhcCCCEEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEECCCCCcc
Confidence 011 222336889999999999999999999999999999999999999999874 775
Q ss_pred CCCCCcHHHHHHHHHHHHHH
Q 008873 529 PRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 529 ~~~~~~~~~~~~~~~~fl~~ 548 (550)
-.- .+...+.+.|.+||+.
T Consensus 338 afL-~e~~~~~~~I~~fL~~ 356 (357)
T d2b61a1 338 AFL-VDYDQFEKRIRDGLAG 356 (357)
T ss_dssp HHH-HCHHHHHHHHHHHHHT
T ss_pred ccC-cCHHHHHHHHHHHHcc
Confidence 211 2345677788888863
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.36 E-value=4.4e-13 Score=124.17 Aligned_cols=123 Identities=18% Similarity=0.165 Sum_probs=83.1
Q ss_pred CCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEE-EcCCcCCcccccchhhh-hccCCCCC-----CccccccCChhhh
Q 008873 407 GLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAV-SGAPVTSWDGYDTFYTE-KYMGLPSE-----DPVGYEYSSVMHH 479 (550)
Q Consensus 407 ~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~-~~~g~~~~-----~~~~~~~~~~~~~ 479 (550)
..+|++||+|+|+|+||+|++.++..+|++|++++ .+++............. .....+.. ..+.+...++...
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhcccchHHHhhcCCCCCcChhHHHHHHhhcCCcch
Confidence 35899999999999999999999999999997543 33333211111111111 11111111 1122223333333
Q ss_pred hhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCC--CeEEEEcCCCCCcC
Q 008873 480 VHKMKGKLLLVHGMIDENVHFRHTARLINALVAARK--PYEILIFPDERHMP 529 (550)
Q Consensus 480 ~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~--~~~~~~~p~~~H~~ 529 (550)
....+.|+||+||++|.+||+.++.+++++|++.+. +++++..++++|.+
T Consensus 86 ~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v~yv~~~gagH~f 137 (318)
T d2d81a1 86 ANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTF 137 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSE
T ss_pred hccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCceEEEEeCCCCCCC
Confidence 344457999999999999999999999999987654 68889999999997
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1e-11 Score=123.19 Aligned_cols=233 Identities=9% Similarity=0.039 Sum_probs=129.7
Q ss_pred eEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC--
Q 008873 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ-- 83 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~-- 83 (550)
...|||||++|||++.+ .||+.++.+++..+++.+..+...
T Consensus 118 ~~~wSPDG~~iafv~~~-------------------------------------nl~~~~~~~~~~~~lt~~g~~~~i~n 160 (465)
T d1xfda1 118 YAGWGPKGQQLIFIFEN-------------------------------------NIYYCAHVGKQAIRVVSTGKEGVIYN 160 (465)
T ss_dssp BCCBCSSTTCEEEEETT-------------------------------------EEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eeeeccCCceEEEEecc-------------------------------------eEEEEecCCCceEEEecccCcceeec
Confidence 36799999999998643 478888888888888764321100
Q ss_pred --C------CCCceeEEEEECCCCeEEEEEEecCCC------------------------------ceEEEEEECCCCce
Q 008873 84 --N------YDEEYLARVNWMHGNILTAQVLNRSQT------------------------------KLKVLKFDIKTGQR 125 (550)
Q Consensus 84 --~------~~~~~~~~~~wspDg~~i~~~~~r~~~------------------------------~~~l~~~~~~~g~~ 125 (550)
. +.......+.|||||+.|+|..-.... ...|++++++++..
T Consensus 161 G~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~ 240 (465)
T d1xfda1 161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH 240 (465)
T ss_dssp EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred cccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcE
Confidence 0 001112456799999999887422111 12466666665543
Q ss_pred EEEEEeecCceeeccCccccCCCCCccCCCc-E-EEEEccCC-ccEEEEEeCCCceeecccc---cCeEE--EEEEeEee
Q 008873 126 KVILVEELDSWVNLHDCFTPLDKGVTKYSGG-F-IWASEKTG-FRHLYLHDINGTCLGPITE---GDWMV--EQIVGVNE 197 (550)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~s~~~g-~~~l~~~~~~~~~~~~lT~---~~~~~--~~~~~~s~ 197 (550)
+.+....... .....+.. ...|.+++ + +...+|.. ...|+++|+.+++.+.+.. ..|.. ...+.|++
T Consensus 241 ~~~~~~~~~~--~~~~~y~~---~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~ 315 (465)
T d1xfda1 241 DLEMMPPDDP--RMREYYIT---MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK 315 (465)
T ss_dssp CEECCCCCCG--GGSSEEEE---EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT
T ss_pred EEEEeccCcC--ccccceee---eeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc
Confidence 3222111000 00000000 01355655 3 33455544 4678999998887776643 22311 12235999
Q ss_pred cCCEEEEEEcCCCCceeEEEEEEeCCC-CCCCCCCCeeeCCCCc-eEEE-EECCCCCEEEEeecCCCCC--CEEEEEEcC
Q 008873 198 ASGQVYFTGTLDGPLESHLYCAKLYPD-WNHTLEAPVKLTNGKG-KHVA-VLDHNMRNFVDFHDSLDSP--PRILLCSLQ 272 (550)
Q Consensus 198 dg~~l~f~~~~~~~~~~~l~~v~~~~~-g~~~~~~~~~lt~~~~-~~~~-~~s~dg~~l~~~~s~~~~p--~~l~~~~~~ 272 (550)
||+.++|....+.....++|.+.+... .......+++||.+.. ...+ .++.+++.+.|+... ..| ..||.+++.
T Consensus 316 dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~-~~p~~~hly~v~l~ 394 (465)
T d1xfda1 316 DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-DLPRRRQLYSANTV 394 (465)
T ss_dssp TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-SCTTCCEEEEECSS
T ss_pred CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC-CCCCceEEEEEECC
Confidence 999888864322223467777664210 1111225678887653 3343 688999999887653 334 468999886
Q ss_pred CCceeEecc
Q 008873 273 DGSLVLPLY 281 (550)
Q Consensus 273 ~g~~~~~l~ 281 (550)
.+...+.|+
T Consensus 395 g~~~~~~lt 403 (465)
T d1xfda1 395 GNFNRQCLS 403 (465)
T ss_dssp TTCCCBCSS
T ss_pred CCCcceeec
Confidence 554333444
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.31 E-value=1e-10 Score=110.08 Aligned_cols=233 Identities=14% Similarity=0.084 Sum_probs=144.3
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeec---------ccccccchhHhHHHHhCCcEEEEECCCCCCCCchh
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVC---------DSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLK 379 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~---------~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~ 379 (550)
.+|.+..|--.+. .+-++||++|+-.++..+. ..|-...--.-+.+...-|.||++|..|++.+...
T Consensus 27 ~~l~Y~t~G~ln~----~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~~ss~ 102 (362)
T d2pl5a1 27 VVIAYETYGTLSS----SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSG 102 (362)
T ss_dssp EEEEEEEEECCCT----TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSS
T ss_pred ceEEEEeeeccCC----CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcccccC
Confidence 3455555543332 3458999999965554321 12210010012344556799999999997643211
Q ss_pred hHHHH-------hhccCCCchHHHHHHHHHHHHcCCCCCCceE-EEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC---
Q 008873 380 FEASI-------KHNCGRIDAEDQLTGAEWLIKQGLAKVGHIG-LYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS--- 448 (550)
Q Consensus 380 ~~~~~-------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~-i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~--- 448 (550)
..... -..+....+.|+.++-..|.++-.| +++. |+|+||||+.|+..|.++|+.++.+|.+++..-
T Consensus 103 ~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~ 180 (362)
T d2pl5a1 103 PLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSA 180 (362)
T ss_dssp TTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCH
T ss_pred ccccccccccccCcCCccchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCH
Confidence 11000 1234556799988888777776434 4555 889999999999999999999999998876421
Q ss_pred ------------------cc--ccc----------------------chhhhhccCCC--------CCCccccc------
Q 008873 449 ------------------WD--GYD----------------------TFYTEKYMGLP--------SEDPVGYE------ 472 (550)
Q Consensus 449 ------------------~~--~~~----------------------~~~~~~~~g~~--------~~~~~~~~------ 472 (550)
|. .|. ..+.+++.... ....+.|.
T Consensus 181 ~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k 260 (362)
T d2pl5a1 181 MQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGES 260 (362)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHHHHhcCCccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 10 000 00111110000 00001111
Q ss_pred ---cCC---------------------hhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCC-CCC
Q 008873 473 ---YSS---------------------VMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPD-ERH 527 (550)
Q Consensus 473 ---~~~---------------------~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~-~~H 527 (550)
..+ ....+++|++|+|+|..+.|-..|+++..++++.|...+.+++++.++. .||
T Consensus 261 ~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~eI~S~~GH 340 (362)
T d2pl5a1 261 FVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEGH 340 (362)
T ss_dssp SSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBSS
T ss_pred HHhcCCHHHHHHHHhhhhcccccccccHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCc
Confidence 111 1223678999999999999999999999999999999999999988864 678
Q ss_pred cCCCCCcHHHHHHHHHHHHHH
Q 008873 528 MPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 528 ~~~~~~~~~~~~~~~~~fl~~ 548 (550)
.- .-....++.+.|.+||+.
T Consensus 341 da-FL~e~~~~~~~I~~FL~~ 360 (362)
T d2pl5a1 341 DS-FLLKNPKQIEILKGFLEN 360 (362)
T ss_dssp GG-GGSCCHHHHHHHHHHHHC
T ss_pred ch-hccCHHHHHHHHHHHHcC
Confidence 53 223345677888899863
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.29 E-value=6.2e-11 Score=118.30 Aligned_cols=86 Identities=13% Similarity=-0.021 Sum_probs=62.8
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++.|||||++|||.+..... .++ +....++++|+++++...++
T Consensus 64 i~~~~~SpDg~~i~~~~~~~~~---------------------~r~------s~~~~~~l~d~~~~~~~~l~-------- 108 (470)
T d2bgra1 64 INDYSISPDGQFILLEYNYVKQ---------------------WRH------SYTASYDIYDLNKRQLITEE-------- 108 (470)
T ss_dssp CCEEEECTTSSEEEEEEEEEEC---------------------SSS------CEEEEEEEEETTTTEECCSS--------
T ss_pred cceeEECCCCCEEEEEECCcce---------------------eee------ccCceEEEEECCCCcccccc--------
Confidence 3578899999999998643211 000 12357899999999876553
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 130 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~ 130 (550)
.....+..+.|||||+.|+|..++ +||+.+..+|+..+++.
T Consensus 109 -~~~~~~~~~~~SPDG~~ia~~~~~-----~l~~~~~~~g~~~~~t~ 149 (470)
T d2bgra1 109 -RIPNNTQWVTWSPVGHKLAYVWNN-----DIYVKIEPNLPSYRITW 149 (470)
T ss_dssp -CCCTTEEEEEECSSTTCEEEEETT-----EEEEESSTTSCCEECCS
T ss_pred -cCCccccccccccCcceeeEeecc-----cceEEECCCCceeeeee
Confidence 334557789999999999997533 58999999998877764
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=99.25 E-value=7.2e-11 Score=111.67 Aligned_cols=215 Identities=14% Similarity=0.127 Sum_probs=134.7
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCC--chhhHHH-------HhhccCCCchHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARR--GLKFEAS-------IKHNCGRIDAEDQ 396 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~--~~~~~~~-------~~~~~~~~~~~D~ 396 (550)
.+-++||++|+-.++..+..-|.. .--.-+.+-..-|-||++|..|++.. +..-... .-.++....+.|+
T Consensus 42 ~~~NaVlv~h~ltg~~~~~~WW~~-liG~g~alDt~kyfVI~~n~lG~~~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~ 120 (376)
T d2vata1 42 SRDNCVIVCHTLTSSAHVTSWWPT-LFGQGRAFDTSRYFIICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDD 120 (376)
T ss_dssp TSCCEEEEECCTTCCSCGGGTCGG-GBSTTSSBCTTTCEEEEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHH
T ss_pred CCCCEEEEcCCCcCCccccccHHH-hCCCCCccCccceEEEEeccCCCCcCCCCCCCCCcccccCCcccccCCcchhHHH
Confidence 456899999997666554333321 10112345567799999999987532 1110000 0134566789999
Q ss_pred HHHHHHHHHcCCCCCCce-EEEEechhHHHHHHHHhhCCCeeEEEEEcCCcCC---------------------cc--cc
Q 008873 397 LTGAEWLIKQGLAKVGHI-GLYGWSYGGYLSAITLARFPDVFQCAVSGAPVTS---------------------WD--GY 452 (550)
Q Consensus 397 ~~~~~~l~~~~~~d~~~i-~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~~---------------------~~--~~ 452 (550)
+++-..|.++- .-+++ +|+|+||||+.|+..+..+|+++..+|.+++..- |. .|
T Consensus 121 v~aq~~ll~~L--GI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~~~~s~~~~a~~~~~~~ai~~Dp~w~~G~Y 198 (376)
T d2vata1 121 VRIHRQVLDRL--GVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEY 198 (376)
T ss_dssp HHHHHHHHHHH--TCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSBCCHHHHHHHHHHHHHHHHSTTSGGGTC
T ss_pred HHHHHHHHHHh--CcceEEEeecccHHHHHHHHHHHhchHHHhhhcccccccccchHHHHHHHHHHHHhhccccccCCCc
Confidence 99977776652 33566 6889999999999999999999988888765421 10 00
Q ss_pred c-----------------------chhhhhccCCC-------------------------------CCCcccc-------
Q 008873 453 D-----------------------TFYTEKYMGLP-------------------------------SEDPVGY------- 471 (550)
Q Consensus 453 ~-----------------------~~~~~~~~g~~-------------------------------~~~~~~~------- 471 (550)
. ..+.+++...+ ....+.|
T Consensus 199 ~~~~~p~~GL~~Ar~~~~~ty~S~~~~~~rf~~~~~~~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~vesyL~~~g~k 278 (376)
T d2vata1 199 DVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGNSHRAGQPIEAVSSYLRYQAQK 278 (376)
T ss_dssp CTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC---------------------------CGGGHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhccccccccccccchhhhcccccccccccccccchhHHHHHHHHHHhh
Confidence 0 01111110000 0000011
Q ss_pred -----------------c--------cCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcC-CC
Q 008873 472 -----------------E--------YSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFP-DE 525 (550)
Q Consensus 472 -----------------~--------~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p-~~ 525 (550)
. ..+....+++|++|+|+|.++.|-..|+++..++++.| ++.++.+++ ..
T Consensus 279 ~~~rfDansyl~l~~a~d~~Di~~~~~g~l~~aL~~I~a~~LvI~~~sD~lFPp~~~~e~a~~l----~~a~~~~I~S~~ 354 (376)
T d2vata1 279 FAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVEMGRSI----PNSRLCVVDTNE 354 (376)
T ss_dssp HHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTCSSSCHHHHHHHHHHS----TTEEEEECCCSC
T ss_pred hhcccccccHHHHHHHHHhcccccccCCCHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHhc----CCCeEEEECCCC
Confidence 0 01233347889999999999999999999999988876 457888887 56
Q ss_pred CCcCCCCCcHHHHHHHHHHHHHH
Q 008873 526 RHMPRRHRDRIYMEERIWEFIER 548 (550)
Q Consensus 526 ~H~~~~~~~~~~~~~~~~~fl~~ 548 (550)
||.-. -.+.+.+...+.+||++
T Consensus 355 GHDaF-L~e~~~~~~~I~~FL~q 376 (376)
T d2vata1 355 GHDFF-VMEADKVNDAVRGFLDQ 376 (376)
T ss_dssp GGGHH-HHTHHHHHHHHHHHHTC
T ss_pred Ccccc-ccCHHHHHHHHHHHHcC
Confidence 78421 12356677888888864
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=99.21 E-value=1.7e-12 Score=116.26 Aligned_cols=188 Identities=12% Similarity=0.019 Sum_probs=109.0
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
++.|.||++||..++.. .|..+++.| .+|.|+++|++|.+.. .+++.+.++.+.
T Consensus 15 ~~~~~l~~lhg~~g~~~-------~~~~la~~L--~~~~v~~~~~~g~~~~----------------a~~~~~~i~~~~- 68 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLGYGL-------MYQNLSSRL--PSYKLCAFDFIEEEDR----------------LDRYADLIQKLQ- 68 (230)
T ss_dssp TCSEEEEEECCTTCCGG-------GGHHHHHHC--TTEEEEEECCCCSTTH----------------HHHHHHHHHHHC-
T ss_pred CCCCeEEEEcCCCCCHH-------HHHHHHHHC--CCCEEeccCcCCHHHH----------------HHHHHHHHHHhC-
Confidence 34589999999877643 344456666 3799999999987521 345555554432
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcCCcccc------cchhhh---hccCCCC--CCcc--
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDGY------DTFYTE---KYMGLPS--EDPV-- 469 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~~~~~~------~~~~~~---~~~g~~~--~~~~-- 469 (550)
...++.|+||||||.+++.++.+.+ ..+..++...+....... .....+ ....... ....
T Consensus 69 ----~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (230)
T d1jmkc_ 69 ----PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVK 144 (230)
T ss_dssp ----CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTTTCSGGGSHHHH
T ss_pred ----CCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhccccccccccHHHH
Confidence 2367999999999999998887654 445555544432111000 000000 0000000 0000
Q ss_pred ---------ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcC-CCCCcHHHHH
Q 008873 470 ---------GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMP-RRHRDRIYME 539 (550)
Q Consensus 470 ---------~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~-~~~~~~~~~~ 539 (550)
.+..........++++|+++++|+.|..++.... .+.+ ....+++++.+++ +|.. ....+..++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~~~~~-~w~~---~~~~~~~~~~i~g-~H~~ml~~~~~~~va 219 (230)
T d1jmkc_ 145 HGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWLA-SWEE---ATTGAYRMKRGFG-THAEMLQGETLDRNA 219 (230)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCTTEE-CSGG---GBSSCEEEEECSS-CGGGTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccccCcceeeeecCCcccchhHH-HHHH---hccCCcEEEEEcC-CChhhcCCccHHHHH
Confidence 0000011123456789999999999998885422 1111 1234688888986 8974 2334457788
Q ss_pred HHHHHHHHH
Q 008873 540 ERIWEFIER 548 (550)
Q Consensus 540 ~~~~~fl~~ 548 (550)
+.|.+||++
T Consensus 220 ~~I~~~L~~ 228 (230)
T d1jmkc_ 220 GILLEFLNT 228 (230)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 888898875
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.12 E-value=1.6e-11 Score=113.55 Aligned_cols=204 Identities=13% Similarity=0.032 Sum_probs=113.6
Q ss_pred CCceEEEEEcCC--CCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHH-HHH
Q 008873 326 PPYKTLISVYGG--PCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEW 402 (550)
Q Consensus 326 ~~~P~vv~~hGg--~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~-~~~ 402 (550)
...|.||++||. +++.. .|..++..|. .++.|+++|++|.|.+...... .....++++.+. ++.
T Consensus 58 ~~~~~l~c~~~~~~~g~~~-------~y~~la~~L~-~~~~V~al~~pG~~~~~~~~~~-----~~~~s~~~~a~~~~~~ 124 (283)
T d2h7xa1 58 EGRAVLVGCTGTAANGGPH-------EFLRLSTSFQ-EERDFLAVPLPGYGTGTGTGTA-----LLPADLDTALDAQARA 124 (283)
T ss_dssp CCCCEEEEECCCCTTCSTT-------TTHHHHHTTT-TTCCEEEECCTTCCBC---CBC-----CEESSHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCCCHH-------HHHHHHHhcC-CCceEEEEeCCCCCCCCCCccc-----cccCCHHHHHHHHHHH
Confidence 345888999983 22211 2333344444 4699999999998865421110 001124444433 233
Q ss_pred HHHcCCCCCCceEEEEechhHHHHHHHHhhC----CCeeEEEEEcCCcCCccccc-ch----hhhhcc-C--CCCCCcc-
Q 008873 403 LIKQGLAKVGHIGLYGWSYGGYLSAITLARF----PDVFQCAVSGAPVTSWDGYD-TF----YTEKYM-G--LPSEDPV- 469 (550)
Q Consensus 403 l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~----~~~~~~~v~~~~~~~~~~~~-~~----~~~~~~-g--~~~~~~~- 469 (550)
+.... ...++.|+||||||.+++.++.+. +..+.++++.++........ .. ...... . .+.....
T Consensus 125 i~~~~--~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (283)
T d2h7xa1 125 ILRAA--GDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARL 202 (283)
T ss_dssp HHHHH--TTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHhc--CCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHH
Confidence 33321 235799999999999999888753 45677777766543221100 00 000000 0 0000000
Q ss_pred ----ccccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHH
Q 008873 470 ----GYEYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEF 545 (550)
Q Consensus 470 ----~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~f 545 (550)
.+...........+++|+|+++|+.|..++......+.+. ....+++..+|+ +|.....++...+.+.|.+|
T Consensus 203 ~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~~~~~~~w~~~---~~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~ 278 (283)
T d2h7xa1 203 LAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAH---WDLPHTVADVPG-DHFTMMRDHAPAVAEAVLSW 278 (283)
T ss_dssp HHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCCCGGGCCCSCC---CSSCSEEEEESS-CTTHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCeEEEEeCCCCCCCHHHHHHHHHh---CCCCcEEEEEcC-CCcccccCCHHHHHHHHHHH
Confidence 0000000112356789999999999999887765444322 134578889997 78642335677888899999
Q ss_pred HHH
Q 008873 546 IER 548 (550)
Q Consensus 546 l~~ 548 (550)
|+.
T Consensus 279 L~~ 281 (283)
T d2h7xa1 279 LDA 281 (283)
T ss_dssp HHH
T ss_pred HHh
Confidence 975
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=99.10 E-value=2.4e-10 Score=105.31 Aligned_cols=160 Identities=13% Similarity=0.010 Sum_probs=97.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
.+.|| |++||...+.. .. .|..+.+.|+++||.|+.+|++|.|..... . ..+++.++++++.+
T Consensus 30 ~~~PV-vlvHG~~~~~~--~~---~~~~~~~~L~~~Gy~v~~~d~~g~g~~d~~---~--------sae~la~~i~~v~~ 92 (317)
T d1tcaa_ 30 VSKPI-LLVPGTGTTGP--QS---FDSNWIPLSTQLGYTPCWISPPPFMLNDTQ---V--------NTEYMVNAITALYA 92 (317)
T ss_dssp CSSEE-EEECCTTCCHH--HH---HTTTHHHHHHTTTCEEEEECCTTTTCSCHH---H--------HHHHHHHHHHHHHH
T ss_pred CCCcE-EEECCCCCCCc--ch---hHHHHHHHHHhCCCeEEEecCCCCCCCchH---h--------HHHHHHHHHHHHHH
Confidence 45575 56899654322 11 123357899999999999999987644321 1 14667888888877
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCC---CeeEEEEEcCCcCCcccccchhhhhccCCCCCCccccccCCh-hhhhh
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFP---DVFQCAVSGAPVTSWDGYDTFYTEKYMGLPSEDPVGYEYSSV-MHHVH 481 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~ 481 (550)
+. ..++|.|+||||||.++.+++.++| ++++.+|.+++...-..+...........|. .......+. +..+.
T Consensus 93 ~~--g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~~Gt~~a~~~~~~~~~~pa--~~q~~~~s~fl~~L~ 168 (317)
T d1tcaa_ 93 GS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDALAVSAPS--VWQQTTGSALTTALR 168 (317)
T ss_dssp HT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHHHHHTTCBCHH--HHHTBTTCHHHHHHH
T ss_pred hc--cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCCCCcccccchhhhhccCch--hhhhcCCcHHHHHHH
Confidence 64 3468999999999999999999887 4688888887754322111111100000000 000000111 11111
Q ss_pred c-----CCCcEEEEecCCCCCCChHHHHHH
Q 008873 482 K-----MKGKLLLVHGMIDENVHFRHTARL 506 (550)
Q Consensus 482 ~-----i~~P~lii~G~~D~~v~~~~~~~~ 506 (550)
. -.+|++.|++..|.+|.++.+..+
T Consensus 169 ~~~~~~~~V~~t~I~s~~D~iV~P~~~~~~ 198 (317)
T d1tcaa_ 169 NAGGLTQIVPTTNLYSATDEIVQPQVSNSP 198 (317)
T ss_dssp HTTTTBCSSCEEEEECTTCSSSCCCCSSST
T ss_pred hCCCCCCCCCEEEEecCCCcccCccccchh
Confidence 1 126999999999999988765443
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=99.07 E-value=2.9e-10 Score=106.61 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=77.1
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
.|+|+| ++||..+.......+ ..|..+.+.|+++||.|+++|+||.|.+.... ...+++.+.++.+.+
T Consensus 7 ~k~Pvv-lvHG~~g~~~~~~~~-~~~~~~~~~L~~~G~~V~~~~~~g~g~s~~~~----------~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 7 TRYPVI-LVHGLAGTDKFANVV-DYWYGIQSDLQSHGAKVYVANLSGFQSDDGPN----------GRGEQLLAYVKQVLA 74 (319)
T ss_dssp CSSCEE-EECCTTBSSEETTTE-ESSTTHHHHHHHTTCCEEECCCBCSSCTTSTT----------SHHHHHHHHHHHHHH
T ss_pred CCCCEE-EECCCCCCcchhhhh-hhHHHHHHHHHHCCCEEEEecCCCCCCCCCCc----------ccHHHHHHHHHHHHH
Confidence 577875 589976654322111 12455678999999999999999988653211 113455555555554
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
.- +.++|.|+||||||.++..++.++|++++.+|.+++.
T Consensus 75 ~~--~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p 113 (319)
T d1cvla_ 75 AT--GATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTP 113 (319)
T ss_dssp HH--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred Hh--CCCCEEEEeccccHHHHHHHHHHCccccceEEEECCC
Confidence 42 4578999999999999999999999999999988765
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=99.01 E-value=2e-10 Score=116.31 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=86.9
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC--CCCchhhHHHHhhcc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT--ARRGLKFEASIKHNC 388 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~--g~~~~~~~~~~~~~~ 388 (550)
|..-++.|.... ..+|+||||++|||.........+....-.-...++.++++||+++||-. |.-... .......
T Consensus 98 L~LnI~~P~~~~-~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~--~~~~~~~ 174 (534)
T d1llfa_ 98 LTINVVRPPGTK-AGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGD--DIKAEGS 174 (534)
T ss_dssp CEEEEEECTTCC-TTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSH--HHHHHTC
T ss_pred CEEEEEECCCCC-CCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCc--ccccccc
Confidence 677888997542 23689999999998764332222221111112334578999999999942 111100 0011123
Q ss_pred CCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh-C-------CCeeEEEEEcCCc
Q 008873 389 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR-F-------PDVFQCAVSGAPV 446 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~-~-------~~~~~~~v~~~~~ 446 (550)
|+..+.|++.|++|+.+. -.-|+++|.|+|+|.||..+...+.. . ..+|+.+|+.+|.
T Consensus 175 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 175 GNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 445689999999999985 23599999999999999988655531 1 1369999998874
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.98 E-value=1.6e-10 Score=115.53 Aligned_cols=128 Identities=19% Similarity=0.232 Sum_probs=87.8
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC--CCCc-hhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT--ARRG-LKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~--g~~~-~~~~~~~~~~ 387 (550)
|...+|.|... .+++||+|++|||.......... .++ ...++++.+++||+++||-. |.-. .+.... .
T Consensus 82 L~lni~~P~~~---~~~lPV~v~ihGG~~~~g~~~~~--~~~-~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~---~ 152 (483)
T d1qe3a_ 82 LYVNVFAPDTP---SQNLPVMVWIHGGAFYLGAGSEP--LYD-GSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEA---Y 152 (483)
T ss_dssp CEEEEEEECSS---CCSEEEEEEECCSTTTSCCTTSG--GGC-CHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTT---S
T ss_pred CEEEEEECCCC---CCCCceEEEEeecccccCCcccc--ccc-cccccccCceEEEeecccccchhhccccccccc---c
Confidence 67778888753 26899999999986543211111 111 13455567899999999942 1110 000111 1
Q ss_pred cCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcC
Q 008873 388 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 447 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~ 447 (550)
-|+..+.|++.|++|+.+. -.-|+++|.|+|+|.||..+...+... ..+|+.+|+.+|..
T Consensus 153 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 153 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 2344589999999999885 335999999999999999998887642 35899999988764
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.96 E-value=4.4e-10 Score=113.84 Aligned_cols=131 Identities=17% Similarity=0.257 Sum_probs=86.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhH-HHHhCCcEEEEECCCCC--CCC-chhhHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQ-YLRSKGILVWKLDNRGT--ARR-GLKFEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~l~~~G~~vv~~d~rG~--g~~-~~~~~~~~~~ 386 (550)
|...+|.|.... ..+|+||+|++|||.........+... ..... +.+..+++||+++||-. |.- ..+....
T Consensus 106 L~LnI~~P~~~~-~~~~lPV~V~ihGG~f~~G~~~~~~~~-~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~~--- 180 (544)
T d1thga_ 106 LYLNVFRPAGTK-PDAKLPVMVWIYGGAFVYGSSAAYPGN-SYVKESINMGQPVVFVSINYRTGPFGFLGGDAITAE--- 180 (544)
T ss_dssp CEEEEEEETTCC-TTCCEEEEEEECCCTTCCSGGGGCCSH-HHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHH---
T ss_pred CEEEEEECCCCC-CCCCCCEEEEeccCCCccCCCccCCcc-hhhhhhhhccCCeEEEecccccccccccCCchhhcc---
Confidence 677788887543 236899999999987643321111111 11122 34578999999999932 111 1111111
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--------CCeeEEEEEcCCc
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--------PDVFQCAVSGAPV 446 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--------~~~~~~~v~~~~~ 446 (550)
.-++.-+.|++.|++|+.+. ..-|+++|.|+|+|.||..+...+... ..+|+.+|+.+|.
T Consensus 181 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~ 251 (544)
T d1thga_ 181 GNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGG 251 (544)
T ss_dssp TCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCC
T ss_pred ccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccc
Confidence 12344599999999999885 335999999999999999887766521 1489999998864
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=2.6e-10 Score=115.61 Aligned_cols=125 Identities=19% Similarity=0.300 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC--C--CCchhhHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT--A--RRGLKFEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~--g--~~~~~~~~~~~~ 386 (550)
|...+|.|.... ..+++||+|++|||.....-... ++ -...++.++++||.++||-. | ..+. . .
T Consensus 97 L~LnI~~P~~~~-~~~~lPV~v~ihGG~~~~gs~~~----~~-~~~~~~~~~vIvVt~nYRLg~~GFl~~~~---~---~ 164 (532)
T d2h7ca1 97 LYLNIYTPADLT-KKNRLPVMVWIHGGGLMVGAAST----YD-GLALAAHENVVVVTIQYRLGIWGFFSTGD---E---H 164 (532)
T ss_dssp CEEEEEECSCTT-SCCCEEEEEEECCSTTTSCCSTT----SC-CHHHHHHHTCEEEEECCCCHHHHHCCCSS---T---T
T ss_pred CEEEEEECCCCC-CCCCcEEEEEEeCCccccccccc----CC-chhhhhcCceEEEEEeeccCCCccccccc---c---c
Confidence 667788897542 33679999999998665332211 11 13456789999999999942 1 1110 0 1
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCcC
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVT 447 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~~ 447 (550)
.-+...+.|++.|++|+.+. -.-|+++|.|+|+|.||..+...+.. ...+|+.+|+.++..
T Consensus 165 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 165 SRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 12344599999999999885 33599999999999999999877663 245899999988753
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.94 E-value=1.9e-09 Score=98.80 Aligned_cols=102 Identities=19% Similarity=0.133 Sum_probs=72.4
Q ss_pred CCceEEEEEcCCCCceeeccccc-ccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWI-NTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLI 404 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~-~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~ 404 (550)
.|+| ||++||-.+.... |. ..|....+.|.++||.|+++|++|.+.... . .+++.+.++.+.
T Consensus 6 ~~~P-vvlvHG~~g~~~~---~~~~yw~~i~~~L~~~G~~v~~~~~~~~~~~~~---~----------a~~l~~~i~~~~ 68 (285)
T d1ex9a_ 6 TKYP-IVLAHGMLGFDNI---LGVDYWFGIPSALRRDGAQVYVTEVSQLDTSEV---R----------GEQLLQQVEEIV 68 (285)
T ss_dssp CSSC-EEEECCTTCCSEE---TTEESSTTHHHHHHHTTCCEEEECCCSSSCHHH---H----------HHHHHHHHHHHH
T ss_pred CCCC-EEEECCCCCCccc---cchhhHHHHHHHHHhCCCEEEEeCCCCCCCcHH---H----------HHHHHHHHHHHH
Confidence 5789 5779995544321 11 124556889999999999999998764321 0 233444444444
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCc
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPV 446 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~ 446 (550)
+.. ..+++.++||||||..+..++.++|++++.++.++..
T Consensus 69 ~~~--g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 69 ALS--GQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp HHH--CCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred HHc--CCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 432 3468999999999999999999999999999987754
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.88 E-value=1.1e-09 Score=110.35 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=85.0
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHH-HhCCcEEEEECCCCC--CCCchhhHHHHhhc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYL-RSKGILVWKLDNRGT--ARRGLKFEASIKHN 387 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l-~~~G~~vv~~d~rG~--g~~~~~~~~~~~~~ 387 (550)
|..-+|.|.... ..+++||+|++|||.....-...+ ......+ ...+++||.++||-. |.-... .... ..
T Consensus 81 L~LnI~~P~~~~-~~~~~PV~v~ihGG~~~~G~~~~~----~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~-~~~~-~~ 153 (517)
T d1ukca_ 81 LFINVFKPSTAT-SQSKLPVWLFIQGGGYAENSNANY----NGTQVIQASDDVIVFVTFNYRVGALGFLASE-KVRQ-NG 153 (517)
T ss_dssp CEEEEEEETTCC-TTCCEEEEEEECCSTTTSCCSCSC----CCHHHHHHTTSCCEEEEECCCCHHHHHCCCH-HHHH-SS
T ss_pred CEEEEEeCCCCC-CCCCceEEEEEcCCccccCCCccc----cchhhhhhhccccceEEEEecccceeecCcc-cccc-cc
Confidence 666778887542 236789999999986654322221 1112223 356789999999942 111000 0011 11
Q ss_pred cCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh----CCCeeEEEEEcCCcC
Q 008873 388 CGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR----FPDVFQCAVSGAPVT 447 (550)
Q Consensus 388 ~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~----~~~~~~~~v~~~~~~ 447 (550)
.+..-+.|++.|++|+.+. ..-|+++|.|+|+|.||..+...+.. ...+|+.+|+.+|..
T Consensus 154 ~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 154 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 2244589999999999985 33599999999999999988765543 224899999988754
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.84 E-value=5.6e-10 Score=113.99 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=85.2
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecc--cccccchhHhHHHH-hCCcEEEEECCCCC--C--CCchhhHHH
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCD--SWINTVDMRAQYLR-SKGILVWKLDNRGT--A--RRGLKFEAS 383 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~--~~~~~~~~~~~~l~-~~G~~vv~~d~rG~--g--~~~~~~~~~ 383 (550)
|...+|.|.......+++|||||+|||.....-.. .+...+..-...++ ..+++||.++||-. | ..+. .
T Consensus 81 L~LNI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~~~---~- 156 (579)
T d2bcea_ 81 LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGD---S- 156 (579)
T ss_dssp CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSS---T-
T ss_pred CEEEEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccccccccccc---c-
Confidence 67778888654333368999999999854322111 11111111124454 45799999999941 1 1110 1
Q ss_pred HhhccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCc
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPV 446 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~ 446 (550)
..-|+.-+.|++.|++|+.+. ..-|+++|.|+|+|.||..+...+.. ...+|+.+|+.++.
T Consensus 157 --~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs 222 (579)
T d2bcea_ 157 --NLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp --TCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred --CCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCC
Confidence 112344599999999999885 33599999999999999999876653 24689999998864
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.1e-09 Score=100.34 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=57.2
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
.+.| ||++||++++.. .|. .+....++.|+++|.+|.|.+.. .... ..|+.+++..
T Consensus 24 ~~~P-l~l~Hg~~gs~~-------~~~---~l~~~L~~~v~~~d~~g~~~~~~--~~~~--------a~~~~~~~~~--- 79 (286)
T d1xkta_ 24 SERP-LFLVHPIEGSTT-------VFH---SLASRLSIPTYGLQCTRAAPLDS--IHSL--------AAYYIDCIRQ--- 79 (286)
T ss_dssp CSCC-EEEECCTTCCCG-------GGH---HHHHTCSSCEEEECCCTTSCCSC--HHHH--------HHHHHHHHHH---
T ss_pred CCCe-EEEECCCCccHH-------HHH---HHHHHcCCeEEEEeCCCCCCCCC--HHHH--------HHHHHHHHHH---
Confidence 3446 568999888753 232 33333479999999999876532 1110 2333333322
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGA 444 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~ 444 (550)
.. +..++.|+||||||.+++.+|.++|+++..++...
T Consensus 80 ~~--~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 80 VQ--PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp HC--CSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred hc--CCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 21 34689999999999999999999998877655443
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.79 E-value=1.5e-09 Score=109.81 Aligned_cols=128 Identities=16% Similarity=0.254 Sum_probs=85.8
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC--CCCchhhHHHHhhcc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT--ARRGLKFEASIKHNC 388 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~--g~~~~~~~~~~~~~~ 388 (550)
|...+|.|... .+++||+||+|||........ ...++ ....+++.+++||.++||-. |.-.. ......-
T Consensus 92 L~LnI~~P~~~---~~~lPV~v~ihGG~~~~g~~~--~~~~~-~~~~~~~~~vvvVt~nYRlg~~GFl~~---~~~~~~~ 162 (532)
T d1ea5a_ 92 LYLNIWVPSPR---PKSTTVMVWIYGGGFYSGSST--LDVYN-GKYLAYTEEVVLVSLSYRVGAFGFLAL---HGSQEAP 162 (532)
T ss_dssp CEEEEEECSSC---CSSEEEEEEECCSTTTCCCTT--CGGGC-THHHHHHHTCEEEECCCCCHHHHHCCC---TTCSSSC
T ss_pred CEEEEEeCCCC---CCCCcEEEEEEcCCcccccCC--ccccC-cchhhcccCccEEEEeecccccccccc---ccccCCC
Confidence 66677888753 268999999999865322111 11111 13456688999999999941 11000 0001122
Q ss_pred CCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcC
Q 008873 389 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 447 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~ 447 (550)
|..-+.|++.|++|+.+. -.-|+++|.|+|+|.||..+...+... ..+|..+|+.++..
T Consensus 163 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 163 GNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred CcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 334599999999999985 335999999999999999998777631 35799999877653
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=1.6e-09 Score=109.80 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=85.5
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCC----CCCCchhhHHHHhh
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRG----TARRGLKFEASIKH 386 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG----~g~~~~~~~~~~~~ 386 (550)
|...+|.|... ..+++||+|++|||.....-... ..++ .....++.+++||.++||- .-..+. ...
T Consensus 97 L~LnI~~P~~~--~~~~lPV~v~ihGG~~~~gs~~~--~~~~-~~~~~~~~~vvvVt~nYRlg~~Gfl~~~~-----~~~ 166 (542)
T d2ha2a1 97 LYLNVWTPYPR--PASPTPVLIWIYGGGFYSGAASL--DVYD-GRFLAQVEGAVLVSMNYRVGTFGFLALPG-----SRE 166 (542)
T ss_dssp CEEEEEEESSC--CSSCEEEEEEECCSTTTCCCTTS--GGGC-THHHHHHHCCEEEEECCCCHHHHHCCCTT-----CSS
T ss_pred CEEEEEecCCC--CCCCCcEEEEEEECccccccCcc--cccC-chhhhhhccceeEeeeeeccceeeecccc-----ccc
Confidence 66777888643 23689999999998654221111 1111 1233446899999999993 111110 011
Q ss_pred ccCCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcC
Q 008873 387 NCGRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVT 447 (550)
Q Consensus 387 ~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~ 447 (550)
..|..-+.|++.|++|+.+. -.-|+++|.|+|+|.||..+...+... ..+|..+|+.++..
T Consensus 167 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 167 APGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp CCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 22344589999999999885 335999999999999999998777642 25899999887743
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.78 E-value=1.3e-08 Score=79.17 Aligned_cols=98 Identities=16% Similarity=0.011 Sum_probs=66.0
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHH
Q 008873 304 QANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEAS 383 (550)
Q Consensus 304 ~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~ 383 (550)
-.-+|.++++...- +-|.||++||... .|. +.| +.+|.|+++|.||+|.+...
T Consensus 6 ~~~~G~~l~y~~~G---------~G~pvlllHG~~~------~w~-------~~L-~~~yrvi~~DlpG~G~S~~p---- 58 (122)
T d2dsta1 6 LHLYGLNLVFDRVG---------KGPPVLLVAEEAS------RWP-------EAL-PEGYAFYLLDLPGYGRTEGP---- 58 (122)
T ss_dssp EEETTEEEEEEEEC---------CSSEEEEESSSGG------GCC-------SCC-CTTSEEEEECCTTSTTCCCC----
T ss_pred EEECCEEEEEEEEc---------CCCcEEEEecccc------ccc-------ccc-cCCeEEEEEeccccCCCCCc----
Confidence 33478888877663 2256778998421 232 223 46999999999999987532
Q ss_pred HhhccCCCchHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCCCe
Q 008873 384 IKHNCGRIDAEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFPDV 436 (550)
Q Consensus 384 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~ 436 (550)
....+++.+.+..+.+.- +.++..|+||||||.+++.+++..+..
T Consensus 59 ------~~s~~~~a~~i~~ll~~L--~i~~~~viG~S~Gg~ia~~laa~~~~~ 103 (122)
T d2dsta1 59 ------RMAPEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEALGLRA 103 (122)
T ss_dssp ------CCCHHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHHTTCCE
T ss_pred ------ccccchhHHHHHHHHHHh--CCCCcEEEEeCccHHHHHHHHhhcccc
Confidence 123455555555555542 446889999999999999998875543
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2.4e-09 Score=108.13 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCC--CCCchhhHHHHhhcc
Q 008873 311 LYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT--ARRGLKFEASIKHNC 388 (550)
Q Consensus 311 l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~--g~~~~~~~~~~~~~~ 388 (550)
|...+|.|... .+++||+|++|||.....-.... .++ .....++.+++||.++||-. |.-... ......
T Consensus 90 L~lnI~~P~~~---~~~~PV~v~ihGG~~~~gs~~~~--~~~-~~~~~~~~~vVvVt~nYRlg~~Gfl~~~---~~~~~~ 160 (526)
T d1p0ia_ 90 LYLNVWIPAPK---PKNATVLIWIYGGGFQTGTSSLH--VYD-GKFLARVERVIVVSMNYRVGALGFLALP---GNPEAP 160 (526)
T ss_dssp CEEEEEEESSC---CSSEEEEEEECCSTTTSCCTTCG--GGC-THHHHHHHCCEEEEECCCCHHHHHCCCT---TCTTSC
T ss_pred CEEEEEeCCCC---CCCCceEEEEECCCcccccCccc--ccC-ccccccccceeEEecccccccccccCCC---Cccccc
Confidence 66777888753 26889999999987653211111 111 12234567999999999942 110000 001122
Q ss_pred CCCchHHHHHHHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhh--CCCeeEEEEEcCCcC
Q 008873 389 GRIDAEDQLTGAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLAR--FPDVFQCAVSGAPVT 447 (550)
Q Consensus 389 ~~~~~~D~~~~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~--~~~~~~~~v~~~~~~ 447 (550)
|..-+.|++.|++|+.+. ..-|+++|.|+|+|.||..+...+.. ...+|+.+|+.++..
T Consensus 161 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 161 GNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred ccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 344589999999999875 33599999999999999999766653 235788888876543
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.76 E-value=4.4e-09 Score=107.15 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=78.4
Q ss_pred CCCceEEEEEcCCCCceeecccccccchhHhHHHH-hCCcEEEEECCCCC--CCC--chhh-HHHHhhccCCCchHHHHH
Q 008873 325 PPPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLR-SKGILVWKLDNRGT--ARR--GLKF-EASIKHNCGRIDAEDQLT 398 (550)
Q Consensus 325 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~-~~G~~vv~~d~rG~--g~~--~~~~-~~~~~~~~~~~~~~D~~~ 398 (550)
.+++||+||+|||.....-... ..++ ...|+ +.+++||+++||-. |.- +... ........|+.-+.|++.
T Consensus 136 ~~~lPV~V~ihGG~f~~Gs~~~--~~~~--~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~ 211 (571)
T d1dx4a_ 136 TNGLPILIWIYGGGFMTGSATL--DIYN--ADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQAL 211 (571)
T ss_dssp CSSEEEEEEECCSTTTCCCTTC--GGGC--CHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHH
T ss_pred CCCCeEEEEEeCCCccCCCCcc--cccc--hhhhhhcCCeeEEeecceeccccccccccccccccccCCCCcccchHHHH
Confidence 3789999999998654321111 1111 34454 55799999999942 111 1000 000111224455999999
Q ss_pred HHHHHHHc---CCCCCCceEEEEechhHHHHHHHHhhC--CCeeEEEEEcCCcCC
Q 008873 399 GAEWLIKQ---GLAKVGHIGLYGWSYGGYLSAITLARF--PDVFQCAVSGAPVTS 448 (550)
Q Consensus 399 ~~~~l~~~---~~~d~~~i~i~G~S~GG~~a~~~~~~~--~~~~~~~v~~~~~~~ 448 (550)
|++|+.+. ..-|+++|.|+|+|.||..+...+... ..+|+.+|+.++...
T Consensus 212 AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 212 AIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 99999986 235999999999999999998776642 357888888776543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.75 E-value=3.1e-07 Score=87.56 Aligned_cols=81 Identities=2% Similarity=-0.095 Sum_probs=52.1
Q ss_pred eEeecCCEEEEEEcCCC----CceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEE
Q 008873 194 GVNEASGQVYFTGTLDG----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLC 269 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~~~----~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~ 269 (550)
.++++++.+|+...... .....|+.++.. .+. ....+..+.....+.|||||+.++|+..... ..|+++
T Consensus 270 a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~-t~~----~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~--~~v~v~ 342 (368)
T d1mdah_ 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-VGQ----TSGPISNGHDSDAIIAAQDGASDNYANSAGT--EVLDIY 342 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-SCC----EEECCEEEEEECEEEECCSSSCEEEEEETTT--TEEEEE
T ss_pred EEcCCCCEEEEEecCCCceeecCCceEEEEECC-CCc----EeEEecCCCceeEEEECCCCCEEEEEEeCCC--CeEEEE
Confidence 47889999888765322 223578888873 222 2223322222445689999997777665433 479999
Q ss_pred EcCCCceeEecc
Q 008873 270 SLQDGSLVLPLY 281 (550)
Q Consensus 270 ~~~~g~~~~~l~ 281 (550)
|..+|+.++.+.
T Consensus 343 D~~tgk~~~~i~ 354 (368)
T d1mdah_ 343 DAASDQDQSSVE 354 (368)
T ss_dssp ESSSCEEEEECC
T ss_pred ECCCCCEEEEEE
Confidence 999998776654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.64 E-value=7.9e-06 Score=74.47 Aligned_cols=183 Identities=7% Similarity=-0.035 Sum_probs=105.9
Q ss_pred EEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-cee
Q 008873 60 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~ 137 (550)
.+.+++..+++... +.. ........++|||+.++....... .+...+..+++.......... ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~dg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (301)
T d1l0qa2 97 TLSVIDTTSNTVAGTVKT----------GKSPLGLALSPDGKKLYVTNNGDK---TVSVINTVTKAVINTVSVGRSPKGI 163 (301)
T ss_dssp EEEEEETTTTEEEEEEEC----------SSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTEEEEEEECCSSEEEE
T ss_pred eeeecccccceeeeeccc----------cccceEEEeecCCCeeeeeecccc---ceeeeeccccceeeecccCCCceEE
Confidence 45678888876543 221 223456789999998776654432 477788888876554432211 111
Q ss_pred eccCccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 138 NLHDCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.++++ ..++.+..+ ...+.+.+....+............... ++++|+.+++....... ..|
T Consensus 164 -------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~v~~~~~~~--~~v 226 (301)
T d1l0qa2 164 -------------AVTPDGTKVYVANFD-SMSISVIDTVTNSVIDTVKVEAAPSGIA-VNPEGTKAYVTNVDKYF--NTV 226 (301)
T ss_dssp -------------EECTTSSEEEEEETT-TTEEEEEETTTTEEEEEEECSSEEEEEE-ECTTSSEEEEEEECSSC--CEE
T ss_pred -------------Eeeccccceeeeccc-ccccccccccceeeeecccccCCcceee-cccccccccccccccee--eee
Confidence 12333 355554432 2345555555544433333233334443 88999999877654322 457
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
+.+++. .+. ....+..+.....++|||||++|+.+.+.. ..|.++|+++++.+..+
T Consensus 227 ~v~D~~-t~~----~~~~~~~~~~~~~va~spdg~~l~va~~~~---~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 227 SMIDTG-TNK----ITARIPVGPDPAGIAVTPDGKKVYVALSFC---NTVSVIDTATNTITATM 282 (301)
T ss_dssp EEEETT-TTE----EEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEE
T ss_pred eeeecC-CCe----EEEEEcCCCCEEEEEEeCCCCEEEEEECCC---CeEEEEECCCCeEEEEE
Confidence 777872 221 233444444567789999999875554332 37999999998866555
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.62 E-value=1.8e-06 Score=81.20 Aligned_cols=82 Identities=9% Similarity=0.084 Sum_probs=53.9
Q ss_pred EeEeecCCEEEEEEcCCC-----CceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEE
Q 008873 193 VGVNEASGQVYFTGTLDG-----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRIL 267 (550)
Q Consensus 193 ~~~s~dg~~l~f~~~~~~-----~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~ 267 (550)
..+++|++.+|+...... .....|+.++.. .+. ....+..+.....+.|||||+.++++....+ ..|+
T Consensus 254 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~-t~~----~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d--~~i~ 326 (355)
T d2bbkh_ 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TGE----RLAKFEMGHEIDSINVSQDEKPLLYALSTGD--KTLY 326 (355)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-TCC----EEEEEEEEEEECEEEECCSSSCEEEEEETTT--TEEE
T ss_pred EEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC-CCc----EEEEecCCCCEEEEEEcCCCCeEEEEEECCC--CEEE
Confidence 358899999988765322 223578888872 232 2334443333455689999997666654433 5899
Q ss_pred EEEcCCCceeEecc
Q 008873 268 LCSLQDGSLVLPLY 281 (550)
Q Consensus 268 ~~~~~~g~~~~~l~ 281 (550)
++|+++|+.++.+.
T Consensus 327 v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 327 IHDAESGEELRSVN 340 (355)
T ss_dssp EEETTTCCEEEEEC
T ss_pred EEECCCCCEEEEEe
Confidence 99999998777664
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=9e-06 Score=75.92 Aligned_cols=199 Identities=8% Similarity=-0.001 Sum_probs=109.9
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEE-EcccCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWM-DLQCGGTDQ 83 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~ 83 (550)
.++.|||||++|+-...+ ..|.+||+...+.+.. .+
T Consensus 101 ~~v~~s~dg~~l~s~~~d------------------------------------g~i~iwd~~~~~~~~~~~~------- 137 (337)
T d1gxra_ 101 RSCKLLPDGCTLIVGGEA------------------------------------STLSIWDLAAPTPRIKAEL------- 137 (337)
T ss_dssp EEEEECTTSSEEEEEESS------------------------------------SEEEEEECCCC--EEEEEE-------
T ss_pred EEEEEcCCCCEEEEeecc------------------------------------ccccccccccccccccccc-------
Confidence 467899999988654332 1367788876543322 22
Q ss_pred CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEc
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASE 162 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 162 (550)
......+....|+||+..++...... .|...++.+++........... +. .. .+++++ .++...
T Consensus 138 ~~~~~~v~~~~~~~~~~~l~s~~~d~----~i~~~~~~~~~~~~~~~~~~~~-v~---~l-------~~s~~~~~~~~~~ 202 (337)
T d1gxra_ 138 TSSAPACYALAISPDSKVCFSCCSDG----NIAVWDLHNQTLVRQFQGHTDG-AS---CI-------DISNDGTKLWTGG 202 (337)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTTEEEEEECCCSSC-EE---EE-------EECTTSSEEEEEE
T ss_pred cccccccccccccccccccccccccc----cccccccccccccccccccccc-cc---cc-------ccccccccccccc
Confidence 12234567789999999887665333 3788888888765443221111 00 01 123333 444433
Q ss_pred cCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC-CCCc
Q 008873 163 KTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-NGKG 240 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt-~~~~ 240 (550)
.+| .+.+++..+++. +.+. ....+... .|+++++.|+..+.. + ...+| ++ ... +..... ....
T Consensus 203 ~d~--~v~i~d~~~~~~~~~~~-~~~~i~~l-~~~~~~~~l~~~~~d-~--~i~i~--d~--~~~----~~~~~~~~~~~ 267 (337)
T d1gxra_ 203 LDN--TVRSWDLREGRQLQQHD-FTSQIFSL-GYCPTGEWLAVGMES-S--NVEVL--HV--NKP----DKYQLHLHESC 267 (337)
T ss_dssp TTS--EEEEEETTTTEEEEEEE-CSSCEEEE-EECTTSSEEEEEETT-S--CEEEE--ET--TSS----CEEEECCCSSC
T ss_pred ccc--cccccccccceeecccc-cccceEEE-EEcccccccceeccc-c--ccccc--cc--ccc----ccccccccccc
Confidence 333 567777766543 2222 22234444 489999887755443 2 13444 65 222 122222 2334
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...+.|+|||++|+....+ ..+.+.++.+++.+..+
T Consensus 268 i~~v~~s~~g~~l~s~s~D----g~i~iwd~~~~~~~~~~ 303 (337)
T d1gxra_ 268 VLSLKFAYCGKWFVSTGKD----NLLNAWRTPYGASIFQS 303 (337)
T ss_dssp EEEEEECTTSSEEEEEETT----SEEEEEETTTCCEEEEE
T ss_pred cceEEECCCCCEEEEEeCC----CeEEEEECCCCCEEEEc
Confidence 6778999999987654332 47888898888765443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.58 E-value=2.5e-05 Score=71.01 Aligned_cols=185 Identities=6% Similarity=-0.070 Sum_probs=102.3
Q ss_pred EEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++|+++++... +.. ......+.|++||+.++...... ..+...+..+++.............
T Consensus 55 ~i~v~d~~t~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~- 120 (301)
T d1l0qa2 55 DVSIIDTATNNVIATVPA----------GSSPQGVAVSPDGKQVYVTNMAS---STLSVIDTTSNTVAGTVKTGKSPLG- 120 (301)
T ss_dssp EEEEEETTTTEEEEEEEC----------SSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEEEEECSSSEEE-
T ss_pred EEEEEECCCCceeeeeec----------ccccccccccccccccccccccc---ceeeecccccceeeeeccccccceE-
Confidence 47889999987643 322 22345688999999776654433 2477788888876554433221100
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
. .+++++ .++.+... -..+.+.+..+.+.............. .++++++.+++...... .+.
T Consensus 121 ----~-------~~~~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~ 183 (301)
T d1l0qa2 121 ----L-------ALSPDGKKLYVTNNG-DKTVSVINTVTKAVINTVSVGRSPKGI-AVTPDGTKVYVANFDSM----SIS 183 (301)
T ss_dssp ----E-------EECTTSSEEEEEETT-TTEEEEEETTTTEEEEEEECCSSEEEE-EECTTSSEEEEEETTTT----EEE
T ss_pred ----E-------EeecCCCeeeeeecc-ccceeeeeccccceeeecccCCCceEE-Eeeccccceeeeccccc----ccc
Confidence 0 123333 44443322 235666666555433222222122233 48899998887765433 233
Q ss_pred EEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.... ... .....+..........++++++.+++...+ .....++++|+.+++....+.
T Consensus 184 ~~~~--~~~---~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~-~~~~~v~v~D~~t~~~~~~~~ 241 (301)
T d1l0qa2 184 VIDT--VTN---SVIDTVKVEAAPSGIAVNPEGTKAYVTNVD-KYFNTVSMIDTGTNKITARIP 241 (301)
T ss_dssp EEET--TTT---EEEEEEECSSEEEEEEECTTSSEEEEEEEC-SSCCEEEEEETTTTEEEEEEE
T ss_pred cccc--cce---eeeecccccCCcceeecccccccccccccc-ceeeeeeeeecCCCeEEEEEc
Confidence 3343 221 012223333345667899999988665544 233579999998887655443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.58 E-value=4.3e-06 Score=81.31 Aligned_cols=188 Identities=12% Similarity=0.067 Sum_probs=108.7
Q ss_pred EEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+.++|+++++... +.. ......+++||||++++.. ++.. .|.++|+++++.+.+.+-.... ..
T Consensus 43 ~v~v~D~~t~~v~~~~~~----------g~~~~~v~fSpDG~~l~~~-s~dg---~v~~~d~~t~~~~~~~~i~~~~-~~ 107 (432)
T d1qksa2 43 QIALIDGSTYEIKTVLDT----------GYAVHISRLSASGRYLFVI-GRDG---KVNMIDLWMKEPTTVAEIKIGS-EA 107 (432)
T ss_dssp EEEEEETTTCCEEEEEEC----------SSCEEEEEECTTSCEEEEE-ETTS---EEEEEETTSSSCCEEEEEECCS-EE
T ss_pred EEEEEECCCCcEEEEEeC----------CCCeeEEEECCCCCEEEEE-cCCC---CEEEEEeeCCCceEEEEEecCC-CC
Confidence 57889999988753 432 2246678999999988765 4532 4888899988765444322110 00
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeeccccc--------Ce----EEEEEEeEeecCCEEEEE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEG--------DW----MVEQIVGVNEASGQVYFT 205 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~--------~~----~~~~~~~~s~dg~~l~f~ 205 (550)
.+..+++ .+++|+ .++++.. ....|.++|.++++......+ .+ ....+ ..|+||+.++++
T Consensus 108 ~~~~~s~-----~~SpDG~~l~vs~~-~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~s~dg~~~~vs 180 (432)
T d1qksa2 108 RSIETSK-----MEGWEDKYAIAGAY-WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI-LASHYRPEFIVN 180 (432)
T ss_dssp EEEEECC-----STTCTTTEEEEEEE-ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE-EECSSSSEEEEE
T ss_pred CCeEEec-----ccCCCCCEEEEEcC-CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEE-EECCCCCEEEEE
Confidence 0011122 245555 5555433 123577788777654332211 11 11122 378898888877
Q ss_pred EcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEe
Q 008873 206 GTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLP 279 (550)
Q Consensus 206 ~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~ 279 (550)
....+ .+..++.. ++.. .+...+..+...+.+.++|||++++...... ..+.+++..+++....
T Consensus 181 ~~~~~----~i~~~d~~-~~~~--~~~~~i~~g~~~~~~~~spdg~~~~va~~~~---~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 181 VKETG----KILLVDYT-DLNN--LKTTEISAERFLHDGGLDGSHRYFITAANAR---NKLVVIDTKEGKLVAI 244 (432)
T ss_dssp ETTTT----EEEEEETT-CSSE--EEEEEEECCSSEEEEEECTTSCEEEEEEGGG---TEEEEEETTTTEEEEE
T ss_pred EccCC----eEEEEEcc-CCCc--ceEEEEcccCccccceECCCCCEEEEecccc---ceEEEeecccceEEEE
Confidence 76543 56666762 2210 1223344445677889999999887665443 3778888877665433
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.57 E-value=6e-06 Score=76.31 Aligned_cols=202 Identities=10% Similarity=-0.003 Sum_probs=113.6
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
..+++||||+.|||...+ .++++|+++++...+- .
T Consensus 21 ~~~a~~~~g~~l~~~~~~-------------------------------------~v~i~~~~~~~~~~~~--------~ 55 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCNGT-------------------------------------SVYTVPVGSLTDTEIY--------T 55 (311)
T ss_dssp CCCEECTTSSEEEEEETT-------------------------------------EEEEEETTCSSCCEEE--------C
T ss_pred EEEEEcCCCCEEEEEeCC-------------------------------------EEEEEECCCCceeEEE--------c
Confidence 357899999999996311 3578899887654432 1
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeec-CceeeccCccccCCCCCccCCCc--EEEEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGG--FIWAS 161 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~s 161 (550)
.-...+..++|||||++|+...... .|.+.++.+++......... ...+.. + .|++++ ++..+
T Consensus 56 ~H~~~v~~~~~sp~g~~latg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~---v-------~~s~d~~~l~~~~ 121 (311)
T d1nr0a1 56 EHSHQTTVAKTSPSGYYCASGDVHG----NVRIWDTTQTTHILKTTIPVFSGPVKD---I-------SWDSESKRIAAVG 121 (311)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTS----EEEEEESSSTTCCEEEEEECSSSCEEE---E-------EECTTSCEEEEEE
T ss_pred CCCCCEEEEEEeCCCCeEeccccCc----eEeeeeeeccccccccccccccCcccc---c-------ccccccccccccc
Confidence 2245688899999999887664332 35566666665322221111 111110 1 234444 33343
Q ss_pred cc-CCccEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC-C
Q 008873 162 EK-TGFRHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN-G 238 (550)
Q Consensus 162 ~~-~g~~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~ 238 (550)
+. ....+|| +.+.++ ...+....-.+.... |+|+++.++.++..++. ..+| ++. .+. ....+.. .
T Consensus 122 ~~~~~~~~v~--~~~~~~~~~~l~~h~~~v~~v~-~~~~~~~~l~sgs~d~~--i~i~--d~~-~~~----~~~~~~~~~ 189 (311)
T d1nr0a1 122 EGRERFGHVF--LFDTGTSNGNLTGQARAMNSVD-FKPSRPFRIISGSDDNT--VAIF--EGP-PFK----FKSTFGEHT 189 (311)
T ss_dssp CCSSCSEEEE--ETTTCCBCBCCCCCSSCEEEEE-ECSSSSCEEEEEETTSC--EEEE--ETT-TBE----EEEEECCCS
T ss_pred cccccccccc--cccccccccccccccccccccc-ccccceeeecccccccc--cccc--ccc-ccc----ccccccccc
Confidence 32 2333444 444433 345554443455544 89999877777666542 4444 551 111 1222222 2
Q ss_pred CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.....+.++|++++++....+ ..+.+.+..+++....+.
T Consensus 190 ~~i~~v~~~p~~~~l~~~~~d----~~v~~~d~~~~~~~~~~~ 228 (311)
T d1nr0a1 190 KFVHSVRYNPDGSLFASTGGD----GTIVLYNGVDGTKTGVFE 228 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCEEEECB
T ss_pred ccccccccCcccccccccccc----cccccccccccccccccc
Confidence 336777899999987655433 367888888877655443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.56 E-value=1.1e-05 Score=76.49 Aligned_cols=212 Identities=9% Similarity=-0.004 Sum_probs=112.4
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||+.||....+ ..|.+||+++++...+..- .
T Consensus 11 t~~~~s~dg~~la~~~~~------------------------------------~~i~iw~~~~~~~~~~~~l------~ 48 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNN------------------------------------HEVHIYEKSGNKWVQVHEL------K 48 (371)
T ss_dssp CEEEECTTSSEEEEECSS------------------------------------SEEEEEEEETTEEEEEEEE------E
T ss_pred EEEEECCCCCEEEEEeCC------------------------------------CEEEEEECCCCCEEEEEEe------c
Confidence 578999999999875322 1467889988865544221 2
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeec-CceeeccCccccCCCCCccCCCc-EEEEEc
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWVNLHDCFTPLDKGVTKYSGG-FIWASE 162 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 162 (550)
.-...+..++|||||++|+...... . |.+-++.+++.+....... ...+.. . .|++++ .++...
T Consensus 49 gH~~~V~~l~fsp~~~~l~s~s~D~--~--i~vWd~~~~~~~~~~~~~~~~~~v~~---i-------~~~p~~~~l~~~s 114 (371)
T d1k8kc_ 49 EHNGQVTGVDWAPDSNRIVTCGTDR--N--AYVWTLKGRTWKPTLVILRINRAARC---V-------RWAPNEKKFAVGS 114 (371)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTS--C--EEEEEEETTEEEEEEECCCCSSCEEE---E-------EECTTSSEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCC--e--EEEEeecccccccccccccccccccc---c-------ccccccccceeec
Confidence 2245688899999999887764322 2 4444555555443332211 110100 1 234444 454544
Q ss_pred cCCccEEEEEeCCCceeeccc---ccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCC--------CCC
Q 008873 163 KTGFRHLYLHDINGTCLGPIT---EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHT--------LEA 231 (550)
Q Consensus 163 ~~g~~~l~~~~~~~~~~~~lT---~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~--------~~~ 231 (550)
.++.-.+|.++.......... ...-.+... .|+|+|+.|+..+. ++ ...+|........... ...
T Consensus 115 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v-~~~p~~~~l~s~s~-D~--~v~v~~~~~~~~~~~~~~~~~~~~~~~ 190 (371)
T d1k8kc_ 115 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSL-DWHPNSVLLAAGSC-DF--KCRIFSAYIKEVEERPAPTPWGSKMPF 190 (371)
T ss_dssp TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE-EECTTSSEEEEEET-TS--CEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred ccCcceeeeeecccccccccccccccccccccc-cccccccceecccc-Cc--EEEEEeeccCccccccccccccccccc
Confidence 556566777765443221111 112234444 48999987754443 33 2556643321000000 000
Q ss_pred Ceee---CC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 232 PVKL---TN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 232 ~~~l---t~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...+ .. ......+.|+|||+.|+....+ ..+.+.|+.++..+..+
T Consensus 191 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----~~i~iwd~~~~~~~~~~ 239 (371)
T d1k8kc_ 191 GELMFESSSSCGWVHGVCFSANGSRVAWVSHD----STVCLADADKKMAVATL 239 (371)
T ss_dssp TCEEEECCCCSSCEEEEEECSSSSEEEEEETT----TEEEEEEGGGTTEEEEE
T ss_pred eeeeeeccCccCcEEEEEeecccccccccccC----CcceEEeeecccceeee
Confidence 0111 11 1125677899999987655433 47888888777655444
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.53 E-value=1.2e-05 Score=74.17 Aligned_cols=188 Identities=9% Similarity=-0.004 Sum_probs=98.1
Q ss_pred EEEEEECCCCce-EEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEE-EEEeecCcee
Q 008873 60 RLGVVSAAGGPV-SWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV-ILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~-l~~~~~~~~~ 137 (550)
.|.+||+.+++. ....+. .....+..++|+|||+.++......... +.+.+.++++... +....+. +
T Consensus 81 ~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~d~~~l~~~~~~~~~~--~~v~~~~~~~~~~~l~~h~~~--v 149 (311)
T d1nr0a1 81 NVRIWDTTQTTHILKTTIP-------VFSGPVKDISWDSESKRIAAVGEGRERF--GHVFLFDTGTSNGNLTGQARA--M 149 (311)
T ss_dssp EEEEEESSSTTCCEEEEEE-------CSSSCEEEEEECTTSCEEEEEECCSSCS--EEEEETTTCCBCBCCCCCSSC--E
T ss_pred eEeeeeeeccccccccccc-------cccCcccccccccccccccccccccccc--ccccccccccccccccccccc--c
Confidence 467889887653 222221 2234678899999999887765432222 4455666665422 2111111 1
Q ss_pred eccCccccCCCCCccCCCc-EEEE-EccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWA-SEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~-s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
. .+ .+++++ ++++ ...+| .|.+++..+++.. .+......+.... |+|+++.|+..+.+.. .
T Consensus 150 ~------~v----~~~~~~~~~l~sgs~d~--~i~i~d~~~~~~~~~~~~~~~~i~~v~-~~p~~~~l~~~~~d~~---v 213 (311)
T d1nr0a1 150 N------SV----DFKPSRPFRIISGSDDN--TVAIFEGPPFKFKSTFGEHTKFVHSVR-YNPDGSLFASTGGDGT---I 213 (311)
T ss_dssp E------EE----EECSSSSCEEEEEETTS--CEEEEETTTBEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSC---E
T ss_pred c------cc----cccccceeeeccccccc--ccccccccccccccccccccccccccc-cCcccccccccccccc---c
Confidence 0 00 123333 3333 33334 4677787765543 3333344455554 9999987776554322 4
Q ss_pred EEEEEEeCCCCCC----CCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 215 HLYCAKLYPDWNH----TLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 215 ~l~~v~~~~~g~~----~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+| +.. .+.. .....+..-.......+.|+||+++|+....+ ..+.+.|+.+++.++.+.
T Consensus 214 ~~~--d~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D----g~v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 214 VLY--NGV-DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD----KTIKIWNVATLKVEKTIP 277 (311)
T ss_dssp EEE--ETT-TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTTEEEEEEE
T ss_pred ccc--ccc-cccccccccccccccccccccccccccCCCCCEEEEEeCC----CeEEEEECCCCcEEEEEE
Confidence 444 441 1210 00000011112236677999999987643222 378999998887666554
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.44 E-value=1.3e-07 Score=85.13 Aligned_cols=194 Identities=11% Similarity=-0.042 Sum_probs=102.2
Q ss_pred ceEEEEEcC--CCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHH-HHHHH
Q 008873 328 YKTLISVYG--GPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTG-AEWLI 404 (550)
Q Consensus 328 ~P~vv~~hG--g~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~-~~~l~ 404 (550)
.|.||++|| ++++.. .|..+++.|.. .+.|+.++.+|.+...... .+++++.+. ++.+.
T Consensus 42 ~~~l~c~~~~~~gg~~~-------~y~~La~~L~~-~~~V~al~~pG~~~~e~~~----------~s~~~~a~~~~~~i~ 103 (255)
T d1mo2a_ 42 EVTVICCAGTAAISGPH-------EFTRLAGALRG-IAPVRAVPQPGYEEGEPLP----------SSMAAVAAVQADAVI 103 (255)
T ss_dssp SSEEEEECCCSSSCSGG-------GGHHHHHHHTT-TCCEEEECCTTSSTTCCEE----------SSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCCCHH-------HHHHHHHhcCC-CceEEEEeCCCcCCCCCCC----------CCHHHHHHHHHHHHH
Confidence 478899997 223221 23334555544 5899999999987542111 123444442 33443
Q ss_pred HcCCCCCCceEEEEechhHHHHHHHHhhC---CCeeEEEEEcCCcCCcc-cccchhhhh----ccCC--CCCCcccc---
Q 008873 405 KQGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPVTSWD-GYDTFYTEK----YMGL--PSEDPVGY--- 471 (550)
Q Consensus 405 ~~~~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~~~~~v~~~~~~~~~-~~~~~~~~~----~~g~--~~~~~~~~--- 471 (550)
+.. ...++.|+||||||.++..+|.+. ...+..+++.++..... .....+... .... ...+....
T Consensus 104 ~~~--~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 181 (255)
T d1mo2a_ 104 RTQ--GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTAL 181 (255)
T ss_dssp HTT--SSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEECSCSSHHHHHHHHHHHHHTTCC----CCCCHHHHHHH
T ss_pred HhC--CCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECCCCCCCccchhhHHHHHHHHhhccccccCCHHHHHHH
Confidence 332 346799999999999999888653 34456666555432111 000000000 0000 00000000
Q ss_pred ---ccCChhhhhhcCCCcEEEEecCCCCCCChHHHHHHHHHHHHcCCCeEEEEcCCCCCcCCCCCcHHHHHHHHHHHHH
Q 008873 472 ---EYSSVMHHVHKMKGKLLLVHGMIDENVHFRHTARLINALVAARKPYEILIFPDERHMPRRHRDRIYMEERIWEFIE 547 (550)
Q Consensus 472 ---~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~p~~~H~~~~~~~~~~~~~~~~~fl~ 547 (550)
...-.......+.+|++++.+..|........ .. .....+++++.+|+ +|.-...++...+.+.|.+||.
T Consensus 182 ~~~~~~~~~~~~~~~~~p~l~v~a~~~~~~~~~~~--w~---~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 182 GAYDRLTGQWRPRETGLPTLLVSAGEPMGPWPDDS--WK---PTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 254 (255)
T ss_dssp HHHHHHHHHCCCCCCCCCEEEEECCSSSSCCTTCC--CC---CCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCccccceEEEeecCCCCCcchhhH--HH---HhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHhC
Confidence 00000111345678999999987754433211 10 11234688999997 6752223567778888888884
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.44 E-value=5.1e-05 Score=73.34 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=126.4
Q ss_pred cceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCC
Q 008873 4 KTGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQ 83 (550)
Q Consensus 4 ~~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 83 (550)
..++.|++||+.|.|++.+...... + ... . ..+-..++++..+.+.......+-..
T Consensus 173 ~~~~~W~~D~~~~~Y~~~~~~~~~~--------~----~~~-------~-~~~~~~~v~~h~lgt~~~~d~~v~~e---- 228 (430)
T d1qfma1 173 FSCMAWTHDGKGMFYNAYPQQDGKS--------D----GTE-------T-STNLHQKLYYHVLGTDQSEDILCAEF---- 228 (430)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCC--------S----SSC-------C-CCCCCCEEEEEETTSCGGGCEEEECC----
T ss_pred ccceEEcCCCCEEEEEEeccccCcc--------c----ccc-------c-ccCCcceEEEEECCCCcccccccccc----
Confidence 4678999999999999876432100 0 000 0 00011346666666653321111000
Q ss_pred CCCCceeEEEEECCCCeEEEEEEec-CCCceEEEEEECCCCc--------eEEEEEeecCceeeccCccccCCCCCccCC
Q 008873 84 NYDEEYLARVNWMHGNILTAQVLNR-SQTKLKVLKFDIKTGQ--------RKVILVEELDSWVNLHDCFTPLDKGVTKYS 154 (550)
Q Consensus 84 ~~~~~~~~~~~wspDg~~i~~~~~r-~~~~~~l~~~~~~~g~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
.+.......+..|+||+.++..... ......+|.+++.... ...+.......+. .. ...+
T Consensus 229 ~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~ 297 (430)
T d1qfma1 229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-------YV----TNEG 297 (430)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-------EE----EEET
T ss_pred ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceE-------EE----ecCC
Confidence 1223345667789999976654433 3345678998876432 1222221111110 00 1124
Q ss_pred CcEEEEEccCC-ccEEEEEeCCCce---eeccc-ccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCC
Q 008873 155 GGFIWASEKTG-FRHLYLHDINGTC---LGPIT-EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTL 229 (550)
Q Consensus 155 ~~~~~~s~~~g-~~~l~~~~~~~~~---~~~lT-~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~ 229 (550)
+.+++.++.++ ...|+.++++... ++.|. ..+..+... ..+..++.|++....++ ...|..+++ .++
T Consensus 298 ~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~-~~~~~~~~lvl~~~~~~--~~~l~v~~~--~~~--- 369 (430)
T d1qfma1 298 TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW-VACVRSNFLVLCYLHDV--KNTLQLHDL--ATG--- 369 (430)
T ss_dssp TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEE-EEEETTTEEEEEEEETT--EEEEEEEET--TTC---
T ss_pred ceeecccCcccccceeEEecCCCCccccceEEecccCcceeee-EEEEECCEEEEEEEcCC--EeEEEEEEC--CCC---
Confidence 44777787754 5789999875432 23333 233333211 24456678888877665 367777887 443
Q ss_pred CCCeeeCC-CCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 230 EAPVKLTN-GKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 230 ~~~~~lt~-~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
....+.. ..+ ......+++...+.+.+++..+|+.+|.+|+++++
T Consensus 370 -~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 370 -ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp -CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -cEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 2333332 223 23334456777889999999999999999998886
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.43 E-value=4.1e-05 Score=72.22 Aligned_cols=82 Identities=6% Similarity=-0.018 Sum_probs=54.1
Q ss_pred EeEeecCCEEEEEEcCCC-----CceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEE
Q 008873 193 VGVNEASGQVYFTGTLDG-----PLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRIL 267 (550)
Q Consensus 193 ~~~s~dg~~l~f~~~~~~-----~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~ 267 (550)
..++++++.+++...... .....+..++.. .+. ....+..+.....+.|||||+.++++..+.+ ..++
T Consensus 272 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-t~~----~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d--~~v~ 344 (373)
T d2madh_ 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL-VGQ----TSSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLH 344 (373)
T ss_pred eEEecCCCeEEEecCCCceEEeecCCCeEEEEECC-CCc----EEEEecCCCCeeEEEECCCCCEEEEEEeCCC--CeEE
Confidence 458899988887665432 112356666762 232 3445555555777899999998766654433 4799
Q ss_pred EEEcCCCceeEecc
Q 008873 268 LCSLQDGSLVLPLY 281 (550)
Q Consensus 268 ~~~~~~g~~~~~l~ 281 (550)
++|+.+|+.++.+.
T Consensus 345 v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 345 IYDAGAGDQDQSTV 358 (373)
T ss_pred EEECCCCCEEEEEC
Confidence 99999999777664
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.42 E-value=1.7e-05 Score=73.36 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=105.8
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
+|+.++.++++....... ....-..+++++||++++...........|+.++..+++...+........
T Consensus 62 ~I~ri~p~g~~~~~~~~~--------~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--- 130 (319)
T d2dg1a1 62 NIFKINPETKEIKRPFVS--------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY--- 130 (319)
T ss_dssp EEEEECTTTCCEEEEEEC--------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC---
T ss_pred EEEEEECCCCeEEEEEeC--------CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCccc---
Confidence 466777777665443221 122345678999998665433222234468888998888766543221111
Q ss_pred cCccccCCCCCccCCCcEEEEEccCC-----ccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTG-----FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g-----~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
.+... ..++++-+|+++..+ ...+|+++.+++..+.+..+-.....+ .|++|++.||++-... .
T Consensus 131 ----~~nd~--~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGi-a~s~dg~~lyvad~~~----~ 199 (319)
T d2dg1a1 131 ----CIDDM--VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGI-ALSTDEKVLWVTETTA----N 199 (319)
T ss_dssp ----CEEEE--EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEE-EECTTSSEEEEEEGGG----T
T ss_pred ----CCcce--eEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeee-eeccccceEEEecccC----C
Confidence 11000 124555455555332 457999999887766665432122344 4999999999886643 4
Q ss_pred EEEEEEeCCCCCCCCCCCee----eCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 215 HLYCAKLYPDWNHTLEAPVK----LTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~----lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.|+++++..++......... .....+-..+.++++|...+.... ...|.+++. +|+.+..+
T Consensus 200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~g~V~~~~p-~G~~l~~i 264 (319)
T d2dg1a1 200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----QGRVLVFNK-RGYPIGQI 264 (319)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----TTEEEEECT-TSCEEEEE
T ss_pred ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----CCEEEEECC-CCcEEEEE
Confidence 68888874333210000001 111112344577788864443322 247888885 67655544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.40 E-value=5.3e-05 Score=70.73 Aligned_cols=134 Identities=11% Similarity=-0.059 Sum_probs=72.2
Q ss_pred EEEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecC------CCceEEEEEECCCCceEEEEEe
Q 008873 59 VRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRS------QTKLKVLKFDIKTGQRKVILVE 131 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~------~~~~~l~~~~~~~g~~~~l~~~ 131 (550)
..+|++|.++++... +.. .....++|||||+.|+...... .....|.++|+.+++.......
T Consensus 28 ~~v~v~D~~tg~~~~~~~~-----------g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~ 96 (355)
T d2bbkh_ 28 TQQFVIDGEAGRVIGMIDG-----------GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL 96 (355)
T ss_dssp EEEEEEETTTTEEEEEEEE-----------CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCcEEEEEEC-----------CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEec
Confidence 578999999998653 322 1233589999999776653221 1234689999999987654432
Q ss_pred ec-C-ceeeccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceee-cccccCeEEE------EEEeEeecCCE
Q 008873 132 EL-D-SWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVE------QIVGVNEASGQ 201 (550)
Q Consensus 132 ~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~------~~~~~s~dg~~ 201 (550)
.. . .+....+ ....+++++ .+++.+......+++.+..+++.. .+........ ....+++||+.
T Consensus 97 ~~~~~~~~~~~~------~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~ 170 (355)
T d2bbkh_ 97 PDAPRFLVGTYP------WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL 170 (355)
T ss_dssp TTCCCCCBSCCG------GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCE
T ss_pred CCcceeecCCCC------ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCE
Confidence 21 1 1111101 011234444 455544444456777777665533 2322221110 12346778777
Q ss_pred EEEEEcCC
Q 008873 202 VYFTGTLD 209 (550)
Q Consensus 202 l~f~~~~~ 209 (550)
+++.....
T Consensus 171 ~~v~~~~~ 178 (355)
T d2bbkh_ 171 AKVAFGTE 178 (355)
T ss_dssp EEEECCSS
T ss_pred EEEEecCC
Confidence 76665443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.40 E-value=5.4e-05 Score=73.17 Aligned_cols=214 Identities=14% Similarity=0.084 Sum_probs=119.9
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.+||||+++||.....+. + ...|+++|+++|+.....+.
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~-e------------------------------~~~l~v~Dl~tg~~~~~~i~------- 169 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGS-D------------------------------WVTIKFMKVDGAKELPDVLE------- 169 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTC-S------------------------------CEEEEEEETTTTEEEEEEEE-------
T ss_pred cceEecCCCCEEEEEeccccC-c------------------------------hheeEEeccCcceecccccc-------
Confidence 467899999999998655332 1 25789999999987654432
Q ss_pred CCCceeEEEEECCCCeEEEEEEecC------------CCceEEEEEECCCCce--EEEEEeecC-ceeeccCccccCCCC
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRS------------QTKLKVLKFDIKTGQR--KVILVEELD-SWVNLHDCFTPLDKG 149 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~------------~~~~~l~~~~~~~g~~--~~l~~~~~~-~~~~~~~~~~~~~~~ 149 (550)
......+.|++|++.+++..... ....++|+-.+.+... ..+..+... .|... .
T Consensus 170 --~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~------~--- 238 (430)
T d1qfma1 170 --RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG------A--- 238 (430)
T ss_dssp --EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE------E---
T ss_pred --cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEe------e---
Confidence 11124578999999777664221 1234688877777643 455544332 23211 0
Q ss_pred CccCCC-cEEEEEcc---CCccEEEEEeCCCcee--------eccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 150 VTKYSG-GFIWASEK---TGFRHLYLHDINGTCL--------GPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 150 ~~~~~~-~~~~~s~~---~g~~~l~~~~~~~~~~--------~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
..+.+ .+++++.. .+...+|..++..... .++..+ .... .....+|..+|+.++.+.+ +..|
T Consensus 239 -~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Tn~~a~-~~~L 313 (430)
T d1qfma1 239 -ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY---DYVTNEGTVFTFKTNRHSP-NYRL 313 (430)
T ss_dssp -EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE---EEEEEETTEEEEEECTTCT-TCEE
T ss_pred -eccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccce---EEEecCCceeecccCcccc-ccee
Confidence 11333 35554333 2346788888543211 112111 1111 1244577889999987664 5789
Q ss_pred EEEEeCCCCCCCCCCCee-eCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 217 YCAKLYPDWNHTLEAPVK-LTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~-lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
+.+++. +... ...+. +...+. .....++..+.+|++.... +..++|.++++.+++.
T Consensus 314 ~~~~~~-~~~~--~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~ 371 (430)
T d1qfma1 314 INIDFT-DPEE--SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATGAL 371 (430)
T ss_dssp EEEETT-BCCG--GGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTCCE
T ss_pred EEecCC-CCcc--ccceEEecccCcceeeeEEEEECCEEEEEEEc-CCEeEEEEEECCCCcE
Confidence 999983 2211 12233 333322 3322344445567666544 3456899999876653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.40 E-value=7.8e-05 Score=70.15 Aligned_cols=61 Identities=16% Similarity=-0.007 Sum_probs=41.7
Q ss_pred EEEEEEECCCCceEE-EEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCC------CceEEEEEECCCCceEEEEE
Q 008873 59 VRLGVVSAAGGPVSW-MDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQ------TKLKVLKFDIKTGQRKVILV 130 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~------~~~~l~~~~~~~g~~~~l~~ 130 (550)
..||++|.++++... +... ....+.|||||+.+++...... ....|.++|+.+++......
T Consensus 47 ~~v~v~D~~tg~~~~~~~~~-----------~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~ 114 (373)
T d2madh_ 47 IQQWVLDAGSGSILGHVNGG-----------FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE 114 (373)
T ss_pred ceEEEEECCCCCEEEEEeCC-----------CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEe
Confidence 468999999998764 3221 2235799999998887654321 23458889999998765443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=3.7e-05 Score=71.03 Aligned_cols=75 Identities=7% Similarity=0.026 Sum_probs=40.5
Q ss_pred eEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee-CCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 194 GVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l-t~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
.+++|++.++......+ ...+|.++. ++... ..... ..+.....++|||||++|+...+..+. =.+|.+|.+
T Consensus 236 ~~s~d~~~~~~~~~~~~--~~~~~~~~~--~~~~~--~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~-v~v~~id~~ 308 (333)
T d1ri6a_ 236 HITPDGRHLYACDRTAS--LITVFSVSE--DGSVL--SKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH-ISVYEIVGE 308 (333)
T ss_dssp EECTTSSEEEEEETTTT--EEEEEEECT--TSCCE--EEEEEEECSSSCCCEEECTTSSEEEEECTTTCE-EEEEEEETT
T ss_pred EEecccCceeeecccCC--eEEEEEEcC--CCCEE--EEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCe-EEEEEEECC
Confidence 37888888777665544 245555543 33210 11111 111223456899999987654333222 246666777
Q ss_pred CCc
Q 008873 273 DGS 275 (550)
Q Consensus 273 ~g~ 275 (550)
+|+
T Consensus 309 tG~ 311 (333)
T d1ri6a_ 309 QGL 311 (333)
T ss_dssp TTE
T ss_pred CCc
Confidence 775
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=0.0002 Score=66.36 Aligned_cols=160 Identities=7% Similarity=-0.051 Sum_probs=90.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.+.++++.+++...... .....+..++|+++++.++...... .+.+.++.+++.......... +..
T Consensus 164 ~i~~~~~~~~~~~~~~~--------~~~~~v~~l~~s~~~~~~~~~~~d~----~v~i~d~~~~~~~~~~~~~~~--i~~ 229 (337)
T d1gxra_ 164 NIAVWDLHNQTLVRQFQ--------GHTDGASCIDISNDGTKLWTGGLDN----TVRSWDLREGRQLQQHDFTSQ--IFS 229 (337)
T ss_dssp CEEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECSSC--EEE
T ss_pred ccccccccccccccccc--------ccccccccccccccccccccccccc----cccccccccceeecccccccc--eEE
Confidence 36788998887654422 2234567789999999887765332 477888888875443332221 100
Q ss_pred cCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEE
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYC 218 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~ 218 (550)
. .+++++ +++....+| .|.+++.++++........-.+... .|+|+|+.|+..+. ++ ...+|
T Consensus 230 ---l-------~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~i~~v-~~s~~g~~l~s~s~-Dg--~i~iw- 292 (337)
T d1gxra_ 230 ---L-------GYCPTGEWLAVGMESS--NVEVLHVNKPDKYQLHLHESCVLSL-KFAYCGKWFVSTGK-DN--LLNAW- 292 (337)
T ss_dssp ---E-------EECTTSSEEEEEETTS--CEEEEETTSSCEEEECCCSSCEEEE-EECTTSSEEEEEET-TS--EEEEE-
T ss_pred ---E-------EEcccccccceecccc--ccccccccccccccccccccccceE-EECCCCCEEEEEeC-CC--eEEEE-
Confidence 1 123333 444444444 4666676665544433333345555 49999987765443 33 24444
Q ss_pred EEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEe
Q 008873 219 AKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 219 v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~ 256 (550)
++. .+. ....+.......++.||||+++|+..
T Consensus 293 -d~~-~~~----~~~~~~~~~~v~~~~~s~d~~~l~t~ 324 (337)
T d1gxra_ 293 -RTP-YGA----SIFQSKESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp -ETT-TCC----EEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred -ECC-CCC----EEEEccCCCCEEEEEEeCCCCEEEEE
Confidence 652 222 22333333446778899999987543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.17 E-value=0.00084 Score=60.76 Aligned_cols=186 Identities=15% Similarity=0.021 Sum_probs=104.1
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+.+|.++++.+...+. .....+.+.+||.+++.. .+ .|++++.++|+.+.+.......
T Consensus 41 ~I~r~d~~~g~~~~~~~~----------~~~~~i~~~~dg~l~va~-~~-----gl~~~d~~tg~~~~l~~~~~~~---- 100 (295)
T d2ghsa1 41 ELHELHLASGRKTVHALP----------FMGSALAKISDSKQLIAS-DD-----GLFLRDTATGVLTLHAELESDL---- 100 (295)
T ss_dssp EEEEEETTTTEEEEEECS----------SCEEEEEEEETTEEEEEE-TT-----EEEEEETTTCCEEEEECSSTTC----
T ss_pred EEEEEECCCCeEEEEECC----------CCcEEEEEecCCCEEEEE-eC-----ccEEeecccceeeEEeeeecCC----
Confidence 578899999987766542 345677888999877543 11 4999999999988876532210
Q ss_pred cCccccCCCCCccCCCc-EEEEEcc----CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 140 HDCFTPLDKGVTKYSGG-FIWASEK----TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~-~~~~s~~----~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
+...+.+. ..++++ +.+.+.. .+...+|..+ .++.+.+..+-.....+ .|+++++.+|++-+.. .
T Consensus 101 -~~~~~nd~--~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~~~~~~Ng~-~~s~d~~~l~~~dt~~----~ 170 (295)
T d2ghsa1 101 -PGNRSNDG--RMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSI-CFSPDGTTGYFVDTKV----N 170 (295)
T ss_dssp -TTEEEEEE--EECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEE-EECTTSCEEEEEETTT----C
T ss_pred -Ccccceee--EECCCCCEEEEeccccccccceeEeeec--CCcEEEEeeccCCccee-eecCCCceEEEeeccc----c
Confidence 00001100 124555 4433321 2234667665 34455444321112233 5999999999987754 4
Q ss_pred EEEEEEeCCCCCCCCCCCee---eCCCCc-eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 215 HLYCAKLYPDWNHTLEAPVK---LTNGKG-KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~~~---lt~~~~-~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.||++++.........+... ++...+ -....++.+|...+..... ..|++++. +|+.+..+
T Consensus 171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~----g~V~~~dp-~G~~~~~i 235 (295)
T d2ghsa1 171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE----GAVDRYDT-DGNHIARY 235 (295)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT----TEEEEECT-TCCEEEEE
T ss_pred eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC----CceEEecC-CCcEeeEe
Confidence 68888873222211112222 122222 4455778888755544433 37888885 67655544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.17 E-value=0.00012 Score=70.46 Aligned_cols=190 Identities=7% Similarity=-0.024 Sum_probs=101.5
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|.++|+++++.. .+.. ......+++||||++++.. ++.. .|.+.|+++++...+.+.....- .
T Consensus 43 ~v~vwD~~t~~~~~~l~~----------g~~~~~vafSPDGk~l~~~-~~d~---~v~vwd~~t~~~~~~~~i~~~~~-~ 107 (426)
T d1hzua2 43 QIALVDGDSKKIVKVIDT----------GYAVHISRMSASGRYLLVI-GRDA---RIDMIDLWAKEPTKVAEIKIGIE-A 107 (426)
T ss_dssp EEEEEETTTCSEEEEEEC----------CSSEEEEEECTTSCEEEEE-ETTS---EEEEEETTSSSCEEEEEEECCSE-E
T ss_pred EEEEEECCCCcEEEEEeC----------CCCeeEEEECCCCCEEEEE-eCCC---CEEEEEccCCceeEEEEEeCCCC-C
Confidence 4678899998864 4432 1235678999999988654 4432 48889999998655443221100 0
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceeecccccC--------eE---EEEEEeEeecCCEEEEEE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLGPITEGD--------WM---VEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~--------~~---~~~~~~~s~dg~~l~f~~ 206 (550)
.+-.+++ .+++|+ .++++... ...+.++|..+++...+..+. +. .......+++++.+++..
T Consensus 108 ~~~~~s~-----~~spDG~~l~v~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~ 181 (426)
T d1hzua2 108 RSVESSK-----FKGYEDRYTIAGAYW-PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181 (426)
T ss_dssp EEEEECC-----STTCTTTEEEEEEEE-SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred cceEEee-----eecCCCCEEEEeecC-CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence 0001112 345555 54444321 234566666555433222111 00 011223567777666654
Q ss_pred cCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 207 TLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 207 ~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
... ..+..+... ++. ......+..+.....+.++|++++++..... ...+.+++..+++.....
T Consensus 182 ~~~----~~i~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 245 (426)
T d1hzua2 182 KET----GKVLLVNYK-DID--NLTVTSIGAAPFLADGGWDSSHRYFMTAANN---SNKVAVIDSKDRRLSALV 245 (426)
T ss_dssp TTT----TEEEEEECS-SSS--SCEEEEEECCSSEEEEEECTTSCEEEEEETT---CSEEEEEETTTTEEEEEE
T ss_pred CCC----CeEEEEEec-ccc--ceeeEEeccCCccEeeeECCCCcEEEeeeec---ccceeeeecccccEEEEe
Confidence 432 234444441 221 0122334444557778999999987665443 246778888777754443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.07 E-value=0.0002 Score=64.88 Aligned_cols=106 Identities=7% Similarity=0.029 Sum_probs=54.3
Q ss_pred EEEEEccCCccEEEEEeCCCceeecc--cccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCee
Q 008873 157 FIWASEKTGFRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVK 234 (550)
Q Consensus 157 ~~~~s~~~g~~~l~~~~~~~~~~~~l--T~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~ 234 (550)
+++....+| .|.++++++++...+ ..+...+... .|+++++.|+..+.. + ...+| ++. .+. .......
T Consensus 150 ~l~~g~~dg--~i~~~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d-~--~i~~~--~~~-~~~-~~~~~~~ 219 (299)
T d1nr0a2 150 FVAVGGQDS--KVHVYKLSGASVSEVKTIVHPAEITSV-AFSNNGAFLVATDQS-R--KVIPY--SVA-NNF-ELAHTNS 219 (299)
T ss_dssp EEEEEETTS--EEEEEEEETTEEEEEEEEECSSCEEEE-EECTTSSEEEEEETT-S--CEEEE--EGG-GTT-EESCCCC
T ss_pred ccccccccc--ccccccccccccccccccccccccccc-ccccccccccccccc-c--ccccc--ccc-ccc-ccccccc
Confidence 443433344 566666655543322 1223334444 489999877655443 2 13444 552 121 1001112
Q ss_pred eCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCce
Q 008873 235 LTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSL 276 (550)
Q Consensus 235 lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~ 276 (550)
+.. ......+.|+|++++|+....+ ..+++.++.+++.
T Consensus 220 ~~~h~~~v~~l~~s~~~~~l~sgs~d----g~i~iwd~~~~~~ 258 (299)
T d1nr0a2 220 WTFHTAKVACVSWSPDNVRLATGSLD----NSVIVWNMNKPSD 258 (299)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTCTTS
T ss_pred ccccccccccccccccccceEEEcCC----CEEEEEECCCCCc
Confidence 221 2235667899999987654333 3688888876653
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=98.05 E-value=3.9e-06 Score=76.69 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=71.5
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
...|++|++||...+.. ..|.. .....+|...+++|+++|++... ...+..+.... ...-+.+...+++|.+
T Consensus 68 ~~~pt~iiiHGw~~~~~--~~~~~--~~~~a~l~~~d~NVI~VDW~~~a--~~~Y~~a~~n~--~~Vg~~ia~~i~~l~~ 139 (337)
T d1rp1a2 68 TDKKTRFIIHGFIDKGE--ENWLL--DMCKNMFKVEEVNCICVDWKKGS--QTSYTQAANNV--RVVGAQVAQMLSMLSA 139 (337)
T ss_dssp TTSEEEEEECCCCCTTC--TTHHH--HHHHHHTTTCCEEEEEEECHHHH--SSCHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcCCCC--cchHH--HHHHHHHhcCCceEEEEeecccc--CcchHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45699999999644322 22211 11234566678999999997421 11222222111 0113556667777777
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
+..++.++|.|+|||+||++|..++.+. ..+..++...|..
T Consensus 140 ~~g~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLDPA~ 180 (337)
T d1rp1a2 140 NYSYSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLDPVE 180 (337)
T ss_dssp HHCCCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEESCCC
T ss_pred hcCCChhheEEEeecHHHhhhHHHHHhh-ccccceeccCCCc
Confidence 7667899999999999999998777654 4556666666653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.02 E-value=0.00016 Score=66.65 Aligned_cols=75 Identities=16% Similarity=0.067 Sum_probs=51.4
Q ss_pred eEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEE-EEcccCCCCCC
Q 008873 6 GYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGTDQN 84 (550)
Q Consensus 6 ~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~ 84 (550)
+.++||||++|+....+ ..|.++|+++++... +.+.
T Consensus 1 g~a~~~~~~~l~~~~~~------------------------------------~~v~v~D~~t~~~~~t~~~~------- 37 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTNYP------------------------------------NNLHVVDVASDTVYKSCVMP------- 37 (346)
T ss_dssp CCCCCTTCEEEEEEETT------------------------------------TEEEEEETTTTEEEEEEECS-------
T ss_pred CccCCCCCcEEEEEcCC------------------------------------CEEEEEECCCCCEEEEEEcC-------
Confidence 35689999998875443 257899999998753 3332
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEE
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 127 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~ 127 (550)
.......++|||||+.++....+. ..|+.+|+++++...
T Consensus 38 -~~~~p~~l~~spDG~~l~v~~~~~---~~v~~~d~~t~~~~~ 76 (346)
T d1jmxb_ 38 -DKFGPGTAMMAPDNRTAYVLNNHY---GDIYGIDLDTCKNTF 76 (346)
T ss_dssp -SCCSSCEEEECTTSSEEEEEETTT---TEEEEEETTTTEEEE
T ss_pred -CCCCcceEEECCCCCEEEEEECCC---CcEEEEeCccCeeee
Confidence 122335689999999876554333 258889999887543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.02 E-value=0.00079 Score=64.71 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=39.5
Q ss_pred EEEEEECCCCceEEE-EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEE
Q 008873 60 RLGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILV 130 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~ 130 (550)
.++++|..+++..++ ++. .......+.++|||++++....... .+..++.++++...+..
T Consensus 186 ~i~~~d~~~~~~~~~~~i~--------~g~~~~~~~~spdg~~~~va~~~~~---~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 186 KILLVDYTDLNNLKTTEIS--------AERFLHDGGLDGSHRYFITAANARN---KLVVIDTKEGKLVAIED 246 (432)
T ss_dssp EEEEEETTCSSEEEEEEEE--------CCSSEEEEEECTTSCEEEEEEGGGT---EEEEEETTTTEEEEEEE
T ss_pred eEEEEEccCCCcceEEEEc--------ccCccccceECCCCCEEEEeccccc---eEEEeecccceEEEEec
Confidence 467888887665433 221 1234556899999997776654432 58889999887765544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=0.00079 Score=61.57 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=56.2
Q ss_pred cEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC---CCceE
Q 008873 167 RHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN---GKGKH 242 (550)
Q Consensus 167 ~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~---~~~~~ 242 (550)
..|.++|...++. ..+....-.+... .|+|+++.|+..+.. +. ..+| ++ .... ....+.. .....
T Consensus 206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v-~~~p~~~~l~s~s~d-~~--i~~~--~~--~~~~---~~~~~~~~~~~~~i~ 274 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTGHESDINAI-CFFPNGNAFATGSDD-AT--CRLF--DL--RADQ---ELMTYSHDNIICGIT 274 (340)
T ss_dssp TEEEEEETTTTEEEEEECCCSSCEEEE-EECTTSSEEEEEETT-SC--EEEE--ET--TTTE---EEEEECCTTCCSCEE
T ss_pred ceEEEEECCCCcEEEEEeCCCCCeEEE-EECCCCCEEEEEeCC-Ce--EEEE--ee--cccc---cccccccccccCceE
Confidence 3566777666543 3344334345554 489999877655443 31 3444 55 2110 1122221 12366
Q ss_pred EEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 243 VAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 243 ~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
.+.|+|++++|+....+ ..+++.++.+++.+..+.
T Consensus 275 ~~~~s~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~ 309 (340)
T d1tbga_ 275 SVSFSKSGRLLLAGYDD----FNCNVWDALKADRAGVLA 309 (340)
T ss_dssp EEEECSSSCEEEEEETT----SCEEEEETTTCCEEEEEC
T ss_pred EEEECCCCCEEEEEECC----CEEEEEECCCCcEEEEEc
Confidence 77899999887654333 368888988887665553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.99 E-value=0.0033 Score=56.88 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=91.5
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
+|+.++.++........ ......++++|||++++..... +...++......++...+.......+.+.
T Consensus 50 ~I~~i~p~g~~~~~~~~----------~~~~~gla~~~dG~l~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 117 (302)
T d2p4oa1 50 EIVSITPDGNQQIHATV----------EGKVSGLAFTSNGDLVATGWNA--DSIPVVSLVKSDGTVETLLTLPDAIFLNG 117 (302)
T ss_dssp EEEEECTTCCEEEEEEC----------SSEEEEEEECTTSCEEEEEECT--TSCEEEEEECTTSCEEEEEECTTCSCEEE
T ss_pred EEEEEeCCCCEEEEEcC----------CCCcceEEEcCCCCeEEEecCC--ceEEEEEecccccceeeccccCCccccce
Confidence 46677766543322222 3456678999999955443222 22223333444455666655433322211
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccc--------cCeEEEEEEeEeecCCEEEEEEcCCCC
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITE--------GDWMVEQIVGVNEASGQVYFTGTLDGP 211 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~--------~~~~~~~~~~~s~dg~~l~f~~~~~~~ 211 (550)
. ..++++-+|+++. +...+|.++..++....... ...........+.+++.+|+.....
T Consensus 118 ---i-------~~~~~g~~~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~-- 184 (302)
T d2p4oa1 118 ---I-------TPLSDTQYLTADS-YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEK-- 184 (302)
T ss_dssp ---E-------EESSSSEEEEEET-TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTT--
T ss_pred ---e-------EEccCCCEEeecc-ccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCC--
Confidence 0 1245565666554 44578888877654321110 0000001123456778899887754
Q ss_pred ceeEEEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 212 LESHLYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 212 ~~~~l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
..|++++....+ ................+.+++||..++..... ..+++++. +|+
T Consensus 185 --~~i~~~~~~~~~--~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~----~~V~~i~p-~G~ 239 (302)
T d2p4oa1 185 --MLLLRIPVDSTD--KPGEPEIFVEQTNIDDFAFDVEGNLYGATHIY----NSVVRIAP-DRS 239 (302)
T ss_dssp --TEEEEEEBCTTS--CBCCCEEEEESCCCSSEEEBTTCCEEEECBTT----CCEEEECT-TCC
T ss_pred --CeEEeccccccc--cccccccccCCCCCcceEECCCCCEEEEEcCC----CcEEEECC-CCC
Confidence 478898883222 11122222222334456888999743322222 36777775 455
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.97 E-value=7.4e-06 Score=74.62 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=73.1
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhCCcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSKGILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWLIK 405 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 405 (550)
..+|++|++||-.+... ..|.. .....+|....++|+++|+.... ...+..+.... ...-+.+...++.|..
T Consensus 68 ~~~pt~iiiHG~~~~~~--~~~~~--~~~~a~l~~~d~NVi~VDW~~~a--~~~Y~~a~~n~--~~Vg~~ia~~i~~l~~ 139 (338)
T d1bu8a2 68 LDRKTRFIVHGFIDKGE--DGWLL--DMCKKMFQVEKVNCICVDWRRGS--RTEYTQASYNT--RVVGAEIAFLVQVLST 139 (338)
T ss_dssp TTSEEEEEECCSCCTTC--TTHHH--HHHHHHHTTCCEEEEEEECHHHH--SSCHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCceEEEeCcccCCCC--cccHH--HHHHHHHhcCCceEEEEechhhc--ccchHHHHHhH--HHHHHHHHHHHHHHHH
Confidence 46799999999544322 22211 22234566678999999997432 11233322211 0012344556777666
Q ss_pred cCCCCCCceEEEEechhHHHHHHHHhhCCCeeEEEEEcCCcC
Q 008873 406 QGLAKVGHIGLYGWSYGGYLSAITLARFPDVFQCAVSGAPVT 447 (550)
Q Consensus 406 ~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~~~~~~v~~~~~~ 447 (550)
...++.++|.++|||+||++|..+..+.+.++..++...|..
T Consensus 140 ~~g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 140 EMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp HHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred hcCCCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 656789999999999999999999887666667777766653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.95 E-value=0.0033 Score=58.64 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=96.6
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
|.++|..+++...... .....+..+.|++++..++...... .+...+..+............ ...
T Consensus 145 v~i~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~-~~~-- 209 (388)
T d1erja_ 145 IRIWDIENRKIVMILQ--------GHEQDIYSLDYFPSGDKLVSGSGDR----TVRIWDLRTGQCSLTLSIEDG-VTT-- 209 (388)
T ss_dssp EEEEETTTTEEEEEEC--------CCSSCEEEEEECTTSSEEEEEETTS----EEEEEETTTTEEEEEEECSSC-EEE--
T ss_pred cccccccccccccccc--------cccccccccccccccccccccccce----eeeeeeccccccccccccccc-ccc--
Confidence 5678888876554321 2234577889999999777665332 367778887765544332221 110
Q ss_pred CccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCce-eeccc-------ccCeEEEEEEeEeecCCEEEEEEcCCCC
Q 008873 141 DCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTC-LGPIT-------EGDWMVEQIVGVNEASGQVYFTGTLDGP 211 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~~-~~~lT-------~~~~~~~~~~~~s~dg~~l~f~~~~~~~ 211 (550)
... ...+ .+++....+| .|++++..+++ ...+. .....+... .|+++++.|+..+.. +
T Consensus 210 --~~~------~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~s~~~~~l~s~~~d-~- 276 (388)
T d1erja_ 210 --VAV------SPGDGKYIAAGSLDR--AVRVWDSETGFLVERLDSENESGTGHKDSVYSV-VFTRDGQSVVSGSLD-R- 276 (388)
T ss_dssp --EEE------CSTTCCEEEEEETTS--CEEEEETTTCCEEEEEC------CCCSSCEEEE-EECTTSSEEEEEETT-S-
T ss_pred --ccc------cCCCCCeEEEEcCCC--eEEEeecccCccceeeccccccccCCCCCEEEE-EECCCCCEEEEEECC-C-
Confidence 001 1122 2554444444 46666655433 22221 112234444 489999877654443 2
Q ss_pred ceeEEEEEEeCCCCCCC------CCC-Ceee-CCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 212 LESHLYCAKLYPDWNHT------LEA-PVKL-TNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 212 ~~~~l~~v~~~~~g~~~------~~~-~~~l-t~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
...+|.+.. ..... ... .... ........+.|+|++++|+....+ ..+++.|+.+++.+..+..
T Consensus 277 -~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d----g~i~vwd~~~~~~~~~l~~ 348 (388)
T d1erja_ 277 -SVKLWNLQN--ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD----RGVLFWDKKSGNPLLMLQG 348 (388)
T ss_dssp -EEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT----SEEEEEETTTCCEEEEEEC
T ss_pred -cEEEEeccC--CccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC----CEEEEEECCCCcEEEEEeC
Confidence 245553321 11000 000 0011 112235667899999887654333 3789999988887666543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=0.00052 Score=64.43 Aligned_cols=181 Identities=10% Similarity=-0.049 Sum_probs=88.2
Q ss_pred EEEEECCCCceEEE-EcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeec-Cceee
Q 008873 61 LGVVSAAGGPVSWM-DLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEEL-DSWVN 138 (550)
Q Consensus 61 l~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~ 138 (550)
|.+||+++++..+. .+ ......+..+.|+|||+.++..... ....+|.++.............. ...+.
T Consensus 75 i~vWd~~~~~~~~~~~~-------~~~~~~v~~i~~~p~~~~l~~~s~d--~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 75 AYVWTLKGRTWKPTLVI-------LRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EEEEEEETTEEEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETT--SSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EEEEeeccccccccccc-------ccccccccccccccccccceeeccc--Ccceeeeeecccccccccccccccccccc
Confidence 57788887765433 22 2234567889999999987766433 23456666655443222221111 11110
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCce-----------------eecccccCeEEEEEEeEeecCC
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTC-----------------LGPITEGDWMVEQIVGVNEASG 200 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~-----------------~~~lT~~~~~~~~~~~~s~dg~ 200 (550)
. . .|+|++ ++.....+|.-.||-....... ..........+... .|+|+|+
T Consensus 146 ~---v-------~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~ 214 (371)
T d1k8kc_ 146 S---L-------DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV-CFSANGS 214 (371)
T ss_dssp E---E-------EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE-EECSSSS
T ss_pred c---c-------cccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE-Eeecccc
Confidence 0 0 234444 4444434454334432211000 00111112223444 4899999
Q ss_pred EEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCC
Q 008873 201 QVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDG 274 (550)
Q Consensus 201 ~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g 274 (550)
.|+..+.+ + .|...++. .+. ....+... ....++.|+||++.++ ..+ +....++..+...+
T Consensus 215 ~l~s~~~d-~----~i~iwd~~-~~~----~~~~~~~~~~~v~s~~fs~d~~~la-~g~--d~~~~~~~~~~~~~ 276 (371)
T d1k8kc_ 215 RVAWVSHD-S----TVCLADAD-KKM----AVATLASETLPLLAVTFITESSLVA-AGH--DCFPVLFTYDSAAG 276 (371)
T ss_dssp EEEEEETT-T----EEEEEEGG-GTT----EEEEEECSSCCEEEEEEEETTEEEE-EET--TSSCEEEEEETTTT
T ss_pred cccccccC-C----cceEEeee-ccc----ceeeeecccccceeeeecCCCCEEE-EEc--CCceEEEEeeCCCc
Confidence 88766543 2 34444652 221 22333332 2367788999997654 322 33456777775443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=0.0028 Score=59.23 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=75.7
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEe-ecCceeeccCccccCCCCCccCCCc-EEEEEccC
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVE-ELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKT 164 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 164 (550)
...+..++|||||++|+...... .|.+.+...++....... ....+. . .+.+++ .++....+
T Consensus 121 ~~~V~~l~~s~~~~~l~s~~~dg----~v~i~~~~~~~~~~~~~~h~~~v~~-----~-------~~~~~~~~~~~~~~~ 184 (388)
T d1erja_ 121 DLYIRSVCFSPDGKFLATGAEDR----LIRIWDIENRKIVMILQGHEQDIYS-----L-------DYFPSGDKLVSGSGD 184 (388)
T ss_dssp CCBEEEEEECTTSSEEEEEETTS----CEEEEETTTTEEEEEECCCSSCEEE-----E-------EECTTSSEEEEEETT
T ss_pred CCCEEEEEECCCCCcceeccccc----ccccccccccccccccccccccccc-----c-------ccccccccccccccc
Confidence 44678899999999887765432 267778887765443321 111110 0 122222 34443333
Q ss_pred CccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeC-------C
Q 008873 165 GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLT-------N 237 (550)
Q Consensus 165 g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt-------~ 237 (550)
| .+.+.+..+..........-.......+..+++.|+..+ .++ .|+..+.. .+. ....+. .
T Consensus 185 ~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~----~i~i~~~~-~~~----~~~~~~~~~~~~~~ 252 (388)
T d1erja_ 185 R--TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS-LDR----AVRVWDSE-TGF----LVERLDSENESGTG 252 (388)
T ss_dssp S--EEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEE-TTS----CEEEEETT-TCC----EEEEEC------CC
T ss_pred e--eeeeeeccccccccccccccccccccccCCCCCeEEEEc-CCC----eEEEeecc-cCc----cceeeccccccccC
Confidence 3 456666655443322222111222333445666555443 333 23333441 121 111111 1
Q ss_pred -CCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 238 -GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 238 -~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
......+.|+|+++.|+....+ ..+.+.++.++.
T Consensus 253 h~~~v~~l~~s~~~~~l~s~~~d----~~i~iwd~~~~~ 287 (388)
T d1erja_ 253 HKDSVYSVVFTRDGQSVVSGSLD----RSVKLWNLQNAN 287 (388)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT----SEEEEEEC----
T ss_pred CCCCEEEEEECCCCCEEEEEECC----CcEEEEeccCCc
Confidence 1236677899999987654332 377777776554
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=2.4e-05 Score=69.57 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=63.2
Q ss_pred CCceEEEEEcCCCCceeecccccccchhHhHHHHhC--CcEEEEECCCCCCCCchhhHHHHhhccCCCchHHHHHHHHHH
Q 008873 326 PPYKTLISVYGGPCVQLVCDSWINTVDMRAQYLRSK--GILVWKLDNRGTARRGLKFEASIKHNCGRIDAEDQLTGAEWL 403 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~l~~~--G~~vv~~d~rG~g~~~~~~~~~~~~~~~~~~~~D~~~~~~~l 403 (550)
.+.|+| ++||-..+.... ..+..+.+.+.++ |+.|.++++.....+.. ...... .+.++.+.+...
T Consensus 4 ~P~PVV-LvHGlg~s~~~~----~~m~~l~~~l~~~~pG~~V~~l~~g~~~~~~~--~~~~~~-----~~~~~~e~v~~~ 71 (279)
T d1ei9a_ 4 APLPLV-IWHGMGDSCCNP----LSMGAIKKMVEKKIPGIHVLSLEIGKTLREDV--ENSFFL-----NVNSQVTTVCQI 71 (279)
T ss_dssp SSCCEE-EECCTTCCSCCT----TTTHHHHHHHHHHSTTCCEEECCCSSSHHHHH--HHHHHS-----CHHHHHHHHHHH
T ss_pred CCCcEE-EECCCCCCCCCh----HHHHHHHHHHHHHCCCeEEEEEEcCCCccccc--ccchhh-----hHHHHHHHHHHH
Confidence 456765 589954432111 1234456667655 99999999754321110 111111 144555554444
Q ss_pred HHcCCCCCCceEEEEechhHHHHHHHHhhCCC-eeEEEEEcCC
Q 008873 404 IKQGLAKVGHIGLYGWSYGGYLSAITLARFPD-VFQCAVSGAP 445 (550)
Q Consensus 404 ~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~~-~~~~~v~~~~ 445 (550)
+++-..-.++|-++||||||.++-.++.+.+. .+...|+.++
T Consensus 72 I~~~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs 114 (279)
T d1ei9a_ 72 LAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp HHSCGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred HHhccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence 44321234689999999999999999988764 4677777654
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.89 E-value=0.00019 Score=68.94 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=76.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeeccccc---cc-----chh--HhHHHHhCCcEEEEEC-CCCCCCC
Q 008873 308 GTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSWI---NT-----VDM--RAQYLRSKGILVWKLD-NRGTARR 376 (550)
Q Consensus 308 g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~-----~~~--~~~~l~~~G~~vv~~d-~rG~g~~ 376 (550)
+..+..|++..... +++.|+|+++-|||++..+...+. |. ... ....+. +=..+|.+| +-|.|-|
T Consensus 27 ~~~lfyw~~~s~~~---~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~-~~anllfiD~PvGtGfS 102 (421)
T d1wpxa1 27 DKHFFFWTFESRND---PAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWN-SNATVIFLDQPVNVGFS 102 (421)
T ss_dssp CCEEEEEEECCSSC---TTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGG-GSSEEEEECCSTTSTTC
T ss_pred CceEEEEEEEeCCC---CCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCcccc-cccCEEEEecCCCCCce
Confidence 56788888865543 256799999999999865321111 10 000 000111 226899999 5577755
Q ss_pred chhhHHHHhhccCCCchHHHHHHHHHHHH-cCCC--CCCceEEEEechhHHHHHHHHhh---CC---CeeEEEEEcCCcC
Q 008873 377 GLKFEASIKHNCGRIDAEDQLTGAEWLIK-QGLA--KVGHIGLYGWSYGGYLSAITLAR---FP---DVFQCAVSGAPVT 447 (550)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~--d~~~i~i~G~S~GG~~a~~~~~~---~~---~~~~~~v~~~~~~ 447 (550)
-..-.. ...+ ....+|+.++++...+ .+.. ...++.|.|.||||..+-.+|.+ .. --+++++++.|++
T Consensus 103 y~~~~~-~~~~--~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~ 179 (421)
T d1wpxa1 103 YSGSSG-VSNT--VAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLT 179 (421)
T ss_dssp BCSSCC-CCSH--HHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCC
T ss_pred ecCCcc-ccch--HHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCcc
Confidence 211000 0000 0124455555554433 3432 23579999999999988766642 22 2478999999987
Q ss_pred C
Q 008873 448 S 448 (550)
Q Consensus 448 ~ 448 (550)
|
T Consensus 180 d 180 (421)
T d1wpxa1 180 D 180 (421)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.86 E-value=0.0011 Score=60.56 Aligned_cols=217 Identities=10% Similarity=-0.127 Sum_probs=111.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEEEEcccCCCCCC
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSWMDLQCGGTDQN 84 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 84 (550)
.++.|||||++++....+......... .....+.++|..+++....-..
T Consensus 85 ~~v~~s~dg~~l~~~~~~~~~~~~~~~------------------------~~~~~~~~~d~~~~~~~~~~~~------- 133 (337)
T d1pbyb_ 85 FGAALSPDGKTLAIYESPVRLELTHFE------------------------VQPTRVALYDAETLSRRKAFEA------- 133 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEE------------------------ECCCEEEEEETTTTEEEEEEEC-------
T ss_pred eeEEEcCCCcEEEEeecCCcceeeecc------------------------ccccceeeccccCCeEEEeccc-------
Confidence 578899999998776544221110000 0113567899999876543111
Q ss_pred CCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC----ceeeccCccccCCCCCccCCCcE--E
Q 008873 85 YDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD----SWVNLHDCFTPLDKGVTKYSGGF--I 158 (550)
Q Consensus 85 ~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~ 158 (550)
......+.|||||+.++... . ++..++..+++.......... .+......+.+. ......+ .
T Consensus 134 --~~~~~~~~~s~dg~~l~~~~-~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 201 (337)
T d1pbyb_ 134 --PRQITMLAWARDGSKLYGLG-R-----DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ----HESSGVMATP 201 (337)
T ss_dssp --CSSCCCEEECTTSSCEEEES-S-----SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC----CTTTTEEEEE
T ss_pred --cCCceEEEEcCCCCEEEEEc-C-----CcceeeeecCcEEEEeecCCccccceecCCcceeecc----ccccceeeee
Confidence 12234578999999776542 2 256678888875443221111 000000001010 0011111 1
Q ss_pred EEEcc--C-------CccEEEEEeCCCceeecc--cccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCC
Q 008873 159 WASEK--T-------GFRHLYLHDINGTCLGPI--TEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNH 227 (550)
Q Consensus 159 ~~s~~--~-------g~~~l~~~~~~~~~~~~l--T~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~ 227 (550)
..... . ....+++++...++.... ......... ..++++++.++... ..+..+++. .+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~i~v~d~~-~~~- 271 (337)
T d1pbyb_ 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS-TAVNPAKTRAFGAY-------NVLESFDLE-KNA- 271 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE-EEECTTSSEEEEEE-------SEEEEEETT-TTE-
T ss_pred eeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEE-EEecccceEEEEcc-------ccEEEEECC-CCc-
Confidence 11111 0 124567777665543322 111111122 23677887776442 245556762 221
Q ss_pred CCCCCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 228 TLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 228 ~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
....+........+.|||||++|+.... -..|.++|.++++.+..+.
T Consensus 272 ---~~~~~~~~~~~~~~~~s~dG~~l~v~~~----~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 272 ---SIKRVPLPHSYYSVNVSTDGSTVWLGGA----LGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ---EEEEEECSSCCCEEEECTTSCEEEEESB----SSEEEEEETTTCCEEEEEE
T ss_pred ---EEEEEcCCCCEEEEEECCCCCEEEEEeC----CCcEEEEECCCCcEEEEEE
Confidence 2333433444667899999998865422 2479999999888776663
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.79 E-value=0.0012 Score=63.27 Aligned_cols=178 Identities=12% Similarity=0.065 Sum_probs=90.1
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-ceeeccCccccCCCCCccCCCcEEEEEccCCc
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD-SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGF 166 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~ 166 (550)
.....+.++|||++++...... ..+..++..+++.......... .+.. ...+ .....+.++.....+.
T Consensus 207 ~~~~~~~~~~~g~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~d 275 (426)
T d1hzua2 207 PFLADGGWDSSHRYFMTAANNS---NKVAVIDSKDRRLSALVDVGKTPHPGR---GANF-----VHPKYGPVWSTSHLGD 275 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTC---SEEEEEETTTTEEEEEEECSSCCCCSC---CEEE-----EETTTEEEEEEECTTT
T ss_pred CccEeeeECCCCcEEEeeeecc---cceeeeecccccEEEEeccCCcccccc---eeee-----ecCCCCceEEeccCCC
Confidence 3456689999999776654332 3477888998887665543211 0000 0000 0011222222222222
Q ss_pred cEEEEEeCCC--------ceeecccccCeEEEEEEeEeecCCEEEEEEcCC--CCceeEEEEEEeCCCCCCCCCCCeee-
Q 008873 167 RHLYLHDING--------TCLGPITEGDWMVEQIVGVNEASGQVYFTGTLD--GPLESHLYCAKLYPDWNHTLEAPVKL- 235 (550)
Q Consensus 167 ~~l~~~~~~~--------~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~--~~~~~~l~~v~~~~~g~~~~~~~~~l- 235 (550)
..+...+... ...+.|......+.. ..++|||+.|++..... +.....|...++. ++. ...++
T Consensus 276 ~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~-v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~-t~~----~~~~~~ 349 (426)
T d1hzua2 276 GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF-IKTHPKSSHLYVDTTFNPDARISQSVAVFDLK-NLD----AKYQVL 349 (426)
T ss_dssp CEEEEEECCTTTCTTTBTSEEEEEECSSSCCCC-EECCTTCSEEEECCTTCSSHHHHTCEEEEETT-CTT----SCCEEE
T ss_pred ceEEEeeccccccccccceEeEEEecCCCceeE-EEcCCCCceEEEeecCCCCcccCCEEEEEECC-CCC----cCeEEe
Confidence 3333333222 112222221111222 34899999998654321 1111234445662 332 12222
Q ss_pred --------CCC-CceEEEEECCCCCEEEEeecC-CCCCCEEEEEEcCCCceeEeccC
Q 008873 236 --------TNG-KGKHVAVLDHNMRNFVDFHDS-LDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 236 --------t~~-~~~~~~~~s~dg~~l~~~~s~-~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
... .....+.|||||+++++.... ......|.+.|.++++....+..
T Consensus 350 ~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 350 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp CHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECC
Confidence 121 225667899999998776543 34556799999999887666654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.76 E-value=0.00025 Score=66.61 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=31.3
Q ss_pred cEEEEEeCCCce-eecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 167 RHLYLHDINGTC-LGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 167 ~~l~~~~~~~~~-~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
.+|+++|..+++ ...+..+. .+..+ .|||||+.++|.++..+ ..|+.+|.
T Consensus 294 ~~v~v~D~~t~~~~~~~~~~~-~~~~~-a~spDG~~~ly~s~~~~---~~v~v~D~ 344 (368)
T d1mdah_ 294 ENTSSVTASVGQTSGPISNGH-DSDAI-IAAQDGASDNYANSAGT---EVLDIYDA 344 (368)
T ss_dssp EEEEEEESSSCCEEECCEEEE-EECEE-EECCSSSCEEEEEETTT---TEEEEEES
T ss_pred ceEEEEECCCCcEeEEecCCC-ceeEE-EECCCCCEEEEEEeCCC---CeEEEEEC
Confidence 689999987764 33444332 23334 49999987655555433 25777787
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=97.70 E-value=0.00053 Score=66.81 Aligned_cols=138 Identities=14% Similarity=0.015 Sum_probs=72.5
Q ss_pred cEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---ccc-chh------HhHHHHhCCcEEEEECCC-CCCCCc
Q 008873 309 TVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INT-VDM------RAQYLRSKGILVWKLDNR-GTARRG 377 (550)
Q Consensus 309 ~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~-~~~------~~~~l~~~G~~vv~~d~r-G~g~~~ 377 (550)
..+..|++..... ......|+||++-|||++..+...| ++. +.. ....+. +-..++.+|.+ |.|.|=
T Consensus 49 ~~~ffw~fe~~~~-~~~~~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn-~~an~lfIDqPvGvGfSy 126 (483)
T d1ac5a_ 49 LEYFFWKFTNNDS-NGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWI-SKGDLLFIDQPTGTGFSV 126 (483)
T ss_dssp CEEEEEEEECSCS-GGGSSCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGG-GTSEEEEECCSTTSTTCS
T ss_pred ceEEEEEEEecCC-CCCCCCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCccc-ccCCEEEEeCCCCcCeee
Confidence 4566676754332 1112359999999999986532211 110 000 000111 23678999964 776552
Q ss_pred hhhHHHHhhcc--CCCc----hHHHHHHHH-HHHHcCCCCCCceEEEEechhHHHHHHHHhhC------------CCeeE
Q 008873 378 LKFEASIKHNC--GRID----AEDQLTGAE-WLIKQGLAKVGHIGLYGWSYGGYLSAITLARF------------PDVFQ 438 (550)
Q Consensus 378 ~~~~~~~~~~~--~~~~----~~D~~~~~~-~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~------------~~~~~ 438 (550)
..-......+. .... ..|+..+++ |+...+..-..++.|+|.||||.-+-.++..- .--++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLk 206 (483)
T d1ac5a_ 127 EQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLK 206 (483)
T ss_dssp SCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEE
T ss_pred cCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcccce
Confidence 11000000000 0011 233333333 33444555567899999999998776665421 12478
Q ss_pred EEEEcCCcCC
Q 008873 439 CAVSGAPVTS 448 (550)
Q Consensus 439 ~~v~~~~~~~ 448 (550)
+++++.|+++
T Consensus 207 Gi~IGNg~~d 216 (483)
T d1ac5a_ 207 ALLIGNGWID 216 (483)
T ss_dssp EEEEEEECCC
T ss_pred eeeecCCccC
Confidence 9888888765
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.69 E-value=0.0042 Score=55.48 Aligned_cols=38 Identities=5% Similarity=0.031 Sum_probs=26.3
Q ss_pred ceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 240 GKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 240 ~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
....+.++|++++|+....+ ..+.+.++.+++.+..+.
T Consensus 249 ~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~ 286 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILSCADD----KTLRVWDYKNKRCMKTLN 286 (317)
T ss_dssp CEEEEEECSSSSCEEEEETT----TEEEEECCTTSCCCEEEE
T ss_pred CEEEEEECCCCCEEEEEECC----CeEEEEECCCCcEEEEEc
Confidence 35667899999887654433 378888887777555543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.55 E-value=0.017 Score=52.18 Aligned_cols=191 Identities=13% Similarity=0.052 Sum_probs=96.1
Q ss_pred EEEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 59 VRLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 59 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.+|+.+|.++++...+..... ......-..+.+++||..++..... ..|.+++.+++....+.......
T Consensus 46 g~I~r~d~~~~~~~~~~~~~~----~~~~g~P~Gl~~~~dg~~l~vad~~----~~i~~~~~~g~~~~~~~~~~~g~--- 114 (314)
T d1pjxa_ 46 GEILRIDLKTGKKTVICKPEV----NGYGGIPAGCQCDRDANQLFVADMR----LGLLVVQTDGTFEEIAKKDSEGR--- 114 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEE----TTEECCEEEEEECSSSSEEEEEETT----TEEEEEETTSCEEECCSBCTTSC---
T ss_pred CEEEEEECCCCcEEEEECCcc----ccCCCcceeEEEeCCCCEEEEEECC----CeEEEEeCCCcEEEEEecccccc---
Confidence 358899999988766543210 0111123457899999866554322 24889998877644432221110
Q ss_pred ccCccc-cCCCCCccCCCcEEEEEccCC--------------ccEEEEEeCCCceeecccccCeEEEEEEeEeecCC---
Q 008873 139 LHDCFT-PLDKGVTKYSGGFIWASEKTG--------------FRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASG--- 200 (550)
Q Consensus 139 ~~~~~~-~~~~~~~~~~~~~~~~s~~~g--------------~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~--- 200 (550)
.+. |.+ ...++++-+|+++..+ ...||+++.++...+.++.-.. ...+ .|+++++
T Consensus 115 ---~~~~pnd--l~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~-pNGi-~~~~d~d~~~ 187 (314)
T d1pjxa_ 115 ---RMQGCND--CAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQF-PNGI-AVRHMNDGRP 187 (314)
T ss_dssp ---BCBCCCE--EEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESS-EEEE-EEEECTTSCE
T ss_pred ---ccCCCcE--EEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcce-eeee-EECCCCCcce
Confidence 011 100 0124555455554321 2478999887753333322111 1233 3888765
Q ss_pred -EEEEEEcCCCCceeEEEEEEeCCCCCCCCCC-CeeeCCC--CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCc
Q 008873 201 -QVYFTGTLDGPLESHLYCAKLYPDWNHTLEA-PVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGS 275 (550)
Q Consensus 201 -~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~-~~~lt~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~ 275 (550)
.||+.-... ..|+++++..++.....+ ...+... .+-..+.+..+|..++..... ..|++++.++++
T Consensus 188 ~~lyv~d~~~----~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~----g~I~~~dp~~g~ 258 (314)
T d1pjxa_ 188 YQLIVAETPT----KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS----SHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEEEETTT----TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT----TEEEEECTTCBS
T ss_pred eEEEEEeecc----cceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCC----CEEEEEeCCCCE
Confidence 577665433 467777763233210000 0111111 123445778888754433322 478888875554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.0012 Score=60.31 Aligned_cols=176 Identities=9% Similarity=0.054 Sum_probs=82.5
Q ss_pred EEEEEECCCC-ceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGG-PVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.|++|++++. ..+.+... +....+..++|||||+.|+.. .+..+.-.+|.++..++..+.+...... +.
T Consensus 15 ~I~v~~~~~~~~l~~~~~~-------~~~~~v~~la~spDG~~L~v~-~~~d~~i~~~~i~~~~~~~~~~~~~~~~-~~- 84 (333)
T d1ri6a_ 15 QIHVWNLNHEGALTLTQVV-------DVPGQVQPMVVSPDKRYLYVG-VRPEFRVLAYRIAPDDGALTFAAESALP-GS- 84 (333)
T ss_dssp EEEEEEECTTSCEEEEEEE-------ECSSCCCCEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEEEEEEEECS-SC-
T ss_pred cEEEEEEcCCCCeEEEEEE-------cCCCCEeEEEEeCCCCEEEEE-ECCCCeEEEEEEeCCCCcEEEeeecccC-CC-
Confidence 4677777653 33333221 223445678999999988654 4443444566676666655554432211 10
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCCceee---cccccCeEEEEEEeEeecCCEEEEEEcCCCCcee
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDINGTCLG---PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLES 214 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~~~~~---~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~ 214 (550)
+. ...+++|+ +++++...+ ..+..++.+..... ....+...+... .+++|++.++.......
T Consensus 85 ------p~--~l~~spDg~~l~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~v-~~s~d~~~~~~~~~~~~---- 150 (333)
T d1ri6a_ 85 ------LT--HISTDHQGQFVFVGSYNA-GNVSVTRLEDGLPVGVVDVVEGLDGCHSA-NISPDNRTLWVPALKQD---- 150 (333)
T ss_dssp ------CS--EEEECTTSSEEEEEETTT-TEEEEEEEETTEEEEEEEEECCCTTBCCC-EECTTSSEEEEEEGGGT----
T ss_pred ------ce--EEEEcCCCCEEeecccCC-CceeeeccccccceecccccCCCccceEE-Eeeecceeeeccccccc----
Confidence 00 01245554 666665433 23333332222211 111111112222 48999998887766443
Q ss_pred EEEEEEeCCCCCCCCCCC--eeeCCCCceEEEEECCCCCEEEEeecC
Q 008873 215 HLYCAKLYPDWNHTLEAP--VKLTNGKGKHVAVLDHNMRNFVDFHDS 259 (550)
Q Consensus 215 ~l~~v~~~~~g~~~~~~~--~~lt~~~~~~~~~~s~dg~~l~~~~s~ 259 (550)
.+...+............ .....+.......+++++..++.....
T Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~ 197 (333)
T d1ri6a_ 151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197 (333)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc
Confidence 333334411211000000 111112223456789998877655433
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.45 E-value=0.02 Score=50.73 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=86.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecC-----
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELD----- 134 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~----- 134 (550)
.+.++|+.+++.... + .........+.|+||++.++...... .|...+..+++..........
T Consensus 124 ~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~l~~~~~d~----~v~~~~~~~~~~~~~~~~~~~~i~~~ 191 (317)
T d1vyhc1 124 TIKMWEVQTGYCVKT-F-------TGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRHVVECI 191 (317)
T ss_dssp EEEEEETTTCCEEEE-E-------ECCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred ceeEeecccceeeeE-E-------ccCCCcceeeecccCCCEEEEEeCCC----eEEEEeeccceeeEEEecCCCCceEE
Confidence 357789988765432 1 12234567789999999887665332 267777777765433221111
Q ss_pred ceeeccCccccCC--CC---CccCCCcEEEEEccCCccEEEEEeCCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 135 SWVNLHDCFTPLD--KG---VTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 135 ~~~~~~~~~~~~~--~~---~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
.|.+......... .. .....+.+++....+| .|.+++..+++. ..+....-.+... .++++++.|+..+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~- 267 (317)
T d1vyhc1 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK--TIKMWDVSTGMCLMTLVGHDNWVRGV-LFHSGGKFILSCAD- 267 (317)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTS--EEEEEETTTTEEEEEEECCSSCEEEE-EECSSSSCEEEEET-
T ss_pred EEeeccccceeeccccceeeeeccCCceeEeccCCC--EEEEEECCCCcEEEEEeCCCCCEEEE-EECCCCCEEEEEEC-
Confidence 1111100000000 00 0001112333333333 566777666543 3343333334444 48999987765543
Q ss_pred CCCceeEEEEEEeCCCCCCCCCCCeeeCC-CCceEEEEECCCCCEEEEe
Q 008873 209 DGPLESHLYCAKLYPDWNHTLEAPVKLTN-GKGKHVAVLDHNMRNFVDF 256 (550)
Q Consensus 209 ~~~~~~~l~~v~~~~~g~~~~~~~~~lt~-~~~~~~~~~s~dg~~l~~~ 256 (550)
++ .|...++. .+. ....+.. ......+.|+||++.|+..
T Consensus 268 dg----~i~iwd~~-~~~----~~~~~~~h~~~V~~~~~s~~~~~l~s~ 307 (317)
T d1vyhc1 268 DK----TLRVWDYK-NKR----CMKTLNAHEHFVTSLDFHKTAPYVVTG 307 (317)
T ss_dssp TT----EEEEECCT-TSC----CCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred CC----eEEEEECC-CCc----EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 33 34444652 232 3444543 3346777899999877643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.033 Score=48.81 Aligned_cols=160 Identities=14% Similarity=0.027 Sum_probs=92.7
Q ss_pred EEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccC-CCcEEEEEccCCccEEEE
Q 008873 93 VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKY-SGGFIWASEKTGFRHLYL 171 (550)
Q Consensus 93 ~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~g~~~l~~ 171 (550)
++.-+-++.|+++ +... ..|.++++++...+.+....... |.-. ..+ ..+++|.++.+....|++
T Consensus 82 lAvD~~~~~lY~~-d~~~--~~I~v~~~~g~~~~~~~~~~~~~-----P~~l------~vd~~~g~ly~~~~~~~~~I~r 147 (266)
T d1ijqa1 82 LAVDWIHSNIYWT-DSVL--GTVSVADTKGVKRKTLFRENGSK-----PRAI------VVDPVHGFMYWTDWGTPAKIKK 147 (266)
T ss_dssp EEEETTTTEEEEE-ETTT--TEEEEEETTSSSEEEEEECTTCC-----EEEE------EEETTTTEEEEEECSSSCEEEE
T ss_pred EEEeeccceEEEE-ecCC--CEEEeEecCCceEEEEEcCCCCC-----cceE------EEEcccCeEEEeccCCCcceeE
Confidence 4454455555544 4332 35999999988876665532110 0000 112 356888887655678999
Q ss_pred EeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee-CCCCc-eEEEEECC
Q 008873 172 HDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-TNGKG-KHVAVLDH 248 (550)
Q Consensus 172 ~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l-t~~~~-~~~~~~s~ 248 (550)
.+++|...+.|..... ...++ .+++.+++||++-... ..|.++++ +|. ..+.+ ....+ .+...++.
T Consensus 148 ~~~dGs~~~~l~~~~~~~p~gl-~iD~~~~~lYw~d~~~----~~I~~~~~--dG~----~~~~~~~~~~~~~~p~~lav 216 (266)
T d1ijqa1 148 GGLNGVDIYSLVTENIQWPNGI-TLDLLSGRLYWVDSKL----HSISSIDV--NGG----NRKTILEDEKRLAHPFSLAV 216 (266)
T ss_dssp EETTSCCEEEEECSSCSCEEEE-EEETTTTEEEEEETTT----TEEEEEET--TSC----SCEEEEECTTTTSSEEEEEE
T ss_pred eccCCCceecccccccceeeEE-EeeccccEEEEecCCc----CEEEEEEC--CCC----CEEEEEeCCCcccccEEEEE
Confidence 9999987776654321 22344 4888899999985543 47889998 665 22232 22221 22223344
Q ss_pred CCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 249 NMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 249 dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
++.+|.++-.. ...|++++..+|+..+.+
T Consensus 217 ~~~~ly~td~~---~~~I~~~~~~~g~~~~~~ 245 (266)
T d1ijqa1 217 FEDKVFWTDII---NEAIFSANRLTGSDVNLL 245 (266)
T ss_dssp ETTEEEEEETT---TTEEEEEETTTCCCCEEE
T ss_pred ECCEEEEEECC---CCeEEEEECCCCcceEEE
Confidence 45666655322 247888887777644444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.27 E-value=0.003 Score=57.77 Aligned_cols=164 Identities=9% Similarity=-0.001 Sum_probs=80.4
Q ss_pred ceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCC--cEEEEEccCC
Q 008873 88 EYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSG--GFIWASEKTG 165 (550)
Q Consensus 88 ~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~g 165 (550)
..+..++|+|||+.++......... +...+.++|+........ ...+.. . .++++ .++.....+|
T Consensus 116 ~~v~~v~~s~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~h-~~~v~~---~-------~~~~~~~~~~~~~~~d~ 182 (325)
T d1pgua1 116 GPISDISWDFEGRRLCVVGEGRDNF--GVFISWDSGNSLGEVSGH-SQRINA---C-------HLKQSRPMRSMTVGDDG 182 (325)
T ss_dssp SCEEEEEECTTSSEEEEEECCSSCS--EEEEETTTCCEEEECCSC-SSCEEE---E-------EECSSSSCEEEEEETTT
T ss_pred CcEEEEEECCCCCccceeeccccce--EEEEeecccccceeeeec-cccccc---c-------cccccccceEEEeeccc
Confidence 3567889999999887765433322 455566777643222111 111110 1 12222 2343333344
Q ss_pred ccEEEEEeCCCceee-cc-c--ccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCCc-
Q 008873 166 FRHLYLHDINGTCLG-PI-T--EGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGKG- 240 (550)
Q Consensus 166 ~~~l~~~~~~~~~~~-~l-T--~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~~- 240 (550)
.+.+++....+.. .+ + ...-.+... .|+||+..+++++..++. ..+| ++. .+. ....+.....
T Consensus 183 --~v~~~d~~~~~~~~~~~~~~~~~~~v~~v-~~~pd~~~~l~s~~~d~~--i~iw--d~~-~~~----~~~~l~~~~~~ 250 (325)
T d1pgua1 183 --SVVFYQGPPFKFSASDRTHHKQGSFVRDV-EFSPDSGEFVITVGSDRK--ISCF--DGK-SGE----FLKYIEDDQEP 250 (325)
T ss_dssp --EEEEEETTTBEEEEEECSSSCTTCCEEEE-EECSTTCCEEEEEETTCC--EEEE--ETT-TCC----EEEECCBTTBC
T ss_pred --ccccccccccccceecccccCCCCccEEe-eeccccceeccccccccc--eeee--eec-ccc----ccccccccccc
Confidence 3455565443321 11 1 112224444 489987667766666542 4555 552 221 1222221111
Q ss_pred ----eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEecc
Q 008873 241 ----KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLY 281 (550)
Q Consensus 241 ----~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~ 281 (550)
..++.+ +||++|+....+ ..+.+.++.+++.++.+.
T Consensus 251 v~~~~~s~~~-~dg~~l~s~s~D----~~i~iwd~~~~~~~~~~~ 290 (325)
T d1pgua1 251 VQGGIFALSW-LDSQKFATVGAD----ATIRVWDVTTSKCVQKWT 290 (325)
T ss_dssp CCSCEEEEEE-SSSSEEEEEETT----SEEEEEETTTTEEEEEEE
T ss_pred cccceeeeec-cCCCEEEEEeCC----CeEEEEECCCCCEEEEEE
Confidence 222223 688877644332 378888998887665544
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00055 Score=66.33 Aligned_cols=141 Identities=14% Similarity=0.054 Sum_probs=83.1
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCceEEEEEcCCCCceeecccc---ccc-ch-----h--HhHHHHhCCcEEEEECCC
Q 008873 303 IQANDGTVLYGALYKPDESRYGPPPYKTLISVYGGPCVQLVCDSW---INT-VD-----M--RAQYLRSKGILVWKLDNR 371 (550)
Q Consensus 303 ~~~~~g~~l~~~~~~P~~~~~~~~~~P~vv~~hGg~~~~~~~~~~---~~~-~~-----~--~~~~l~~~G~~vv~~d~r 371 (550)
++..++..+..|++..... +++.|+++++-|||++..+.-.+ ++. .+ . ....+. +-..+|.+|.+
T Consensus 26 l~~~~~~~lffw~~~s~~~---~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~-~~anllfIDqP 101 (452)
T d1ivya_ 26 LKSSGSKHLHYWFVESQKD---PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWN-LIANVLYLESP 101 (452)
T ss_dssp EECSTTEEEEEEEECCSSC---GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGG-GSSEEEEECCS
T ss_pred eecCCCceEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchh-cccCEEEEecC
Confidence 3455677899998865542 24679999999999986543111 110 00 0 000111 22678999964
Q ss_pred -CCCCCchhhHHHHhhccCCCchHHHHHHH-HHHHHcCCCCCCceEEEEechhHHHHHHHHhh---C-CCeeEEEEEcCC
Q 008873 372 -GTARRGLKFEASIKHNCGRIDAEDQLTGA-EWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR---F-PDVFQCAVSGAP 445 (550)
Q Consensus 372 -G~g~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~---~-~~~~~~~v~~~~ 445 (550)
|.|.|-..-.. ...+. .....|+.+++ +++...+.....++.|.|.||||..+-.++.. . .-.++++++.+|
T Consensus 102 vGtGfS~~~~~~-~~~~~-~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng 179 (452)
T d1ivya_ 102 AGVGFSYSDDKF-YATND-TEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNG 179 (452)
T ss_dssp TTSTTCEESSCC-CCCBH-HHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESC
T ss_pred CCcccccCCCCC-CCCCc-HHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCC
Confidence 88765221000 00000 01134554444 45555555566789999999999988777643 2 235899999999
Q ss_pred cCCc
Q 008873 446 VTSW 449 (550)
Q Consensus 446 ~~~~ 449 (550)
+++.
T Consensus 180 ~~d~ 183 (452)
T d1ivya_ 180 LSSY 183 (452)
T ss_dssp CSBH
T ss_pred ccCc
Confidence 8763
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.22 E-value=0.016 Score=51.57 Aligned_cols=111 Identities=10% Similarity=0.027 Sum_probs=60.2
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCcc
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFR 167 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~ 167 (550)
....++|+||++.++...... .|...++.+++...+........+.. . .+++++ +++....+|
T Consensus 138 ~~~~~~~s~~~~~l~~g~~dg----~i~~~d~~~~~~~~~~~~~~~~~i~~---~-------~~~~~~~~l~~~~~d~-- 201 (299)
T d1nr0a2 138 NSSCVALSNDKQFVAVGGQDS----KVHVYKLSGASVSEVKTIVHPAEITS---V-------AFSNNGAFLVATDQSR-- 201 (299)
T ss_dssp CEEEEEECTTSCEEEEEETTS----EEEEEEEETTEEEEEEEEECSSCEEE---E-------EECTTSSEEEEEETTS--
T ss_pred ccccccccccccccccccccc----cccccccccccccccccccccccccc---c-------cccccccccccccccc--
Confidence 346689999999887654332 47777777777655443322222211 1 123443 555555555
Q ss_pred EEEEEeCCCce-ee---cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 168 HLYLHDINGTC-LG---PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 168 ~l~~~~~~~~~-~~---~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
.|++++..++. .. .+....-.+... .|+|+|+.|+..+.+ + ...|| ++
T Consensus 202 ~i~~~~~~~~~~~~~~~~~~~h~~~v~~l-~~s~~~~~l~sgs~d-g--~i~iw--d~ 253 (299)
T d1nr0a2 202 KVIPYSVANNFELAHTNSWTFHTAKVACV-SWSPDNVRLATGSLD-N--SVIVW--NM 253 (299)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEE-EECTTSSEEEEEETT-S--CEEEE--ET
T ss_pred ccccccccccccccccccccccccccccc-cccccccceEEEcCC-C--EEEEE--EC
Confidence 46666654432 21 222222334444 499999877765543 3 24555 55
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.07 E-value=0.017 Score=52.39 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=53.9
Q ss_pred EEEeCCCc-eeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC----CCceEEE
Q 008873 170 YLHDINGT-CLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN----GKGKHVA 244 (550)
Q Consensus 170 ~~~~~~~~-~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~----~~~~~~~ 244 (550)
.+++.+++ ....+......+.... |+++++.+++++..++. ..+| +.. .+. ....+.. ......+
T Consensus 142 ~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~~~~~~d~~--v~~~--d~~-~~~----~~~~~~~~~~~~~~v~~v 211 (325)
T d1pgua1 142 VFISWDSGNSLGEVSGHSQRINACH-LKQSRPMRSMTVGDDGS--VVFY--QGP-PFK----FSASDRTHHKQGSFVRDV 211 (325)
T ss_dssp EEEETTTCCEEEECCSCSSCEEEEE-ECSSSSCEEEEEETTTE--EEEE--ETT-TBE----EEEEECSSSCTTCCEEEE
T ss_pred EEEeecccccceeeeeccccccccc-ccccccceEEEeecccc--cccc--ccc-ccc----cceecccccCCCCccEEe
Confidence 33344443 3344443344455544 89999887777766542 4444 431 111 1111111 1225667
Q ss_pred EECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 245 VLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 245 ~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
.|+||+..++++.+.. ..+.++++.+++.++.+..
T Consensus 212 ~~~pd~~~~l~s~~~d---~~i~iwd~~~~~~~~~l~~ 246 (325)
T d1pgua1 212 EFSPDSGEFVITVGSD---RKISCFDGKSGEFLKYIED 246 (325)
T ss_dssp EECSTTCCEEEEEETT---CCEEEEETTTCCEEEECCB
T ss_pred eeccccceeccccccc---cceeeeeeccccccccccc
Confidence 8999865555554432 3688889888887666653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.07 E-value=0.0028 Score=57.60 Aligned_cols=129 Identities=13% Similarity=0.061 Sum_probs=70.7
Q ss_pred EEEEEECCCCceE-EEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVS-WMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
+|.++|+++++.. .+.+. ........+++||||++++...... ..|+++|+++|+...-.......-..
T Consensus 12 ~v~v~D~~s~~~~~~i~~~-------~~~~~~~~i~~spDg~~l~v~~~~~---~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 12 KLVVIDTEKMAVDKVITIA-------DAGPTPMVPMVAPGGRIAYATVNKS---ESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETTTTEEEEEEECT-------TCTTCCCCEEECTTSSEEEEEETTT---TEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCeEEEEEECC-------CCCCCccEEEECCCCCEEEEEECCC---CeEEEEECCCCcEEEEEecCCCcccc
Confidence 5889999998765 34432 1223345689999999776554332 25999999999875433322211100
Q ss_pred ccCccccCCCCCccCCCc-EEEEEccC----------CccEEEEEeCCCceeec-ccccCeEEEEEEeEeecCCEEEEEE
Q 008873 139 LHDCFTPLDKGVTKYSGG-FIWASEKT----------GFRHLYLHDINGTCLGP-ITEGDWMVEQIVGVNEASGQVYFTG 206 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~s~~~----------g~~~l~~~~~~~~~~~~-lT~~~~~~~~~~~~s~dg~~l~f~~ 206 (550)
.. .. ...+++++ .++..... +...+.+++..+++... +..+.. +... .+++||+.++..+
T Consensus 82 ~~--~~----~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~-~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 82 KS--LF----GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-ITML-AWARDGSKLYGLG 153 (337)
T ss_dssp EC--TT----CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-CCCE-EECTTSSCEEEES
T ss_pred cc--ee----eEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC-ceEE-EEcCCCCEEEEEc
Confidence 00 00 01234443 44433221 23567777876665432 222221 2233 4899999888754
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.04 E-value=0.00091 Score=62.13 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=29.0
Q ss_pred CCceEEEEEcCCCCc----eeecccccccchhHhHHHHhCCcEEEEECCCCC
Q 008873 326 PPYKTLISVYGGPCV----QLVCDSWINTVDMRAQYLRSKGILVWKLDNRGT 373 (550)
Q Consensus 326 ~~~P~vv~~hGg~~~----~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~ 373 (550)
.+||+|+ +||-.+. ....+.|........+.|...|+.|+++.....
T Consensus 6 ~~yPIVL-vHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p~ 56 (388)
T d1ku0a_ 6 NDAPIVL-LHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPL 56 (388)
T ss_dssp CCCCEEE-ECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCSS
T ss_pred CCCCEEE-eCCcccCCccccCcccccCCchhhhHHHHHhCCCEEEEeccCCc
Confidence 5788865 8994332 111233332112257789999999999998644
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.03 E-value=0.045 Score=48.94 Aligned_cols=149 Identities=10% Similarity=0.143 Sum_probs=74.4
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccE
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRH 168 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 168 (550)
....+.+.+||++++... . ...+|.++..++.................... .......++++ .+|.++. +...
T Consensus 114 ~~n~i~~~~~g~~~v~~~--~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ngi~~~~~-~l~~~~~-~~~~ 186 (302)
T d2p4oa1 114 FLNGITPLSDTQYLTADS--Y--RGAIWLIDVVQPSGSIWLEHPMLARSNSESVF-PAANGLKRFGN-FLYVSNT-EKML 186 (302)
T ss_dssp CEEEEEESSSSEEEEEET--T--TTEEEEEETTTTEEEEEEECGGGSCSSTTCCS-CSEEEEEEETT-EEEEEET-TTTE
T ss_pred ccceeEEccCCCEEeecc--c--cccceeeeccCCcceeEecCCccceeeccCcc-cccccccccCC-ceeeecC-CCCe
Confidence 456678999998654432 2 23699999998876554432211110000000 00000011222 4444443 3457
Q ss_pred EEEEeCCCcee----ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeee-C---CCCc
Q 008873 169 LYLHDINGTCL----GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKL-T---NGKG 240 (550)
Q Consensus 169 l~~~~~~~~~~----~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~l-t---~~~~ 240 (550)
|++++.++... ...+.+.. ...+ .+++||+ ||+.....+ .|++++. +|. ...+ + ...+
T Consensus 187 i~~~~~~~~~~~~~~~~~~~~~~-pdgi-a~d~dG~-l~va~~~~~----~V~~i~p--~G~-----~~~~~~~~~~~~~ 252 (302)
T d2p4oa1 187 LLRIPVDSTDKPGEPEIFVEQTN-IDDF-AFDVEGN-LYGATHIYN----SVVRIAP--DRS-----TTIIAQAEQGVIG 252 (302)
T ss_dssp EEEEEBCTTSCBCCCEEEEESCC-CSSE-EEBTTCC-EEEECBTTC----CEEEECT--TCC-----EEEEECGGGTCTT
T ss_pred EEeccccccccccccccccCCCC-Ccce-EECCCCC-EEEEEcCCC----cEEEECC--CCC-----EEEEEecCCCCCC
Confidence 88888655321 11111111 1123 4788885 777765543 4777776 553 2222 2 1123
Q ss_pred eEEEEE---CCCCCEEEEeec
Q 008873 241 KHVAVL---DHNMRNFVDFHD 258 (550)
Q Consensus 241 ~~~~~~---s~dg~~l~~~~s 258 (550)
-..++| ++|++.|+++.+
T Consensus 253 pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 253 STAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp EEEEEECCSTTTTTEEEEEEC
T ss_pred ceEEEEcCCCCCCCEEEEECC
Confidence 566788 678888766543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.98 E-value=0.092 Score=47.26 Aligned_cols=181 Identities=6% Similarity=-0.002 Sum_probs=93.4
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEec--CCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNR--SQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r--~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
.+..++..++....+... .........+.+.|||++++.-... ......+|+++.+++..+.+...-..
T Consensus 108 ~i~~~~~~~~~~~~~~~~------~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~--- 178 (319)
T d2dg1a1 108 GIFAATENGDNLQDIIED------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV--- 178 (319)
T ss_dssp EEEEECTTSCSCEEEECS------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS---
T ss_pred eEEEEcCCCceeeeeccC------CCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccce---
Confidence 455556665555443221 1112334567899999855443221 22345799999998887776543111
Q ss_pred eccCccccCCCCCccCCCc-EEEEEccCCccEEEEEeCCC--ceeeccc-------ccCeEEEEEEeEeecCCEEEEEEc
Q 008873 138 NLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYLHDING--TCLGPIT-------EGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~~~~~~--~~~~~lT-------~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
+....+++++ .+|+++. ....|++++++. ....... .+...-... .++.+|+ ||++..
T Consensus 179 ---------pnGia~s~dg~~lyvad~-~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl-~vD~~G~-l~Va~~ 246 (319)
T d2dg1a1 179 ---------ANGIALSTDEKVLWVTET-TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC-CIDSDDN-LYVAMY 246 (319)
T ss_dssp ---------EEEEEECTTSSEEEEEEG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE-EEBTTCC-EEEEEE
T ss_pred ---------eeeeeeccccceEEEecc-cCCceEEEEEcCCCceeccccceeeeccCCccceeee-eEcCCCC-EEEEEc
Confidence 0111345554 6677665 234688887543 2111111 011112233 3677775 776654
Q ss_pred CCCCceeEEEEEEeCCCCCCCCCCCeee--CCC-----CceEEEEECCCCCEEEEeecCCC--CCCEEEEEEc
Q 008873 208 LDGPLESHLYCAKLYPDWNHTLEAPVKL--TNG-----KGKHVAVLDHNMRNFVDFHDSLD--SPPRILLCSL 271 (550)
Q Consensus 208 ~~~~~~~~l~~v~~~~~g~~~~~~~~~l--t~~-----~~~~~~~~s~dg~~l~~~~s~~~--~p~~l~~~~~ 271 (550)
.. ..|.+++. +|. ....+ +.. ....++.+.+++..++.+.++.. ....||.++.
T Consensus 247 ~~----g~V~~~~p--~G~----~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 247 GQ----GRVLVFNK--RGY----PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp TT----TEEEEECT--TSC----EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CC----CEEEEECC--CCc----EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 43 35666665 453 12222 111 12356678888877766655433 2345777765
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.84 E-value=0.00077 Score=63.91 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=25.2
Q ss_pred CeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcC
Q 008873 232 PVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQ 272 (550)
Q Consensus 232 ~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~ 272 (550)
...++.+..-+.+.+||||++++..-. ..+.+.++|++
T Consensus 251 ~~~IPvgksPhGv~vSPDGkyl~~~~~---~~~tvsv~d~~ 288 (441)
T d1qnia2 251 TRYIPVPKNPHGLNTSPDGKYFIANGK---LSPTVSVIAID 288 (441)
T ss_dssp EEEECCBSSCCCEEECTTSCEEEEECT---TSSBEEEEEGG
T ss_pred EEEEeCCCCccCceECCCCCEEEEeCC---cCCcEEEEEee
Confidence 344555545677889999998765532 23478888874
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.79 E-value=0.19 Score=46.06 Aligned_cols=73 Identities=10% Similarity=-0.052 Sum_probs=35.4
Q ss_pred eEeecCCEEEEEEcC-CCCceeEEEEEEeCCCCCCCCCCCeee----CCCCceEEEEECC-CCCEEEEeecCCCCCCEEE
Q 008873 194 GVNEASGQVYFTGTL-DGPLESHLYCAKLYPDWNHTLEAPVKL----TNGKGKHVAVLDH-NMRNFVDFHDSLDSPPRIL 267 (550)
Q Consensus 194 ~~s~dg~~l~f~~~~-~~~~~~~l~~v~~~~~g~~~~~~~~~l----t~~~~~~~~~~s~-dg~~l~~~~s~~~~p~~l~ 267 (550)
.++|||+.||.+... +......|....+...+... ....+ +.+..-..++++| +|++|+...... ..|.
T Consensus 261 ~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~--~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s---~~v~ 335 (365)
T d1jofa_ 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE--KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE---GWLE 335 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE--EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS---CEEE
T ss_pred EECCCCCEEEEEcccCCCccceEEEEEEecCCCcee--eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCC---CeEE
Confidence 489999999876542 22222334444442233200 01111 1122234467887 788776554332 2455
Q ss_pred EEEc
Q 008873 268 LCSL 271 (550)
Q Consensus 268 ~~~~ 271 (550)
++++
T Consensus 336 v~~~ 339 (365)
T d1jofa_ 336 IYRW 339 (365)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.79 E-value=0.14 Score=44.49 Aligned_cols=183 Identities=11% Similarity=0.052 Sum_probs=96.7
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|+.++++++..+.+-. ..-.....++...-+..|++. +.. ...|.++++++..++.|....-..
T Consensus 59 ~I~~~~l~g~~~~~v~~--------~~~~~p~~iAvD~~~~~lY~~-d~~--~~~I~~~~~dg~~~~~l~~~~l~~---- 123 (263)
T d1npea_ 59 SIGRASLHGGEPTTIIR--------QDLGSPEGIALDHLGRTIFWT-DSQ--LDRIEVAKMDGTQRRVLFDTGLVN---- 123 (263)
T ss_dssp EEEEEESSSCCCEEEEC--------TTCCCEEEEEEETTTTEEEEE-ETT--TTEEEEEETTSCSCEEEECSSCSS----
T ss_pred eEEEEEcccCCcEEEEE--------eccccccEEEEeccCCeEEEe-ccC--CCEEEEEecCCceEEEEecccccC----
Confidence 46666776655544321 111122334444334455544 332 235899999988776665421110
Q ss_pred cCccccCCCCCccC-CCcEEEEEccC-CccEEEEEeCCCceeecccccCeE-EEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 140 HDCFTPLDKGVTKY-SGGFIWASEKT-GFRHLYLHDINGTCLGPITEGDWM-VEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~~~~~s~~~-g~~~l~~~~~~~~~~~~lT~~~~~-~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
|. . ...+ ..+++|.++.+ +...|++.+++|...+.|...+.. ...+ .+++.++.||++-... ..|
T Consensus 124 -p~--~----l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~gl-aiD~~~~~lYw~d~~~----~~I 191 (263)
T d1npea_ 124 -PR--G----IVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGL-TFDAFSSQLCWVDAGT----HRA 191 (263)
T ss_dssp -EE--E----EEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEE-EEETTTTEEEEEETTT----TEE
T ss_pred -Cc--E----EEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceE-EEeecCcEEEEEeCCC----CEE
Confidence 00 0 0112 24577777654 345799999998776665543322 2233 4788889999985433 468
Q ss_pred EEEEeCCCCCCCCCCCeeeCCC-CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNG-KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~-~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.++++ +|. ..+.+..+ ..-.. ++.++.+|.++-.. ...|++++..+|+.++.+
T Consensus 192 ~~~~~--~g~----~~~~v~~~~~~P~~--lav~~~~lYwtd~~---~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 192 ECLNP--AQP----GRRKVLEGLQYPFA--VTSYGKNLYYTDWK---TNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEET--TEE----EEEEEEECCCSEEE--EEEETTEEEEEETT---TTEEEEEETTTTEEEEEE
T ss_pred EEEEC--CCC----CeEEEECCCCCcEE--EEEECCEEEEEECC---CCEEEEEECCCCccceEE
Confidence 88888 554 12222211 11122 33345566555322 236888887777655444
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.66 E-value=0.12 Score=42.12 Aligned_cols=164 Identities=11% Similarity=-0.027 Sum_probs=94.3
Q ss_pred EEEEEEECCC-CceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCcee
Q 008873 59 VRLGVVSAAG-GPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWV 137 (550)
Q Consensus 59 ~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 137 (550)
..||..+++. |+..++.. .....+.+.+ -|++.++|.- ..++.+.||.+ ++|+.+.|++.+..+++
T Consensus 82 Hai~~~Nlk~~GEE~~i~s--------pk~vRI~S~~--yddk~vvF~G-ased~~~LYvi--egGklrkL~~vPpFsFV 148 (313)
T d2hu7a1 82 HALFKVNTSRPGEEQRLEA--------VKPMRILSGV--DTGEAVVFTG-ATEDRVALYAL--DGGGLRELARLPGFGFV 148 (313)
T ss_dssp EEEEEEETTSTTCEEECTT--------SCSBEEEEEE--ECSSCEEEEE-ECSSCEEEEEE--ETTEEEEEEEESSCEEE
T ss_pred eeEEEEccCCCCeeeEecC--------CceEEEEEee--ecCceEEEec-ccCCceEEEEE--eCCceeeeccCCCcceE
Confidence 4577777773 55555421 2223444444 4889888873 44456667765 68999999876543333
Q ss_pred eccCccccCCCCCccCCCcEEEEEc-cCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEE
Q 008873 138 NLHDCFTPLDKGVTKYSGGFIWASE-KTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHL 216 (550)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~s~-~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l 216 (550)
.+ ...|-++=..- .++...+|+.|+.+|..+.+|.++..+.... .+++.| + ++.-+..++..+
T Consensus 149 tD------------I~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay-~~~gnK-V--~sdyEt~gEsyw 212 (313)
T d2hu7a1 149 SD------------IRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSAS-ISPGMK-V--TAGLETAREARL 212 (313)
T ss_dssp EE------------EETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEEE-ECTTSC-E--EEEEEESSCEEE
T ss_pred Ee------------ccCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCccccee-EccCce-e--eeccCCCCceEE
Confidence 21 12332221211 2345678999998899999999998887654 676655 4 444333444554
Q ss_pred EEEEeCCCCCCCCCCCeeeCCCC-c--------eEEEEECCCCCEEEEee
Q 008873 217 YCAKLYPDWNHTLEAPVKLTNGK-G--------KHVAVLDHNMRNFVDFH 257 (550)
Q Consensus 217 ~~v~~~~~g~~~~~~~~~lt~~~-~--------~~~~~~s~dg~~l~~~~ 257 (550)
-.+|+. ++ ..+++-... . ....-..||++.++...
T Consensus 213 it~D~~-s~-----~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiak 256 (313)
T d2hu7a1 213 VTVDPR-DG-----SVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR 256 (313)
T ss_dssp EEECTT-TC-----CEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEecc-cC-----ceeeeecCcccceeecceEEEeeeeCCCCcEEEEEe
Confidence 466762 33 334443221 1 23345789988755443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=96.48 E-value=0.016 Score=52.45 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=83.6
Q ss_pred EEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEccCCccEEEE
Q 008873 93 VNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEKTGFRHLYL 171 (550)
Q Consensus 93 ~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~g~~~l~~ 171 (550)
+++|++|++++... +.. .|.++|+++++...-....... .+ ....+++|+ ++|++... ...|++
T Consensus 2 ~a~~~~~~~l~~~~-~~~---~v~v~D~~t~~~~~t~~~~~~~--------~p--~~l~~spDG~~l~v~~~~-~~~v~~ 66 (346)
T d1jmxb_ 2 PALKAGHEYMIVTN-YPN---NLHVVDVASDTVYKSCVMPDKF--------GP--GTAMMAPDNRTAYVLNNH-YGDIYG 66 (346)
T ss_dssp CCCCTTCEEEEEEE-TTT---EEEEEETTTTEEEEEEECSSCC--------SS--CEEEECTTSSEEEEEETT-TTEEEE
T ss_pred ccCCCCCcEEEEEc-CCC---EEEEEECCCCCEEEEEEcCCCC--------Cc--ceEEECCCCCEEEEEECC-CCcEEE
Confidence 57899999987764 322 5999999999764333221110 00 001345665 66666432 257899
Q ss_pred EeCCCceee-ccccc--CeEEEE---EEeEeecCCEEEEEEcCCC-------CceeEEEEEEeCCCCCCCCCCCeeeCCC
Q 008873 172 HDINGTCLG-PITEG--DWMVEQ---IVGVNEASGQVYFTGTLDG-------PLESHLYCAKLYPDWNHTLEAPVKLTNG 238 (550)
Q Consensus 172 ~~~~~~~~~-~lT~~--~~~~~~---~~~~s~dg~~l~f~~~~~~-------~~~~~l~~v~~~~~g~~~~~~~~~lt~~ 238 (550)
+|+.+++.. .+..+ ...... -..+++||+.+|+...... .....+..++.. .+. ...........
T Consensus 67 ~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~~~~~~~ 144 (346)
T d1jmxb_ 67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGL-EAKPVRTFPMP 144 (346)
T ss_dssp EETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGG-GBCCSEEEECC
T ss_pred EeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc-cce-eeeEEEeeecc
Confidence 998876543 22211 111111 1248999999988764210 011234444542 221 00111122222
Q ss_pred CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 239 KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 239 ~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
.+.....++++++.++. + ..+.++++.+++..+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~ 179 (346)
T d1jmxb_ 145 RQVYLMRAADDGSLYVA--G-----PDIYKMDVKTGKYTVAL 179 (346)
T ss_dssp SSCCCEEECTTSCEEEE--S-----SSEEEECTTTCCEEEEE
T ss_pred CceEEEEecCCCEEEEe--C-----CcceEEEccCCCEEEEE
Confidence 23333456777765432 2 24566677666654444
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.44 E-value=0.27 Score=45.00 Aligned_cols=78 Identities=8% Similarity=0.049 Sum_probs=42.3
Q ss_pred EEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCC-CCeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEE
Q 008873 190 EQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLE-APVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILL 268 (550)
Q Consensus 190 ~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~-~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~ 268 (550)
... .++|||+++|......+ .|+.++....+..... .......+.+-..+.|+|||++++.+.... ..+.+
T Consensus 148 h~v-~~sPdG~~l~v~d~g~d----~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~---~~V~v 219 (365)
T d1jofa_ 148 HGM-VFDPTETYLYSADLTAN----KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG---NRICE 219 (365)
T ss_dssp EEE-EECTTSSEEEEEETTTT----EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT---TEEEE
T ss_pred eEE-EECCCCCEEEEeeCCCC----EEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCC---CEEEE
Confidence 444 48999999987754333 3444444223321100 001111234456678999999776554332 36777
Q ss_pred EEcCCCc
Q 008873 269 CSLQDGS 275 (550)
Q Consensus 269 ~~~~~g~ 275 (550)
++..+++
T Consensus 220 ~~~~~~~ 226 (365)
T d1jofa_ 220 YVIDPAT 226 (365)
T ss_dssp EEECTTT
T ss_pred EEecCCC
Confidence 7765443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.38 Score=41.61 Aligned_cols=183 Identities=9% Similarity=-0.006 Sum_probs=100.9
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCc----eEEEEEeecCce
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQ----RKVILVEELDSW 136 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~----~~~l~~~~~~~~ 136 (550)
|..+++++.....+.- .......+.+.+.++.|++. +... ..|+.+++++.. .+.+... ..+
T Consensus 12 I~~~~l~~~~~~~~~~---------~~~~~~~id~d~~~~~lYw~-D~~~--~~I~~~~l~~~~~~~~~~~~~~~--~~~ 77 (266)
T d1ijqa1 12 VRKMTLDRSEYTSLIP---------NLRNVVALDTEVASNRIYWS-DLSQ--RMICSTQLDRAHGVSSYDTVISR--DIQ 77 (266)
T ss_dssp EEEEETTSCCCEEEEC---------SCSSEEEEEEETTTTEEEEE-ETTT--TEEEEEEC--------CEEEECS--SCS
T ss_pred EEEEECCCCcceeeeC---------CCCceEEEEEEeCCCEEEEE-ECCC--CEEEEEEecCCCCCcceEEEEeC--CCC
Confidence 5678888877666522 12334567788877777554 3322 258888876532 1222211 100
Q ss_pred eeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeE
Q 008873 137 VNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESH 215 (550)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~ 215 (550)
.+. .++. .|..+. +|.++. +...|.+++++|...+.+... ....... ..+|....||++..... ..
T Consensus 78 ~p~--glAv-----D~~~~~-lY~~d~-~~~~I~v~~~~g~~~~~~~~~~~~~P~~l-~vd~~~g~ly~~~~~~~---~~ 144 (266)
T d1ijqa1 78 APD--GLAV-----DWIHSN-IYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAI-VVDPVHGFMYWTDWGTP---AK 144 (266)
T ss_dssp CCC--EEEE-----ETTTTE-EEEEET-TTTEEEEEETTSSSEEEEEECTTCCEEEE-EEETTTTEEEEEECSSS---CE
T ss_pred Ccc--eEEE-----eeccce-EEEEec-CCCEEEeEecCCceEEEEEcCCCCCcceE-EEEcccCeEEEeccCCC---cc
Confidence 000 0111 233443 444554 446899999988765554433 2223344 37888889998854332 47
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCC--CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNG--KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~--~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
|+++++ +|+ ..+.+... ......++++.++.|.++-+. ...|..+++. |+..+.+
T Consensus 145 I~r~~~--dGs----~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~---~~~I~~~~~d-G~~~~~~ 201 (266)
T d1ijqa1 145 IKKGGL--NGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSK---LHSISSIDVN-GGNRKTI 201 (266)
T ss_dssp EEEEET--TSC----CEEEEECSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEETT-SCSCEEE
T ss_pred eeEecc--CCC----ceecccccccceeeEEEeeccccEEEEecCC---cCEEEEEECC-CCCEEEE
Confidence 999998 775 34444332 224556788888888776333 2488999984 5433333
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.06 E-value=0.041 Score=49.34 Aligned_cols=57 Identities=7% Similarity=-0.077 Sum_probs=37.5
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEE
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKV 127 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~ 127 (550)
+.++|+...+....... ......+..+.|+|||++++...... .|++.|+.+++...
T Consensus 250 i~~~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~g~~dg----~i~iwd~~~~~~~~ 306 (340)
T d1tbga_ 250 CRLFDLRADQELMTYSH------DNIICGITSVSFSKSGRLLLAGYDDF----NCNVWDALKADRAG 306 (340)
T ss_dssp EEEEETTTTEEEEEECC------TTCCSCEEEEEECSSSCEEEEEETTS----CEEEEETTTCCEEE
T ss_pred EEEEeeccccccccccc------ccccCceEEEEECCCCCEEEEEECCC----EEEEEECCCCcEEE
Confidence 57788887665432111 22334578899999999887665332 37888888887644
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.01 E-value=0.18 Score=45.13 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=42.2
Q ss_pred CCCcEEEEEccCCccEEEEEeCCCceee-cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCC
Q 008873 153 YSGGFIWASEKTGFRHLYLHDINGTCLG-PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDW 225 (550)
Q Consensus 153 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~-~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g 225 (550)
+.++-+|+++. +...|+++++++++.. .+.......... .+.+|++.||++....+ .||++++...|
T Consensus 234 D~~GnlyVa~~-~~g~I~~~dp~~g~~~~~i~~p~~~~t~~-afg~d~~~lyVt~~~~g----~i~~~~~~~~G 301 (314)
T d1pjxa_ 234 DEDNNLLVANW-GSSHIEVFGPDGGQPKMRIRCPFEKPSNL-HFKPQTKTIFVTEHENN----AVWKFEWQRNG 301 (314)
T ss_dssp BTTCCEEEEEE-TTTEEEEECTTCBSCSEEEECSSSCEEEE-EECTTSSEEEEEETTTT----EEEEEECSSCB
T ss_pred ecCCcEEEEEc-CCCEEEEEeCCCCEEEEEEECCCCCEEEE-EEeCCCCEEEEEECCCC----cEEEEECCCCC
Confidence 44454566654 3468999999887643 333322223344 48899999999877554 78998874333
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.92 E-value=0.038 Score=51.45 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=54.2
Q ss_pred ceEEEcCCCCeEEEEEEeCCCCCeEEEeecCCCCCCCCCcccccCCCCCCCCCeEEEEEEECCCCceEE-EEcccCCC--
Q 008873 5 TGYWWSLDSKFIAFTQVDSSEIPRFRIMHQGKSSVGSEAQEDHAYPFAGASNVKVRLGVVSAAGGPVSW-MDLQCGGT-- 81 (550)
Q Consensus 5 ~~~~wSPdg~~lay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~-l~~~~~~~-- 81 (550)
.++.|||||++|+-...|.+. ..+.+||+++++... +.......
T Consensus 235 ~~l~~spdg~~l~sgs~D~t~---------------------------------~~i~lwd~~~g~~~~~l~~~~~~~~~ 281 (393)
T d1sq9a_ 235 RSVKFSPQGSLLAIAHDSNSF---------------------------------GCITLYETEFGERIGSLSVPTHSSQA 281 (393)
T ss_dssp EEEEECSSTTEEEEEEEETTE---------------------------------EEEEEEETTTCCEEEEECBC------
T ss_pred EEcccccccceeeeecCCCCc---------------------------------ceeeecccccceeeeeeccccccccc
Confidence 567899999998776655321 346778988876543 22110000
Q ss_pred --CCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEE
Q 008873 82 --DQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVIL 129 (550)
Q Consensus 82 --~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~ 129 (550)
.+..-...+..++|||||++|+...... .|.+-|+++|++....
T Consensus 282 ~~~~~gH~~~V~~l~fspd~~~l~S~s~D~----~v~vWd~~~g~~~~~l 327 (393)
T d1sq9a_ 282 SLGEFAHSSWVMSLSFNDSGETLCSAGWDG----KLRFWDVKTKERITTL 327 (393)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETTS----EEEEEETTTTEEEEEE
T ss_pred eeeeecccCceeeeccCCCCCeeEEECCCC----EEEEEECCCCCEEEEE
Confidence 0111224578899999999887665332 3666688999765443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.81 E-value=0.16 Score=44.18 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=25.2
Q ss_pred CceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCce
Q 008873 87 EEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQR 125 (550)
Q Consensus 87 ~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~ 125 (550)
...+..++|||||++++...... .|.+.++.+++.
T Consensus 162 ~~~v~~~~~s~~~~~l~~g~~dg----~i~i~d~~~~~~ 196 (287)
T d1pgua2 162 RAKPSYISISPSETYIAAGDVMG----KILLYDLQSREV 196 (287)
T ss_dssp SSCEEEEEECTTSSEEEEEETTS----CEEEEETTTTEE
T ss_pred CCceeEEEeccCccccccccccc----cccceeeccccc
Confidence 34578899999999887665333 277778877764
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.63 E-value=0.73 Score=41.40 Aligned_cols=146 Identities=13% Similarity=0.086 Sum_probs=73.0
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEE--ECCCCe--EEEEEEecCCC--ceEEEEEECCCCceEEEEEeecC
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVN--WMHGNI--LTAQVLNRSQT--KLKVLKFDIKTGQRKVILVEELD 134 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--wspDg~--~i~~~~~r~~~--~~~l~~~~~~~g~~~~l~~~~~~ 134 (550)
|++|||++.+...+..+ ......++ +.-+++ -++..++|... .-.+|.++...+....+.....+
T Consensus 52 l~vYdL~G~~l~~~~~G---------r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p 122 (353)
T d1h6la_ 52 LAVYSLEGKMLHSYHTG---------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRP 122 (353)
T ss_dssp CEEEETTCCEEEECCSS---------CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSC
T ss_pred EEEEcCCCcEEEecccC---------CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccccccc
Confidence 79999997777665332 11111222 223444 57788899753 34678888777765544322111
Q ss_pred ceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCC-ce-----eecccccCeEEEEEEeEeecCCEEEEEEcC
Q 008873 135 SWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDING-TC-----LGPITEGDWMVEQIVGVNEASGQVYFTGTL 208 (550)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~-~~-----~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~ 208 (550)
.-......+..+-......+.-++|++++.|.-..|.+..++ +. .+.+..+. ++.+.. +++..+.||+.-..
T Consensus 123 ~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~-q~EGCV-vDde~~~LyisEE~ 200 (353)
T d1h6la_ 123 IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS-QTEGMA-ADDEYGSLYIAEED 200 (353)
T ss_dssp EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS-CEEEEE-EETTTTEEEEEETT
T ss_pred cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC-ccceEE-EeCCCCcEEEecCc
Confidence 000000111111100001122267888888866666665332 21 22222222 345554 77777777776332
Q ss_pred CCCceeEEEEEEeC
Q 008873 209 DGPLESHLYCAKLY 222 (550)
Q Consensus 209 ~~~~~~~l~~v~~~ 222 (550)
..+|+++..
T Consensus 201 -----~Giw~~~a~ 209 (353)
T d1h6la_ 201 -----EAIWKFSAE 209 (353)
T ss_dssp -----TEEEEEESS
T ss_pred -----cceEEEEec
Confidence 357777763
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.43 E-value=0.86 Score=40.89 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=74.2
Q ss_pred eEEEEEEECCCCc--eEEEEcccCCCCCCCCC-ceeEEEEECCCCeEEEEEEecC--CCceEEEEEECCCCceEEEEEee
Q 008873 58 KVRLGVVSAAGGP--VSWMDLQCGGTDQNYDE-EYLARVNWMHGNILTAQVLNRS--QTKLKVLKFDIKTGQRKVILVEE 132 (550)
Q Consensus 58 ~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~-~~~~~~~wspDg~~i~~~~~r~--~~~~~l~~~~~~~g~~~~l~~~~ 132 (550)
...|+++|+++.+ ...+.+........... ..+ ++.=.+||+..+++.+.. ...-+|+.++.++.+.+-+.+..
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi-~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~ 145 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGI-STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 145 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEE-EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccce-eEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecC
Confidence 3578999998754 34444432211111111 121 222367888666665552 33457888887776544333322
Q ss_pred cCceeeccCccccCCCCCccCCCcEEEEEccC---------------CccEEEEEeCCCceeecccccCeEEEEEEeEee
Q 008873 133 LDSWVNLHDCFTPLDKGVTKYSGGFIWASEKT---------------GFRHLYLHDINGTCLGPITEGDWMVEQIVGVNE 197 (550)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------------g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~ 197 (550)
.+. ...|.+-. ..++++|++..+.. .+..++.++ +++.+.+..+-.-..++. +|+
T Consensus 146 ~~~------~~~pNDv~-~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~--~~~~~~~~~~l~~pNGI~-~s~ 215 (340)
T d1v04a_ 146 HKL------LPSVNDIV-AVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS--PNDVRVVAEGFDFANGIN-ISP 215 (340)
T ss_dssp CTT------CSSEEEEE-EEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC--SSCEEEEEEEESSEEEEE-ECT
T ss_pred Ccc------ccCccceE-EecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc--CCceEEEcCCCCccceeE-ECC
Confidence 221 11111000 11233455553321 124555555 444555544322234554 899
Q ss_pred cCCEEEEEEcCCCCceeEEEEEEe
Q 008873 198 ASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 198 dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
|++.||+..+... .|++.++
T Consensus 216 d~~~lyVa~t~~~----~i~~y~~ 235 (340)
T d1v04a_ 216 DGKYVYIAELLAH----KIHVYEK 235 (340)
T ss_dssp TSSEEEEEEGGGT----EEEEEEE
T ss_pred CCCEEEEEeCCCC----eEEEEEe
Confidence 9999999987643 4555566
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.38 E-value=0.71 Score=39.71 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=91.3
Q ss_pred eEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEE
Q 008873 90 LARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHL 169 (550)
Q Consensus 90 ~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l 169 (550)
...+++.+-.+.|+. .+... ..|+++++++++.+.+....-. .+. .++. .|..+ -+|.++. +...|
T Consensus 38 ~~~ld~D~~~~~iyw-sd~~~--~~I~~~~l~g~~~~~v~~~~~~--~p~--~iAv-----D~~~~-~lY~~d~-~~~~I 103 (263)
T d1npea_ 38 IIGLAFDCVDKVVYW-TDISE--PSIGRASLHGGEPTTIIRQDLG--SPE--GIAL-----DHLGR-TIFWTDS-QLDRI 103 (263)
T ss_dssp EEEEEEETTTTEEEE-EETTT--TEEEEEESSSCCCEEEECTTCC--CEE--EEEE-----ETTTT-EEEEEET-TTTEE
T ss_pred EEEEEEEeCCCEEEE-EECCC--CeEEEEEcccCCcEEEEEeccc--ccc--EEEE-----eccCC-eEEEecc-CCCEE
Confidence 334556555555544 33332 2599999988877666532100 000 0111 23344 4444443 34589
Q ss_pred EEEeCCCceeecccccC-eEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCCCC--ceEEEEE
Q 008873 170 YLHDINGTCLGPITEGD-WMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTNGK--GKHVAVL 246 (550)
Q Consensus 170 ~~~~~~~~~~~~lT~~~-~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~~~--~~~~~~~ 246 (550)
.++++++...+.|.... .....+. .+|.+..||++..... ...|+++++ +|. ..+.+...+ .-...++
T Consensus 104 ~~~~~dg~~~~~l~~~~l~~p~~l~-vdp~~g~ly~t~~~~~--~~~I~r~~~--dG~----~~~~i~~~~~~~P~glai 174 (263)
T d1npea_ 104 EVAKMDGTQRRVLFDTGLVNPRGIV-TDPVRGNLYWTDWNRD--NPKIETSHM--DGT----NRRILAQDNLGLPNGLTF 174 (263)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEE-EETTTTEEEEEECCSS--SCEEEEEET--TSC----CCEEEECTTCSCEEEEEE
T ss_pred EEEecCCceEEEEecccccCCcEEE-EecccCcEEEeecCCC--CcEEEEecC--CCC----CceeeeeecccccceEEE
Confidence 99999887655554332 2233443 8888889998865432 246999998 665 233443221 2345677
Q ss_pred CCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 247 DHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 247 s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
++.++.|.++-... ..+..+++ +|...+.+
T Consensus 175 D~~~~~lYw~d~~~---~~I~~~~~-~g~~~~~v 204 (263)
T d1npea_ 175 DAFSSQLCWVDAGT---HRAECLNP-AQPGRRKV 204 (263)
T ss_dssp ETTTTEEEEEETTT---TEEEEEET-TEEEEEEE
T ss_pred eecCcEEEEEeCCC---CEEEEEEC-CCCCeEEE
Confidence 77777776663322 47888887 45444433
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.30 E-value=0.36 Score=42.57 Aligned_cols=117 Identities=10% Similarity=0.105 Sum_probs=63.0
Q ss_pred EEEEECCCCeEEEEEEecCCCceEEEEEECC--CCc----eEEEEEeecC-ceeeccCccccCCCCCccCCCcEEEEEcc
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIK--TGQ----RKVILVEELD-SWVNLHDCFTPLDKGVTKYSGGFIWASEK 163 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~--~g~----~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 163 (550)
..+.||||++.+++..... ..||.++.+ .+. ........+. ...+ ....+.++-+|++.-
T Consensus 151 Ng~~~s~d~~~l~~~dt~~---~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pd----------G~~vD~~GnlWva~~ 217 (295)
T d2ghsa1 151 NSICFSPDGTTGYFVDTKV---NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMD----------GSVCDAEGHIWNARW 217 (295)
T ss_dssp EEEEECTTSCEEEEEETTT---CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEE----------EEEECTTSCEEEEEE
T ss_pred ceeeecCCCceEEEeeccc---ceeeEeeecccccccccceEEEeccCccccccc----------ceEEcCCCCEEeeee
Confidence 4679999999877764433 247777654 322 2222211111 1100 001244455555543
Q ss_pred CCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCC---------CceeEEEEEEe
Q 008873 164 TGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDG---------PLESHLYCAKL 221 (550)
Q Consensus 164 ~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~---------~~~~~l~~v~~ 221 (550)
.+ ..|++++.+|...+.+.-....+.....--+|.+.||+++...+ +..-.||++.+
T Consensus 218 ~~-g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~ 283 (295)
T d2ghsa1 218 GE-GAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGI 283 (295)
T ss_dssp TT-TEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSS
T ss_pred CC-CceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcC
Confidence 22 46899998887766665432234444422478899999876432 11235887765
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.59 Score=40.90 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=24.8
Q ss_pred eEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 241 KHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 241 ~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
...+.|+|++++|+-...+ ..+.+.|+.+++.+..+
T Consensus 254 v~~l~~sp~~~~lasg~~D----g~v~vWD~~~~~~l~~~ 289 (342)
T d1yfqa_ 254 VNSIEFSPRHKFLYTAGSD----GIISCWNLQTRKKIKNF 289 (342)
T ss_dssp EEEEEECTTTCCEEEEETT----SCEEEEETTTTEEEEEC
T ss_pred ceeEEecCCccEEEEECCC----CEEEEEECCCCcEEEEe
Confidence 4567899999877544332 36888898877765444
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=93.43 E-value=0.52 Score=40.58 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh----CC----CeeEEEEEcCCcC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR----FP----DVFQCAVSGAPVT 447 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~----~~----~~~~~~v~~~~~~ 447 (550)
..++...++.+.++. ...+|.+.|||+||.+|..++.. .+ ..+.+..-.+|-.
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~l~~~~~~~~~~~i~~~tFG~Prv 176 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRV 176 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHHHHHHCTTCSTTTEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHHHHHHhCcccCCCcceEEEecCccc
Confidence 455666676665543 23589999999999999877753 22 2355555566643
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.29 E-value=0.7 Score=42.25 Aligned_cols=117 Identities=6% Similarity=-0.019 Sum_probs=64.0
Q ss_pred cCCCcEEEEEccCCccEEEEEeCCCceee-------cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCC
Q 008873 152 KYSGGFIWASEKTGFRHLYLHDINGTCLG-------PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPD 224 (550)
Q Consensus 152 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~-------~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~ 224 (550)
++++++++....+| .|.++|+.+++.. .+..+.-.+.... |+|||+.|+..+.+.......|| ++. .
T Consensus 192 ~s~dg~lasgs~Dg--~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~-~spdg~~l~sgs~D~t~~~i~lw--d~~-~ 265 (393)
T d1sq9a_ 192 ISERGLIATGFNNG--TVQISELSTLRPLYNFESQHSMINNSNSIRSVK-FSPQGSLLAIAHDSNSFGCITLY--ETE-F 265 (393)
T ss_dssp ECTTSEEEEECTTS--EEEEEETTTTEEEEEEECCC---CCCCCEEEEE-ECSSTTEEEEEEEETTEEEEEEE--ETT-T
T ss_pred ECCCCEEEEEeCCC--cEEEEeecccccccccccccccccccceEEEcc-cccccceeeeecCCCCcceeeec--ccc-c
Confidence 45666655544444 4666676655421 1222223355554 99999988766654432223444 441 2
Q ss_pred CCCCCCCCeeeC--------------CCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 225 WNHTLEAPVKLT--------------NGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 225 g~~~~~~~~~lt--------------~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
+. ....|. ....+..+.|+||+++|+-...+ ..|.+.|+++|+.+..+..
T Consensus 266 g~----~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D----~~v~vWd~~~g~~~~~l~g 329 (393)
T d1sq9a_ 266 GE----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD----GKLRFWDVKTKERITTLNM 329 (393)
T ss_dssp CC----EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT----SEEEEEETTTTEEEEEEEC
T ss_pred ce----eeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC----CEEEEEECCCCCEEEEECC
Confidence 21 111111 11236777999999876533222 4889999999987776654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.21 E-value=0.69 Score=37.61 Aligned_cols=117 Identities=13% Similarity=0.011 Sum_probs=70.8
Q ss_pred CCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEc-CCCCceeEEEEEEeCCCCCCCCCC
Q 008873 153 YSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGT-LDGPLESHLYCAKLYPDWNHTLEA 231 (550)
Q Consensus 153 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~-~~~~~~~~l~~v~~~~~g~~~~~~ 231 (550)
+.+.+++++-..|--++|.++ |++...||...-.....+ - +.=+.+.|.-+ ..+.....||.+++...| +
T Consensus 24 ~~d~ll~~~~seG~vni~~l~--g~~~vkLtkePI~~~~~P-k-~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~G-----E 94 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYD--GGETVKLNREPINSVLDP-H-YGVGRVILVRDVSKGAEQHALFKVNTSRPG-----E 94 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEES--SSSCEECCSSCCSEECEE-C-TTBSEEEEEEECSTTSCCEEEEEEETTSTT-----C
T ss_pred cCCcEEEEEeccceEEEEEEe--CCEEEEEecccccCcCCC-c-cCcceEEEEeehhcCcceeeEEEEccCCCC-----e
Confidence 345577777667878888875 888899998754322111 1 12236667665 345555789999983224 3
Q ss_pred CeeeCCCCceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEeccC
Q 008873 232 PVKLTNGKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPLYE 282 (550)
Q Consensus 232 ~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l~~ 282 (550)
..++....-.--.+..-|++.++|+.++-+.. .||+++ .|+ ++.|..
T Consensus 95 E~~i~spk~vRI~S~~yddk~vvF~Gased~~-~LYvie--gGk-lrkL~~ 141 (313)
T d2hu7a1 95 EQRLEAVKPMRILSGVDTGEAVVFTGATEDRV-ALYALD--GGG-LRELAR 141 (313)
T ss_dssp EEECTTSCSBEEEEEEECSSCEEEEEECSSCE-EEEEEE--TTE-EEEEEE
T ss_pred eeEecCCceEEEEEeeecCceEEEecccCCce-EEEEEe--CCc-eeeecc
Confidence 44444332222333445788999998886553 677755 565 566643
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=93.10 E-value=0.61 Score=40.18 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHh
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLA 431 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~ 431 (550)
..++...++.+.++. ...+|.+.|||+||.+|..++.
T Consensus 115 ~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 151 (265)
T d3tgla_ 115 QNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCAL 151 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHH
Confidence 345666666555543 2468999999999999988765
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=92.99 E-value=0.23 Score=43.04 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhC---CCeeEEEEEcCCc
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARF---PDVFQCAVSGAPV 446 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~---~~~~~~~v~~~~~ 446 (550)
..++...++.+.++. ..-+|.+.|||+||.+|..++... ...+++..-.+|-
T Consensus 121 ~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~~l~~~~~~i~~~tFG~Pr 175 (269)
T d1tiba_ 121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPR 175 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCC
T ss_pred HHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHHHHHhccCcceEEEecCCC
Confidence 345666666666553 235899999999999998887632 2234444444443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.46 E-value=0.83 Score=41.84 Aligned_cols=96 Identities=9% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCc-EEEEEcc-------CC----
Q 008873 98 GNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGG-FIWASEK-------TG---- 165 (550)
Q Consensus 98 Dg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-------~g---- 165 (550)
|||+++. .++. .++|.+|++++-++.+|.+.+....... +++ ...++. +++...+ +|
T Consensus 98 DGrylFV-NDka--n~RVAvIdl~~fkt~kIi~iPn~~~~HG---~r~-----~~~p~T~YV~~~~e~~vP~pndg~~l~ 166 (459)
T d1fwxa2 98 DGRFLFM-NDKA--NTRVARVRCDVMKCDAILEIPNAKGIHG---LRP-----QKWPRSNYVFCNGEDETPLVNDGTNME 166 (459)
T ss_dssp EEEEEEE-EETT--TTEEEEEETTTTEEEEEEECSSCCSEEE---EEE-----CCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred ceeEEEE-EcCC--CceEEEEECcceeeeEEEecCCCCCCce---eec-----ccCCCeEEEEccCccccccCCCCcccc
Confidence 7776644 3443 3469999999999998887654433211 111 112222 4443211 11
Q ss_pred ----c-cEEEEEeCCCceee-ccc-ccCeEEEEEEeEeecCCEEEEEEc
Q 008873 166 ----F-RHLYLHDINGTCLG-PIT-EGDWMVEQIVGVNEASGQVYFTGT 207 (550)
Q Consensus 166 ----~-~~l~~~~~~~~~~~-~lT-~~~~~~~~~~~~s~dg~~l~f~~~ 207 (550)
+ .-+..+|.++.+.. ++. .++-+ -..+++||+++++++-
T Consensus 167 d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld---~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 167 DVANYVNVFTAVDADKWEVAWQVLVSGNLD---NCDADYEGKWAFSTSY 212 (459)
T ss_dssp CGG-EEEEEEEEETTTTEEEEEEEESSCCC---CEEECSSSSEEEEEES
T ss_pred chhhcceEEEEEecCCceEEEEeeeCCChh---ccccCCCCCEEEEEec
Confidence 2 23456787776532 333 33321 2348999999999873
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=91.87 E-value=0.075 Score=46.40 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR 432 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~ 432 (550)
..++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 345666666665553 23589999999999999887764
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=91.81 E-value=0.18 Score=43.57 Aligned_cols=53 Identities=19% Similarity=0.115 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhh---CCCeeEEEEEcCCcC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLAR---FPDVFQCAVSGAPVT 447 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~---~~~~~~~~v~~~~~~ 447 (550)
..++...++.+.++. ...+|.+.|||+||.+|..++.. ....+++..-.+|-.
T Consensus 108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~l~~~~~~~~~~tFG~Prv 163 (261)
T d1uwca_ 108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRS 163 (261)
T ss_dssp HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHHHTTCSSEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHHHHhcCCCcceEEecCccc
Confidence 345666677666653 23589999999999999877653 223345555556644
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.80 E-value=3.7 Score=35.64 Aligned_cols=127 Identities=10% Similarity=0.087 Sum_probs=64.9
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeecc
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLH 140 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~ 140 (550)
|.++|+.+++....- ......+..++|++ +.++...... .|.+.|+.+++..... .......
T Consensus 225 i~i~d~~~~~~~~~~--------~~h~~~v~~~~~~~--~~l~~~~~dg----~i~iwd~~~~~~~~~~-~~~~~~~--- 286 (355)
T d1nexb2 225 IRIWDLENGELMYTL--------QGHTALVGLLRLSD--KFLVSAAADG----SIRGWDANDYSRKFSY-HHTNLSA--- 286 (355)
T ss_dssp EEEEETTTCCEEEEE--------CCCSSCCCEEEECS--SEEEEECTTS----EEEEEETTTCCEEEEE-ECTTCCC---
T ss_pred EEeeecccccccccc--------cccccccccccccc--ceeeeeeccc----ccccccccccceeccc-ccCCceE---
Confidence 678899888764331 12233455667764 5555543222 3667788877644322 2211100
Q ss_pred CccccCCCCCccCCC-cEEEEEccCCccEEEEEeCCCceee--cccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 141 DCFTPLDKGVTKYSG-GFIWASEKTGFRHLYLHDINGTCLG--PITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 141 ~~~~~~~~~~~~~~~-~~~~~s~~~g~~~l~~~~~~~~~~~--~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
.. ..+++ .++..+. +| .|.++|+++++.. .+..+.-.+.... |++ +.++.++..++. ..|+
T Consensus 287 --~~------~~~~~~~~l~~g~-d~--~i~vwd~~tg~~~~~~~~~~~~~V~~v~-~~~--~~~~~~~s~dg~--~~l~ 350 (355)
T d1nexb2 287 --IT------TFYVSDNILVSGS-EN--QFNIYNLRSGKLVHANILKDADQIWSVN-FKG--KTLVAAVEKDGQ--SFLE 350 (355)
T ss_dssp --CC------EEEECSSEEEEEE-TT--EEEEEETTTCCBCCSCTTTTCSEEEEEE-EET--TEEEEEEESSSC--EEEE
T ss_pred --EE------EEcCCCCEEEEEe-CC--EEEEEECCCCCEEEEEecCCCCCEEEEE-EcC--CeEEEEEECCCc--EEEE
Confidence 00 11222 3554432 33 6888898776543 2333333455443 665 457666666653 4566
Q ss_pred EEEe
Q 008873 218 CAKL 221 (550)
Q Consensus 218 ~v~~ 221 (550)
..++
T Consensus 351 ~~df 354 (355)
T d1nexb2 351 ILDF 354 (355)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 6554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.46 E-value=2.3 Score=36.00 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=55.9
Q ss_pred EEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEE
Q 008873 91 ARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLY 170 (550)
Q Consensus 91 ~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~ 170 (550)
..++.+|+|+.++. ... ...|+.++.++.....+.. ....+ | .....++++-+|+++. +...|+
T Consensus 143 ~~i~~~~~g~~~v~--~~~--~~~i~~~d~~~~~~~~~~~-~~~~~--------p--~gi~~d~~g~l~vsd~-~~~~i~ 206 (260)
T d1rwia_ 143 DGVAVDNSGNVYVT--DTD--NNRVVKLEAESNNQVVLPF-TDITA--------P--WGIAVDEAGTVYVTEH-NTNQVV 206 (260)
T ss_dssp CEEEECTTCCEEEE--EGG--GTEEEEECTTTCCEEECCC-SSCCS--------E--EEEEECTTCCEEEEET-TTTEEE
T ss_pred ceeeecCCCCEeee--ccc--cccccccccccceeeeeec-cccCC--------C--ccceeeeeeeeeeeec-CCCEEE
Confidence 45678899984332 222 2358889888765433211 11000 0 0012345555677765 335688
Q ss_pred EEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEe
Q 008873 171 LHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKL 221 (550)
Q Consensus 171 ~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~ 221 (550)
+++.++...+.+..... ....+ .++++|+ ||++-... ..|.+++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~P~~i-~~d~~g~-l~vad~~~----~rI~~i~~ 252 (260)
T d1rwia_ 207 KLLAGSTTSTVLPFTGLNTPLAV-AVDSDRT-VYVADRGN----DRVVKLTS 252 (260)
T ss_dssp EECTTCSCCEECCCCSCCCEEEE-EECTTCC-EEEEEGGG----TEEEEECC
T ss_pred EEeCCCCeEEEEccCCCCCeEEE-EEeCCCC-EEEEECCC----CEEEEEeC
Confidence 88877765444443332 22333 3677764 66653332 35655554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.13 E-value=4.1 Score=35.00 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=69.7
Q ss_pred EECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccEEEEEe
Q 008873 94 NWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHD 173 (550)
Q Consensus 94 ~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~ 173 (550)
.+++|++.++...... .|.+.++.+++......... ..+. .+ .++++ +++....+| .|.+++
T Consensus 182 ~~~~~~~~l~s~~~dg----~i~~~d~~~~~~~~~~~~~~-~~v~---~~-------~~~~~-~l~s~s~d~--~i~iwd 243 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLDT----SIRVWDVETGNCIHTLTGHQ-SLTS---GM-------ELKDN-ILVSGNADS--TVKIWD 243 (342)
T ss_dssp EEEECSSEEEEEETTS----CEEEEETTTCCEEEEECCCC-SCEE---EE-------EEETT-EEEEEETTS--CEEEEE
T ss_pred cccCCCCEEEEEeCCC----eEEEeecccceeeeEecccc-ccee---EE-------ecCCC-EEEEEcCCC--EEEEEe
Confidence 4555666655543322 26667777776543222111 1110 01 12333 444443444 466666
Q ss_pred CCCcee-ecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCCeeeCC--C----CceEEEEE
Q 008873 174 INGTCL-GPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAPVKLTN--G----KGKHVAVL 246 (550)
Q Consensus 174 ~~~~~~-~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~~~lt~--~----~~~~~~~~ 246 (550)
....+. ..+............++.+++.++ ++..++ ...|| ++. .|. ....+.. . .....+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~Dg--~i~iw--d~~-tg~----~i~~~~~~~~~~~~~~v~~v~~ 313 (342)
T d2ovrb2 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDG--TVKLW--DLK-TGE----FIRNLVTLESGGSGGVVWRIRA 313 (342)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEECSSEEE-EEETTS--EEEEE--ETT-TCC----EEEEEEECTTGGGTCEEEEEEE
T ss_pred cccccccccccccceeeeceeecccCCCeeE-EEcCCC--EEEEE--ECC-CCC----EEEEEecccCCCCCCCEEEEEE
Confidence 655432 233222111111223555666554 444443 24444 652 232 2223321 1 12566789
Q ss_pred CCCCCEEEEeecCCCCCCEEEEEEc
Q 008873 247 DHNMRNFVDFHDSLDSPPRILLCSL 271 (550)
Q Consensus 247 s~dg~~l~~~~s~~~~p~~l~~~~~ 271 (550)
+|++..++....+.+.-..|++.|.
T Consensus 314 s~~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 314 SNTKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp CSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCeeEEEEEeC
Confidence 9998766554444444567888876
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=4.1 Score=35.03 Aligned_cols=135 Identities=17% Similarity=0.133 Sum_probs=69.6
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.|.++|+.+++...... .....+..+.+ ++++++...... .|.+.+...++........... .
T Consensus 198 ~i~~~d~~~~~~~~~~~--------~~~~~v~~~~~--~~~~l~s~s~d~----~i~iwd~~~~~~~~~~~~~~~~---~ 260 (342)
T d2ovrb2 198 SIRVWDVETGNCIHTLT--------GHQSLTSGMEL--KDNILVSGNADS----TVKIWDIKTGQCLQTLQGPNKH---Q 260 (342)
T ss_dssp CEEEEETTTCCEEEEEC--------CCCSCEEEEEE--ETTEEEEEETTS----CEEEEETTTCCEEEEECSTTSC---S
T ss_pred eEEEeecccceeeeEec--------ccccceeEEec--CCCEEEEEcCCC----EEEEEeccccccccccccccee---e
Confidence 36788999887654321 22233444444 555665554332 3777788877755433221110 0
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCcee-ecccc-----cCeEEEEEEeEeecCCEEEEEEcCCCCce
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCL-GPITE-----GDWMVEQIVGVNEASGQVYFTGTLDGPLE 213 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~-~~lT~-----~~~~~~~~~~~s~dg~~l~f~~~~~~~~~ 213 (550)
...... .++++ +++....+| .|.++++.+++. +.+.. ....+.... |+|++ .++.++..++...
T Consensus 261 ~~~~~~-----~~~~~-~~~s~s~Dg--~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~-~s~~~-~~la~g~~dGt~~ 330 (342)
T d2ovrb2 261 SAVTCL-----QFNKN-FVITSSDDG--TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-ASNTK-LVCAVGSRNGTEE 330 (342)
T ss_dssp SCEEEE-----EECSS-EEEEEETTS--EEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-ECSSE-EEEEEECSSSSSC
T ss_pred eceeec-----ccCCC-eeEEEcCCC--EEEEEECCCCCEEEEEecccCCCCCCCEEEEE-ECCCC-CEEEEEeCCCCCe
Confidence 000000 12333 444433344 577778766543 33321 123455544 88886 4555666666556
Q ss_pred eEEEEEEe
Q 008873 214 SHLYCAKL 221 (550)
Q Consensus 214 ~~l~~v~~ 221 (550)
..|+..|+
T Consensus 331 ~~l~~~Df 338 (342)
T d2ovrb2 331 TKLLVLDF 338 (342)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEeC
Confidence 77888787
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.77 E-value=4.1 Score=34.32 Aligned_cols=164 Identities=12% Similarity=0.022 Sum_probs=74.9
Q ss_pred EEEEEECCCCceEEEEcccCCCCC-CCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceee
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQ-NYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVN 138 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~ 138 (550)
.||+.|..++..+........... .........+++.++|++++. ++.. ..++.++..+........ ....
T Consensus 69 ~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~--d~~~--~~~~~~~~~~~~~~~~~~-~~~~--- 140 (260)
T d1rwia_ 69 TVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVA--DRGN--NRVVKLAAGSKTQTVLPF-TGLN--- 140 (260)
T ss_dssp CEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEE--EGGG--TEEEEECTTCSSCEECCC-CSCC---
T ss_pred CEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEee--cccc--ccccccccccceeeeeee-cccC---
Confidence 478777775544332111111100 111123456788899885432 3322 246777766654322111 0000
Q ss_pred ccCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCe-EEEEEEeEeecCCEEEEEEcCCCCceeEEE
Q 008873 139 LHDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDW-MVEQIVGVNEASGQVYFTGTLDGPLESHLY 217 (550)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~ 217 (550)
....+ ..++++-+|+++. +...|++++.++...+.+..... ....+ .++++| .||++.... ..|+
T Consensus 141 ~p~~i-------~~~~~g~~~v~~~-~~~~i~~~d~~~~~~~~~~~~~~~~p~gi-~~d~~g-~l~vsd~~~----~~i~ 206 (260)
T d1rwia_ 141 DPDGV-------AVDNSGNVYVTDT-DNNRVVKLEAESNNQVVLPFTDITAPWGI-AVDEAG-TVYVTEHNT----NQVV 206 (260)
T ss_dssp SCCEE-------EECTTCCEEEEEG-GGTEEEEECTTTCCEEECCCSSCCSEEEE-EECTTC-CEEEEETTT----TEEE
T ss_pred Cccee-------eecCCCCEeeecc-ccccccccccccceeeeeeccccCCCccc-eeeeee-eeeeeecCC----CEEE
Confidence 00000 1123333455543 33578899887765444432221 12233 367776 477665443 3577
Q ss_pred EEEeCCCCCCCCCCCeeeCCCC--ceEEEEECCCCC
Q 008873 218 CAKLYPDWNHTLEAPVKLTNGK--GKHVAVLDHNMR 251 (550)
Q Consensus 218 ~v~~~~~g~~~~~~~~~lt~~~--~~~~~~~s~dg~ 251 (550)
+++. ++. ....+.... .-..++++++|.
T Consensus 207 ~~~~--~~~----~~~~~~~~~~~~P~~i~~d~~g~ 236 (260)
T d1rwia_ 207 KLLA--GST----TSTVLPFTGLNTPLAVAVDSDRT 236 (260)
T ss_dssp EECT--TCS----CCEECCCCSCCCEEEEEECTTCC
T ss_pred EEeC--CCC----eEEEEccCCCCCeEEEEEeCCCC
Confidence 7765 443 222322221 124456677764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=1.4 Score=37.75 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=20.0
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeE
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNIL 101 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~ 101 (550)
|.+||+.+++...... ......+..++|+|+++.
T Consensus 186 i~i~d~~~~~~~~~~~-------~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 186 ILLYDLQSREVKTSRW-------AFRTSKINAISWKPAEKG 219 (287)
T ss_dssp EEEEETTTTEEEECCS-------CCCSSCEEEEEECCCC--
T ss_pred ccceeecccccccccc-------cccccccceeeecccccc
Confidence 5778888876543211 122345778899988763
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.80 E-value=6.6 Score=33.82 Aligned_cols=170 Identities=10% Similarity=0.052 Sum_probs=84.0
Q ss_pred EEEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeec
Q 008873 60 RLGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNL 139 (550)
Q Consensus 60 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~ 139 (550)
.+.++|+.+++...... ..........|+|+++.++...... .|.+.+..+++.......... .+.
T Consensus 182 ~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~~~~h~~-~v~- 247 (355)
T d1nexb2 182 TLIVWDVAQMKCLYILS--------GHTDRIYSTIYDHERKRCISASMDT----TIRIWDLENGELMYTLQGHTA-LVG- 247 (355)
T ss_dssp CEEEEETTTTEEEEEEC--------CCSSCEEEEEEETTTTEEEEEETTS----CEEEEETTTCCEEEEECCCSS-CCC-
T ss_pred eeeeeecccccceeeee--------ccccccccccccccceeeecccccc----eEEeeeccccccccccccccc-ccc-
Confidence 36778988876544322 2234566788999999877665433 377888888876443321111 000
Q ss_pred cCccccCCCCCccCCCcEEEEEccCCccEEEEEeCCCceeecccccCeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEE
Q 008873 140 HDCFTPLDKGVTKYSGGFIWASEKTGFRHLYLHDINGTCLGPITEGDWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 219 (550)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v 219 (550)
.+ .+++ .+++....+| .|.++|+.....+ ++...-.+.....++++++ ++..+.+ + .|...
T Consensus 248 --~~-------~~~~-~~l~~~~~dg--~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~-~l~~g~d-~----~i~vw 308 (355)
T d1nexb2 248 --LL-------RLSD-KFLVSAAADG--SIRGWDANDYSRK-FSYHHTNLSAITTFYVSDN-ILVSGSE-N----QFNIY 308 (355)
T ss_dssp --EE-------EECS-SEEEEECTTS--EEEEEETTTCCEE-EEEECTTCCCCCEEEECSS-EEEEEET-T----EEEEE
T ss_pred --cc-------cccc-ceeeeeeccc--cccccccccccee-cccccCCceEEEEEcCCCC-EEEEEeC-C----EEEEE
Confidence 01 1233 3555544445 4666777654322 2221111222334566765 4445542 2 34444
Q ss_pred EeCCCCCCCCCCCe-eeCC-CCceEEEEECCCCCEEEEeecCCCCCCEEEEEE
Q 008873 220 KLYPDWNHTLEAPV-KLTN-GKGKHVAVLDHNMRNFVDFHDSLDSPPRILLCS 270 (550)
Q Consensus 220 ~~~~~g~~~~~~~~-~lt~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~ 270 (550)
++. .|. .+. .+.. .....++.|+|+ .++...+. +.--.|+++|
T Consensus 309 d~~-tg~----~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~-dg~~~l~~~d 353 (355)
T d1nexb2 309 NLR-SGK----LVHANILKDADQIWSVNFKGK--TLVAAVEK-DGQSFLEILD 353 (355)
T ss_dssp ETT-TCC----BCCSCTTTTCSEEEEEEEETT--EEEEEEES-SSCEEEEEEE
T ss_pred ECC-CCC----EEEEEecCCCCCEEEEEEcCC--eEEEEEEC-CCcEEEEEEe
Confidence 762 332 111 1221 223566677765 45554443 2222455555
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=88.13 E-value=0.73 Score=42.83 Aligned_cols=100 Identities=6% Similarity=-0.002 Sum_probs=58.3
Q ss_pred CCc-EEEEEccCCccEEEEEeCCCceeecccc---cCeEEEEEEeEeecCCEEEEEEcCCCC-------------ce-eE
Q 008873 154 SGG-FIWASEKTGFRHLYLHDINGTCLGPITE---GDWMVEQIVGVNEASGQVYFTGTLDGP-------------LE-SH 215 (550)
Q Consensus 154 ~~~-~~~~s~~~g~~~l~~~~~~~~~~~~lT~---~~~~~~~~~~~s~dg~~l~f~~~~~~~-------------~~-~~ 215 (550)
+|+ ++|++++ +..+|.++|+++.+..++.. +. ..... .+++||+++|+..+.... .. ..
T Consensus 81 pDGr~lfV~d~-~~~rVavIDl~t~k~~~ii~iP~g~-gphgi-~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~ 157 (441)
T d1qnia2 81 YDGKYLFINDK-ANTRVARIRLDIMKTDKITHIPNVQ-AIHGL-RLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM 157 (441)
T ss_dssp EEEEEEEEEET-TTTEEEEEETTTTEEEEEEECTTCC-CEEEE-EECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred CCCCEEEEEcC-CCCEEEEEECCCCcEeeEEecCCCC-Cccce-EEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence 444 8888876 45689999999877655432 22 22333 489999988877643211 11 11
Q ss_pred EEEEEeCCCCCCCCCCCeeeCCCCceEEEEECCCCCEEEEeecCCC
Q 008873 216 LYCAKLYPDWNHTLEAPVKLTNGKGKHVAVLDHNMRNFVDFHDSLD 261 (550)
Q Consensus 216 l~~v~~~~~g~~~~~~~~~lt~~~~~~~~~~s~dg~~l~~~~s~~~ 261 (550)
+-.++. ... ....++........+.++|||+++++++.+..
T Consensus 158 ~~~iD~--~t~---~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse 198 (441)
T d1qnia2 158 FTAIDA--ETM---DVAWQVIVDGNLDNTDADYTGKYATSTCYNSE 198 (441)
T ss_dssp EEEEET--TTC---SEEEEEEESSCCCCEEECSSSSEEEEEESCTT
T ss_pred EEeecC--ccc---eeeEEEecCCCccceEECCCCCEEEEEecCCC
Confidence 222443 111 12233433334566789999999887765543
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=87.87 E-value=0.99 Score=36.65 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEechhHHHHHHHHhhCC----CeeEEEEEcC
Q 008873 393 AEDQLTGAEWLIKQGLAKVGHIGLYGWSYGGYLSAITLARFP----DVFQCAVSGA 444 (550)
Q Consensus 393 ~~D~~~~~~~l~~~~~~d~~~i~i~G~S~GG~~a~~~~~~~~----~~~~~~v~~~ 444 (550)
..++...+....++- -..||+|+|+|+|+.++-.++..-+ +++++++++.
T Consensus 79 ~~~~~~~i~~~a~~C--P~tkiVL~GYSQGA~V~~~~~~~l~~~~~~~V~avvlfG 132 (197)
T d1cexa_ 79 IREMLGLFQQANTKC--PDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFG 132 (197)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHHSCHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHHHhhC--CCCeEEEeeeccccHhhhcccccCChhhhhhEEEEEEEe
Confidence 345555666665552 2469999999999999988876542 4677777654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.65 E-value=0.48 Score=41.55 Aligned_cols=38 Identities=3% Similarity=-0.132 Sum_probs=23.3
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEe
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLN 107 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~ 107 (550)
|.+||+++++... ++. ........+|+|||+.++....
T Consensus 275 v~vWD~~~~~~l~-~~~--------~~~~~~~~~~s~~~~~l~~a~s 312 (342)
T d1yfqa_ 275 ISCWNLQTRKKIK-NFA--------KFNEDSVVKIACSDNILCLATS 312 (342)
T ss_dssp EEEEETTTTEEEE-ECC--------CCSSSEEEEEEECSSEEEEEEE
T ss_pred EEEEECCCCcEEE-Eec--------CCCCCEEEEEEeCCCEEEEEEc
Confidence 6789999886432 121 1122344678999997766543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.53 E-value=11 Score=31.16 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=32.1
Q ss_pred EEEEECCCCceEEEEcccCCCCCCCCCceeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEE
Q 008873 61 LGVVSAAGGPVSWMDLQCGGTDQNYDEEYLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVI 128 (550)
Q Consensus 61 l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l 128 (550)
|.+||+++++.... + ..-...+..++| |+++++...... .|.+.+...+.....
T Consensus 37 i~vWd~~~~~~~~~-l-------~~H~~~V~~v~~--~~~~l~s~s~D~----~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 37 IKIWDKNTLECKRI-L-------TGHTGSVLCLQY--DERVIITGSSDS----TVRVWDVNTGEMLNT 90 (293)
T ss_dssp EEEEESSSCCEEEE-E-------CCCSSCEEEEEC--CSSEEEEEETTS----CEEEEESSSCCEEEE
T ss_pred EEEEECCCCcEEEE-E-------ecCCCCEeeeec--ccceeecccccc----ccccccccccccccc
Confidence 57889998876543 2 122334555555 777776654332 266777777765443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=82.78 E-value=13 Score=31.43 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=54.6
Q ss_pred eeEEEEECCCCeEEEEEEecCCCceEEEEEECCCCceEEEEEeecCceeeccCccccCCCCCccCCCcEEEEEccCCccE
Q 008873 89 YLARVNWMHGNILTAQVLNRSQTKLKVLKFDIKTGQRKVILVEELDSWVNLHDCFTPLDKGVTKYSGGFIWASEKTGFRH 168 (550)
Q Consensus 89 ~~~~~~wspDg~~i~~~~~r~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~g~~~ 168 (550)
....++..++|.+++. ... ...|++++.++.....+ ...+-. -.|. ..+.++++-+|+++..+...
T Consensus 158 ~~~~i~~d~~g~i~v~-d~~---~~~V~~~d~~G~~~~~~---g~~g~~-----~~P~--giavD~~G~i~Vad~~~~~~ 223 (279)
T d1q7fa_ 158 FPNGVVVNDKQEIFIS-DNR---AHCVKVFNYEGQYLRQI---GGEGIT-----NYPI--GVGINSNGEILIADNHNNFN 223 (279)
T ss_dssp SEEEEEECSSSEEEEE-EGG---GTEEEEEETTCCEEEEE---SCTTTS-----CSEE--EEEECTTCCEEEEECSSSCE
T ss_pred ccceeeeccceeEEee-ecc---ccceeeeecCCceeeee---cccccc-----cCCc--ccccccCCeEEEEECCCCcE
Confidence 3445677888874432 222 23578888765432222 111000 0010 00234555466677655567
Q ss_pred EEEEeCCCceeeccccc-Ce-EEEEEEeEeecCCEEEEEEcCCCCceeEEEEE
Q 008873 169 LYLHDINGTCLGPITEG-DW-MVEQIVGVNEASGQVYFTGTLDGPLESHLYCA 219 (550)
Q Consensus 169 l~~~~~~~~~~~~lT~~-~~-~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v 219 (550)
|.+++.+|.-.+.+..+ +. ....+ .+++|| .||+.. .++ ...+|+.
T Consensus 224 v~~f~~~G~~~~~~~~~~~~~~p~~v-av~~dG-~l~V~~-~n~--~v~~fr~ 271 (279)
T d1q7fa_ 224 LTIFTQDGQLISALESKVKHAQCFDV-ALMDDG-SVVLAS-KDY--RLYIYRY 271 (279)
T ss_dssp EEEECTTSCEEEEEEESSCCSCEEEE-EEETTT-EEEEEE-TTT--EEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCCCCEeEE-EEeCCC-cEEEEe-CCC--eEEEEEe
Confidence 88888877544444322 11 12333 378887 466654 333 3566653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=81.79 E-value=14 Score=31.18 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=53.3
Q ss_pred CCcEEEEEccCCccEEEEEeCCCceeeccccc-CeEEEEEEeEeecCCEEEEEEcCCCCceeEEEEEEeCCCCCCCCCCC
Q 008873 154 SGGFIWASEKTGFRHLYLHDINGTCLGPITEG-DWMVEQIVGVNEASGQVYFTGTLDGPLESHLYCAKLYPDWNHTLEAP 232 (550)
Q Consensus 154 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~lT~~-~~~~~~~~~~s~dg~~l~f~~~~~~~~~~~l~~v~~~~~g~~~~~~~ 232 (550)
+++-+++.+. +...+++++.++...+.+... ..........+++| .+|++.... ..|+..+. +|. ..
T Consensus 123 ~~G~i~v~~~-~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d~~~----~~V~~~d~--~G~----~~ 190 (279)
T d1q7fa_ 123 NKGRIIVVEC-KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRA----HCVKVFNY--EGQ----YL 190 (279)
T ss_dssp TTSCEEEEET-TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGG----TEEEEEET--TCC----EE
T ss_pred cCCcEEEEee-ccceeeEeccCCceeecccccccccccceeeeccce-eEEeeeccc----cceeeeec--CCc----ee
Confidence 3443444443 345678888777544433211 11111122356665 577765543 35666676 553 12
Q ss_pred eeeCCC---CceEEEEECCCCCEEEEeecCCCCCCEEEEEEcCCCceeEec
Q 008873 233 VKLTNG---KGKHVAVLDHNMRNFVDFHDSLDSPPRILLCSLQDGSLVLPL 280 (550)
Q Consensus 233 ~~lt~~---~~~~~~~~s~dg~~l~~~~s~~~~p~~l~~~~~~~g~~~~~l 280 (550)
..+-.. ..-..++++++|+.++ + ...+. ..+.+++. +|+.++.+
T Consensus 191 ~~~g~~g~~~~P~giavD~~G~i~V-a-d~~~~-~~v~~f~~-~G~~~~~~ 237 (279)
T d1q7fa_ 191 RQIGGEGITNYPIGVGINSNGEILI-A-DNHNN-FNLTIFTQ-DGQLISAL 237 (279)
T ss_dssp EEESCTTTSCSEEEEEECTTCCEEE-E-ECSSS-CEEEEECT-TSCEEEEE
T ss_pred eeecccccccCCcccccccCCeEEE-E-ECCCC-cEEEEECC-CCCEEEEE
Confidence 222111 1235567889997443 2 22222 35666664 67644443
|