Citrus Sinensis ID: 008895
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | 2.2.26 [Sep-21-2011] | |||||||
| Q84P23 | 562 | 4-coumarate--CoA ligase-l | yes | no | 0.976 | 0.953 | 0.513 | 1e-160 | |
| Q8RU95 | 598 | 4-coumarate--CoA ligase-l | yes | no | 0.956 | 0.877 | 0.489 | 1e-145 | |
| Q7F1X5 | 542 | 4-coumarate--CoA ligase-l | yes | no | 0.930 | 0.942 | 0.479 | 1e-139 | |
| Q84P21 | 546 | 4-coumarate--CoA ligase-l | no | no | 0.952 | 0.957 | 0.463 | 1e-132 | |
| P0C5B6 | 550 | 4-coumarate--CoA ligase-l | no | no | 0.952 | 0.950 | 0.447 | 1e-127 | |
| Q3E6Y4 | 552 | 4-coumarate--CoA ligase-l | no | no | 0.952 | 0.947 | 0.44 | 1e-126 | |
| Q84P25 | 565 | 4-coumarate--CoA ligase-l | no | no | 0.936 | 0.909 | 0.457 | 1e-123 | |
| Q10S72 | 552 | 4-coumarate--CoA ligase-l | no | no | 0.961 | 0.956 | 0.448 | 1e-122 | |
| Q84P26 | 550 | 4-coumarate--CoA ligase-l | no | no | 0.956 | 0.954 | 0.427 | 1e-120 | |
| Q69RG7 | 558 | 4-coumarate--CoA ligase-l | no | no | 0.947 | 0.931 | 0.453 | 1e-119 |
| >sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 564 bits (1454), Expect = e-160, Method: Compositional matrix adjust.
Identities = 288/561 (51%), Positives = 394/561 (70%), Gaps = 25/561 (4%)
Query: 7 QLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLR------ATLPWRDDDTVA 60
+L D SGF+ T +HSLRP + LPP D P+SA ++ SL AT +
Sbjct: 9 RLIDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTY 68
Query: 61 LINSVTGLRVSFSEFTRRTNSLA-SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
L+NS +G +++ E RR SLA S + L+ + AF+LS +S++IP+LY +L+S+G
Sbjct: 69 LVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIG 128
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDSMTMS 177
V++SPANP+ +ESE+S Q+++S PVIAFATS V KL + L T+L+DS EF +S
Sbjct: 129 VVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEF----LS 184
Query: 178 WNSKHELD-----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV 232
W ++ + + +V QSD AAI++SSGTTGRVKGV+LTHRNL A+ A S + +
Sbjct: 185 WLNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQ-- 242
Query: 233 SPA----VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVT 288
P V LF++P FH++G RA +L ET V++ RF+L+ M KAVE+++VT V+
Sbjct: 243 DPVNYDRVGLFSLPLFHVFGFMMMIRAISLGETLVLLGRFELEAMFKAVEKYKVTGMPVS 302
Query: 289 PPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348
PP++VA+ K T YDL SL ++ CG APLGKD F KFP V +VQ YGLTES+
Sbjct: 303 PPLIVALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGP 362
Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
T GP+E ++GS GR+S +EAKIVDP TG+SLPPGK GEL +RGP IMKGYVG +
Sbjct: 363 AASTFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEK 422
Query: 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468
++ T+ +GW++TGDLCY D + FL+IVDRLK+LIKYK YQV P ELE +L S+ +V D
Sbjct: 423 ASAETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVELEQILHSNPDVID 482
Query: 469 AAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAA 528
AAV+P+PDE+AG++PMAF+VR+P S+LNEA+I++FVA+QV+PYKK+RRVAFINAIPK+ A
Sbjct: 483 AAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRVAFINAIPKNPA 542
Query: 529 GKILRMELRKVAVPSGSSCRL 549
GKILR EL K+AV G++ +L
Sbjct: 543 GKILRRELTKIAV-DGNASKL 562
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Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q8RU95|4CLL6_ORYSJ 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/549 (48%), Positives = 356/549 (64%), Gaps = 24/549 (4%)
Query: 11 TKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLP--WRDDDTVALINSVTGL 68
++SGF +AT+TFHSLR LPPE+ P++ Y SL ++ P AL+++ TG+
Sbjct: 40 SRSGFCAATRTFHSLRSVGPLPPEELPLTVAAYAFSLLSSAPPLVVAGRGPALVDAATGI 99
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
VS+ F R LA L L D A V+S + +++ +LYF+L+S+GV++SPANP
Sbjct: 100 AVSYPAFVARVRFLAGGLWCSLGLRPGDVALVVSPSCLDVAVLYFALMSIGVVVSPANPA 159
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
+T E + Q++LS P IAF V +L + R ++I S FD + + +
Sbjct: 160 STADEYAHQVRLSRPAIAFVAPEVAARLPRHVSR-VVIGSEVFDRLASASAAGGWAAPPA 218
Query: 189 VC--QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-------------ASSFASSPKRVS 233
V Q AA++YSSGTTGRVK V +THRNL A + A++ A K
Sbjct: 219 VAMKQPSTAALLYSSGTTGRVKAVAITHRNLIAQISAYNAIRETVAREAATDAGKGKPPP 278
Query: 234 ------PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
AV LF +P FH+ G R + ETAVVM+RFDL +AVE +RVT +
Sbjct: 279 PSPSPPAAVTLFPLPLFHVMGFGLLTRTISSGETAVVMRRFDLAAAARAVERYRVTKLSA 338
Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
PP+VVA++K DLSSL + G APLG++ FA+ FP V +VQ+YGLTEST
Sbjct: 339 APPVVVALTKSDEARRRDLSSLVAIVVGGAPLGREVSQRFATVFPSVQIVQSYGLTESTG 398
Query: 348 GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEP 407
V GP+E +GS GRL+ ++AKIVD TG+ L PG+ GEL IRGP +MKGYVG+P
Sbjct: 399 PVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRGPVVMKGYVGDP 458
Query: 408 EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467
E T+AT+ PDGW++TGDLCY +EDG+L++VDRLK+LIKYKGYQV PAELEH+L S E+A
Sbjct: 459 EATAATITPDGWLKTGDLCYFNEDGYLYVVDRLKELIKYKGYQVPPAELEHILQSRPEIA 518
Query: 468 DAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSA 527
DAAV+PYPDEEAGQ+PMAFVVRQP + L E ++M VA+ V+PYKK+RRVAF+NAIPKS
Sbjct: 519 DAAVVPYPDEEAGQLPMAFVVRQPGAYLTEQQVMNCVAKHVAPYKKVRRVAFVNAIPKSP 578
Query: 528 AGKILRMEL 536
AGKILR EL
Sbjct: 579 AGKILRREL 587
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Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q7F1X5|4CLL5_ORYSJ 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/553 (47%), Positives = 359/553 (64%), Gaps = 42/553 (7%)
Query: 9 FDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSL--RATLPWRDDDTVALINSVT 66
D++SGF +AT+ FHS R P DLPPE P++A Y SL +TLP R AL+++ T
Sbjct: 15 IDSRSGFCAATRIFHSTRAPGDLPPESLPMTAAAYAFSLLSSSTLPGRP----ALVDAAT 70
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G+ +S+ F SLA L L D A V++ + +E+P+L F+L+S+G ++SPAN
Sbjct: 71 GIAISYPSFLAAVRSLAGGLWCSLGLRPGDVALVVAPSRLEVPVLDFALMSIGAVVSPAN 130
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
PV+T E + Q+ LS PV+AFA V KL + R ++I S E+ + S +
Sbjct: 131 PVSTPEEYAHQVALSRPVVAFAAPEVAAKLPE-HVRCVVIGSDEYGRLAASDGRRAAAPA 189
Query: 187 AKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------------ 233
A QSD AA++YSSGTTGRVK V +THRNL A + S A + ++V+
Sbjct: 190 AVAVKQSDTAAVLYSSGTTGRVKAVAITHRNLIA-LMSLHADNREKVAREAAEAGEEPPP 248
Query: 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
PAV L +P FH++G R+ ++ ET+V+M+RFD L+A+E +RVT PP++V
Sbjct: 249 PAVTLLPIPLFHVFGFMMVLRSVSMGETSVLMERFDFIAALRAIERYRVTLLPAAPPVLV 308
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
AM K DLSSL + G APLG++ FAS FP V LVQ YGLTES+ V TV
Sbjct: 309 AMVKYEEARRRDLSSLLVIGIGGAPLGREVAEQFASVFPNVELVQGYGLTESSGAVAATV 368
Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSAT 413
GP+E + +GS G+L + L+AKIVDP TG YVG+ E T+AT
Sbjct: 369 GPEESKAYGSVGKLGSHLQAKIVDPSTG---------------------YVGDDEATAAT 407
Query: 414 LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473
+ +GW++TGDLCY +EDGFL+IVDRLK+LIKYKGYQV PAELEH+L SH +ADAAVIP
Sbjct: 408 VDSEGWLKTGDLCYFNEDGFLYIVDRLKELIKYKGYQVPPAELEHILQSHPGIADAAVIP 467
Query: 474 YPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILR 533
YPDEEAG++PMAF+VRQP S++ + ++M++VA+QV+PYKK+RRVAF+ AIPKS AGKILR
Sbjct: 468 YPDEEAGELPMAFIVRQPGSNITKEQVMDYVAKQVAPYKKVRRVAFVTAIPKSPAGKILR 527
Query: 534 MELRKVAVPSGSS 546
EL + A+ G+S
Sbjct: 528 RELVQQALSMGAS 540
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Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/544 (46%), Positives = 349/544 (64%), Gaps = 21/544 (3%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
+++SGF ++ TF+S R PI LPP + + ++SS +A I++ TG
Sbjct: 5 NSRSGFCNSNSTFYSKRTPIPLPP-NPSLDVTTFISS------QAHRGRIAFIDASTGQN 57
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
++F+E R S+A L + + K +LS NSI P++ S++SLG II+ NP+N
Sbjct: 58 LTFTELWRAVESVADCLSEIG-IRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLN 116
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDSM--------TMSWN 179
T +EI++QI+ SNPV+AF TS ++ K+ A K +L+D DS+ M
Sbjct: 117 TSNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKE 176
Query: 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF 239
+ +V Q D A ++YSSGTTG KGV+ +HRNL A V + +
Sbjct: 177 PSGNRVKERVDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQRFIC 236
Query: 240 TMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
T+P FHIYGL F A T +V+ +F++ M+ A+ +++ T + PPI+VAM G
Sbjct: 237 TVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNG 296
Query: 299 GST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
YDLSS+ TV CG APL K+ FA K+P V ++Q YGLTEST T +
Sbjct: 297 ADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTDTVE 356
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
E RR+G+ G+LSA +E +IVDP TG L P + GEL ++GP+IMKGY E TS+TL
Sbjct: 357 ESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSSTLDS 416
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPD 476
+GW+RTGDLCYIDEDGF+F+VDRLK+LIKYKGYQVAPAELE LLL+H E+ DAAVIP+PD
Sbjct: 417 EGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIPFPD 476
Query: 477 EEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
+E GQ PMA+VVR+ SSL+E IMEFVA+QV+PYK+IR+VAF+++IPK+ +GKILR +L
Sbjct: 477 KEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKILRKDL 536
Query: 537 RKVA 540
K+A
Sbjct: 537 IKIA 540
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Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/548 (44%), Positives = 348/548 (63%), Gaps = 25/548 (4%)
Query: 8 LFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG 67
+ D +SGF + TF+S R P+ LPP + V++ ++ P R A I++ TG
Sbjct: 9 IVDPRSGFCKSNSTFYSKRQPLSLPP-----NLSRDVTTFISSQPHRGK--TAFIDAATG 61
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
++FS+ R + +A L + + + D +LS NSI IP++ S++SLG + + AN
Sbjct: 62 QCLTFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANT 121
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT--------MSWN 179
+NT EIS+QI SNP + F T + KL + +L D + +T +S
Sbjct: 122 LNTSGEISKQIADSNPTLVFTTRQLAPKLP-VAISVVLTDDEVYQELTSAIRVVGILSEM 180
Query: 180 SKHELD----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
K E R +V Q D A ++YSSGTTG KGV+ +HRNLTA VA + + KR
Sbjct: 181 VKKEPSGQRVRDRVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKR--DD 238
Query: 236 VMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
+ + T+P FH YGL F AL T V+++RF L M+ AVE+ R T A+ PP++VA
Sbjct: 239 IFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVA 298
Query: 295 MSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
M YDLSSL+TV CG APL K+ F K+P V ++Q Y LTES G T
Sbjct: 299 MINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGAFT 358
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
+E RR+G+ G L++ +EA+IVDP TG + + GEL ++GP+I KGY E T+
Sbjct: 359 NSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEATNE 418
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
T+ +GW++TGDLCYIDEDGFLF+VDRLK+LIKYKGYQV PAELE LL++H ++ DAAVI
Sbjct: 419 TINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLITHPDILDAAVI 478
Query: 473 PYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKIL 532
P+PD+EAGQ PMA+VVR+ S+L+E ++++F+++QV+PYKKIR+V+FIN+IPK+A+GK L
Sbjct: 479 PFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVSFINSIPKTASGKTL 538
Query: 533 RMELRKVA 540
R +L K+A
Sbjct: 539 RKDLIKLA 546
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q3E6Y4|4CLL3_ARATH 4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/550 (44%), Positives = 349/550 (63%), Gaps = 27/550 (4%)
Query: 8 LFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG 67
+ D +SGF + TF+S R P+ LPP ++D V++ ++ P R T A I++ TG
Sbjct: 9 IVDPRSGFCKSNSTFYSKRNPLCLPPN----PSLD-VTTFISSQPQRG--TTAFIDASTG 61
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
R++FS+ R + +A L + + + D +LS NSI IP++ S++SLG +++ AN
Sbjct: 62 HRLTFSDLWRVVDRVADCLYHEVGIRRGDVVLILSPNSIYIPVVCLSVMSLGAVVTTANT 121
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPE--------------FDS 173
+NT EIS+QI SNP + F TS + KLA +L D + S
Sbjct: 122 LNTSGEISKQIAQSNPTLVFTTSQLAPKLAA-AISVVLTDEEDEKRVELTSGVRVVGILS 180
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233
M + + R +V Q D A ++YSSGTTG KGV+ +HRNLTA VA KR
Sbjct: 181 EMMKKETSGQRVRDRVNQDDTAMMLYSSGTTGTSKGVISSHRNLTAYVAKYIDDKWKR-- 238
Query: 234 PAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV 292
+ + T+P FH +GL F + A T V+++RF L M++AVE+++ T ++ PP++
Sbjct: 239 DEIFVCTVPMFHSFGLLAFAMGSVASGSTVVILRRFGLDDMMQAVEKYKATILSLAPPVL 298
Query: 293 VAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
VAM G YDL+SL V CG APL K+ + +F K+P V + Q Y LTES
Sbjct: 299 VAMINGADQLKAKYDLTSLRKVRCGGAPLSKEVMDSFLEKYPTVNIFQGYALTESHGSGA 358
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT 410
T +E ++G+ G LS+G+EA+IVDP+TG + + GEL ++GP+I KGY G E T
Sbjct: 359 STESVEESLKYGAVGLLSSGIEARIVDPDTGRVMGVNQPGELWLKGPSISKGYFGNEEAT 418
Query: 411 SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470
+ T+ +GW++ GDLCYIDEDGFLF+VDRLK+LIKYKGYQV PAELE LL++H + DAA
Sbjct: 419 NETINLEGWLKLGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLIAHPHILDAA 478
Query: 471 VIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGK 530
VIP+PD EAGQ PMA+V R+P S+L+E E+++F++ QV+PYKKIR+VAFI++IPK+A+GK
Sbjct: 479 VIPFPDREAGQYPMAYVARKPESNLSEKEVIDFISNQVAPYKKIRKVAFISSIPKTASGK 538
Query: 531 ILRMELRKVA 540
LR +L K++
Sbjct: 539 TLRKDLIKLS 548
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P25|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 254/555 (45%), Positives = 345/555 (62%), Gaps = 41/555 (7%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
D KSGF +T F+S R P+ LPP +D V+S A+ P R +++VTG R
Sbjct: 22 DRKSGFCESTSIFYSKREPMALPPNQF----LD-VTSFIASQPHRGK--TVFVDAVTGRR 74
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+SF E +A L + + K + +LS NSI PI+ S++SLG II+ ANP+N
Sbjct: 75 LSFPELWLGVERVAGCLYALG-VRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPIN 133
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT---ILIDSPEFDSMTMSWNSKHELD- 185
T EIS+QI S PV+AF T +V KLA + +L+D ++ + S+ + +L
Sbjct: 134 TSDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMD--DYHVPSQSYGDRVKLVG 191
Query: 186 ---------------RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS---SFAS 227
+ +V Q D AA++YSSGTTG KGVML+HRNL A V + F
Sbjct: 192 RLETMIETEPSESRVKQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIALVQAYRARFGL 251
Query: 228 SPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAA 286
+ + T+P HI+G F AL T VV+ +FD+ +L AVE R ++ +
Sbjct: 252 EQRTIC------TIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLS 305
Query: 287 VTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
+ PPIVVAM G + YDLSSL TV G APL ++ F +PKV ++Q YGLTE
Sbjct: 306 LVPPIVVAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTE 365
Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV 404
STA +E +R+G++G L+ +E KIVDP+TG L + GEL IR PT+MKGY
Sbjct: 366 STAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYF 425
Query: 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHR 464
E T++T+ +GW++TGDLCYID DGF+F+VDRLK+LIK GYQVAPAELE LLL+H
Sbjct: 426 KNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAELEALLLAHP 485
Query: 465 EVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIP 524
E+ADAAVIP PD +AGQ PMA++VR+ S+L+E+EIM FVA+QVSPYKKIR+V F+ +IP
Sbjct: 486 EIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVTFLASIP 545
Query: 525 KSAAGKILRMELRKV 539
K+ +GKILR EL K+
Sbjct: 546 KNPSGKILRRELTKL 560
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 249/555 (44%), Positives = 349/555 (62%), Gaps = 27/555 (4%)
Query: 4 KTPQL-FDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI 62
++P++ D +SG+ +AT+TF S R + LP D + V +++S R + VAL+
Sbjct: 3 RSPEMEVDARSGYCAATRTFRSRRADVPLP-ADPEVDVVSFLASRRHS------GVVALV 55
Query: 63 NSVTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI 121
++ TG R++F+E R AS L + L K A +LS NS+ P+ + +SLG +
Sbjct: 56 DAATGRRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVAALAAMSLGAV 115
Query: 122 ISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-RTILIDSPEF--DS----- 173
++ ANP+NT +EI++Q+ + PV+AF T ++ KL + R +L++S DS
Sbjct: 116 LTTANPLNTPAEIAKQVADARPVLAFTTRELLPKLPRAHDLRVVLLESARLPGDSSDPRI 175
Query: 174 -MTMSWNSKHELDRAK----VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
T+ S D A+ V Q D A ++YSSGTTG KGV+ THR+L + V
Sbjct: 176 VATIEEISATTPDPARRKDRVTQDDPATLLYSSGTTGPSKGVVATHRSLISMVQIIMTRF 235
Query: 229 PKRVSPAVMLF--TMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
S F T+P FH+YGL F T VV+ +++L ML+++ + VT+
Sbjct: 236 RLEGSDKTETFLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGVTYL 295
Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
+ PPI+VAM L + V G APLGK+ I F K+P+V ++Q YGLTES
Sbjct: 296 PLVPPILVAMV--AHPKPLPLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTES 353
Query: 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVG 405
TA T +E RR+G+ G LS EAKIVDP++G++LP + GEL IRGP +MKGY
Sbjct: 354 TAIGASTDSAEESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKGYFK 413
Query: 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHRE 465
E T +TL PDGW++TGDLCYIDEDG+LF+VDRLK+LIKYKGYQV PAELE LLL+H E
Sbjct: 414 NAEATQSTLTPDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQVPPAELEALLLTHPE 473
Query: 466 VADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPK 525
V D AVIP+PD E GQ PMA++VR+ S+L+E E+MEFVA+QV+PYKK+R+VAF+ IPK
Sbjct: 474 VTDVAVIPFPDREVGQFPMAYIVRKKGSNLSEREVMEFVAKQVAPYKKVRKVAFVTDIPK 533
Query: 526 SAAGKILRMELRKVA 540
+A+GKILR +L K+A
Sbjct: 534 NASGKILRKDLIKLA 548
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q84P26|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/557 (42%), Positives = 343/557 (61%), Gaps = 32/557 (5%)
Query: 3 KKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI 62
+++ L D ++GF ++ TF+S R P+ LP +++ + ++SS +R A I
Sbjct: 5 QRSSSLIDPRNGFCTSNSTFYSKRKPLALPSKES-LDITTFISSQT----YRGK--TAFI 57
Query: 63 NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVII 122
++ T R+SFS+ + +A L + + + D VLS N+I IPI+ S++SLG ++
Sbjct: 58 DAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVL 117
Query: 123 SPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-------- 174
+ ANP+NT SEI RQI SNP +AF T + K+A +I+++ E D++
Sbjct: 118 TTANPLNTASEILRQIADSNPKLAFTTPELAPKIAS-SGISIVLERVE-DTLRVPRGLKV 175
Query: 175 ------TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
M + R +V + D A ++YSSGTTGR KGV +H NL A VA + +
Sbjct: 176 VGNLTEMMKKEPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVAR-YIAE 234
Query: 229 PKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
P + T+P FH +GL F AL T V++ RFDL M+ AVE++R T +
Sbjct: 235 PFEQPQQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLIL 294
Query: 288 TPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
PP++V M YD+S L TV CG APL K+ F K+P V + Q Y LTES
Sbjct: 295 VPPVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTES 354
Query: 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV- 404
+E RR+G+ G LS G+EA+IVDP TG + + GEL ++GP+I KGY
Sbjct: 355 NGAGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFR 414
Query: 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHR 464
E E+ ++ +GW++TGDLCYID DGFLFIVDRLK+LIKYKGYQV PAELE LLL+H
Sbjct: 415 NEEEIITS----EGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELEALLLNHP 470
Query: 465 EVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIP 524
++ DAAVIP+PD+EAGQ PMA+V R+P S+L E ++++F+++QV+PYKKIR+VAFI++IP
Sbjct: 471 DILDAAVIPFPDKEAGQFPMAYVARKPESNLCEKKVIDFISKQVAPYKKIRKVAFIDSIP 530
Query: 525 KSAAGKILRMELRKVAV 541
K+ +GK LR +L K A+
Sbjct: 531 KTPSGKTLRKDLIKFAI 547
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q69RG7|4CLL7_ORYSJ 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 244/538 (45%), Positives = 331/538 (61%), Gaps = 18/538 (3%)
Query: 11 TKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYV-----SSLRATLPWRDDDTVALINSV 65
T++G+ +ATK+F SLRPP+ LPP D P+S ++ S ++ AL+++
Sbjct: 15 TRTGYCAATKSFRSLRPPVPLPPPDVPLSFPEFAFSLLPRSSSSSSSSLLPANPALVDAA 74
Query: 66 TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125
TG VSF F R +LA L++ L D AFVL+ +++P+LYF+LLS+G ++SPA
Sbjct: 75 TGEAVSFQAFLSRVRALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFALLSIGAVVSPA 134
Query: 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSW---NSKH 182
NP T +E+SR + LS +AFA SS KL +L+DSP F S+ M +
Sbjct: 135 NPALTPAEVSRLVSLSGASVAFAVSSTATKLPAGLTTVVLLDSPHFRSLLMDCGQAQGQE 194
Query: 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
L V QS+ AAI YSSGTTGRVK L HR+ A VA F + + L P
Sbjct: 195 PLPVVVVRQSETAAIQYSSGTTGRVKAAALPHRSFIAMVAG-FHALRAKAREVRTLLGAP 253
Query: 243 YFHIYGLFFCFRAAALMETAVVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
FH G F + AL T VV+ R ++ +++A E + V +PP+V+ M+K
Sbjct: 254 MFHSMGFLFVLQGVALGATTVVVTDAVARAGIRGLVEAAERWAVMDMTASPPVVLGMTK- 312
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
L +LE + CG APL I F +FP V L YG TE+ G+ R + +EC
Sbjct: 313 ---QRCRLPALERITCGGAPLPAPAIERFRRRFPHVDLCMGYGSTEA-GGISRMISQEEC 368
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418
GS GR++ +E KIVD TG LP G++GEL +RGP +M GYVG+ E + T +G
Sbjct: 369 NHIGSAGRVTENVEVKIVDHVTGKPLPAGQQGELWVRGPAVMTGYVGDNEANATTFNSEG 428
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEE 478
W++TGDLCYID+DGFLF+VDRLK+LIKYK YQV PAELE +L S ++ DAAV+PYP EE
Sbjct: 429 WLKTGDLCYIDQDGFLFVVDRLKELIKYKAYQVPPAELELVLHSLPQIVDAAVMPYPHEE 488
Query: 479 AGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
AGQ+P+A VV+QP S L EAE+M VA+QV+PYKKIR+V F+++IPKS +GKILR EL
Sbjct: 489 AGQIPVALVVKQPGSKLTEAEVMYNVAKQVAPYKKIRKVLFVDSIPKSPSGKILRREL 546
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| 224133070 | 548 | 4-coumarate-coa ligase [Populus trichoca | 0.985 | 0.987 | 0.660 | 0.0 | |
| 444475573 | 540 | 4-coumarate CoA ligase [Lonicera japonic | 0.983 | 1.0 | 0.653 | 0.0 | |
| 225452165 | 543 | PREDICTED: 4-coumarate--CoA ligase-like | 0.989 | 1.0 | 0.635 | 0.0 | |
| 255536983 | 540 | AMP dependent CoA ligase, putative [Rici | 0.979 | 0.996 | 0.630 | 0.0 | |
| 225452163 | 541 | PREDICTED: 4-coumarate--CoA ligase-like | 0.959 | 0.974 | 0.592 | 0.0 | |
| 296090250 | 513 | unnamed protein product [Vitis vinifera] | 0.934 | 1.0 | 0.606 | 0.0 | |
| 359491536 | 851 | PREDICTED: 4-coumarate--CoA ligase-like | 0.972 | 0.627 | 0.575 | 1e-175 | |
| 356571403 | 541 | PREDICTED: 4-coumarate--CoA ligase-like | 0.963 | 0.977 | 0.589 | 1e-175 | |
| 296090249 | 565 | unnamed protein product [Vitis vinifera] | 0.910 | 0.884 | 0.574 | 1e-175 | |
| 357440909 | 539 | 4-coumarate-coa ligase [Medicago truncat | 0.954 | 0.972 | 0.604 | 1e-174 |
| >gi|224133070|ref|XP_002327954.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224133074|ref|XP_002327955.1| acyl:coa ligase [Populus trichocarpa] gi|222837363|gb|EEE75742.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222837364|gb|EEE75743.1| acyl:coa ligase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/551 (66%), Positives = 436/551 (79%), Gaps = 10/551 (1%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATL-PWRDDDTV 59
M+++ + KSGFNS+ KTFHSLRPPI LPPE+ P SA DY SL A PW D++
Sbjct: 1 MDQQANSPINPKSGFNSSAKTFHSLRPPIHLPPEETPFSAADYALSLHANHSPW--PDSL 58
Query: 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
A+INS T ++S+S+F R SL YLQNVT+L KNDTAF+L NSI++PILYFSLLSLG
Sbjct: 59 AIINSSTSQKLSYSDFIERIKSLTLYLQNVTQLRKNDTAFILCPNSIQVPILYFSLLSLG 118
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TMS- 177
V+ISPANP++TESEIS QI LSNPVIAFA S HKL KLKH TILIDSPEFDS+ TMS
Sbjct: 119 VVISPANPISTESEISHQISLSNPVIAFAISKTCHKLPKLKHGTILIDSPEFDSIITMSP 178
Query: 178 --WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
++ +L++ V QSD+AAIM+SSGTTG+VKGVMLTHRNL A +A + +R SP
Sbjct: 179 ATTTARQDLEKVTVNQSDLAAIMFSSGTTGKVKGVMLTHRNLMAVIAGYYPFKQERKSPT 238
Query: 236 VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
VML+T+PYFH++G F+ F++ AL ET VVM+RFDLK ML+AVE+FRVTH AV PP+VVAM
Sbjct: 239 VMLYTVPYFHVFGFFYSFKSVALSETVVVMERFDLKKMLRAVEKFRVTHLAVAPPVVVAM 298
Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355
+K TDGYDL SLETV CG APLGKD + FA +FP V L Q YGLTEST + R+ P
Sbjct: 299 AKSDLTDGYDLRSLETVGCGGAPLGKDVMKVFADRFPTVDLWQGYGLTESTGVLSRSNSP 358
Query: 356 DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415
+E R WGS GRL+A EAKIVD +TGD+LPPGK+GEL +RG TIMKGYVG+PE TS TL
Sbjct: 359 EESRHWGSVGRLTACCEAKIVDADTGDALPPGKQGELWVRGSTIMKGYVGDPEATSTTLD 418
Query: 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475
PDGW+RTGDLCYIDE+GFLF+VDRLK+LIKYKGYQVAPAELE LL SH E+ADAAVIPYP
Sbjct: 419 PDGWLRTGDLCYIDEEGFLFVVDRLKELIKYKGYQVAPAELEQLLHSHPEIADAAVIPYP 478
Query: 476 DEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRME 535
DEEAGQ+PMAFVV+QP S +NE +M+FVA+QV+PYKK+RRV F++AIPKS AGK LR
Sbjct: 479 DEEAGQVPMAFVVKQPQSRINERGVMDFVAKQVAPYKKVRRVEFVSAIPKSPAGKELR-- 536
Query: 536 LRKVAVPSGSS 546
+ V +P SS
Sbjct: 537 -KMVPIPFPSS 546
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|444475573|gb|AGE10595.1| 4-coumarate CoA ligase [Lonicera japonica] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/549 (65%), Positives = 431/549 (78%), Gaps = 9/549 (1%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
MEK FD SGF+S TKTFHSL PP+ LPPE A IS+ Y SL+ T PW D+
Sbjct: 1 MEK-----FDPNSGFSSQTKTFHSLTPPLPLPPETALISSATYSLSLQLTSPW--PDSTX 53
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LI+S TG R+S+S+FT +TN+L+S LQ+ LSK D AF+LS NS++IP+LYFSLLSLGV
Sbjct: 54 LIDSATGQRLSYSQFTTQTNNLSSSLQSHLGLSKGDVAFILSLNSLQIPLLYFSLLSLGV 113
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
IISP+NP +TESEISRQI+LS PVIAFATS+ HK+ L+H T+LIDSPEF SMT S S
Sbjct: 114 IISPSNPSSTESEISRQIKLSKPVIAFATSATSHKIPALRHGTVLIDSPEFVSMTTS--S 171
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
EL V Q D+AAIMYSSGTTG+VKGVMLTHRNLTA VA+ A P+R SPAV+L+T
Sbjct: 172 GRELSCVGVSQCDIAAIMYSSGTTGQVKGVMLTHRNLTAIVANYHALRPERKSPAVVLYT 231
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
MPYFH+ GLF C ++ AL ET VVM+RF+LK ML+AVEE RVT+ A+ PP+VVAM+K
Sbjct: 232 MPYFHVIGLFCCMKSVALSETVVVMERFNLKRMLRAVEELRVTNVAMAPPVVVAMTKAEV 291
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
T YDL SLE CG APLGKD I AF +KFP V+L Q YG+TE+ FR V P+E R
Sbjct: 292 TKEYDLKSLEGFGCGGAPLGKDVIAAFTAKFPGVLLTQGYGMTETAGPAFRAVTPEESFR 351
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
WGS GRL A EA+IVDP+TG +LPPGK+GEL ++GP MKGYVG+P+ TS TL+ DGW+
Sbjct: 352 WGSVGRLQANCEARIVDPDTGTALPPGKQGELWLKGPITMKGYVGDPKATSETLVLDGWL 411
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480
RTGDLCY DE+GFLF+VDRLK+LIKYKGYQV PAELE LL SH EV DAAVIPYPD+EAG
Sbjct: 412 RTGDLCYFDEEGFLFVVDRLKELIKYKGYQVPPAELEQLLQSHPEVVDAAVIPYPDDEAG 471
Query: 481 QMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
Q+PMAFVV+ P S+L+EA++M FVA+QV+PYKKIRRV+F+++IPKS AGKILR ELRKVA
Sbjct: 472 QIPMAFVVKHPQSNLDEAQVMSFVAKQVAPYKKIRRVSFVSSIPKSPAGKILRKELRKVA 531
Query: 541 VPSGSSCRL 549
V G S +L
Sbjct: 532 VHQGFSSKL 540
|
Source: Lonicera japonica Species: Lonicera japonica Genus: Lonicera Family: Caprifoliaceae Order: Dipsacales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452165|ref|XP_002270592.1| PREDICTED: 4-coumarate--CoA ligase-like 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/549 (63%), Positives = 428/549 (77%), Gaps = 6/549 (1%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
MEK + D KSGF SATKTFHSL+P ++LPP+ +SA Y SLR+ L D+ A
Sbjct: 1 MEKSNLHI-DPKSGFCSATKTFHSLKPTVELPPQHLLLSADAYAFSLRSGLGC--PDSAA 57
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LINS TG R+ +SEF R+ +LA+YLQ V LSK DTAFVLS+N I++PILYFSLLSLGV
Sbjct: 58 LINSTTGHRLLYSEFALRSKTLAAYLQTVIGLSKGDTAFVLSSNLIQVPILYFSLLSLGV 117
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
IISPANP+NT+SEISR I+L PVIAF+ S+ HKL L HRT++IDS EFDSM
Sbjct: 118 IISPANPINTQSEISRLIELCKPVIAFSISTAAHKLPSLHHRTVIIDSFEFDSMMT--GP 175
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
EL +V QSD+AAIMYSSGTTGRVKGVMLTHRNL A AS R SP V+L+T
Sbjct: 176 IRELVPVEVSQSDLAAIMYSSGTTGRVKGVMLTHRNLIAMTASIHEGQSVRSSPDVLLYT 235
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
+P+FH+ G F+C ++ AL ET VVM+RFDL+ ML VE+F+VTH AV PP++VAM+KG +
Sbjct: 236 VPFFHMIGFFYCVKSVALNETVVVMERFDLRRMLTLVEKFKVTHMAVVPPVLVAMAKGDA 295
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
TD DL+SLE+V+CG APLGKD AF +KFP V + Q YGLTES+ V R + P+ECR
Sbjct: 296 TDNNDLTSLESVSCGGAPLGKDLCQAFTAKFPNVAIRQGYGLTESSGAVSRLLDPEECRH 355
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
WGS GRL+ EAKIVDP+TG +LPP K+GEL +RGP +MKGYVG+ + T TL+ DGW+
Sbjct: 356 WGSVGRLTGIFEAKIVDPDTGLALPPCKQGELWVRGPAVMKGYVGDRKATRETLVSDGWL 415
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480
RTGDLCYID +GFL++VDRLK+LIKYKGYQVAPAELEHLL SH E+ DAAVIPYPDEEAG
Sbjct: 416 RTGDLCYIDGEGFLYVVDRLKELIKYKGYQVAPAELEHLLQSHPEIVDAAVIPYPDEEAG 475
Query: 481 QMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
++PMA+VVR+P SSLNEA++M+F+A+QV+ YKKIRRV F+++IPKS AGKILR ELRK+A
Sbjct: 476 EVPMAYVVRRPQSSLNEAQVMDFIAKQVAAYKKIRRVLFVSSIPKSPAGKILRKELRKLA 535
Query: 541 VPSGSSCRL 549
VP GS +L
Sbjct: 536 VP-GSLSKL 543
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255536983|ref|XP_002509558.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223549457|gb|EEF50945.1| AMP dependent CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/546 (63%), Positives = 414/546 (75%), Gaps = 8/546 (1%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
M++ T D KSGFN TK FHSLRP +DLP EDA IS DY S D ++A
Sbjct: 1 MDQTTSASVDPKSGFNRITKIFHSLRPTVDLPSEDASISVADYALSSSP-----DFGSLA 55
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LI+S +G +S+S+F T SL YL NV +LSKND AFVL S +IPILYFSLLSLGV
Sbjct: 56 LIDSSSGHGISYSDFYLFTKSLTCYLHNVIKLSKNDVAFVLCPKSTKIPILYFSLLSLGV 115
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
IISP+NP+NTE EISRQI LS PVIAFATSS HK+ KL H+TIL+DSPEF+S+ +
Sbjct: 116 IISPSNPLNTELEISRQISLSKPVIAFATSSTAHKIPKLNHKTILLDSPEFNSILTTSCP 175
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
HELD+ V QSD+A I YSSGTTG+VK VMLTHRNLTA V A ++ AV L
Sbjct: 176 THELDKVTVRQSDLAGIFYSSGTTGKVKAVMLTHRNLTAVVGGYLALKQEK---AVTLNP 232
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
+PYFH+YG F+ ++ AL E VVM++F+LK ML+AV+EFRVT AV PPIVV M K G
Sbjct: 233 VPYFHVYGFFYSLKSVALREVVVVMEKFELKKMLRAVQEFRVTQLAVAPPIVVQMVKDGL 292
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
TD YDL SL+ V CGAAPLG+D I AF ++FP V L Q YGLTES+ R GP E
Sbjct: 293 TDCYDLRSLQAVGCGAAPLGRDVIAAFKARFPTVELWQGYGLTESSGVCSRATGPGESHC 352
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
WGS GRL+A + KIV+P+T +L PGK+GEL I+GPTIMKGYVG+PE TSA L DGW+
Sbjct: 353 WGSVGRLTAYCKVKIVNPDTMVALLPGKQGELWIKGPTIMKGYVGDPEATSAALTSDGWL 412
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480
RTGDLCYIDE+GF+FIVDRLK+LIKYKGYQVAPAELE LLLSH E+ADAAVIPYP+EEAG
Sbjct: 413 RTGDLCYIDEEGFVFIVDRLKELIKYKGYQVAPAELEQLLLSHPEIADAAVIPYPNEEAG 472
Query: 481 QMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
Q+P+AF+V+QP SSLNE +IM+FVA+QV+PYKKIRRVAF+N+IPKS +GKILR +LR +
Sbjct: 473 QIPIAFIVKQPQSSLNEKDIMDFVAKQVAPYKKIRRVAFVNSIPKSPSGKILRKDLRDMI 532
Query: 541 VPSGSS 546
+P+ +S
Sbjct: 533 LPAFAS 538
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452163|ref|XP_002270555.1| PREDICTED: 4-coumarate--CoA ligase-like 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/533 (59%), Positives = 410/533 (76%), Gaps = 6/533 (1%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
D +SGF + T+TFHSLRP + LPPE+ +SA Y SLRA P DD+ +INS TG R
Sbjct: 9 DPRSGFCAETRTFHSLRPTVQLPPENVLLSADAYTYSLRAPSP--GDDSPVIINSTTGQR 66
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+S+SEF RR+ +LA+YLQ++ L+K D A++LS N I++P+LYF+LLSLGV++SPANP+N
Sbjct: 67 LSYSEFVRRSKTLAAYLQSIVGLNKGDAAYILSNNLIQVPVLYFALLSLGVVVSPANPIN 126
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
T++E++RQ QL PVIAF S+ VHK+ KL++ TI+IDS EF+ M S + E+ KV
Sbjct: 127 TKAEVARQTQLCRPVIAFTISTAVHKIPKLRYGTIVIDSFEFELMMTS--PRREMVDVKV 184
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
QSD+A IMYSSGTTG VKGVM+THRNL A S K SP V+L +PYFH+YG
Sbjct: 185 SQSDLAGIMYSSGTTGNVKGVMVTHRNLIAMTGSYMQR--KANSPVVLLQIVPYFHVYGF 242
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
+ F+ A+ T V+M+++DL+ + AVE+++VT AV PP+VVAMSK T+G DLSSL
Sbjct: 243 HYVFKCMAMNVTVVIMEKYDLEKTIDAVEKYKVTDLAVAPPVVVAMSKKAVTEGRDLSSL 302
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSA 369
ETVA G APLGK+ I AF +KFP V+ Q YG+TE + + +EC RWGS+G+
Sbjct: 303 ETVASGGAPLGKELIEAFTAKFPGTVISQGYGMTEVIGRISEALDREECSRWGSSGKFPG 362
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
EAKIVD ETG SLPP K GEL ++GP+IMKGYV +P+ TS TL PDGW+RTGDLCYID
Sbjct: 363 IWEAKIVDQETGASLPPLKRGELWVKGPSIMKGYVNDPKATSETLTPDGWLRTGDLCYID 422
Query: 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVR 489
EDGFLFIVDRLK+LIKYKGYQVAPAELEHLL SH ++ DAAVIPYPD+EAGQ+PMAF+VR
Sbjct: 423 EDGFLFIVDRLKELIKYKGYQVAPAELEHLLQSHPQIVDAAVIPYPDDEAGQVPMAFIVR 482
Query: 490 QPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542
+P S L+EA++M+F+A+QV+PYKKIRRV+F+ +IPK+A+GKILR EL+K+++P
Sbjct: 483 RPESKLDEAQVMDFIAKQVAPYKKIRRVSFVTSIPKNASGKILRKELKKISLP 535
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090250|emb|CBI40069.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/549 (60%), Positives = 404/549 (73%), Gaps = 36/549 (6%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
MEK + D KSGF SATKTFHSL+P ++LPP+ +SA Y SLR+ L D+ A
Sbjct: 1 MEKSNLHI-DPKSGFCSATKTFHSLKPTVELPPQHLLLSADAYAFSLRSGLGC--PDSAA 57
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LINS TG R+ +SEF R+ +LA+YLQ V LSK DTAFVLS+N I++PILYFSLLSLGV
Sbjct: 58 LINSTTGHRLLYSEFALRSKTLAAYLQTVIGLSKGDTAFVLSSNLIQVPILYFSLLSLGV 117
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
IISPANP+NT+SEISR I+L PVIAF+ S+ HKL L HRT++IDS EFDSM
Sbjct: 118 IISPANPINTQSEISRLIELCKPVIAFSISTAAHKLPSLHHRTVIIDSFEFDSMMT--GP 175
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
EL +V QSD+AAIMYSSGTTGRVKGVMLTHRNL A AS R SP V+
Sbjct: 176 IRELVPVEVSQSDLAAIMYSSGTTGRVKGVMLTHRNLIAMTASIHEGQSVRSSPDVL--- 232
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
FDL+ ML VE+F+VTH AV PP++VAM+KG +
Sbjct: 233 ---------------------------FDLRRMLTLVEKFKVTHMAVVPPVLVAMAKGDA 265
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
TD DL+SLE+V+CG APLGKD AF +KFP V + Q YGLTES+ V R + P+ECR
Sbjct: 266 TDNNDLTSLESVSCGGAPLGKDLCQAFTAKFPNVAIRQGYGLTESSGAVSRLLDPEECRH 325
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
WGS GRL+ EAKIVDP+TG +LPP K+GEL +RGP +MKGYVG+ + T TL+ DGW+
Sbjct: 326 WGSVGRLTGIFEAKIVDPDTGLALPPCKQGELWVRGPAVMKGYVGDRKATRETLVSDGWL 385
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480
RTGDLCYID +GFL++VDRLK+LIKYKGYQVAPAELEHLL SH E+ DAAVIPYPDEEAG
Sbjct: 386 RTGDLCYIDGEGFLYVVDRLKELIKYKGYQVAPAELEHLLQSHPEIVDAAVIPYPDEEAG 445
Query: 481 QMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
++PMA+VVR+P SSLNEA++M+F+A+QV+ YKKIRRV F+++IPKS AGKILR ELRK+A
Sbjct: 446 EVPMAYVVRRPQSSLNEAQVMDFIAKQVAAYKKIRRVLFVSSIPKSPAGKILRKELRKLA 505
Query: 541 VPSGSSCRL 549
VP GS +L
Sbjct: 506 VP-GSLSKL 513
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491536|ref|XP_002279522.2| PREDICTED: 4-coumarate--CoA ligase-like 9-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 310/539 (57%), Positives = 396/539 (73%), Gaps = 5/539 (0%)
Query: 2 EKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTV-A 60
E D KSGF+ TKT+HSLRPP+ PP+ P+S +YV SL + P +T
Sbjct: 3 EMNGNHWIDPKSGFSPTTKTYHSLRPPVPFPPKHRPLSLAEYVISLLRSAPDSPLETTNV 62
Query: 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
LI++ + R+S+S+F R+ SLA+ LQ +T LSK DTAF+L S++IP++YFSLLSLGV
Sbjct: 63 LIDASSDYRLSYSQFLRQVQSLAASLQRITGLSKGDTAFILCPPSLKIPVIYFSLLSLGV 122
Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
ISP NP+ ++SE+S QI L P IAFA+S HKL L+ T+L+DS EFDSM M+ N
Sbjct: 123 TISPTNPLGSDSEVSHQIHLCKPAIAFASSKTAHKLPSLRLGTVLVDSLEFDSM-MTENG 181
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA---VM 237
R +V QSD AAI+YSSGTTGRVKGV+LTHRNL +A + ++ V
Sbjct: 182 AGYGKRVEVSQSDPAAILYSSGTTGRVKGVLLTHRNLITLIAGFHHNRLEKEEDGPRPVS 241
Query: 238 LFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
LFT+P FH++G F RA +L ET V+M+RFD + MLKAVE++R+T+ V+PP+VVA++K
Sbjct: 242 LFTLPLFHVFGFFMLVRAVSLAETLVLMERFDFENMLKAVEKYRITYMPVSPPLVVALAK 301
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
YDLSSL+ + G APLGK+ F+++FP V +VQ YGLTES G DE
Sbjct: 302 SEFVGKYDLSSLQLLGSGGAPLGKEVSERFSARFPNVQMVQGYGLTESGGGAAGMADLDE 361
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD 417
+R GS GRL +EAKIVDP+TG++LPPG++GEL +RGPTIMKGYVG+ E T+ATL +
Sbjct: 362 AKRHGSVGRLMHDMEAKIVDPKTGEALPPGQQGELWLRGPTIMKGYVGDDEATAATLDQE 421
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477
GW++TGDLCY D DGFLFIVDRLK+LIKYK YQV PAELEHLL S+ E+ADAAVIPYPDE
Sbjct: 422 GWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELEHLLQSNPEIADAAVIPYPDE 481
Query: 478 EAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
EAGQ+PMAFVVR+P SS+ EA++MEF+A+QV+PYKKIRRVAF+N+IPKS AGKILR EL
Sbjct: 482 EAGQIPMAFVVRKPGSSITEAQVMEFIAKQVAPYKKIRRVAFVNSIPKSPAGKILRREL 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571403|ref|XP_003553866.1| PREDICTED: 4-coumarate--CoA ligase-like 9-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 315/534 (58%), Positives = 403/534 (75%), Gaps = 5/534 (0%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
D +SGFN A++ FHSL+PP+ LPP +A SA Y SLR + D T ALI++ TG R
Sbjct: 8 DPRSGFNRASRIFHSLKPPLPLPPPNATFSATTYALSLRRNSLF-PDSTTALIDATTGHR 66
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+S E R +LA+ ++ +LSK DTA +LS N I++PIL F+LLSLGV++SPANP++
Sbjct: 67 LSHYEVINRIETLANNFTSILKLSKGDTALILSPNLIQVPILCFALLSLGVVVSPANPIS 126
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELD--RA 187
T S+++R LS P I F +SVV K RT+L+DSPEFDS+T + H +
Sbjct: 127 TRSDLTRFFHLSKPAIVFTVTSVVEKTQDFHVRTVLLDSPEFDSLTKTRIQIHPPSPLVS 186
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
V QSDVAAI+YSSGTTG +KGV++THRNLTA A A R PAV FTMP+FH+Y
Sbjct: 187 PVTQSDVAAILYSSGTTGMMKGVVMTHRNLTALAAGYDAVRVNRKYPAVFFFTMPFFHVY 246
Query: 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
G FRA L ET V+M+RF L+ ML AVE F VTH AV PP++VA++K T+GYDL
Sbjct: 247 GFTLSFRAMVLSETVVIMERFSLRGMLSAVERFGVTHLAVVPPLMVALTKDSVTNGYDLK 306
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL 367
+LE V CG++PLGK+T AF +KFP V+++Q YGLTESTAGV RT P++ R G+TGRL
Sbjct: 307 TLEGVTCGSSPLGKETAEAFKAKFPNVMILQGYGLTESTAGVART-SPEDANRAGTTGRL 365
Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCY 427
+G+EAKIV+P TG+++ P ++GEL I+ P+IMKGYVG+PE TSATL+ DGW+RTGDLCY
Sbjct: 366 VSGVEAKIVNPNTGEAMFPCEQGELWIKSPSIMKGYVGDPEATSATLV-DGWLRTGDLCY 424
Query: 428 IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFV 487
D +GFL++VDRLK+LIKYKGYQVAPAELE LLSH E+ DAAVIPYPDEEAGQ+PMAFV
Sbjct: 425 FDNEGFLYVVDRLKELIKYKGYQVAPAELEQYLLSHPEINDAAVIPYPDEEAGQVPMAFV 484
Query: 488 VRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541
VRQP SSL+E EI++FVA+QV+PYKKIRRVAF+++IPK+A GKILR +L K+A+
Sbjct: 485 VRQPQSSLSEIEIIDFVAKQVAPYKKIRRVAFVDSIPKNALGKILRKDLNKLAL 538
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090249|emb|CBI40068.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 306/533 (57%), Positives = 392/533 (73%), Gaps = 33/533 (6%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
D +SGF + T+TFHSLRP + LPPE+ +SA Y SLRA P DD+ +INS TG R
Sbjct: 60 DPRSGFCAETRTFHSLRPTVQLPPENVLLSADAYTYSLRAPSP--GDDSPVIINSTTGQR 117
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+S+SEF RR+ +LA+YLQ++ L+K D A++LS N I++P+LYF+LLSLGV++SPANP+N
Sbjct: 118 LSYSEFVRRSKTLAAYLQSIVGLNKGDAAYILSNNLIQVPVLYFALLSLGVVVSPANPIN 177
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
T++E++RQ QL PVIAF S+ VHK+ KL++ TI+IDS EF+ M S + E+ KV
Sbjct: 178 TKAEVARQTQLCRPVIAFTISTAVHKIPKLRYGTIVIDSFEFELMMTS--PRREMVDVKV 235
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
QSD+A IMYSSGTTG VKGVM+THRNL A S K SP V+L
Sbjct: 236 SQSDLAGIMYSSGTTGNVKGVMVTHRNLIAMTGSYMQR--KANSPVVLL----------- 282
Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
Q +DL+ + AVE+++VT AV PP+VVAMSK T+G DLSSL
Sbjct: 283 ----------------QIYDLEKTIDAVEKYKVTDLAVAPPVVVAMSKKAVTEGRDLSSL 326
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSA 369
ETVA G APLGK+ I AF +KFP V+ Q YG+TE + + +EC RWGS+G+
Sbjct: 327 ETVASGGAPLGKELIEAFTAKFPGTVISQGYGMTEVIGRISEALDREECSRWGSSGKFPG 386
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
EAKIVD ETG SLPP K GEL ++GP+IMKGYV +P+ TS TL PDGW+RTGDLCYID
Sbjct: 387 IWEAKIVDQETGASLPPLKRGELWVKGPSIMKGYVNDPKATSETLTPDGWLRTGDLCYID 446
Query: 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVR 489
EDGFLFIVDRLK+LIKYKGYQVAPAELEHLL SH ++ DAAVIPYPD+EAGQ+PMAF+VR
Sbjct: 447 EDGFLFIVDRLKELIKYKGYQVAPAELEHLLQSHPQIVDAAVIPYPDDEAGQVPMAFIVR 506
Query: 490 QPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542
+P S L+EA++M+F+A+QV+PYKKIRRV+F+ +IPK+A+GKILR EL+K+++P
Sbjct: 507 RPESKLDEAQVMDFIAKQVAPYKKIRRVSFVTSIPKNASGKILRKELKKISLP 559
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440909|ref|XP_003590732.1| 4-coumarate-coa ligase [Medicago truncatula] gi|355479780|gb|AES60983.1| 4-coumarate-coa ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 319/528 (60%), Positives = 406/528 (76%), Gaps = 4/528 (0%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
D K+GFNS +KTFHSLRPP++LPP A ISA Y SL + + D LI+S T +
Sbjct: 2 DPKTGFNSISKTFHSLRPPLNLPPPHANISAATYTFSLHHS-DFNSDSNTLLIDSTTSHK 60
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+S+S F +R +LA L + L+K+ T+F+LS N +++PILYF+LLS+GV++SP NP++
Sbjct: 61 LSYSTFIQRYKTLAKNL-TLRGLTKHHTSFILSPNLVQVPILYFALLSIGVVVSPTNPIS 119
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAK-LKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
T SEIS + LS PVIAF TS + HKL K L TILIDSPEF+S+T + + +
Sbjct: 120 TPSEISHLVNLSKPVIAFTTSFLSHKLPKQLALGTILIDSPEFESLTTETDVSSTVSPPE 179
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
V QSDVA I+YSSGTTG+ KGVMLTHRNLTA VA+ A +PAV L T+P FH+YG
Sbjct: 180 VSQSDVAVILYSSGTTGKSKGVMLTHRNLTATVAAYNAVRIPTANPAVCLLTVPCFHVYG 239
Query: 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
+ + A+MET V+M+RF+L ML AVE FRVT+ AV PP+VVAMSK G TDGYDLSS
Sbjct: 240 FTYLLKGVAMMETVVMMERFELGKMLGAVERFRVTNVAVAPPVVVAMSKEGVTDGYDLSS 299
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLS 368
L+TVACG APLGKD +AF +KFP ++Q YGLTESTAGV R VGP+E R G+TG+L
Sbjct: 300 LKTVACGGAPLGKDNFVAFMAKFPHASIIQGYGLTESTAGVIRIVGPEEASRGGTTGKLV 359
Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428
+G+EAKIV+P TG+++ PG++GEL +RGP IMKGYVG+P TS TL+ DGW+RTGD+CY
Sbjct: 360 SGMEAKIVNPNTGEAMSPGEQGELWVRGPPIMKGYVGDPVATSVTLV-DGWLRTGDICYF 418
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488
D +GF+++VDRLK+LIKYKGYQVAPAELE LL SH E+ DAAVIPYPDE+AGQ+P+AFV+
Sbjct: 419 DNEGFVYVVDRLKELIKYKGYQVAPAELEQLLQSHPEIKDAAVIPYPDEDAGQIPLAFVI 478
Query: 489 RQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
RQPHSS+ EAEI+ FVA+QV+PYKK+RRV F+N+IPK+A GKILR +L
Sbjct: 479 RQPHSSMGEAEIINFVAKQVAPYKKVRRVVFVNSIPKNATGKILRKDL 526
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 549 | ||||||
| TAIR|locus:2158559 | 562 | AT5G63380 [Arabidopsis thalian | 0.983 | 0.960 | 0.521 | 4e-145 | |
| TAIR|locus:2034392 | 546 | OPCL1 "OPC-8:0 CoA ligase1" [A | 0.952 | 0.957 | 0.468 | 8.5e-120 | |
| TAIR|locus:2034403 | 550 | AT1G20500 [Arabidopsis thalian | 0.952 | 0.950 | 0.450 | 1.2e-115 | |
| TAIR|locus:2176662 | 550 | 4CL8 [Arabidopsis thaliana (ta | 0.959 | 0.958 | 0.430 | 1.3e-109 | |
| TAIR|locus:2115673 | 544 | AT4G05160 [Arabidopsis thalian | 0.941 | 0.950 | 0.416 | 1.1e-103 | |
| TAIR|locus:2117209 | 566 | AT4G19010 [Arabidopsis thalian | 0.956 | 0.927 | 0.409 | 3.3e-102 | |
| TAIR|locus:2017602 | 561 | 4CL1 "4-coumarate:CoA ligase 1 | 0.672 | 0.657 | 0.444 | 7.7e-97 | |
| TAIR|locus:2034423 | 565 | AT1G20480 [Arabidopsis thalian | 0.952 | 0.925 | 0.433 | 9.7e-96 | |
| TAIR|locus:2094771 | 570 | 4CL5 "4-coumarate:CoA ligase 5 | 0.664 | 0.640 | 0.426 | 1.1e-91 | |
| TAIR|locus:2015499 | 542 | ACOS5 "acyl-CoA synthetase 5" | 0.919 | 0.931 | 0.383 | 1.1e-87 |
| TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
Identities = 288/552 (52%), Positives = 391/552 (70%)
Query: 7 QLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLR------ATLPWRDDDTVA 60
+L D SGF+ T +HSLRP + LPP D P+SA ++ SL AT +
Sbjct: 9 RLIDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTY 68
Query: 61 LINSVTGLRVSFSEFTRRTNSLA-SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
L+NS +G +++ E RR SLA S + L+ + AF+LS +S++IP+LY +L+S+G
Sbjct: 69 LVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIG 128
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDS-MTM 176
V++SPANP+ +ESE+S Q+++S PVIAFATS V KL + L T+L+DS EF S +
Sbjct: 129 VVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEFLSWLNR 188
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR-VS-P 234
S +S + +V QSD AAI++SSGTTGRVKGV+LTHRNL A+ A S + + V+
Sbjct: 189 SDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQDPVNYD 248
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
V LF++P FH++G RA +L ET V++ RF+L+ M KAVE+++VT V+PP++VA
Sbjct: 249 RVGLFSLPLFHVFGFMMMIRAISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLIVA 308
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
+ K T YDL SL ++ CG APLGKD F KFP V +VQ YGLTES+ T G
Sbjct: 309 LVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAASTFG 368
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
P+E ++GS GR+S +EAKIVDP TG+SLPPGK GEL +RGP IMKGYVG + ++ T+
Sbjct: 369 PEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKASAETV 428
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474
+GW++TGDLCY D + FL+IVDRLK+LIKYK YQV P ELE +L S+ +V DAAV+P+
Sbjct: 429 DKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQVPPVELEQILHSNPDVIDAAVVPF 488
Query: 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRM 534
PDE+AG++PMAF+VR+P S+LNEA+I++FVA+QV+PYKK+RRVAFINAIPK+ AGKILR
Sbjct: 489 PDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRVAFINAIPKNPAGKILRR 548
Query: 535 ELRKVAVPSGSS 546
EL K+AV +S
Sbjct: 549 ELTKIAVDGNAS 560
|
|
| TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 255/544 (46%), Positives = 353/544 (64%)
Query: 10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
+++SGF ++ TF+S R PI LPP + + ++SS +A +A I++ TG
Sbjct: 5 NSRSGFCNSNSTFYSKRTPIPLPPNPS-LDVTTFISS-QA-----HRGRIAFIDASTGQN 57
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
++F+E R S+A L + + K +LS NSI P++ S++SLG II+ NP+N
Sbjct: 58 LTFTELWRAVESVADCLSEIG-IRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLN 116
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDSM-----TMSWNSKH 182
T +EI++QI+ SNPV+AF TS ++ K+ A K +L+D DS+ + K
Sbjct: 117 TSNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKE 176
Query: 183 EL-DRAK--VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF 239
+R K V Q D A ++YSSGTTG KGV+ +HRNL A V + +
Sbjct: 177 PSGNRVKERVDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQRFIC 236
Query: 240 TMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
T+P FHIYGL F A T +V+ +F++ M+ A+ +++ T + PPI+VAM G
Sbjct: 237 TVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNG 296
Query: 299 GST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
YDLSS+ TV CG APL K+ FA K+P V ++Q YGLTEST T +
Sbjct: 297 ADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTDTVE 356
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
E RR+G+ G+LSA +E +IVDP TG L P + GEL ++GP+IMKGY E TS+TL
Sbjct: 357 ESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSSTLDS 416
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPD 476
+GW+RTGDLCYIDEDGF+F+VDRLK+LIKYKGYQVAPAELE LLL+H E+ DAAVIP+PD
Sbjct: 417 EGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIPFPD 476
Query: 477 EEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
+E GQ PMA+VVR+ SSL+E IMEFVA+QV+PYK+IR+VAF+++IPK+ +GKILR +L
Sbjct: 477 KEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKILRKDL 536
Query: 537 RKVA 540
K+A
Sbjct: 537 IKIA 540
|
|
| TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
Identities = 247/548 (45%), Positives = 350/548 (63%)
Query: 8 LFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG 67
+ D +SGF + TF+S R P+ LPP +S D V++ ++ P R A I++ TG
Sbjct: 9 IVDPRSGFCKSNSTFYSKRQPLSLPPN---LSR-D-VTTFISSQPHRGK--TAFIDAATG 61
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
++FS+ R + +A L + + + D +LS NSI IP++ S++SLG + + AN
Sbjct: 62 QCLTFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANT 121
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT--------MSWN 179
+NT EIS+QI SNP + F T + KL + +L D + +T +S
Sbjct: 122 LNTSGEISKQIADSNPTLVFTTRQLAPKLP-VAISVVLTDDEVYQELTSAIRVVGILSEM 180
Query: 180 SKHELD----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
K E R +V Q D A ++YSSGTTG KGV+ +HRNLTA VA + + KR
Sbjct: 181 VKKEPSGQRVRDRVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKRDD-- 238
Query: 236 VMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
+ + T+P FH YGL F AL T V+++RF L M+ AVE+ R T A+ PP++VA
Sbjct: 239 IFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVA 298
Query: 295 MSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
M YDLSSL+TV CG APL K+ F K+P V ++Q Y LTES G T
Sbjct: 299 MINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGAFT 358
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
+E RR+G+ G L++ +EA+IVDP TG + + GEL ++GP+I KGY E T+
Sbjct: 359 NSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEATNE 418
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
T+ +GW++TGDLCYIDEDGFLF+VDRLK+LIKYKGYQV PAELE LL++H ++ DAAVI
Sbjct: 419 TINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQVPPAELEALLITHPDILDAAVI 478
Query: 473 PYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKIL 532
P+PD+EAGQ PMA+VVR+ S+L+E ++++F+++QV+PYKKIR+V+FIN+IPK+A+GK L
Sbjct: 479 PFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVSFINSIPKTASGKTL 538
Query: 533 RMELRKVA 540
R +L K+A
Sbjct: 539 RKDLIKLA 546
|
|
| TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
Identities = 239/555 (43%), Positives = 343/555 (61%)
Query: 3 KKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI 62
+++ L D ++GF ++ TF+S R P+ LP +++ + ++SS +R A I
Sbjct: 5 QRSSSLIDPRNGFCTSNSTFYSKRKPLALPSKES-LDITTFISSQT----YRGK--TAFI 57
Query: 63 NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVII 122
++ T R+SFS+ + +A L + + + D VLS N+I IPI+ S++SLG ++
Sbjct: 58 DAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVL 117
Query: 123 SPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL------IDSPE----FD 172
+ ANP+NT SEI RQI SNP +AF T + K+A +L + P
Sbjct: 118 TTANPLNTASEILRQIADSNPKLAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVG 177
Query: 173 SMT--MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230
++T M + R +V + D A ++YSSGTTGR KGV +H NL A VA + + P
Sbjct: 178 NLTEMMKKEPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVAR-YIAEPF 236
Query: 231 RVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP 289
+ T+P FH +GL F AL T V++ RFDL M+ AVE++R T + P
Sbjct: 237 EQPQQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVP 296
Query: 290 PIVVAM-SKGGST-DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
P++V M +K YD+S L TV CG APL K+ F K+P V + Q Y LTES
Sbjct: 297 PVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNG 356
Query: 348 GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV-GE 406
+E RR+G+ G LS G+EA+IVDP TG + + GEL ++GP+I KGY E
Sbjct: 357 AGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYFRNE 416
Query: 407 PEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREV 466
E+ ++ +GW++TGDLCYID DGFLFIVDRLK+LIKYKGYQV PAELE LLL+H ++
Sbjct: 417 EEIITS----EGWLKTGDLCYIDNDGFLFIVDRLKELIKYKGYQVPPAELEALLLNHPDI 472
Query: 467 ADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKS 526
DAAVIP+PD+EAGQ PMA+V R+P S+L E ++++F+++QV+PYKKIR+VAFI++IPK+
Sbjct: 473 LDAAVIPFPDKEAGQFPMAYVARKPESNLCEKKVIDFISKQVAPYKKIRKVAFIDSIPKT 532
Query: 527 AAGKILRMELRKVAV 541
+GK LR +L K A+
Sbjct: 533 PSGKTLRKDLIKFAI 547
|
|
| TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
Identities = 226/542 (41%), Positives = 336/542 (61%)
Query: 12 KSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVS 71
KSG+ + SLRP + LP +D S V ++ ++ P + +A+ +S TG ++
Sbjct: 3 KSGYGR-DGIYRSLRPTLVLP-KDPNTSLVSFLFRNSSSYPSK----LAIADSDTGDSLT 56
Query: 72 FSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTE 131
FS+ LA + + KND + + NS + P+ + ++ ++G + + ANP+ T
Sbjct: 57 FSQLKSAVARLAHGFHRLG-IRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTV 115
Query: 132 SEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS-------PEFDSMTMSWNSKHEL 184
+E+S+QI+ SNP I + + + K+ +L+ S P +S +S+++ EL
Sbjct: 116 NEVSKQIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILSFDNVMEL 175
Query: 185 DR-------AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA-VASSFASSPKRVSPAV 236
++ QSD AA++YSSGTTG KGV LTH N AA + + V
Sbjct: 176 SEPVSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGV 235
Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
L +P FH++GL + A+V M RF+L+++LK +E+FRVTH V PP+ +A+
Sbjct: 236 FLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLAL 295
Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355
SK +DLSSL+ + GAAPLGKD + P V+L+Q YG+TE T G+ P
Sbjct: 296 SKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTE-TCGIVSVEDP 354
Query: 356 DECRR-WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
+R GS G L+ G+EA+IV ETG S PP ++GE+ +RGP +MKGY+ P+ T T+
Sbjct: 355 RLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKGYLNNPQATKETI 414
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474
W+ TGDL Y +EDG L++VDR+K+LIKYKG+QVAPAELE LL+SH ++ DA VIP+
Sbjct: 415 DKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQVAPAELEGLLVSHPDILDAVVIPF 474
Query: 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRM 534
PDEEAG++P+AFVVR P+SS+ E +I +F+A+QV+PYK++RRV+FI+ +PKSAAGKILR
Sbjct: 475 PDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRR 534
Query: 535 EL 536
EL
Sbjct: 535 EL 536
|
|
| TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 224/547 (40%), Positives = 338/547 (61%)
Query: 15 FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSE 74
F+S T + S P + LP D + AV + S + DT ALI+S+TG +S +E
Sbjct: 25 FSSKTGIYTSKFPSLHLPV-DPNLDAVSALFSHK-----HHGDT-ALIDSLTGFSISHTE 77
Query: 75 FTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134
S+A+ + +V + + D ++ NS+ P+++ SL+SLG I++ NP ++ EI
Sbjct: 78 LQIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEI 137
Query: 135 SRQIQLSNPVIAFATSSVVHKLAKLKHRTILI-DSPEFDSMTMS----WNSKHE----LD 185
+Q+ + +AF ++ V KL+ L I + +S +FDS+ + ++ E +
Sbjct: 138 KKQVSECSVGLAFTSTENVEKLSSLGVSVISVSESYDFDSIRIENPKFYSIMKESFGFVP 197
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS--SFASSPKRV--SPAVMLFTM 241
+ + Q DVAAIMYSSGTTG KGV+LTHRNL A++ F +S S V L +
Sbjct: 198 KPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNVYLAAL 257
Query: 242 PYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
P HIYGL F +L T VVM+RFD ++ +E F++TH V PP+++A++K
Sbjct: 258 PLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALTKKAK 317
Query: 301 -TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR 359
G SL+ V+ GAAPL + I F P V L+Q YG+TESTA R ++
Sbjct: 318 GVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNSEKLS 377
Query: 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419
R+ S G L+ ++AK+VD +G LPPG GEL I+GP +MKGY+ P+ T +++ D W
Sbjct: 378 RYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQMSIVEDSW 437
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEA 479
+RTGD+ Y DEDG+LFIVDR+K++IKYKG+Q+APA+LE +L+SH + DAAV P+EE
Sbjct: 438 LRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQIAPADLEAVLVSHPLIIDAAVTAAPNEEC 497
Query: 480 GQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 539
G++P+AFVVR+ ++L+E +++ +VA QV+PY+K+R+V +N+IPKS GKILR EL+++
Sbjct: 498 GEIPVAFVVRRQETTLSEEDVISYVASQVAPYRKVRKVVMVNSIPKSPTGKILRKELKRI 557
Query: 540 AVPSGSS 546
S SS
Sbjct: 558 LTNSVSS 564
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| TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 169/380 (44%), Positives = 240/380 (63%)
Query: 171 FDSMTMSWNSKHE-LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF-ASS 228
F +T S E +D ++ DV A+ YSSGTTG KGVMLTH+ L +VA +
Sbjct: 180 FTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 239
Query: 229 PKRV--SPAVMLFTMPYFHIYGLFFCFRAAALMETAV-VMQRFDLKMMLKAVEEFRVTHA 285
P S V+L +P FHIY L + A+ +M +F++ ++L+ ++ +VT A
Sbjct: 240 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVA 299
Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
+ PPIV+A++K T+ YDLSS+ V GAAPLGK+ A +KFP L Q YG+TE+
Sbjct: 300 PMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEA 359
Query: 346 TAGVFRTVG----PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401
+ ++G P + G+ G + E KIVDP+TGDSL + GE+ IRG IMK
Sbjct: 360 GPVLAMSLGFAKEPFPVKS-GACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK 418
Query: 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL 461
GY+ P T+ T+ DGW+ TGD+ ID+D LFIVDRLK+LIKYKG+QVAPAELE LL+
Sbjct: 419 GYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 478
Query: 462 SHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFIN 521
H ++ D AV+ +E AG++P+AFVV+ S L+E ++ +FV++QV YK+I +V F
Sbjct: 479 GHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTE 538
Query: 522 AIPKSAAGKILRMELR-KVA 540
+IPK+ +GKILR +LR K+A
Sbjct: 539 SIPKAPSGKILRKDLRAKLA 558
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| TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 244/563 (43%), Positives = 332/563 (58%)
Query: 1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
+E +T + D KSGF +T F+S R P+ LPP +D V+S A+ P R TV
Sbjct: 14 IESRTLAV-DRKSGFCESTSIFYSKREPMALPPNQF----LD-VTSFIASQPHRGK-TV- 65
Query: 61 LINSVTGLRVSFSEFTRRTNSLAS--YLQNVTR------LSKNDTAFV---LSTNSIEIP 109
+++VTG R+SF E +A Y V + LS N F LS S+
Sbjct: 66 FVDAVTGRRLSFPELWLGVERVAGCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAI 125
Query: 110 ILYFSLLSLGVIISP----ANPV---NTESEISRQIQLSN---PVIAFATSSVVHKLAKL 159
I + ++ IS + PV T +S+ SN PV+ V +
Sbjct: 126 ITTANPINTSDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQ--SY 183
Query: 160 KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA 219
R L+ ++M + S+ + + +V Q D AA++YSSGTTG KGVML+HRNL A
Sbjct: 184 GDRVKLVG--RLETMIETEPSESRV-KQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIA 240
Query: 220 AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVE 278
V + A + T+P HI+G F AL T VV+ +FD+ +L AVE
Sbjct: 241 LVQAYRARFGLEQRT---ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVE 297
Query: 279 EFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336
R ++ ++ PPIVVAM G + YDLSSL TV G APL ++ F +PKV +
Sbjct: 298 THRSSYLSLVPPIVVAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKI 357
Query: 337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396
+Q YGLTESTA +E +R+G++G L+ +E KIVDP+TG L + GEL IR
Sbjct: 358 LQGYGLTESTAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRS 417
Query: 397 PTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAEL 456
PT+MKGY E T++T+ +GW++TGDLCYID DGF+F+VDRLK+LIK GYQVAPAEL
Sbjct: 418 PTVMKGYFKNKEATASTIDSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQVAPAEL 477
Query: 457 EHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRR 516
E LLL+H E+ADAAVIP PD +AGQ PMA++VR+ S+L+E+EIM FVA+QVSPYKKIR+
Sbjct: 478 EALLLAHPEIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRK 537
Query: 517 VAFINAIPKSAAGKILRMELRKV 539
V F+ +IPK+ +GKILR EL K+
Sbjct: 538 VTFLASIPKNPSGKILRRELTKL 560
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| TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 744 (267.0 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 159/373 (42%), Positives = 229/373 (61%)
Query: 171 FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF-ASSP 229
F +T + + EL + K+ D A+ YSSGTTG KGVM+TH+ L ++A +P
Sbjct: 191 FTELTQA--DETELLKPKISPEDTVAMPYSSGTTGLPKGVMITHKGLVTSIAQKVDGENP 248
Query: 230 KRVSPA--VMLFTMPYFHIYGLFFCFRAAALMETAV-VMQRFDLKMMLKAVEEFRVTHAA 286
A V+L +P FHIY L +A A+ ++ RF+L ++++ ++ ++VT
Sbjct: 249 NLNFTANDVILCFLPMFHIYALDALMLSAMRTGAALLIVPRFELNLVMELIQRYKVTVVP 308
Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES- 345
V PP+V+A K T+ YDLSS+ + GAA L K+ A KFP + Q YG+TES
Sbjct: 309 VAPPVVLAFIKSPETERYDLSSVRIMLSGAATLKKELEDAVRLKFPNAIFGQGYGMTESG 368
Query: 346 TAGVFRTVGPDECR-RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV 404
T + + + G+ G + E K+VD ETG SLP K GE+ +RG +MKGY+
Sbjct: 369 TVAKSLAFAKNPFKTKSGACGTVIRNAEMKVVDTETGISLPRNKSGEICVRGHQLMKGYL 428
Query: 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHR 464
+PE T+ T+ DGW+ TGD+ ++D+D +FIVDRLK+LIK+KGYQVAPAELE LL+SH
Sbjct: 429 NDPEATARTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEALLISHP 488
Query: 465 EVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIP 524
+ DAAV+ DE A ++P+AFV R S L E ++ +V +QV YK+I+ V FI IP
Sbjct: 489 SIDDAAVVAMKDEVADEVPVAFVARSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEVIP 548
Query: 525 KSAAGKILRMELR 537
K+ +GKILR +LR
Sbjct: 549 KAVSGKILRKDLR 561
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| TAIR|locus:2015499 ACOS5 "acyl-CoA synthetase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 204/532 (38%), Positives = 304/532 (57%)
Query: 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNS 81
F SL P + +P + ++ ++V L+ + ++ VA + +VTG V++ + R T
Sbjct: 13 FRSLYPSVPIPDK---LTLPEFV--LQGVEEYTEN--VAFVEAVTGKAVTYGDVVRDTKR 65
Query: 82 LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
LA L ++ L K V+ N E I+ ++S G + S ANP SEI +Q++ S
Sbjct: 66 LAKALTSLG-LRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEAS 124
Query: 142 NP--VIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHEL-------DRAKVCQS 192
+I AT+ K+ L I++ + + ++W E D ++ Q+
Sbjct: 125 GARGIITDATN--YEKVKSLGLPVIVLGEEKIEG-AVNWKDLLEAGDKCGDTDNEEILQT 181
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFTMPYFHIYGLF- 250
D+ A+ +SSGTTG KGVMLTHRNL A + S+ F + + V L +P+FHIYG+
Sbjct: 182 DLCALPFSSGTTGLQKGVMLTHRNLIANLCSTLFGVRSEMIGQIVTLGLIPFFHIYGIVG 241
Query: 251 FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL- 309
C V M R+DL++ L A+ V+ A + PPI++ + K D +DLS L
Sbjct: 242 ICCATMKNKGKVVAMSRYDLRIFLNALIAHEVSFAPIVPPIILNLVKNPIVDEFDLSKLK 301
Query: 310 -ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR---RWGSTG 365
++V AAPL + + AF +KFP V + +AYGLTE + P++ + + S G
Sbjct: 302 LQSVMTAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCITLTHGDPEKGQGIAKRNSVG 361
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425
+ LE K +DP+TG SLP GEL +R +M+GY E T T+ GW+ TGD+
Sbjct: 362 FILPNLEVKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDI 421
Query: 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMA 485
YID+DG +FIVDR+K+LIKYKG+QVAPAELE +LL+H V D AV+P PDEEAG++P A
Sbjct: 422 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDVAVVPLPDEEAGEIPAA 481
Query: 486 FVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
VV P ++ E +I+ FVA V+ YKK+R V F+++IPKS +GKI+R LR
Sbjct: 482 CVVINPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLR 533
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54P77 | 4CL1_DICDI | 6, ., 2, ., 1, ., 1, 2 | 0.3423 | 0.9253 | 0.9219 | yes | no |
| Q7F1X5 | 4CLL5_ORYSJ | 6, ., 2, ., 1, ., - | 0.4792 | 0.9307 | 0.9428 | yes | no |
| Q8RU95 | 4CLL6_ORYSJ | 6, ., 2, ., 1, ., - | 0.4899 | 0.9562 | 0.8779 | yes | no |
| Q84P23 | 4CLL9_ARATH | 6, ., 2, ., 1, ., - | 0.5133 | 0.9763 | 0.9537 | yes | no |
| O07610 | LCFB_BACSU | 6, ., 2, ., 1, ., 3 | 0.3191 | 0.8360 | 0.8947 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | ACLL11 | hypothetical protein (548 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | PAL | RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa) | • | 0.683 | |||||||
 | PAL2 | SubName- Full=Phenylalanine ammonia-lyase; (712 aa) | • | 0.681 | |||||||
 | PAL5 | SubName- Full=Phenylalanine ammonia-lyase; (712 aa) | • | 0.681 | |||||||
 | PAL3 | SubName- Full=Phenylalanine ammonia-lyase; (715 aa) | • | 0.679 | |||||||
 | CCR5 | cinnamoyl CoA reductase (EC-1.2.1.44) (230 aa) | • | 0.510 | |||||||
 | f5h | SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa) | • | 0.510 | |||||||
 | CCR1 | cinnamoyl CoA reductase (EC-1.2.1.44) (278 aa) | • | 0.510 | |||||||
 | CCR | SubName- Full=Cinnamoyl CoA reductase; (339 aa) | • | 0.510 | |||||||
 | CHI1 | SubName- Full=Putative uncharacterized protein; (224 aa) | • | 0.510 | |||||||
 | CHS | SubName- Full=Chalcone synthase (Putative uncharacterized protein);; The primary product of thi [...] (397 aa) | • | 0.508 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 549 | |||
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 0.0 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-167 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-158 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-147 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-131 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 1e-125 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-119 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-113 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-113 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-111 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-108 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-103 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 2e-99 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 6e-93 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-86 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 2e-85 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 3e-83 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 7e-83 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 2e-80 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 1e-78 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 9e-78 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 6e-76 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-75 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 9e-73 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 5e-70 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 8e-70 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-69 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 8e-69 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-68 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-68 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 8e-68 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 8e-68 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-67 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 2e-67 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 8e-67 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-66 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-64 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-62 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 3e-62 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 4e-62 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 4e-62 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 6e-62 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 1e-61 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-61 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 9e-60 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 2e-59 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-58 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-58 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-57 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-56 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 3e-56 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 3e-56 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 8e-56 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-55 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-54 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-54 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-53 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-52 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 4e-52 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 4e-51 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 1e-50 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 2e-50 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-50 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 4e-50 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 4e-49 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-48 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 6e-48 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 8e-48 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 9e-47 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 7e-46 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 1e-45 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 3e-45 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 9e-45 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 9e-45 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 2e-44 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 5e-44 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 6e-44 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-43 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 3e-43 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 7e-43 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 1e-42 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 4e-42 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 3e-41 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-40 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 3e-40 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-38 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-38 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 1e-37 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 2e-37 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-37 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 3e-37 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 9e-37 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 2e-36 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 6e-36 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 8e-36 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 2e-35 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 2e-35 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 3e-35 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 1e-34 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-34 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 2e-34 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 3e-34 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 4e-34 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 3e-33 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 5e-33 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 3e-32 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-32 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 6e-32 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 9e-32 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-31 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 1e-30 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 6e-30 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 2e-29 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 4e-29 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 9e-29 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 1e-28 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-27 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 3e-27 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 6e-27 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-26 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 4e-26 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 8e-26 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-25 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-25 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-25 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 1e-24 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 5e-24 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-23 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 4e-23 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 4e-23 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 7e-23 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-22 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 6e-22 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 2e-21 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 2e-21 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 2e-20 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-20 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 4e-20 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 4e-20 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 5e-20 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-19 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 1e-19 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 4e-19 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-18 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-18 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 2e-18 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 6e-18 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 1e-17 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 2e-17 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 3e-17 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 4e-17 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 5e-17 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 3e-15 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 3e-14 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-13 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 2e-13 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 6e-13 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-12 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-12 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 3e-12 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 4e-12 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 4e-12 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 6e-11 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 9e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-09 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-09 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-08 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 1e-08 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 4e-08 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 6e-07 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 6e-07 | |
| COG1541 | 438 | COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme | 7e-07 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 1e-06 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 2e-06 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-06 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 4e-06 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 4e-06 | |
| cd05913 | 424 | cd05913, PaaK, Phenylacetate-CoA ligase (also know | 9e-05 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 3e-04 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 4e-04 | |
| cd05905 | 556 | cd05905, Dip2, Disco-interacting protein 2 (Dip2) | 5e-04 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 0.001 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 0.002 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 0.002 | |
| TIGR02155 | 422 | TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase | 0.002 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 663 bits (1712), Expect = 0.0
Identities = 254/511 (49%), Positives = 333/511 (65%), Gaps = 13/511 (2%)
Query: 32 PPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91
P+D + + + + D ALI++ TG ++++E R LA+ L
Sbjct: 1 IPKDLSLDSASLLFASEFG------DRPALIDAATGRALTYAELERLVRRLAAGLAARG- 53
Query: 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151
K D +LS NS+E P+++ ++LS G +++ ANP+ T +EI++Q++ S +A TS
Sbjct: 54 GRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSE 113
Query: 152 VVHKLAKLK-HRTILIDSPEFDSMTMSWNSKH---ELDRAKVCQSDVAAIMYSSGTTGRV 207
+ KLA L +L+DS + S + E + Q DVAA+ YSSGTTGR
Sbjct: 114 LAEKLASLALEPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRS 173
Query: 208 KGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIYGL-FFCFRAAALMETAVVM 265
KGVMLTHRNL A VA A V L +P FHIYGL L T VVM
Sbjct: 174 KGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVM 233
Query: 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325
RFDL+ L A+E+++VTH V PPIV+A+ K D YDLSSL+ + GAAPLGK+
Sbjct: 234 PRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAE 293
Query: 326 AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP 385
AF ++FP V L Q YG+TES+ P++ + GS GRL +EAKIVDPETG+SLP
Sbjct: 294 AFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLP 353
Query: 386 PGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
P + GEL +RGP +MKGY+ PE T+ T+ DGW+ TGDL Y DEDG+LFIVDRLK+LIK
Sbjct: 354 PNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIK 413
Query: 446 YKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVA 505
YKG+QVAPAELE LLLSH E+ADAAVIPYPDEEAG++PMAFVVRQP S L+E E+M+FVA
Sbjct: 414 YKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSEDEVMQFVA 473
Query: 506 RQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
+QV+PYKK+R+V F++AIPKS +GKILR EL
Sbjct: 474 KQVAPYKKVRKVVFVDAIPKSPSGKILRREL 504
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 482 bits (1243), Expect = e-167
Identities = 200/491 (40%), Positives = 292/491 (59%), Gaps = 22/491 (4%)
Query: 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
ALI++ TG ++F++ ++ LA L+ + L + D ++S NSIE P ++ L+ G
Sbjct: 1 ALIDADTGTELTFADLLKKALRLAKGLRKL-GLKQGDVVALISPNSIEFPPVFLGCLAAG 59
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------AKLKHRTILIDS----- 168
I+S ANP T E++ Q+++S P + F + K+ R I++DS
Sbjct: 60 GIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGV 119
Query: 169 -PEFDSMTMSWNSKHEL--DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
D + ++ E + D AA++YSSGTTG KGVML+H+N+ A ++
Sbjct: 120 LRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQ 179
Query: 226 AS---SPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRV 282
+ +P + V+ F +P++H YGL + T ++M +FD + LK +E+++V
Sbjct: 180 DTLKGNPDSSNDVVLTF-LPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKV 238
Query: 283 THAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
T + PPI VA++K D YDLSSL + GAAPL K+ +FP + Q YG+
Sbjct: 239 TSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGM 298
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
TE+ T DE + GS GRL +EAKIVD + G SL P + GEL ++GP IMKG
Sbjct: 299 TETGPATTLTPPGDE--KPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKG 356
Query: 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLS 462
Y+ PE T T+ DGW+ TGD+ Y DEDG +IVDR K+LIKYKGYQV PAELE +LL
Sbjct: 357 YLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLE 416
Query: 463 HREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR-RVAFIN 521
H +VADAAVI PDE AG++P A+VV +P S L E E+ ++VA++V+ YK++R V F++
Sbjct: 417 HPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKVAKYKQLRGGVVFVD 476
Query: 522 AIPKSAAGKIL 532
IPKS +GKIL
Sbjct: 477 EIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-158
Identities = 235/550 (42%), Positives = 340/550 (61%), Gaps = 27/550 (4%)
Query: 15 FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSE 74
++ T + S PP+ LP D + AV ++ S + DT ALI+S TG +S+SE
Sbjct: 18 YSPETGIYSSKHPPVPLP-SDPNLDAVSFIFSHHN----HNGDT-ALIDSSTGFSISYSE 71
Query: 75 FTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134
S+A+ L +V + + D +L NS+ P+++ ++LSLG I++ NP ++ EI
Sbjct: 72 LQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEI 131
Query: 135 SRQIQLSNPVIAFATSSVVHKLAKLKHRTILI-DSPEFDSMTMSWNSKHELDRAK----- 188
+++ + +AF + V KL+ L I + ++ +FDS + + +EL +
Sbjct: 132 KKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVP 191
Query: 189 ---VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-------ASSFASSPKRVSPAVML 238
+ Q DVAAIMYSSGTTG KGV+LTHRNL A V AS + S V L
Sbjct: 192 KPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPG---SDNVYL 248
Query: 239 FTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
+P FHIYGL F +L T VVM+RFD M+K ++ F+VTH V PPI++A++K
Sbjct: 249 AALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTK 308
Query: 298 GG-STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
G L SL+ V+CGAAPL I F P V +Q YG+TESTA R +
Sbjct: 309 KAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTE 368
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
+ ++ S G L+ ++AK+VD TG LPPG GEL I+GP +MKGY+ P+ T +T+
Sbjct: 369 KLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDK 428
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPD 476
DGW+RTGD+ Y DEDG+L+IVDRLK++IKYKG+Q+APA+LE +L+SH E+ DAAV PD
Sbjct: 429 DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPD 488
Query: 477 EEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
+E G++P+AFVVR+ S+L++ ++ +VA+QV+PYKK+R+V F+ +IPKS AGKILR EL
Sbjct: 489 KECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRREL 548
Query: 537 RKVAVPSGSS 546
++ S SS
Sbjct: 549 KRSLTNSVSS 558
|
Length = 560 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 434 bits (1118), Expect = e-147
Identities = 218/558 (39%), Positives = 303/558 (54%), Gaps = 64/558 (11%)
Query: 16 NSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEF 75
S F S P I +P + DY + D LI+ TG ++++
Sbjct: 4 ASEEFIFRSKLPDIYIPNH---LPLHDYCFERLSEFS----DRPCLIDGATGRVYTYADV 56
Query: 76 TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135
+ +A+ L + + + D +L N E + + G + + ANP T +EI+
Sbjct: 57 ELLSRRVAAGLHKLG-IRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIA 115
Query: 136 RQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPE-----FDSMTMSWNSKHELDR 186
+Q + S + S V KL L + ID P F +T + + EL
Sbjct: 116 KQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADEN--ELPE 173
Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV----------SPAV 236
++ DV A+ YSSGTTG KGVMLTH+ L +VA ++V S V
Sbjct: 174 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA-------QQVDGENPNLYFHSDDV 226
Query: 237 MLFTMPYFHIYGL---FFC-FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV 292
+L +P FHIY L C R A ++M +F++ +L+ ++ +VT A PPIV
Sbjct: 227 ILCVLPMFHIYSLNSVLLCGLRVGA---AILIMPKFEIGALLELIQRHKVTIAPFVPPIV 283
Query: 293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG---- 348
+A++K + YDLSS+ V GAAPLGK+ AF +K P VL Q YG+TE AG
Sbjct: 284 LAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLA 341
Query: 349 --------VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
F + GS G + E KIVDPETG SLP + GE+ IRGP IM
Sbjct: 342 MCLAFAKEPFPV-------KSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIM 394
Query: 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLL 460
KGY+ +PE T+ T+ DGW+ TGD+ YID+D LFIVDRLK+LIKYKG+QVAPAELE LL
Sbjct: 395 KGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALL 454
Query: 461 LSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFI 520
+SH +ADAAV+P DE AG++P+AFVVR S + E EI +FVA+QV YK+I +V F+
Sbjct: 455 ISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFV 514
Query: 521 NAIPKSAAGKILRMELRK 538
++IPK+ +GKILR +LR
Sbjct: 515 DSIPKAPSGKILRKDLRA 532
|
Length = 537 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 392 bits (1009), Expect = e-131
Identities = 174/500 (34%), Positives = 267/500 (53%), Gaps = 20/500 (4%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D ALI G R+++ E RR N LA+ LQ + + D +L NS E I + + L
Sbjct: 26 DRPALIFLGRGGRLTYRELDRRANRLAAALQAL-GVKPGDRVAILLPNSPEFLIAFLAAL 84
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEF 171
G + P NP T E++ + + + ++ L + +L+
Sbjct: 85 RAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDAD 144
Query: 172 DSMTMSWNSKH------ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
D + ++ + + D V D+A ++Y+SGTTG KGV+LTHRNL A A
Sbjct: 145 DRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIA 204
Query: 226 ASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVM---QRFDLKMMLKAVEEFR 281
A+ ++P V+L +P FHI+GL A L +V+ + FD + +L +E+++
Sbjct: 205 AALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYK 264
Query: 282 VTHAAVTPPIVVAMSKGGSTDGYDLSS-LETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340
VT + P + + D DLSS L V G APL + + F +F + +++ Y
Sbjct: 265 VTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGY 324
Query: 341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
GLTE++ V D + GS GR G+E +IVDP+ G+ LP G+ GE+ +RGP +M
Sbjct: 325 GLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVM 383
Query: 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLL 460
KGY PE T+ DGW+RTGDL Y+DEDG+L+IV RLKDLI G + P E+E +L
Sbjct: 384 KGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVL 443
Query: 461 LSHREVADAAVIPYPDEEAGQMPMAFVVRQPH--SSLNEAEIMEFVARQVSPYKKIRRVA 518
H VA+AAV+ PDE G+ +A VV +P + L E+ F+ ++++ YK R V
Sbjct: 444 AEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVV 503
Query: 519 FINAIPKSAAGKILRMELRK 538
F++ +P++A+GKI R LR+
Sbjct: 504 FVDELPRTASGKIDRRALRE 523
|
Length = 534 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 374 bits (964), Expect = e-125
Identities = 176/486 (36%), Positives = 242/486 (49%), Gaps = 36/486 (7%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D AL G +++++E ++ A+YLQ + K D ++ N + PI YF +L
Sbjct: 14 DRPALTF--FGRKLTYAELDELSDRFAAYLQQ-LGVKKGDRVALMLPNCPQFPIAYFGIL 70
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
G ++ P NP+ T E+ Q+ S + S LA
Sbjct: 71 KAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALA------------------- 111
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA- 235
+ ++ D+A + Y+ GTTG KG MLTHRNL A V A
Sbjct: 112 --SGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGED 169
Query: 236 VMLFTMPYFHIYGLFFC----FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI 291
L +P FHI+GL R A T V++ F +LK ++ +R T P +
Sbjct: 170 RFLTALPLFHIFGLTVNMLLGLRLGA---TNVLVPNFRPINVLKEIKRYRFTIFPGVPTL 226
Query: 292 VVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFR 351
A+ YD SSL G APL + F K LV+ YGLTE T+ V
Sbjct: 227 YNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKT-GAPLVEGYGLTE-TSPVTT 284
Query: 352 TVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS 411
D R+ GS G G E KIVD E G+ LPPG+ GEL +RGP +MKGY PE T+
Sbjct: 285 VNPLDGERKPGSIGLPLPGTEVKIVDDE-GNELPPGEVGELVVRGPQVMKGYWNRPEETA 343
Query: 412 ATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAV 471
L DGW+RTGD+ Y+DEDG+ +IVDR KD+I G+ V P E+E +L SH V +AAV
Sbjct: 344 EVL-TDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAV 402
Query: 472 IPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKI 531
+ PD G+ AFVV + +SL E E++ F +++ YK R+V F + +PKSA GKI
Sbjct: 403 VGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCRERLAAYKVPRQVEFRDELPKSAVGKI 462
Query: 532 LRMELR 537
LR ELR
Sbjct: 463 LRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 363 bits (933), Expect = e-119
Identities = 203/532 (38%), Positives = 299/532 (56%), Gaps = 24/532 (4%)
Query: 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNS 81
F S P + P+ + D+V L+ + D VA + +VTG V++ E R T
Sbjct: 15 FRSRYPSV-PVPDKLTLP--DFV--LQDAELYADK--VAFVEAVTGKAVTYGEVVRDTRR 67
Query: 82 LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
A L+++ L K V+ N E I+ +++ G + S ANP ESEI +Q + +
Sbjct: 68 FAKALRSLG-LRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAA 126
Query: 142 NPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWN--------SKHELDRAKVCQSD 193
+ + K+ L I++ E ++W + D ++ Q+D
Sbjct: 127 GAKLIVTNDTNYGKVKGLGLPVIVL-GEEKIEGAVNWKELLEAADRAGDTSDNEEILQTD 185
Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFTMPYFHIYGLF-F 251
+ A+ +SSGTTG KGVMLTHRNL A + SS F+ P+ + V L +P+FHIYG+
Sbjct: 186 LCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGI 245
Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL-- 309
C VVM RF+L+ L A+ V+ A + PPI++ + K + +DLS L
Sbjct: 246 CCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKL 305
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR---RWGSTGR 366
+ + AAPL + + AF +KFP V + +AYGLTE + P++ + S G
Sbjct: 306 QAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGF 365
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLC 426
+ LE K +DP+TG SLP GEL +R +M+GY E T T+ DGW+ TGD+
Sbjct: 366 ILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIG 425
Query: 427 YIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAF 486
YID+DG +FIVDR+K+LIKYKG+QVAPAELE +LL+H V DAAV+P PDEEAG++P A
Sbjct: 426 YIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAAC 485
Query: 487 VVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
VV P + +E +I+ FVA V+ YKK+R V F+++IPKS +GKI+R L++
Sbjct: 486 VVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKE 537
|
Length = 546 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 339 bits (872), Expect = e-113
Identities = 148/348 (42%), Positives = 206/348 (59%), Gaps = 8/348 (2%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
D A I+Y+SGTTGR KGVMLTHRNL A + + V L P +H G F
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVN-ALAGVDLSPGDVYLLAAPLYHAAGGLF 59
Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
A A T V+M +FD + +L +E RVTH + P + + + YDLSSL
Sbjct: 60 LLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRL 119
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC--RRWGSTGRLSA 369
+ GAAP+ + A F V VQ YG+TE+ T+ E R+ GS GR
Sbjct: 120 IIYGAAPMPAELKRAMIEWFG-PVFVQGYGMTETGPTT--TLLSPEDWLRKLGSVGRPVP 176
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
G+E +IVD + G LPPG+ GE+ +RGP +M GY PE T+ L DGW+ TGDL Y+D
Sbjct: 177 GVEVRIVDED-GRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR-DGWLHTGDLGYLD 234
Query: 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVR 489
EDG+L+IVDR KD+I G + PAE+E++LL+H VAD AVI PDEE G+ +A VV
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294
Query: 490 QPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
+P ++L+ E++ F +++ YK + V F++ +P++A+GKIL+ ELR
Sbjct: 295 RPGATLDAEELIAFCRERLAGYKVPKSVEFVDELPRNASGKILKRELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 338 bits (870), Expect = e-113
Identities = 138/347 (39%), Positives = 206/347 (59%), Gaps = 4/347 (1%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
D A I Y+SGTTGR KG MLTHRN+ S A L +P FH++GL
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLNN-GYSIARRLGLTEGDRTLVPVPLFHVFGLVLG 61
Query: 253 FRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
A+ T V+M++FD L+ +E R+T P + +A+ + D +DLSSL T
Sbjct: 62 VLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLRT 121
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW-GSTGRLSAG 370
G AP+ + + +FP + YG+TE++ +T G D G+ GR G
Sbjct: 122 GISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPG 181
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430
+E KIVDP+ G+ +PPG+ GE+ +RG ++MKGY +PE T+ + DGW+ TGDL Y+DE
Sbjct: 182 VEVKIVDPDGGE-VPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDE 240
Query: 431 DGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQ 490
DG+L IV R+KD+I G + PAE+E LL+H VA+AAV+ PDE G++ AFVV +
Sbjct: 241 DGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLK 300
Query: 491 PHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
P ++L E E++ F +++ +K R V F++ +P++A+GKI + +LR
Sbjct: 301 PGATLTEEELIAFCRGRLARFKVPRYVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 341 bits (876), Expect = e-111
Identities = 170/502 (33%), Positives = 255/502 (50%), Gaps = 45/502 (8%)
Query: 66 TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125
G R +++E R N LA+ L+ + + K D V NS E YF++ +G +
Sbjct: 28 DGRRTTYAELDERVNRLANALRALG-VKKGDRVAVFDWNSHEYLEAYFAVPKIGAV---L 83
Query: 126 NPVNT---ESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFDSMTMS 177
+P+N EI+ + + + S V LA + RT++++
Sbjct: 84 HPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGD--GPAAPL 141
Query: 178 WNSKHELDRAKVCQS-----------DVAAIMYSSGTTGRVKGVMLTHRNL---TAAVAS 223
E + S D AA++Y+SGTTG KGV+L+HRNL + AV +
Sbjct: 142 APEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCA 201
Query: 224 SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVT 283
S V L +P FH++ + A V+ +RFD + +L +E RVT
Sbjct: 202 WLKLSRDDVY----LVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVT 257
Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
P I + K D SSL V G A L + F KF + LVQ YG+T
Sbjct: 258 FFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMT 316
Query: 344 ESTAGVFRTVGP------DECRRWGSTGRLSAGLEAKIVDPETGDSLPP-GKE-GELSIR 395
E T+ V +V P + + S GR G+EA+IVD + GD LPP G E GE+ +R
Sbjct: 317 E-TSPVV-SVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDD-GDELPPDGGEVGEIIVR 373
Query: 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAE 455
GP +M+GY PE T A + GW+ TGD+ YIDEDG+L+I DR+KD+I G + P E
Sbjct: 374 GPWLMQGYWNRPEAT-AETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRE 432
Query: 456 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR 515
LE L H VA+ AVI PDE+ G+ P+A VV +P ++L+ E+ F+ +++ +K +
Sbjct: 433 LEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPK 492
Query: 516 RVAFINAIPKSAAGKILRMELR 537
R+AF++ +P+++ GKIL+ LR
Sbjct: 493 RIAFVDELPRTSVGKILKRVLR 514
|
Length = 521 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 330 bits (847), Expect = e-108
Identities = 156/477 (32%), Positives = 236/477 (49%), Gaps = 56/477 (11%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
++++E + LA LQ + K D + NS + I Y+++L G ++ P NP+
Sbjct: 1 VITYAELLELVDRLAGLLQEKG-VRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPM 59
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
N E+E+ + S + S ELD
Sbjct: 60 NREAELEHILNDSGARVLIVGS--------------------------------ELD--- 84
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
DVA I Y+SGTTG KG M THR + A A+S A S V+L +P FH+ G
Sbjct: 85 ----DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDS-VLLAFLPLFHVAG 139
Query: 249 LFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
+ A T V++ R+D + +A+E +RVTH +VV + YDLS
Sbjct: 140 MQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFADYDLS 199
Query: 308 SLETVACGAAPLGKDTIMAFASKFPK---VVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
SL+ V G A L A A + ++ + YGLTE+ P + +
Sbjct: 200 SLKVVGGGGAALPP----AVAERLKALTGLLYEEGYGLTETHTCT--HFNPPDRPKPQCL 253
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP---DGWMR 421
G G +A+++DPETG+ LPPG+EGE+ +RGP + KGY PE T+ + + + R
Sbjct: 254 GIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFR 313
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ 481
TGDL YIDE+G+ F +DR+K +I GY+V PAE+E LL H V + VI PD G+
Sbjct: 314 TGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGE 373
Query: 482 MPMAFVVRQPH--SSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
+ AFVV +P + E +I+E+ +++ YK R + F++ +PK+A+GK+L L
Sbjct: 374 VVKAFVVLKPDYRGKVTEEDIIEWCRERMAAYKYPRIIEFVDELPKTASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 317 bits (815), Expect = e-103
Identities = 128/417 (30%), Positives = 197/417 (47%), Gaps = 21/417 (5%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
++ E R N LA+ L+ + + D +L NS E + ++L G P +P
Sbjct: 1 TYRELDERANRLAAALRAL-GVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLP 59
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLA------KLKHRTILIDSPEFDSMTMSWNSKHEL 184
++ ++ S + ++ KL + I++ +
Sbjct: 60 AERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGA 119
Query: 185 DRAKVCQS----DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
D+A I+Y+SGTTG+ KGVMLTHRNL A A V+L
Sbjct: 120 SAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLL 179
Query: 241 MPYF--HIYGLFFCFRAAALMETAVVMQRFDL--KMMLKAVEEFRVTHAAVTPPIVVAMS 296
+F ++ +F A T V++ +F L +L +E+++VT P ++ +
Sbjct: 180 PLHFDGSVWEIFGPLLAGG---TLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLL 236
Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
K YDLSSL V G PL + + +F V LV YG TE+T + D
Sbjct: 237 KAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGD 296
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
+ GS GR G+E K++D E +PPG+ GEL IRGP + +GY+ +PE+T+ +
Sbjct: 297 PEVKPGSIGRPLPGVEVKVLDEEGEP-VPPGEVGELCIRGPGVARGYLNDPELTAERFVE 355
Query: 417 DGWM--RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAV 471
DGW RTGDL DEDG+L I+ R D +K +G ++ P E+E +LL H VA+AAV
Sbjct: 356 DGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = 2e-99
Identities = 136/342 (39%), Positives = 197/342 (57%), Gaps = 6/342 (1%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
D A I+Y+SGTTG+ KGV+L+HRNL A + + V+L +P FH+ G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGD-VLLSVLPLFHVVGGGSG 59
Query: 253 -FRAAALMETAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310
A T V+ + F L+ +E++RVT P + A++K GYDLSSL
Sbjct: 60 LLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLR 119
Query: 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAG 370
+ G PL + + + P +++ YGLTE T+ V T E ++ G+ GR G
Sbjct: 120 LLISGGEPLSPELL-ERFEERPGAPILEGYGLTE-TSVVTSTNPDSELKKPGTVGRPVPG 177
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430
+E ++VD E LPPG+ GEL +RGP +MKGY P T+A DGW RTGDL Y+DE
Sbjct: 178 VEVRVVDEEGKP-LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDE 236
Query: 431 DGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQ 490
+G+L+I R KDLIK G V PAE+E +LL H VA+AAV+ PDE+ G+ +AFVV +
Sbjct: 237 EGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLR 296
Query: 491 PHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKIL 532
P + E+ + +++PYK R + F++ +PK+A+GKI
Sbjct: 297 PGADALAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 293 bits (752), Expect = 6e-93
Identities = 158/493 (32%), Positives = 250/493 (50%), Gaps = 29/493 (5%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R++++E R A+ L + + K D + + NS I L G ++ P N
Sbjct: 28 DQRLTYAELNARVRRAAAALAALG-IGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLN 86
Query: 127 PVNTESEISRQIQLSNPVIAFATS-------SVVHKLAKLKHRTIL--IDSPEFDSMTMS 177
T E + + + F S +L L+H I + +
Sbjct: 87 TRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKT 146
Query: 178 W----NSKHELDRA-KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV 232
+ + +RA +V DVA I+++SGTTGR KG MLTHR L + A+ +A
Sbjct: 147 FTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSN-AADWAEYLGLT 205
Query: 233 SPAVMLFTMPYFHIYGLFFCFRA---AALME--TAVVMQRFDLKMMLKAVEEFRVTHAAV 287
L P+FH+ F ++A A LM T + + FD + + +E R+T
Sbjct: 206 EGDRYLAANPFFHV----FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPG 261
Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
P + ++ + DLSSL GAA + + F S+ +++ YGL+E+ +
Sbjct: 262 PPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEA-S 320
Query: 348 GVFRTVGPDECRRW--GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVG 405
GV D+ R+ G+ G AG+E KIV+ G+ +P G+ GEL +RGP +MKGY
Sbjct: 321 GVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNEL-GEEVPVGEVGELLVRGPNVMKGYYD 379
Query: 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHRE 465
+PE T+A + DGW+ TGDL +DE+G+L+IVDR KD+ G+ V PAE+E +L H
Sbjct: 380 DPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPA 439
Query: 466 VADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPK 525
VA+AAVI PDE G++ A+VV +P + L E E++ + ++ YK R + F++ +PK
Sbjct: 440 VAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEFLDELPK 499
Query: 526 SAAGKILRMELRK 538
+A GK+L+ LR+
Sbjct: 500 NATGKVLKRALRE 512
|
Length = 513 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 1e-86
Identities = 155/481 (32%), Positives = 225/481 (46%), Gaps = 55/481 (11%)
Query: 69 RVSFSEFTRRTNSLASYL--QNVTRLSKNDT-AFVLSTNSIEIPILYFSLLSLGVIISPA 125
R+++ E + LA+ L V D AF L N E ++Y + +G +I+P
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRP---GDVVAFQL-PNWWEFVVVYLACARIGAVINPI 56
Query: 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELD 185
P+ E E+ ++ + + F R FD M
Sbjct: 57 VPIYRERELGFILRQARARVLFVPDEF---------RG-------FDYAAMP-------- 92
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMP 242
DVA ++Y+SGTTG KGVM TH L A V S +P V M +
Sbjct: 93 ------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVL--MPSPLA 144
Query: 243 YFHI----YGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
HI YGL A T V+ R+D L+ + E VT P + +
Sbjct: 145 --HITGFLYGLELPLLLGA---TVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAA 199
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
G DL SL CG AP+ ++ A V V+AYG+TE T +
Sbjct: 200 ADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKV-VRAYGMTEVPLVTVGTPDDPDD 258
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418
+R + GR G+E +IVD + G+ +PPG+EGEL +RGP + GY+ P+ T A DG
Sbjct: 259 KRAATDGRPVPGVEVRIVDDD-GNDVPPGEEGELQVRGPQLFLGYLDPPDNTEAFT-DDG 316
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEE 478
W RTGDL +D DG+L I R KD+I G ++ E+E LLL H VA+ AV+ PDE
Sbjct: 317 WFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDER 376
Query: 479 AGQMPMAFVVRQPHSSLNEAEIMEFVARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELR 537
G+ A VV P +SL AE+ E +A Q ++ K R+ ++A+P++ +GK+ + ELR
Sbjct: 377 LGERVCAVVVPAPGASLTLAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKVQKFELR 436
Query: 538 K 538
+
Sbjct: 437 E 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 2e-85
Identities = 128/357 (35%), Positives = 192/357 (53%), Gaps = 23/357 (6%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAA---VASSFASSPKRVSPAVMLFTMPYFHIYG 248
D A I+++SGTTGR KGV LTH+NL A+ +A S +P VM P FHI+G
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVM----PLFHIHG 57
Query: 249 LFFCFRAAALMET------AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD 302
L +L+ T V +F + ++RVT + P I + K +
Sbjct: 58 L-----IVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPN 112
Query: 303 GYD-LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361
L + +APL + +F V +++AYG+TE+ + P R+
Sbjct: 113 PGKPPPRLRFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEAAHQIASNPLPPLVRKP 171
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
GS GR AG+E I+D + G LPPG+EGE+ IRGP + GY+ PE DGW R
Sbjct: 172 GSVGR-PAGVEVAILDDD-GRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAF-RDGWFR 228
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ 481
TGDL Y+DEDG+LF+ R+K+LI G +++P E+E +LL H VA+A V PDE G+
Sbjct: 229 TGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGE 288
Query: 482 MPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
A VV + S + E+ +F ++++ +K +++ F++A+PK A GKI R +L +
Sbjct: 289 EVAAAVVLRADSKVTIEELRDFARKRLAAFKVPKKILFVDALPKGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 269 bits (689), Expect = 3e-83
Identities = 157/510 (30%), Positives = 242/510 (47%), Gaps = 54/510 (10%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G +S+ E LA YLQ + K D + NS + I Y+++L ++ P N
Sbjct: 33 GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVN 92
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL-----------------IDSP 169
P+N E E++ + S +A S + K+A L I P
Sbjct: 93 PMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVP 152
Query: 170 EF-----------DSMTMSWN----SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
+ ++W + D+A + Y+SGTTG KG M TH
Sbjct: 153 AWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTH 212
Query: 215 RNLTAAVASS---FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFDL 270
R + A S S+P+ +V+L +P FH+ G+ A T V+M R+D
Sbjct: 213 RTVMANAVGSVLWSNSTPE----SVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDR 268
Query: 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330
+ + +E +RVTH P +VV DLSSL + G A + + A A +
Sbjct: 269 EAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPE----AVAER 324
Query: 331 FPK---VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387
+ + V+ YGLTE+ A P + + G + G++A+++DPET + LPPG
Sbjct: 325 LKELTGLDYVEGYGLTETMA--QTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPG 382
Query: 388 KEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCYIDEDGFLFIVDRLKDLI 444
+ GE+ + GP + KGY PE T+ + DG + RTGDL +DE+G+ FI DRLK +I
Sbjct: 383 EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMI 442
Query: 445 KYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS--SLNEAEIME 502
G++V PAE+E+LL H + +A VI PD G+ A VV +P + E EI+
Sbjct: 443 NASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIA 502
Query: 503 FVARQVSPYKKIRRVAFINAIPKSAAGKIL 532
+ ++ YK R V F++++PKS +GKIL
Sbjct: 503 WAREHMAAYKYPRIVEFVDSLPKSGSGKIL 532
|
Length = 546 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 7e-83
Identities = 134/517 (25%), Positives = 222/517 (42%), Gaps = 42/517 (8%)
Query: 51 LPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107
L D A+I +++ + R LA+ L++ K D + NS E
Sbjct: 19 LEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKD-LGGVKGDRVAIYMPNSPE 77
Query: 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS---------VVHKLAK 158
I + +G I + +P + ++ +I P + A ++
Sbjct: 78 AVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADA 137
Query: 159 LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT 218
+ +++ + + + + D ++Y+SGTTG+ KG++ +H
Sbjct: 138 VLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYL 197
Query: 219 AAVASSFASSPKRV---SPAVMLFTMP-----YFHIYGLFFCFRAAALMETAVVMQR--- 267
+ K P + Y Y +F + A T V+
Sbjct: 198 VEHRLTA----KFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGA---TTVLYDGRPF 250
Query: 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAF 327
+ + + +A+E+++VT +P + + K G + YDLSSL + PL + F
Sbjct: 251 YSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWF 310
Query: 328 ASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387
S V ++ YG TE+ G G + GS+G G + VD E G+ +PPG
Sbjct: 311 YSAL-GVWILDIYGQTETGMGFI--AGRPPVKN-GSSGLPLPGYAVRRVDDE-GNPVPPG 365
Query: 388 KEGELSIRGPT--IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
GEL +R P + Y +PE W RTGD DEDG+ ++ R D+IK
Sbjct: 366 -VGELVVRLPWPGMALTYWNDPERYKEAYF-GRWYRTGDWAERDEDGYFWLHGRSDDVIK 423
Query: 446 YKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE--AEIMEF 503
G ++ P E+E +LL+H VA+AAV+ PD GQ+ +AFVV NE EI
Sbjct: 424 VSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRH 483
Query: 504 VARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
VAR + P+ R++ F++ +PK+A+GKI R LRK+
Sbjct: 484 VARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKIL 520
|
Length = 528 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 2e-80
Identities = 126/356 (35%), Positives = 186/356 (52%), Gaps = 17/356 (4%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG--- 248
D+AAI+Y+SG+TG KGVML+HRNLTA A S A + +L +P+ YG
Sbjct: 2 DDLAAIIYTSGSTGEPKGVMLSHRNLTAG-ARSIAQYLELTEDDRILAVLPFSFDYGLSQ 60
Query: 249 LFFCFRAAALMETAVVMQRFDL-KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
L FR T V+ RF + +LK + + R+T A P + + D
Sbjct: 61 LLTAFRVGG---TLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFP 117
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC-RRWGSTGR 366
SL + L TI+ FP L YGLTE+ + + P+E RR S G+
Sbjct: 118 SLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTY--LPPEELDRRPDSIGK 175
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT-----SATLLPDGWMR 421
+E +VD + G+ PG+ GEL RG +MKGY +PE T L + +
Sbjct: 176 AIPNVELWVVDED-GNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLY 234
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ 481
TGDL +DE+G+L+ V R D+IK +GY+V+P E+E ++ +H VA+AAVI PD GQ
Sbjct: 235 TGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQ 294
Query: 482 MPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
+A VV SL+E E+++ + + Y + F++++PK+A GK+ R LR
Sbjct: 295 AIVAVVVSADGESLDEKELLKHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 1e-78
Identities = 139/476 (29%), Positives = 211/476 (44%), Gaps = 40/476 (8%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R+++ E + LA+ L + + D V N E ILYF+L LG I A P
Sbjct: 40 RLTYRELDAAVDRLAAGLLALG-IGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPA 98
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
+ EI + S A+ + FD ++ EL
Sbjct: 99 HRAHEIGHFARQSEAK-AYIIADRFSG---------------FDYAALARELLEEL---- 138
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIY 247
DVA S GTTG K + TH + + +S + + P V L +P H +
Sbjct: 139 ---PDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEAC--GLDPGTVYLAVLPAAHNF 193
Query: 248 -----GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD 302
GL A T V+ + +E +VTH A+ P ++ + D
Sbjct: 194 TLSSPGLLGALLAGG---TVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWD 250
Query: 303 GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWG 362
DLSSL + G APL + + L Q +G+ E R P +
Sbjct: 251 QADLSSLRVIQVGGAPLSPELARRVEERL-GCPLQQVFGMAEGLVNYTRLDDPPDVIM-R 308
Query: 363 STGR-LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
+ GR +S E +IVD + +PPG+ GEL RGP ++GY PE + DG+ R
Sbjct: 309 TQGRPISPADEIRIVDDQGEP-VPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYR 367
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ 481
TGDL ID DG+ +V R+KD I G +++P E+E+LLLSH VADAAV+ PDE G+
Sbjct: 368 TGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGE 427
Query: 482 MPMAFVVRQPHSSLNEAEIMEF-VARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
AFVV + ++ AE+ F + ++ +K R+ ++++P + GK+ + L
Sbjct: 428 RICAFVVPRGGAAPTLAELRAFLREQGLAKFKLPDRLEVVDSLPLTPVGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 250 bits (642), Expect = 9e-78
Identities = 137/474 (28%), Positives = 205/474 (43%), Gaps = 60/474 (12%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R +++E R N LA+ L + + D ++ N E +F+L LG + P N
Sbjct: 3 RYTYAELAERVNRLAAGLLALG-VRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTA 61
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
E++ + S +
Sbjct: 62 LRGEELAHILDHSGARLIVV---------------------------------------- 81
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
D AAI+Y+SGTTG KGV+LTH L A + R V+L +P FHI
Sbjct: 82 ----DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLR-PDDVLLTPLPLFHINA 136
Query: 249 LFFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
+ AAL+ T V++ RF V + T + + + K D
Sbjct: 137 QAYSV-YAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMK--QPPSPDD 193
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR 366
APL AF +F V LV+ YG+TE+ + P + GS GR
Sbjct: 194 RDHPLRFVFGAPLPAAIWPAFEERF-GVKLVEGYGMTETGVPII---APGDPAPPGSCGR 249
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIR---GPTIMKGYVGEPEVTSATLLPDGWMRTG 423
G+E +IVD + G +PPG+ GEL +R + KGY G PE T+ +GW TG
Sbjct: 250 PRPGVEVRIVDED-GREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTG 307
Query: 424 DLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMP 483
D DEDGFL+ VDR KD I+ +G ++ E+E +L+H VA+AAV+ P E
Sbjct: 308 DRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEV 367
Query: 484 MAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
A VV +P +L+ ++EF ++ + R + F++ +PK+ KI + ELR
Sbjct: 368 KAVVVLRPGETLDPEALLEFCRDRLPYFMVPRYIEFVDELPKTPTEKIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 6e-76
Identities = 138/473 (29%), Positives = 227/473 (47%), Gaps = 69/473 (14%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
++F E +R + LA L + + + D +L+ NSIE +L+ +LL LG ++ P NP
Sbjct: 1 SLTFQELDQRVSQLAEQLAALG-VRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPR 59
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
+ E+ +Q L +
Sbjct: 60 LPQEELQQQ----------------------------------------------LADLQ 73
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVM-LFTMPYFHIY 247
A I+++SG+TG+ K V+ T N A+ S + ++P L ++P FH+
Sbjct: 74 PDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG--LTPDDNWLLSLPLFHVS 131
Query: 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
GL R+ V+ +FD + + +A+E VTH ++ P + + + S LS
Sbjct: 132 GLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLE--SLGARWLS 189
Query: 308 SLETVACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR-WGSTG 365
SL V G AP+ + A P L YG+TE+ + V T+ PD+ GS G
Sbjct: 190 SLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVA-TLKPDDFLAKLGSVG 245
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425
+ G E +IV+P+ G E+ +RGP++ GY+ + +T DGW TGDL
Sbjct: 246 KPLPGRELRIVNPQDG---------EILVRGPSLFLGYLPQGGLTPPLD-EDGWFHTGDL 295
Query: 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMA 485
Y+D +G+L+++ R DLI G + P E+E +LL H V +AAV+ PD+E GQ P+A
Sbjct: 296 GYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVA 355
Query: 486 FVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
FVV ++ E+ F+A +++ YK+ +R + +P++A+GKI R LR+
Sbjct: 356 FVVPN-DDPVSVEELQAFLADKLAKYKRPKRWYPLPELPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 1e-75
Identities = 138/492 (28%), Positives = 220/492 (44%), Gaps = 77/492 (15%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D +AL++ G +++ E R+ LA L + L D VL+ S E +LY ++
Sbjct: 1 DRIALVDG--GRSLTYGELDARSGRLAKALLALGLL-PGDRVAVLAPKSAEYVVLYLAIW 57
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
G + P NP +E++ + S P +
Sbjct: 58 RAGGVAVPLNPSYPAAELAYILSDSQPSLLV----------------------------- 88
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-----SFASSPKR 231
D A I+Y+SGTTGR KGV+LTH NL A + + +S
Sbjct: 89 ----------------DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASD-- 130
Query: 232 VSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPP 290
V+L +P H++GLF +V RFD + R+T P
Sbjct: 131 ----VLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPT 186
Query: 291 IVVAMSKGGSTDGYDLSSLETVAC--------GAAPLGKDTIMAFASKFPKVVLVQAYGL 342
I + + Y+ A G+A L + + + +L + YG+
Sbjct: 187 IYTRL-----LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGHTLL-ERYGM 240
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
TE G+ + D RR G+ G G+E +IVD + G+ L G+ GE+ +RGP +
Sbjct: 241 TE--TGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSE 298
Query: 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL-IKYKGYQVAPAELEHLLL 461
Y +PE T+ DGW +TGD+ +DEDG+ I+ R D IK GY+V+ E+E LL
Sbjct: 299 YWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALL 358
Query: 462 SHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFIN 521
H VA+ AVI PD + G+ +A VV + ++L AE+ + +++PYK +RV ++
Sbjct: 359 EHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREKLAPYKIPKRVIVVD 418
Query: 522 AIPKSAAGKILR 533
+P++A GK+ +
Sbjct: 419 ELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 9e-73
Identities = 163/510 (31%), Positives = 254/510 (49%), Gaps = 47/510 (9%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G ++FS F + A+YLQ + + K D ++ N + I Y+ L G I+ N
Sbjct: 47 GKDITFSVFHDKVKRFANYLQKLG-VEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105
Query: 127 PVNTESEISRQIQLSNPVI------AFATSSVVHKLAKLKH------------------- 161
P+ TE E+ Q+ S + F + V K++H
Sbjct: 106 PLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYP 165
Query: 162 -----RTILIDSPEFDSMTMSWNS-KHELDRA--KVC--QSDVAAIMYSSGTTGRVKGVM 211
++ L+ WNS + E++ C ++D+A + Y+ GTTG KGVM
Sbjct: 166 FVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVM 225
Query: 212 LTHRNLTAAVASSFASSPKRVS-PAVMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFD 269
LTH+NL + V+L +P+FH+YG+ + + V++ +FD
Sbjct: 226 LTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFD 285
Query: 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFAS 329
+KM+ +A+++ +VT P I +A+ YD+SS+ G+APL +
Sbjct: 286 MKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEV----QE 341
Query: 330 KFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP 386
KF V LV+ YGLTES+ V + E R GS G EA I+ ETG++LPP
Sbjct: 342 KFETVTGGKLVEGYGLTESSP-VTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPP 400
Query: 387 GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKY 446
G+ GE+ ++GP IMKGY +PE T+A +L DGW+ TGD+ Y+DEDGF ++ DR KD+I
Sbjct: 401 GEIGEIVVKGPQIMKGYWNKPEETAA-VLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVA 459
Query: 447 KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR 506
G+ V P E+E +L H +V + I PD G+ AFVV + + +E E+ +F +
Sbjct: 460 SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARK 519
Query: 507 QVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
++ YK + F + +PK+ GKILR L
Sbjct: 520 YLAAYKVPKVYEFRDELPKTTVGKILRRVL 549
|
Length = 563 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 5e-70
Identities = 133/488 (27%), Positives = 242/488 (49%), Gaps = 15/488 (3%)
Query: 53 WRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112
+ D +A+I + ++ + + +A+YL + K + +LS NS+E +L
Sbjct: 13 YLHPDRIAIITEEEEM--TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLL 70
Query: 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFD 172
F++ + I P N TE+E+ Q++ S + F + + ++ + +
Sbjct: 71 FAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYV--QRVIS 128
Query: 173 SMTMSWNSKHELDRA-KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT-AAVASSFASSPK 230
++ ++D + +S I Y+SGTTG+ KG +LT N+ A+ ++FA
Sbjct: 129 ITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLT 188
Query: 231 RVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP 289
+++L +P FHI G+ F F +V ++F+ L +E+ +VT P
Sbjct: 189 MHDRSIVL--LPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVP 246
Query: 290 PIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAG 348
I A+ + +L S+ G AP ++ + F + F Q +G+TE++
Sbjct: 247 TIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFL---FGQGFGMTETSPT 303
Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
VF D R+ GS G+ + +++D + G+ GEL IRGP +MK Y P+
Sbjct: 304 VFMLSEEDARRKVGSIGKPVLFCDYELIDENKNK-VEVGEVGELLIRGPNVMKEYWNRPD 362
Query: 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468
T T+ DGW+ TGDL +DEDGF++IV R K++I G + P E+E ++ +V +
Sbjct: 363 ATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYE 421
Query: 469 AAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAA 528
AV+ + G++P+AF+V++ S L E +++E ++ YK + + F+ +PK+A
Sbjct: 422 VAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNAT 481
Query: 529 GKILRMEL 536
GKI + +L
Sbjct: 482 GKIQKAQL 489
|
Length = 496 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 8e-70
Identities = 146/482 (30%), Positives = 239/482 (49%), Gaps = 44/482 (9%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
V+F E S+A L + + K D +L N +E+ ++ +L LG + N
Sbjct: 28 VTFMELHEAVVSVAGKLAALG-VKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRL 86
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTI--LIDSPEFDSMTMSWNSKHELDRA 187
+ E+ Q+ + KL L++ P+ + + +LD
Sbjct: 87 SREELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEE---AEIQEEFDLD-- 141
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAV---------ML 238
+VA IMY+SGTTG+ KGV+ T+ N + S+ V A+ L
Sbjct: 142 -----EVATIMYTSGTTGKPKGVIQTYGN-------HWWSA---VGSALNLGLTEDDCWL 186
Query: 239 FTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
+P FHI GL R+ V++++FD + + K ++ VT +V ++ + +
Sbjct: 187 AAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLER 246
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAGVFRTVGPDE 357
Y SS + G P K + K P + Q+YG+TE TA T+ P++
Sbjct: 247 LGEGTYP-SSFRCMLLGGGPAPKPLLEQCKEKGIP---VYQSYGMTE-TASQIVTLSPED 301
Query: 358 CR-RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
+ GS G+ E KI G +PP +EGE+ ++GP + KGY+ + T T
Sbjct: 302 ALTKLGSAGKPLFPCELKIEK--DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQ- 358
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPD 476
DGW +TGD+ Y+DE+GFL+++DR DLI G + PAE+E +LLSH VA+A V+ PD
Sbjct: 359 DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPD 418
Query: 477 EEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
++ GQ+P+AFVV+ + E E+ F +++ YK +R F+ +P++A+GK+LR EL
Sbjct: 419 DKWGQVPVAFVVK--SGEVTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHEL 476
Query: 537 RK 538
++
Sbjct: 477 KQ 478
|
Length = 483 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 1e-69
Identities = 152/511 (29%), Positives = 254/511 (49%), Gaps = 59/511 (11%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRL--SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R ++++F RR LA+ L+ L D L+ N+ LYF++ +G ++ N
Sbjct: 25 RYTYADFYRRVRRLANALE---SLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLN 81
Query: 127 PVNTESEISRQIQLSN-----------PVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT 175
P + +I+ I + P++ ++ +L +K + D+ ++
Sbjct: 82 PRLSPEQIAYIINHAEDKVIFVDDDFLPLLE----AIAPRLPTVKAVVVYDDADMPETSL 137
Query: 176 MSWNSKHELDRA--------KVCQSDVAAIMYSSGTTGRVKGVMLTHRN-----LTAAVA 222
+ + EL ++ ++ A + Y+SGTTG KGV+ +HR+ L +A+
Sbjct: 138 PNVYAYEELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALP 197
Query: 223 SSFASSPKRVSPAVMLFTMPYFHI--YGLFFCFRAAALMETAVVM--QRFDLKMMLKAVE 278
S S V+ P FH+ +GL + AA ++ +V+ + D +L +E
Sbjct: 198 DSLGLSESDT---VLPVV-PMFHVNAWGLPY---AATMVGAKLVLPGRYLDPASLLDLIE 250
Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
E +VT +A P I + + +G DLSSL V G + L + I + +V+
Sbjct: 251 EEKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVEVI--H 308
Query: 339 AYGLTE----STAGVFRT--VGPDECRRWG---STGRLSAGLEAKIVDPETGDSLPP-GK 388
A+G+TE T + V E + GR G+E +IVD E + LP GK
Sbjct: 309 AWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNE-LPWDGK 367
Query: 389 -EGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYK 447
GEL +RGP + Y +PE + L DGW RTGD+ IDEDG++ I DR KD+IK
Sbjct: 368 TVGELVVRGPWVTGSYYKDPE-KTEELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIKSG 426
Query: 448 GYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQ 507
G ++ ELE+ L++H VA+AAV+ P E+ G+ P+A VV +P + + E E++E +A++
Sbjct: 427 GEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVLKPGAKVTEEELLEHLAKK 486
Query: 508 VSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
V+ + RV F++ IPK++ GK + LR+
Sbjct: 487 VAKWWLPDRVVFVDEIPKTSVGKFDKKALRE 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 8e-69
Identities = 149/471 (31%), Positives = 228/471 (48%), Gaps = 48/471 (10%)
Query: 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFA---TSSVVHKLAK-LKHRTI--- 164
++++L LG ++ NP+ T E+ + +A + V +L + TI
Sbjct: 99 FYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSV 158
Query: 165 -LIDS-------------PEFDSM----------TMSWNS---------KHELDRAKVCQ 191
+I + P T+ W + ++ +
Sbjct: 159 NMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTP 218
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLFTMPYFHIYGLF 250
DVA I+Y+SGTTG+ KG LTHRNL A A A P P +L +P FH YGL
Sbjct: 219 DDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLT 278
Query: 251 FCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
C A + V++ D+ ++L A+++ T PP+ +++ G DLS +
Sbjct: 279 LCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGV 338
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPDECRRWGSTGRLS 368
GA L T+ K +LV+ YGLTE S V + D RR G G
Sbjct: 339 RNAFSGAMALPVSTV-ELWEKLTGGLLVEGYGLTETSPIIVGNPMSDD--RRPGYVGVPF 395
Query: 369 AGLEAKIVDPETGD-SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCY 427
E +IVDPE D ++P G+EGEL +RGP + KGY PE T+ + L DGW RTGD+
Sbjct: 396 PDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVV 454
Query: 428 IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFV 487
++EDGF+ IVDR+K+LI G+ V PAE+E +L H V DAAV+ P E+ + +A V
Sbjct: 455 MEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAV 514
Query: 488 VRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
V +P ++L+ + + ++ YK RR ++ +P+ GK+ R E+R+
Sbjct: 515 VLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVRE 565
|
Length = 573 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 2e-68
Identities = 146/503 (29%), Positives = 236/503 (46%), Gaps = 28/503 (5%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL+ +++E N +A+ L + L K D L NS +L+
Sbjct: 23 RYPDKTALVFG--DRSWTYAELDAAVNRVAAALLD-LGLKKGDRVAALGHNSDAYALLWL 79
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS----VVHKLAKLKH-RTILIDS 168
+ G + P N + T E++ + S + LA L IL
Sbjct: 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLV 139
Query: 169 PEFDSMTMSWNSKHEL--------DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
W + ++ D+A I+Y+SGT KG MLTHR L A
Sbjct: 140 LGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAE 199
Query: 221 VASSFASSPKRVSPA-VMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVE 278
S + +S + L +P +H L F + T V++ D +++L+ +E
Sbjct: 200 YVSCIVAG--DMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIE 257
Query: 279 EFRVTHAAVTPPIV-VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
R+T + PP V +++ + D DLSSL GA+ + + + + P +
Sbjct: 258 AERIT-SFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFY 316
Query: 338 QAYGLTESTAGVFRTV-GPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395
YG TE TV GP+E RR GS GR +E ++VD + G+ + PG+ GE+ R
Sbjct: 317 NCYGQTE--IAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHR 373
Query: 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAE 455
P +M GY +PE T+ GW +GDL +DE+G++ +VDR KD+IK G VA E
Sbjct: 374 SPQLMLGYWDDPEKTAEAFR-GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASRE 432
Query: 456 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR 515
+E L +H VA+ AVI PD + + A VV + +++ E E++ +++ +K +
Sbjct: 433 VEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPK 492
Query: 516 RVAFINAIPKSAAGKILRMELRK 538
RV F++ +P++ +GKIL+ ELR+
Sbjct: 493 RVIFVDELPRNPSGKILKRELRE 515
|
Length = 523 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 2e-68
Identities = 149/519 (28%), Positives = 246/519 (47%), Gaps = 55/519 (10%)
Query: 64 SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123
S G +++ E + + + A++LQ T L D V N ++ P+ F + G+I+
Sbjct: 44 SNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103
Query: 124 PANPVNTESEISRQIQ---------LSN---------------------------PVIAF 147
NP+ T E+ Q L+N P+
Sbjct: 104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRL 163
Query: 148 ATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
++VV + K+ L + +F+ ++ + + A DVA + Y+ GTTG
Sbjct: 164 LINAVVKHVKKMVPAYHLPQAVKFNDA-LAKGAGQPVTEANPQADDVAVLQYTGGTTGVA 222
Query: 208 KGVMLTHRNLTAAVASSFASSPKRVSPA--VMLFTMPYFHIYGLFFCFRAAALMETA--- 262
KG MLTHRNL A + A ++ +++ +P +HIY F F A+M
Sbjct: 223 KGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYA--FTFHCMAMMLIGNHN 280
Query: 263 -VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321
++ DL M+K + +++ + + VA+ + D S+L+ G L
Sbjct: 281 ILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL 340
Query: 322 DTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP 378
T A ++ +V + + YG+TE++ V +V P + + G+ G K++D
Sbjct: 341 AT----AERWKEVTGCAICEGYGMTETSPVV--SVNPSQAIQVGTIGIPVPSTLCKVIDD 394
Query: 379 ETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVD 438
+ G+ LP G+ GEL ++GP +MKGY PE T L DGW++TGD+ I EDG++ IVD
Sbjct: 395 D-GNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVD 453
Query: 439 RLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEA 498
R KD+I G+ V P ELE +L + V A I PDE++G+ FVV +P +L +
Sbjct: 454 RKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKE 513
Query: 499 EIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
++ME + ++ YK + V F + +P + GKILR ELR
Sbjct: 514 QVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELR 552
|
Length = 562 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 8e-68
Identities = 130/481 (27%), Positives = 214/481 (44%), Gaps = 63/481 (13%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+F+E ++ A++L+++ + + D VL E+ + + LG + P
Sbjct: 1 WTFAELKEESDRAANFLKDLG-VGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTT-- 57
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
+ ++L + R I+
Sbjct: 58 ----------------QLGPKDIRYRLERAGARAIVTS---------------------- 79
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM--PYFHIY 247
D A + ++SGTTG K V+ TH + + + + P + +T+ P +
Sbjct: 80 -ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVT--GAYWLDLRPDDLHWTIADPGW-AK 135
Query: 248 GLFFCFRAAALMETAVV---MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
G + A L+ AV +RFD + L+ +E + VT P + + + Y
Sbjct: 136 GAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDLS-SY 194
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
D S L V PL + I + + + + YG TE+ V P + GS
Sbjct: 195 DFSHLRHVVSAGEPLNPEVIDWWRAAT-GLPIRDGYGQTETGLLV--ANFPGMEVKPGSM 251
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSI----RGPTIMKGYVGEPEVTSATLLPDGWM 420
GR + G I+D E G+ LPPG+EG++++ R P + +GY+ +PE T AT+ W
Sbjct: 252 GRPAPGYRVAIIDDE-GNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIR-GDWY 309
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480
TGD DEDG+ + V R D+IK GY++ P E+E L+ H VA+AAV+ PD G
Sbjct: 310 LTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRG 369
Query: 481 QMPMAFVVRQPHSSLNEA---EIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
++ AFVV P +E E+ E V ++ +PYK R + F+ +PK+ +GKI R+ELR
Sbjct: 370 EVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSGKIRRVELR 429
Query: 538 K 538
Sbjct: 430 A 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 8e-68
Identities = 143/499 (28%), Positives = 238/499 (47%), Gaps = 38/499 (7%)
Query: 66 TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125
G ++S + LA++L + AF L E I+Y + L +G + P
Sbjct: 46 HGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWC-EFTIIYLACLKVGAVSVPL 104
Query: 126 NPVNTESEISRQIQLSNPVIAFATS------------SVVHKLAKLKHRTILID--SPEF 171
P E+E+ + + FA + + ++L +L+ + +D +P
Sbjct: 105 LPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQ-IVGVDKLAPAT 163
Query: 172 DSMTMSWNSKHELDRAKVCQS-------DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS 224
S+++S + + + ++AA++++SGT G KGVMLTH N+ A+ +
Sbjct: 164 SSLSLS----QIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS-ERA 218
Query: 225 FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVT 283
+ + V + P H G A L+ +V++ F L +E+ R T
Sbjct: 219 YCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCT 278
Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
P + + DLS+L CG + K +A + + L+ YG T
Sbjct: 279 CMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKK--VARECQQRGIKLLSVYGST 336
Query: 344 ESTAGVFRTVGPDECRRW--GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401
ES+ V D+ + G +AG+E K+VD E +LPPG EGE + RGP +
Sbjct: 337 ESSPHAV--VNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFM 393
Query: 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL 461
GY+ EPE+T+ L +GW +GDLC +DE G++ I R KD+I G ++ E+E +LL
Sbjct: 394 GYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILL 453
Query: 462 SHREVADAAVIPYPDEEAGQMPMAFVV-RQPHSSLNEAEIMEFVARQ-VSPYKKIRRVAF 519
H ++ DA V+ PDE G+ A+VV + PH SL E++ F +R+ V+ YK +
Sbjct: 454 QHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVV 513
Query: 520 INAIPKSAAGKILRMELRK 538
I+ +P++A+GKI + LRK
Sbjct: 514 IDKLPRTASGKIQKFLLRK 532
|
Length = 547 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 1e-67
Identities = 126/361 (34%), Positives = 185/361 (51%), Gaps = 19/361 (5%)
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPY 243
A D+A + Y+ GTTG+ KGVM THR++ A P L P
Sbjct: 162 VAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPR---FLMCTPL 218
Query: 244 FHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
H G FF L+ T +V+ +FD +L+A+EE R+T + P ++ A+
Sbjct: 219 SHAGGAFF---LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL 275
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKF-PKVVLVQAYGLTE--STAGVFRTV--GPD 356
DLSSLETV GA+P+ + +F P + Q YG TE R PD
Sbjct: 276 RTRDLSSLETVYYGASPMSPVRLAEAIERFGP--IFAQYYGQTEAPMVITYLRKRDHDPD 333
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
+ +R S GR + GL ++D + G + G+ GE+ +RGP +M GY PE T+
Sbjct: 334 DPKRLTSCGRPTPGLRVALLDED-GREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-R 391
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPD 476
DGW+ TGD+ DEDGF +IVDR KD+I G+ V P E+E +L H VA AVI PD
Sbjct: 392 DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPD 451
Query: 477 EEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
E+ G+ A VV +P ++++ AE+ V + ++V F++++P +A GK + L
Sbjct: 452 EKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKAL 511
Query: 537 R 537
R
Sbjct: 512 R 512
|
Length = 524 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 2e-67
Identities = 120/369 (32%), Positives = 176/369 (47%), Gaps = 29/369 (7%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF 250
D+AA ++ GTTG K +HRN A + S V+L +P FH+ G
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPG-DVLLNGLPLFHVGGAI 59
Query: 251 ----FCFRAAA--LMETAV------VMQRFDLKMMLKAVEEFRVTH-AAVTPPIVVAMSK 297
A ++ T V+ F K VE +RVT +AV P V+A
Sbjct: 60 VTGLAPLARGATVVLPTPSGFRNPAVVANF-----WKIVERYRVTLLSAV--PTVLAALL 112
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
D+SSL GAAPL + F + V +V+ YG+TE T GV
Sbjct: 113 QVPLGDADISSLRYALTGAAPLPVEVARRFEAV-TGVPVVEGYGMTEGT-GVSAINPRGG 170
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLP----PGKEGELSIRGPTIMKGYVGEPEVTSAT 413
RR GS G ++ + G +L PG+ G L+IRGP + GY+ +
Sbjct: 171 PRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-NDAHNAGA 229
Query: 414 LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473
L DGW+ TGDL ID DG+L++ R KDLI G+ + P +E LL H VA AA +
Sbjct: 230 RLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVG 289
Query: 474 YPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKI-RRVAFINAIPKSAAGKIL 532
PD AG++P+A+V +P +++ E E++ FV ++ + + + I+A+P +A GKI
Sbjct: 290 RPDAYAGELPVAYVQLKPGATVTEGELLAFVKARIPERAAVPKAIYIIDALPLTAVGKIF 349
Query: 533 RMELRKVAV 541
+ LR A
Sbjct: 350 KPRLRCDAA 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 8e-67
Identities = 151/509 (29%), Positives = 224/509 (44%), Gaps = 52/509 (10%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R ++ E R LAS L + + K D VL+ N+ + +F + G ++
Sbjct: 27 DRRYTYRETYDRCRRLASALSKLG-IGKGDVVAVLAPNTPAMLEAHFGVPMAGAVL---V 82
Query: 127 PVNT---ESEISRQIQLSNPVIAFA----TSSVVHKLAKLKHRTILIDSPEFDSMTMSW- 178
P+NT +I+ + S + F S LA L + I+ S
Sbjct: 83 PLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDS 142
Query: 179 -----------NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN--LTAAVASSF 225
L + D ++ Y+SGTTG KGV+ THR L A
Sbjct: 143 EEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIE 202
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
P R V L+T+P FH G F + A+ T V +++ D + +E+ +VTH
Sbjct: 203 WGMPDR---PVYLWTLPMFHCNGWCFPWAITAVGGTHVCLRKVDAPAIYDLIEKHKVTHL 259
Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
P ++ ++ D L V AP I +V YGLTE
Sbjct: 260 CGAPTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEELGFEVT--HVYGLTE- 316
Query: 346 TAGVFRTV---------GPDECR-----RWGSTGRLSAGLEAKIVDPETGDSLPP-GKE- 389
T G TV P E R R G R E +VDPET +P GK
Sbjct: 317 TYGPI-TVCEWKPEWDALPAEERARLKARQGV--RYVGLEEVDVVDPETMKDVPRDGKTI 373
Query: 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGY 449
GE+ +RG T+MKGY PE T GW +GDL + DG++ I DR KD+I G
Sbjct: 374 GEIVMRGNTVMKGYYKNPEAT-EEAFAGGWFHSGDLAVVHPDGYIEIKDRSKDIIISGGE 432
Query: 450 QVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVS 509
++ E+E +L H V +AAV+ PDE+ G+ P AFVV +P +S+ E E++E+ +++
Sbjct: 433 NISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEEELIEYCREKLA 492
Query: 510 PYKKIRRVAFINAIPKSAAGKILRMELRK 538
+K + V F+ +PK+A GKI + LR+
Sbjct: 493 HFKVPKTVEFV-ELPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 1e-66
Identities = 120/487 (24%), Positives = 197/487 (40%), Gaps = 92/487 (18%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
++++E R LA+ L + + D +L+ N E I ++L+ G + P P
Sbjct: 5 TITWAELAERVRRLAAGLIALG-VKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
++ E++ + S + F D P+
Sbjct: 64 SSPEEVAYILNDSGARVVFVE-----------------DKPD------------------ 88
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
D+A ++Y+SGTTG KGVMLTHRNL A A+ P V+ F +P H++
Sbjct: 89 ----DLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSF-LPLAHVFE 143
Query: 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP--------PIVVAMSKGGS 300
L A V + +L+ + E R T P I ++ G
Sbjct: 144 QRLGE-YLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGP 202
Query: 301 TDG--YD----LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
+ L G APL + + F + + +++ YGLTE++ TV
Sbjct: 203 LKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFRAL--GIPILEGYGLTETSGVA--TVN 258
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
R G+ G+ G+E +I + +GE+ +RGP +MKGY PE T+ L
Sbjct: 259 RPGDIRIGTVGKPLPGVEVRIAE-----------DGEILVRGPNVMKGYYKNPEATAEAL 307
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAVI- 472
DGW+ TGD+ +DEDGFL I DR KDLI G +AP +E+ L + ++ A V+
Sbjct: 308 DEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG 367
Query: 473 ---PY------PDEEA--------GQMPMAFVVRQPHSSLNEA--EIMEFVARQVSPYKK 513
PY D EA G + + + +E +++ ++
Sbjct: 368 DDRPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEANARLARVEQ 427
Query: 514 IRRVAFI 520
I++ +
Sbjct: 428 IKKFVLL 434
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 1e-64
Identities = 160/547 (29%), Positives = 254/547 (46%), Gaps = 83/547 (15%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILY 112
R D AL+ GLR ++ EF ++LA L + + K D + + N E +
Sbjct: 28 RYPDREALVYRDQGLRWTYREFNEEVDALAKGL--LALGIEKGDRVGIWAPNVPEWVLTQ 85
Query: 113 FSLLSLGVIISPANPVNTESEIS---RQIQLSNPVIA--FATSSVV-------------- 153
F+ +G I+ NP SE+ Q + A F S V
Sbjct: 86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCE 145
Query: 154 ------HKLAKLKHRTILIDSPEFDSMTMSWN---------SKHELDR--AKVCQSDVAA 196
+L +L+ R I + + M ++++ EL A + D
Sbjct: 146 PGQLQSARLPELR-RVIFLGDEKHPGM-LNFDELLALGRAVDDAELAARQATLDPDDPIN 203
Query: 197 IMYSSGTTGRVKGVMLTHRNLT---AAVASSFASSPK-RVSPAVMLFTMPYFHIYGLFF- 251
I Y+SGTTG KG LTHRN+ + + + + R+ V P +H +G+
Sbjct: 204 IQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPV-----PLYHCFGMVLG 258
Query: 252 ---CFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
C A T V + FD L AVEE R T P + +A +DLS
Sbjct: 259 NLACVTHGA---TMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLS 315
Query: 308 SLETVACGAAPLGKDTIMAFASKFP-----KVV-------LVQAYGLTESTAGVFRT-VG 354
SL T G IMA S P +V+ + AYG+TE++ +T
Sbjct: 316 SLRT--------G---IMA-GSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTD 363
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
+R + GR LE KIVDPETG+++P G++GEL RG ++MKGY +PE T+ +
Sbjct: 364 DPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAI 423
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474
DGWM TGDL +DE+G++ IV R+KD+I G + P E+E L +H ++ D V+
Sbjct: 424 DADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGV 483
Query: 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRM 534
PDE+ G+ A+++ +P ++L E ++ +F +++ YK R + F++ P + GKI +
Sbjct: 484 PDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKF 543
Query: 535 ELRKVAV 541
++R++ +
Sbjct: 544 KMREMMI 550
|
Length = 559 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 1e-62
Identities = 136/487 (27%), Positives = 212/487 (43%), Gaps = 70/487 (14%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+F + +N LA+ L+ + + + D V S E I + ++ LG + P + +
Sbjct: 6 EYTFGQLKDASNRLANALRELG-VERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVL 64
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
F +V H+L R ++ D +
Sbjct: 65 ------------------FGPDAVEHRLRDSGARVLVTDGSD------------------ 88
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFH 245
D A ++Y+SGTTG KG + HR L V F +P+ V +
Sbjct: 89 ----DPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRP--GDVFWTPADWAW 142
Query: 246 IYGLFFCFRAAALMETAVV---MQRFDLKMMLKAVEEFRVTHAAVTPPIV-VAMSKGGST 301
I GL A VV MQRFD + + + VT+A + P + + G
Sbjct: 143 IGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSER 202
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361
YDL L VA G LG+ ++ +A + + + YG TE+ VG C
Sbjct: 203 ARYDLR-LRAVASGGESLGE-ELLEWARDELGLTVNEFYGQTEANL----VVG--NCAAL 254
Query: 362 -----GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR--GPTIMKGYVGEPEVTSATL 414
GS G+ G E +VD G +PPG+ GE++++ P + GY PE T+A
Sbjct: 255 GPARPGSMGKPVPGHEVAVVDDA-GRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF 313
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474
W+ TGDL D DG+L+ R D+IK GY++ PAE+E LL H V +AAV+
Sbjct: 314 A-GDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGV 372
Query: 475 PDEEAGQMPMAFVVRQPHSSLNEA---EIMEFVARQVSPYKKIRRVAFINAIPKSAAGKI 531
PD E G++ AFVV ++ E+ E V +++ ++ R + F++ +P + GKI
Sbjct: 373 PDPERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPMTTTGKI 432
Query: 532 LRMELRK 538
R ELR+
Sbjct: 433 RRRELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 3e-62
Identities = 159/530 (30%), Positives = 245/530 (46%), Gaps = 64/530 (12%)
Query: 64 SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123
S G+ +S++E R + + A+YLQ T L D V N ++ PI F L G+I+
Sbjct: 44 SNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV 103
Query: 124 PANPVNTESEISRQIQ--------------------LSNPVIAFA--------------- 148
NP+ T E+ Q + L + I +
Sbjct: 104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGW 163
Query: 149 -TSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
++VV K+ K+ L + F + L V D+A + Y+ GTTG
Sbjct: 164 LVNTVVDKVKKMVPAYHLPQAVPFKQA-LRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLA 222
Query: 208 KGVMLTHRNLTA---AVASSFASSPKRVSP------AVMLFTMPYFHIYGLFFCFRAAAL 258
KG MLTH NL A V + + P VM+ +P +HIY F +
Sbjct: 223 KGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYA--FTANCMCM 280
Query: 259 META----VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC 314
M + ++ D+ +K + ++R + + VA+ D S+L+
Sbjct: 281 MVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNS 340
Query: 315 GAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL 371
G L K T A ++ ++ +V+ YGLTE T+ V T E R G+ G G
Sbjct: 341 GGTALVKAT----AERWEQLTGCTIVEGYGLTE-TSPVASTNPYGELARLGTVGIPVPGT 395
Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED 431
K++D + G+ LP G+ GEL I+GP +MKGY +PE T+ L +GW +TGD+ ID D
Sbjct: 396 ALKVIDDD-GNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPD 454
Query: 432 GFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV-RQ 490
GF+ IVDR KDLI G+ V P E+E ++++H +VA+ A I PDE +G+ FVV R
Sbjct: 455 GFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARD 514
Query: 491 PHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
P L+ E+ + + YK + + +++P + GKILR ELR +A
Sbjct: 515 P--GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA 562
|
Length = 562 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 212 bits (540), Expect = 4e-62
Identities = 149/513 (29%), Positives = 243/513 (47%), Gaps = 44/513 (8%)
Query: 46 SLRATLPW---RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLS 102
+L A++ + R D AL+ +S++EF +R A L + + D +L
Sbjct: 3 NLSASIAFHARRTPDRAALV--YRDQEISYAEFHQRILQAAGMLH-ARGIGQGDVVALLM 59
Query: 103 TNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------ 156
NS L F+ LG + P N +L+ +A+ KL
Sbjct: 60 KNSAAFLELAFAASYLGAVFLPIN-----------YRLAADEVAYILGDAGAKLLLVDEE 108
Query: 157 ----AKLKHRTILIDSP-EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVM 211
L+ I+ID+ + DS ++ +A V +D+ +MY+SGTT R KGVM
Sbjct: 109 FDAIVALETPKIVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVM 168
Query: 212 LTHRNLT-----AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME--TAVV 264
++ NL +A +S + +L P +H+ G F A L T +
Sbjct: 169 HSYGNLHWKSIDHVIALGLTASER------LLVVGPLYHV-GAFDLPGIAVLWVGGTLRI 221
Query: 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324
+ FD + +L A+E R+T A + P ++ + D +DL SL G + I
Sbjct: 222 HREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRI 281
Query: 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
F F + + AYGLTE+ +G E + GSTGR A +E +I D G L
Sbjct: 282 RDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWL 340
Query: 385 PPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLI 444
PP +GE+ +RGP + KGY +PE T+ W R+GD+ Y+DE+GFL++ DR KD+I
Sbjct: 341 PPNMKGEICMRGPKVTKGYWKDPEKTAEAFY-GDWFRSGDVGYLDEEGFLYLTDRKKDMI 399
Query: 445 KYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV 504
G +A +E+E ++ EVA+AAVI D+ G+ A VV P ++L +
Sbjct: 400 ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHC 459
Query: 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
++++ +K R++ + +P++ +GK+L+ LR
Sbjct: 460 RQRLASFKVPRQLKVRDELPRNPSGKVLKRVLR 492
|
Length = 497 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 4e-62
Identities = 154/551 (27%), Positives = 259/551 (47%), Gaps = 58/551 (10%)
Query: 32 PPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91
P + P++ +Y+ + P A+I G ++++E ++ A+ L+
Sbjct: 29 PHGERPLT--EYLRAWARERP----QRPAII--FYGHVITYAELDELSDRFAALLRQRG- 79
Query: 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNP--VIAF-A 148
+ D V N + I++F +L LG + P +P+ E E+S ++ + ++A
Sbjct: 80 VGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQ 139
Query: 149 TSSVVHK-LAKLKHRTILIDS--------------PEFDSMTMSWNSKHELDRAKVCQS- 192
+ VV + A+ R +++ S + ++ +L A +
Sbjct: 140 LAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTA 199
Query: 193 ----------DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
+AA+ Y+ GTTG KG T R++ A+++A + +V L +P
Sbjct: 200 PVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLP 259
Query: 243 YFHIYG-----LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
F I G LF F A T V++ R+D + AVE +RVT + V +
Sbjct: 260 EFWIAGENFGLLFPLFSGA----TLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMD 315
Query: 298 GGSTDGYDLSSLETVACGA--APLGKDTIMAFASKFPKVVLVQAYGLTES------TAGV 349
YDLSSL V + L D + + V+ A+G+TE+ TAG
Sbjct: 316 HPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAG- 374
Query: 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEV 409
F+ D + G G E KI D ETG+ LP G EGE+ +R P+++KGY +PE
Sbjct: 375 FQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEA 434
Query: 410 TSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA 469
T+ L DGW+ TGD+ IDE GFL + R K+++K G V P+E+E LL H V +
Sbjct: 435 TAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGS 493
Query: 470 AVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAG 529
AV+ PD + GQ+P+AFV +P + L A + + ++ Y K+ + ++A+P +A G
Sbjct: 494 AVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVY-KVPEIRIVDALPMTATG 552
Query: 530 KILRMELRKVA 540
K+ + +L+ +A
Sbjct: 553 KVRKQDLQALA 563
|
Length = 567 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 214 bits (546), Expect = 6e-62
Identities = 124/530 (23%), Positives = 203/530 (38%), Gaps = 101/530 (19%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+++ E R +LAS L + + D + + N E I ++L+LG + P +
Sbjct: 46 ITYRELYERVRALASGLLS-LGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTS 104
Query: 130 TESEISRQIQLSNPVIAFA-TSSVVHKLAKLKHRTILI-----------DSPEFDSMTMS 177
T +++ + S + F ++ + + + ++ E ++ +
Sbjct: 105 TPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLE 164
Query: 178 WNSK-----HELDRAKVCQS-------DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
+D A + D+A I+Y+SGTTG KGVMLTHRNL A VA
Sbjct: 165 VFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGID 224
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
P +L +P HI+ F AL V+ + D + +L+ ++E R T
Sbjct: 225 EVLPPIGPGDRVLSFLPLAHIFERAFEG-GLALYGGVTVLFKEDPRTLLEDLKEVRPTVM 283
Query: 286 AVTPPI------------------------------VVAMSKGGSTDGYDL--------- 306
P + +S+ G
Sbjct: 284 IGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLV 343
Query: 307 ---------SSLETVACGAAPLGKDTIMAFASKFPKVVLV---QAYGLTESTAGVFRTVG 354
+ G APL + + F S + + + YGLTE++A V +V
Sbjct: 344 FRKIRDALGGRIRYALSGGAPLSPELLHFFRS-----LGIPILEGYGLTETSAVV--SVN 396
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
P + G+ G+ G+E KI D +GE+ +RGP +MKGY PE T+
Sbjct: 397 PPDRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAF 445
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAVIP 473
DGW RTGDL +DEDG+L I R K+LIK G +AP +E L + V+
Sbjct: 446 TEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVV- 504
Query: 474 YPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAI 523
+ + +A +V +L + S + R + I
Sbjct: 505 ---GDDKKFLVALIVPDFD-ALEKWAESLNKVISASREELARDPKLLKLI 550
|
Length = 613 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 1e-61
Identities = 156/528 (29%), Positives = 250/528 (47%), Gaps = 62/528 (11%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D A IN G ++F + R+ + A+YLQN L K D ++ N ++ PI F +L
Sbjct: 38 DQPAFIN--MGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGIL 95
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KH--------- 161
G+I+ NP+ T E+ Q+ S S+ H L K+ KH
Sbjct: 96 RAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQ 155
Query: 162 -----RTIL-------------IDSPEFDSM--TMSWNSKHELDRAKVCQSDVAAIMYSS 201
T++ P+ S + + + + ++ D+A + Y+
Sbjct: 156 LSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTG 215
Query: 202 GTTGRVKGVMLTHRNLTAAV--ASSFASSPKRVSPAVMLFTMPYFHIYG------LFFCF 253
GTTG KG MLTHRN+ A + A + +++ +P +HI+ LF
Sbjct: 216 GTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIEL 275
Query: 254 RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVA 313
L+ T D+ +K ++++ T + A+ D SSL+
Sbjct: 276 GGQNLLIT----NPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSV 331
Query: 314 CGAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRW-GSTGRLSA 369
G + + A A ++ K+ L++ YGLTE + V +V P + + GS G
Sbjct: 332 GGGMAVQQ----AVAERWVKLTGQYLLEGYGLTECSPLV--SVNPYDLDYYSGSIGLPVP 385
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
E K+VD + G+ +PPG+ GEL ++GP +M GY PE T ++ DGW+ TGD+ +D
Sbjct: 386 STEIKLVDDD-GNEVPPGEPGELWVKGPQVMLGYWQRPEAT-DEVIKDGWLATGDIAVMD 443
Query: 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVR 489
E+GFL IVDR KD+I G+ V P E+E +++ H +V + A + P E +G+ FVV+
Sbjct: 444 EEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVK 503
Query: 490 QPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
+ SL E E++ R ++ YK + V F + +PKS GKILR ELR
Sbjct: 504 K-DPSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELR 550
|
Length = 560 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 2e-61
Identities = 150/542 (27%), Positives = 237/542 (43%), Gaps = 74/542 (13%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL+ LR ++ + + LA L + + D + + N E + F
Sbjct: 30 RFPDREALVVRHQALRYTWRQLADAVDRLARGLLALG-VQPGDRVGIWAPNCAEWLLTQF 88
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP--VI---AFATSSVVHKL------------ 156
+ +G I+ NP SE+ + S VI AF TS L
Sbjct: 89 ATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQP 148
Query: 157 -----AKLKH--RTILIDSPEFDSMTMSWN---------SKHELD--RAKVCQSDVAAIM 198
+L + + +W+ S+ L +A + + D I
Sbjct: 149 GALACERLPELRGVVSLAPAPPPGFL-AWHELQARGETVSREALAERQASLDRDDPINIQ 207
Query: 199 YSSGTTGRVKGVMLTHRNLT-----AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF 253
Y+SGTTG KG L+H N+ A + + P +P +H +G+
Sbjct: 208 YTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVP------VPLYHCFGMVLAN 261
Query: 254 RAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
+ +V + FD L+AVEE R T P + +A +DLSSL T
Sbjct: 262 LGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRT 321
Query: 312 VACGAAPLGKDTIMAFASKFPKVV-----------LVQAYGLTESTAGVFRTVGPDEC-R 359
IMA A +V+ + AYG+TE++ +T D+ R
Sbjct: 322 -----------GIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLER 370
Query: 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419
R + GR LE K+VDP+ G ++P G+ GEL RG ++MKGY PE T+ ++ DGW
Sbjct: 371 RVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGW 429
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEA 479
M TGDL +DE G++ IV R KD+I G + P E+E L +H VAD V PDE+
Sbjct: 430 MHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKY 489
Query: 480 GQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 539
G+ +A+V P + +E E+ EF +++ +K R F++ P + GK+ + +R++
Sbjct: 490 GEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREI 549
Query: 540 AV 541
++
Sbjct: 550 SI 551
|
Length = 558 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 9e-60
Identities = 121/374 (32%), Positives = 167/374 (44%), Gaps = 41/374 (10%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYG 248
DVAA ++ GTTG K TH N A A P + +P FH+
Sbjct: 213 DDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDT----VFCGLPLFHVNA 268
Query: 249 LFFCFRAAALMETAVV------------MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMS 296
L A VV + F K VE +R+ P V A
Sbjct: 269 LLVTGLAPLARGAHVVLATPQGYRGPGVIANF-----WKIVERYRIN-FLSGVPTVYAAL 322
Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
DG+D+SSL CGAAPL + F + V +V+ YGLTE+T PD
Sbjct: 323 LQVPVDGHDISSLRYALCGAAPLPVEVFRRFEAA-TGVRIVEGYGLTEATCVSSVNP-PD 380
Query: 357 ECRRWGSTGRLSAGLEAKIV--DPETGDS--LPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
RR GS G ++V D + G L I GP + GY+ E
Sbjct: 381 GERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKG 439
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
L DGW+ TGDL ID DG+ ++ R KDLI G+ + PA +E LL H VA AA +
Sbjct: 440 LWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAV 499
Query: 473 PYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVS-----PYKKIRRVAFINAIPKSA 527
PD AG++P+A+V +P +S EAE++ F ++ P + V ++A+PK+A
Sbjct: 500 GRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVP----KHVRILDALPKTA 555
Query: 528 AGKILRMELRKVAV 541
GKI + LR+ A+
Sbjct: 556 VGKIFKPALRRDAI 569
|
Length = 632 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 2e-59
Identities = 149/509 (29%), Positives = 239/509 (46%), Gaps = 50/509 (9%)
Query: 60 ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
A+I + +G V++ E R+N LA L+ + L + D +L N+ E +Y++ G
Sbjct: 2 AVIMAPSGEVVTYGELEARSNRLAHGLRALG-LREGDVVAILLENNPEFFEVYWAARRSG 60
Query: 120 VIISPANPVNTESEISRQIQLSNP---VIAFATSSVVHKLAK-----LKHRTILI-DSPE 170
+ +P N T +EI+ + S +++ A + +LA + ++ P
Sbjct: 61 LYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPG 120
Query: 171 FDSMTMSWNSKHELDRAKVCQSDV--------AAIMYSSGTTGRVKGVM--LTHRNLTAA 220
F S + A Q D A ++YSSGTTGR KG+ L + A
Sbjct: 121 FRS----------YEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEA 170
Query: 221 ---VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277
+ + +V L P +H L F A AL T VVM++FD + L +
Sbjct: 171 PGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALI 230
Query: 278 EEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKF-PKV 334
E +RVTH+ + P + V M K YD+SSL AAP + A + P
Sbjct: 231 ERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGP-- 288
Query: 335 VLVQAYGLTESTAGVFRTVGPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELS 393
++ + Y +E G + ++ GS G+ G E +I+D E G+ LPPG+ G +
Sbjct: 289 IIHEYYASSE--GGGVTVITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELPPGEIGTVY 344
Query: 394 IRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAP 453
Y +PE T+A P GW+ GD+ Y+DEDG+L++ DR D+I G + P
Sbjct: 345 FEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYP 404
Query: 454 AELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH-----SSLNEAEIMEFVARQV 508
E+E+LL++H +VAD AV PDEE G+ A V QP AE++ ++ ++
Sbjct: 405 QEIENLLVTHPKVADVAVFGVPDEEMGERVKAVV--QPADGADAGDALAAELIAWLRGRL 462
Query: 509 SPYKKIRRVAFINAIPKSAAGKILRMELR 537
+ YK R + F + +P++ GK+ + LR
Sbjct: 463 AHYKCPRSIDFEDELPRTPTGKLYKRRLR 491
|
Length = 502 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 1e-58
Identities = 119/348 (34%), Positives = 193/348 (55%), Gaps = 8/348 (2%)
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR 254
A IMY+SGTTGR KG +LTH NLT + ++ ++ V +P FHI G+
Sbjct: 177 ALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLP 236
Query: 255 AAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
L V+ + FD +L +E +VT + P A+ DL+ L +
Sbjct: 237 GLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLA-LRVL 295
Query: 313 ACGAAPLGKDTIM-AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL 371
+ GAAP DT++ A+ FP+ ++ A+G TE + +G D R+ GS G++ +
Sbjct: 296 SWGAAP-ASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTV 354
Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED 431
A++VD D +P G+ GE+ R PT+M GY PE T A GW +GDL DE+
Sbjct: 355 AARVVDENMND-VPVGEVGEIVYRAPTLMSGYWNNPEAT-AEAFAGGWFHSGDLVRQDEE 412
Query: 432 GFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFV-VRQ 490
G++++VDR KD+I G + AE+E++L SH ++ + AVI DE+ G++P+A VR
Sbjct: 413 GYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRN 472
Query: 491 PHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
++L ++ EF+ +++ YK + + ++A+P++ AGK+L+ ELR+
Sbjct: 473 DDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRE 520
|
Length = 542 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 2e-58
Identities = 131/472 (27%), Positives = 222/472 (47%), Gaps = 42/472 (8%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
++ + LA L+ + ++ NSIE+ +L + L LG I+ N T
Sbjct: 1 TWQDLDCEAAHLAKALK-AQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLT 59
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190
E+E + Q++ + + S L+ + DS D + + + L A
Sbjct: 60 ENERTNQLEDLDVQLLLTDS-------LLEEKDFQADS--LDRIEAAGRYETSLS-ASFN 109
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRN-LTAAVAS--SFASSPKRVSPAVMLFTMPYFHIY 247
+A +M++SGTTG+ K V T RN +AV S + + L ++P +HI
Sbjct: 110 MDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTED----DNWLLSLPLYHIS 165
Query: 248 GLFFCFRAAALMETAVVMQRF-DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
GL FR T ++ +F L M+ RVTH ++ P + + G +
Sbjct: 166 GLSILFRWLIEGATLRIVDKFNQLLEMIA---NERVTHISLVPTQLNRLLDEGGHN---- 218
Query: 307 SSLETVACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365
+L + G + + I A P + +YG+TE T T P+ G
Sbjct: 219 ENLRKILLGGSAIPAPLIEEAQQYGLP---IYLSYGMTE-TCSQVTTATPEMLHARPDVG 274
Query: 366 RLSAGLEAKI-VDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424
R AG E KI VD + G GE+ ++G +MKGY+ + E+T A GW TGD
Sbjct: 275 RPLAGREIKIKVDNKEG-------HGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGD 326
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484
+ +D +GFL+++ R DLI G + P E+E +L H + +A V+P PD E GQ+P+
Sbjct: 327 IGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPV 386
Query: 485 AFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
A++V S +++A+++ ++ +++ YK ++ +P +A+GKILR +L
Sbjct: 387 AYIVS--ESDISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 2e-57
Identities = 132/480 (27%), Positives = 207/480 (43%), Gaps = 60/480 (12%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
+++ E N A+ L+ +S D +L +S E+ + + L G + N
Sbjct: 8 EQSLTYRELHDLANRFANVLRA-LGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALN 66
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
P+ T ++ + S +L+ +
Sbjct: 67 PLLTPQDLEHILDDSGA-------------------ALLVTEAD---------------- 91
Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP-YFH 245
D+A +Y+SGTTG+ KGVM HR+ A +FA + P +F+ F
Sbjct: 92 ------DIAYWLYTSGTTGKPKGVMHRHRDPLTF-AEAFARELLGLQPGDRIFSSSKLFF 144
Query: 246 IYGL----FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
YGL F + A +AV++ + +L + R T P + A+ + G+
Sbjct: 145 AYGLGNSLLFPLFSGA---SAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGA 201
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
S+ L +A +L G TE +F + P R
Sbjct: 202 GSAPLFRSVRLCVSAGEALPAGLAERWAEATGIEIL-DGIGSTE-VLHIFISNRPGAARP 259
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420
G+TGR G EA++VD G +P G G+L +RGP++ GY PE T TL DGW+
Sbjct: 260 -GTTGRPVPGYEARLVDES-GREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWL 316
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480
RTGD D DG+ R D+IK G V+P E+E L H VA+AAV+ PDE+
Sbjct: 317 RTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGL 376
Query: 481 QMPMAFVVRQP---HSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
AFVV +P L E ++ F+ +++PYK R++ F++ +P++A GK+ R LR
Sbjct: 377 VRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 1e-56
Identities = 134/473 (28%), Positives = 216/473 (45%), Gaps = 65/473 (13%)
Query: 104 NSIEIPILYFSLLSLGVIISPANPVNTESE---ISRQIQLSNPVIAFATSSVVHKLAK-- 158
N E +F L +G I+ P N E I + Q S V + + ++ +
Sbjct: 71 NCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED 130
Query: 159 ---LKHRTIL-IDSPEFDSMTMSWNSKHELDRAKVCQS------DVAAIMYSSGTTGRVK 208
L+H + + P D S+ A +C + D A I+++SGTT R K
Sbjct: 131 ATPLRHICLTRVALPADDG-VSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPK 189
Query: 209 GVMLTHRNLT-AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM------ET 261
GV++TH NL A S++ + + V L MP FHI + A M T
Sbjct: 190 GVVITHYNLRFAGYYSAWQCALR--DDDVYLTVMPAFHID-----CQCTAAMAAFSAGAT 242
Query: 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV-VAMSKGGSTDGYD-----------LSSL 309
V+++++ + V ++R T P ++ M + S + LS
Sbjct: 243 FVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQ 302
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG--PDECRRWGSTGRL 367
E KD AF +F V L+ +YG+TE+ G+ +G P + RRW S GR
Sbjct: 303 E----------KD---AFEERF-GVRLLTSYGMTETIVGI---IGDRPGDKRRWPSIGRP 345
Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRG---PTIMKGYVGEPEVTSATLLPDGWMRTGD 424
EA+I D + LP G+ GE+ I+G TI K Y +P+ T+ L DGW+ TGD
Sbjct: 346 GFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGD 404
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484
Y+DE+GF + VDR ++IK G V+ ELE+++ +H ++ D V+ D +
Sbjct: 405 TGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIK 464
Query: 485 AFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
AFVV +L+E E F + ++ +K + +P++ +GKI++ L+
Sbjct: 465 AFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
|
Length = 517 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 3e-56
Identities = 129/485 (26%), Positives = 227/485 (46%), Gaps = 18/485 (3%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
+A ++ G R +++E LA+ L+ + VL+ NS+ + L+F+
Sbjct: 10 QRLAAVDLALGRRWTYAELDALVGRLAAVLRR-RGCVDGERLAVLARNSVWLVALHFACA 68
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
+G I P N + SE+ +Q + P + ++ A RT + D +
Sbjct: 69 RVGAIYVPLNWRLSASELDALLQDAEPRL------LLGDDAVAAGRTDVED---LAAFIA 119
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAV 236
S ++ D + V+ I+++SGT+G+ KGVML+ RNL A +F + + +
Sbjct: 120 SADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQT-AHNFGVLGRVDAHSS 178
Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAV-VMQRFDLKMMLK--AVEEFRVTHAAVTPPIVV 293
L P FHI GL R + ++ V F+ K L +TH P +
Sbjct: 179 FLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQ 238
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
A D L L + G AP + I+ + + +V +G++E+ +V
Sbjct: 239 AFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSV 296
Query: 354 GPDECR-RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
D R + G+ G + ++ ++VD + G+ P G GEL +RGP + GY P+ T+
Sbjct: 297 DCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATAR 355
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
DGW RTGD+ D DGF ++VDR KD+ G V PAE+E +L H + + AV+
Sbjct: 356 AFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVV 415
Query: 473 PYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKIL 532
D + G++ +V + L+ I ++ +++ YK + + ++A+P++A+GK+
Sbjct: 416 GMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQ 475
Query: 533 RMELR 537
+ LR
Sbjct: 476 KARLR 480
|
Length = 488 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 3e-56
Identities = 149/496 (30%), Positives = 225/496 (45%), Gaps = 39/496 (7%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
++ E R ++LA+ L R + K D V S N ++ F+ LG + P N
Sbjct: 32 SWTWREIDARVDALAAALA--ARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNF 89
Query: 128 VNTESEISRQIQLSNPVI-----AFAT-SSVVHKLAKLKHRTILIDSPEF----DSMTMS 177
T E++ + S F ++ V + + I +++
Sbjct: 90 RQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVAR 149
Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS-SPKRVSPAV 236
+ + A V D ++SGTTGR K +LTH + + + A P
Sbjct: 150 -HLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDA 208
Query: 237 MLFTMPYFH---IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
L P H I+ L R AA + +RFD + VE RVT+ P I+
Sbjct: 209 SLVVAPLSHGAGIHQLCQVARGAATVLLPS--ERFDPAEVWALVERHRVTNLFTVPTILK 266
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGK-DTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
+ + + D YD SSL V AP+ + D A A VLVQ +GL E T + T
Sbjct: 267 MLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGK--VLVQYFGLGEVTGNI--T 322
Query: 353 V----------GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
V GPD R G+ G G+E +I D E G LPPG+ GE+ + GP + G
Sbjct: 323 VLPPALHDAEDGPDA--RIGTCGFERTGMEVQIQDDE-GRELPPGETGEICVIGPAVFAG 379
Query: 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLS 462
Y PE A DGW RTGDL ++D GFL+I R D+ G V P E+E LL+
Sbjct: 380 YYNNPEAN-AKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLT 438
Query: 463 HREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINA 522
H V++ AV+ PD G++ +A V + + ++EAE++ ++ +V+ YK +R F +A
Sbjct: 439 HPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDA 498
Query: 523 IPKSAAGKILRMELRK 538
+PKS GKI + +R+
Sbjct: 499 LPKSGYGKITKKMVRE 514
|
Length = 528 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 8e-56
Identities = 142/534 (26%), Positives = 242/534 (45%), Gaps = 79/534 (14%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G +++ E + A+YL +L K D ++ N ++ PI F +L G+ + N
Sbjct: 48 GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVN 107
Query: 127 PVNTESEISRQIQLS---------------------NPV-----------IAFATSSVVH 154
P+ T E+ Q+ S PV + F +++V+
Sbjct: 108 PLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVN 167
Query: 155 KLAKLKHRTILIDSPEFD-------SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
+ K + + PE+ ++ KH + ++ D+A + Y+ GTTG
Sbjct: 168 FVVKYVKKLV----PEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVA 223
Query: 208 KGVMLTHRNLTAAV--ASSFASSPKRVSPA--VMLFTMPYFHIYGLFFCFRAAALMETAV 263
KG MLTHRNL A + A + + ++ V++ +P +HI+ AL +
Sbjct: 224 KGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIF---------ALTANGL 274
Query: 264 VMQRF-----------DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
V + D+ +K +++ R T + + D D SSL+
Sbjct: 275 VFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMT 334
Query: 313 ACGAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRW-GSTGRLS 368
G + + + A ++ +V LV+AYGLTE++ + P + + GS G
Sbjct: 335 LGGGMAVQR----SVAERWKQVTGLTLVEAYGLTETSPAA--CINPLTLKEYNGSIGLPI 388
Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428
+A I D + G L G+ GEL I+GP +MKGY PE T+ + DGW+ TGD+ +
Sbjct: 389 PSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM 447
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488
DE GF++IVDR KD+I G+ V P E+E ++ V + A + PDE++G++ +V
Sbjct: 448 DEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIV 507
Query: 489 RQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542
++ +L ++ ++ YK+ R + F +PK+ GKILR ELR A
Sbjct: 508 KK-DPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAAKA 560
|
Length = 560 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 1e-55
Identities = 156/535 (29%), Positives = 238/535 (44%), Gaps = 87/535 (16%)
Query: 45 SSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTN 104
+LRA D D I + GLR ++ + + LA+ L + + D V
Sbjct: 7 DALRAAFA--DRDAPF-IETPDGLRYTYGDLDAASARLANLLVAL-GVKPGDRVAVQVEK 62
Query: 105 SIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL--KHR 162
S E LY + L G + P N T +E+ I + P + + L+K+
Sbjct: 63 SPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAG 122
Query: 163 TILIDSPEFDSMTMSWNSKHEL-DRAKVCQS----------DVAAIMYSSGTTGRVKGVM 211
+ T+ + L + A D+AAI+Y+SGTTGR KG M
Sbjct: 123 APHV-------ETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAM 175
Query: 212 LTHRNLTAAVASSFASSPK---RVSPA-VMLFTMPYFHIYGLFF----CFRAAALMETAV 263
L+H NL S A + R +P V++ +P FH +GLF A A M +
Sbjct: 176 LSHGNL-----LSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASM---I 227
Query: 264 VMQRFDLKMMLKA---------VEEFRV---THAAVTPPIVVAMSKGGSTDGYDLSSLET 311
+ +FD +L V F +T E
Sbjct: 228 FLPKFDPDAVLALMPRATVMMGVPTFYTRLLQEPRLTR--------------------EA 267
Query: 312 VA------CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP-DECRRWGST 364
A G+APL +T F + +L + YG+TE+ T P D RR G+
Sbjct: 268 AAHMRLFISGSAPLLAETHREFQERTGHAIL-ERYGMTET---NMNTSNPYDGERRAGTV 323
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424
G G+ ++ DPETG LPPG+ G + ++GP + KGY PE T+ DG+ TGD
Sbjct: 324 GFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGD 383
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI--PYPDEEAGQM 482
L IDE G++ IV R KDLI GY V P E+E + V ++AVI P+PD G+
Sbjct: 384 LGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPD--FGEG 441
Query: 483 PMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
A VV +P ++L+EA I+ + +++ +K+ +RV F++ +P++ GK+ + LR
Sbjct: 442 VTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLR 496
|
Length = 504 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 1e-54
Identities = 130/486 (26%), Positives = 222/486 (45%), Gaps = 28/486 (5%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
+++ E N + L+ + + + ++ ++ E P ++ + +G + P N +
Sbjct: 31 LTYGELQEEVNRWGNALRE-LGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLL 89
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLA-------KLKHRTILIDSPEF-DSMT-MSWNS 180
T + + S + + + L L+H ++ + S + +
Sbjct: 90 TPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQLIATA 149
Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
EL+ A D+A +YSSG+TGR KGV+ H ++ A ++A + ++ ++F+
Sbjct: 150 AEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLV-TAEAYAKNVLGITEDDVVFS 208
Query: 241 MP-YFHIYGL----FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
F YGL +F A T V+M +R + +E ++ T P + A
Sbjct: 209 AAKLFFAYGLGNGLYFPLSVGA---TTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAA 265
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
M DLSSL L + + F + ++ G TE +F +
Sbjct: 266 MLAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELF-GLEILDGIGSTEMLH-IFLSNR 323
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
P + +G++G+ G E K+VD + G+ + G+ GEL +RG + GY E T T
Sbjct: 324 PGAVK-YGTSGKPVPGYEVKLVDED-GEEVADGEIGELWVRGDSSAAGYWNRREKTRETF 381
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474
+ W RTGD Y DEDG+ + R D++K G V+P E+E LL H V +AAV+
Sbjct: 382 V-GEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGA 440
Query: 475 PDEEAGQMPMAFVV---RQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKI 531
DE+ P AFVV S E E+ +FV +++PYK R + F++ +PK+A GKI
Sbjct: 441 EDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGKI 500
Query: 532 LRMELR 537
R +LR
Sbjct: 501 QRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 1e-54
Identities = 115/365 (31%), Positives = 175/365 (47%), Gaps = 20/365 (5%)
Query: 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFT 240
L A D A I+++SG+ G KGV+L+HRNL A +A+ + + V +L
Sbjct: 137 LFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDV----LLGA 192
Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQR--FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
+P FH +GL L VV D K + + + +++ T TP + ++
Sbjct: 193 LPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLRGYAR- 251
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
+ D SSL V GA L + T F KF + +++ YG TE + + +V
Sbjct: 252 -NAHPEDFSSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVI--SVNTPMG 307
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA-TLLPD 417
+ G+ GR G+E +IV PET + LP G+ G L +RGP +M GY+ E TS +L D
Sbjct: 308 NKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGD 367
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH-REVADAAVIPYPD 476
GW TGD+ IDEDGFL IV RLK K G V+ +E LL E + A + PD
Sbjct: 368 GWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVPD 427
Query: 477 EEAGQMPMAFVVRQPHSSLNEAEIMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRME 535
E+ G+ + L+ E+ + + R++ ++ IP +GK
Sbjct: 428 EKKGEKIVLLTT---TEDLDPEELNAILREAGLPNLAVPRKILHVDEIPLLGSGKTDYRG 484
Query: 536 LRKVA 540
L+K+A
Sbjct: 485 LKKLA 489
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 2e-53
Identities = 139/523 (26%), Positives = 233/523 (44%), Gaps = 67/523 (12%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G +++ E + +LA++LQ+ L+K ++ N ++ P+ ++L G ++ N
Sbjct: 46 GKAITYGELDELSRALAAWLQS-RGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVN 104
Query: 127 PVNTESEISRQ---------IQLSNPVIAFATSSVVHKLAKLKHRTILIDS--------- 168
P+ T E+ Q + L N FA ++V LAK + +++ S
Sbjct: 105 PLYTPRELEHQLKDSGAEAIVVLEN----FA-TTVQQVLAKTAVKHVVVASMGDLLGFKG 159
Query: 169 -------PEFDSMTMSWN--------------SKHELDRAKVCQSDVAAIMYSSGTTGRV 207
M +W+ ++ K+ DVA + Y+ GTTG
Sbjct: 160 HIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVS 219
Query: 208 KGVMLTHRNLTAAVASSFA------SSPKRVSPAVMLFTMPYFHIYGLFFCF----RAAA 257
KG L HRN+ A V A R + +P +HI+ L C R
Sbjct: 220 KGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGG 279
Query: 258 LMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAA 317
++ D+ +K +++++V + A+ D D S L G
Sbjct: 280 R--NILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGM 337
Query: 318 PLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374
+ + A ++ ++ + + YGL+E T+ V D G+ G E
Sbjct: 338 AVQR----PVAERWLEMTGCPITEGYGLSE-TSPVATCNPVDATEFSGTIGLPLPSTEVS 392
Query: 375 IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434
I D + G+ LP G+ GE+ IRGP +M GY P+ T+ + DG+ RTGD+ +DE G+
Sbjct: 393 IRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYT 451
Query: 435 FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS 494
IVDR KD+I G+ V P E+E ++ SH V + A + PDE +G+ FVV++ +
Sbjct: 452 KIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKK-DPA 510
Query: 495 LNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
L E ++ F +++ YK+ + V F +PK+ GKILR ELR
Sbjct: 511 LTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELR 553
|
Length = 557 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 2e-52
Identities = 146/540 (27%), Positives = 239/540 (44%), Gaps = 64/540 (11%)
Query: 42 DYVSSLRATLPWRDDDTVALI--NSVTGL--RVSFSEFTRRTNSLASYLQNVTRL--SKN 95
D + + A+ P D A+ TG R ++ E + +A L RL +
Sbjct: 28 DDLDACVASCP----DKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGL---ARLGVGRG 80
Query: 96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-- 153
D N E +LY + +G +++P P+ E E+S ++ A S V+
Sbjct: 81 DVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSF-------MLKHAESKVLVV 133
Query: 154 -----------------HKLAKLKHRTILIDSPEFDS-----MTMSWNSKHE----LDRA 187
+L L+H +++ DS +T +W + + L R
Sbjct: 134 PKTFRGFDHAAMARRLRPELPALRH-VVVVGGDGADSFEALLITPAWEQEPDAPAILARL 192
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
+ DV ++Y+SGTTG KGVM T L A + +A + V+L P H
Sbjct: 193 RPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVP-YAERLGLGADDVILMASPMAHQT 251
Query: 248 GLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
G + ++ V+Q +D + + VT + P + +++ G +
Sbjct: 252 GFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPV 311
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR 366
SSL T C AP+ ++ A +V A+G+TE+ A + + R + G
Sbjct: 312 SSLRTFLCAGAPIPG-ALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGC 370
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLC 426
G+E ++VD + G LP G+ G L +RG + GY+ P++ DGW TGDL
Sbjct: 371 PLPGVEVRVVDAD-GAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGDLA 427
Query: 427 YIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAF 486
ID DG++ I R KD+I G + E+E LL H +A A++ YPDE G+ AF
Sbjct: 428 RIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAF 487
Query: 487 VVRQPHSSLNEAEIMEF-----VARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541
VV +P SL+ E++EF VA+Q P R+ +A+P++ +GKI + LR++
Sbjct: 488 VVPRPGQSLDFEEMVEFLKAQKVAKQYIP----ERLVVRDALPRTPSGKIQKFRLREMLR 543
|
Length = 547 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 4e-52
Identities = 139/543 (25%), Positives = 214/543 (39%), Gaps = 95/543 (17%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
++++E RR ++A+ LQ + D +L+ ++ +F L G I PA P
Sbjct: 23 TLTYAELDRRARAIAARLQ--ALGAPGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPP 80
Query: 129 NTESEISRQIQL----SNPVIAFATSSVVHKLAK-------LKHRTILIDSPEFDSMTMS 177
++ + TS+V+ L L I D +
Sbjct: 81 RRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALA---- 136
Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSP 234
+ D+A + Y+SG+TG KGVM+TH NL A A+A +F P
Sbjct: 137 ---AADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDP----D 189
Query: 235 AVMLFTMPYFH----IYGLFFCF---RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
V + +P +H I GL LM ++R L+A+ +R T +
Sbjct: 190 DVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPLR--WLEAISRYRATVSGA 247
Query: 288 TPP----IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF------PKVVLV 337
P + V + G DLSS GA P+ DT+ FA +F P+ L
Sbjct: 248 -PNFAYDLCVRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFL- 305
Query: 338 QAYGLTESTAGV--------FRTVGPDECRRWG-----------------STGRLSAGLE 372
YGL E+T V + D S GR G E
Sbjct: 306 PCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHE 365
Query: 373 AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL------PDGWMRTGDLC 426
+IVDPET LP G+ GE+ +RGP++ GY PE T+ T GW+RTGDL
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425
Query: 427 YIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD---AAVIPYPDEEAGQMP 483
++ DG L++ RLKDLI +G P ++E + AA + ++
Sbjct: 426 FLH-DGELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEERLV 484
Query: 484 MAFVVRQPHSSLNEAEIMEFVARQVS------PYKKIRRVAFIN--AIPKSAAGKILRME 535
+ VR+ + A + E + V+ P V + +PK+++GKI R
Sbjct: 485 VVAEVRRRGLPADLAALAEAIRAAVAREHGVAP----ADVVLVRPGTLPKTSSGKIQRRA 540
Query: 536 LRK 538
R+
Sbjct: 541 CRE 543
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 4e-51
Identities = 143/512 (27%), Positives = 227/512 (44%), Gaps = 44/512 (8%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D +A+I+ L S++E +R + LA+ L+ + + DT V N E I +F
Sbjct: 40 RYPDRIAVIDGERRL--SYAELDQRADRLAAGLRRLG-IKPGDTVLVQLPNVAEFYITFF 96
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP---VIAFATS---------SVVHKLAKLKH 161
+LL LGV A P + SE+ ++A S +V K L+H
Sbjct: 97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRH 156
Query: 162 RTILIDSPEFDSMTMSWNSKHEL--DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR---- 215
+ ++ + + L +VA S GTTG K + TH
Sbjct: 157 VIVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYY 216
Query: 216 NLTAAVASSFASSPKR---VSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
++ A+ PA F + G+F T V+ ++
Sbjct: 217 SVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA------GGTVVLAPDPSPEL 270
Query: 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332
+E VT A+ PP+ + + DLSSL + G A L A + P
Sbjct: 271 CFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSA----TLARRVP 326
Query: 333 KVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGK 388
V+ L Q +G+ E R P E + GR LS E ++VD + G+ + PG+
Sbjct: 327 AVLGCQLQQVFGMAEGLVNYTRLDDPPE-IIIHTQGRPLSPDDEVRVVDAD-GNPVAPGE 384
Query: 389 EGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKG 448
GEL RGP ++GY PE + DG+ R+GDL D DG+L + R+KD I G
Sbjct: 385 VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGG 444
Query: 449 YQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV-RQPHSSLNEAEIMEFVARQ 507
++A E+E+LLL H V DAA++ PDE G+ AF+V ++P L A++ F+ +
Sbjct: 445 EKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEP--PLRAAQLRRFLRER 502
Query: 508 -VSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
++ +K R+ F++++P +A GKI + LR+
Sbjct: 503 GLAAFKLPDRIEFVDSLPLTAVGKIDKKALRR 534
|
Length = 542 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 1e-50
Identities = 138/498 (27%), Positives = 215/498 (43%), Gaps = 92/498 (18%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
S+++ ++R+N +A++L+ + + D ++ N E+ + + LG ++ PA +
Sbjct: 1 YSYAQLSKRSNRVANFLRK-HGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLL 59
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
T +++ + P A RA
Sbjct: 60 TPADLRDRFSRGKPKAIVADE----------------------------------TRAD- 84
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA-------------SSPKRVSPAV 236
D + ++SGTTG K V+ TH + S+ SSP A
Sbjct: 85 ---DPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDIHLNISSPGWAKHA- 140
Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAVVM---QRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
+ F A V RFD + L A+E+F VT PP V
Sbjct: 141 -------------WSSFFAPWNAGATVFGINYPRFDARRYLGALEKFGVT-TFCAPPTVW 186
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV---- 349
M YD+ E V+ G PL + I + + + YG TE+TA +
Sbjct: 187 RMFIQQDLAQYDVRLREAVSAGE-PLNPEVIERVKKAW-GLTIRDGYGQTETTAMIGNSP 244
Query: 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI----RGPTIMKGYVG 405
+ V P GS GR G ++D E P EGE+++ R +M GY+G
Sbjct: 245 GQKVKP------GSMGRPLPGYRVVLLDDE--GKEIPVTEGEIALDLGDRPIGLMLGYMG 296
Query: 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHRE 465
+PE T A G+ RTGD Y DEDG+L+ V R D+ K Y+++P E+E LL H
Sbjct: 297 DPEKT-AAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPA 355
Query: 466 VADAAVIPYPDEEAGQMPMAFVVRQPH---SSLNEAEIMEFVARQVSPYKKIRRVAFINA 522
VA+AAV+P PD +P A++V +P S E+ V +++PYK+IRR+ F+
Sbjct: 356 VAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFVGE 415
Query: 523 IPKSAAGKILRMELRKVA 540
+PK+ +GKI R+ELRK+
Sbjct: 416 LPKTISGKIRRVELRKIE 433
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-50
Identities = 123/357 (34%), Positives = 183/357 (51%), Gaps = 20/357 (5%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS----SFASSPKRVSPAVMLFTMPYFHIYG 248
DVA + Y+ GTTG KG MLTH NLT+AV+ S R ++ +P FHIY
Sbjct: 193 DVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYA 252
Query: 249 L----FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
L R L+ + QRFD+ + + +EE R T P + +A++ S +
Sbjct: 253 LTVILLRSLRRGDLIS---LHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKR 309
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE--STAGVFRTVGPDECRRWG 362
DLSSL T+ G APL + F K L +G+TE S GPD + G
Sbjct: 310 DLSSLATIGSGGAPLPVEVANFFERKTGLK-LKSGWGMTETCSPGTGHPPEGPD---KPG 365
Query: 363 STGRLSAGLEAKIVD-PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
S G + G+E +V + LPPG+ GEL IRGP + +GY PE ++ + D ++
Sbjct: 366 SIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL- 424
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ 481
TGD+ Y+D DG+ F+VDR KD+I G+ V P +E + H V + VI PD+ G+
Sbjct: 425 TGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGE 484
Query: 482 MPMAFV-VRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
AFV +R + E+ F+A ++ ++ V F++ +P++ GK+ R ELR
Sbjct: 485 AAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 4e-50
Identities = 114/354 (32%), Positives = 174/354 (49%), Gaps = 21/354 (5%)
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV----SPAVMLFTMPYFH----I 246
+++Y+SGTTG KGV T A++ + L T P +H
Sbjct: 155 QSMIYTSGTTGHPKGV--RRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNA 212
Query: 247 YGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK--GGSTDGY 304
YGL RA L V+ RFD + +L+ +E R+TH + P + + + K Y
Sbjct: 213 YGL----RAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKY 268
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
D+SSL V AAP D A + V+ + YG TES A F T D G+
Sbjct: 269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPVI-YEYYGSTESGAVTFAT-SEDALSHPGTV 326
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK-GYVGEPEVTSATLLPDGWMRTG 423
G+ + G E + VD E G LP G+ GE+ R Y +PE A + G++ +G
Sbjct: 327 GKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPE-KRAEIDRGGFITSG 384
Query: 424 DLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMP 483
D+ Y+D DG+LF+ DR +D++ G + PAE+E +L + V D AV PD E G+
Sbjct: 385 DVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEAL 444
Query: 484 MAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
MA V QP ++L+EA+I + +++ YK + + + +P+ +GKI + LR
Sbjct: 445 MAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLR 498
|
Length = 509 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 4e-50
Identities = 136/504 (26%), Positives = 218/504 (43%), Gaps = 28/504 (5%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
D A+I + TG V++ E R+N LA +++ L + D + N++ + +
Sbjct: 9 TTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLG-LKRGDHVAIFMENNLRYLEVCW 67
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP---VIAFATSSVVHKLAK----LKHRTILI 166
+ G+ + N T +E + + S + + A V L K ++HR +L
Sbjct: 68 AAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLD 127
Query: 167 ---DSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVM--LTHRNLTAA- 220
+ F + A +S ++YSSGTTGR KG+ L +
Sbjct: 128 GDGELEGFVGYAEAVAGLPATPIAD--ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185
Query: 221 -VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEE 279
+ + S V L P +H L T +VM+ FD + L +EE
Sbjct: 186 PLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALIEE 245
Query: 280 FRVTHAAVTPPIVVAMSK--GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
+ VTH + P + M K D YDLSSLE AAP + ++
Sbjct: 246 YGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIH- 304
Query: 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
+ Y TE G + G+ GR G + I+D + G LPPG+ G + G
Sbjct: 305 EYYAATEG-LGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG 361
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRT-GDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAEL 456
+ Y+ +P T+ PDG T GD+ Y+DEDG+L++ DR +I G + P E
Sbjct: 362 RPFE-YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEA 420
Query: 457 EHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEA---EIMEFVARQVSPYKK 513
E+LL++H +VADAAV P+E+ G+ A V A E++ F +++S K
Sbjct: 421 ENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKC 480
Query: 514 IRRVAFINAIPKSAAGKILRMELR 537
R + F + +P+ GK+ + LR
Sbjct: 481 PRSIDFEDELPRLPTGKLYKRLLR 504
|
Length = 511 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 4e-49
Identities = 117/353 (33%), Positives = 180/353 (50%), Gaps = 21/353 (5%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIYGL-- 249
DVA I ++SGTTG KG M HR++ A +F + +P V + + P +GL
Sbjct: 148 DVALIGFTSGTTGLPKGTMHFHRDILAI-CDAFPRHVLQPTPDDVFIGSPPLAFTFGLGG 206
Query: 250 --FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
F R A +AV++++ ++LKA++E R T P AM +D+S
Sbjct: 207 LVLFPLRFGA---SAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLIK--VKAFDIS 261
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL 367
SL L + + + ++ G TE +F + +E + G+TG+
Sbjct: 262 SLRKCVSAGETLPAKVWQDWYER-TGLKIIDGIGATEMLH-IFIS-ANEENAKPGATGKP 318
Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCY 427
G EA+IVD + G+ +P G+ G L++RGPT + Y+ + + DGW TGD+
Sbjct: 319 VPGYEARIVD-DQGNEVPRGEAGRLAVRGPTGCR-YLDDERQQEY--VRDGWNVTGDIFR 374
Query: 428 IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFV 487
DEDG+ V R D+I GY +A E+E LL+H +VA+ AVI PDEE GQ+ A +
Sbjct: 375 QDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCAHI 434
Query: 488 V-RQPH--SSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
V R + L + +FV ++PYK R + F++A+PK+ GKI R LR
Sbjct: 435 VLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 4e-48
Identities = 126/498 (25%), Positives = 202/498 (40%), Gaps = 68/498 (13%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
+ D AL V G ++++E R + LA+ L + D V S +
Sbjct: 3 KHPDRPAL--VVGGDTLTYAELKERADRLAARLLALG-GRAGDPVAVYGHKSPDAYAAIL 59
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
+ L G P +P I++ ++ + P
Sbjct: 60 ACLKAGAAYVPLDPSQPAERIAKILEAAGPAALV-------------------------- 93
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA---SSFASSPK 230
D+A I+++SG+TG+ KGV ++H NL + + F +
Sbjct: 94 ---------------ADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEG 138
Query: 231 RVSPAVMLFTMPY---FHIYGLFFCFRAAALMETAVVMQRF---DLKMMLKAVEEFRVTH 284
V P+ ++ LF + A T V+ + D + + ++E +T
Sbjct: 139 ----DVFSNQAPFSFDLSVFDLFPALASGA---TLYVIPKEQIADPLALFEFLKEHGLTV 191
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
P + + L SL T L K A +FP ++ YG TE
Sbjct: 192 WVSVPSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTE 251
Query: 345 STAGVFR-TVGPDECRRWGS--TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401
+T V V P+ R G GL A I+D E G +PPG+EGEL I GP +
Sbjct: 252 ATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALILD-EDGRPVPPGEEGELVIAGPQVSP 310
Query: 402 GYVGEPEVTSATLLPD---GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458
GY+ PE T+ D W RTGDL Y+++DG L + R IK GY++ E+E
Sbjct: 311 GYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEA 370
Query: 459 LLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVA 518
L + V +A V+P P E +AFVV +L+ + + + +++ PY RR
Sbjct: 371 ALRALPGVEEAVVLPVPKGEKVVRLVAFVV-GKEGALDTKALKKELKKRLPPYMIPRRFV 429
Query: 519 FINAIPKSAAGKILRMEL 536
+++++P +A GKI R L
Sbjct: 430 YLDSLPLNANGKIDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 6e-48
Identities = 141/537 (26%), Positives = 227/537 (42%), Gaps = 82/537 (15%)
Query: 48 RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107
+ L W DDD I +F + +N A++ + + + K DT + E
Sbjct: 33 KLALIWCDDDGEEKI-------FTFGDLKDYSNKAANFFKALG-IGKGDTVMLTLKRRYE 84
Query: 108 IPILYFSLLSL---GVIISPANPVNTESEISRQIQLSN----------PVIAFATSSVVH 154
+FS+L+L G I PA + T +I +I+ + V +
Sbjct: 85 ---FWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPE 141
Query: 155 KLAKLKHRTILIDSPEFDSMTMSWNSKHEL------------DRAKVCQSDVAAIMYSSG 202
+ + PE W + C D+ + ++SG
Sbjct: 142 CGSPTLLVLVGDPVPE------GWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTSG 195
Query: 203 TTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP--------YFHIYGLFFCFR 254
TTG K M+ H + A + V + T+ + +YG +
Sbjct: 196 TTGMPK--MVEHDHTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIA-- 251
Query: 255 AAALMETAVV---MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
AV +FD K +L+ +E++ VT P I + K + YDLSSL
Sbjct: 252 -----GAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKEDLSK-YDLSSLRY 305
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR--RWGSTGRLSA 369
PL + F + + L++ +G TE+T T+ + GS G+ S
Sbjct: 306 CTTAGEPLNPEVFNTF-KEKTGIKLMEGFGQTETTL----TIATFPWMEPKPGSMGKPSP 360
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIR----GPTIM-KGYVGEPEVTSATLLPDGWMRTGD 424
G + I+DP+ G S G+EGE+ IR P + GY +PE T+ DG+ TGD
Sbjct: 361 GYDIDIIDPD-GKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWH-DGYYHTGD 418
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484
++DEDG+L+ V R DLIK GY++ P E+E L+ H V + AV PD GQ+
Sbjct: 419 TAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVK 478
Query: 485 AFVV----RQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
A +V +P L + E+ + V + +PYK R + F++ +PK+ +GKI R+E+R
Sbjct: 479 ATIVLTKGYEPSEEL-KKELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEIR 534
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 8e-48
Identities = 113/349 (32%), Positives = 173/349 (49%), Gaps = 20/349 (5%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256
++ +SGTTG KG + A +A + P R L P FH G A
Sbjct: 212 VILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAG-ETTLLPAPMFHATGWAHLTLAM 270
Query: 257 ALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA--MSKGGSTDG-YDLSSLETVA 313
AL T V+ +RFD + L+ + + + T A V P++++ + G YD SSL+ +
Sbjct: 271 ALGSTVVLRRRFDPEATLEDIAKHKAT-ALVVVPVMLSRILDLGPEVLAKYDTSSLKIIF 329
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPDECRRWGST-GRLSAGL 371
+ L + F V L YG TE + A + P++ T GR G+
Sbjct: 330 VSGSALSPELATRALEAFGPV-LYNLYGSTEVAFATI---ATPEDLAEAPGTVGRPPKGV 385
Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVG--EPEVTSATLLPDGWMRTGDLCYID 429
KI+D E G+ +P G G + + +GY + ++ DG + +GD+ Y D
Sbjct: 386 TVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQII------DGLLSSGDVGYFD 438
Query: 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVR 489
EDG LF+ R D+I G V PAE+E LL H +V +AAVI DEE GQ AFVV+
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVK 498
Query: 490 QPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
P ++L+E I ++V ++ YK R V F++ +P++ GK+L+ ELR+
Sbjct: 499 APGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELRE 547
|
Length = 549 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 9e-47
Identities = 153/536 (28%), Positives = 219/536 (40%), Gaps = 101/536 (18%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R +++E R LAS L + + DT VL N + +F + G ++ N
Sbjct: 41 DRRRTWAETYARCRRLASALARRG-IGRGDTVAVLLPNIPAMVEAHFGVPMAGAVL---N 96
Query: 127 PVNTESEISRQIQLSNPVIAF--------------ATSSVVHK-LAKLKHRTIL---IDS 168
+NT +L IAF + V + LA L L +D
Sbjct: 97 TLNT--------RLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDD 148
Query: 169 PEFDSMTMSWNSKHELDRAKVCQS--------------DVAAIMYSSGTTGRVKGVMLTH 214
PE+ LD S D A+ Y+SGTTG KGV+ H
Sbjct: 149 PEYPGGR----FIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHH 204
Query: 215 RN--LTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
R L A PK V L+T+P FH G F + AA T V +++ D K+
Sbjct: 205 RGAYLNALSNILAWGMPKH---PVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKL 261
Query: 273 MLKAVEEFRVTH--AAVTPPIVVAM---SKGGSTDGYDLSSLETVACGAAP----LGKDT 323
+ + E VTH A PIV++ + G D VA GAAP + K
Sbjct: 262 IFDLIREHGVTHYCGA---PIVLSALINAPAEWRAGIDHPVHAMVA-GAAPPAAVIAKME 317
Query: 324 IMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE-CRRWGSTGRLSAGLEAKI------- 375
+ F L YGLTE T GP C L A++
Sbjct: 318 EIGFD-------LTHVYGLTE-------TYGPATVCAWQPEWDALPLDERAQLKARQGVR 363
Query: 376 ---------VDPETGDSLPPGKE--GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424
+DP+T +P E GE+ RG +MKGY+ P+ T GW TGD
Sbjct: 364 YPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEA-FAGGWFHTGD 422
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484
L + DG++ I DR KD+I G ++ E+E +L H V AAV+ PD + G++P
Sbjct: 423 LAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPC 482
Query: 485 AFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
AFV + +S E EI+ ++ +K + V F +PK++ GKI + LR+ A
Sbjct: 483 AFVELKDGASATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQA 537
|
Length = 545 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 7e-46
Identities = 139/502 (27%), Positives = 221/502 (44%), Gaps = 38/502 (7%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL++ GLR+++SE R +A+ L + A V++ NS++ I
Sbjct: 13 RAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVA-VVAPNSVDAVIALL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
+L LG + + NP +EI+ I+ ++ V + I
Sbjct: 72 ALHRLGAVPALMNPRLKPAEIAELIKRGE------MTAAVIAVDAQVMDAIFQSGSGVRV 125
Query: 174 MTMSWNSKHELDRAKVCQS-------------DVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
+ + +L +S A + Y+SGTTG KG ++ R +
Sbjct: 126 LALG-----DLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESR 180
Query: 221 VASSFASSPKRV-SPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVE 278
V + R V+L MP +H+ G F AA AL T VV++ FD LK +E
Sbjct: 181 VLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIE 240
Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
+ RVT TP + A++ L SLE V A + D ++ ++ V
Sbjct: 241 QERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATM-PDAVLERVNQHLPGEKVN 299
Query: 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSI-R 395
YG TE+ ++ R G+ R E +IV LP G+EGEL +
Sbjct: 300 IYGTTEAMNSLY-----MRDPRTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAA 354
Query: 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAE 455
GY+ +P+ T A L DGW RT D+ +D G + I+ R+ D+I G + P+E
Sbjct: 355 ADATFTGYLNQPQAT-AEKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSE 413
Query: 456 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEF-VARQVSPYKKI 514
+E +L V + VI PDE GQ A VV + +L+ + F A +++ +K+
Sbjct: 414 VERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETLSADALDTFCRASELADFKRP 473
Query: 515 RRVAFINAIPKSAAGKILRMEL 536
RR F++ +PK+A K+LR +L
Sbjct: 474 RRYFFLDELPKNAMNKVLRRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 1e-45
Identities = 134/501 (26%), Positives = 220/501 (43%), Gaps = 46/501 (9%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R S+ E R + +A L + + D N E LY + +G +++P P+
Sbjct: 53 RFSYRELDCRVDRIAVGL-ARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPI 111
Query: 129 NTESEISRQIQLSNPVIAFATSSVV---HKLAKLKH--------------RTILI---DS 168
E E+S ++ A S V H R +++ D
Sbjct: 112 FRERELSF-------MLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG 164
Query: 169 PE-FDSMTMSWNSKHELDRAKVCQ------SDVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
+ FD + M+ D A + DV ++Y+SGTTG KGVM T L + +
Sbjct: 165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNI 224
Query: 222 ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEF 280
+A + V+L P H G + ++ V+Q ++ + + E
Sbjct: 225 HP-YAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRET 283
Query: 281 RVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340
VT + P + + + G + SL T C AP+ ++ A + ++V A+
Sbjct: 284 GVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPI-PGILVERAWELLGALIVSAW 342
Query: 341 GLTESTAGVFRTVGPDECRRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398
G+TE+ G PD+ ST GR G+E K++D G L G+ G L +RG +
Sbjct: 343 GMTEN--GAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN-GAKLSQGETGRLLVRGCS 399
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458
GY+ P + S +GW TGDL + D +G++ I R KD+I G + E+E+
Sbjct: 400 NFGGYLKRPHLNSTD--AEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIEN 457
Query: 459 LLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKI-RRV 517
LL H VA A++ YPDE G+ A VV +P +L+ A ++ F+ Q + I R+
Sbjct: 458 LLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERL 517
Query: 518 AFINAIPKSAAGKILRMELRK 538
++A+P + AGKI + LR+
Sbjct: 518 EVVDALPATPAGKIQKFRLRE 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 3e-45
Identities = 85/206 (41%), Positives = 124/206 (60%), Gaps = 12/206 (5%)
Query: 337 VQAYGLTES--TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE--GEL 392
V+ YG+TE+ T R G RR G G AG+E ++VD E G +P E GEL
Sbjct: 270 VERYGMTETLITLST-RADGE---RRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGEL 324
Query: 393 SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLK-DLIKYKGYQV 451
+RGPT+ GY+ P+ T+A DGW RTGD+ +D DG IV R DLIK GY++
Sbjct: 325 QVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRI 384
Query: 452 APAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPY 511
E+E LL H V +AAV+ PD++ GQ +A+VV + E+++FVA+Q+S +
Sbjct: 385 GAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVV--GADDVAADELIDFVAQQLSVH 442
Query: 512 KKIRRVAFINAIPKSAAGKILRMELR 537
K+ R V F++A+P++A GK+L+ +L
Sbjct: 443 KRPREVRFVDALPRNAMGKVLKKQLL 468
|
Length = 471 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 9e-45
Identities = 141/503 (28%), Positives = 211/503 (41%), Gaps = 51/503 (10%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G R +++E R + A L + + D ++ N IE ++ LG I P N
Sbjct: 44 GTRWTYAEAARAAAAAAHALA-AAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPIN 102
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSPEFDSMTMSWN- 179
++ ++ S + ++++ L L+D+P S+ W+
Sbjct: 103 TALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWST 162
Query: 180 -----SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH-------RNLTAAVASSFAS 227
A V D AAI+Y+SGTTG KGV H RN +
Sbjct: 163 APLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLE----- 217
Query: 228 SPKRVSPAVMLFT-MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVT--- 283
+ +L+T +P FH L F+A T V+ RF AV T
Sbjct: 218 ----IGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTY 273
Query: 284 --HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341
A V I+++ S + + VA G AF +F V L+ YG
Sbjct: 274 LLGAMV--SILLSQPARESDRAHRV----RVALGPGVPAAL-HAAFRERF-GVDLLDGYG 325
Query: 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP---T 398
TE+ V +R GS GRL+ G EA++VD E LP G+ GEL +R
Sbjct: 326 STETNF-VIAVTHGS--QRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFA 381
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458
GY G PE T + W TGD D DG+ VDR+KD I+ +G ++ E+E
Sbjct: 382 FATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQ 440
Query: 459 LLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVA 518
+LLSH VA AAV P P E MA VV + ++L ++ +++ + R V
Sbjct: 441 VLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVE 500
Query: 519 FINAIPKSAAGKILRMELRKVAV 541
F+ A+PK+ GK+ + LR+ V
Sbjct: 501 FVAALPKTENGKVQKFVLREQGV 523
|
Length = 542 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 9e-45
Identities = 101/356 (28%), Positives = 161/356 (45%), Gaps = 24/356 (6%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF--HIYGL 249
D+A ++Y+SG+TGR KGVM+ HR L +A V+ F F ++ +
Sbjct: 93 DDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWEI 152
Query: 250 FFCFRAAALME--TAVVM---QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
F L+ T V+ D + + + + E R+T + P ++ A+ +
Sbjct: 153 F-----PPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDAL--EPA 205
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV--FRTVGPDECRRWG 362
L SL V G L + + + FP LV AYG TE+T V D
Sbjct: 206 ALPSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSV 265
Query: 363 STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM-- 420
GR A ++D E +P G GEL I G + +GY+ PE+T+ +PD +
Sbjct: 266 PIGRPIANTRVYVLD-EDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGP 324
Query: 421 -----RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475
RTGDL DG L + R D +K +GY++ E+E LL+H V +A V+
Sbjct: 325 GERLYRTGDLARWLPDGNLEFLGRADDQVKIRGYRIELGEIEAALLAHPGVREAVVVARE 384
Query: 476 DEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKI 531
D + +A+VV + L+ AE+ F+A ++ Y ++A+P + GK+
Sbjct: 385 DGAGEKRLVAYVVPAAGAELDAAELRAFLAERLPDYMVPSAFVVLDALPLTPNGKV 440
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-44
Identities = 114/423 (26%), Positives = 188/423 (44%), Gaps = 36/423 (8%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG---VIISPANP 127
++ E R N LA +L+ + D VL S E+ + ++L G V + PA P
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRA 187
++ ++ + + S++ +LA L IL+D E ++ + A
Sbjct: 61 ---AERLAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAP--PPPDA 115
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPY--- 243
D+A ++Y+SG+TGR KGV++THR+L +A + + P +L
Sbjct: 116 PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAW--LARRYGLDPDDRVLQFASLSFD 173
Query: 244 FHIYGLFFCFRAAALMETAVV----MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
+ +F A A T VV +R D ++ + E VT +TP ++ ++
Sbjct: 174 ASVEEIFGALLAGA---TLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLA--- 227
Query: 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDEC 358
+ L+SL V G L + + ++ P L+ YG TE+T V PD+
Sbjct: 228 AALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDA 287
Query: 359 RRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
R GR A ++D + +P G GEL I GP + +GY+ PE+T+ +P
Sbjct: 288 PRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVP 346
Query: 417 DGWM--------RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468
D + RTGDL DG L + R+ D +K +GY++ E+E LL H V +
Sbjct: 347 DPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVRE 406
Query: 469 AAV 471
A V
Sbjct: 407 AVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 5e-44
Identities = 131/546 (23%), Positives = 208/546 (38%), Gaps = 53/546 (9%)
Query: 32 PPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91
P DA D ++SL D VALI+ +S +E + LA++L
Sbjct: 1 TPHDA-APRADTLASLLDAHARARPDAVALIDE--DRPLSRAELRALVDRLAAWLAAQG- 56
Query: 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI-----A 146
+ + D V N IE +L+ + LG + N E++ +
Sbjct: 57 VRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPG 116
Query: 147 FATSSVVHKLAKLKH-------RTILIDS----------------PEFDSMTMSWNSKHE 183
F LA + ++D +
Sbjct: 117 FKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPAAAGER 176
Query: 184 LDRAKVCQSDVAAIMYS-SGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLF 239
D A++++ SGTT K V+ L A+A ++ P AV+L
Sbjct: 177 AA-----DPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPG----AVLLA 227
Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
+P+ ++G A A V FD +A+ RVTH ++ +
Sbjct: 228 ALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA 287
Query: 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDEC 358
D S + + A A V L YG +E A V +
Sbjct: 288 GERA-DFPSARLFGFASFAPALGELAALARA-RGVPLTGLYGSSEVQALVALQPATDPVS 345
Query: 359 RRWGSTGRL-SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD 417
R GR S + DP+ G LP G+ GE+ IR P++M+GY+ P+ T+ L D
Sbjct: 346 VRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDD 405
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477
G+ RTGDL Y DG R+ D ++ G+ V PAE+EH L + VA A V+
Sbjct: 406 GYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGA-TR 464
Query: 478 EAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAG---KILRM 534
+ +P+AFV+ +S +EA +M ++ +K RV + A P + + KI +
Sbjct: 465 DGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKH 524
Query: 535 ELRKVA 540
LR++A
Sbjct: 525 RLREMA 530
|
Length = 540 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 6e-44
Identities = 133/493 (26%), Positives = 215/493 (43%), Gaps = 78/493 (15%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
S+ E + A+ L ++ + K + F L S E+ + L LG + P
Sbjct: 2 SYQELKELSARFANVLASLG-VGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190
I +++L + T L RT PE
Sbjct: 61 PEPIRDRLELGEAKVLITTPE-------LYERT----DPE-------------------- 89
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF-------------ASSPKRVSPAVM 237
D A + ++SGTTG+ KGV+ HR + A A++ + P V+
Sbjct: 90 --DPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPGWVTGTS- 146
Query: 238 LFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
YG+ A L +V+ FD + +EE +VT P + +
Sbjct: 147 ---------YGII----APLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRML 193
Query: 296 SKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
+ G YDLSSL +A PL + + + K + + + TE T +
Sbjct: 194 MRAGPELAARYDLSSLRHIASVGEPLNPEVV-VWGEKVLGMPIHDTWWQTE-TGAIMIAN 251
Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSL----PPGKEGELSIRG--PTIMKGYVGEP 407
P + GS GR G+EA +++ + GD L PG+ GEL+++ P++ +GY+G
Sbjct: 252 YPGIPVKPGSMGRPLPGIEAAVIERD-GDGLTPVTGPGQVGELALKPGWPSMFRGYLGNE 310
Query: 408 EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467
E +++ DGW TGDL Y DEDG+ + V R D+IK G+ V P E+E L+ H VA
Sbjct: 311 ERYASSF-VDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVA 369
Query: 468 DAAVIPYPDEEAGQMPMAFVVRQPHSSLNEA---EIMEFVARQVSPYKKIRRVAFINAIP 524
+A VI PD AG++ AFV +P +E E++ F +++ R + F++ +P
Sbjct: 370 EAGVIGKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHFVDNLP 429
Query: 525 KSAAGKILRMELR 537
K+ +GKI+R L+
Sbjct: 430 KTRSGKIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 2e-43
Identities = 138/517 (26%), Positives = 223/517 (43%), Gaps = 44/517 (8%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL++ ++++ + R +LAS L+ + L++ + + +E F
Sbjct: 12 RLPDATALVH--HDRTLTYAALSERVLALASGLRGLG-LARGERVAIYLDKRLETVTAMF 68
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------AKLKHRTILID 167
G + P NP+ +++ + N + +S + L I++
Sbjct: 69 GAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVG 128
Query: 168 SPEFDSMTMSWNSKHELDRAK----------VCQSDVAAIMYSSGTTGRVKGVMLTHRNL 217
P S + V SD+AAI+Y+SG+TGR KGV+L+HRNL
Sbjct: 129 DPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNL 188
Query: 218 TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277
A A S A+ + +L +P YG A + T V+ + +LKA+
Sbjct: 189 VAG-AQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKAL 247
Query: 278 EEFRVTHAAVTPPIVVAMS--KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335
E+ +T A PP+ ++ + L L T + GA P + T+ S P
Sbjct: 248 EKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYL-TNSGGAMP--RATLSRLRSFLPNAR 304
Query: 336 LVQAYGLTESTAGVFR--TVGPDEC-RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
L YGLTE+ FR + P+E RR S G+ E ++ + G PG+EGEL
Sbjct: 305 LFLMYGLTEA----FRSTYLPPEEVDRRPDSIGKAIPNAEVLVLRED-GSECAPGEEGEL 359
Query: 393 SIRGPTIMKGYVGEPEVTSATL-----------LPDGWMRTGDLCYIDEDGFLFIVDRLK 441
RG + GY +PE T+ LP+ + +GD DE+GFL+ V R
Sbjct: 360 VHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDTVRRDEEGFLYFVGRRD 419
Query: 442 DLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIM 501
++IK GY+V+P E+E + + VA+A PD GQ + V L+ A ++
Sbjct: 420 EMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALL 479
Query: 502 EFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
++ Y + A+P++A GKI R L K
Sbjct: 480 AECRARLPNYMVPALIHVRQALPRNANGKIDRKALAK 516
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 161 bits (408), Expect = 3e-43
Identities = 147/508 (28%), Positives = 231/508 (45%), Gaps = 40/508 (7%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D +A+I + S+ E +R ++LA+ L + + + DTA V N E I++F
Sbjct: 35 RYPDAIAIICGNR--QWSYRELDQRADNLAAGLTKLG-IKQGDTAVVQLPNIAEFYIVFF 91
Query: 114 SLLSLGVIISPANPVNTESEI---SRQIQLSNPVIAFATS---------SVVHKLAKLKH 161
+LL LGV A + +SE+ + QI+ + +I A S + KL L
Sbjct: 92 ALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTL-- 149
Query: 162 RTILIDSPEFDSMTMSW-NSKH-ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA 219
R I++ ++ W S + +VA S G+TG K + TH +
Sbjct: 150 RNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYY 209
Query: 220 AVASSFASSPKRVSPAVMLFTMPYFHIY-----GLFFCFRAAALMETAVVMQRFDLKMML 274
+V S L +P H Y G F A V+
Sbjct: 210 SVRRS-VEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGG---CVVLAPDPSPTDCF 265
Query: 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV 334
+E +VT A+ PP V + S DLSSL+ + G A A A + P V
Sbjct: 266 PLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGGAKFSA----AAARRVPAV 321
Query: 335 V---LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGKEG 390
L Q +G+ E R P E + + GR +S E ++VD + G+ + PG+ G
Sbjct: 322 FGCQLQQVFGMAEGLVNYTRLDDPAE-IIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETG 379
Query: 391 ELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQ 450
L RGP +GY PE +A +G+ TGDL + +G++ +V R KD I G +
Sbjct: 380 MLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEK 439
Query: 451 VAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV-ARQVS 509
+A E+E+LLL+H V DAA++ PDE G+ AF+V + +L A++ F+ R ++
Sbjct: 440 IAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRD-PALKAAQLRRFLRERGLA 498
Query: 510 PYKKIRRVAFINAIPKSAAGKILRMELR 537
YK RV F++++P +A GK+ + LR
Sbjct: 499 EYKLPDRVEFVDSLPLTAVGKVDKKALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 7e-43
Identities = 111/349 (31%), Positives = 172/349 (49%), Gaps = 22/349 (6%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256
I+ +SGTTG KG + + + +P R ++ P FH +G F A
Sbjct: 201 ILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVI-VAPMFHAWG-FSQLVLA 258
Query: 257 ALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPP----IVVAMSKGGSTDGYDLSSLET 311
A + +V +R FD + L ++ R T AV P I+ ++ + Y SL
Sbjct: 259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV--RNRYSGRSLRF 316
Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST-GRLSAG 370
A + + D ++AF +F V + Y TE AG+ T P + R T GR + G
Sbjct: 317 AAASGSRMRPDVVIAFMDQFGDV-IYNNYNATE--AGMIATATPADLRAAPDTAGRPAEG 373
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL--LPDGWMRTGDLCYI 428
E +I+D + +P G+ G + +R T GY TS + DG+M +GD+ Y+
Sbjct: 374 TEIRILDQD-FREVPTGEVGTIFVRNDTQFDGY------TSGSTKDFHDGFMASGDVGYL 426
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488
DE+G LF+V R ++I G V P E+E L +H +VA+AAVI DE+ GQ AFVV
Sbjct: 427 DENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVV 486
Query: 489 RQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
+P +S + + V ++ YK R + ++ +P+ A GKILR EL+
Sbjct: 487 LKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQ 535
|
Length = 537 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 1e-42
Identities = 148/530 (27%), Positives = 236/530 (44%), Gaps = 74/530 (13%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R ++ + R LA+ L ++ ++KND VL+ N+ + ++F++ G +++P N
Sbjct: 39 RFTWPQTYDRCCRLAASLISLN-ITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTR 97
Query: 129 NTESEISRQIQLSNPVIAFATSS-------VVHKL----AKLKHRTILIDSPEFDSMTMS 177
+ I+ ++ + P I F S V+H L + L I I +F S
Sbjct: 98 LDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSS 157
Query: 178 WNSKHE--LDRAKVCQSDVAAIM------------YSSGTTGRVKGVMLTHRNLTAAVAS 223
+E + R + S VA + Y+SGTT KGV+++HR + S
Sbjct: 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS 217
Query: 224 SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVT 283
+ P V L+T+P FH G F + AA T+V M+ + K +E VT
Sbjct: 218 AIIGWEMGTCP-VYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVT 276
Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ----- 338
H P + + KG S D S V G +P P LV+
Sbjct: 277 HMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSP-------------PPAALVKKVQRL 323
Query: 339 ------AYGLTESTAGVFRTVGPDECRRWGSTGRLS----AGL------EAKIVDPETGD 382
AYGLTE+T V DE R ++ G+ + + + ET +
Sbjct: 324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQE 383
Query: 383 SLP-PGKE-GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL 440
S+P GK GE+ I+G +IMKGY+ P+ TS GW+ TGD+ I DG + I DR
Sbjct: 384 SVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRS 442
Query: 441 KDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV----------RQ 490
KD+I G ++ E+E++L + +V + AV+ P G+ P AFVV R
Sbjct: 443 KDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRV 502
Query: 491 PHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
E +++E+ + + R+V F+ +PK+ GKIL+ +LR +A
Sbjct: 503 DKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIA 552
|
Length = 579 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 4e-42
Identities = 111/360 (30%), Positives = 178/360 (49%), Gaps = 25/360 (6%)
Query: 195 AAIMYSSGTTGRVKGVMLTHR-NLTAAVASSFASSPKRVSPAVMLFTMPYFHI--YGLFF 251
A + Y+SGTTG KGV+ +HR N+ A+ ++ + + ML +P FH +G+ F
Sbjct: 180 AGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAF 239
Query: 252 CFRAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
+A M T +VM + D + + ++ +VT A P + + + + +G L L
Sbjct: 240 ---SAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHL 296
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES----TAGV----FRTVGPDECRRW 361
+ V CG + + + I AF V + A+G+TE T F + D
Sbjct: 297 KMVVCGGSAMPRSMIKAFEDM--GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDV 354
Query: 362 GST-GRLSAGLEAKIVDPETGDSLP-PGKE-GELSIRGPTIMKGYVGEPEVTSATLLPDG 418
G G+E KI D G LP GK G L +RGP + Y V L DG
Sbjct: 355 LQKQGYPPFGVEMKITDDA-GKELPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDG 410
Query: 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEE 478
+ TGD+ ID G++ I DR KD+IK G ++ +LE+L + H +VA+AAVI +
Sbjct: 411 FFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPK 470
Query: 479 AGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
+ P+ V +P + EI++++ +++ + VAF++AIP +A GKIL+ LR+
Sbjct: 471 WDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALRE 530
|
Length = 542 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 3e-41
Identities = 137/505 (27%), Positives = 229/505 (45%), Gaps = 51/505 (10%)
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
++ SF E + A+ L L + D V+ E ++ + + G++ P
Sbjct: 40 VKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTI 99
Query: 128 VNTESEISRQIQLS-------NPVIAFATSSVVHKLAKLKHRTILIDSPE-------FDS 173
T +I ++Q S + +A A S+ + LK T L+ S F
Sbjct: 100 QLTAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSLK--TKLLVSEHSRDGWLNFKE 157
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR-V 232
+ +++H + K + AI ++SGTTG K M H + + + +
Sbjct: 158 LLKEASTEHTCVKTK--SQEPMAIYFTSGTTGFPK--MAEHSHSSLGLGLKVNGRYWLDL 213
Query: 233 SPAVMLFTMP-----YFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
+P+ +++ M I+ LF + A + + RFD K++L+ + ++ +T
Sbjct: 214 TPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHH-LPRFDPKVILQTLSKYPITTF-C 271
Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES-- 345
+ P V M Y SL G PL + + + ++ + L + YG TE+
Sbjct: 272 SAPTVYRMLVQQDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQ-TGLDLYEGYGQTETGL 330
Query: 346 TAGVFRT--VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-GPT---- 398
F+ + P GS G+ S + +I+D + G+ LPPG EG++ IR PT
Sbjct: 331 ICANFKGMKIKP------GSMGKASPPYDVQIID-DNGNVLPPGTEGDIGIRVKPTRPFC 383
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458
+ YV PE T+AT+ D ++ TGD +DEDG+ + V R D+I GY++ P E+E
Sbjct: 384 LFSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVES 442
Query: 459 LLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP-HSSLNE----AEIMEFVARQVSPYKK 513
L+ H V ++AV+ PD G++ AFVV P S + E+ E V +PYK
Sbjct: 443 ALIEHPAVVESAVVSSPDPIRGEVVKAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKY 502
Query: 514 IRRVAFINAIPKSAAGKILRMELRK 538
R+V F+ +PK+ GKI R ELR
Sbjct: 503 PRKVEFVQELPKTITGKIKRNELRD 527
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 3e-40
Identities = 148/535 (27%), Positives = 229/535 (42%), Gaps = 93/535 (17%)
Query: 48 RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107
+ L + D + ++ E +N A+ L+ + + K D F+
Sbjct: 60 KVALRYLDASRK--------EKYTYKELKELSNKFANVLKELG-VEKGDRVFIFMP---R 107
Query: 108 IPILYFSLLS---LGVIISPANPVNTESEISRQIQLSNPVIAFATSS-----VVHKLAKL 159
IP LYF+LL G I+ P E + +++ S + T + L L
Sbjct: 108 IPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSL 167
Query: 160 KHRTILIDSP-EFDSMTMSWNSK-----HELDRAKVCQSDVAAIMYSSGTTGRVKGV--- 210
KH +L+ E T+ +N+ E D + D A + Y+SG+TG+ KGV
Sbjct: 168 KH-VLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHV 226
Query: 211 ---MLTHRNLTAAVASSFASS--------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259
ML H T P V+ YG+F + A
Sbjct: 227 HNAMLQHY-QTGKYVLDLHEDDVYWCTADPGWVTGTS----------YGIFAPWLNGA-- 273
Query: 260 ETAVVMQ-RFDLKMMLKAVEEFRVTHAAV--TPPIVVAMSKGGSTD---GYDLSSLETVA 313
T V+ RF + + +E+++VT V T P + M G D YDLSSL +
Sbjct: 274 -TNVIDGGRFSPERWYRILEDYKVT---VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHIL 329
Query: 314 CGAAPLGKDTIMAFASKFPKVVL--VQAYGL--------TESTAGVFRTVGPDECRRWGS 363
PL P+VV ++ +GL TE T G+ P + GS
Sbjct: 330 SVGEPLN-----------PEVVRWGMKVFGLPIHDNWWMTE-TGGIMIANYPAMDIKPGS 377
Query: 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLPDGWMR 421
G+ G+EA IVD + G+ LPP + G L+I+ P++M+G PE + W
Sbjct: 378 MGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYV 435
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ 481
+GD Y+DEDG+ + R+ D+IK G +V P E+E L+ H VA+A VI PD G+
Sbjct: 436 SGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGE 495
Query: 482 MPMAFVVRQPHSSLNEA---EIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILR 533
+ AFV +P +E EI FV + + + R + F + +PK+ +GKI+R
Sbjct: 496 IIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMR 550
|
Length = 570 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 3e-40
Identities = 135/527 (25%), Positives = 221/527 (41%), Gaps = 46/527 (8%)
Query: 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98
S+ V+ L LP +DD L S+ E R + + A+ L+ ++
Sbjct: 2 SSAPTVAEL--LLPLAEDDDRGL--YFEDSFTSWREHIRGSAARAAALRARLDPTRPPHV 57
Query: 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK 158
VL N+ E +L + G++ NP + ++R I ++ + S+ L
Sbjct: 58 GVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDG 117
Query: 159 LKH--RTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
L R I +DSP + ++ + E D+ ++++SGT+G K V THR
Sbjct: 118 LDPGVRVINVDSPAWAD-ELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRK 176
Query: 217 LTAA---VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM-QRFDLKM 272
+ +A +A F P V +MP FH + + A ++ + ++F
Sbjct: 177 VASAGVMLAQRFGLGPDDVC----YVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASG 232
Query: 273 MLKAVEEFRVTHAA-VTPPIVVAMSKGGSTDGYDLSSLETVAC--GAAPLGKDTIMAFAS 329
L V + T+A V P+ ++ D D + L V GA I FA
Sbjct: 233 FLPDVRRYGATYANYVGKPLSYVLATPERPDDAD-NPLRIVYGNEGAPG----DIARFAR 287
Query: 330 KFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE 389
+F V+V +G TE + RT G+ G L G+ IVDP+TG PP ++
Sbjct: 288 RF-GCVVVDGFGSTEGGVAITRTPDTPP----GALGPLPPGV--AIVDPDTGTECPPAED 340
Query: 390 ------------GEL-SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFI 436
GEL + GP +GY +PE A + G +GDL Y D DG+ +
Sbjct: 341 ADGRLLNADEAIGELVNTAGPGGFEGYYNDPEAD-AERMRGGVYWSGDLAYRDADGYAYF 399
Query: 437 VDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLN 496
RL D ++ G + A +E +LL + + + AV PD G MA +V P + +
Sbjct: 400 AGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD 459
Query: 497 EAEIMEFVARQ--VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541
EF+A Q + P + V +P++A K+L+ +L V
Sbjct: 460 PDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGV 506
|
Length = 529 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 1e-38
Identities = 123/500 (24%), Positives = 215/500 (43%), Gaps = 30/500 (6%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
A I+ ++ L S+ E + L + L+ + + ++ + ++ PI + +
Sbjct: 20 GKTAFIDDISSL--SYGELEAQVRRLGAALRRLGVKREERVLLLM-LDGVDFPIAFLGAI 76
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSS-------VVHKLAKLKHRTILID-- 167
G++ N + T + + ++ S + F + + K L+HR ++
Sbjct: 77 RAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPE 136
Query: 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS 227
+ E + + A D A +YSSG+TG KGV+ TH N A +A
Sbjct: 137 AGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYW-TAELYAR 195
Query: 228 SPKRVSPAVMLFTMP-YFHIYGL----FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFR 281
+ + ++F+ F YGL F A T V+M +R + + +
Sbjct: 196 NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGA---TTVLMGERPTPDAVFDRLRRHQ 252
Query: 282 VTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341
T P + AM + D L L + + ++F V +V G
Sbjct: 253 PTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIG 311
Query: 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401
TE +F + P + R +G++G+ G ++V + G + G+ GEL I GP+
Sbjct: 312 STE-MLHIFLSNLPGDVR-YGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSAT 368
Query: 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL 461
Y T T W R+GD ++DG R D++K G V+P E+E L+
Sbjct: 369 MYWNNRAKTRDTFQ-GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALI 427
Query: 462 SHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEA---EIMEFVARQVSPYKKIRRVA 518
H V +AAV+ DE+ P AF+V +P ++ A E+ E V +++PYK R +
Sbjct: 428 QHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIV 487
Query: 519 FINAIPKSAAGKILRMELRK 538
F++ +PK+A GKI R +LR+
Sbjct: 488 FVDDLPKTATGKIQRFKLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 4e-38
Identities = 107/372 (28%), Positives = 163/372 (43%), Gaps = 33/372 (8%)
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFASSPKRVSPAVMLFTMPYF 244
R K+ D+ A MY+SGTTG KGV + L A A +A + ++
Sbjct: 83 RGKL-DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRD--------DDVFW 133
Query: 245 HI------YGLFFCFRAAALMETAVVMQR--FDLKMMLKAVEEFRVTHAAVTPPIVVAM- 295
+I YGL++ M V F + +E VT+ A +P +
Sbjct: 134 NIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLM 193
Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES--TAGVFRTV 353
+ G L + PL + + + V + YG TE+ G +
Sbjct: 194 AAGADAAARIKLKLRVASSAGEPLNPEVV-RWFQANLGVTIHDHYGQTETGMPVGNHHAL 252
Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR----GPTIMKGYVGEPEV 409
+ R GS G G ++D + G L G+ G+L+I GY +PE
Sbjct: 253 AHEV--RAGSMGLPLPGYRIAVLD-DDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEK 309
Query: 410 TSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA 469
T A L+ W TGDL DEDG+ + + R D+I GY++ P ++E LL H VA+A
Sbjct: 310 T-AELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEA 368
Query: 470 AVIPYPDEEAGQMPMAFVVRQPH---SSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKS 526
AV+ PD G++ AFVV + S E+ FV +++S + R V F+ A+PK+
Sbjct: 369 AVVGVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALPKT 428
Query: 527 AAGKILRMELRK 538
+GKI R LR+
Sbjct: 429 PSGKIQRFLLRQ 440
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 1e-37
Identities = 106/355 (29%), Positives = 179/355 (50%), Gaps = 25/355 (7%)
Query: 199 YSSGTTGRVKGVMLTHRNLTA-AVASSFASSPKRVSPAVMLFTMPYFHI--YGLFFCFRA 255
Y+SGTTG KG + +HR+ A ++ + + +L +P FH+ +GL + +
Sbjct: 183 YTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPY---S 239
Query: 256 AALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVA 313
A L +V+ D K + + +E RVT +A P + + + G S+L
Sbjct: 240 APLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTV 299
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTV-------GPDECRR-WGST 364
G + I F ++ V ++ A+G+TE S G + DE R+
Sbjct: 300 IGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQ 358
Query: 365 GRLSAGLEAKIVDPETGDSLP-PGKE-GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422
GR+ G++ KIV + G LP GK G+L +RGP ++ Y A+ L DGW T
Sbjct: 359 GRVIYGVDMKIVGDD-GRELPWDGKAFGDLQVRGPWVIDRYFR----GDASPLVDGWFPT 413
Query: 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQM 482
GD+ ID DGF+ I DR KD+IK G ++ ++E++ ++H VA+AA I + +
Sbjct: 414 GDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDER 473
Query: 483 PMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
P+ VV++P + + E++ F +V+ + V F++AIP +A GK+ +++LR
Sbjct: 474 PLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLR 528
|
Length = 539 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-37
Identities = 119/509 (23%), Positives = 206/509 (40%), Gaps = 65/509 (12%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D +AL+ ++++E R N LA L+ + D +L S E+ + ++L
Sbjct: 2 DAIALVYG--DRSLTYAELNERANRLARRLRA-RGVGPGDVVALLLERSPELVVAILAIL 58
Query: 117 SLG---VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
G V + PA P + + ++ + + + + +L + + D
Sbjct: 59 KAGAAYVPLDPAYPAERLAFMLEDSGARV-LLTDESLAPLARADQLPLVILEEELDAED- 116
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA-AVASSFASSPKRV 232
V D+A +MY+SG+TGR KGV + HR + +++ +
Sbjct: 117 --------AGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYI----AL 164
Query: 233 SPA-VMLFTMPY------FHIYGLFFCFRAAALMETA--VVMQR---FDLKMMLKAVEEF 280
P L P F I+G AL+ V++ + D + + + E
Sbjct: 165 DPDDRFLQLSPLSFDASTFEIWG--------ALLNGGRLVLIDKETLLDPDRLARLIAEQ 216
Query: 281 RVTHAAVTPPI---VVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
VT +T + +V D L+ L + G L + + P + L+
Sbjct: 217 GVTVLWLTAALFNQLVD------EDPEALAGLRQLLVGGDVLSPAHVRRVLAACPGLRLI 270
Query: 338 QAYGLTESTAGVFRTVGPDECRRWGST----GRLSAGLEAKIVDPETGDSLPPGKEGELS 393
YG TE+T F T + GR I+D E G +P G GEL
Sbjct: 271 NGYGPTENT--TFSTCHVITRLDEAADSIPIGRPIPNTTVYILD-EEGQPVPIGVPGELY 327
Query: 394 IRGPTIMKGYVGEPEVTSATLLPD----G--WMRTGDLCYIDEDGFLFIVDRLKDLIKYK 447
+ G + GY+ PE+T+ +PD G RTGDL DG + + R+ +K +
Sbjct: 328 VGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIR 387
Query: 448 GYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQ 507
G+++ E+E LL H V +AAV+ D + +A+VV +L+ AE+ +A +
Sbjct: 388 GFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVV--ARGALDAAELRAHLAER 445
Query: 508 VSPYKKIRRVAFINAIPKSAAGKILRMEL 536
+ Y ++ +P +A GK+ R L
Sbjct: 446 LPAYMVPAAFVVLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 3e-37
Identities = 112/371 (30%), Positives = 169/371 (45%), Gaps = 33/371 (8%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV-SPAVMLFTMPYFHIYGLFF 251
D A I++SSG+ G KGVML+H N+ + + S + + V+L ++P+FH +GL
Sbjct: 783 DTATIIFSSGSEGEPKGVMLSHHNILSNIEQ--ISDVFNLRNDDVILSSLPFFHSFGLTV 840
Query: 252 CFRAAAL--METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
L ++ D + K V + R T TP + + +SL
Sbjct: 841 TLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASL 900
Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST------------AGVFRTVGPDE 357
V GA L + AF KF + +++ YG TE++ A R G E
Sbjct: 901 RLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE 959
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS---ATL 414
GS G G+ +IVDPET + LPPG++G + I GP +MKGY+G+PE T+ +
Sbjct: 960 ----GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDI 1015
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELE---HLLLSHREVADAAV 471
GW TGD ++DEDGFL I DR K G V +E L EV AV
Sbjct: 1016 DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEV-VFAV 1074
Query: 472 IPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR-QVSPYKKIRRVAFINAIPKSAAGK 530
PDE+ G+ VV + + E+ + + K R + A+P +GK
Sbjct: 1075 TAVPDEKKGEK---LVVLHTCGAEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGK 1131
Query: 531 ILRMELRKVAV 541
+ L+++A+
Sbjct: 1132 LDLKGLKELAL 1142
|
Length = 1146 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 3e-37
Identities = 149/528 (28%), Positives = 236/528 (44%), Gaps = 67/528 (12%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
D +A+I + S+ E + +++LA L+ + DTA V N E I +F
Sbjct: 35 AASDAIAVICG--ERQFSYRELNQASDNLACSLRR-QGIKPGDTALVQLGNVAEFYITFF 91
Query: 114 SLLSLGVIISPANPVNT-----ESEIS---RQIQLSNP--VIA------FATSSVVHKLA 157
+LL LGV PVN SE++ QI+ P +IA F+ ++ L
Sbjct: 92 ALLKLGVA-----PVNALFSHQRSELNAYASQIE---PALLIADRQHALFSDDDFLNTLV 143
Query: 158 K----LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD-VAAIMYSSGTTGRVKGVML 212
L+ +L D E S+ + N E A +D VA S G+TG K +
Sbjct: 144 AEHSSLRVVLLLNDDGEH-SLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPR 202
Query: 213 THRNLTAAVASS-----FASSPKRVS--PAVMLFTMPYFHIYGLFFCFRAAALMETAVVM 265
TH + +V S F + + PA + M G+F L
Sbjct: 203 THNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSAT 262
Query: 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVV----AMSKGGSTDGYDLSSLETVACGAAPLGK 321
F L +E+ +V A+ PP V A+++GGS L+SL+ + G A L +
Sbjct: 263 LCFPL------IEKHQVNVTALVPPAVSLWLQAIAEGGS--RAQLASLKLLQVGGARLSE 314
Query: 322 DTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVD 377
A + P + L Q +G+ E R DE R + + GR +S E + D
Sbjct: 315 ----TLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDE-RIFTTQGRPMSPDDEVWVAD 369
Query: 378 PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIV 437
G+ LP G+ G L RGP +GY P+ ++ +G+ +GDL ID DG++ +V
Sbjct: 370 -ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVV 428
Query: 438 DRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAF-VVRQPHSSLN 496
R KD I G ++A E+E+LLL H V AA++ DE G+ AF VV++P L
Sbjct: 429 GREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP---LK 485
Query: 497 EAEIMEFVARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543
++ F+ Q ++ +K RV ++++P +A GK+ + +LR+
Sbjct: 486 AVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 533
|
Length = 536 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 9e-37
Identities = 134/523 (25%), Positives = 212/523 (40%), Gaps = 69/523 (13%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D VAL+ R++++E R N LA YL L D + + N IE
Sbjct: 18 DRVALV--CGDRRLTYAELEERANRLAHYLIAQG-LGPGDHVGIYARNRIEYVEAMLGAF 74
Query: 117 SLGVIISPANPVN-----TESEISRQIQLSNPVIAFATSS-------VVHKLAKLKHRTI 164
+ PVN E E+ + S+ V V+ +L KL+ +
Sbjct: 75 KARAV-----PVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRT-LV 128
Query: 165 LID---SPEFDSMTMSWNS-----KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
+++ + + + E D + D+ ++Y+ GTTG KGVM +
Sbjct: 129 VVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLY-LLYTGGTTGMPKGVMWRQED 187
Query: 217 L--TAAVASSFASSP---------KRVS---PAVMLFTMPYFHIYGLFFCFRAAALMETA 262
+ FA+ KR + P H G + F AA
Sbjct: 188 IFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAF-AALFSGQT 246
Query: 263 VVM---QRFDLKMMLKAVEEFRVTHAAVT-----PPIVVAMSKGGSTDGYDLSSLETVAC 314
VV+ RFD + + +E +V + P++ A+ G YDLSSL +A
Sbjct: 247 VVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARG---PYDLSSLFAIAS 303
Query: 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG--RLSAGLE 372
G A A P VVL + G +E+ G TV TG R + G
Sbjct: 304 GGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGA----VHTGGPRFTIGPR 359
Query: 373 AKIVDPETGDSLPPG--KEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCY 427
++D + G+ + PG + G ++ RG I GY +PE T+ T DG + GD
Sbjct: 360 TVVLDED-GNPVEPGSGEIGWIARRGH-IPLGYYKDPEKTAETFPTIDGVRYAIPGDRAR 417
Query: 428 IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFV 487
++ DG + ++ R I G +V P E+E L +H +VADA V+ PDE GQ +A V
Sbjct: 418 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV 477
Query: 488 VRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGK 530
+ + + AE+ ++ YK R + F++ + +S AGK
Sbjct: 478 QLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGK 520
|
Length = 533 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-36
Identities = 112/360 (31%), Positives = 181/360 (50%), Gaps = 32/360 (8%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---SPKRVSPAVMLFTMPYFHIYGL 249
D A IM++ GTTG K V TH N+ ++V + SP+ + AVM P +H +GL
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVM----PLYHGHGL 232
Query: 250 FFCFRAAALMET-----AVVMQ---RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
AAL+ T AV++ RF ++ T P I + + +T
Sbjct: 233 I-----AALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAAT 287
Query: 302 D--GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT----VGP 355
+ G ++L + +APL +T A ++F V V A+G+TE+T V T +G
Sbjct: 288 EPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPV-VCAFGMTEATHQVTTTQIEGIGQ 346
Query: 356 DECRRW--GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSAT 413
E G GR S G + +IV + G LP G GE+ +RG T+++GY+G+P +T+A
Sbjct: 347 TENPVVSTGLVGR-STGAQIRIVGSD-GLPLPAGAVGEVWLRGTTVVRGYLGDPTITAAN 404
Query: 414 LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473
DGW+RTGDL + G L I R+K+LI G +++P +E +L SH V +AAV
Sbjct: 405 F-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFG 463
Query: 474 YPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILR 533
PD+ G+ A +V + + E+++F +++ ++ + +P +A G + R
Sbjct: 464 VPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDR 523
|
Length = 534 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 6e-36
Identities = 108/384 (28%), Positives = 172/384 (44%), Gaps = 61/384 (15%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-----FF 251
I+Y+SGTTG+ KGV+ AVA ++ +IYG+ F+
Sbjct: 225 ILYTSGTTGKPKGVVRD--TGGYAVALKWSMR----------------NIYGIKPGDVFW 266
Query: 252 CFRA------------AALME--TAVVMQ-----RFDLKMMLKAVEEFRVTHAAVTPPIV 292
L+ T V+ + D + +EE+ V P +
Sbjct: 267 AASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAI 326
Query: 293 VAMSKGGSTDG-----YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
A+ + DG YDLSSL + L T+ + K V ++ + TE+
Sbjct: 327 RAI-RKQDPDGEYIKKYDLSSLRALFLAGERLDSPTL-EWIEKTLGVPVIDHWWQTETGW 384
Query: 348 GVFRTVGPDECR--RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT---IMKG 402
+ E + GS G+ G + +++D ETG+ L PG+ G + I+ P +
Sbjct: 385 PITANCVGLELLPIKPGSPGKPVPGYDVQVLD-ETGEELGPGELGNIVIKLPLPPGCLLT 443
Query: 403 YVGEPEVTSATLLPD--GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLL 460
G+ E L G+ TGD Y DEDG+LF++ R D+I G++++ E+E +
Sbjct: 444 LWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESV 503
Query: 461 LSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLN----EAEIMEFVARQVSPYKKIRR 516
L H +VA+ AV+ DE GQ+P+ VV + ++ E EI+ V Q+ P R
Sbjct: 504 LKHPDVAECAVVGVRDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRN 563
Query: 517 VAFINAIPKSAAGKILRMELRKVA 540
V F+ +PK+ +GKILR LRK+A
Sbjct: 564 VVFVKRLPKTRSGKILRRTLRKIA 587
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 8e-36
Identities = 95/363 (26%), Positives = 160/363 (44%), Gaps = 41/363 (11%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAA---------VASSFASSPKRVS----PAVMLFTMPY 243
++Y+ GTTG KGVM ++ + K+V+ L P
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67
Query: 244 FHIYGLFFCFRAAALMETAVVM---QRFDLKMMLKAVEEFRVTHAAVT-----PPIVVAM 295
H G + +A VV+ +FD + + VE+ RV + P++ A+
Sbjct: 68 MHGAGQWLAL-SALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLLEAL 126
Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG---VFRT 352
G YDLSSL ++ A + P + LV A G +E+ G V R
Sbjct: 127 EAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRA 183
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG--KEGELSIRGPTIMKGYVGEPEVT 410
G TG+ G + ++D + + +PPG + G ++ G + GY +PE T
Sbjct: 184 GGASA------TGKFELGPDTVVLDEDGSE-VPPGSGEVGWIARGGR-VPLGYYKDPEKT 235
Query: 411 SATLLP-DG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467
+ T DG + GD ++ DG + ++ R I G +V P E+E L +H +VA
Sbjct: 236 AKTFREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVA 295
Query: 468 DAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSA 527
DA V+ PDE GQ +A V + + L+ AE+ + + ++ YK R + ++ +P++
Sbjct: 296 DALVVGVPDERWGQRVVAVVQLRAGAGLDLAELRDHCRQHLAGYKLPRAIVVVDTVPRAP 355
Query: 528 AGK 530
+GK
Sbjct: 356 SGK 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 2e-35
Identities = 109/451 (24%), Positives = 164/451 (36%), Gaps = 114/451 (25%)
Query: 157 AKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
L + ++ D S+ D+A I +SSG+TG KGV+LTH+N
Sbjct: 87 NILNNPFLITDRDSLLSLP----------------DDIAFIQFSSGSTGEPKGVILTHKN 130
Query: 217 LTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL----FFCFRAAA---LMETAVVMQRFD 269
L + + + + S V L MP H GL LM T + ++R
Sbjct: 131 LLTNI-EAIIEAAEITSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRRPL 189
Query: 270 LKMMLKAVEEFRVT--------------HAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315
L L + R T H I +DLSS+ + G
Sbjct: 190 L--WLDKASQHRATILSSPNFGYKYLLKHFKTEKII-----------DWDLSSVRLIFNG 236
Query: 316 AAPLGKDTIMAF-----ASKFPKVVLVQAYGLTESTAGV--------FRTV--------- 353
A P+ D F + YGL E+T V F+TV
Sbjct: 237 AEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKV 296
Query: 354 ---------GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV 404
+ + G G E +IVD + G+ LP G + I+G + GY
Sbjct: 297 GVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYY 355
Query: 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHR 464
PE T ++ PDGW++TGDL ++ +G L I R KD+I G P ++E +
Sbjct: 356 NNPEATKKSITPDGWLKTGDLGFL-RNGRLVITGRAKDIIIVNGQNYYPHDIERVA---E 411
Query: 465 EVADA-----AVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRR--- 516
+V A DE+ + V S + +F KI+R
Sbjct: 412 QVEGIKLGRVAACGVYDEKEQSEEVVIFVEYRQS------LDDF----TPLALKIKRHVN 461
Query: 517 ---------VAFINAIPKSAAGKILRMELRK 538
V + +IPK+ +GKI R +L +
Sbjct: 462 KKMGLNIDHVIPVRSIPKTTSGKIQRYKLAQ 492
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 107/476 (22%), Positives = 201/476 (42%), Gaps = 26/476 (5%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+++ ++ +A++L + SKN T +L N IE L+ G P +
Sbjct: 26 VLTYKDWFESVCKVANWLN--EKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIK 83
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
+ E+ ++ +SN + ++ L + R I ID + M +
Sbjct: 84 WKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID----EWKRMIEKYLPTYAPIE 139
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRN----LTAAVASSFASSPKRVSPAVMLFTMPYF 244
Q+ + ++SG+TG+ K + ++ V V A L
Sbjct: 140 NVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLV----- 194
Query: 245 HIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
H L+ + +T +M++F +L +E ++ P ++ ++ K
Sbjct: 195 HSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRV--- 251
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
+ + + A + + FP L + YG +E + V V + RR S
Sbjct: 252 -IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASE-LSFVTALVDEESERRPNSV 309
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424
GR ++ +I + E G+ + G+ G + ++ P GY+ V + L DGWM D
Sbjct: 310 GRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIG-GVLARELNADGWMTVRD 367
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484
+ Y DE+GF++IV R K++I + G + P E+E +L H V + VI PD G+ P+
Sbjct: 368 VGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPV 427
Query: 485 AFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
A + S + ++ F +++S +K + F++ IP + +GKI RME +
Sbjct: 428 AII----KGSATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWI 479
|
Length = 487 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 3e-35
Identities = 113/409 (27%), Positives = 165/409 (40%), Gaps = 84/409 (20%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPYFHIYGL 249
D A ++ +SG+TG K V+LTHRN+ A A + +P VS L MP H+ G+
Sbjct: 168 DPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVS----LNWMPLDHVGGI 223
Query: 250 FFC-FRAAALM------ETAVVMQR----FDLKMMLKAVEEFRVTHAAVT--PPIVVAM- 295
R L T ++ DL ++ +RVT +T P A+
Sbjct: 224 VMLHLRDVYLGCQQIHVPTDYILADPLRWLDL------IDRYRVT---ITWAPNFAFALL 274
Query: 296 ---SKGGSTDGYDLSSLETVACGAAPLGKDTIMAF-----ASKFPKVVLVQAYGLTESTA 347
+ +DLSSL + + TI F P + A+G++E+ +
Sbjct: 275 NDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCS 334
Query: 348 GVFRTVGPDECRRWG-------------------------STGRLSAGLEAKIVDPETGD 382
GV + G G GR G+ +IVD E G
Sbjct: 335 GVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGA 393
Query: 383 SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKD 442
LP G+ G L +RGPT+ GY PE + DGW RTGDL ++ DG L I R KD
Sbjct: 394 LLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DGRLTITGREKD 452
Query: 443 LIKYKGYQVAPAELEHLLLSHREVAD--AAVIPYPDEEAG--QMPMAFVVRQPH----SS 494
+I G E+E + V A D +G ++ + FV R ++
Sbjct: 453 MIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTDELAVFFVPRYDLDDRLAA 512
Query: 495 LNEAEIMEFVARQVSPYKKIRRVAFI-----NAIPKSAAGKILRMELRK 538
L A I VAR++ A++ PK++ GKI R +LRK
Sbjct: 513 LLRA-IRTHVARKIG-----IAPAYVIPLAKEDFPKTSLGKIQRAQLRK 555
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 1e-34
Identities = 122/473 (25%), Positives = 187/473 (39%), Gaps = 64/473 (13%)
Query: 64 SVTGLRV-SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVII 122
+++G R + EF SLA+ L + L D + + NS ++ G I+
Sbjct: 26 TISGNRRRTGHEFVDGVLSLAAGLLRLG-LRNGDVVAIAALNSDLYLEWLLAVACAGGIV 84
Query: 123 SPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTI-------LIDSP------ 169
+P N + E + L PV+ + +L++ + ++SP
Sbjct: 85 APLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI 144
Query: 170 ---EFDSMTMSWN---SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT----A 219
F + M ELD A D I ++SGTTGR KGV ++H L A
Sbjct: 145 FLNSFLTTEMLKQRALGTTELDYAWA-PDDAVLICFTSGTTGRPKGVTISHSALIVQSLA 203
Query: 220 AVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETA--VVMQRFDLKMMLKAV 277
+A V L T P HI GL A LM A V++ +FD K L+A+
Sbjct: 204 KIAIVGYGEDD-----VYLHTAPLCHIGGLSSAL--AMLMVGACHVLLPKFDAKAALQAI 256
Query: 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLS--SLETVACGAAPLGKDTIMAFASKFPKVV 335
++ VT P ++ + S+ + G L + FP
Sbjct: 257 KQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK 316
Query: 336 LVQAYGLTES------------TAGVFRTVGPDECRRWGSTGRLSAG---------LEAK 374
L AYG+TE+ T + + S+ G +E K
Sbjct: 317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELK 376
Query: 375 IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434
I E + G + RGP +M GY G+ T++ L DGW+ TGD+ +ID+ G L
Sbjct: 377 IGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNL 430
Query: 435 FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFV 487
+++ R D IK G V P E+E +L H VA V+ PD +M +A V
Sbjct: 431 WLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACV 483
|
Length = 563 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 98/366 (26%), Positives = 159/366 (43%), Gaps = 37/366 (10%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY---FHIYG 248
D A ++Y+SG+TG+ KGV++THRN+ + + A R V+ F I
Sbjct: 99 DDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQF-ASIAFDVSILE 157
Query: 249 LFFCFRAAALMETAVVMQRFDLKMML-KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
+F A T V+ L + + RVT A +TP S D D+
Sbjct: 158 IFTTLLAGG---TLVIPPEELRLEDLAEFLNRLRVTVAHLTP------SLLALLDPEDVP 208
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST--AGVFRTVGPDECRRWGSTG 365
SL T+ G + + ++ L+ YG TE+T A R + P + + G
Sbjct: 209 SLRTLILGGEACPQALVDRWS---KPRRLLNTYGPTEATVTATASR-LTPGKPV---NIG 261
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM----- 420
R ++DP+ +P G GEL I GP + +GY+ PE+T+ +PD +
Sbjct: 262 RPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPG 321
Query: 421 ----RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPD 476
RTGDL EDG L + R D +K +G ++ E+E +L + V AAV+ D
Sbjct: 322 GRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLD 381
Query: 477 EEAGQMPMAFV-VRQPHSSLNEAEIMEFVARQVS---PYKKI-RRVAFINAIPKSAAGKI 531
+ G+ +AF+ V + + + P + ++ +P +A+GK+
Sbjct: 382 DPGGKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSVYVPLDELPLTASGKV 441
Query: 532 LRMELR 537
R LR
Sbjct: 442 DRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-34
Identities = 144/500 (28%), Positives = 228/500 (45%), Gaps = 29/500 (5%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D A+I + TG +VS+ + + +LA L + L D +LS NS E ++ ++ L
Sbjct: 12 DRPAVIVAETGEQVSYRQLDDDSAALARVLYDAG-LRTGDVVALLSDNSPEALVVLWAAL 70
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS--PEFDSM 174
G+ I+ N T E + S + A++++ AK+ L S E D
Sbjct: 71 RSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGF 130
Query: 175 TMSWNSKHELDRAKVCQSDVAAIM-YSSGTTGRVKGVM--LTHRNLTA------AVASSF 225
S+ + ++ + A+M YSSGTTG KG+ L R++ A A+A +F
Sbjct: 131 G-SFEAALAGAGPRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAF 189
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
+ + P +H L +C AL T V+ +RFD + L VE +R+T
Sbjct: 190 YDI---SESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVT 246
Query: 286 AVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
+ P + V + K + YD+SSL V AAP D A +V + Y T
Sbjct: 247 QMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVY-EYYSST 305
Query: 344 ESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
E+ F PD GS GR G + I D + G+ LP G+ G + + Y
Sbjct: 306 EAHGMTF-IDSPDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRY 362
Query: 404 VGEPEVTSATLLPDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL 461
+ +PE T+A P W GDL +DEDG+L++ DR +I G + P E E+ L
Sbjct: 363 LNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALT 422
Query: 462 SHREVADAAVIPYPDEEAGQMPMAFVVR----QPHSSLNEAEIMEFVARQVSPYKKIRRV 517
H V D AVI PD E G+ A + + L E++++ +++ YK R V
Sbjct: 423 MHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELAR-ELIDYTRSRIAHYKAPRSV 481
Query: 518 AFINAIPKSAAGKILRMELR 537
F++ +P++ GK+++ LR
Sbjct: 482 EFVDELPRTPTGKLVKGLLR 501
|
Length = 501 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-34
Identities = 101/348 (29%), Positives = 152/348 (43%), Gaps = 67/348 (19%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
D+A I+Y+SGTTG+ KGVML+ A A +L +P HI
Sbjct: 137 EDLATIVYTSGTTGQPKGVMLSFGAFAFA-AQGTIEIIGLTPNDRLLSYLPLAHIA---- 191
Query: 252 CFRAAALMETAVV-----------MQRF--DLKM----MLKAV----EEFRV-THAAVTP 289
++E + + F DL+ + +V +F+ A + P
Sbjct: 192 ---ERVIVEGGSLYSGAEVFFVESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPP 248
Query: 290 ---------PIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340
PI+ ++ K G L GAAP+ ++A+ K + + + Y
Sbjct: 249 EKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPA-LIAWYRKL-GLPICEGY 306
Query: 341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
G+TE+ A + T+ RR G+ G+ G+E KI + +GE+ IR P +M
Sbjct: 307 GMTENFA--YSTLNYPGDRRIGTVGKPIPGVELKISE-----------DGEILIRSPGLM 353
Query: 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKY-KGYQVAPAELEHL 459
GY +PE T+ DGW+ TGD IDEDGFL I R+K+L K KG VAPA +E+L
Sbjct: 354 SGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENL 413
Query: 460 LLSHREVADAAVIPYPDEEAGQ-MPMAFVVRQPHSSLNEAEIMEFVAR 506
L ++ V V+ +G P+A VV L+EA
Sbjct: 414 LSANPHVEQVCVV-----GSGLPQPVALVV------LSEAADPLEREE 450
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-34
Identities = 107/375 (28%), Positives = 169/375 (45%), Gaps = 40/375 (10%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHR----NLTAAVASSFASSPKRVS--PAVMLFTMPYF 244
+ D A I+Y+SGTTG+ KG + TH + F P M + M +
Sbjct: 99 KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPW 158
Query: 245 HIYG--LF----FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV-VAMSK 297
+ G L + A + R VE +VTH ++P ++ +
Sbjct: 159 LVLGGLLLGATIVLYEGAPDYPDPDRLWRI--------VERHKVTHLGLSPTLIRALRAH 210
Query: 298 GGST-DGYDLSSLETVACGAAPLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTVG 354
G + +G+DLSSL + P ++ + + ++ G TE + G+ +G
Sbjct: 211 GDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTEISGGI---LG 267
Query: 355 PDECR--RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI-M-KGYVGEPEVT 410
R + S S G++A +VD + G + GEL +R P M +G+ +PE
Sbjct: 268 NVPIRPIKPCSFNGPSPGMDADVVDED-GRPVRGE-VGELVVRAPWPGMTRGFWRDPERY 325
Query: 411 SATL---LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467
T P W GD +DEDG+ +I+ R D IK G +V PAE+E +L SH VA
Sbjct: 326 LETYWSRFPGVW-VHGDWALVDEDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVA 384
Query: 468 DAAVIPYPDEEAGQMPMAFVVRQP---HSSLNEAEIMEFVARQVSPYKKIRRVAFINAIP 524
+AA I PD G+ + FVV +P S+ EAE+ + V + + R V F++ +P
Sbjct: 385 EAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDALGKPFRPREVHFVSDLP 444
Query: 525 KSAAGKILRMELRKV 539
K+ GKI+R +R
Sbjct: 445 KTRNGKIMRRVIRAA 459
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 3e-33
Identities = 115/371 (30%), Positives = 173/371 (46%), Gaps = 39/371 (10%)
Query: 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRA 255
A+ Y+SGTT KGV+L HR +A S A AV L+T+P FH G F +
Sbjct: 199 ALGYTSGTTASPKGVVLHHRG-AYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTL 257
Query: 256 AALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY-DLSSLETV-A 313
AAL T + +++ K + A+ + VTH P ++ + ++ L + V
Sbjct: 258 AALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMT 317
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWG---------ST 364
GAAP + FA + YGL+E T GP W
Sbjct: 318 AGAAP---PPSVLFAMSEKGFRVTHTYGLSE-------TYGPSTVCAWKPEWDSLPPEEQ 367
Query: 365 GRLSA-------GLEA-KIVDPETGDSLPP-GKE-GELSIRGPTIMKGYVGEPEVTSATL 414
RL+A GLE +VD +T +P GK GE+ +RG +MKGY+ P+
Sbjct: 368 ARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF 427
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474
+GW +GDL DG++ I DR KD+I G ++ E+E+++ +H V +A+V+
Sbjct: 428 -ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVAR 486
Query: 475 PDEEAGQMPMAFVVRQPHSSLN-----EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAG 529
PDE G+ P AFV +P + +IM+F ++ Y + V F +PK+A G
Sbjct: 487 PDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATG 545
Query: 530 KILRMELRKVA 540
KI + LR A
Sbjct: 546 KIQKHVLRAKA 556
|
Length = 567 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 5e-33
Identities = 92/376 (24%), Positives = 155/376 (41%), Gaps = 63/376 (16%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF-TMPYFHIYGLFF 251
D+A ++Y+SG+TG+ KGV ++HR L + S A P + +L T F I
Sbjct: 94 DLAYVIYTSGSTGKPKGVEVSHRALVNFL-LSMARRPGLGASDRLLAVTTISFDI----- 147
Query: 252 CFRAAALME---------TAVVMQRFDLK---MMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
+++E T V+ ++ + + + + R+T TP A +
Sbjct: 148 -----SVLELLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATP----ATWRML 198
Query: 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR 359
G+ T CG L +D S L YG TE+T
Sbjct: 199 LAAGWRGRESLTALCGGEALPRDLAERLLST--GAELWNMYGPTETTI------------ 244
Query: 360 RWGSTGRLSAGLEAK------------IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEP 407
W + R++A ++D + +PPG GEL I G + +GY+G P
Sbjct: 245 -WSTCARVTAADGPVTIGRPIANTQVYVLDED-LQPVPPGVPGELYIGGDGVARGYLGRP 302
Query: 408 EVTSATLLPDG-------WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLL 460
E+T+ +PD RTGDL DG L + R D +K +G+++ E+E L
Sbjct: 303 ELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAAL 362
Query: 461 LSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFI 520
+H VADA V+ + Q +A+VV + ++ + + + + Y +
Sbjct: 363 RAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAAPDAEALRAALRATLPAYMVPAAFVQL 422
Query: 521 NAIPKSAAGKILRMEL 536
+ +P + GK+ R L
Sbjct: 423 DELPLTPNGKVDRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 3e-32
Identities = 95/357 (26%), Positives = 156/357 (43%), Gaps = 26/357 (7%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVM-----LFTMPYFHIY 247
D+A ++Y+SG+TGR KGV + HRN A + + A V+ F + F I+
Sbjct: 106 DLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAVFSAEELAGVLAATSICFDLSVFEIF 165
Query: 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
L + + DL A E VT P + + + S
Sbjct: 166 VPLSTGGRVVLADN--ALALPDLP----AKAE--VTLINTVPSAARELLRHDALP----S 213
Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL 367
S+ TV PL ++ + + + YG +E T R S GR
Sbjct: 214 SVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGASRTPSIGRP 273
Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM------- 420
AG +A ++D +P G GEL I G + +GY+G PE+T+ LP+ +
Sbjct: 274 LAGTQAYVLD-AHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERL 332
Query: 421 -RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEA 479
RTGDL DG L + R+ D +K +G+++ E+E L S VA+A V+ D
Sbjct: 333 YRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAEAVVVAIGDAAG 392
Query: 480 GQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
+ +A++V P ++++ ++ +A ++ Y R ++A+P + GKI R L
Sbjct: 393 DRQLVAYIVADPGAAIDIEDLRARLATRLPAYMVPSRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-32
Identities = 118/498 (23%), Positives = 197/498 (39%), Gaps = 41/498 (8%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D A+I+ +++ E RR N++A+ L+ ++ D V+ E + +L
Sbjct: 2 DATAVIDG--AGTLTYGELARRANAIAAALRAA-GVAPGDLVAVVMPKGWEQIVAVLGIL 58
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
G P +P + + + + + D+ +S
Sbjct: 59 LAGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPEEAPDLLVVADDAAAAESP-- 116
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVS 233
+V D+A ++++SG+TG KGVM+THR N V F P
Sbjct: 117 ------APPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRV 170
Query: 234 PAV--MLFTMPYFHIYGLFFCFRAAALMETAVVM----QRFDLKMMLKAVEEFRVTHAAV 287
A+ + F + + I+G A A A+V+ +R D + V+ VT
Sbjct: 171 LALSALHFDLSVYDIFGAL---SAGA----ALVLPDEARRRDPDHWAELVQRHGVTVWNS 223
Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST- 346
P ++ + L SL V + D + P LV G TE++
Sbjct: 224 VPALMDMLLTYAEDAARLLPSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASI 283
Query: 347 -AGVFRTVGPDECRRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
+ + D W S G+ + ++D E G P GEL I G + GY
Sbjct: 284 WSIYYPIDDVDP--DWRSIPYGKPLPNQKFYVLD-EDGRDCPDWVPGELYIGGVGVALGY 340
Query: 404 VGEPEVTSATLL--PDG--WMRTGDL-CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458
G+PE+T+ + G RTGDL Y DG + + R +K +GY+V E+E
Sbjct: 341 WGDPELTAERFITHRTGERLYRTGDLGRYRP-DGTIEFLGRADHQVKIRGYRVELGEIEA 399
Query: 459 LLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVA 518
L H V A V+ D A + AFVV + ++++ A + +A + Y R
Sbjct: 400 ALARHPGVQRAVVVVVGDGGAKAL-AAFVVAEDGAAVDAAVLRAALAELLPAYMVPSRFV 458
Query: 519 FINAIPKSAAGKILRMEL 536
++A+P +A GK+ R L
Sbjct: 459 VLDALPLTANGKVDRKAL 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 6e-32
Identities = 109/504 (21%), Positives = 175/504 (34%), Gaps = 97/504 (19%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
R+S++EF N A L+ + + K D +L N E + + +L LG + + N
Sbjct: 1 DRRLSYAEFNAWANRYAHALRAL-GVKKGDVVALLMENRPEYLLAWLALAKLGAVAALIN 59
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
++ I +S+
Sbjct: 60 TTQRGEVLAHCINVSD-------------------------------------------- 75
Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHI 246
A+ D A +Y+SGTTG K +++HR A + F V+ +P +H
Sbjct: 76 ARAVIVDPAFYIYTSGTTGLPKAAIMSHRRWLRA-GAVFGGLGLLKPDDVLYLCLPLYHS 134
Query: 247 YGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
L + +A ++ ++R F V + T V G Y
Sbjct: 135 NALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAF-----QYV-----GELCRYL 184
Query: 306 LSSLE---------TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
L+ E G L D F +F +V+ YG TE G
Sbjct: 185 LNQPEKPDDRDHPLRKIIGNG-LRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKP 243
Query: 357 ECRRWGSTGRL-SAGLEAKIVDPETGDSL----------PPGKEGEL--SIRGPTIMKGY 403
G+ GRL A + D ET + + PPG+ G L I GY
Sbjct: 244 -----GAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGY 298
Query: 404 VGEPEVTSATLLP-----DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458
+ L D + TGDL D G+ + VDRL D ++KG V+ E+E
Sbjct: 299 TDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEE 358
Query: 459 LLLSHREVADAAV----IPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKI 514
+L H V +A V +P + AG MA + P ++ + + Q+ Y +
Sbjct: 359 VLAKHPGVEEANVYGVEVPGTEGRAG---MAALTLAPGAAFDPQAFAAHLDEQLPAYARP 415
Query: 515 RRVAFINAIPKSAAGKILRMELRK 538
+ A+ + K + +LRK
Sbjct: 416 LFLRVQAAMETTGTFKYQKTDLRK 439
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 9e-32
Identities = 117/439 (26%), Positives = 180/439 (41%), Gaps = 112/439 (25%)
Query: 176 MSWNSKHELD----RAKVCQSDVAA----------IMYSSGTTGRVKGVMLTHRNLTAAV 221
M+ + ++D RA+ + V I+Y+SGTTG+ KGV R+ T
Sbjct: 203 MARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGV---QRD-TGGY 258
Query: 222 ASSFASSPKRVSPAVMLFTMPYFHIYG-----LFFC-------------FRAAALMETAV 263
A + A+S I+G FFC A L A
Sbjct: 259 AVALATSMD--------------TIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMAT 304
Query: 264 VMQ-----RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD---GYDLSSLETVACG 315
+M R D + + VE+++V + P + + K +DLSSL +
Sbjct: 305 IMYEGLPTRPDAGIWWRIVEKYKVNRM-FSAPTAIRVLKKQDPALLRKHDLSSLRALFLA 363
Query: 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTES---TAGVFRTVGPDECRRWGSTGRLSAGLE 372
PL + T ++ S+ V ++ Y TE+ + R V D R GS G G
Sbjct: 364 GEPLDEPT-ASWISEALGVPVIDNYWQTETGWPILAIARGVE-DRPTRLGSPGVPMYGYN 421
Query: 373 AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT--GD------ 424
K+++ TG+ P ++G L I GP LP G M+T GD
Sbjct: 422 VKLLNEVTGEPCGPNEKGVLVIEGP-----------------LPPGCMQTVWGDDDRFVK 464
Query: 425 --------LCY-------IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA 469
Y D DG+ FI+ R D+I G+++ E+E + SH VA+
Sbjct: 465 TYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEV 524
Query: 470 AVIPYPDEEAGQMPMAFVVRQPHSSLN--------EAEIMEFVARQVSPYKKIRRVAFIN 521
AV+ D GQ+ +AFVV + SL E EIM V Q+ + RV F++
Sbjct: 525 AVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVS 584
Query: 522 AIPKSAAGKILRMELRKVA 540
A+PK+ +GK+LR ++ +A
Sbjct: 585 ALPKTRSGKLLRRAIQAIA 603
|
Length = 629 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-31
Identities = 89/415 (21%), Positives = 158/415 (38%), Gaps = 23/415 (5%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D VAL+ L +++E R N LA L + + +T +L+ S+E+ + ++L
Sbjct: 242 DAVALVRGGQQL--TYAELDARANRLARLLIS-LGVGPGETVAILADRSLELVVALLAVL 298
Query: 117 SLG---VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
G V + P P ++ ++ S P + + + L + +D
Sbjct: 299 KAGAAYVPLDPLYPAER---LAYILEDSRPTLLLTQAHLRVDDVGL--PGLALDDALS-- 351
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233
+ + +A I+Y+SG+TG+ KGV + HR L + + A
Sbjct: 352 ----EIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDAD 407
Query: 234 PAVMLFTMPYF--HIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI 291
V+ F ++ +F A + A + + D +L+ +E +T + P +
Sbjct: 408 DRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLL 467
Query: 292 VVAMSKGG--STDGYDLSSLETVACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAG 348
+ + L + G L + L+ YG TE+T
Sbjct: 468 LRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLD 527
Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
E GR A + I+D + LP G GEL I G + GY+ P+
Sbjct: 528 APSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPD 586
Query: 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH 463
+T+ + RTGDL DG L + R +K +G+++ E+E L
Sbjct: 587 LTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQ 641
|
Length = 642 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 111/485 (22%), Positives = 191/485 (39%), Gaps = 32/485 (6%)
Query: 78 RTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137
R L L+ + + D L N YF++ +G ++ ANP + EI+
Sbjct: 33 RARRLMGGLRALG-VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYI 91
Query: 138 IQLSNPVIAFATSSVVHKLAK-LKHRTILIDSP-------EFDSMTMSWNSKHELDRAKV 189
+ + + +++ + + E + V
Sbjct: 92 LNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVR-V 150
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRN--LTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
+ + Y++GTTG KGV+ +HR L + AS + V+L +P FH+
Sbjct: 151 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKD-VVLPVVPMFHVN 209
Query: 248 GLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIV--VAMSKGGSTDGY 304
+ A + V+ D +++ + VT A P + +A +
Sbjct: 210 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRL 269
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE----STAGVF----RTVGPD 356
V G+A + + V + Q YGLTE ++ +
Sbjct: 270 KTL-RRLVVGGSAA---PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 325
Query: 357 ECRRWGSTGRLSAGLEA-KIVDPETGDSLPPGKEGE-LSIRGPTIMKGYVGEPEVTSATL 414
E + L L ++ D E GK + ++GP I GY G E T + L
Sbjct: 326 EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 385
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474
PDG+ RTGD+ DE+G++ I DRLKDLIK G ++ +LE+ L+ H +V +AAV+
Sbjct: 386 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAI 445
Query: 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKI-RRVAFINAIPKSAAGKILR 533
P + + P+A V E+ E + + ++ F IP+++AGK L+
Sbjct: 446 PHPKWQERPLAV-VVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLK 504
Query: 534 MELRK 538
LR+
Sbjct: 505 RALRE 509
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 6e-30
Identities = 91/381 (23%), Positives = 144/381 (37%), Gaps = 47/381 (12%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYG 248
D AAI+++SG+TG KGV+ THR A A+ S + + F +
Sbjct: 85 DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRD-------LAAFPPFA 137
Query: 249 LFFCFRAAALMETAVV--MQ-----RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
LF AL T V+ M D + +A+ E + +P ++ +++
Sbjct: 138 LF----GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE 193
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKF-PKVVLVQAYGLTE-------STAGVFRTV 353
+G L SL V AP+ D + F + P+ + YG TE V
Sbjct: 194 NGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAES 253
Query: 354 GPDECRRWGS-TGRLSAGLEAKIV----DPETGDS----LPPGKEGELSIRGPTIMKGYV 404
G G G++ +I+ P LPPG+ GE+ + GP + + Y
Sbjct: 254 AEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYY 313
Query: 405 GEPEVTSATLLPDG---WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL 461
PE T + DG W R GDL Y D+ G L+ R ++ G + +E +
Sbjct: 314 NRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRVETAGGTLFTVPVEQVFN 373
Query: 462 SHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV---ARQVSPYKKIRRVA 518
H V +A++ + Q P+ V P + + A+Q +I+ V
Sbjct: 374 RHPGVRRSALVGV-GKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAKQAPATVEIQAVL 432
Query: 519 FINAIPKSAA--GKILRMELR 537
P KI R L
Sbjct: 433 IHPQFPVDIRHNAKIFRERLA 453
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-29
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 10/187 (5%)
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLPD-- 417
GS R G+E IVD E G+ + G EG L I+ P +++ G+ E T
Sbjct: 404 GSATRPFPGVEPAIVDEE-GNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFP 462
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477
G+ TGD DEDG+ +I+ R+ D+I G+++ AE+E L+SH VA+AAV+ PDE
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDE 522
Query: 478 EAGQMPMAFVV----RQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILR 533
G+ AFV +P L E+ + V +++ P + F+ +PK+ +GKI+R
Sbjct: 523 VKGEAIYAFVTLKDGVEPSDEL-RKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMR 581
Query: 534 MELRKVA 540
LRK+A
Sbjct: 582 RILRKIA 588
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-29
Identities = 119/489 (24%), Positives = 197/489 (40%), Gaps = 57/489 (11%)
Query: 70 VSFSEFTRRTNSLASYL--------QNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI 121
+S+ E R T SLA L + V + +N FV + ++G++
Sbjct: 61 LSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAV------------FAVGLL 108
Query: 122 ISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSK 181
+ P++TE F + ++ L T++ D+ + + + ++
Sbjct: 109 GADVVPISTE---------------FRSDALAAALRAHHISTVVADNEFAERIAGADDAV 153
Query: 182 HELDRAKVCQSDVAA----------IMYSSGTTGRVKGVMLTHRNLTA-AVASSFASSPK 230
+D A + ++ +SGTTG+ KGV + +A V + +
Sbjct: 154 AVIDPATAGAEESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTR 213
Query: 231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP 290
+ + + MP FH GL AL T + + FD + L R P
Sbjct: 214 LRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPV 273
Query: 291 IVVAMSK--GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348
++ + + L L V L F + + L YG TE G
Sbjct: 274 VLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDI-LYNGYGSTEVGIG 332
Query: 349 VFRTVGPDECRRWGST-GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEP 407
T P + R T G+ AG +I+D + P G + + G Y
Sbjct: 333 ALAT--PADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTD-- 387
Query: 408 EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467
+ DG TGD+ Y+D G LFIV R D+I G V P +E+ L +H VA
Sbjct: 388 --GGGKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVA 445
Query: 468 DAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSA 527
D AVI PDE G AFVV P S ++ A++ +++ +VS +++ R + +++IP++
Sbjct: 446 DNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNP 505
Query: 528 AGKILRMEL 536
GK+LR EL
Sbjct: 506 TGKVLRKEL 514
|
Length = 516 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 9e-29
Identities = 81/283 (28%), Positives = 136/283 (48%), Gaps = 27/283 (9%)
Query: 277 VEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKF--P 332
+E+ +VT P + A+ + G +DLSSL + P+ + M +
Sbjct: 326 IEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKE 385
Query: 333 KVVLVQAYGLTE-------STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP 385
+ +V + TE G T P GS G+E +VD E G+ +
Sbjct: 386 RCPIVDTWWQTETGGIMITPLPGATPTK-P------GSATLPFFGIEPAVVD-EEGNPVE 437
Query: 386 -PGKEGELSIRG--PTIMKGYVGEPEVTSATLLPD--GWMRTGDLCYIDEDGFLFIVDRL 440
PG+ G L I+ P +++ G+ E T G+ TGD D+DG+++I R+
Sbjct: 438 GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRV 497
Query: 441 KDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE--- 497
D+I G+++ AE+E L+SH VA+AAV+ PD+ GQ AFV + ++
Sbjct: 498 DDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELR 557
Query: 498 AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
E+ + V +++ P K ++ F+ +PK+ +GKI+R LRK+A
Sbjct: 558 KELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIA 600
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-28
Identities = 126/521 (24%), Positives = 217/521 (41%), Gaps = 60/521 (11%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
+F+ R +LA L + ++ + + N E + F++ +G + +P N
Sbjct: 40 TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFDSMTMSWNSKH--- 182
+I I + + A + +L ++ R ++ P + +
Sbjct: 100 NDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKV 159
Query: 183 ------------ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230
D ++ ++ AAI YS+GTTG KGV+ +HR+L S +
Sbjct: 160 YSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL 219
Query: 231 RVSPAV-MLFTMPYFHIYGLFFCFRAAALME-TAVVMQRFDL--KMMLKAVEEF--RVTH 284
V+ L +P +H+ L + AA M T +V DL + K + RV H
Sbjct: 220 AVTHGESFLCCVPIYHV--LSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH 277
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
P + + + + + SL+ + G + + I A+ ++ V +V +G+TE
Sbjct: 278 GV--PTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTE 334
Query: 345 STAGVFRTV-----GPDECRRWG---STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396
++ TV G RW S GR A LE +IV+ EGE+ +RG
Sbjct: 335 TSP--VGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRG 392
Query: 397 PTIMKGYVGEP----------------EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL 440
+ Y P E + DGW+RTGD+ + DGFL I DR
Sbjct: 393 NWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRA 452
Query: 441 KDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE--A 498
+D+I+ G + A+LE+ +++ EV + AVI YPD++ G+ P+A V P A
Sbjct: 453 RDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETA 512
Query: 499 EIMEFVARQVSPYKKI-RRVAFINAIPKSAAGKILRMELRK 538
E + R P + F++ I K++ GK + +LR+
Sbjct: 513 ERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQ 553
|
Length = 576 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-27
Identities = 83/314 (26%), Positives = 134/314 (42%), Gaps = 42/314 (13%)
Query: 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
+D + + D+A + +SG+TG K V +TH NL A + F ++ V VM+ +P
Sbjct: 143 PIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLP 202
Query: 243 YFHIYGL--FF----CFRAAALMETAVVMQRFDLKMMLKAVEEFR--VTHAAVTPPIVVA 294
FH G+ F F A + T + R L + + ++R +T A ++A
Sbjct: 203 LFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWA-ELISKYRGTMTAAPNFAYALLA 261
Query: 295 --MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFAS-----KFPKVVLVQAYGLTESTA 347
+ + +DLSSL GA P+ + ++ AYG+ E+T
Sbjct: 262 RRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATL 321
Query: 348 GV-FRTVG-----------------------PDECRRWGSTGRLSAGLEAKIVDPETGDS 383
V F G RR + G GLE ++VD E G
Sbjct: 322 AVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQV 380
Query: 384 LPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL 443
LPP G + +RG ++ GY+ + DGW+ TGDL Y+ E+G + + R+KD+
Sbjct: 381 LPPRGVGVIELRGESVTPGYL-TMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDV 439
Query: 444 IKYKGYQVAPAELE 457
I G + P ++E
Sbjct: 440 IIMAGRNIYPTDIE 453
|
Length = 545 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-27
Identities = 98/359 (27%), Positives = 152/359 (42%), Gaps = 52/359 (14%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
DVA ++ +SGTTG KG MLT L AS+ A+ + P L +P HI GL
Sbjct: 35 DDVALVVATSGTTGTPKGAMLTAAAL---TASADATHDRLGGPGQWLLALPAHHIAGLQV 91
Query: 252 CFRAAALMETAVVMQ---RFDLKMMLKAVEEFRV--THAAVTP-PIVVAMSKGGSTDGYD 305
R+ V + FD + +AV E + ++ P + A+ +T
Sbjct: 92 LVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAATAA-- 149
Query: 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG-VFRTVGPDECRRWGST 364
L+ L+ V G P + A+ + +V+ YG++E++ G V+
Sbjct: 150 LAELDAVLVGGGPAPAP--VLDAAAAAGINVVRTYGMSETSGGCVY-------------D 194
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-----GW 419
G G+ ++ D G +++ GPT+ KGY + PD GW
Sbjct: 195 GVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVD-------PDPFAEPGW 235
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEA 479
RT DL +D DG L ++ R D I G V P +E L +H VAD AV PD+
Sbjct: 236 FRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRL 294
Query: 480 GQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
GQ +A VV + + VAR + R + ++ +P+ GK+ R L +
Sbjct: 295 GQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVR 353
|
Length = 358 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-27
Identities = 105/376 (27%), Positives = 155/376 (41%), Gaps = 67/376 (17%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF-TMPYFHIYGLFF 251
D A I+++SG+ G KGV+L+HRNL A A A SP +F +P FH +GL
Sbjct: 794 DPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARID--FSPEDKVFNALPVFHSFGL-- 849
Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEF---RVTHAAVTPPIVVAMSKGGST------- 301
++ +L V+ F H + P ++ +T
Sbjct: 850 --TGGLVL------------PLLSGVKVFLYPSPLHYRIIPELIYDT---NATILFGTDT 892
Query: 302 ---------DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
YD SL V GA + ++T + KF + +++ YG+TE TA V
Sbjct: 893 FLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTE-TAPVIAL 950
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY-------VG 405
P + G+ GRL G+E + ++P G + G G L +RGP +M GY V
Sbjct: 951 NTPMHNK-AGTVGRLLPGIEYR-LEPVPG--IDEG--GRLFVRGPNVMLGYLRAENPGVL 1004
Query: 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHRE 465
EP DGW TGD+ IDE+GF+ I R K K G ++ A +E L
Sbjct: 1005 EP-------PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWP 1057
Query: 466 VADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV-ARQVSPYKKIRRVAFINAIP 524
A A + PD G+ + S A + A S + I+ IP
Sbjct: 1058 DALHAAVSIPDARKGERIILLTTA---SDATRAAFLAHAKAAGASELMVPAEIITIDEIP 1114
Query: 525 KSAAGKILRMELRKVA 540
GKI + + K+A
Sbjct: 1115 LLGTGKIDYVAVTKLA 1130
|
Length = 1140 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-26
Identities = 118/505 (23%), Positives = 211/505 (41%), Gaps = 45/505 (8%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+S++E R+ N LA L + SIE+ + ++L G P +P
Sbjct: 537 VLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVE-RSIEMVVGLLAVLKAGGAYVPLDPE 595
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKH----RTILIDSPEFDSMTMSWNSKHEL 184
+ ++ + S + S H LA+L R++ +D P + S H
Sbjct: 596 YPQDRLAYMLDDSGVRLLLTQS---HLLAQLPVPAGLRSLCLDEPA---DLLCGYSGHNP 649
Query: 185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF 244
+ A + +A ++Y+SG+TG+ KGV ++H L V ++++ + F
Sbjct: 650 EVALDPDN-LAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAF 708
Query: 245 HIYGLFFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
+ F A A T ++ D + + + VT + P + A+ +
Sbjct: 709 DLGVTEL-FGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV 767
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP--DECR 359
+ CG L D + + P L+ YG TE+T GV + DE R
Sbjct: 768 AL--PRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGV--STYELSDEER 823
Query: 360 RWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD 417
+G+ G+ A L I+D + +P G GEL I G + +GY P +T+ +PD
Sbjct: 824 DFGNVPIGQPLANLGLYILDHYL-NPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPD 882
Query: 418 GW-------MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470
+ RTGDL DG + + R+ +K +G+++ E+E LL+ V +A
Sbjct: 883 PFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAV 942
Query: 471 VIPYPDEEAGQMPMAFVVR------QPHSSLNEAEIMEFVARQVSP-YKKIRRVAFINAI 523
V+ P + Q+ +A++V H + + ++ RQV P Y + ++++
Sbjct: 943 VLAQPGDAGLQL-VAYLVPAAVADGAEHQATRDE--LKAQLRQVLPDYMVPAHLLLLDSL 999
Query: 524 PKSAAGKILRMELRKVAVPSGSSCR 548
P + GK+ R L K P S+ +
Sbjct: 1000 PLTPNGKLDRKALPK---PDASAVQ 1021
|
Length = 3956 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-26
Identities = 88/280 (31%), Positives = 122/280 (43%), Gaps = 13/280 (4%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA---VMLFTMPYFHIY 247
DVA I+++SGT KGV LTH NL A + K SP VM+ +P FH Y
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL----KFFSPKEDDVMMSFLPPFHAY 237
Query: 248 GLFFCFRAAALMETAVVMQRFDL--KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
G C L VV L K +++ ++E +VT TP + K
Sbjct: 238 GFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESC 297
Query: 306 LSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
L SL V G KD++ A K FP + L Q YG TE + V + +
Sbjct: 298 LPSLRFVVIGGDAF-KDSLYQEALKTFPHIQLRQGYGTTECSP-VITINTVNSPKHESCV 355
Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGE-PEVTSATLLPDGWMRTG 423
G G++ IV ET + G+ G + RG ++ GY+GE L + W TG
Sbjct: 356 GMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG 415
Query: 424 DLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH 463
DL Y+D G LF+ RL +K V+ LE +L+
Sbjct: 416 DLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEG 455
|
Length = 539 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 8e-26
Identities = 137/553 (24%), Positives = 227/553 (41%), Gaps = 104/553 (18%)
Query: 67 GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
G+ +S+ + R ++A+ LQ R S D A +L + + +F L GVI PA
Sbjct: 38 GVVLSYRDLDLRARTIAAALQ--ARASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAY 95
Query: 127 PVNTESEISRQ---------IQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TM 176
P E +R+ I + P + + + L +++ ++PE + T+
Sbjct: 96 P----PESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAA-ANAPELLCVDTL 150
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVS 233
+ D+A + Y+SG+T KGV ++H NL A + F ++
Sbjct: 151 DPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGID---LN 207
Query: 234 PA-VMLFTMPYFHIYGLF-------FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
P V++ +P +H GL F LM A ++R L+ L+A+ E+ T +
Sbjct: 208 PDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLER-PLRW-LEAISEYGGTIS 265
Query: 286 A---VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV-----VLV 337
+ + + DLS G+ P+ +D++ FA KF
Sbjct: 266 GGPDFAYRLCSERVSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFF 325
Query: 338 QAYGLTEST---AGVFRTVGPDECRRWG-----------------STGRLSAGLEAKIVD 377
+YGL E+T +G R G S GR G IVD
Sbjct: 326 ASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVD 385
Query: 378 PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCYIDEDGFL 434
P++ + L + GE+ GP+I GY PE ++ T + DG W+RTGDL ++ DG L
Sbjct: 386 PQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFL-RDGEL 444
Query: 435 FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA-DAAVIPYPDEEAGQMPMAFVVRQPHS 493
F+ RLKD++ +G+ + P ++E + EV V + G+ +
Sbjct: 445 FVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQGEEGIGIA------ 498
Query: 494 SLNEAEIMEFVARQVSP---YKKIRR------------VAFIN--AIPKSAAGKILRMEL 536
AEI V + + P K IR+ V +N A+PK+++GK+ R
Sbjct: 499 ----AEISRSVQKILPPQALIKSIRQAVAEACQEAPSVVLLLNPGALPKTSSGKLQR--- 551
Query: 537 RKVAVPSGSSCRL 549
S+CRL
Sbjct: 552 --------SACRL 556
|
Length = 4334 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 101/416 (24%), Positives = 170/416 (40%), Gaps = 35/416 (8%)
Query: 152 VVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC---QSDVAAIMYSSGTTGRVK 208
V LA ++ P D + ++HE + V ++ + I+Y+SGTTG+ K
Sbjct: 195 VDRGLAPMRLI------PGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPK 248
Query: 209 GVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--- 265
GV A+A S + + VM + G + A L A V+
Sbjct: 249 GVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308
Query: 266 --QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGK 321
D + VE + V P + + K + +DLSSL + PL +
Sbjct: 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDE 368
Query: 322 DTIMAFASKFPKVVLVQAYGLTES---TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP 378
T K V + Y TE+ + + + GS G G +++D
Sbjct: 369 PTAHWITDGLGKPV-IDNYWQTETGWPVLAIMPGLDLKPVK-LGSPGLPMYGYHLRVLDE 426
Query: 379 ETGDSLPPGKEGELSIRGP------TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432
TG P ++G L++ P + + G T + + D DEDG
Sbjct: 427 ATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDG 486
Query: 433 FLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH 492
+ FI+ R D+I G+++ E+E + SH VA+ AV+ DE GQ+ + F + +
Sbjct: 487 YTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKES 546
Query: 493 SSLNEA--------EIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
S +A +M+ V RQ+ + RV F+ A+PK+ +GK+LR ++ +A
Sbjct: 547 DSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALA 602
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 65/177 (36%), Positives = 82/177 (46%), Gaps = 9/177 (5%)
Query: 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374
G APL DT F ++Q YGLTE+ AG T+ G G E K
Sbjct: 277 GGAPLSPDT-QEFLRVALGCPVLQGYGLTETCAGG--TLSDPGDTTTGHVGPPLPCCEIK 333
Query: 375 IVD-PETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432
+VD PE G + GE+ IRGP + KGY PE T+ DGW TGD+ DG
Sbjct: 334 LVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDG 393
Query: 433 FLFIVDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488
L I+DR K+L K +G VA +LE++ S V V Y D +A VV
Sbjct: 394 TLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICV--YGDSLK-SFLVAIVV 447
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 5e-25
Identities = 106/479 (22%), Positives = 191/479 (39%), Gaps = 25/479 (5%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+ ++E RR N LA L + + V SIE+ + ++L G P +P
Sbjct: 536 TLDYAELNRRANRLAHALIERG-VGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPE 594
Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLA-KLKHRTILIDSPEFDSMTMSWNSKH--ELD 185
++ ++ S + + S + KL + + +D P +W + E
Sbjct: 595 YPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPA------AWLEGYSEENP 648
Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF- 244
++ ++A ++Y+SG+TG+ KG HR L+ + + V V+ T F
Sbjct: 649 GTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFD 708
Query: 245 -HIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG 303
++ F+ + A + A D +++ + V P ++ A +
Sbjct: 709 VSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA- 767
Query: 304 YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS 363
+SL + C L D +K P+ L YG TE+ V +E
Sbjct: 768 -SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVP 826
Query: 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM--- 420
GR A L I+D + +P G GEL + G + +GY G P +T+ +P ++
Sbjct: 827 IGRPIANLACYILDAN-LEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGE 885
Query: 421 ---RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477
RTGDL DG + R+ +K +G ++ E+E LL H V +AAV+
Sbjct: 886 RMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLA---- 941
Query: 478 EAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
G+ + +VV + + +A + Y + + +P + GK+ R L
Sbjct: 942 VDGKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALERLPLTPNGKLDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 98/383 (25%), Positives = 149/383 (38%), Gaps = 58/383 (15%)
Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFH- 245
+V D ++++SGTTG K V +H L A + V +MP FH
Sbjct: 145 REVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFA-GRALTERFGLTRDDVCYVSMPLFHS 203
Query: 246 --IYGLFFCFRAAALMETAVVMQR--FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
+ + A A+ A V F L V + T+ + G
Sbjct: 204 NAVMAGW----APAVASGAAVALPAKFSASGFLDDVRRYGATY----------FNYVGKP 249
Query: 302 DGYDLSSLE---------TVACG--AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
Y L++ E VA G A+P +D I F+ +F + YG S+ G
Sbjct: 250 LAYILATPERPDDADNPLRVAFGNEASP--RD-IAEFSRRF-GCQVEDGYG---SSEGAV 302
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK-------------EGEL-SIRG 396
V GS GR + G+ I +PET + GEL + G
Sbjct: 303 IVVREPGTPP-GSIGRGAPGVA--IYNPETLTECAVARFDAHGALLNADEAIGELVNTAG 359
Query: 397 PTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAEL 456
+GY PE T A + G +GDL Y D DG+++ R D ++ G ++ A +
Sbjct: 360 AGFFEGYYNNPEAT-AERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPI 418
Query: 457 EHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQ--VSPYKKI 514
E +LL H + AV PDE G MA +V + ++ + F+A Q +
Sbjct: 419 ERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWP 478
Query: 515 RRVAFINAIPKSAAGKILRMELR 537
R V +P +A K+L+ EL
Sbjct: 479 RYVRIAADLPSTATNKVLKRELI 501
|
Length = 540 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-24
Identities = 122/485 (25%), Positives = 198/485 (40%), Gaps = 94/485 (19%)
Query: 25 LRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLAS 84
LR L P+DA + +DY + D + ++T +S+ RRT ++A
Sbjct: 7 LRERASLQPDDAAFTFIDY-----------EQDPAGVAETLT-----WSQLYRRTLNVAE 50
Query: 85 YLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI---ISPANPVNTESEISRQIQLS 141
L+ S D A +L+ +E + + L G+I +S + +S ++ +
Sbjct: 51 ELRRHG--STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDT 108
Query: 142 NPVIAFATSSVVHKLAKLKHR--------TILIDSPEFDSMTMSWNSKHELDRAKVCQSD 193
+P + TS+VV + + I +D + DS D
Sbjct: 109 SPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLDS-------PRGSDARPRDLPS 161
Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTA----AVASSFASSPKRVSPAVMLFT-MPYFH--- 245
A + Y+SG+T GVM++HRN+ A ++ F + P + + +P++H
Sbjct: 162 TAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMG 221
Query: 246 -IYGLF---FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
+ G+ A L +QR M L A AA +A+ K
Sbjct: 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLA-SNPHAFSAAPNFAFELAVRKTSDD 280
Query: 302 D--GYDLSSLETVACGAAPLGKDTIMAFASKF-----PKVVLVQAYGLTESTAGVF---R 351
D G DL + + G+ + T+ FA +F + + +YGL E+T V+ R
Sbjct: 281 DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT--VYVATR 338
Query: 352 TVG---------PDE--------CRRWGSTGRLSAGL----EAKIVDPETGDSLPPGKEG 390
G ++ C G T +S G +IVDP+T P G G
Sbjct: 339 EPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTCIECPAGTVG 398
Query: 391 ELSIRGPTIMKGYVGEPEVT----SATLL------PDG-WMRTGDLCYIDEDGFLFIVDR 439
E+ + G + GY +PE T ATL+ P+G W+RTGDL +I E LFIV R
Sbjct: 399 EIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFISEGE-LFIVGR 457
Query: 440 LKDLI 444
+KDL+
Sbjct: 458 IKDLL 462
|
Length = 578 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-23
Identities = 115/542 (21%), Positives = 209/542 (38%), Gaps = 59/542 (10%)
Query: 23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSL 82
H+ P + + + + A P + AL+ ++S++E RR N L
Sbjct: 3082 HAWNATAAAYPSERLV--HQLIEAQVARTP----EAPALV--FGDQQLSYAELNRRANRL 3133
Query: 83 ASYLQNVTRLSKNDTAF-VLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
A L + D V S+E+ + ++L G P +P ++ I+ S
Sbjct: 3134 AHRL--IAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDS 3191
Query: 142 NPVIAFATSSVVHKLAKLKH-RTILIDSPEFDSMTMSWNSKHELDRAKVCQSD-VAAIMY 199
+ + ++ +L + +D + N E + + + +A ++Y
Sbjct: 3192 GVKLLLTQAHLLEQLPAPAGDTALTLDR-------LDLNGYSENNPSTRVMGENLAYVIY 3244
Query: 200 SSGTTGRVKGVMLTH---RNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256
+SG+TG+ KGV + H N +A ++ + V+LF F F A
Sbjct: 3245 TSGSTGKPKGVGVRHGALANHLCWIAEAYELD---ANDRVLLFMS---------FSFDGA 3292
Query: 257 ------ALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
L+ ++ R +D + + +A+ R++ A P + ++ G D
Sbjct: 3293 QERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADC 3350
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST- 364
+SL+ G + K L YG TE+ V G D
Sbjct: 3351 ASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAP 3410
Query: 365 -GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM--- 420
GR AG ++D + +P G GEL I G + +GY P +T+ + D +
Sbjct: 3411 IGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSG 3469
Query: 421 ----RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPD 476
RTGDL DG + + R+ +K +G+++ E+E LL H V +A V+ D
Sbjct: 3470 GRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLAR-D 3528
Query: 477 EEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
G+ +A+VV + + +A + Y ++ + A+P GK+ R L
Sbjct: 3529 GAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNGKVDRKAL 3588
Query: 537 RK 538
Sbjct: 3589 PD 3590
|
Length = 3956 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 100/381 (26%), Positives = 151/381 (39%), Gaps = 42/381 (11%)
Query: 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASS--PKRVSPAV 236
D A V D I+Y+SG+TG KGV ++H NL T + + F S + ++ A
Sbjct: 132 VSFDHA-VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAP 190
Query: 237 MLFTMPYFHIY------GLFFCFRAAALMETAVVMQRF-DLKMMLKAVEEFRVTHAAVTP 289
F + +Y G C + F L L + V+
Sbjct: 191 FSFDLSVMDLYPCLASGGTLHCL-------DKDITNNFKLLFEELPKT----GLNVWVST 239
Query: 290 PIVVAM---SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
P V M + + Y + CG L T A +FPK + YG TE+T
Sbjct: 240 PSFVDMCLLDPNFNQENYP-HLTHFLFCGEE-LPVKTAKALLERFPKATIYNTYGPTEAT 297
Query: 347 AGVFRTVGPDECRRWGST---GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403
V E G + I+D E G+ LP G++GE+ I GP++ KGY
Sbjct: 298 VAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGY 356
Query: 404 VGEPEVTSATLLPDGWM---RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLL 460
+ PE T+ RTGD I DG LF RL IK GY++ ++E L
Sbjct: 357 LNNPEKTAEAFFSHEGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKLHGYRIELEDIEFNL 415
Query: 461 LSHREVADAAVIP-YPDEEAGQMPMAFVVRQPHSSLNE----AEIMEFVARQVSPYKKIR 515
+ A V+P Y + + +A +V + E I + + + + Y R
Sbjct: 416 RQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPR 475
Query: 516 RVAFINAIPKSAAGKILRMEL 536
+ + + +P +A GKI R L
Sbjct: 476 KFIYRDQLPLTANGKIDRKAL 496
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 102/422 (24%), Positives = 169/422 (40%), Gaps = 82/422 (19%)
Query: 69 RVSFSEFTRRTNSLASYLQN--VTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
+SF+E R++++A L + R + A ++ T S+E L F+L G +
Sbjct: 41 ELSFAELDARSDAIAHGLNAAGIGRGMR---AVLMVTPSLEFFALTFALFKAGAV----- 92
Query: 127 PVNTESEISRQ-----IQLSNP--VIAFATSSVVHKL-----AKLKHRTILIDSPEFDSM 174
PV + + + + + P I + + +L ++ + +
Sbjct: 93 PVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRL-VTVGGRLLWGG 151
Query: 175 T-----MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFA 226
T + + A + D+AAI+++SG+TG KGV+ TH A A+ +
Sbjct: 152 TTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYG 211
Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL--------KMMLKAVE 278
P + +P F ++ LF AL T+V+ D + A+E
Sbjct: 212 IEPGEID-------LPTFPLFALF----GPALGMTSVI-PDMDPTRPATVDPAKLFAAIE 259
Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
+ VT+ +P ++ + + G +G L SL V AP+ I F + P +
Sbjct: 260 RYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEIL 319
Query: 339 A-YGLTE--------STAGVFRTV-----GPDECRRWGSTGRLSAGLEAKIVD------P 378
YG TE S +F T G C GR G+E +I+ P
Sbjct: 320 TPYGATEALPISSIESREILFATRAATDNGAGIC-----VGRPVDGVEVRIIAISDAPIP 374
Query: 379 ETGDS--LPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG----WMRTGDLCYIDEDG 432
E D+ L G+ GE+ + GP + + Y PE T +PDG W R GDL Y+D G
Sbjct: 375 EWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQG 434
Query: 433 FL 434
L
Sbjct: 435 RL 436
|
Length = 552 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-23
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 10/187 (5%)
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLPD-- 417
GS R G++ +VD E G+ L G+ G L I+ P +M+ G+ E T
Sbjct: 424 GSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFK 482
Query: 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477
G TGD DEDG+ +I R+ D++ G+++ AE+E L++H +VA+AAV+ PD+
Sbjct: 483 GMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDD 542
Query: 478 EAGQMPMAFVV----RQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILR 533
GQ AFV +P L + E+ +V +++ P K + F +PK+ +GKI+R
Sbjct: 543 IKGQGIYAFVTLKGGEEPSDELRK-ELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMR 601
Query: 534 MELRKVA 540
LRK+A
Sbjct: 602 RILRKIA 608
|
Length = 637 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 89/366 (24%), Positives = 156/366 (42%), Gaps = 26/366 (7%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-----VMLFTMPYFHIY 247
++A ++Y+SG+TG KGV ++H L A ++ +SPA M F+ H
Sbjct: 2147 NLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY--ELSPADCELQFMSFSFDGAH-E 2203
Query: 248 GLF--FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
F A L+ + +D + + +E VT P + +++ DG
Sbjct: 2204 QWFHPLLNGARVLIRDD---ELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRP 2260
Query: 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES--TAGVFRTVGPDECRRWGS 363
+ + G + ++ V L YG TE+ T +++ D C
Sbjct: 2261 PA-VRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYV 2319
Query: 364 -TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW--- 419
GR A I+D + L PG GEL + G + +GY+ P +T+ +PD +
Sbjct: 2320 PIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSAS 2378
Query: 420 ----MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475
RTGDL DG + + R+ +K +G+++ E+E L +H V +A V+
Sbjct: 2379 GERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQ- 2437
Query: 476 DEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRME 535
D +G+ +A+VV + AE+ ++A ++ Y + +P + GK+ R
Sbjct: 2438 DGASGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNGKLDRKA 2497
Query: 536 LRKVAV 541
L K V
Sbjct: 2498 LPKPDV 2503
|
Length = 5163 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 6e-22
Identities = 127/530 (23%), Positives = 208/530 (39%), Gaps = 77/530 (14%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYL--QNVTRLSKNDTAFVLSTNSIEIPIL 111
+ + +AL + + E LA+ L Q+V+R S+ V+S N P
Sbjct: 26 QQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSR---VLVISDNG---PET 79
Query: 112 YFSLLS---LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS 168
Y S+L+ LG I A+ + I R Q+++P A + + I
Sbjct: 80 YLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPV 139
Query: 169 PEFDSMTMSWNSKHELDRAKVCQS------DVAAIMYSSGTTGRVKGVMLTHRNLTAA-- 220
D ++ S+H LD A + + D A++++SGTTG K V+L +R A
Sbjct: 140 IAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPD 199
Query: 221 ------------VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--- 265
V SP +P HI GL++ LM + +
Sbjct: 200 ILQKEGLNWVTWVVGETTYSP-----------LPATHIGGLWWILTC--LMHGGLCVTGG 246
Query: 266 -QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324
L +L V + P ++ + + + SL V G +
Sbjct: 247 ENTTSLLEILTTNA---VATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGS-----RA 298
Query: 325 MAFASKFPK---VVLVQAYGLTES--TAGVFRTVGPDECR-RWGSTGRLSAGLEAKIVDP 378
+A +F + V Q YGL+E+ TA T + G+ GR G++ +
Sbjct: 299 IAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAAT 358
Query: 379 ETGDSLPPGKE-----GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433
+ PG G L I+ P M GY PE T+ L+ DGW+ TGDL EDGF
Sbjct: 359 DGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI-DGWVNTGDLLERREDGF 417
Query: 434 LFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS 493
+I R ++I G +AP E++ + V +AA PDEE G + VV +
Sbjct: 418 FYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVV--ASA 475
Query: 494 SLNEAEIMEFVARQVSPYK-------KIRRVAFINAIPKSAAGKILRMEL 536
L+E+ + ++ + + + IP++ +GK++R L
Sbjct: 476 ELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASL 525
|
Length = 540 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 18/203 (8%)
Query: 340 YGLTESTAGVFRTVGPDECRRWG-STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398
YG+TE TA T+ PD+ S+G++ A+I ++P + G ++I+ +
Sbjct: 261 YGMTE-TASQIATLKPDDFLAGNNSSGQVLPH--AQI-------TIPANQTGNITIQAQS 310
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458
+ GY P+ L G T DL Y+D G+L I+ R I G V PAE+E
Sbjct: 311 LALGYY--PQ----ILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEA 364
Query: 459 LLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVA 518
+L+ V D V+ PD G++ A V + S++ E+ + Q+SP+K+ +
Sbjct: 365 AILATGLVQDVCVLGLPDPHWGEVVTAIYVPK-DPSISLEELKTAIKDQLSPFKQPKHWI 423
Query: 519 FINAIPKSAAGKILRMELRKVAV 541
+ +P++ GKI R +L+++AV
Sbjct: 424 PVPQLPRNPQGKINRQQLQQIAV 446
|
Length = 452 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 2e-21
Identities = 86/324 (26%), Positives = 139/324 (42%), Gaps = 64/324 (19%)
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFT-MPYFH 245
++D+ IMY+SGTTG KGV+LT+R + A V S+ + + + F+ +P H
Sbjct: 218 QKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH 277
Query: 246 IY----GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP--------IVV 293
+Y + + A+ + + D++ +++ V+ + T P I+
Sbjct: 278 VYDQVIETYCISKGAS-----IGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQ 332
Query: 294 AMSKGGSTD--------GYDLSSLET-----------------------------VACGA 316
+S GG Y L +L + GA
Sbjct: 333 KISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGA 392
Query: 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIV 376
APL + + F VL Q YGLTES G F ++ + G+ G +EA++
Sbjct: 393 APLPRH-VEEFLRVTSCSVLSQGYGLTESCGGCFTSIA-NVFSMVGTVGVPMTTIEARLE 450
Query: 377 D-PETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434
PE G D+L GE+ +RG T+ GY ++T L+ DGW TGD+ +G +
Sbjct: 451 SVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI-DGWFHTGDIGEWQPNGAM 509
Query: 435 FIVDRLKDLIKY-KGYQVAPAELE 457
I+DR K++ K +G VA LE
Sbjct: 510 KIIDRKKNIFKLSQGEYVAVENLE 533
|
Length = 660 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 2e-20
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 13/148 (8%)
Query: 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374
GAAP+ ++T+ F S + +++ YG++E++ TV + R S G+ G E K
Sbjct: 326 GAAPISRETLEFFLSL--NIPIMELYGMSETSGP--HTVSNPQNYRLLSCGKALPGCETK 381
Query: 375 IVDPET-GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433
I +P+ G GE+ I G + GY+ E T + DGW+ +GDL ++D+DGF
Sbjct: 382 IHNPDADGI-------GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGF 434
Query: 434 LFIVDRLKDLIKYKGYQ-VAPAELEHLL 460
L+I R+K+LI G + V P +E +
Sbjct: 435 LYITGRIKELIITAGGENVPPVPIEEAV 462
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 3e-20
Identities = 105/450 (23%), Positives = 188/450 (41%), Gaps = 55/450 (12%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTN-SIEIPILYFSLLSLGVIISPANP 127
+++ E RR N LA L + + ++ S+E+ + ++L G P +P
Sbjct: 1599 ELTYGELNRRANRLAHRL--IALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDP 1656
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDR 186
++ I+ S + S + +L R++++D + W +
Sbjct: 1657 EYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQED------DWLEGYSDSN 1710
Query: 187 AKVCQSD--VAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTM 241
V + +A ++Y+SG+TGR KG H L A ++ S + V+ FT
Sbjct: 1711 PAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSA---ADVVLQFT- 1766
Query: 242 PY---FHIYGLFFCFRAAALMETA-VVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVV 293
+ ++ LF+ L+ A +V+ D + +++ +E +VT P ++
Sbjct: 1767 SFAFDVSVWELFW-----PLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQ 1821
Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRT 352
+ + + L SL V CG L + + + + P L YG TE+ V T
Sbjct: 1822 QLLQMDEQVEHPL-SLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWT 1880
Query: 353 VGPDECRRWGSTGRLS-------AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVG 405
CRR GR S A L I+D + + +P G GEL + G + +GY+
Sbjct: 1881 -----CRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLN 1934
Query: 406 EPEVTSATLLPDGW-------MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458
P +T+ + D + RTGDL DG + + R+ +K +G+++ E+E
Sbjct: 1935 RPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEA 1994
Query: 459 LLLSHREVADAAVIPYPDEEAGQMPMAFVV 488
L V +A VI D G+ +A+VV
Sbjct: 1995 RLREQGGVREAVVIAQ-DGANGKQLVAYVV 2023
|
Length = 3956 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 4e-20
Identities = 69/232 (29%), Positives = 105/232 (45%), Gaps = 17/232 (7%)
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT---VGPDECRRWGS--TGRLS 368
CG L T +FP + YG TE+T V T + + ++ G
Sbjct: 268 CGEE-LPHKTAKKLLERFPSATIYNTYGPTEATVAV--TSIEITDEMLDQYKRLPIGYAK 324
Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-DGW--MRTGDL 425
I+D E G LP G++GE+ I GP++ KGY+ PE T+ DG TGD
Sbjct: 325 PDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDA 383
Query: 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMA 485
Y++ DG LF R+ IK GY++ E+E L V A V+PY + Q +A
Sbjct: 384 GYLE-DGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIA 442
Query: 486 FVVRQPHSSLNEAE----IMEFVARQVSPYKKIRRVAFINAIPKSAAGKILR 533
+VV + E E I + + ++ Y R+ + +++P + GKI R
Sbjct: 443 YVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDR 494
|
Length = 503 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 4e-20
Identities = 97/325 (29%), Positives = 135/325 (41%), Gaps = 69/325 (21%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS------SFASSPKRVSPAVMLFTMPYFH 245
D+ IMY+SGT+G KGV+LTH + V F K V L +P H
Sbjct: 220 LDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFED--KMTHDDVYLSFLPLAH 277
Query: 246 IYGLF---FCFRAAA---------------LMET-----AVVMQRFD--LKMMLKAVEEF 280
I + FR A LME A V + F+ + + KA++E
Sbjct: 278 ILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQEL 337
Query: 281 R---------------------VTHAAVTP-PIVVAMSKGGSTDGYDLSSLETVACGAAP 318
+H +P +A K + G L + G AP
Sbjct: 338 NPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLG---GRLRLLISGGAP 394
Query: 319 LGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVD 377
L + I F +VQ YGLTE+ T+G PDE G+ G + E ++ +
Sbjct: 395 LSTE-IEEFLRVTSCAFVVQGYGLTETLGPT--TLGFPDEMCMLGTVGAPAVYNELRLEE 451
Query: 378 -PETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLF 435
PE G D L GE+ +RG + GY PE+T + DGW TGD+ I +G L
Sbjct: 452 VPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLK 510
Query: 436 IVDRLKDLIKY-KGYQVAPAELEHL 459
I+DR K+LIK +G VA LE+L
Sbjct: 511 IIDRKKNLIKLSQGEYVA---LEYL 532
|
Length = 660 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 5e-20
Identities = 91/350 (26%), Positives = 148/350 (42%), Gaps = 54/350 (15%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF----HIYG 248
A I Y+SG+TG+ KGV L+ L VA S A + + P L +P +I G
Sbjct: 113 GTAKITYTSGSTGQPKGVCLSAAAL-ETVAQSLAEAIAILEPERHLCLLPLATLLENIAG 171
Query: 249 LFFCFRAAALMETAVVM-----------QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
++ A LM V++ D + A+ ++ + P +++A+
Sbjct: 172 VY----APLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQPHSLILVPQLLMALVA 227
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIM-AFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
SL VA G A + + A A P + + YGL+E A V P
Sbjct: 228 AVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP---VYEGYGLSEC-ASVVSLNTPG 283
Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416
R GS G+ ++ I + +GE+ +RG M GY+GEP
Sbjct: 284 A-DRPGSVGKPLPHVQVSIAN-----------DGEILVRGSL-MLGYLGEPPA------T 324
Query: 417 DGWMRTGDLCYIDEDGFLFIVDRLKDL-IKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475
D W TGDL ++DE+G+L+I R K+L I G V+P +E L +A A V
Sbjct: 325 DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVSPEWVESELQQAPAIAQAVVF--- 381
Query: 476 DEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR---QVSPYKKIRRVAFINA 522
+A +A +V P+ +++ ++ V + Q+ Y +I+ +
Sbjct: 382 -GDAQPFLVALIVPAPN--ISDDQLEAAVQQINAQLPDYARIKTWVRLRQ 428
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 1e-19
Identities = 113/493 (22%), Positives = 195/493 (39%), Gaps = 27/493 (5%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D VAL R+S++E RR N LA L + + V S+E+ +
Sbjct: 3069 RTPDAVALA--FGEQRLSYAELNRRANRLAHRLIERG-VGPDVLVGVAVERSLEMVVGLL 3125
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
++L G P +P E ++ ++ S + + S + LA+ L E
Sbjct: 3126 AILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDLDRGDE--- 3182
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233
N + ++A ++Y+SG+TG+ KGV + H L+ + + V
Sbjct: 3183 -----NYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVG 3237
Query: 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
V+ FT F ++ F V+ D + VE V
Sbjct: 3238 DRVLQFTTFSFDVFVEEL-FWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPS 3296
Query: 294 AMSKG-GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
+ D + +SL+ + CG L D + P L YG TE+T V
Sbjct: 3297 MLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQVFAGLP---LYNLYGPTEATITVTHW 3353
Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
+E + GR A I+D + + +P G GEL + G + +GY P +T+
Sbjct: 3354 QCVEEGKDAVPIGRPIANRACYILD-GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAE 3412
Query: 413 TLLPDGWM------RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREV 466
+PD ++ RTGDL DG + + R+ +K +G+++ E+E LL H V
Sbjct: 3413 RFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWV 3472
Query: 467 ADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKS 526
+A V+ G+ +A+VV + + + + + Y + F+ +P +
Sbjct: 3473 REAVVL----AVDGRQLVAYVVPEDEAGDLREALKAHLKASLPEYMVPAHLLFLERMPLT 3528
Query: 527 AAGKILRMELRKV 539
GK+ R L +
Sbjct: 3529 PNGKLDRKALPRP 3541
|
Length = 5163 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-19
Identities = 97/402 (24%), Positives = 159/402 (39%), Gaps = 72/402 (17%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT-MPYFHIYGLFF 251
D+A + YSSG+T +GV++THR L A + + +V P + +P++H GL
Sbjct: 177 DIAYLQYSSGSTRFPRGVIITHRALMAN-LRAISHDGLKVRPGDRCVSWLPFYHDMGLVG 235
Query: 252 CFRA--AALMETAVVMQRFDLKMM----LKAVEEFRVTHAAVTPP----IVVAMSKGGST 301
A + + R D L + R T + +PP +
Sbjct: 236 FLLTPVATQLSVDYLPTR-DFARRPLQWLDLISRNRGT-ISYSPPFGYELCARRVNSKDL 293
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKV-----VLVQAYGLTESTAGVF------ 350
DLS GA + D + FA F + +YGL E+T V
Sbjct: 294 AELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGS 353
Query: 351 ----------------RTVGPDECRRWGST----GRLSAGLEAKIVDPETGDSLPPGKEG 390
+ V P R T G+ G E +I + E G LP G
Sbjct: 354 GIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVG 412
Query: 391 ELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQ 450
+ +RGP++M GY + E + L DGW+ TGDL Y+ DG+L+I R KDLI G
Sbjct: 413 HICVRGPSLMSGYFRDEE-SQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRN 470
Query: 451 VAPAELEHLL-----LSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVA 505
+ P ++E + L + A A I + E +V +++ E +
Sbjct: 471 IWPQDIEWIAEQEPELRSGDAA-AFSIAQENGEK-------IVLLVQCRISDEERRGQLI 522
Query: 506 RQVSPYKKIRRVAFIN---------AIPKSAAGKILRMELRK 538
++ +R + ++P++++GK+ R + +K
Sbjct: 523 HALA--ALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKK 562
|
Length = 579 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 90.9 bits (225), Expect = 4e-19
Identities = 90/327 (27%), Positives = 145/327 (44%), Gaps = 68/327 (20%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRN---LTAAVASSFASSPKRVSPA-VMLFTMPYFHI 246
+SD+ IMY+SGTTG KGVM+++ + L A V S+ ++ V L +P HI
Sbjct: 222 KSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHI 281
Query: 247 YGLFF--CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV--------VAMS 296
+ CF A+ R D+K++++ + E + T P ++ +S
Sbjct: 282 FDRVIEECFIQHG---AAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLS 338
Query: 297 KGG--------STDGYDLSSLET-----------------------------VACGAAPL 319
GG S Y +++ + GAAPL
Sbjct: 339 DGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPL 398
Query: 320 GKDTIMAFASKFPKVV----LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKI 375
+ F +VV ++Q YGLTES AG F ++ PDE G+ G ++ ++
Sbjct: 399 A-----SHVESFLRVVACCHVLQGYGLTESCAGTFVSL-PDELDMLGTVGPPVPNVDIRL 452
Query: 376 VD-PETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433
PE D+L GE+ IRG T+ GY ++T L+ DGW+ TGD+ +G
Sbjct: 453 ESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHTGDVGEWQPNGS 511
Query: 434 LFIVDRLKDLIKY-KGYQVAPAELEHL 459
+ I+DR K++ K +G VA +E++
Sbjct: 512 MKIIDRKKNIFKLSQGEYVAVENIENI 538
|
Length = 666 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 1e-18
Identities = 74/312 (23%), Positives = 131/312 (41%), Gaps = 20/312 (6%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF- 251
++A ++Y+SG+TGR KGV ++H +L + ++ V+ F F
Sbjct: 4695 NLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLY 4754
Query: 252 ---CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
A+ ++ +D + + + E RVT P + +++ DG + S
Sbjct: 4755 HPLINGASVVIRDD---SLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPS 4810
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV--FRTVGPDEC-RRWGSTG 365
L G + + + V L YG TE+T V ++ D C + G
Sbjct: 4811 LRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIG 4870
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW------ 419
++D + + LP G GEL + G + +GY+ P +T+ +PD +
Sbjct: 4871 TPLGNRSGYVLDGQ-LNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGR 4929
Query: 420 -MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEE 478
RTGDL DG + + R+ +K +G+++ E+E L H V +A VI
Sbjct: 4930 LYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEG-A 4988
Query: 479 AGQMPMAFVVRQ 490
G+ + +VV Q
Sbjct: 4989 VGKQLVGYVVPQ 5000
|
Length = 5163 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVL---VQAYGLTEST--AGVFRTVGPDECRRWGS 363
+ + G PL T +F VV +Q +GLTE+ G+ RT G E +
Sbjct: 430 VRAMLSGGGPLSAAT-----QEFVNVVFGMVIQGWGLTETVCCGGIQRT-GDLEP---NA 480
Query: 364 TGRLSAGLEAKIVD-PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422
G+L G+E K++D E + P GE+ +RGP + KGY + E+T L DGW T
Sbjct: 481 VGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHT 540
Query: 423 GDLCYIDEDGFLFIVDRLKDLIK 445
GD+ I +G L I+ R+K L K
Sbjct: 541 GDVGSIAANGTLRIIGRVKALAK 563
|
Length = 700 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-18
Identities = 130/510 (25%), Positives = 200/510 (39%), Gaps = 108/510 (21%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI----ISPA 125
+++S+F R ++ + LQ VT+ D +L+ +++ I +F L G I PA
Sbjct: 56 LTWSQFGARNRAVGARLQQVTK--PGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPA 113
Query: 126 NPVNTESEISRQIQLSNPVIAFATSSV--VHKL-----AKLKHRTILIDS-PEFDSMTMS 177
P + + + I T S V K AK + R I +D+ P D + +
Sbjct: 114 EPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP--DEVGAT 171
Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-----ASSFASSPKRV 232
W + + +A + Y+SG+T GV +TH NL V A + V
Sbjct: 172 W------VPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGV 225
Query: 233 SPAVMLFTMPYFHIYGLF------FCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVT 283
S +P+FH GL M A ++R + ++ K
Sbjct: 226 S------WLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTF 279
Query: 284 HAAVTPPIVVAMSKGGSTDG---YDLSSLETVACGAAPLGKDTIMAFASKF-----PKVV 335
AA A ++G DG DLS+++ + G+ P+ ++ F F P
Sbjct: 280 SAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTA 339
Query: 336 LVQAYGLTESTAGVFRTVGPDECR------------RW-------------GSTGRLSAG 370
+ +YG+ E+T V T +E R+ S G++
Sbjct: 340 IKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVS 399
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL---------------L 415
A IVDPET LP G+ GE+ + G I GY G+PE T+AT
Sbjct: 400 EWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGA 459
Query: 416 PDG--WMRTGDL-CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA--- 469
PD W+RTGD Y DG L+I R+KDL+ G P +LE+ + +E A
Sbjct: 460 PDDALWVRTGDYGVYF--DGELYITGRVKDLVIIDGRNHYPQDLEY---TAQEATKALRT 514
Query: 470 ---AVIPYPDEEAGQMPMAFVVRQPHSSLN 496
A P A Q+P V H+ L
Sbjct: 515 GYVAAFSVP---ANQLPQV-VFDDSHAGLK 540
|
Length = 631 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 6e-18
Identities = 110/516 (21%), Positives = 181/516 (35%), Gaps = 95/516 (18%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D AL+ +S++E R N A + + K D +L N E + L
Sbjct: 52 DRPALLFE--DQSISYAELNARANRYAHWAAARG-VGKGDVVALLMENRPEYLAAWLGLA 108
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----HRTILIDSPEF 171
LG +++ N + ++ + L + +V + + + + +
Sbjct: 109 KLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDT 168
Query: 172 DSMTMSWNSKHEL----------DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
+ R+ V D A +Y+SGTTG K +++H A
Sbjct: 169 LDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKA- 227
Query: 222 ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAVEE 279
F + V+ +P +H G + ++ L T + ++F V
Sbjct: 228 MGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAW-SSVLAAGATLALRRKFSASRFWDDVRR 286
Query: 280 FRVTH-------------AAVTPPIVVAMSKGGSTD-GYDLSSLETVACGAAPLGKDTIM 325
+R T P TD + L + G L D
Sbjct: 287 YRATAFQYIGELCRYLLNQPPKP-----------TDRDHRL----RLMIGNG-LRPDIWD 330
Query: 326 AFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLE--AKIV--DPE 379
F +F P+++ + Y +E G D G+ GR+ L IV D +
Sbjct: 331 EFQQRFGIPRIL--EFYAASEGNVGFINVFNFD-----GTVGRVPLWLAHPYAIVKYDVD 383
Query: 380 TGDSL----------PPGKEGEL----SIRGPTIMKGYVGEPEVTSATLLPDG------W 419
TG+ + PG+ G L + RGP GY +PE + +L D W
Sbjct: 384 TGEPVRDADGRCIKVKPGEVGLLIGRITDRGP--FDGY-TDPEASEKKILRDVFKKGDAW 440
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAV----IPYP 475
TGDL D G VDRL D ++KG VA E+E+ L V +A V +P
Sbjct: 441 FNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGT 500
Query: 476 DEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPY 511
D AG MA +V + + A + + ++ Y
Sbjct: 501 DGRAG---MAAIVLADGAEFDLAALAAHLYERLPAY 533
|
Length = 600 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 1e-17
Identities = 86/377 (22%), Positives = 154/377 (40%), Gaps = 51/377 (13%)
Query: 197 IMYSSGTTGRVKGVMLTH-RNLTAAVASSFASSPKRVSPAVMLFTMP-----YFH--IYG 248
I+Y+SGTTG K V+ ++ +L + K + ++F+ FH +YG
Sbjct: 259 ILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIP--TVVFSHSSIGWVSFHGFLYG 316
Query: 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD------ 302
+ E ++ + + +E+ +VTH P + + K TD
Sbjct: 317 SLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIK---TDPEATII 373
Query: 303 --GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
YDLS+L+ + CG + +++I + K+ + YG TE G
Sbjct: 374 RSKYDLSNLKEIWCGGEVI-EESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHIN-IP 431
Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD--- 417
+ +TG S ++ I+ + G L + GE++ + P P + T +
Sbjct: 432 YNATGVPSIFIKPSILSED-GKELNVNEIGEVAFKLPM--------PPSFATTFYKNDEK 482
Query: 418 ---------GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468
G+ +GDL + DE+G+ IV R D IK G +V +E +L H V +
Sbjct: 483 FKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLE 542
Query: 469 AAVIPYPDEEAGQMPMAFVV-----RQPHSSLNE--AEIMEFVARQVSPYKKIRRVAFIN 521
I D + +P+ +V LN+ EI + + + +R++ +N
Sbjct: 543 CCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVN 602
Query: 522 AIPKSAAGKILRMELRK 538
+PK+ GKI R + K
Sbjct: 603 QLPKTKTGKIPRQIISK 619
|
Length = 647 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-17
Identities = 74/267 (27%), Positives = 117/267 (43%), Gaps = 37/267 (13%)
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASK-----FPKVVLVQAYGLTESTAGVF-- 350
DL +L G P+ D FA+ F +YGL EST V
Sbjct: 263 ARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVP 322
Query: 351 ---------RTVGPDE--CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE-GELSIRGPT 398
D RR G G+E +I + G + G+E GE+ IRG +
Sbjct: 323 VPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGD-GAAGVAGREIGEIEIRGAS 381
Query: 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458
+M GY+G+ A + PD W TGDL Y+ + G L + R K+LI G + P E+E
Sbjct: 382 MMSGYLGQ-----APIDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVAGRNIFPTEIER 435
Query: 459 LLLSHREVADAAVIPYPDEEAGQMP---MAFVVRQPHSSLNEAEIMEFVARQ--VSPYKK 513
+ R V + AV+ E P +A R P + +E+++ VA + V P
Sbjct: 436 VAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVASECGVVPSD- 494
Query: 514 IRRVAFI--NAIPKSAAGKILRMELRK 538
V F+ ++P++++GK+ R+ +++
Sbjct: 495 ---VVFVAPGSLPRTSSGKLRRLAVKR 518
|
Length = 525 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 84.7 bits (209), Expect = 3e-17
Identities = 107/457 (23%), Positives = 187/457 (40%), Gaps = 32/457 (7%)
Query: 92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151
LS D + +S ++ L + L+ GV+ ANP + + + + P + + +
Sbjct: 52 LSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDA 111
Query: 152 VVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI-MYSSGTTGRVKGV 210
+ + + + ++ E MS ++ + D A Y+SGTTG K
Sbjct: 112 LRDRFQP----SRVAEAAEL----MSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAA 163
Query: 211 MLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGL----FFCFRAAALMETAVVM 265
+ H + V + R++P L + + YGL +F
Sbjct: 164 IHRHADPLTFV-DAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAP 222
Query: 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325
+ +L A V + P + S D + SL V L
Sbjct: 223 VTPEAAAILSARFGPSVLYG--VPNFFARVIDSCSPDSF--RSLRCVVSAGEALELGLAE 278
Query: 326 AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP 385
F + ++ G TE F + DE R G+ GR+ E ++V P+ G +
Sbjct: 279 RLMEFFGGIPILDGIGSTE-VGQTFVSNRVDEWRL-GTLGRVLPPYEIRVVAPD-GTTAG 335
Query: 386 PGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-GWMRTGDLCYIDEDGFLFIVDRLKDLI 444
PG EG+L +RGP I KGY P+ + + + GW+ T D ID DG++ R D
Sbjct: 336 PGVEGDLWVRGPAIAKGYWNRPD----SPVANEGWLDTRDRVCIDSDGWVTYRCRADDTE 391
Query: 445 KYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV 504
G V P E+E L++ VA+AAV+ + AF+V ++++ + +M +
Sbjct: 392 VIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGS-VMRDL 450
Query: 505 AR----QVSPYKKIRRVAFINAIPKSAAGKILRMELR 537
R ++S +K R A ++ +P++ GK++R LR
Sbjct: 451 HRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALR 487
|
Length = 705 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 4e-17
Identities = 143/568 (25%), Positives = 225/568 (39%), Gaps = 131/568 (23%)
Query: 68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI----IS 123
+ +++++ R ++ + LQ V D +L+ I+ +F+ + G I +
Sbjct: 67 VELTWTQLGVRLRAVGARLQQVAG--PGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFA 124
Query: 124 PANPVNTESEISRQIQLSNPVIAFATS----SVVHKLAKLKH----RTILIDS-PEFDSM 174
P P + E + ++ + P + T+ +V L L R I ID+ P DS
Sbjct: 125 PELPGHAE-RLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP--DSA 181
Query: 175 TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR----NLTAAVASSFASSP- 229
++ DV+ + Y+SG+T GV +THR NL + S
Sbjct: 182 G------ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRN 235
Query: 230 -KRVSPAVMLFTMPYFHIYGL-FFCFRAAA-----LME-TAVVM--QRFDLKMMLKAVEE 279
VS +P +H GL F A LM TA V QR+ +K + +
Sbjct: 236 THGVS------WLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRW-IKALSEGSRT 288
Query: 280 FRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC--GAAPLGKDTIMAFASKF-----P 332
RV AA A +G +G D+ L V G+ P+ D + F F P
Sbjct: 289 GRVVTAAPNFAYEWAAQRGLPAEGDDID-LSNVVLIIGSEPVSIDAVTTFNKAFAPYGLP 347
Query: 333 KVVLVQAYGLTESTAGVFRTVGPD--------ECRRWG------------------STGR 366
+ +YG+ E+T V T+ PD + + G S G+
Sbjct: 348 RTAFKPSYGIAEATLFV-ATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQ 406
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL-------LPDG- 418
++ A IVDP+TG LP G+ GE+ + G I +GY G PE T T L +G
Sbjct: 407 VARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGS 466
Query: 419 ----------WMRTGDL-CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467
W+RTGDL Y+ DG L+I R+ DLI G P ++E VA
Sbjct: 467 HADGAADDGTWLRTGDLGVYL--DGELYITGRIADLIVIDGRNHYPQDIE------ATVA 518
Query: 468 DA---------AVIPYPDEEAGQMPMAFVV---RQPHSSLNE-AEIMEFVARQVS----- 509
+A P E+ ++ V+ R +S + A ++ + VS
Sbjct: 519 EASPMVRRGYVTAFTVPAEDNERL----VIVAERAAGTSRADPAPAIDAIRAAVSRRHGL 574
Query: 510 PYKKIRRVAFINAIPKSAAGKILRMELR 537
+R V AIP++ +GK+ R R
Sbjct: 575 AVADVRLVP-AGAIPRTTSGKLARRACR 601
|
Length = 612 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 5e-17
Identities = 114/517 (22%), Positives = 179/517 (34%), Gaps = 101/517 (19%)
Query: 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
++SE A +L + D + +TNS E L+ +L S+G + + N N
Sbjct: 7 TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFIN-YNL 65
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190
+ ++H L K+ +I P+
Sbjct: 66 SGD-----------------PLIHCL-KISGAKFVIVDPD-------------------- 87
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT-MPYFHIYGL 249
D AA++Y+SGTTG KG ++ R V S+ S + +T MP +H
Sbjct: 88 --DPAALIYTSGTTGLPKGCAISWRRTL--VTSNPLSHDLNLQFPDRTYTCMPLYHGTAA 143
Query: 250 FFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAV----------TPPIVVAMSK 297
F L T + ++F K V + T TPP S
Sbjct: 144 FLGL-CYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPP-----SP 197
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF-RTVGP- 355
YD VA G L D F +F + + Y TE VGP
Sbjct: 198 ------YDRDHKVRVAYGNG-LRPDIWERFRERFNVPEIGEFYAATEGVFAFTNHNVGPF 250
Query: 356 --DECRRWGSTGRLSAGLEAKIV--DPETGDSL-----------PPGKEGELSIRGP--- 397
G R + +V DPET + P G+ GE+ R
Sbjct: 251 TAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKN 310
Query: 398 -TIMKGYVGEPEVTSATLLPD------GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQ 450
+ +GY+ + T + LL D W RTGDL D DG + +DRL D ++K
Sbjct: 311 RELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSEN 370
Query: 451 VAPAELEHLLLSHREVADAAV----IPYPDEEAGQMPMAFVVR-QPHSSLNEAEIMEFVA 505
V+ E+ +L + VA+A V +P D AG + + + + +
Sbjct: 371 VSTGEVADVLGAIPSVAEANVYGVKVPGYDGRAGCAAITLEESSAVETEFTKNLLAKLAR 430
Query: 506 RQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542
+++ Y + + + K + LRK V
Sbjct: 431 KRLPSYAVPLFLRLTEEVATTGNHKQQKGVLRKEGVD 467
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-15
Identities = 101/387 (26%), Positives = 159/387 (41%), Gaps = 64/387 (16%)
Query: 186 RAKVCQ--SDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-----ASSFASSPKRVSPAVML 238
A+V Q D A I+++SG+ G KGV+ +H++L A V + F + + +S
Sbjct: 357 LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMS----- 411
Query: 239 FTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV----VA 294
+P FH +GL L V + L H + P +V
Sbjct: 412 -ALPLFHSFGLTVGLFTPLLTGAEVFLYPSPL-------------HYRIVPELVYDRNCT 457
Query: 295 MSKGGST---------DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
+ G ST + YD + L V GA L + T + KF +L + YG+TE
Sbjct: 458 VLFGTSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTEC 516
Query: 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE--GELSIRGPTIMKGY 403
V V P + G+ GR+ G++A+++ PG E G L ++GP IM GY
Sbjct: 517 APVVSINV-PMAAKP-GTVGRILPGMDARLLSV-------PGIEQGGRLQLKGPNIMNGY 567
Query: 404 V-----GEPEVTSAT----LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPA 454
+ G EV +A + GW TGD+ DE GF+ I R K K G V+
Sbjct: 568 LRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLE 627
Query: 455 ELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKI 514
+E L L A D G+ A V+ S L ++ ++ P +
Sbjct: 628 MVEQLALGVSPDKQHATAIKSDASKGE---ALVLFTTDSELTREKLQQYAREHGVPELAV 684
Query: 515 -RRVAFINAIPKSAAGKILRMELRKVA 540
R + ++ +P +GK + L+ +
Sbjct: 685 PRDIRYLKQLPLLGSGKPDFVTLKSMV 711
|
Length = 718 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 8/178 (4%)
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDL 425
G++ IVD E G + G L ++ P + G+ E T G+ +GD
Sbjct: 462 GVQPVIVD-EKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDG 520
Query: 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMA 485
C D+DG+ ++ R+ D+I G+++ AE+E L+SH + A+AAV+ E GQ A
Sbjct: 521 CSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYA 580
Query: 486 FVVR---QPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
FV P+S ++ V Q+ + ++ + +PK+ +GKI+R LRK+A
Sbjct: 581 FVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 638
|
Length = 666 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 90/357 (25%), Positives = 156/357 (43%), Gaps = 21/357 (5%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
++A ++Y+SG+TG+ KGV TH L + A+ S V++ P ++ C
Sbjct: 1274 NLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSD-VLMQKAPISFDVSVWEC 1332
Query: 253 F----RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
F L+ R D + + + V+++ VT PP++ +S
Sbjct: 1333 FWPLITGCRLVLAGPGEHR-DPQRIAELVQQYGVTTLHFVPPLLQLFID--EPLAAACTS 1389
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV--FRTVGPDECRRWGSTGR 366
L + G L + + P+V L YG TE+ V ++ D R GR
Sbjct: 1390 LRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGER--SPIGR 1447
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW------- 419
+ +++D E + LPPG GEL I G + +GY+G P +T+ +PD
Sbjct: 1448 PLGNVLCRVLDAEL-NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARL 1506
Query: 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEA 479
RTGD + DG L + RL +K +G++V P E++ LL+ VA AAV+ + A
Sbjct: 1507 YRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVR-EGAA 1565
Query: 480 GQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
G + + + + +A ++ Y ++ ++ +P +GK+ R L
Sbjct: 1566 GAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIRLDQMPLGPSGKLDRRAL 1622
|
Length = 4334 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480
T DL Y E G L + R+ D+I G V P E+E ++L V +A V D AG
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAG 353
Query: 481 QMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
+ A V+ H ++ ++ E+ + ++PY+ + + IPK+A GK+ R L
Sbjct: 354 ERVKAKVI--SHEEIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL 407
|
Length = 414 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-13
Identities = 94/402 (23%), Positives = 155/402 (38%), Gaps = 56/402 (13%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
V++ E R ++LA L ++ L +LS NSIE ++ + + GV +P +P
Sbjct: 81 VTYGEAKRAVDALAQALLDL-GLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSP-- 137
Query: 130 TESEIS------RQI-QLSNPVIAFATSSV-----VHKLAKLKHRTILIDSPEFDSMTMS 177
S +S + + L P + FA S + L L + + P +++
Sbjct: 138 AYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIA 197
Query: 178 W--------NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA--S 227
+ + A + VA +++SG+TG K V+ T R + A +A
Sbjct: 198 FADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP 257
Query: 228 SPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV--------VMQRFDLKMMLKAVEE 279
P V L MP+ H G F L + F+ ++ + E
Sbjct: 258 REPDPPPPVSLDWMPWNHTMGGNANFNGL-LWGGGTLYIDDGKPLPGMFE--ETIRNLRE 314
Query: 280 FRVTHAAVTPP----IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDT---IMAFASKFP 332
T P + AM K + +L +A G A L D + A A +
Sbjct: 315 ISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTT 374
Query: 333 --KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG 390
++ YG TE TA D R G G G+E K+ P G +
Sbjct: 375 GHRIPFYTGYGATE-TAPTTTGTHWDT-ERVGLIGLPLPGVELKLA--------PVGDKY 424
Query: 391 ELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLC-YIDED 431
E+ ++GP + GY +PE+T+A +G+ R GD ++D D
Sbjct: 425 EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPD 466
|
Length = 624 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 1e-12
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 151 SVVHKLAKLKHRTILIDSPEFDSM----TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGR 206
++ + L + + + D+ + S + +K K D+A IMY+SGTTG
Sbjct: 68 AIEYILNETEISIVFCDAVKVYSFEELEELGKKNKVPPTPPK--PEDLATIMYTSGTTGN 125
Query: 207 VKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFF 251
KGVMLTH N+ A VA P+ + P V + +P HI+
Sbjct: 126 PKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYISYLPLAHIFERVV 171
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-12
Identities = 87/397 (21%), Positives = 162/397 (40%), Gaps = 47/397 (11%)
Query: 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT---AAVASSFA 226
E D+ ++ S L + Q A ++Y+SG+TG+ KGV+++H + AV F
Sbjct: 2312 EDDAAALAAYSDAPLPFLSLPQHQ-AYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFG 2370
Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAA------ALMETAVVMQR----FDLKMMLKA 276
H Y + F AA L+ A V+ R + + + +
Sbjct: 2371 MRADDCE----------LHFYSI--NFDAASERLLVPLLCGARVVLRAQGQWGAEEICQL 2418
Query: 277 VEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336
+ E +V+ TP +++ + G + + G L + + F +
Sbjct: 2419 IREQQVSILGFTPSYGSQLAQWLAGQG-EQLPVRMCITGGEALTGEHLQRIRQAFAPQLF 2477
Query: 337 VQAYGLTESTAGVFRTVGPDECRRWGST---GRLSAGLEAKIVDPETGDSLPPGKEGELS 393
AYG TE+ + P++ ++ GR+ A I+D + +P G GEL
Sbjct: 2478 FNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLA-LVPQGATGELY 2536
Query: 394 IRGPTIMKGYVGEPEVTSATLLPDGW-------MRTGDLCYIDEDGFLFIVDRLKDLIKY 446
+ G + +GY P +T+ + D + RTGDL + DG + V R+ +K
Sbjct: 2537 VGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKI 2596
Query: 447 KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR 506
+G+++ E+E LL H V +A V+ D +G+ ++V + ++
Sbjct: 2597 RGFRIELGEIESRLLEHPAVREAVVLAL-DTPSGKQLAGYLVSA-VAGQDDEAQAALREA 2654
Query: 507 -------QVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
Q+ Y + ++++P +A GK+ R L
Sbjct: 2655 LKAHLKQQLPDYMVPAHLILLDSLPLTANGKLDRRAL 2691
|
Length = 4334 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 3e-12
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPET---GDSLPPGKEGELSI 394
Q YGLTE+T +F D G +S + K+ ET D+LP +GEL I
Sbjct: 491 QGYGLTETTGPIFVQHADD-NNTESIGGPISPNTKYKVRTWETYKATDTLP---KGELLI 546
Query: 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445
+ +I GY E E T DG+ +TGD+ I+++G L +DR K L+K
Sbjct: 547 KSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVK 597
|
Length = 746 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-12
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 9/162 (5%)
Query: 315 GAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA 373
GA+PL D +M F F VL + YG+TE T+ V + + G G + E
Sbjct: 384 GASPLSPD-VMEFLRICFGGRVL-EGYGMTE-TSCVISGMDEGD-NLSGHVGSPNPACEV 439
Query: 374 KIVD-PETG--DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430
K+VD PE P GE+ +RGP I KGY + T + DGW+ TGD+
Sbjct: 440 KLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP 499
Query: 431 DGFLFIVDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAV 471
G L I+DR K++ K +G +AP ++E++ + VA V
Sbjct: 500 GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFV 541
|
Length = 651 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 4e-12
Identities = 112/495 (22%), Positives = 174/495 (35%), Gaps = 127/495 (25%)
Query: 52 PWRD-----DDTVALINSVTGLRVSFSEFTRRTNSLASYL--QNVTRLSKNDTAFVLSTN 104
PWR +AL + +++ + R + LA+ Q V + N
Sbjct: 8 PWRHWAQVRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQQGVVE---GSGVALRGKN 62
Query: 105 SIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA---KLKH 161
S E + Y +LL G + P NP + + +L L
Sbjct: 63 SPETLLAYLALLQCGARVLPLNPQLPQPLL-------------------EELLPSLTLDF 103
Query: 162 RTILIDSPEFDSMTM-SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN-LTA 219
+L F ++T +A + +SG+TG K + T + L +
Sbjct: 104 ALVLEGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLAS 163
Query: 220 A--VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR---AAALMETAVVMQRFDLKMML 274
A V S + + L ++P FH+ G +R A A T VV + L+ L
Sbjct: 164 AEGVLSLMPFTAQ----DSWLLSLPLFHVSGQGIVWRWLYAGA---TLVVRDKQPLEQAL 216
Query: 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL--SSLETVACGAAPLGKDTIMAFASKFP 332
THA++ P T + L + E ++ A LG I P
Sbjct: 217 AGC-----THASLVP-----------TQLWRLLDNRSEPLSLKAVLLGGAAI-------P 253
Query: 333 KVVLVQA-----------YGLTE--ST---------AGVFRTVGPDECRRWGSTGRLSAG 370
V L + YGLTE ST AGV G G
Sbjct: 254 -VELTEQAEQQGIRCWCGYGLTEMASTVCAKRADGLAGV---------------GSPLPG 297
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430
E K+VD GE+ +RG ++ GY + ++ +GW T D
Sbjct: 298 REVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ- 343
Query: 431 DGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQ 490
+G L I+ RL +L G + P E+E ++ H V V+P D E GQ P+A V +
Sbjct: 344 NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVV--E 401
Query: 491 PHSSLNEAEIMEFVA 505
S + E++
Sbjct: 402 SDSEAAVVNLAEWLQ 416
|
Length = 458 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-11
Identities = 109/522 (20%), Positives = 176/522 (33%), Gaps = 119/522 (22%)
Query: 70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
V+++E +R+N +A L L DT +L N ++ L LG + N
Sbjct: 4 VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNT-- 61
Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS----------PEFDSMTMSW- 178
I S++H R ++ D P +M +
Sbjct: 62 ---NIRSG-------------SLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVF 105
Query: 179 ------------NSKHELD-----------RAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
+ ++D R+ V A +Y+SGTTG K ++H
Sbjct: 106 YLSHTSPPEGVISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHL 165
Query: 216 NLTAAVASSFASSPKRVSPAVMLFTMPYFH----IYGLFFCFRAAALMETAVVMQRFDLK 271
+ S S + V+ T+P +H + G+ C A T V+ +F
Sbjct: 166 RVLQC--SGMLSLCGVTADDVVYTTLPLYHSSGALLGIVGCIGLGA---TLVLKPKFSAS 220
Query: 272 MMLKAVEEFRVT----------HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321
++ VT + P S L A G L
Sbjct: 221 QFWDDCRKYNVTVFQYIGELLRYLCNQPQ-----SDNDRDHKVRL------AIGNG-LRP 268
Query: 322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP--- 378
D F +F + + + Y TE G G R G+ GR A K++ P
Sbjct: 269 DVWREFLRRFGPIHVWETYASTEGNIGFINYTG-----RVGAVGR--ASCLYKLLSPFEL 321
Query: 379 -------------ETGDSLP--PGKEGEL--SIRGPTIMKGYVGEPEVTSATLLP----- 416
G +P G+ G L I + GY G E+T LL
Sbjct: 322 IKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKITSQSPFLGYAGPRELTEKKLLRDVFKK 381
Query: 417 -DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLL--LSHREVADAAVIP 473
D + TGDL D FL+ DR D ++KG VA E+ +L + + + +
Sbjct: 382 GDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATTEVADILTMVDFIQEVNVYGVT 441
Query: 474 YPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR 515
P E G+ MA V+ +P + + ++ + V + Y + R
Sbjct: 442 VPGHE-GRAGMAAVILKPGTEFDLEKLYQHVREFLPAYARPR 482
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 9e-10
Identities = 49/142 (34%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA 373
G APL DT F + + Q YGLTE+ AG + D S GR+ L
Sbjct: 427 SGGAPLSGDT-QRFINICLGAPIGQGYGLTETCAGATFSEWDDT-----SVGRVGPPLPC 480
Query: 374 ---KIVDPETGDSL---PPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG----WMRTG 423
K+V E G L P GE+ I GP++ GY E T D W TG
Sbjct: 481 CYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTG 540
Query: 424 DLCYIDEDGFLFIVDRLKDLIK 445
D+ DG L I+DR KD++K
Sbjct: 541 DIGQFHPDGCLEIIDRKKDIVK 562
|
Length = 696 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 83/319 (26%), Positives = 128/319 (40%), Gaps = 71/319 (22%)
Query: 193 DVAAIMYSSGTTGRVKGVM------------------LTHRNLTAAVAS-SFASSPKRVS 233
++A ++Y+SG+TG KGVM L+ ++ A AS SF S
Sbjct: 3870 NLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDIS----- 3924
Query: 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL----KMMLKAVEEFRVTHAAVTP 289
+ F AA L V + + + +L V+ +T P
Sbjct: 3925 ----------------VWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVP 3968
Query: 290 PIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFAS----KFPKVVLVQAYGLTES 345
++ M + D L L + P G+ A ++P++ LV AYG E
Sbjct: 3969 SLIQGML---AEDRQALDGLRWML----PTGEAMPPELARQWLQRYPQIGLVNAYGPAEC 4021
Query: 346 TAGV--FRTVGPDECRRWGS---TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
+ V FR D GS G + ++D E + +P G GEL + G +
Sbjct: 4022 SDDVAFFRV---DLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVG 4077
Query: 401 KGYVGEPEVTSATLLPDGW-------MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAP 453
+GYVG+P T+ +P + RTGDL DG L V R+ +K +GY++
Sbjct: 4078 RGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIEL 4137
Query: 454 AELEHLLLSHREVADAAVI 472
E+E L EV +AAV
Sbjct: 4138 GEIEARLHEQAEVREAAVA 4156
|
Length = 4334 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
+D+A IMY+SG+TG KGVM+TH N+ A VA PK V L +P HI L
Sbjct: 250 NDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILEL 307
|
Length = 696 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 38/167 (22%), Positives = 79/167 (47%), Gaps = 16/167 (9%)
Query: 384 LPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM------RTGDLCYIDEDGFLFIV 437
+PPG G+L + G + +GY+G P++T++ + D + RTGD+ +DG + +
Sbjct: 797 VPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYL 856
Query: 438 DRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMP------MAFVVRQP 491
R D +K +G ++ E++ + + +V A +A + ++V Q
Sbjct: 857 GRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQS 916
Query: 492 HSSLNEAEIMEFVARQVSPYKKIRRVAF--INAIPKSAAGKILRMEL 536
L+ + + + ++ P+ + V ++ +P SA GK+ R L
Sbjct: 917 GLPLDTSALQAQLRERLPPH--MVPVVLLQLDQLPLSANGKLDRKAL 961
|
Length = 1296 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 315 GAAPLGKDT---IMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSA 369
A L +D + A A + ++ + G TE+ P + R G G +
Sbjct: 297 AGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTD--RSGVIGLPAP 354
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD-LCYI 428
G E K+V P G + E+ ++GP + GY +PE+T+ +G+ R GD + ++
Sbjct: 355 GTELKLV--------PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFV 406
Query: 429 DED----GFLF 435
D D G +F
Sbjct: 407 DPDDPERGLVF 417
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
DVA I Y+SGTTG KGV+LTH NL A VA S S+ S V + +P HIY
Sbjct: 221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSD-VHISYLPLAHIY 275
|
Length = 651 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 155 KLAKLKHR--TILIDSPEFDSMTMSWNSKHELDRAKVCQSD---VAAIMYSSGTTGRVKG 209
K+ LK + + I FD MT K++ K+ D + +I+Y+SGT+G+ KG
Sbjct: 267 KIKDLKEKAKKLGISIILFDDMT-----KNKTTNYKIQNEDPDFITSIVYTSGTSGKPKG 321
Query: 210 VMLTHRNLTAAVAS-SFASSPKRVSPAVMLFTMPYFHIY 247
VML+++NL V S K+ +P L +P HIY
Sbjct: 322 VMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIY 360
|
Length = 746 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 23/200 (11%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI---ISPA 125
RV+++E R+ ++A L ++ LS +LS NSIE +L + + GV +SPA
Sbjct: 25 RVTYAEALRQVRAIAQALLDL-GLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPA 83
Query: 126 NPVNTE--SEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMSWN 179
+ ++ +++ L P FA A L ++ +++
Sbjct: 84 YSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPAIAFA 143
Query: 180 S------KHELDRA--KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASS 228
+ +D A V VA +++SG+TG K V+ THR L A +A +
Sbjct: 144 ALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFL 203
Query: 229 PKRVSPAVMLFTMPYFHIYG 248
+ P V++ +P+ H +G
Sbjct: 204 TEE--PPVLVDWLPWNHTFG 221
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 76/306 (24%), Positives = 117/306 (38%), Gaps = 65/306 (21%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
++ I SSGTTG+ T +++ +A S S+ R V + YG
Sbjct: 90 EEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQN-----AYGYG 144
Query: 249 LF---FCFRAAA--LMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG 303
LF A + T + + + + L+ +++F+ T A TP ++ +++ +G
Sbjct: 145 LFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG 204
Query: 304 YDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQA---YGLTESTAGVFRTVGPDEC 358
D SL+ GA P ++ +A YGLTE G EC
Sbjct: 205 IDPDKLSLKKGIFGAEPWSEEM----RKVIENRFGCKAFDIYGLTEGFG-----PGAGEC 255
Query: 359 RRWGSTGRLSAGLEA---KIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415
L + +IVDPETG+ LP G+ GEL I T L
Sbjct: 256 ---TERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVI------------------TTL 294
Query: 416 PDGWM-----RTGDLCYIDED------GFLFIVD---RLKDLIKYKGYQVAPAELEHLLL 461
M RTGD+ I D I R D++ +G V P+++E +LL
Sbjct: 295 TKEGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLL 354
Query: 462 SHREVA 467
EV
Sbjct: 355 QIPEVT 360
|
Length = 438 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
++ ++ G+TE+ T GP R G+ G + G E K+V G L E+
Sbjct: 365 RIRMMTGLGMTETAPSATFTTGPLS--RAGNIGLPAPGCEVKLVP--VGGKL------EV 414
Query: 393 SIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD-LCYIDED----GFLF 435
++GP + GY PE+T+ +G+ R+GD + ++D G +F
Sbjct: 415 RVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMF 462
|
Length = 614 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 511 YKKIRRVAFINAIPKSAAGKILRMELRKVA 540
Y R V F++ +PK+ +GKILR LR +A
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIA 30
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 30/188 (15%)
Query: 376 VDPETGDSL----------PPGKEGEL--SIRGPTIMK---GYVGEPEVTSATLLPDGWM 420
VD +TG+ + PG+ G L I ++ GYV E T+ + D +
Sbjct: 287 VDEDTGELIRDSDGLCIPCQPGEPGLLVGKIIQNDPLRRFDGYVNEGA-TNKKIARDVFK 345
Query: 421 R------TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAV--- 471
+ +GD+ +DE G+L+ DR D ++KG V+ E+E +L + + D V
Sbjct: 346 KGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGILSNVLGLEDVVVYGV 405
Query: 472 -IPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGK 530
+P + AG MA +V P ++ +A+ + PY + + + + + K+ K
Sbjct: 406 EVPGVEGRAG---MAAIVD-PERKVDLDRFSAVLAKSLPPYARPQFIRLLPEVDKTGTFK 461
Query: 531 ILRMELRK 538
+ + +L+K
Sbjct: 462 LQKTDLQK 469
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
D+A IMY+SGTTG KGVM TH +LTA +
Sbjct: 265 DLALIMYTSGTTGDPKGVMHTHGSLTAGI 293
|
Length = 700 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 81/382 (21%), Positives = 141/382 (36%), Gaps = 50/382 (13%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS-----PAVMLFTMPYFHI 246
V I++SSGTTG K + TH + + +A + P + + M + +
Sbjct: 119 ESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLL 178
Query: 247 YGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGY 304
Y F AL A + + F K V++ VT + P IV A G + +G
Sbjct: 179 YSAFLNGATLALYGGAPLGRGF-----GKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGL 233
Query: 305 DLSSLETVA-CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS 363
D S L A G A D + + + +++ G TE +G + +
Sbjct: 234 DWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQ----A 289
Query: 364 TGRLS-AGLEAKIV-----DPETGDSLPPGKEGELSIRGPTIMKG------------YVG 405
G S A L + V D P GE+++ P + Y G
Sbjct: 290 PGAFSTASLGTRFVLLNDNGVPYPDDQPCV--GEVALAPPMLGASDRLLNADHDKVYYKG 347
Query: 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHRE 465
P + + +P R GD+ G+ + R D + G + + E+E
Sbjct: 348 MP-MYGSKGMP--LRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVA 404
Query: 466 -VADAAVIPYPDEEAGQMPMAFVVR------QPHSSLNEAEIMEF---VARQVSPYKKIR 515
+A+ A + + G + + + EA +F + ++P K+
Sbjct: 405 GIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVS 464
Query: 516 RVAFINAIPKSAAGKILRMELR 537
RV + +P++A+ K+LR LR
Sbjct: 465 RVKIVPELPRNASNKLLRRVLR 486
|
Length = 499 |
| >gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 77/314 (24%), Positives = 112/314 (35%), Gaps = 76/314 (24%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR------NLTAAVASSFASSPK---RVSPAVMLF 239
V + V I SSGTTG+ V T NL A + P S LF
Sbjct: 75 VPKEQVVRIHASSGTTGKPTVVGYTQHDIDTWANLVARSLRAAGGRPGDKFHNSYGYGLF 134
Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
T GL + A L T V M + ++ + +F+ VTP + +++
Sbjct: 135 TG------GLGAHYGAERLGCTVVPMSGGQTEKQVQLIRDFKPDIIHVTPSYALNLAEEF 188
Query: 300 STDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
G D SSL+ GA P + + + + YGL+E +GP
Sbjct: 189 ERQGIDPAESSLKIGVFGAEPWTQAQRREIERRL-GIDALDIYGLSE-------VMGP-- 238
Query: 358 CRRWGSTGRLSAGLEAK-------------IVDPETGDSLPPGKEGELSIRGPTIMKGYV 404
G +E K I+DPETG+ LP G+ GEL
Sbjct: 239 -------GVAFECVETKDGPTIWEDHFYPEIIDPETGEPLPDGEIGELVF---------- 281
Query: 405 GEPEVTSAT--LLPDGWMRTGDL---------CYIDEDGFLFIVDRLKDLIKYKGYQVAP 453
T+ T LP RT DL D I R D + +G V P
Sbjct: 282 -----TTLTKEALPVIRYRTRDLTRLLPGTARTMRRIDR---ITGRSDDXLIIRGVNVFP 333
Query: 454 AELEHLLLSHREVA 467
+++E +L+ E++
Sbjct: 334 SQIEEILVKFPELS 347
|
PaaK catalyzes the first step in the aromatic degradation pathway, by converting phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has been found in proteobacteria as well as gram positive prokaryotes. The enzyme is specifically induced after aerobic growth in a chemically defined medium containing PA or phenylalanine (Phe) as the sole carbon source. PaaKs are members of the adenylate-forming enzyme (AFE) family. However, sequence comparison reveals divergent features of PaaK with respect to the superfamily, including a novel N-terminal sequence. Length = 424 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 65/288 (22%), Positives = 115/288 (39%), Gaps = 37/288 (12%)
Query: 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKF- 331
+ + +T + + A+ K G G +DLSSL T+ +PL + S
Sbjct: 322 RLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVK 381
Query: 332 PKVVLVQAYGLTE---------STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGD 382
V L G T+ T V+R G +CR G+ + D E G
Sbjct: 382 SDVWLASISGGTDICGCFVGGNPTLPVYR--GEIQCR--------GLGMAVEAFDEE-GK 430
Query: 383 SLPPGKEGELSIRG--PTIMKGYVGEPE---VTSA--TLLPDGWMRTGDLCYIDEDGFLF 435
+ G+ GEL P++ + +P+ A P W R GD I G +
Sbjct: 431 PVI-GEVGELVCTKPFPSMPLYFWNDPDGSRYRDAYFDTFPGVW-RHGDWIKITPHGGVI 488
Query: 436 IVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ-MPMAFVVRQPHSS 494
I R + G ++ AE+ ++ EV D+ V+ ++ + MP+ FV + +
Sbjct: 489 IYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDSLVVGQEVDDGDERMPL-FVKLREGVT 547
Query: 495 LNEA---EIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 539
L++A I + +SP + + IP + +GK + + ++K+
Sbjct: 548 LDDALVKRIRSAIRAALSPRHVPAEIIAVPDIPYTLSGKKVEVAVKKI 595
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 87/385 (22%), Positives = 151/385 (39%), Gaps = 49/385 (12%)
Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS-----PAVMLFTMPYFHIYGLFF 251
I++SSGTTG K + T A A ++A R P + + M + +Y
Sbjct: 361 ILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLL 420
Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
AL + + + F K V++ +VT P IV G D SS+
Sbjct: 421 NGATLALYNGSPLGRGFA-----KFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRC 475
Query: 312 VA-CGAAPLGKDT--IMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLS 368
G A D +M+ A P +++ G TE G F T + + + + +
Sbjct: 476 FGSTGEASSVDDYLWLMSRAGYKP---IIEYCGGTE-LGGGFVTGSLLQPQAFAAFSTPA 531
Query: 369 AGLEAKIVDPETGDSLP---PGKEGELSIRGPTIMKG-------------YVGEPEVTSA 412
G + I+D ++G+ P P GEL++ P + + G P
Sbjct: 532 MGCKLFILD-DSGNPYPDDAPCT-GELAL-FPLMFGASSTLLNADHYKVYFKGMPVFNGK 588
Query: 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLL-LSHREVADAAV 471
L R GD+ G+ R D + G +V+ E+E + + V + A
Sbjct: 589 IL-----RRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAA 643
Query: 472 IPYPDEEAG--QMPMAFVVRQPHSSLNEAEI--MEF---VARQVSPYKKIRRVAFINAIP 524
I P G Q+ +A V++ P S + F + ++++P K+ V + + P
Sbjct: 644 IGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFP 703
Query: 525 KSAAGKILRMELRKVAVPSGSSCRL 549
++A+ K++R LR+ S +L
Sbjct: 704 RTASNKVMRRVLRQQLAQELSRSKL 728
|
Length = 728 |
| >gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 97/559 (17%), Positives = 185/559 (33%), Gaps = 93/559 (16%)
Query: 62 INSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI 121
N +++ + R +A L + D ++ + + ++ L G+I
Sbjct: 2 GNGKPLYTLTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCLYAGLI 61
Query: 122 ISPANPVNTESEISRQIQLSNPVIAFA-------TSSVVHKL---------AKLKHRTIL 165
P P + S+Q+ I TS K K K L
Sbjct: 62 PVPVEPPLS-RAGSQQVGALLGSIKHYCGVAVALTSEACLKGLRSKTTGEILKFKGWPRL 120
Query: 166 IDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
+ T+ K D A I Y + G V GV +TH+ L +
Sbjct: 121 VWFVTE-IKTLKKPIKDWNPHLPPANLDTAYIEYKTSKEGSVMGVTVTHQALLT-HCQAL 178
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLK----MMLKAVEEF 280
+ + ++ + + G + C + +++ +K + + + ++
Sbjct: 179 KQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNPLLWFQIISKY 238
Query: 281 RVTHAAVTPPIV-VAMSKGGSTDGYDLSSLET--VACGAAPLGKDTIMAFASKFPKVVLV 337
++ V + A++ +LS L VA GA P + AF + F L
Sbjct: 239 KIKDTLVKSRDLHWALNAHRDQKDINLSCLRMLIVADGARPWSLASCQAFLNVFQSKGLS 298
Query: 338 QAYGLTESTAGVFR------TVGPDECR-------------RWGSTGRLSA--------- 369
TE++ R GP R R S + S+
Sbjct: 299 PCASSTEASTVANRRIGTRGYSGPIPGRGVLDMAALRHGVVRVDSEDKPSSLPLQDSGMV 358
Query: 370 --GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSAT-----------LLP 416
G + IV+P+T + GE+ + Y G +T T +
Sbjct: 359 MPGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTGMTKNTFEVFPNSSSDGIGE 418
Query: 417 DGWMRTGDLCYI----------DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL-SHRE 465
+ ++RTG L ++ + G LF+V + + ++ G + P ++E +L H
Sbjct: 419 NPYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSIDETLEVSGLRHNPDDIEATVLRVHPM 478
Query: 466 VADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRV-----AFI 520
+ + + E + V Q +E E ++V R ++ +V A +
Sbjct: 479 IYRGRIAVFSVTER----VVVVAEQ---RGSEEESFQWVPRVLNAILSEHQVIVYVVALV 531
Query: 521 --NAIPKSAAGKILRMELR 537
+PK+ G+ R E R
Sbjct: 532 PPGTLPKTPLGEKQRSETR 550
|
Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 170 EFDSMTMSWNSKHELDRAKVCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLT---AAVASSF 225
EF + S + + + + ++Y+SGTTG KGVML+H N+T A
Sbjct: 127 EFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHM 186
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
A I+Y+SGTTG KGV+L+ R + A A+A ++ + V++ +P FH++GL
Sbjct: 131 ALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADD----VLVHGLPLFHVHGL 184
|
Length = 471 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 42/184 (22%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP- 127
+S++E + LA+ L+++ + D N E I + S+G I S +P
Sbjct: 86 EISWAELRSQVARLAAALRDLG-VKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPD 144
Query: 128 VNTESEISR--QIQLSNPVIAFATSSVV------HKLAKLKH---------RTILIDS-- 168
E+ + R QI+ P + FA V + K+ +++
Sbjct: 145 FGVEAVLDRFGQIE---PKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYLS 201
Query: 169 -------PEFDSMTMSW----NSKHELDRAKVCQSDVAAIMYSSGTTGRVK-------GV 210
+F ++T+ W + L+ ++ I+YSSGTTG K G
Sbjct: 202 SDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIVHGAGGT 261
Query: 211 MLTH 214
+L H
Sbjct: 262 LLQH 265
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|131210 TIGR02155, PA_CoA_ligase, phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 72/288 (25%), Positives = 111/288 (38%), Gaps = 46/288 (15%)
Query: 194 VAAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF 250
V I SSGTTG+ V T ++ ++ VA S ++ R L Y YGLF
Sbjct: 77 VVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGR---PGDLIHNAYG--YGLF 131
Query: 251 -----FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
+ A L T V + + ++ +++F+ VTP ++ + + G D
Sbjct: 132 TGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGID 191
Query: 306 LS--SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS 363
+ SL+ GA P ++ + YGL+E +GP
Sbjct: 192 PAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLSE-------VIGPGVAMECVE 243
Query: 364 TGRLSAGLE----AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419
T E +I+DP TG+ LP G+EGEL T+ K LP
Sbjct: 244 TQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVF--TTLTK-----------EALPVIR 290
Query: 420 MRTGDLC-YIDEDGFLF-----IVDRLKDLIKYKGYQVAPAELEHLLL 461
RT DL + I R D++ +G V P +LE ++L
Sbjct: 291 YRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVIL 338
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions [Energy metabolism, Other]. Length = 422 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.98 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.96 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.92 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.89 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.85 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.76 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.38 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 99.15 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.74 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 98.2 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 98.18 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 98.04 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.88 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 94.78 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 84.59 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 84.06 |
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-83 Score=647.55 Aligned_cols=483 Identities=39% Similarity=0.635 Sum_probs=424.6
Q ss_pred cEEEECC-CCceecHHHHHHHHHHHHHHhHHhcC--CCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHH
Q 008895 59 VALINSV-TGLRVSFSEFTRRTNSLASYLQNVTR--LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135 (549)
Q Consensus 59 ~a~~~~~-~~~~~Ty~el~~~a~~~A~~L~~~~g--~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~ 135 (549)
++++... .|+.+||.|++.++.++|.+|.+ +| +++||+|+++++|+++++.+++||+.+|+++.+++|.++..++.
T Consensus 34 ~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~-~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~ 112 (537)
T KOG1176|consen 34 TSLVYQDSDGRELTYSELHDRCRRLASALSE-LGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIA 112 (537)
T ss_pred ceEEEecCCCcEEcHHHHHHHHHHHHHHHHh-cCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHH
Confidence 5665542 26999999999999999999997 65 89999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCeEEEEcCccHHHHhcC----CCeEEEecCC----chhhhhcccC------CCcccc-ccccCCCCEEEEEcc
Q 008895 136 RQIQLSNPVIAFATSSVVHKLAKL----KHRTILIDSP----EFDSMTMSWN------SKHELD-RAKVCQSDVAAIMYS 200 (549)
Q Consensus 136 ~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~------~~~~~~-~~~~~~~~~a~i~~T 200 (549)
+.++.+++++++++....+++... ...++.+... ...+...... ...... ......++++.++||
T Consensus 113 ~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~il~S 192 (537)
T KOG1176|consen 113 KQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDGIRPVSEDDTAAILYS 192 (537)
T ss_pred HHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCcccccCCCCCeEEEecC
Confidence 999999999999999988877532 2444444422 1111111000 000000 234456899999999
Q ss_pred CCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHH-HhhhccEEEEecCcCHHHHHHHHHH
Q 008895 201 SGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR-AAALMETAVVMQRFDLKMMLKAVEE 279 (549)
Q Consensus 201 SGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~-~l~~g~~~~~~~~~~~~~~~~~l~~ 279 (549)
|||||.||||.+||+++..+........ .....++.++.+|++|.+|+...+. .+..|.+++....++++.+++.+++
T Consensus 193 SGTTg~PKgV~lsHr~~~~~~~~~~~~~-~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~k 271 (537)
T KOG1176|consen 193 SGTTGLPKGVVLSHRNLIANTLSIKIGW-ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEK 271 (537)
T ss_pred CCCCCCCceEEEecHHHHHHHHHhhhcc-cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHH
Confidence 9999999999999999998877655555 3566899999999999999977776 4555555555667899999999999
Q ss_pred hceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCC
Q 008895 280 FRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR 359 (549)
Q Consensus 280 ~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~ 359 (549)
|++|+++++|+++..|++.+.....+++++|.+.+||+++++++.+++++.+|...+.+.||+||+++.++.+...++ .
T Consensus 272 ykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e-~ 350 (537)
T KOG1176|consen 272 YKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE-R 350 (537)
T ss_pred hCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc-C
Confidence 999999999999999999987777889999999999999999999999999987999999999999977776655555 6
Q ss_pred CCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcc
Q 008895 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDR 439 (549)
Q Consensus 360 ~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR 439 (549)
+.+++|+++++++..+.+ ++++.+++++.||||++|+.++.||+++|+.|++.|.++|||+|||+|+.|+||++|+.+|
T Consensus 351 k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR 429 (537)
T KOG1176|consen 351 KPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDR 429 (537)
T ss_pred cccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecc
Confidence 789999999998888888 9999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEE
Q 008895 440 LKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAF 519 (549)
Q Consensus 440 ~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~ 519 (549)
++|+||.+|++|+|.|||++|..||.|.||+||+++|+..|+.++|||+.+++...++++|++++++++++|+.|+.++|
T Consensus 430 ~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~F 509 (537)
T KOG1176|consen 430 SKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVF 509 (537)
T ss_pred hhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhccCeEEE
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred eCccCCCCCCcccHHHHHcccCcCCC
Q 008895 520 INAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 520 v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
+++||+|++|||.|+.||+++.....
T Consensus 510 vd~lPKs~~GKi~R~~lr~~~~~~~~ 535 (537)
T KOG1176|consen 510 VDELPKTPNGKILRRKLRDIAKKLGS 535 (537)
T ss_pred eccCCCCCcchHHHHHHHHHHHhccc
Confidence 99999999999999999999987543
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-79 Score=571.46 Aligned_cols=498 Identities=28% Similarity=0.376 Sum_probs=440.8
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
-|+++.+...+++. ||+.|.+....+.++||+|+...++++|++|.. +|+++||||++..+|+.+|+..+|||.+
T Consensus 50 ~Tigq~l~~~t~~v----~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~-lGL~kGDrVgvwgpN~~~w~l~~lA~A~ 124 (596)
T KOG1177|consen 50 ETIGQLLETTTERV----PDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLS-LGLKKGDRVGVWGPNSYEWVLCQLACAR 124 (596)
T ss_pred ccHHHHHHHHhhcc----CcceEEEEeeccchhhHHHHHHHHHHHHhhHHh-hcCCCCCEEEEecCChHHHHHHHHHHHH
Confidence 68999999999999 999999988788899999999999999999999 9999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH-----HHhc------------C------CCe-EEEecCC----
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-----KLAK------------L------KHR-TILIDSP---- 169 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~~------------~------~~~-~~~~~~~---- 169 (549)
+|.+.++++|++...+++..|++.+++++|..+.... .+.+ + ... ++..+..
T Consensus 125 AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~ 204 (596)
T KOG1177|consen 125 AGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLP 204 (596)
T ss_pred hceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCC
Confidence 9999999999999999999999999999998765322 1111 0 111 2322311
Q ss_pred ---chhhhhcccCCCc----cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecC
Q 008895 170 ---EFDSMTMSWNSKH----ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242 (549)
Q Consensus 170 ---~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~p 242 (549)
.+.++........ ........|++++.|.|||||||.|||+.+||.+++++.......+ +..+.+++++..|
T Consensus 205 Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~-g~~e~~~i~~~~P 283 (596)
T KOG1177|consen 205 GAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA-GYNEKHRICIPNP 283 (596)
T ss_pred CceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh-CcCcceEEEecCc
Confidence 1333332221110 1122345779999999999999999999999999999998888888 5777889999999
Q ss_pred hhhHHHH-HHHHHHhhhccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCC
Q 008895 243 YFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG 320 (549)
Q Consensus 243 l~~~~g~-~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~ 320 (549)
++|.+|. ...+.++..|++++++. .|++...++.|.++++|.++++|+++..+++.+.....+++++|..+.||++++
T Consensus 284 l~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s 363 (596)
T KOG1177|consen 284 LYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVS 363 (596)
T ss_pred hHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCC
Confidence 9999996 88899999999999965 599999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEcccCccccccceeccc-CcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCc
Q 008895 321 KDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV-GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399 (549)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~ 399 (549)
+++.+.+.....=..+...||+||+++..+... .+.......++|...++.+..++| +.|..++.|..|||+++|.+.
T Consensus 364 ~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~t 442 (596)
T KOG1177|consen 364 PELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGYST 442 (596)
T ss_pred HHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEEechh
Confidence 999999999774345788999999998766543 333344557999999999999999 899999999999999999999
Q ss_pred ccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCC
Q 008895 400 MKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEA 479 (549)
Q Consensus 400 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~ 479 (549)
+.|||++++.|.++...|.||+|||+|.+|++|+++++||.+|+|+.+|++|+|.|||+.|.+||.|.++.||+++|+..
T Consensus 443 Ml~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~ 522 (596)
T KOG1177|consen 443 MLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERL 522 (596)
T ss_pred heeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEeCCCCC--CCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 480 GQMPMAFVVRQPHSS--LNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 480 ~~~~~~~v~~~~~~~--~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++.++|+|-++.+.. ..+++|+++|+.++..|++|++|++++++|+|.+|||+|.++|++.+.
T Consensus 523 GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~ 587 (596)
T KOG1177|consen 523 GEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKG 587 (596)
T ss_pred cceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHHHHHHHHh
Confidence 999999999887654 588999999999999999999999999999999999999999999873
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=608.84 Aligned_cols=492 Identities=27% Similarity=0.406 Sum_probs=417.8
Q ss_pred CCHHHH-HhhcccCCCCCCCCCcEEEECCC---CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 38 ISAVDY-VSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 38 ~~~~~~-~~~~~~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
+|+... +....+... +++.|++...+ .+++||+||.+.++++|+.|++..|+ +||||++++|+.+++++++|
T Consensus 8 lN~~~n~~dr~~~~~~---~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~L 83 (528)
T COG0365 8 LNLALNALDRHLEADR---PDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALL 83 (528)
T ss_pred eechhhhhhhhhhccC---CCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHH
Confidence 566554 334443331 67888876522 27899999999999999999874678 99999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCC---------eEEEecC--CchhhhhcccCCCc
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH---------RTILIDS--PEFDSMTMSWNSKH 182 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~ 182 (549)
||+++|++.+|+.+.++++.+..++++++++++|+++....+...... .++++.. ..|.+.......
T Consensus 84 A~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~~~~-- 161 (528)
T COG0365 84 ATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASE-- 161 (528)
T ss_pred HHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhccCC--
Confidence 999999999999999999999999999999999998876654332111 1233322 233333322221
Q ss_pred cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccE
Q 008895 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMET 261 (549)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~ 261 (549)
.........+++++++|||||||+||+|+++|..++..............++|++++..+..|++|. +.+++++..|++
T Consensus 162 ~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat 241 (528)
T COG0365 162 KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGAT 241 (528)
T ss_pred CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCe
Confidence 2223336889999999999999999999999998887776666655456699999999999999999 448999999999
Q ss_pred EEEecC--c-CHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEc
Q 008895 262 AVVMQR--F-DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (549)
Q Consensus 262 ~~~~~~--~-~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~ 338 (549)
.++... + +++.+++.|+++++|.++.+|+.++.|.+.......++++||.+.+.|||++++.++++.+.+ ++.+.+
T Consensus 242 ~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d 320 (528)
T COG0365 242 TVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILD 320 (528)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEec
Confidence 998753 3 489999999999999999999999999998766667899999999999999999999999999 699999
Q ss_pred ccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecC--CcccccCCCccccccccCC
Q 008895 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP--TIMKGYVGEPEVTSATLLP 416 (549)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~--~~~~gy~~~~~~~~~~~~~ 416 (549)
.||+||+|.+...... ..+.++.|.|+||+++.++|++ +++++.|+ |+|+++.+ ++++|||++++.+.+++..
T Consensus 321 ~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~ 395 (528)
T COG0365 321 IYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFG 395 (528)
T ss_pred cccccccCccccCCCC---CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhh
Confidence 9999999954443222 4455666999999999999965 99999999 99999986 9999999999999988864
Q ss_pred CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCC
Q 008895 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLN 496 (549)
Q Consensus 417 ~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~ 496 (549)
. ||.|||.+++|+||++++.||.||+||+.|++|.+.|||++|.+||.|.||+||+.+|+..++.+++||+++++...+
T Consensus 396 ~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~ 474 (528)
T COG0365 396 R-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN 474 (528)
T ss_pred c-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH
Confidence 4 999999999999999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred --HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 497 --EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 497 --~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
.++|.+++++.+.+++.|+.|.++++||+|.||||.|+.||+.+.+
T Consensus 475 ~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~ 522 (528)
T COG0365 475 ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK 522 (528)
T ss_pred HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence 3577778888888899999999999999999999999999999874
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-77 Score=623.87 Aligned_cols=499 Identities=34% Similarity=0.528 Sum_probs=431.2
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
..++.+.+...++.+ |+++|+++.....++||+||.++++++|..|++ .|+++||+|+|+++|++++++++|||+
T Consensus 10 ~~~~~~~l~~~a~~~----~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~~v~~gdrVail~~N~~e~~~~~~a~~ 84 (534)
T COG0318 10 ELTLASLLERAARRN----PDRPALIFLGRGGRLTYRELDRRANRLAAALQA-LGVKPGDRVAILLPNSPEFLIAFLAAL 84 (534)
T ss_pred cccHHHHHHHHHHhC----CCceEEEEcCCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 379999999999999 999999987332349999999999999999999 889999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC---C--Ce-EEEecCC------chhhhhcccCCCccc
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL---K--HR-TILIDSP------EFDSMTMSWNSKHEL 184 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~--~~-~~~~~~~------~~~~~~~~~~~~~~~ 184 (549)
++|++++|++|.+...++.++++.+++++++++.......... . .. ....... .+.......... ..
T Consensus 85 ~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (534)
T COG0318 85 RAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGP-DA 163 (534)
T ss_pred hcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCCc-cc
Confidence 9999999999999999999999999999999998743333321 1 11 1111111 223332211111 11
Q ss_pred cccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCC-CCCCcEEEEecChhhHHHHHHHH-HHhhhccEE
Q 008895 185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLFTMPYFHIYGLFFCF-RAAALMETA 262 (549)
Q Consensus 185 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~g~~~~~-~~l~~g~~~ 262 (549)
......++++++++|||||||.||+|++||+++..+.......+.. ....|++++++|++|.+|+...+ ..+..|+++
T Consensus 164 ~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~ 243 (534)
T COG0318 164 DARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTL 243 (534)
T ss_pred ccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEE
Confidence 1112568999999999999999999999999999988887777733 68889999999999999996554 458889999
Q ss_pred EEec--CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCC-ceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 263 VVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS-LETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 263 ~~~~--~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~-lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
++.. .+++..++..+.++++|+++++|+++..++........++.+ +|.++.||+++++++.+++.+.|+...+.+.
T Consensus 244 v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~ 323 (534)
T COG0318 244 VLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEG 323 (534)
T ss_pred EeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEe
Confidence 9987 599999999999999999999999999999988776666665 9999999999999999999999966789999
Q ss_pred cCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 419 (549)
||+||++..++...........+++|+|+|+++++|+|+++++++| |++|||+|+||+++.|||++|+.|...|..+||
T Consensus 324 YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW 402 (534)
T COG0318 324 YGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGW 402 (534)
T ss_pred ecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCe
Confidence 9999999776664433301356777999999999999987776777 999999999999999999999999998865699
Q ss_pred eecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCC--CCCCH
Q 008895 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH--SSLNE 497 (549)
Q Consensus 420 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~--~~~~~ 497 (549)
|+|||+|++|++|++++.||.+|+|+.+|++|+|.+||.++.+||.|.+++|++++++.+++.++++++.+++ ...+.
T Consensus 403 ~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~ 482 (534)
T COG0318 403 LRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTA 482 (534)
T ss_pred eeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 34588
Q ss_pred HHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 498 AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 498 ~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++|.++++++++.+++|+.++++++||+|++||++|+.|++.+..
T Consensus 483 ~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 483 EELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred HHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998876
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-75 Score=619.25 Aligned_cols=531 Identities=43% Similarity=0.690 Sum_probs=450.5
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHH
Q 008895 6 PQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASY 85 (549)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~ 85 (549)
.+-.++.+.+++..++|.+..++.++|. ++.+++.+.+++. +.+ |+++|+++...+.++||.||.++++++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-~~~----~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~ 82 (560)
T PLN02574 9 TSHNNPPFWYSPETGIYSSKHPPVPLPS-DPNLDAVSFIFSH-HNH----NGDTALIDSSTGFSISYSELQPLVKSMAAG 82 (560)
T ss_pred CCCCCCccccCcCCeeecCCCCCCCCCC-CCCCCHHHHHhcC-ccc----CCCCEEEECCCCCcccHHHHHHHHHHHHHH
Confidence 3556778888888899998876555544 2346777777766 566 899999987556689999999999999999
Q ss_pred hHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEE
Q 008895 86 LQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL 165 (549)
Q Consensus 86 L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~ 165 (549)
|+++.|+++||+|+++++|+.++++++|||+++|++++|++|..+.+++.++++.+++++++++.+....+......++.
T Consensus 83 L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (560)
T PLN02574 83 LYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIG 162 (560)
T ss_pred HHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEe
Confidence 99647999999999999999999999999999999999999999999999999999999999998877766554444443
Q ss_pred ecC-----------CchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhc----cCCC
Q 008895 166 IDS-----------PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPK 230 (549)
Q Consensus 166 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~ 230 (549)
++. ..+..+...... ........++++++++|||||||.||+|+++|+++.+....... ....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~ 240 (560)
T PLN02574 163 VPENYDFDSKRIEFPKFYELIKEDFD--FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEY 240 (560)
T ss_pred cCcccccccCccCcccHHHHhhcCCc--ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhcccccccc
Confidence 321 112222211110 11122345688999999999999999999999999887765433 1112
Q ss_pred CCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC-CCCCCCC
Q 008895 231 RVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST-DGYDLSS 308 (549)
Q Consensus 231 ~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~-~~~~l~~ 308 (549)
....++++..+|++|.+|+ ..++.++..|+++++.+.+++..+++.|+++++|+++++|+++..+++.... ....+++
T Consensus 241 ~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~ 320 (560)
T PLN02574 241 PGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKS 320 (560)
T ss_pred CCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCcccc
Confidence 2356788999999999998 4456777889999999889999999999999999999999999999887543 3456889
Q ss_pred ceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCC
Q 008895 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK 388 (549)
Q Consensus 309 lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~ 388 (549)
+|.+++||+++++++++++.+.++++.+++.||+||++...............+++|.++++++++|+|++++++++.|+
T Consensus 321 lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~ 400 (560)
T PLN02574 321 LKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGN 400 (560)
T ss_pred ceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCC
Confidence 99999999999999999999999889999999999998655432222333456799999999999999988999999999
Q ss_pred cceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcce
Q 008895 389 EGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468 (549)
Q Consensus 389 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~ 468 (549)
.|||+|+|+.++.||+++++.+...|..+|||+|||+|+++++|++++.||+||+||++|++|++.+||.+|.+||+|.+
T Consensus 401 ~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~ 480 (560)
T PLN02574 401 CGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIID 480 (560)
T ss_pred CeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcce
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 469 AAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 469 ~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
++|++.+++..++.++++|+.+++...+.+++.++++++|++++.|+.++++++||+|++||++|+.|++++....
T Consensus 481 ~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~ 556 (560)
T PLN02574 481 AAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSV 556 (560)
T ss_pred EEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhcc
Confidence 9999999888888999999988766678899999999999999999999999999999999999999999986544
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-73 Score=607.55 Aligned_cols=498 Identities=21% Similarity=0.289 Sum_probs=410.9
Q ss_pred CCCCHHHHHh-hccc-CCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHH
Q 008895 36 APISAVDYVS-SLRA-TLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (549)
Q Consensus 36 ~~~~~~~~~~-~~~~-~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~ 109 (549)
..+|+...+. ++++ .+ |+++|++... .++++||+||.++++++|++|++ +|+++||+|+++++|+++++
T Consensus 85 ~~~N~~~~~l~~~~~~~~----~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrV~i~~pn~~e~v 159 (666)
T PLN02654 85 GKTNICYNCLDRNVEAGN----GDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKD-VGVKKGDAVVIYLPMLMELP 159 (666)
T ss_pred CEeeHHHHHHHHhhccCC----CCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHH
Confidence 3477755444 4444 46 9999998631 23689999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHH---------H----hc-----CCCe-EEEecCC-
Q 008895 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHK---------L----AK-----LKHR-TILIDSP- 169 (549)
Q Consensus 110 v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~----~~-----~~~~-~~~~~~~- 169 (549)
+++|||+++|++++|+++.++.+++..++++++++++|+++..... + .. .... ++..+..
T Consensus 160 ~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (666)
T PLN02654 160 IAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQL 239 (666)
T ss_pred HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccc
Confidence 9999999999999999999999999999999999999998764221 1 00 0001 1111110
Q ss_pred ---------------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHH-hhccCCCCCC
Q 008895 170 ---------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVS 233 (549)
Q Consensus 170 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~ 233 (549)
.|+++.... ..........++++++|+|||||||.||||+++|.+++..... ....+ ...+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-~~~~ 316 (666)
T PLN02654 240 AMKREDTKWQEGRDVWWQDVVPNY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-DYKP 316 (666)
T ss_pred cccccccccccCCcccHHHHhhcC--CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-CCCC
Confidence 011111100 0001112246789999999999999999999999998654433 33333 5678
Q ss_pred CcEEEEecChhhHHHH-HHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCC
Q 008895 234 PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDL 306 (549)
Q Consensus 234 ~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l 306 (549)
+|++++.+|+.|++|. +.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....++
T Consensus 317 ~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l 396 (666)
T PLN02654 317 TDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSR 396 (666)
T ss_pred CcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCCh
Confidence 8999999999999987 557889999999999863 578999999999999999999999999988653 234568
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCC--CcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcC
Q 008895 307 SSLETVACGAAPLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384 (549)
Q Consensus 307 ~~lr~v~~~Ge~l~~~~~~~~~~~~~~--~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 384 (549)
++||.++++|+++++++++++.+.++. +.+.+.||+||+++..+...........+++|+|++|++++|+| ++++++
T Consensus 397 ~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~ 475 (666)
T PLN02654 397 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEI 475 (666)
T ss_pred hheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCC
Confidence 899999999999999999999999853 68999999999987655432212234668999999999999999 678889
Q ss_pred CCCCcceEEEec--CCcccccCCCccccccccCC--CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHH
Q 008895 385 PPGKEGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLL 460 (549)
Q Consensus 385 ~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l 460 (549)
+.++.|||+|++ |+++.|||++++.+...+.. +|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|
T Consensus 476 ~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l 555 (666)
T PLN02654 476 EGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESAL 555 (666)
T ss_pred CCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHH
Confidence 888899999999 78999999999887766532 68999999999999999999999999999999999999999999
Q ss_pred HcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHH
Q 008895 461 LSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE---AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537 (549)
Q Consensus 461 ~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~ 537 (549)
.+||+|.+++|++++++..++.+++||+++++...+. ++|+++++++|++++.|+.|+++++||+|++||++|+.|+
T Consensus 556 ~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~ 635 (666)
T PLN02654 556 VSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 635 (666)
T ss_pred HhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHH
Confidence 9999999999999999888999999999987654443 4788999999999999999999999999999999999999
Q ss_pred cccCc
Q 008895 538 KVAVP 542 (549)
Q Consensus 538 ~~~~~ 542 (549)
+++..
T Consensus 636 ~~~~~ 640 (666)
T PLN02654 636 KIASR 640 (666)
T ss_pred HHHcC
Confidence 99865
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-73 Score=598.60 Aligned_cols=482 Identities=27% Similarity=0.379 Sum_probs=419.7
Q ss_pred CHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHc
Q 008895 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (549)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~ 118 (549)
++.+++.+.++++ |+++|+++. ++++||+||.++++++|++|.+ .|+++|++|+++++|++++++++|||+++
T Consensus 50 ~~~~~~~~~a~~~----pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~~~~~~~la~~~~ 122 (549)
T PRK07788 50 PFAGLVAHAARRA----PDRAALIDE--RGTLTYAELDEQSNALARGLLA-LGVRAGDGVAVLARNHRGFVLALYAAGKV 122 (549)
T ss_pred hHHHHHHHHHHHC----CCceEEEEC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 8899999999999 999999987 7899999999999999999999 89999999999999999999999999999
Q ss_pred CCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCeEEEecC----------CchhhhhcccCCCcc
Q 008895 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRTILIDS----------PEFDSMTMSWNSKHE 183 (549)
Q Consensus 119 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~~~~----------~~~~~~~~~~~~~~~ 183 (549)
|++++|+++.++.+++.+++++++++++|++++....+... ....+.... ..++++.....
T Consensus 123 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 198 (549)
T PRK07788 123 GARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSS---- 198 (549)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCC----
Confidence 99999999999999999999999999999998876655432 112221110 12223222111
Q ss_pred ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEE
Q 008895 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV 263 (549)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~ 263 (549)
........++.++++|||||||.||+|.++|+++...+......+ ....+++++..+|++|.+|+...+.++..|++++
T Consensus 199 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v 277 (549)
T PRK07788 199 TAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-PFRAGETTLLPAPMFHATGWAHLTLAMALGSTVV 277 (549)
T ss_pred CCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-CCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEE
Confidence 111122346789999999999999999999999998877766666 4677889999999999999977788999999999
Q ss_pred EecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccC
Q 008895 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (549)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG 341 (549)
+...+++..+++.++++++|+++++|+++..+++.... ....++++|.+++||+++++++.+++.+.+ +..+++.||
T Consensus 278 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG 356 (549)
T PRK07788 278 LRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYG 356 (549)
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccC
Confidence 98889999999999999999999999999999887654 455688999999999999999999999998 678999999
Q ss_pred ccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 008895 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (549)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (549)
+||++....... .......+++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++. . . .+|||+
T Consensus 357 ~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~ 430 (549)
T PRK07788 357 STEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLS 430 (549)
T ss_pred cchhchhhccCh-hhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c-cCCcee
Confidence 999986554322 12223457899999999999999 6788999999999999999999999998765 1 2 479999
Q ss_pred cCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 008895 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIM 501 (549)
Q Consensus 422 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 501 (549)
|||+|+++++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+.+++...+.++++
T Consensus 431 TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 510 (549)
T PRK07788 431 SGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIK 510 (549)
T ss_pred cCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888999999998877778889999
Q ss_pred HHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcc
Q 008895 502 EFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 539 (549)
Q Consensus 502 ~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~ 539 (549)
++++++|+.|++|..|+++++||+|++||++|++|+++
T Consensus 511 ~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 511 DYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred HHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 99999999999999999999999999999999999875
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-72 Score=590.05 Aligned_cols=513 Identities=41% Similarity=0.640 Sum_probs=440.6
Q ss_pred ceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEE
Q 008895 20 KTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAF 99 (549)
Q Consensus 20 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~ 99 (549)
..|++.+....+|. ..|+.+++.++++++ |+++|+++..+++++||.||.++++++|++|.+ .|+++||+|+
T Consensus 8 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~-~g~~~gd~V~ 79 (537)
T PLN02246 8 FIFRSKLPDIYIPN---HLPLHDYCFERLSEF----SDRPCLIDGATGRVYTYADVELLSRRVAAGLHK-LGIRQGDVVM 79 (537)
T ss_pred eEecCCCCCCCCCC---CCcHHHHHHHHHHhC----CCCeEEEecCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEE
Confidence 34555555544444 379999999999999 999999986556899999999999999999998 8999999999
Q ss_pred EEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCeEEEecCCc-----
Q 008895 100 VLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILIDSPE----- 170 (549)
Q Consensus 100 i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~~~----- 170 (549)
++++|+.++++++|||+++|++++|++|.++.+++..+++.++++++|+++.....+... ...++.++...
T Consensus 80 i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 159 (537)
T PLN02246 80 LLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLH 159 (537)
T ss_pred EECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCcee
Confidence 999999999999999999999999999999999999999999999999998776655432 23444444211
Q ss_pred hhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhcc---CCCCCCCcEEEEecChhhHH
Q 008895 171 FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---SPKRVSPAVMLFTMPYFHIY 247 (549)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~ 247 (549)
+.+...... .........++++++++|||||||.||+|+++|+++.......... ......+|+++..+|++|.+
T Consensus 160 ~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~ 237 (537)
T PLN02246 160 FSELTQADE--NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 237 (537)
T ss_pred HHHHhcCCC--CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHH
Confidence 222221111 0111223457899999999999999999999999998877654332 12467789999999999999
Q ss_pred HH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHH
Q 008895 248 GL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMA 326 (549)
Q Consensus 248 g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~ 326 (549)
++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++........++++|.+++||+++++++.+.
T Consensus 238 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~ 317 (537)
T PLN02246 238 SLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDA 317 (537)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHH
Confidence 98 45677889999999999999999999999999999999999999998877655667889999999999999999999
Q ss_pred HHHhCCCCcEEcccCccccccceecccC---cCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCccccc
Q 008895 327 FASKFPKVVLVQAYGLTESTAGVFRTVG---PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY 403 (549)
Q Consensus 327 ~~~~~~~~~l~~~yG~tE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy 403 (549)
+++.+++..+.+.||+||++.++..... .......+++|+|+++++++|+|++++++++.|+.|||+++|+.++.||
T Consensus 318 ~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY 397 (537)
T PLN02246 318 FRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGY 397 (537)
T ss_pred HHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccc
Confidence 9999988899999999999875543211 1112345789999999999999988899999999999999999999999
Q ss_pred CCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCcee
Q 008895 404 VGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMP 483 (549)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~ 483 (549)
+++++.+...+..++||+|||+|+++++|++++.||.||++|.+|++|+|.+||++|.++|+|.+++|++.++...++.+
T Consensus 398 ~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~ 477 (537)
T PLN02246 398 LNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVP 477 (537)
T ss_pred cCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCcee
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred EEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 484 MAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 484 ~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+++++..++...+.++++++++++|+.++.|..++++++||+|++||++|++|++++.+
T Consensus 478 ~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 478 VAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 99999887666778999999999999999999999999999999999999999998764
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=596.85 Aligned_cols=495 Identities=25% Similarity=0.323 Sum_probs=415.2
Q ss_pred CCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHH
Q 008895 36 APISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (549)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~ 115 (549)
.+.++.++|.+.++++ |+++|++++ ++++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|||
T Consensus 5 ~~~~~~~~~~~~~~~~----p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~v~~~n~~~~~~~~la~ 77 (563)
T PLN02860 5 SQAHICQCLTRLATLR----GNAVVTISG--NRRRTGHEFVDGVLSLAAGLLR-LGLRNGDVVAIAALNSDLYLEWLLAV 77 (563)
T ss_pred hhhHHHHHHHHHHHhc----CCceEEecC--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3479999999999999 999999876 7899999999999999999999 89999999999999999999999999
Q ss_pred HHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc-----C-CCe-EEEecCCc------hhhhhcccCC--
Q 008895 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK-----L-KHR-TILIDSPE------FDSMTMSWNS-- 180 (549)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~-----~-~~~-~~~~~~~~------~~~~~~~~~~-- 180 (549)
+++|++++|+++.++.+++.++++++++++++++......... . ... .+..+... +.+.......
T Consensus 78 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 157 (563)
T PLN02860 78 ACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQ 157 (563)
T ss_pred hhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhcc
Confidence 9999999999999999999999999999999998754221111 1 111 12222111 1111110000
Q ss_pred ---CccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhh
Q 008895 181 ---KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAA 257 (549)
Q Consensus 181 ---~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~ 257 (549)
..........++++++++|||||||.||+|.++|++++.+.......+ ...++|+++..+|++|.+++...+.++.
T Consensus 158 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~ 236 (563)
T PLN02860 158 RALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSALAMLM 236 (563)
T ss_pred CccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCCCEEEEecCchhhccHHHHHHHHH
Confidence 000111223568999999999999999999999999987766655555 4677899999999999999988889999
Q ss_pred hccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCc
Q 008895 258 LMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335 (549)
Q Consensus 258 ~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~ 335 (549)
.|+++++.+.+++..+++.|+++++|+++++|+++..|++.... ....++++|.+++||+++++++.+.+.+.|+++.
T Consensus 237 ~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 316 (563)
T PLN02860 237 VGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK 316 (563)
T ss_pred cCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCc
Confidence 99999999889999999999999999999999999999876432 2245789999999999999999999999998899
Q ss_pred EEcccCccccccceecccCcC---------------------CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEE
Q 008895 336 LVQAYGLTESTAGVFRTVGPD---------------------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI 394 (549)
Q Consensus 336 l~~~yG~tE~~~~~~~~~~~~---------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v 394 (549)
+++.||+||++..+....... ......++|+|+++++++|++++ +|+.|||+|
T Consensus 317 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v 390 (563)
T PLN02860 317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILT 390 (563)
T ss_pred eecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEE
Confidence 999999999976544321111 01112368999999999999844 678999999
Q ss_pred ecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEee
Q 008895 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474 (549)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~ 474 (549)
+|+.++.||+++++.+...+..+|||+|||+|++|++|++++.||+||+||.+|++|+|.+||++|.+||+|.+++|++.
T Consensus 391 ~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~ 470 (563)
T PLN02860 391 RGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGV 470 (563)
T ss_pred ecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEE
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCC--------------CCCHHHHHHHHHh-cCCCCCcccEEEEe-CccCCCCCCcccHHHHHc
Q 008895 475 PDEEAGQMPMAFVVRQPHS--------------SLNEAEIMEFVAR-QVSPYKKIRRVAFI-NAIPKSAAGKILRMELRK 538 (549)
Q Consensus 475 ~~~~~~~~~~~~v~~~~~~--------------~~~~~~i~~~l~~-~l~~~~~p~~i~~v-~~lP~t~~GKv~r~~l~~ 538 (549)
++...++.++++|++.++. ..+.+++.+++++ +|++|++|+.++++ ++||+|++|||+|++|++
T Consensus 471 ~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~ 550 (563)
T PLN02860 471 PDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRR 550 (563)
T ss_pred ecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHH
Confidence 9988889999999987541 3456789999987 59999999988765 789999999999999999
Q ss_pred ccCcCC
Q 008895 539 VAVPSG 544 (549)
Q Consensus 539 ~~~~~~ 544 (549)
++.+.-
T Consensus 551 ~~~~~~ 556 (563)
T PLN02860 551 EVLSHL 556 (563)
T ss_pred HHHHHH
Confidence 986543
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-72 Score=600.51 Aligned_cols=501 Identities=21% Similarity=0.282 Sum_probs=410.6
Q ss_pred CCCHH-HHHhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHH
Q 008895 37 PISAV-DYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL 111 (549)
Q Consensus 37 ~~~~~-~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~ 111 (549)
.+|+. +.+.++++++ |+++|+++. ...+++||+||.++++++|++|++ +|+++||+|+++++|+++++++
T Consensus 50 ~~n~~~~~l~~~~~~~----p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~n~~e~v~~ 124 (628)
T TIGR02316 50 RTNLCHNALDRHLDER----GEQLALVTVSSETGQERTLTYRQLHREVNVFASALRA-LGVGRGDRVLIYMPMIAEAVFA 124 (628)
T ss_pred EeeHHHHHHHHHhCcC----CCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHH
Confidence 36665 4555666677 999999863 124689999999999999999998 8999999999999999999999
Q ss_pred HHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH---------HHH----hc---CCCeEEEecCC------
Q 008895 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKL----AK---LKHRTILIDSP------ 169 (549)
Q Consensus 112 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~----~~---~~~~~~~~~~~------ 169 (549)
+|||+++|++++|+++.++.+++..++++++++++|+++... ..+ .. ....++.++..
T Consensus 125 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 204 (628)
T TIGR02316 125 MLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL 204 (628)
T ss_pred HHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCc
Confidence 999999999999999999999999999999999999976421 111 11 12234444321
Q ss_pred ------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecCh
Q 008895 170 ------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY 243 (549)
Q Consensus 170 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl 243 (549)
.+.++..... ..........++++++|+|||||||.||||+++|.++...............++|++++.+|+
T Consensus 205 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 283 (628)
T TIGR02316 205 IPGRDVDYAALRTQHE-DAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDV 283 (628)
T ss_pred ccCccccHHHHhhccc-cCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 1222211110 001111224568999999999999999999999999865443333322256778999999999
Q ss_pred hhHHHH-HHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEec
Q 008895 244 FHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGA 316 (549)
Q Consensus 244 ~~~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~G 316 (549)
.|..++ ..++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....++++||.+++||
T Consensus 284 ~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG 363 (628)
T TIGR02316 284 GWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAG 363 (628)
T ss_pred CeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEec
Confidence 999887 667889999999998763 578999999999999999999999998887543 2345689999999999
Q ss_pred CCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCc--CCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEE
Q 008895 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP--DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI 394 (549)
Q Consensus 317 e~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v 394 (549)
+++++++.+++++.+ +..+++.||+||++..++..... ......+++|.|++|++++|+|++++++++.|+.|||++
T Consensus 364 e~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v 442 (628)
T TIGR02316 364 EPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTV 442 (628)
T ss_pred CCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEE
Confidence 999999999999988 68899999999998544332211 112355789999999999999976899999999999999
Q ss_pred ecC---CcccccCCCcccccccc---CCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcce
Q 008895 395 RGP---TIMKGYVGEPEVTSATL---LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468 (549)
Q Consensus 395 ~g~---~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~ 468 (549)
+|| +.+.||+++++.+...+ ..++||+|||+|++|++|+++++||+||+||++|++|+|.|||++|.+||+|.+
T Consensus 443 ~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~e 522 (628)
T TIGR02316 443 VPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAE 522 (628)
T ss_pred ecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcce
Confidence 998 57789999987766544 247899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCceeEEEEEeCCCCCC--------CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 469 AAVIPYPDEEAGQMPMAFVVRQPHSSL--------NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 469 ~~vv~~~~~~~~~~~~~~v~~~~~~~~--------~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
|+|++++++..++.+++||+++++... ..++|+++++++|++|++|+.|+++++||+|++||++|+.|++++
T Consensus 523 a~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~ 602 (628)
T TIGR02316 523 VAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALA 602 (628)
T ss_pred EEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHH
Confidence 999999999889999999998765321 246899999999999999999999999999999999999999988
Q ss_pred CcCC
Q 008895 541 VPSG 544 (549)
Q Consensus 541 ~~~~ 544 (549)
....
T Consensus 603 ~~~~ 606 (628)
T TIGR02316 603 EGRD 606 (628)
T ss_pred cCCC
Confidence 6543
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-72 Score=601.07 Aligned_cols=501 Identities=22% Similarity=0.302 Sum_probs=403.9
Q ss_pred CCCCHHHHHhhc-ccC--CCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH
Q 008895 36 APISAVDYVSSL-RAT--LPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (549)
Q Consensus 36 ~~~~~~~~~~~~-~~~--~~~~~p~~~a~~~~~----~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~ 108 (549)
..+|....+.++ ++. + |+++|++... ..+++||+||.++++++|+.|++ +|+++||+|+++++|++++
T Consensus 56 ~~~n~~~~~l~~~~~~~~~----~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GDrV~i~~~n~~e~ 130 (647)
T PTZ00237 56 GELNTCYNVLDIHVKNPLK----RDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLN-LNISKNDNVLIYMANTLEP 130 (647)
T ss_pred CeeeHHHHHHHHhhcccCC----CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHH
Confidence 346666555444 433 5 8999998631 13689999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCcc---------HHHHh---cC---C-CeEEEecC----
Q 008895 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---------VHKLA---KL---K-HRTILIDS---- 168 (549)
Q Consensus 109 ~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~---~~---~-~~~~~~~~---- 168 (549)
++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+. .. . ..++.+..
T Consensus 131 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 210 (647)
T PTZ00237 131 LIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDIT 210 (647)
T ss_pred HHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcc
Confidence 99999999999999999999999999999999999999997521 11111 10 1 12332210
Q ss_pred -----------------Cchhhhhccc---CCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC
Q 008895 169 -----------------PEFDSMTMSW---NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228 (549)
Q Consensus 169 -----------------~~~~~~~~~~---~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~ 228 (549)
..|.++.... ............++++++|+|||||||.||||+++|.+.+..........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~ 290 (647)
T PTZ00237 211 SESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSI 290 (647)
T ss_pred cccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHh
Confidence 1122221110 00000112234678999999999999999999999998433333332222
Q ss_pred CCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC--cC----HHHHHHHHHHhceeeeeecHHHHHHHHhCCCC-
Q 008895 229 PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR--FD----LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST- 301 (549)
Q Consensus 229 ~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~--~~----~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~- 301 (549)
......+++++..|+.|+.+...++.++..|+++++.+. +. +..+++.|+++++|+++++|++++.|++....
T Consensus 291 ~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 370 (647)
T PTZ00237 291 IEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEA 370 (647)
T ss_pred cCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccc
Confidence 245667899999999998766678889999999998753 12 68899999999999999999999999875321
Q ss_pred ----CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEc
Q 008895 302 ----DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVD 377 (549)
Q Consensus 302 ----~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d 377 (549)
...++++||.+++||+++++++.+++++.+ ++.+.+.||+||++...+.... ......+++|+|++|++++|+|
T Consensus 371 ~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i~d 448 (647)
T PTZ00237 371 TIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSILS 448 (647)
T ss_pred cccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhccCC-CCCCCCCCCccCcCCceEEEEC
Confidence 334688999999999999999999999998 6899999999999865443221 2223447999999999999999
Q ss_pred CCCCCcCCCCCcceEEEecC---CcccccCCCccccccccCC-CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeCh
Q 008895 378 PETGDSLPPGKEGELSIRGP---TIMKGYVGEPEVTSATLLP-DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAP 453 (549)
Q Consensus 378 ~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~ 453 (549)
+++++++.|+.|||++++| +++.|||++++.+...|.. +|||+|||+|++|++|++++.||+||+||++|++|+|
T Consensus 449 -~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p 527 (647)
T PTZ00237 449 -EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQL 527 (647)
T ss_pred -CCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCH
Confidence 5889999999999999986 7899999999988877753 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC---CCCH----HHHHHHHHhcCCCCCcccEEEEeCccCCC
Q 008895 454 AELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS---SLNE----AEIMEFVARQVSPYKKIRRVAFINAIPKS 526 (549)
Q Consensus 454 ~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~---~~~~----~~i~~~l~~~l~~~~~p~~i~~v~~lP~t 526 (549)
.+||++|.+||.|.+++|++++++..++.+++||+++++. ..+. ++|+++++++|+++++|+.|+++++||+|
T Consensus 528 ~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T 607 (647)
T PTZ00237 528 NTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKT 607 (647)
T ss_pred HHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCC
Confidence 9999999999999999999999998899999999987432 2333 46678889999999999999999999999
Q ss_pred CCCcccHHHHHcccCcCC
Q 008895 527 AAGKILRMELRKVAVPSG 544 (549)
Q Consensus 527 ~~GKv~r~~l~~~~~~~~ 544 (549)
++|||+|+.|++++....
T Consensus 608 ~sGKi~R~~Lr~~~~~~~ 625 (647)
T PTZ00237 608 KTGKIPRQIISKFLNDSN 625 (647)
T ss_pred CCccEeHHHHHHHHcCCC
Confidence 999999999999986443
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-71 Score=586.71 Aligned_cols=518 Identities=39% Similarity=0.636 Sum_probs=440.0
Q ss_pred CceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEE
Q 008895 19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98 (549)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V 98 (549)
.-.|++.....+.|. ..|+.+.+.+.++++ |+++|+++...++.+||.||.+++.++|+.|++ .|+++|++|
T Consensus 12 ~~~~~~~~~~~~~~~---~~~~~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V 83 (546)
T PLN02330 12 EHIFRSRYPSVPVPD---KLTLPDFVLQDAELY----ADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRS-LGLRKGQVV 83 (546)
T ss_pred ceeeccCCCCCCCCC---CCcHHHHHhhhhhcC----CCccEEEecCCCCcccHHHHHHHHHHHHHHHHH-hCCCCCCEE
Confidence 445666666554433 378999999999999 999999976556899999999999999999999 899999999
Q ss_pred EEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecC------Cchh
Q 008895 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS------PEFD 172 (549)
Q Consensus 99 ~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~------~~~~ 172 (549)
+++++|+.+++++++||+++|++++|+++..+.+++.++++.++++++++++.....+......++.++. ..|.
T Consensus 84 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 163 (546)
T PLN02330 84 VVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWK 163 (546)
T ss_pred EEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCCCCCcccHH
Confidence 9999999999999999999999999999999999999999999999999999888777665555555542 2344
Q ss_pred hhhcccCCC-ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC-CCCCCCcEEEEecChhhHHHH-
Q 008895 173 SMTMSWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGL- 249 (549)
Q Consensus 173 ~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~g~- 249 (549)
++....... .........++++++++|||||||.||+|.++|+++..+........ ......++.+..+|++|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~ 243 (546)
T PLN02330 164 ELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGIT 243 (546)
T ss_pred HHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHH
Confidence 443322111 01112234568899999999999999999999999987665432222 112234678899999999988
Q ss_pred HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCC--CceEEEEecCCCCHHHHHHH
Q 008895 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS--SLETVACGAAPLGKDTIMAF 327 (549)
Q Consensus 250 ~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~--~lr~v~~~Ge~l~~~~~~~~ 327 (549)
..++.++..|+++++.+.+++..+++.++++++|++.++|+++..++.........+. ++|.+++||+++++++++++
T Consensus 244 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~ 323 (546)
T PLN02330 244 GICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAF 323 (546)
T ss_pred HHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHH
Confidence 4567888899999999999999999999999999999999999999886544333343 57899999999999999999
Q ss_pred HHhCCCCcEEcccCccccccceecccCcCC---CCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccC
Q 008895 328 ASKFPKVVLVQAYGLTESTAGVFRTVGPDE---CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYV 404 (549)
Q Consensus 328 ~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~ 404 (549)
.+.|+++++++.||+||++.+......... ....+++|.|+++++++|+|++++++++.|+.|||+|+|+.++.||+
T Consensus 324 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~ 403 (546)
T PLN02330 324 EAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYY 403 (546)
T ss_pred HHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhc
Confidence 999988999999999999865543211111 12346899999999999999888999999999999999999999999
Q ss_pred CCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeE
Q 008895 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484 (549)
Q Consensus 405 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~ 484 (549)
++++.+...+..+|||+|||+|+++++|++++.||.+|+++++|++|+|.+||++|.+++.|.+++|+++++...++.++
T Consensus 404 ~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 483 (546)
T PLN02330 404 NNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPA 483 (546)
T ss_pred cCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeE
Confidence 99999988888889999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 485 AFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 485 ~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
++|+..+....+.++++++++++|+.++.|+.++++++||+|++||++|++|++++.+.+
T Consensus 484 a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~~ 543 (546)
T PLN02330 484 ACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSIN 543 (546)
T ss_pred EEEEECCCCCCCHHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhhh
Confidence 999987766677889999999999999999999999999999999999999999997654
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-72 Score=588.12 Aligned_cols=487 Identities=22% Similarity=0.249 Sum_probs=404.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.+.++++ |+++|+.+.. .+++||+||.++++++|+.|.+ .+||+|+++++|++++++++|||++
T Consensus 19 ~~~~~~~~~~~~~~----p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~----~~gd~Val~~~n~~e~~~~~lA~~~ 89 (539)
T PRK06334 19 KTVLESFLKLCSEM----TTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK----YPDQHIGIMMPASAGAYIAYFATLL 89 (539)
T ss_pred CcHHHHHHHHHHhC----CCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh----ccCCeEEEEcCCchHHHHHHHHHHh
Confidence 58999999999999 9999998762 3689999999999999999997 3899999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCC-------CeEEEecCC----chhhhhccc----CCCc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-------HRTILIDSP----EFDSMTMSW----NSKH 182 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~~~~----~~~~ 182 (549)
+|++++|+++.++.+++.++++.+++++++++.+....+.+.. ..++.++.. .+.+..... ....
T Consensus 90 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (539)
T PRK06334 90 SGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFE 169 (539)
T ss_pred cCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCch
Confidence 9999999999999999999999999999999887665544321 123333211 001100000 0000
Q ss_pred ----cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhh
Q 008895 183 ----ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAA 257 (549)
Q Consensus 183 ----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~ 257 (549)
........++++++++|||||||.||+|.++|+++..+.......+ ....+|++++.+|++|.+|+ ...+.++.
T Consensus 170 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 248 (539)
T PRK06334 170 WLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-SPKEDDVMMSFLPPFHAYGFNSCTLFPLL 248 (539)
T ss_pred hhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCCCceEEEecchHhhhhhHHHHHHHHH
Confidence 0011234678999999999999999999999999998877666555 46778999999999999998 45678899
Q ss_pred hccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcE
Q 008895 258 LMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336 (549)
Q Consensus 258 ~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l 336 (549)
.|+++++.. .+++..+++.|+++++|+++++|+++..+++........++++|.+++||+++++++.+++.+.++++.+
T Consensus 249 ~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i 328 (539)
T PRK06334 249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQL 328 (539)
T ss_pred cCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeE
Confidence 999988875 5799999999999999999999999999988765555678999999999999999999999999988999
Q ss_pred EcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCcccccccc-C
Q 008895 337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL-L 415 (549)
Q Consensus 337 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~ 415 (549)
++.||+||++.++..... ......+++|+|++|++++|+|++++.+++.|+.|||+|+|++++.||+++++.+.... .
T Consensus 329 ~~~YG~TE~~~~~~~~~~-~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~ 407 (539)
T PRK06334 329 RQGYGTTECSPVITINTV-NSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELG 407 (539)
T ss_pred EecccccccCceEEeccC-CCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeC
Confidence 999999999876654322 22233467999999999999997788999999999999999999999999988654322 2
Q ss_pred CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcce------EEEEeecCCCCCceeEEEEEe
Q 008895 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD------AAVIPYPDEEAGQMPMAFVVR 489 (549)
Q Consensus 416 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~------~~vv~~~~~~~~~~~~~~v~~ 489 (549)
.++||+|||+|++|++|++++.||.||+||++|++|+|.|||++|.+||+|.+ ++|++.++. ...++++++.
T Consensus 408 ~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~~ 485 (539)
T PRK06334 408 GETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTTF 485 (539)
T ss_pred CceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCC--ceEEEEEEec
Confidence 36899999999999999999999999999999999999999999999999987 677776642 2344555543
Q ss_pred CCCCCCCHHHHHHHHHhc-CCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 490 QPHSSLNEAEIMEFVARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 490 ~~~~~~~~~~i~~~l~~~-l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
. .+.+++.++++++ ++.|+.|+.+.++++||+|++|||+|++|++++.
T Consensus 486 ~----~~~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 534 (539)
T PRK06334 486 P----TSISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAK 534 (539)
T ss_pred c----CChHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHH
Confidence 2 3567899999886 7899999999999999999999999999998754
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=594.68 Aligned_cols=498 Identities=23% Similarity=0.322 Sum_probs=414.0
Q ss_pred CCHHHH-HhhcccCCCCCCCCCcEEEECCC----CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHH
Q 008895 38 ISAVDY-VSSLRATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (549)
Q Consensus 38 ~~~~~~-~~~~~~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~ 112 (549)
+|+... +.++++++ |+++|++.... .+++||+||.++++++|+.|++ +|+++||+|+++++|++++++++
T Consensus 56 ~n~~~~~l~~~~~~~----p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~ 130 (625)
T TIGR02188 56 LNVSYNCVDRHLEAR----PDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKS-LGVKKGDRVAIYMPMIPEAAIAM 130 (625)
T ss_pred EEHHHHHHHHhhccC----CCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHH
Confidence 555554 44556667 99999986422 3589999999999999999999 99999999999999999999999
Q ss_pred HHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH---------H----HhcCC--Ce-EEEecCC-------
Q 008895 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------K----LAKLK--HR-TILIDSP------- 169 (549)
Q Consensus 113 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~----~~~~~--~~-~~~~~~~------- 169 (549)
|||+++|++++|+++.++.+++.+++++++++++|+++.... . +.... .. ++.++..
T Consensus 131 lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (625)
T TIGR02188 131 LACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWV 210 (625)
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCcc
Confidence 999999999999999999999999999999999999875321 1 11111 11 3333211
Q ss_pred -----chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChh
Q 008895 170 -----EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF 244 (549)
Q Consensus 170 -----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~ 244 (549)
.+.++..... .........++++++|+|||||||.||+|+++|++++..............++|++++..|++
T Consensus 211 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 288 (625)
T TIGR02188 211 EGRDVWWHDLMAKAS--AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVG 288 (625)
T ss_pred ccccccHHHHHhhcC--CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCch
Confidence 1222221111 011222356788999999999999999999999998765544333333567789999999999
Q ss_pred hHHHH-HHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecC
Q 008895 245 HIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAA 317 (549)
Q Consensus 245 ~~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge 317 (549)
|+.+. +.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+.... ...+++++|.++++|+
T Consensus 289 ~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~ 368 (625)
T TIGR02188 289 WITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGE 368 (625)
T ss_pred hhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecC
Confidence 99887 567889999999998753 4789999999999999999999999999876542 3346889999999999
Q ss_pred CCCHHHHHHHHHhCC--CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCC-CCCcceEEE
Q 008895 318 PLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP-PGKEGELSI 394 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~Gel~v 394 (549)
++++++++++.+.++ ++++++.||+||++..++...........+++|+|++|++++|+| +++++++ .|+.|||+|
T Consensus 369 ~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v 447 (625)
T TIGR02188 369 PINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVI 447 (625)
T ss_pred CCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEE
Confidence 999999999999884 378999999999987755432222234568899999999999999 7888898 899999999
Q ss_pred ec--CCcccccCCCccccccccCC--CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEE
Q 008895 395 RG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470 (549)
Q Consensus 395 ~g--~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~ 470 (549)
+| |+++.|||++++.+...+.. +|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+++
T Consensus 448 ~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~ 527 (625)
T TIGR02188 448 KQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAA 527 (625)
T ss_pred ccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEE
Confidence 99 68999999999877766543 789999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 471 VIPYPDEEAGQMPMAFVVRQPHSSLN---EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 471 vv~~~~~~~~~~~~~~v~~~~~~~~~---~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
|++.+++..++.+++||+++++...+ .++|+++++++|++++.|+.|+++++||+|++||++|+.|++++...
T Consensus 528 vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 528 VVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred EEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 99999988899999999988765544 36899999999999999999999999999999999999999998754
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-71 Score=590.80 Aligned_cols=498 Identities=29% Similarity=0.403 Sum_probs=416.0
Q ss_pred CCCCCHHHHHhhcccCCCCCCCCCcEEEEC------CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH
Q 008895 35 DAPISAVDYVSSLRATLPWRDDDTVALINS------VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (549)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~------~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~ 108 (549)
..+.|+.++|.+.++++ |+++|+++. ...+++||+||.+++.++|+.|++ +|+++||+|+++++|++++
T Consensus 22 ~~~~t~~~~l~~~a~~~----p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-~Gi~~gd~V~i~~~n~~e~ 96 (632)
T PRK07529 22 DLPASTYELLSRAAARH----PDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHS-LGVGPGDVVAFLLPNLPET 96 (632)
T ss_pred cCCCCHHHHHHHHHHHC----CCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHH
Confidence 34469999999999999 999999852 135799999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH-----HHHh----cC-CCe-EEEecCC--------
Q 008895 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLA----KL-KHR-TILIDSP-------- 169 (549)
Q Consensus 109 ~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~----~~-~~~-~~~~~~~-------- 169 (549)
++++|||+++| +++|+++.++.+++.++++.++++++|++.... .++. .. ... ++.++..
T Consensus 97 ~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (632)
T PRK07529 97 HFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKR 175 (632)
T ss_pred HHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccc
Confidence 99999999999 568999999999999999999999999975431 1211 11 111 2223221
Q ss_pred ---------------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCC
Q 008895 170 ---------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234 (549)
Q Consensus 170 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~ 234 (549)
.+.+.................++++++++|||||||.||+|.++|+++.++.......+ ...++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~~~~~ 254 (632)
T PRK07529 176 LAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-GLGPG 254 (632)
T ss_pred ccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-CCCCC
Confidence 12222221111101111233568999999999999999999999999988776666555 45788
Q ss_pred cEEEEecChhhHHHH-HHHHHHhhhccEEEEecCc---C---HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCC
Q 008895 235 AVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRF---D---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307 (549)
Q Consensus 235 ~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~---~---~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~ 307 (549)
+++++.+|++|.+++ ...+.++..|+++++.++. + ...+++.++++++|++.++|+++..|++... ...+++
T Consensus 255 d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~ 333 (632)
T PRK07529 255 DTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDIS 333 (632)
T ss_pred CEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCcc
Confidence 999999999999988 5678889999999987642 1 3688999999999999999999999987653 234688
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcC-CCC---Cc
Q 008895 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP-ETG---DS 383 (549)
Q Consensus 308 ~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~---~~ 383 (549)
++|.+++||+++++++.+++++.+ ++++++.||+||++.++.... .......+++|.|+|+++++++.. +++ ++
T Consensus 334 slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~-~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~ 411 (632)
T PRK07529 334 SLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNP-PDGERRIGSVGLRLPYQRVRVVILDDAGRYLRD 411 (632)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCC-ccccccCCCcccccCCceEEEEEcCCCCccccc
Confidence 999999999999999999999988 899999999999987665432 222335689999999999998531 445 78
Q ss_pred CCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcC
Q 008895 384 LPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH 463 (549)
Q Consensus 384 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~ 463 (549)
++.|+.|||+|+|++++.||++++. +...|..+|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+|
T Consensus 412 ~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~ 490 (632)
T PRK07529 412 CAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRH 490 (632)
T ss_pred CCCCCceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhC
Confidence 9999999999999999999998654 556666789999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCC-CCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 464 REVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVS-PYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 464 ~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~-~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
|+|.+++|++.++...++.++++|++.++...+.++++++++++++ .+++|+.|+++++||+|++|||+|++|++++..
T Consensus 491 p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~ 570 (632)
T PRK07529 491 PAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIR 570 (632)
T ss_pred CCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHH
Confidence 9999999999999888999999999988777888999999999997 579999999999999999999999999998765
Q ss_pred C
Q 008895 543 S 543 (549)
Q Consensus 543 ~ 543 (549)
.
T Consensus 571 ~ 571 (632)
T PRK07529 571 R 571 (632)
T ss_pred H
Confidence 3
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=588.59 Aligned_cols=499 Identities=23% Similarity=0.325 Sum_probs=412.8
Q ss_pred CCCHHH-HHhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHH
Q 008895 37 PISAVD-YVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL 111 (549)
Q Consensus 37 ~~~~~~-~~~~~~~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~ 111 (549)
.+|+.. .+.++++++ |+++|+++.. ..+++||+||.++++++|++|++ .|+++||+|+++++|+++++++
T Consensus 65 ~~n~~~~~l~~~~~~~----p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~ 139 (637)
T PRK00174 65 ELNVSYNCLDRHLKTR----GDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKS-LGVKKGDRVAIYMPMIPEAAVA 139 (637)
T ss_pred EeEHHHHHHHHhhccC----CCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHH
Confidence 356554 455666777 9999998642 23589999999999999999999 9999999999999999999999
Q ss_pred HHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH---------HH----hcC-CC-eEEEecCC-------
Q 008895 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KL----AKL-KH-RTILIDSP------- 169 (549)
Q Consensus 112 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~----~~~-~~-~~~~~~~~------- 169 (549)
+|||+++|++++|++|.++.+++.+++++++++++|+++.... .+ ... .. .++.++..
T Consensus 140 ~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (637)
T PRK00174 140 MLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWV 219 (637)
T ss_pred HHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcC
Confidence 9999999999999999999999999999999999999765321 11 111 11 12222211
Q ss_pred -----chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChh
Q 008895 170 -----EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF 244 (549)
Q Consensus 170 -----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~ 244 (549)
.+.++..... .........++++++|+|||||||.||+|+++|++++.+.............+|++++.+|++
T Consensus 220 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 297 (637)
T PRK00174 220 EGRDLWWHELVAGAS--DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVG 297 (637)
T ss_pred CCCcccHHHHHhhcC--CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCch
Confidence 1222221111 011122345688999999999999999999999998765544333322467789999999999
Q ss_pred hHHHH-HHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecC
Q 008895 245 HIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAA 317 (549)
Q Consensus 245 ~~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge 317 (549)
|..+. +.++.++..|+++++.+. +++..+++.|+++++|++.++|++++.|++.... ...++++||.+++||+
T Consensus 298 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge 377 (637)
T PRK00174 298 WVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGE 377 (637)
T ss_pred HhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCC
Confidence 99887 567889999999998752 4789999999999999999999999999876542 2346789999999999
Q ss_pred CCCHHHHHHHHHhCC--CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEe
Q 008895 318 PLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (549)
++++++.+++.+.++ ++++++.||+||++..+............+++|+|++|++++|+| +++++++.|+.|||+|+
T Consensus 378 ~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~ 456 (637)
T PRK00174 378 PINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIK 456 (637)
T ss_pred CCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEc
Confidence 999999999999884 378999999999987655432211223457899999999999999 77899999999999999
Q ss_pred c--CCcccccCCCccccccccC--CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEE
Q 008895 396 G--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAV 471 (549)
Q Consensus 396 g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~v 471 (549)
| |+++.|||++++.+...+. .+|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|
T Consensus 457 g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~V 536 (637)
T PRK00174 457 DPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAV 536 (637)
T ss_pred CCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 6899999999987776653 37899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 472 IPYPDEEAGQMPMAFVVRQPHSSLN---EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 472 v~~~~~~~~~~~~~~v~~~~~~~~~---~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
++.++...++.++++|++.++...+ .++|.++++++|+.++.|..|+++++||+|++||++|++|++++...
T Consensus 537 vg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 537 VGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred EeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 9999988899999999988765444 47899999999999999999999999999999999999999987654
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=580.15 Aligned_cols=496 Identities=28% Similarity=0.479 Sum_probs=417.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.+.|...++++ |+++|+++. ++.+||.||+++++++|++|.+..|+++||+|+++++|+.++++++|||++
T Consensus 24 ~~~~~~l~~~a~~~----p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~ 97 (562)
T PRK05677 24 PNIQAVLKQSCQRF----ADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMR 97 (562)
T ss_pred CcHHHHHHHHHHhC----CCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 58999999999988 999999987 789999999999999999998635999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----CCCeEEEecC-Cc----------------------
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDS-PE---------------------- 170 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~-~~---------------------- 170 (549)
+|++++|++|.++.+++.+++++++++++|++......+.+ .+...+.+.. .+
T Consensus 98 ~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (562)
T PRK05677 98 AGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVP 177 (562)
T ss_pred cCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhcccccc
Confidence 99999999999999999999999999999998765443322 1222221110 00
Q ss_pred ---------hhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCC--CCCCCcEEEE
Q 008895 171 ---------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP--KRVSPAVMLF 239 (549)
Q Consensus 171 ---------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~ 239 (549)
+.+........ ........+++.++++|||||||.||+|+++|+++..........+. .....+++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 256 (562)
T PRK05677 178 AYHLPQAVKFNDALAKGAGQ-PVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIA 256 (562)
T ss_pred ccCCcccccHHHHHhcCCCC-CCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEE
Confidence 00000000000 01112235689999999999999999999999999876654443321 1223468899
Q ss_pred ecChhhHHHH-HHHHHHhhhccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecC
Q 008895 240 TMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAA 317 (549)
Q Consensus 240 ~~pl~~~~g~-~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge 317 (549)
.+|++|.+++ ...+..+..|...++.. ++++..+++.|+++++|+++++|+++..++.........++++|.+++||+
T Consensus 257 ~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~ 336 (562)
T PRK05677 257 PLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGM 336 (562)
T ss_pred cCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCc
Confidence 9999999998 45666777787766654 578999999999999999999999999998765544556789999999999
Q ss_pred CCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecC
Q 008895 318 PLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~ 397 (549)
++++++.+.|.+.+ ++++++.||+||++.++.... ......+++|+|++++.++|+| ++++.++.|+.|||+|+|+
T Consensus 337 ~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~--~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~ 412 (562)
T PRK05677 337 ALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNP--SQAIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGP 412 (562)
T ss_pred cCCHHHHHHHHHHc-CCCeeccCCccccCcceeecC--ccCCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeEEEEecC
Confidence 99999999999987 789999999999987665432 2233557899999999999999 5688999999999999999
Q ss_pred CcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCC
Q 008895 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477 (549)
Q Consensus 398 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~ 477 (549)
.++.||+++++.+...|..+|||+|||+|+++++|.+++.||++|+++++|++|+|.+||++|.++|+|.+++|+++++.
T Consensus 413 ~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~ 492 (562)
T PRK05677 413 QVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDE 492 (562)
T ss_pred ccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCc
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 478 EAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 478 ~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
..++.++++++..++...+.++++++++++|++|++|..++++++||+|++||++|++|+++++.+-
T Consensus 493 ~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~~ 559 (562)
T PRK05677 493 KSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKA 559 (562)
T ss_pred cCCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHhc
Confidence 8888999999887666678899999999999999999999999999999999999999999776543
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-70 Score=576.13 Aligned_cols=496 Identities=26% Similarity=0.424 Sum_probs=424.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCC----CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
.++.+.+.+.++.+ |+++|+++... .+.+||.||.++++++|++|++ .|+++|++|+++++|++++++++|
T Consensus 24 ~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~Val~~~n~~e~~~~~l 98 (547)
T PRK13295 24 RTINDDLDACVASC----PDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLAR-LGVGRGDVVSCQLPNWWEFTVLYL 98 (547)
T ss_pred CCHHHHHHHHHHHC----CCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHH
Confidence 68999999999999 99999987521 2799999999999999999998 899999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCcc-----HHHHhc----C-CC-eEEEecC---Cchhhhhccc-
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV-----VHKLAK----L-KH-RTILIDS---PEFDSMTMSW- 178 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~~----~-~~-~~~~~~~---~~~~~~~~~~- 178 (549)
||+++|++++|++|.++.+++.++++.++++++++++.. .+.+.. . .. .++.++. ..+.++....
T Consensus 99 a~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (547)
T PRK13295 99 ACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPA 178 (547)
T ss_pred HHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHHHHhhCCc
Confidence 999999999999999999999999999999999998753 111111 1 11 2333332 1233332111
Q ss_pred ----CCC-ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHH
Q 008895 179 ----NSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFC 252 (549)
Q Consensus 179 ----~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~ 252 (549)
... .........++++++++|||||||.||+|.++|+++..+.......+ ...+++++++.+|++|.+++ ..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~g~~~~~ 257 (547)
T PRK13295 179 WEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-GLGADDVILMASPMAHQTGFMYGL 257 (547)
T ss_pred cccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-CCCCCCeEEEecCchhhhhHHHHH
Confidence 000 00111234568899999999999999999999999988887766655 46778999999999999887 567
Q ss_pred HHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCC
Q 008895 253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332 (549)
Q Consensus 253 ~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~ 332 (549)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..+..........++++|.+++||+++++++.+++.+.+
T Consensus 258 ~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~- 336 (547)
T PRK13295 258 MMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL- 336 (547)
T ss_pred HHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-
Confidence 8889999999998888999999999999999999999999999887766666788999999999999999999999998
Q ss_pred CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCcccccc
Q 008895 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412 (549)
Q Consensus 333 ~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~ 412 (549)
++++++.||+||++.+..............++|+|++++.++|+| +++++++.|+.|||+|+|+.++.||+++++.+..
T Consensus 337 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~ 415 (547)
T PRK13295 337 GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT 415 (547)
T ss_pred CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccccCCcccccc
Confidence 899999999999987655433222233456889999999999999 5688999999999999999999999999988876
Q ss_pred ccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCC
Q 008895 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH 492 (549)
Q Consensus 413 ~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~ 492 (549)
. .+|||+|||+|+++++|.+++.||.+|++|.+|++|+|.+||++|.++++|.+++|+++++...++.+++++++.++
T Consensus 416 ~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~ 493 (547)
T PRK13295 416 D--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPG 493 (547)
T ss_pred C--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCC
Confidence 5 57899999999999999999999999999999999999999999999999999999999988888899999998876
Q ss_pred CCCCHHHHHHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 493 SSLNEAEIMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 493 ~~~~~~~i~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
...+.+++.+++++ +++++++|..++++++||+|++||++|++|++++.+.
T Consensus 494 ~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~~ 545 (547)
T PRK13295 494 QSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRGE 545 (547)
T ss_pred CCCCHHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhcC
Confidence 66677899999986 7999999999999999999999999999999988654
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=516.69 Aligned_cols=495 Identities=27% Similarity=0.378 Sum_probs=433.4
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.+.++|+++ ||++|++++ ++.+||+||.++++++|..|++ +|+++||+|.+..+|..+|++++||+++
T Consensus 28 ~~l~d~L~~~A~~~----pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~-lGi~~Gd~vlvQLpN~~ef~~~~FALlr 100 (542)
T COG1021 28 RTLTDILTDHAARY----PDRIAVIDG--ERRLSYAELDQRADRLAAGLRR-LGIKPGDTVLVQLPNVAEFYITFFALLR 100 (542)
T ss_pred CcHHHHHHHHHhhc----CCceEEecC--cccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCchHHHHHHHHHHHH
Confidence 78999999999999 999999998 7889999999999999999999 9999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCcc--------HHHH-hcC-CCeEEEecC-Cc-h--hhhhcccCCCcc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV--------VHKL-AKL-KHRTILIDS-PE-F--DSMTMSWNSKHE 183 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--------~~~~-~~~-~~~~~~~~~-~~-~--~~~~~~~~~~~~ 183 (549)
+|+.+|..=|.-...+|....+..+++..|.+... ...+ .+. ..+.+.+.+ .+ . ............
T Consensus 101 lGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a~~~ 180 (542)
T COG1021 101 LGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLF 180 (542)
T ss_pred cCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCccccC
Confidence 99999998888889999999999999999987642 1111 121 234443332 21 1 111111111111
Q ss_pred ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH--HHHHHHhhhccE
Q 008895 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL--FFCFRAAALMET 261 (549)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~--~~~~~~l~~g~~ 261 (549)
.+....++++++++..+.||||+||.|..||+....+.....+.. ++....+.++.+|..|.+-+ -..++.++.|++
T Consensus 181 ~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~ 259 (542)
T COG1021 181 TPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-GFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGT 259 (542)
T ss_pred CcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-CcCccceEEEecccccCCCCCCcchhheeeeccE
Confidence 223445778899999999999999999999999998888887777 57889999999999999887 568899999999
Q ss_pred EEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccC
Q 008895 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (549)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG 341 (549)
+|+.+..+++..+.+|+++++|+...+|.+...|++..+....+++|||.+-+||..+++++.+++...+ ++.+.+.||
T Consensus 260 VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFG 338 (542)
T COG1021 260 VVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFG 338 (542)
T ss_pred EEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhh
Confidence 9999999999999999999999999999999999999988888999999999999999999999999999 999999999
Q ss_pred ccccccceecccCcCCCCCCCcccccc-CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCee
Q 008895 342 LTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420 (549)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~ 420 (549)
|.|.-. .+.-..+.......+-|+|+ |.-+++|+| ++|+++++|++|+|..+||+..+|||+.|+.+...|+.+|+|
T Consensus 339 MAEGLv-nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFY 416 (542)
T COG1021 339 MAEGLV-NYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFY 416 (542)
T ss_pred hhhhhh-cccccCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCce
Confidence 999533 22222333333446789998 888999999 889999999999999999999999999999999999999999
Q ss_pred ecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHH
Q 008895 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEI 500 (549)
Q Consensus 421 ~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i 500 (549)
+|||+++++++|++.+.||.||+|+.+|++|...|||+.|..||.|.+|++|..+|.-.||+.++||+.++.. .+..++
T Consensus 417 rsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~-~~~~ql 495 (542)
T COG1021 417 RSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPP-LRAAQL 495 (542)
T ss_pred ecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCC-CCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998654 788999
Q ss_pred HHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 501 MEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 501 ~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+++|++ .+..|++|..|.+++.+|.|+-||||+++|++.+....
T Consensus 496 r~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~~ 540 (542)
T COG1021 496 RRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASRL 540 (542)
T ss_pred HHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhhhc
Confidence 999977 49999999999999999999999999999999876554
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-70 Score=571.84 Aligned_cols=487 Identities=27% Similarity=0.426 Sum_probs=424.2
Q ss_pred CHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHc
Q 008895 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (549)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~ 118 (549)
.+.+.+.+.++.+ |+++|++++ ++.+||.||.++++++|+.|+++.|+++|++|+++++|+++++++++||+++
T Consensus 3 ~~~~~~~~~a~~~----p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~ 76 (496)
T PRK06839 3 GIAYWIEKRAYLH----PDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKV 76 (496)
T ss_pred cHHHHHHHHHHHC----CCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 6788999999999 999999987 8999999999999999999985479999999999999999999999999999
Q ss_pred CCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCC-----CeEEEecCCchhhhhcccCCCccccccccCCCC
Q 008895 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD 193 (549)
Q Consensus 119 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (549)
|++++|+++..+.+++..+++.++++++++++.......... ...+.+. ++.+...... .......+++
T Consensus 77 G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~ 150 (496)
T PRK06839 77 ECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISIT--SLKEIEDRKI----DNFVEKNESA 150 (496)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEec--chHhhhccCC----CCCCCCCCCC
Confidence 999999999999999999999999999999987765544321 1222222 2222221111 1112345678
Q ss_pred EEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHH
Q 008895 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKM 272 (549)
Q Consensus 194 ~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~ 272 (549)
+++++|||||||.||+|.++|.++..+.......+ ....++++++.+|++|.+|+ ...+.++..|+++++.+.+++..
T Consensus 151 ~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~ 229 (496)
T PRK06839 151 SFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTK 229 (496)
T ss_pred cEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-CCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHH
Confidence 99999999999999999999999977665555555 46778899999999999988 45577888999999888899999
Q ss_pred HHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecc
Q 008895 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (549)
Q Consensus 273 ~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~ 352 (549)
+++.++++++|++.++|++++.+++........++++|.+++||+++++++.+.+.+. ++++.+.||+||++..++..
T Consensus 230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~ 307 (496)
T PRK06839 230 ALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFML 307 (496)
T ss_pred HHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEec
Confidence 9999999999999999999999998876666778999999999999999999999986 78999999999998765543
Q ss_pred cCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCC
Q 008895 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432 (549)
Q Consensus 353 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g 432 (549)
.........+++|+|+++++++|+|+ +++.++.|+.|||+|+|+.++.||+++++.+...+ .+|||+|||+|+++++|
T Consensus 308 ~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g 385 (496)
T PRK06839 308 SEEDARRKVGSIGKPVLFCDYELIDE-NKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDG 385 (496)
T ss_pred ccccccccCCCCcccCCCceEEEECC-CcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCC
Confidence 33233345679999999999999994 55669999999999999999999999999888776 58999999999999999
Q ss_pred eEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Q 008895 433 FLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYK 512 (549)
Q Consensus 433 ~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~ 512 (549)
++++.||.+|+|+.+|.+|+|.+||++|.++|+|.+++|++.++...++.++++|+.++....+.++++++++++|+.++
T Consensus 386 ~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 465 (496)
T PRK06839 386 FVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYK 465 (496)
T ss_pred cEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCCC
Confidence 99999999999999999999999999999999999999999999888899999999887777788999999999999999
Q ss_pred cccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 513 KIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 513 ~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+|..+++++++|+|++||++|++|+++..+
T Consensus 466 ~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 466 IPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred CCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 999999999999999999999999988754
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-70 Score=574.25 Aligned_cols=482 Identities=25% Similarity=0.346 Sum_probs=413.4
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.+.++++ |+++|+++. ++++||.||.++++++|++|.+ .|+++|++|+++++|+.++++++|||++
T Consensus 43 ~~~~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 115 (537)
T PRK13382 43 MGPTSGFAIAAQRC----PDRPGLIDE--LGTLTWRELDERSDALAAALQA-LPIGEPRVVGIMCRNHRGFVEALLAANR 115 (537)
T ss_pred CCHHHHHHHHHHhC----CCCeEEEeC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCcHHHHHHHHHHHH
Confidence 68999999999999 999999987 6799999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC------CCeEEEecCC----chhhhhcccCCCcccccc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP----EFDSMTMSWNSKHELDRA 187 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 187 (549)
+|++++|+++.++.+++.+++++++++++|++......+... ....+.++.. .++.+..... . ...
T Consensus 116 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 191 (537)
T PRK13382 116 IGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHA---G-QRP 191 (537)
T ss_pred cCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhccC---c-CCC
Confidence 999999999999999999999999999999998765544321 1112222211 1222211111 0 011
Q ss_pred ccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC
Q 008895 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR 267 (549)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~ 267 (549)
...+++.++++|||||||.||+|.++|+++..........+ ....+++++..+|++|.+|+...+.++..|+++++...
T Consensus 192 ~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~ 270 (537)
T PRK13382 192 EPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-PWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRR 270 (537)
T ss_pred CCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-CCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCC
Confidence 22457889999999999999999999998887777666555 35677889999999999999888889999999999888
Q ss_pred cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcccc
Q 008895 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (549)
Q Consensus 268 ~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 345 (549)
+++..+++.|+++++|++.++|+++..+++.... ...+++++|.+++||+++++++++.|.+.+ +..+++.||+||+
T Consensus 271 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~ 349 (537)
T PRK13382 271 FDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEA 349 (537)
T ss_pred cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeccccccc
Confidence 9999999999999999999999999999876432 233457899999999999999999999999 5679999999999
Q ss_pred ccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCce
Q 008895 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425 (549)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~ 425 (549)
+.++.... .......+++|+|++++.++|+| +++++++.|+.|||+++|++++.||+ ++.+. .+ .+|||+|||+
T Consensus 350 ~~~~~~~~-~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~-~~-~~g~~~TGDl 423 (537)
T PRK13382 350 GMIATATP-ADLRAAPDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTK-DF-HDGFMASGDV 423 (537)
T ss_pred CcceecCh-hHhccCCCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCcc--ccchh-hc-cCCCEeeCce
Confidence 87665432 22234567999999999999999 56889999999999999999999998 44443 34 3799999999
Q ss_pred EEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH
Q 008895 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVA 505 (549)
Q Consensus 426 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~ 505 (549)
++++++|++++.||+||+||.+|++|+|.+||.+|.++|+|.+++|++.++...++.++++|++.+....+.++++++++
T Consensus 424 ~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~ 503 (537)
T PRK13382 424 GYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVR 503 (537)
T ss_pred EEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888889999999987766677899999999
Q ss_pred hcCCCCCcccEEEEeCccCCCCCCcccHHHHHc
Q 008895 506 RQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538 (549)
Q Consensus 506 ~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~ 538 (549)
++|+.+++|..++++++||+|++||++|++|++
T Consensus 504 ~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 504 DNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred HhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 999999999999999999999999999999975
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-70 Score=574.63 Aligned_cols=493 Identities=31% Similarity=0.498 Sum_probs=426.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhc-CCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~-g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
.++.+.|...+.++ |+++|+++. ++++||+||.+++.++|+.|.+ . |+++|++|+++++|+++++++++||+
T Consensus 10 ~tl~~~l~~~a~~~----~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~-~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 82 (546)
T PRK08314 10 TSLFHNLEVSARRY----PDKTAIVFY--GRAISYRELLEEAERLAGYLQQ-ECGVRKGDRVLLYMQNSPQFVIAYYAIL 82 (546)
T ss_pred CCHHHHHHHHHHHc----CCCcceeec--CceecHHHHHHHHHHHHHHHHH-hhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 78999999999999 999999987 7899999999999999999998 7 99999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCe-EEEecCC----------------------
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDSP---------------------- 169 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~-~~~~~~~---------------------- 169 (549)
++|++++|++|..+.+++.++++.+++++++++......+... ... .+.....
T Consensus 83 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (546)
T PRK08314 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQ 162 (546)
T ss_pred HcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccc
Confidence 9999999999999999999999999999999998776654421 111 1111100
Q ss_pred --------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEec
Q 008895 170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM 241 (549)
Q Consensus 170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (549)
.+.+...... ........++++++++|||||||.||+|.++|++++.++....... .....|++++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~ 238 (546)
T PRK08314 163 ALAPGGVVAWKEALAAGL---APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-NSTPESVVLAVL 238 (546)
T ss_pred cccccccccHHHHhcccC---CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCceEEEEc
Confidence 0111111000 1112234568999999999999999999999999998888766665 467889999999
Q ss_pred ChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCC
Q 008895 242 PYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG 320 (549)
Q Consensus 242 pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~ 320 (549)
|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..++.........++++|.+++||++++
T Consensus 239 p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~ 318 (546)
T PRK08314 239 PLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMP 318 (546)
T ss_pred CchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCC
Confidence 99999998 56778999999999999899999999999999999999999999988766555566889999999999999
Q ss_pred HHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcc
Q 008895 321 KDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (549)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~ 400 (549)
+++.+++.+.+ +.++++.||+||++....... ......+++|.|+++++++|+|+++++.++.|+.|||+|+|++++
T Consensus 319 ~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~--~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~ 395 (546)
T PRK08314 319 EAVAERLKELT-GLDYVEGYGLTETMAQTHSNP--PDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVF 395 (546)
T ss_pred HHHHHHHHHHc-CCcEEecccccccccceecCC--CcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchh
Confidence 99999999998 789999999999987655422 222345789999999999999988899999999999999999999
Q ss_pred cccCCCccccccccCC---CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCC
Q 008895 401 KGYVGEPEVTSATLLP---DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477 (549)
Q Consensus 401 ~gy~~~~~~~~~~~~~---~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~ 477 (549)
.||+++++.+...|.. ++||+|||+|+++++|.+++.||+||+++++|++|+|.+||++|.++|+|.+++|++.++.
T Consensus 396 ~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~ 475 (546)
T PRK08314 396 KGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDP 475 (546)
T ss_pred ccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCc
Confidence 9999999988877642 3599999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCC--CCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 478 EAGQMPMAFVVRQPHS--SLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 478 ~~~~~~~~~v~~~~~~--~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
..++.++++++..+.. ..+.+++.++++++|+++++|..++++++||+|.+||++|++|++......
T Consensus 476 ~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~~~ 544 (546)
T PRK08314 476 RRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKARA 544 (546)
T ss_pred ccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhhhc
Confidence 8889999999987653 345689999999999999999999999999999999999999998776554
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-70 Score=591.70 Aligned_cols=481 Identities=21% Similarity=0.293 Sum_probs=405.6
Q ss_pred CCHHHHHhhcccC--CCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHH
Q 008895 38 ISAVDYVSSLRAT--LPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (549)
Q Consensus 38 ~~~~~~~~~~~~~--~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~ 115 (549)
.|+.+++..++.+ + |+++|+++. ..+||+||+++++++|++|.+ .|+++|++|+++++|+++++++++||
T Consensus 4 ~~~~~~~~~~a~~~~~----pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~ 75 (705)
T PRK06060 4 GNLAGLLAEQASEAGW----YDRPAFYAA---DVVTHGQIHDGAARLGEVLRN-RGLSSGDRVLLCLPDSPDLVQLLLAC 75 (705)
T ss_pred cCHHHHHHHHHhhccC----CCceEEEec---CceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 3788888888775 5 999999864 479999999999999999999 89999999999999999999999999
Q ss_pred HHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEE
Q 008895 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (549)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (549)
+++|++++|++|.++.+++.+++++++++++|++......+.... .+ . ....................+++.+
T Consensus 76 ~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~--~---~~~~~~~~~~~~~~~~~~~~~~~~a 148 (705)
T PRK06060 76 LARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSR--VA--E---AAELMSEAARVAPGGYEPMGGDALA 148 (705)
T ss_pred HHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccc--cc--h---hhhhhhhccccCCCCCCCCCCCCeE
Confidence 999999999999999999999999999999999876555443211 11 0 1111110000001111223567899
Q ss_pred EEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEec-CcCHHHH
Q 008895 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMM 273 (549)
Q Consensus 196 ~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~-~~~~~~~ 273 (549)
+++|||||||.||+|.++|+++.+++.............++++...|++|.+++ ..++.++..|+++++.+ .+++..+
T Consensus 149 ~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~ 228 (705)
T PRK06060 149 YATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAA 228 (705)
T ss_pred EEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHH
Confidence 999999999999999999999988776543322145678899999999998887 56678899999998876 4788889
Q ss_pred HHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 274 ~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
...+.++++|+++++|+++..+++... ...++++|.+++|||++++++.+++.+.+++.++++.||+||++.......
T Consensus 229 ~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 306 (705)
T PRK06060 229 AILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNR 306 (705)
T ss_pred HHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEecc
Confidence 999999999999999999999887543 235789999999999999999999999998889999999999986554322
Q ss_pred CcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCe
Q 008895 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433 (549)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 433 (549)
......+++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.+. ..++||+|||+|+++++|+
T Consensus 307 --~~~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~ 380 (705)
T PRK06060 307 --VDEWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGW 380 (705)
T ss_pred --CCCCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCce
Confidence 1223457899999999999999 568899999999999999999999999988653 3579999999999999999
Q ss_pred EEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCC
Q 008895 434 LFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE---AEIMEFVARQVSP 510 (549)
Q Consensus 434 ~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~~l~~~l~~ 510 (549)
+++.||+||+||++|++|+|.+||++|.+++.|.+++|++.++...++.+++|++.......+. ++++++++++|+.
T Consensus 381 l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~ 460 (705)
T PRK06060 381 VTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSA 460 (705)
T ss_pred EEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999998878889999998765543333 5788999999999
Q ss_pred CCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 511 YKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 511 ~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
|++|..|+++++||+|++||++|++|++++.
T Consensus 461 ~~~P~~i~~v~~iP~t~~GKidr~~L~~~~~ 491 (705)
T PRK06060 461 FKVPHRFAVVDRLPRTPNGKLVRGALRKQSP 491 (705)
T ss_pred CcCCcEEEEeecCCCCcchhhHHHHHHhhcc
Confidence 9999999999999999999999999998764
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-70 Score=584.97 Aligned_cols=492 Identities=22% Similarity=0.253 Sum_probs=398.0
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEE---CC--C--CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALIN---SV--T--GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~---~~--~--~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~ 109 (549)
..++.+++...++++ |+++|+.. .. . .+.+||+||.++++++|++|++ +|+++||+|+|+++|+++++
T Consensus 43 ~~tl~~~l~~~a~~~----p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e~~ 117 (651)
T PLN02736 43 IGTLHDNFVYAVETF----RDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQ-HGIPKGACVGLYFINRPEWL 117 (651)
T ss_pred CCCHHHHHHHHHHhC----CCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHH
Confidence 368999999999999 99999842 11 1 1469999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCe-EEEecCC--------------
Q 008895 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDSP-------------- 169 (549)
Q Consensus 110 v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~-------------- 169 (549)
++++||+++|++++|+++.++.+++.+++++++++++|++.+....+... ..+ ++.++..
T Consensus 118 ~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 197 (651)
T PLN02736 118 IVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVE 197 (651)
T ss_pred HHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcE
Confidence 99999999999999999999999999999999999999987765544321 112 2222211
Q ss_pred --chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHH
Q 008895 170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247 (549)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 247 (549)
.++++....... ........++++++|+|||||||.||||++||+++++++......+ ...++|++++.+|++|.+
T Consensus 198 ~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~-~~~~~d~~l~~lPl~h~~ 275 (651)
T PLN02736 198 IVTYSKLLAQGRSS-PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-KFYPSDVHISYLPLAHIY 275 (651)
T ss_pred EEEHHHHHHhcccC-CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhcc-CCCCCCEEEEeCCHHHHH
Confidence 122222111100 1112234678999999999999999999999999998888777666 467789999999999999
Q ss_pred HHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC---------------------------
Q 008895 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--------------------------- 300 (549)
Q Consensus 248 g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--------------------------- 300 (549)
++...+.++..|+++++... ++..+++.|+++++|+++++|.++..+.+...
T Consensus 276 ~~~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (651)
T PLN02736 276 ERVNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALEN 354 (651)
T ss_pred HHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHc
Confidence 99888889999999888764 78899999999999999999999887754310
Q ss_pred --CCC------------CCC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccc
Q 008895 301 --TDG------------YDL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365 (549)
Q Consensus 301 --~~~------------~~l-~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G 365 (549)
... ..+ +++|.+++||+++++++.+++.+.+ ++.+++.||+||++..+.... ......+++|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~--~~~~~~~~vG 431 (651)
T PLN02736 355 GKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMD--EGDNLSGHVG 431 (651)
T ss_pred CCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccC--CCCCCCCccC
Confidence 000 001 4899999999999999999999888 688999999999987655432 2234568999
Q ss_pred cccCCcEEEEEcCCCCC---cCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCC
Q 008895 366 RLSAGLEAKIVDPETGD---SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKD 442 (549)
Q Consensus 366 ~~~~~~~~~i~d~~~~~---~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d 442 (549)
+|+||++++|+|.+++. ...++..|||+|+||+++.|||++++.+...|..+|||+|||+|++|+||++++.||+||
T Consensus 432 ~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd 511 (651)
T PLN02736 432 SPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKN 511 (651)
T ss_pred CccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechh
Confidence 99999999999844332 223345799999999999999999999999998899999999999999999999999999
Q ss_pred eeee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC--------CCCHHHHHHHHH--------
Q 008895 443 LIKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS--------SLNEAEIMEFVA-------- 505 (549)
Q Consensus 443 ~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~--------~~~~~~i~~~l~-------- 505 (549)
+||+ +|++|+|.+||++|.+||.|.+|+|++. ..++.++++|++++.. ..+..++.++++
T Consensus 512 ~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 588 (651)
T PLN02736 512 IFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAV 588 (651)
T ss_pred heEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHH
Confidence 9998 7999999999999999999999999973 3467899999986421 122122222221
Q ss_pred ----------hcCCCCCcccEEEEeCccC------CCCCCcccHHHHHcccCc
Q 008895 506 ----------RQVSPYKKIRRVAFINAIP------KSAAGKILRMELRKVAVP 542 (549)
Q Consensus 506 ----------~~l~~~~~p~~i~~v~~lP------~t~~GKv~r~~l~~~~~~ 542 (549)
.+|+.|++|+.|+++++.| +|++||++|+++++.|.+
T Consensus 589 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~ 641 (651)
T PLN02736 589 LADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAK 641 (651)
T ss_pred HHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHH
Confidence 2699999999999998886 699999999999998753
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=564.11 Aligned_cols=484 Identities=21% Similarity=0.331 Sum_probs=417.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+++.+.|.+.++++ |+++|+++. +.++||.||.++++++|++|.+ .| .+|++|+|+++|+.++++++|||++
T Consensus 1 ~~~~~~~~~~a~~~----p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~~-~~~~~v~i~~~~~~~~~~~~la~~~ 72 (487)
T PRK07638 1 MGITKEYKKHASLQ----PNKIAIKEN--DRVLTYKDWFESVCKVANWLNE-KE-SKNKTIAILLENRIEFLQLFAGAAM 72 (487)
T ss_pred CChHHHHHHHHHhC----CCCeEEecC--CcEeeHHHHHHHHHHHHHHHHH-hC-CCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 46788899999999 999999987 7899999999999999999998 77 4899999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|+++.++.+++.++++.+++++++++......+......++.++ .+........ . .........++++++
T Consensus 73 ~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~a~i 148 (487)
T PRK07638 73 AGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID--EWKRMIEKYL-P-TYAPIENVQNAPFYM 148 (487)
T ss_pred cCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEeh--hhhhhhhhcc-c-cccccccCCCCcEEE
Confidence 99999999999999999999999999999999866554443333333332 2222221111 0 111112234668999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l 277 (549)
+|||||||.||+|+++|+++..++......+ ...++|+++...|++|..++...+.++..|+++++.+.+++..+++.+
T Consensus 149 ~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~i 227 (487)
T PRK07638 149 GFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-HMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKL 227 (487)
T ss_pred EeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHHH
Confidence 9999999999999999999988887766655 467889999999999988888888899999999999889999999999
Q ss_pred HHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCC
Q 008895 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357 (549)
Q Consensus 278 ~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~ 357 (549)
+++++|+++++|+++..+.+... ...+.+.++++|++++.++.+++.+.+++..+++.||+||++.++.... ...
T Consensus 228 ~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~ 302 (487)
T PRK07638 228 ETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-EES 302 (487)
T ss_pred HHcCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc-ccc
Confidence 99999999999999999987632 2346667889999999999999999998999999999999987665533 223
Q ss_pred CCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEE
Q 008895 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIV 437 (549)
Q Consensus 358 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~ 437 (549)
....+++|+|++++.++|+| +++.+++.|+.|||+|+|+.++.||+++++.+...+ .+|||+|||+|++|++|++++.
T Consensus 303 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~ 380 (487)
T PRK07638 303 ERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIV 380 (487)
T ss_pred CCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEE
Confidence 34567899999999999999 678999999999999999999999999998776654 6899999999999999999999
Q ss_pred cccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEE
Q 008895 438 DRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRV 517 (549)
Q Consensus 438 GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i 517 (549)
||++|+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.++++++. ..+.++++++++++++.+++|..+
T Consensus 381 GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~~l~~~~~~~l~~~~~p~~i 456 (487)
T PRK07638 381 GREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQQLKSFCLQRLSSFKIPKEW 456 (487)
T ss_pred ecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CCCHHHHHHHHHHHhhcccCCcEE
Confidence 9999999999999999999999999999999999999988788888888863 357889999999999999999999
Q ss_pred EEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 518 AFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 518 ~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
+++++||+|++||++|++|++++.+...
T Consensus 457 ~~v~~iP~t~~GKv~r~~L~~~~~~~~~ 484 (487)
T PRK07638 457 HFVDEIPYTNSGKIARMEAKSWIENQEK 484 (487)
T ss_pred EEecccCCCCcccccHHHHHHHHhcccc
Confidence 9999999999999999999999877653
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-69 Score=578.96 Aligned_cols=500 Identities=23% Similarity=0.325 Sum_probs=407.6
Q ss_pred CCCHH-HHHhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHH
Q 008895 37 PISAV-DYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL 111 (549)
Q Consensus 37 ~~~~~-~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~ 111 (549)
.+|+. +.+.++++.+ |+++|++.. ...+++||+||.++++++|++|++ .|+++||+|+++++|+++++++
T Consensus 51 ~~n~~~~~l~~~~~~~----p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~ 125 (629)
T PRK10524 51 RTNLCHNAVDRHLAKR----PEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRS-LGVQRGDRVLIYMPMIAEAAFA 125 (629)
T ss_pred EeeHHHHHHHHhhccC----CCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHH
Confidence 36664 4555666677 999999863 124689999999999999999998 8999999999999999999999
Q ss_pred HHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH---------HHHh----c---CCCeEEEecCC------
Q 008895 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA----K---LKHRTILIDSP------ 169 (549)
Q Consensus 112 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~----~---~~~~~~~~~~~------ 169 (549)
++||+++|++++|++|.++.+++.+++++++++++|+++... +.+. . ....++.++..
T Consensus 126 ~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 205 (629)
T PRK10524 126 MLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMAR 205 (629)
T ss_pred HHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCc
Confidence 999999999999999999999999999999999999976421 1111 1 11234433321
Q ss_pred ------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecCh
Q 008895 170 ------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY 243 (549)
Q Consensus 170 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl 243 (549)
.+.++..... ..........++++++++|||||||.||+|+++|.+++..............+++++++.+|+
T Consensus 206 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 284 (629)
T PRK10524 206 VAGRDVDYATLRAQHL-GARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDI 284 (629)
T ss_pred ccCCcccHHHHHhcCC-CCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCC
Confidence 1111111100 001111224568899999999999999999999998865554433333356778999999999
Q ss_pred hhHHHH-HHHHHHhhhccEEEEec----CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEec
Q 008895 244 FHIYGL-FFCFRAAALMETAVVMQ----RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGA 316 (549)
Q Consensus 244 ~~~~g~-~~~~~~l~~g~~~~~~~----~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~G 316 (549)
.|..+. +.++.++..|+++++.. ..++..+++.|+++++|+++++|++++.+.+.... ...+++++|.+++||
T Consensus 285 ~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G 364 (629)
T PRK10524 285 GWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAG 364 (629)
T ss_pred CeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeC
Confidence 998876 56788899999998875 35789999999999999999999999988775432 344678999999999
Q ss_pred CCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC--cCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEE
Q 008895 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG--PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI 394 (549)
Q Consensus 317 e~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v 394 (549)
+++++++.+++.+.+ ++.+++.||+||++..+..... .......+++|.|++|++++|+|++++++++.|+.|||++
T Consensus 365 e~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i 443 (629)
T PRK10524 365 EPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVI 443 (629)
T ss_pred CCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEE
Confidence 999999999999988 7889999999999843332211 1123346789999999999999965899999999999999
Q ss_pred ecC---CcccccCCCccccccccC---CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcce
Q 008895 395 RGP---TIMKGYVGEPEVTSATLL---PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468 (549)
Q Consensus 395 ~g~---~~~~gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~ 468 (549)
+|| +.+.||+++++.+...+. .++||+|||+|++|++|++++.||.||+||++|++|+|.+||++|.+||+|.+
T Consensus 444 ~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e 523 (629)
T PRK10524 444 EGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAE 523 (629)
T ss_pred cCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcce
Confidence 998 578899999877655432 46899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCceeEEEEEeCCCCCCC--------HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 469 AAVIPYPDEEAGQMPMAFVVRQPHSSLN--------EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 469 ~~vv~~~~~~~~~~~~~~v~~~~~~~~~--------~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
++|++.++...++.+++|+++++....+ .++|+++++++|+.++.|..|+++++||+|++||++|+.|++++
T Consensus 524 ~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~ 603 (629)
T PRK10524 524 VAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIA 603 (629)
T ss_pred EEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHH
Confidence 9999999988889999999987653321 46899999999999999999999999999999999999999987
Q ss_pred CcC
Q 008895 541 VPS 543 (549)
Q Consensus 541 ~~~ 543 (549)
...
T Consensus 604 ~~~ 606 (629)
T PRK10524 604 EGR 606 (629)
T ss_pred cCC
Confidence 654
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-69 Score=562.36 Aligned_cols=491 Identities=27% Similarity=0.410 Sum_probs=424.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|+.+.+...++++ |+++|+++. ++.+||.||.+++.++|.+|.+ .|+.+|++|+++++|+.+++++++||++
T Consensus 2 ~~~~~~~~~~~~~~----~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~ 74 (497)
T PRK06145 2 FNLSASIAFHARRT----PDRAALVYR--DQEISYAEFHQRILQAAGMLHA-RGIGQGDVVALLMKNSAAFLELAFAASY 74 (497)
T ss_pred ccHHHHHHHHHHHC----CCceEEEEC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 57889999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCc---hhhhhcccCCCccccccccCCCCE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPE---FDSMTMSWNSKHELDRAKVCQSDV 194 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 194 (549)
+|++++|+++.++.+.+.++++.+++++++++.+........ ...+.++... +..+... . ..........++++
T Consensus 75 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 151 (497)
T PRK06145 75 LGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALE-TPKIVIDAAAQADSRRLAQG-G-LEIPPQAAVAPTDL 151 (497)
T ss_pred cCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhcc-cceEEecCcccchhHHHhcc-C-CCCCCCCCCCccce
Confidence 999999999999999999999999999999987765443211 1222232211 1111100 0 00111123466889
Q ss_pred EEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHH
Q 008895 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMM 273 (549)
Q Consensus 195 a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~ 273 (549)
++++|||||||.||+|+++|+++..........+ +...+++++..+|++|.+++ ...+.++..|+++++.+.+++..+
T Consensus 152 a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~ 230 (497)
T PRK06145 152 VRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-GLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAV 230 (497)
T ss_pred EEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHH
Confidence 9999999999999999999999987665554444 46788899999999999888 445778889999999888999999
Q ss_pred HHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 274 ~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
++.++++++|++.++|+++..++.........++++|.+++||++++.++++.+.+.+++..+++.||+||++.......
T Consensus 231 ~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~ 310 (497)
T PRK06145 231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLME 310 (497)
T ss_pred HHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceecc
Confidence 99999999999999999999999877655566789999999999999999999999998899999999999987655433
Q ss_pred CcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCe
Q 008895 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433 (549)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 433 (549)
........+++|.|+++++++++| +++..++.|+.|||+++|++++.||+++++.+...| .++||+|||+|+++++|+
T Consensus 311 ~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~ 388 (497)
T PRK06145 311 AGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGF 388 (497)
T ss_pred CccccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCc
Confidence 222333557899999999999999 567889999999999999999999999999998888 489999999999999999
Q ss_pred EEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCc
Q 008895 434 LFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKK 513 (549)
Q Consensus 434 ~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~ 513 (549)
++++||+||+||++|.+++|.+||++|.++|+|.+++|++.++...++.+++++++.+....+.+++.++++++|+++++
T Consensus 389 l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~ 468 (497)
T PRK06145 389 LYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKV 468 (497)
T ss_pred EEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999999999999999988888899999998776667889999999999999999
Q ss_pred ccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 514 IRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 514 p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
|..++++++||+|++||++|++|++++.
T Consensus 469 p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 469 PRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred CCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 9999999999999999999999998764
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-69 Score=570.04 Aligned_cols=493 Identities=26% Similarity=0.395 Sum_probs=415.4
Q ss_pred CCHHH-HHhhccc-CCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 38 ISAVD-YVSSLRA-TLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 38 ~~~~~-~~~~~~~-~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
+|+.. .+.++++ .+ |+++|+++.. ..+++||+||.++++++|.+|.+ .|+++||+|+++++|++++++++|
T Consensus 42 ~~~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~l 116 (570)
T PRK04319 42 VNIAYEAIDRHADGGR----KDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-LGVEKGDRVFIFMPRIPELYFALL 116 (570)
T ss_pred eeHHHHHHHHhhccCC----CCceEEEEECCCCceeecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHH
Confidence 56664 5555555 45 8999998642 24689999999999999999998 999999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc--C-CC-eEEEecCC--------chhhhhcccCCC
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK--L-KH-RTILIDSP--------EFDSMTMSWNSK 181 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~-~~-~~~~~~~~--------~~~~~~~~~~~~ 181 (549)
||+++|++++|+++.++.+++.++++.+++++++++......... . .. .++.++.. .+.+.......
T Consensus 117 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 195 (570)
T PRK04319 117 GALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASD- 195 (570)
T ss_pred HHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCC-
Confidence 999999999999999999999999999999999998776543321 1 11 23333221 22222211110
Q ss_pred ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhcc
Q 008895 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALME 260 (549)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~ 260 (549)
........++++++++|||||||.||+|.++|++++.+.......+ ...+++++++..|++|.+|. ..++.++..|+
T Consensus 196 -~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~ 273 (570)
T PRK04319 196 -EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-DLHEDDVYWCTADPGWVTGTSYGIFAPWLNGA 273 (570)
T ss_pred -cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCCCceEEecCChHHhhCchHHHHHHHhcCc
Confidence 1112234567899999999999999999999999988877666655 46778999999999998887 66788999999
Q ss_pred EEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEE
Q 008895 261 TAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337 (549)
Q Consensus 261 ~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~ 337 (549)
++++.. .+++..+++.|+++++|+++++|+++..+.+... ....+++++|.+++||+++++++.+++++.+ +..++
T Consensus 274 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~ 352 (570)
T PRK04319 274 TNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIH 352 (570)
T ss_pred eEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHh-CCCeE
Confidence 988875 5899999999999999999999999999987643 2344678999999999999999999999988 78899
Q ss_pred cccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEec--CCcccccCCCccccccccC
Q 008895 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLL 415 (549)
Q Consensus 338 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~ 415 (549)
+.||+||++..+.... .......+++|+|+++++++|+| +++.+++.|+.|||+++| +.++.||+++++.+...|.
T Consensus 353 ~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~ 430 (570)
T PRK04319 353 DNWWMTETGGIMIANY-PAMDIKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA 430 (570)
T ss_pred eceeecccCCEEEecC-CCCCCCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc
Confidence 9999999987654422 22234567899999999999999 667788999999999997 8999999999999988885
Q ss_pred CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC
Q 008895 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL 495 (549)
Q Consensus 416 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~ 495 (549)
+|||+|||+|+++++|++++.||++|+|+.+|++|+|.+||++|.++|.|.+++|++.++...++.++++++..++...
T Consensus 431 -~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~ 509 (570)
T PRK04319 431 -GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEP 509 (570)
T ss_pred -CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999998889999999998765443
Q ss_pred CH---HHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 496 NE---AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 496 ~~---~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+. ++|.++++++|+.|++|+.|+++++||+|++||++|++|++++.+
T Consensus 510 ~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~ 559 (570)
T PRK04319 510 SEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELG 559 (570)
T ss_pred CHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHhC
Confidence 32 689999999999999999999999999999999999999998643
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-68 Score=561.06 Aligned_cols=490 Identities=27% Similarity=0.384 Sum_probs=423.4
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+++.+.++.+ |+++|+++. ++.+||.||.+++.++|..|.+ .|+++|++|+++++|++++++++|||++
T Consensus 21 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~-~gi~~g~~V~v~~~n~~~~~~~~lA~~~ 93 (542)
T PRK06155 21 RTLPAMLARQAERY----PDRPLLVFG--GTRWTYAEAARAAAAAAHALAA-AGVKRGDRVALMCGNRIEFLDVFLGCAW 93 (542)
T ss_pred cCHHHHHHHHHHHC----CCCeEEEeC--CccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 78999999999999 999999987 7899999999999999999998 9999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCC------CeEEEecCCc-------hhhhhcccCCCccc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE-------FDSMTMSWNSKHEL 184 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~~ 184 (549)
+|++++|+++.++.+++.++++++++++++++.+....+.... ...+.++... +........ ....
T Consensus 94 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 172 (542)
T PRK06155 94 LGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPL-DAPA 172 (542)
T ss_pred hCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhccc-CCCC
Confidence 9999999999999999999999999999999987766554321 1233333211 000000000 0011
Q ss_pred cccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEE
Q 008895 185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV 264 (549)
Q Consensus 185 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~ 264 (549)
......++++++++|||||||.||+|.++|+++..........+ ...+.+++++.+|++|.+++...+.++..|+++++
T Consensus 173 ~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~ 251 (542)
T PRK06155 173 PAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-EIGADDVLYTTLPLFHTNALNAFFQALLAGATYVL 251 (542)
T ss_pred CCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-CCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEe
Confidence 11234568899999999999999999999999987776655555 46788999999999999999878999999999999
Q ss_pred ecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccc
Q 008895 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344 (549)
Q Consensus 265 ~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE 344 (549)
...+++..+++.|+++++|+++++|+++..+.+.........+++|.++.|| +++.+.+.+.+.+ ++.+++.||+||
T Consensus 252 ~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE 328 (542)
T PRK06155 252 EPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTE 328 (542)
T ss_pred eCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccc
Confidence 9889999999999999999999999999999887766666678898877655 5789999999988 789999999999
Q ss_pred cccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecC---CcccccCCCccccccccCCCCeee
Q 008895 345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP---TIMKGYVGEPEVTSATLLPDGWMR 421 (549)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~---~~~~gy~~~~~~~~~~~~~~~~~~ 421 (549)
++..+.... .....+++|.+.+++.++|+| +++++++.|+.|||+++|+ +++.||+++++.+...| .++||+
T Consensus 329 ~~~~~~~~~---~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~ 403 (542)
T PRK06155 329 TNFVIAVTH---GSQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFH 403 (542)
T ss_pred cCccccCCC---CCCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEe
Confidence 987655421 233567899999999999999 5689999999999999998 69999999999888877 589999
Q ss_pred cCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 008895 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIM 501 (549)
Q Consensus 422 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 501 (549)
|||+|+++++|++++.||.+|+++++|.+|+|.+||++|.++|+|.+++|+++++...++.+.++++...+...+..+++
T Consensus 404 TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~ 483 (542)
T PRK06155 404 TGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALV 483 (542)
T ss_pred ccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988778888888888777777889999
Q ss_pred HHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 502 EFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 502 ~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
++++++|+.+++|..|+++++||+|++||++|++|++++.+..
T Consensus 484 ~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~ 526 (542)
T PRK06155 484 RHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVTAD 526 (542)
T ss_pred HHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhccCCc
Confidence 9999999999999999999999999999999999999876543
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=569.03 Aligned_cols=496 Identities=30% Similarity=0.494 Sum_probs=423.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.+.+.++++ |+++|+.+. ++.+||.||.++++++|+.|.+ +|+++||+|+++++|+++++++++||++
T Consensus 32 ~~l~~~~~~~~~~~----p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~-~gi~~gd~V~l~~~n~~~~~~~~lA~~~ 104 (573)
T PRK05605 32 TTLVDLYDNAVARF----GDRPALDFF--GATTTYAELGKQVRRAAAGLRA-LGVRPGDRVAIVLPNCPQHIVAFYAVLR 104 (573)
T ss_pred CCHHHHHHHHHHHC----CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 68999999999999 999999986 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCe-EEEecC------------------------
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDS------------------------ 168 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~-~~~~~~------------------------ 168 (549)
+|++++|++|.++.+++.+++.+++++++|+++.....+.+. ... ++.++.
T Consensus 105 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (573)
T PRK05605 105 LGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARA 184 (573)
T ss_pred cCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccccccccccccc
Confidence 999999999999999999999999999999987755443221 111 111110
Q ss_pred ---------CchhhhhcccCCC--ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCC-CCCCcE
Q 008895 169 ---------PEFDSMTMSWNSK--HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAV 236 (549)
Q Consensus 169 ---------~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~ 236 (549)
..|.++....... .........++++++++|||||||.||+|.++|+++..+.......+.. ...+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~ 264 (573)
T PRK05605 185 ALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPER 264 (573)
T ss_pred ccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcE
Confidence 0111111110000 0011122456889999999999999999999999998877654443321 234689
Q ss_pred EEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEe
Q 008895 237 MLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (549)
Q Consensus 237 ~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~ 315 (549)
+++.+|++|.+|+ ...+.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++........++++|.+++|
T Consensus 265 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~g 344 (573)
T PRK05605 265 VLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSG 344 (573)
T ss_pred EEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEEC
Confidence 9999999999988 456677889999999888899999999999999999999999999998776667778999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCC-CCcCCCCCcceEEE
Q 008895 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPET-GDSLPPGKEGELSI 394 (549)
Q Consensus 316 Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~g~~Gel~v 394 (549)
|+++++++.+.+.+.+ +..+++.||+||++.++..... ......+++|.|++++.++|+|+++ +.+++.|+.|||++
T Consensus 345 g~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v 422 (573)
T PRK05605 345 AMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPM-SDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLV 422 (573)
T ss_pred CCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCc-ccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEE
Confidence 9999999999999887 7889999999999876654322 2223457899999999999999776 68899999999999
Q ss_pred ecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEee
Q 008895 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474 (549)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~ 474 (549)
+|+.++.||+++++.+...|. +|||+|||+|+++++|++++.||+||+++.+|++|+|.+||++|..++.|.+++|++.
T Consensus 423 ~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~ 501 (573)
T PRK05605 423 RGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGL 501 (573)
T ss_pred ecCchhhhhcCChhHhhhccc-CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEee
Confidence 999999999999999988884 6799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 475 ~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
++...++.+++++++.++...+.+++.++++++|+.+++|..++++++||+|.+||++|++|++++.+.
T Consensus 502 ~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 570 (573)
T PRK05605 502 PREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEK 570 (573)
T ss_pred ecccCCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHH
Confidence 888888899999998877667889999999999999999999999999999999999999999988543
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=579.61 Aligned_cols=494 Identities=24% Similarity=0.343 Sum_probs=404.1
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECC-------CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSV-------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~ 109 (549)
..|+.+.+.+.++++ |+++|+++.. ..+.+||+||.++++++|++|++ . +++||+|+++++|+++++
T Consensus 20 ~~~l~~~l~~~a~~~----~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~-~~~gd~V~i~~~n~~e~~ 93 (631)
T PRK07769 20 NTNLVRHVERWAKVR----GDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ-V-TKPGDRVAILAPQNLDYL 93 (631)
T ss_pred cCCHHHHHHHHHHhC----CCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH-h-cCCCCEEEEEcCCChHHH
Confidence 368999999999988 9999998631 12589999999999999999998 5 899999999999999999
Q ss_pred HHHHHHHHcCCeEccC-CCCCC--HHHHHHHHhhcCCeEEEEcCccHHHHhcC----C----CeEEEecCCchhhhhccc
Q 008895 110 ILYFSLLSLGVIISPA-NPVNT--ESEISRQIQLSNPVIAFATSSVVHKLAKL----K----HRTILIDSPEFDSMTMSW 178 (549)
Q Consensus 110 v~~la~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~ 178 (549)
+++|||+++|++++|+ ++..+ .+++.+++++++++++|+++...+.+.+. . ..++.++.. .+. .
T Consensus 94 ~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~ 168 (631)
T PRK07769 94 IAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAV--PDE---V 168 (631)
T ss_pred HHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccc--ccc---c
Confidence 9999999999999999 55554 68899999999999999988765543221 1 122222210 000 0
Q ss_pred CCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhh
Q 008895 179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAAL 258 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~ 258 (549)
. . ........++++++++|||||||.||+|+++|+++.+........+ ....+++++..+|++|.+|+...+.+++.
T Consensus 169 ~-~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~ 245 (631)
T PRK07769 169 G-A-TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-EGQEGDRGVSWLPFFHDMGLITVLLPALL 245 (631)
T ss_pred c-c-ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-CCCCcceEEEeCCCcCchhhHHHHHHHhh
Confidence 0 0 1111234568999999999999999999999999988877666555 45678899999999999999777778888
Q ss_pred ccEEEEecC--c--CHHHHHHHHHHhce---eeeeecHHHHHHHHhC---CC--CCCCCCCCceEEEEecCCCCHHHHHH
Q 008895 259 METAVVMQR--F--DLKMMLKAVEEFRV---THAAVTPPIVVAMSKG---GS--TDGYDLSSLETVACGAAPLGKDTIMA 326 (549)
Q Consensus 259 g~~~~~~~~--~--~~~~~~~~l~~~~~---t~l~~~P~~l~~l~~~---~~--~~~~~l~~lr~v~~~Ge~l~~~~~~~ 326 (549)
|+++++..+ + ++..+++.+.++++ +++..+|+++..++.. .. ....+++++|.+++||+++++++.++
T Consensus 246 G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 325 (631)
T PRK07769 246 GHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRK 325 (631)
T ss_pred CCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHH
Confidence 999888753 3 88999999999886 7889999987766543 11 11346889999999999999999999
Q ss_pred HHHhCC-----CCcEEcccCccccccceecccCcCC-------------------------CCCCCccccccCCcEEEEE
Q 008895 327 FASKFP-----KVVLVQAYGLTESTAGVFRTVGPDE-------------------------CRRWGSTGRLSAGLEAKIV 376 (549)
Q Consensus 327 ~~~~~~-----~~~l~~~yG~tE~~~~~~~~~~~~~-------------------------~~~~~~~G~~~~~~~~~i~ 376 (549)
|.+.|+ ...+++.||+||++..+........ .....++|+|.++.+++|+
T Consensus 326 ~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~iv 405 (631)
T PRK07769 326 FNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIV 405 (631)
T ss_pred HHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEE
Confidence 999873 2458999999998765554221110 0112478999999999999
Q ss_pred cCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC-----------------CCeeecCceEEEecCCeEEEEcc
Q 008895 377 DPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-----------------DGWMRTGDLCYIDEDGFLFIVDR 439 (549)
Q Consensus 377 d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-----------------~~~~~TGD~~~~~~~g~~~~~GR 439 (549)
|++++++++.|+.|||+|+|++++.|||++++.+.+.|.. +|||+|||+|+++ +|+++++||
T Consensus 406 d~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR 484 (631)
T PRK07769 406 DPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGR 484 (631)
T ss_pred cCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcc
Confidence 9888999999999999999999999999999999888742 4899999999995 999999999
Q ss_pred cCCeeeeCcEeeChHHHHHHHHc-CCCcce--EEEEeecC-------------------CCCCceeEEEEEeCCCC-CCC
Q 008895 440 LKDLIKYKGYQVAPAELEHLLLS-HREVAD--AAVIPYPD-------------------EEAGQMPMAFVVRQPHS-SLN 496 (549)
Q Consensus 440 ~~d~i~~~G~~v~~~~IE~~l~~-~~~v~~--~~vv~~~~-------------------~~~~~~~~~~v~~~~~~-~~~ 496 (549)
+||+||++|++|+|.|||++|.+ ||.|.+ ++|+++++ +..++.++++|++.++. ..+
T Consensus 485 ~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~ 564 (631)
T PRK07769 485 VKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLD 564 (631)
T ss_pred cccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCcccccc
Confidence 99999999999999999999986 899998 89999888 45778899999987653 567
Q ss_pred HHHHHHHHHhcCCC-CC-cccEEEEeC--ccCCCCCCcccHHHHHcccCcCCC
Q 008895 497 EAEIMEFVARQVSP-YK-KIRRVAFIN--AIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 497 ~~~i~~~l~~~l~~-~~-~p~~i~~v~--~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
.++|.++++++|.. ++ .|+.+.+++ +||+|++|||+|++|++++.++.+
T Consensus 565 ~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~ 617 (631)
T PRK07769 565 PQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGSL 617 (631)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCCC
Confidence 89999999999995 56 488888886 799999999999999999987765
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=562.90 Aligned_cols=491 Identities=30% Similarity=0.471 Sum_probs=428.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|...+..+ |+++|+.+. ++++||+||++++.++|+.|.+ .|+++|++|+++++|+++++++++||++
T Consensus 5 ~~i~~~l~~~~~~~----~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~g~~V~l~~~~~~~~~~~~la~~~ 77 (513)
T PRK07656 5 MTLPELLARAARRF----GDKEAYVFG--DQRLTYAELNARVRRAAAALAA-LGIGKGDRVAIWAPNSPHWVIAALGALK 77 (513)
T ss_pred ccHHHHHHHHHHHC----CCCeEEEeC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 68999999999999 999999997 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCe-EEEecC----------CchhhhhcccCCC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDS----------PEFDSMTMSWNSK 181 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~----------~~~~~~~~~~~~~ 181 (549)
+|++++|+++..+.+.+..++++++++++++++......... ... .+.... ..|.++......
T Consensus 78 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 156 (513)
T PRK07656 78 AGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDP- 156 (513)
T ss_pred cCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCC-
Confidence 999999999999999999999999999999988765543321 111 222221 122333222111
Q ss_pred ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhcc
Q 008895 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALME 260 (549)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~ 260 (549)
........++++++++|||||||.||+|.++|.++..........+ ...+.+++++.+|++|.+++ ..++.++..|+
T Consensus 157 -~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~ 234 (513)
T PRK07656 157 -AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGA 234 (513)
T ss_pred -CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-CCCCCCeEEEccchHHHHHHHHHHHHHHHcCc
Confidence 1122235678899999999999999999999999988887766666 46788999999999999998 45788899999
Q ss_pred EEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEccc
Q 008895 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~y 340 (549)
++++...+++..+++.|+++++|+++++|+++..+++........++++|.+++||+++++++.+.+.+.++...+++.|
T Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~Y 314 (513)
T PRK07656 235 TILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGY 314 (513)
T ss_pred eEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEE
Confidence 99998888999999999999999999999999999998776666789999999999999999999999999433899999
Q ss_pred CccccccceecccCcCC-CCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 008895 341 GLTESTAGVFRTVGPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (549)
Q Consensus 341 G~tE~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 419 (549)
|+||+|+++..+..... ....+++|.|+++++++|+| +++++++.|+.|||+++|+.++.||++++..+...+..++|
T Consensus 315 G~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~ 393 (513)
T PRK07656 315 GLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGW 393 (513)
T ss_pred ccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCc
Confidence 99999877665432221 12257899999999999999 66899999999999999999999999999988888866899
Q ss_pred eecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 008895 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAE 499 (549)
Q Consensus 420 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~ 499 (549)
|+|||+|+++++|.+++.||.+|+++++|.++++.+||++|.++++|.+++|++.++...++.++++++.++....+.++
T Consensus 394 ~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~ 473 (513)
T PRK07656 394 LHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEE 473 (513)
T ss_pred eeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999987666678899
Q ss_pred HHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcc
Q 008895 500 IMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 539 (549)
Q Consensus 500 i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~ 539 (549)
+.++++++|+++++|..++++++||+|++||++|++|+++
T Consensus 474 l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~~ 513 (513)
T PRK07656 474 LIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALREK 513 (513)
T ss_pred HHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhcC
Confidence 9999999999999999999999999999999999999864
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=575.59 Aligned_cols=497 Identities=20% Similarity=0.214 Sum_probs=403.5
Q ss_pred CCCCHHHHHhhcccCCCCCCCCCcEEEECCC---CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHH
Q 008895 36 APISAVDYVSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (549)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~ 112 (549)
..+|+.+.+.++ .+ |+++|++.... .+++||+||.++++++|+.|++ .|+++||+|+++++|++++++++
T Consensus 84 ~~~n~~~~~~~~--~~----~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~v~~~ 156 (655)
T PRK03584 84 ARLNYAENLLRH--RR----DDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRA-LGVGPGDRVAAYLPNIPETVVAM 156 (655)
T ss_pred CEeeHHHHhhcc--CC----CCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHH
Confidence 347888877764 45 89999986421 2689999999999999999998 89999999999999999999999
Q ss_pred HHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH---------HHH----hcCC--CeEEEecC---------
Q 008895 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKL----AKLK--HRTILIDS--------- 168 (549)
Q Consensus 113 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~----~~~~--~~~~~~~~--------- 168 (549)
|||+++|++++|++|.++.+++.+++++++++++|+++... ..+ .... ..++.++.
T Consensus 157 lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 236 (655)
T PRK03584 157 LATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAA 236 (655)
T ss_pred HHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccc
Confidence 99999999999999999999999999999999999986532 111 1111 12333321
Q ss_pred ----CchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHH-HHHhhccCCCCCCCcEEEEecCh
Q 008895 169 ----PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA-VASSFASSPKRVSPAVMLFTMPY 243 (549)
Q Consensus 169 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~~pl 243 (549)
..|.++..... ...........+++++|+|||||||.||||+++|++++.+ .......+ ...++|++++..++
T Consensus 237 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~ 314 (655)
T PRK03584 237 LPGALLWEDFLAPAE-AAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-DLGPGDRFFWYTTC 314 (655)
T ss_pred cCCcccHHHHhhccc-cCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-CCCCCCEEEEcCCc
Confidence 11223222111 1011123345689999999999999999999999987644 33333334 46778999998888
Q ss_pred hhHHHHHHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEecC
Q 008895 244 FHIYGLFFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAA 317 (549)
Q Consensus 244 ~~~~g~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~Ge 317 (549)
.|..+ ...+.++..|+++++.+. +++..+++.++++++|++.++|+++..+.+... ....++++||.+++||+
T Consensus 315 ~~~~~-~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge 393 (655)
T PRK03584 315 GWMMW-NWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGS 393 (655)
T ss_pred hHHhH-HHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecC
Confidence 88754 345688999999998752 588999999999999999999999998876432 23356889999999999
Q ss_pred CCCHHHHHHHHHhC-CCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEec
Q 008895 318 PLGKDTIMAFASKF-PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396 (549)
Q Consensus 318 ~l~~~~~~~~~~~~-~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g 396 (549)
++++++.+++.+.+ +++.+.+.||+||++...... ........+++|.|.+|++++|+| ++++++ .|+.|||+|+|
T Consensus 394 ~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~-~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~GeL~v~g 470 (655)
T PRK03584 394 PLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGG-NPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVGELVCTK 470 (655)
T ss_pred CCCHHHHHHHHHHhCCCceEEeccChHhhhcccccC-CCCCCcCCCccCCCcCCceeEEEC-CCCCCC-CCCceEEEEcc
Confidence 99999999999988 468899999999986543321 122234568899999999999999 667777 79999999999
Q ss_pred C--CcccccCCCccccc--cccC--CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEE
Q 008895 397 P--TIMKGYVGEPEVTS--ATLL--PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470 (549)
Q Consensus 397 ~--~~~~gy~~~~~~~~--~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~ 470 (549)
+ +++.||+++++.++ ..+. .+|||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.+||+|.+|+
T Consensus 471 p~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~ 550 (655)
T PRK03584 471 PFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSL 550 (655)
T ss_pred CCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEE
Confidence 6 78999999987543 1111 1578999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 471 VIPYPDEEAGQMPMAFVVRQPHSSLNE---AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 471 vv~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
|++.+++..++.+++||+++++...+. ++|.++++++|+++++|..|+++++||+|++|||+|+.||+++.....
T Consensus 551 vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~~~ 628 (655)
T PRK03584 551 VIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGRPV 628 (655)
T ss_pred EEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCCCC
Confidence 999999888899999999887654443 689999999999999999999999999999999999999999876554
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=571.34 Aligned_cols=491 Identities=22% Similarity=0.328 Sum_probs=399.7
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCC--------ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTG--------LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~--------~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~ 109 (549)
+|+.+.+.+.++++ |+++|+++...+ +++||+||.++++++|++|.+ .|+++||+|+++++|+.+++
T Consensus 6 ~~~~~~l~~~a~~~----p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~g~~~gd~V~~~~~n~~~~~ 80 (552)
T PRK09274 6 ANIARHLPRAAQER----PDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNA-AGIGRGMRAVLMVTPSLEFF 80 (552)
T ss_pred hhHHHHHHHHHHhC----CCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCcHHHH
Confidence 78999999999988 999999875221 289999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcC--ccHHHHhcC---CC-eEEEecC------Cchhhhhcc
Q 008895 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS--SVVHKLAKL---KH-RTILIDS------PEFDSMTMS 177 (549)
Q Consensus 110 v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~--~~~~~~~~~---~~-~~~~~~~------~~~~~~~~~ 177 (549)
++++||+++|++++|++|.++.+++.+++++++++++|+++ .....+... .. ..+.++. ..+.++...
T Consensus 81 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 160 (552)
T PRK09274 81 ALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRD 160 (552)
T ss_pred HHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhccc
Confidence 99999999999999999999999999999999999999875 222222111 01 1222221 122222211
Q ss_pred cCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhh
Q 008895 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAA 257 (549)
Q Consensus 178 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~ 257 (549)
.... ........++++++++|||||||.||+|.++|+++...+......+ ...+.++.+..+|++|.+++ .
T Consensus 161 ~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~~-------~ 231 (552)
T PRK09274 161 GAAA-PFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-GIEPGEIDLPTFPLFALFGP-------A 231 (552)
T ss_pred Cccc-cCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-CCCCCceeeeccCHHHhhhh-------h
Confidence 1100 1112234568899999999999999999999999998887766665 46778899999999876543 3
Q ss_pred hccEEEEec-------CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHh
Q 008895 258 LMETAVVMQ-------RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330 (549)
Q Consensus 258 ~g~~~~~~~-------~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~ 330 (549)
.|.++++.. .+++..+++.|+++++|+++++|+++..|++.......+++++|.+++||+++++++.+++.+.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~ 311 (552)
T PRK09274 232 LGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAM 311 (552)
T ss_pred hCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHH
Confidence 466666643 3678999999999999999999999999988766556678999999999999999999999999
Q ss_pred CC-CCcEEcccCccccccceecccCc------C--CCCCCCccccccCCcEEEEEcCC--------CCCcCCCCCcceEE
Q 008895 331 FP-KVVLVQAYGLTESTAGVFRTVGP------D--ECRRWGSTGRLSAGLEAKIVDPE--------TGDSLPPGKEGELS 393 (549)
Q Consensus 331 ~~-~~~l~~~yG~tE~~~~~~~~~~~------~--~~~~~~~~G~~~~~~~~~i~d~~--------~~~~~~~g~~Gel~ 393 (549)
++ ++++++.||+||++.++...... . ......++|+|+++++++|+|++ ++++++.|+.|||+
T Consensus 312 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~ 391 (552)
T PRK09274 312 LPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIV 391 (552)
T ss_pred cCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEE
Confidence 96 47999999999998765432211 0 11122378999999999999853 46789999999999
Q ss_pred EecCCcccccCCCccccccccC--CCC--eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceE
Q 008895 394 IRGPTIMKGYVGEPEVTSATLL--PDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA 469 (549)
Q Consensus 394 v~g~~~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~ 469 (549)
|+|++++.||+++++.+...|. .+| ||+|||+|++|++|++++.||.||+||++|++|+|.+||++|.+||+|.+|
T Consensus 392 v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~ 471 (552)
T PRK09274 392 VAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRS 471 (552)
T ss_pred EecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCccccee
Confidence 9999999999999998887663 356 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCC---CCcccEEEEeCccCCC--CCCcccHHHHHcccCcC
Q 008895 470 AVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSP---YKKIRRVAFINAIPKS--AAGKILRMELRKVAVPS 543 (549)
Q Consensus 470 ~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~---~~~p~~i~~v~~lP~t--~~GKv~r~~l~~~~~~~ 543 (549)
+|+++++. .++.++++|+..++...+.+++.+.+++.+.. ++.|..++++++||+| ++|||+|++|++++.++
T Consensus 472 ~v~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~ 549 (552)
T PRK09274 472 ALVGVGVP-GAQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQ 549 (552)
T ss_pred EEEEeCCC-CCceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCccccccccccHHHHHHHHHHh
Confidence 99999875 45678889888776555666677766665554 4567789999999999 79999999999987653
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=562.24 Aligned_cols=498 Identities=27% Similarity=0.427 Sum_probs=428.7
Q ss_pred CCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 34 EDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
....+|+.+.+...+..+ |+++|+.+. ++.+||.||.++++++|++|.+ .|+++|++|+++++|+++++++++
T Consensus 13 ~~~~~n~~~~~~~~a~~~----~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~~ 85 (542)
T PRK07786 13 LARRQNWVNQLARHALMQ----PDAPALRFL--GNTTTWRELDDRVAALAGALSR-RGVGFGDRVLILMLNRTEFVESVL 85 (542)
T ss_pred cccccCHHHHHHHHHHHC----CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHH
Confidence 345689999999999999 999999987 7899999999999999999998 899999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCe-EEEecC------CchhhhhcccCCC
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDS------PEFDSMTMSWNSK 181 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~------~~~~~~~~~~~~~ 181 (549)
||+++|++++|+++..+.+++..+++.+++++++++......+... ... ++.++. ..+.++......
T Consensus 86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 164 (542)
T PRK07786 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGP- 164 (542)
T ss_pred HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhccCC-
Confidence 9999999999999999999999999999999999998766544321 111 222221 123333221111
Q ss_pred ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccE
Q 008895 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMET 261 (549)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~ 261 (549)
.........+++++++|||||||.||+|.++|+++...+......+.....++++++.+|++|.+|+...+.++..|++
T Consensus 165 -~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~ 243 (542)
T PRK07786 165 -AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAP 243 (542)
T ss_pred -CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCE
Confidence 1112234457899999999999999999999999998887766666333567899999999999999888899999999
Q ss_pred EEEec--CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 262 AVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 262 ~~~~~--~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+++.+ .+++..+++.++++++|.++++|+++..++......... .++|.+++||+++++++++.+.+.+++..+++.
T Consensus 244 ~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~ 322 (542)
T PRK07786 244 TVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQILAA 322 (542)
T ss_pred EEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEee
Confidence 98864 578999999999999999999999999998876543333 479999999999999999999999989999999
Q ss_pred cCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 419 (549)
||+||++.+.............+++|+|++++.++|+| ++++.++.|+.|||+++|+.++.||+++++.+...| .++|
T Consensus 323 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~ 400 (542)
T PRK07786 323 FGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGW 400 (542)
T ss_pred ecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCCc
Confidence 99999987765543333334567899999999999999 678899999999999999999999999999998888 5899
Q ss_pred eecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC-CCCHH
Q 008895 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS-SLNEA 498 (549)
Q Consensus 420 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~-~~~~~ 498 (549)
|+|||+++++++|.+++.||.+|+|+++|.+|++.+||++|.++|.|.+++|++.++...++.++++++..... ....+
T Consensus 401 ~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 480 (542)
T PRK07786 401 FHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLE 480 (542)
T ss_pred ccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999998877788888888876543 35678
Q ss_pred HHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 499 EIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 499 ~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
++.++++++++++++|..++++++||+|++||++|++|++++.+.
T Consensus 481 ~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 525 (542)
T PRK07786 481 DLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGAC 525 (542)
T ss_pred HHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998654
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=564.48 Aligned_cols=495 Identities=24% Similarity=0.368 Sum_probs=412.0
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
-++.+.+.+.++++ |+++|+++....+.+||.||.++++++|++|.+ .|+++||+|+++++|+.++++++|||++
T Consensus 16 ~~l~~~l~~~a~~~----p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~ 90 (534)
T PRK05852 16 PRIADLVEVAATRL----PEAPALVVTADRIAISYRDLARLVDDLAGQLTR-SGLLPGDRVALRMGSNAEFVVALLAASR 90 (534)
T ss_pred ccHHHHHHHHHHhC----CCCcEEEecCCCCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcHHHHHHHHHHHH
Confidence 47999999999999 999999876445689999999999999999998 9999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC--C-C-eEEEecCCc------hhhhhcc-cCCCccccc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL--K-H-RTILIDSPE------FDSMTMS-WNSKHELDR 186 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~-~-~~~~~~~~~------~~~~~~~-~~~~~~~~~ 186 (549)
+|++++|++|.++.+.+.++++.++++++|++.......... . . ..+.+.... +...... .........
T Consensus 91 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (534)
T PRK05852 91 ADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATST 170 (534)
T ss_pred cCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccCCCccccc
Confidence 999999999999999999999999999999876533221110 0 0 011111100 0000000 000000011
Q ss_pred cccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEe
Q 008895 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVM 265 (549)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~ 265 (549)
.....++.++++|||||||.||+|.++|+++..++......+ ....+|++++.+|++|.+++ ..++.++..|+++++.
T Consensus 171 ~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 249 (534)
T PRK05852 171 PEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLP 249 (534)
T ss_pred cCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeC
Confidence 112246789999999999999999999999998888777666 46788999999999999998 4567778888887775
Q ss_pred c--CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCC--CCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccC
Q 008895 266 Q--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (549)
Q Consensus 266 ~--~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG 341 (549)
. .+++..+++.|+++++|+++++|+++..+.+..... ...++++|.++++|+++++++++.+.+.+ +..+++.||
T Consensus 250 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG 328 (534)
T PRK05852 250 ARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFG 328 (534)
T ss_pred CCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccC
Confidence 4 478899999999999999999999999998765432 33578999999999999999999999998 788999999
Q ss_pred ccccccceecccCc------CCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccC
Q 008895 342 LTESTAGVFRTVGP------DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415 (549)
Q Consensus 342 ~tE~~~~~~~~~~~------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~ 415 (549)
+||++..+...... ......+..|. .+|++++++| ++++++++|+.|||+|+|+.++.||+++++.+...|
T Consensus 329 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~- 405 (534)
T PRK05852 329 MTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF- 405 (534)
T ss_pred ccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCcccchhhh-
Confidence 99998765532211 01112233444 6999999999 567899999999999999999999999999998888
Q ss_pred CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC
Q 008895 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL 495 (549)
Q Consensus 416 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~ 495 (549)
.+|||+|||+|++|++|++++.||++|+++.+|.+|+|.+||++|.++|+|.+++|++.++...++.++++++..+....
T Consensus 406 ~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~ 485 (534)
T PRK05852 406 TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPP 485 (534)
T ss_pred cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999988888999999998766667
Q ss_pred CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 496 NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 496 ~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+.+++.++++++|+.+++|..|+++++||+|++||++|++|++++.+
T Consensus 486 ~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 486 TAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred CHHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999998864
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=557.87 Aligned_cols=481 Identities=29% Similarity=0.436 Sum_probs=418.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+++++.|.+++.++ |+++|+.+. ++.+||.||.++++++|++|.+ .|+.+|++|+++++|+.++++++|||++
T Consensus 2 ~~~~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~ 74 (483)
T PRK03640 2 ETMPNWLKQRAFLT----PDRTAIEFE--EKKVTFMELHEAVVSVAGKLAA-LGVKKGDRVALLMKNGMEMILVIHALQQ 74 (483)
T ss_pred CcHHHHHHHHHHhC----CCceEEEeC--CeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 68999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|+++..+.+++..++++++++++++++.......... . ..+.++....... ........+++++++
T Consensus 75 ~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-~------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i 146 (483)
T PRK03640 75 LGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-S------VKFAELMNGPKEE-AEIQEEFDLDEVATI 146 (483)
T ss_pred CCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-c------ccHHHHhhccccc-CCCCCCCCCCCeEEE
Confidence 9999999999999999999999999999999876655433211 0 0133322221111 111223456889999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l 277 (549)
+|||||||.||+|.++|.++...+......+ +....++++..+|++|.+++...+.++..|+++++.+.+++..+++.+
T Consensus 147 ~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i 225 (483)
T PRK03640 147 MYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLL 225 (483)
T ss_pred EeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-CCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHH
Confidence 9999999999999999999988776666655 567889999999999999998788999999999999989999999999
Q ss_pred HHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCC
Q 008895 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357 (549)
Q Consensus 278 ~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~ 357 (549)
+++++|++.++|+++..+++..... ....++|.+++||+++++++.+.+++. ++++++.||+||++..++.......
T Consensus 226 ~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~ 302 (483)
T PRK03640 226 QTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDA 302 (483)
T ss_pred HHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccc
Confidence 9999999999999999998765432 334789999999999999999998875 7899999999998765444333333
Q ss_pred CCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEE
Q 008895 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIV 437 (549)
Q Consensus 358 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~ 437 (549)
....+++|+|++++++++.++ +++++.|+.|||+|+|++++.||+++++.+...| .++||+|||+++++++|++++.
T Consensus 303 ~~~~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~ 379 (483)
T PRK03640 303 LTKLGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVL 379 (483)
T ss_pred cccCCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEe
Confidence 445689999999999999984 3789999999999999999999999999988887 5899999999999999999999
Q ss_pred cccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEE
Q 008895 438 DRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRV 517 (549)
Q Consensus 438 GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i 517 (549)
||++|++|.+|.+|++.+||+++.++++|.++++++.+++..++.++++++.. ...+.+++.++++++|+.+++|..|
T Consensus 380 GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i 457 (483)
T PRK03640 380 DRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVTEEELRHFCEEKLAKYKVPKRF 457 (483)
T ss_pred ecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCCHHHHHHHHHHhccCCCCCcEE
Confidence 99999999999999999999999999999999999998877778888888754 3567899999999999999999999
Q ss_pred EEeCccCCCCCCcccHHHHHcccCc
Q 008895 518 AFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 518 ~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+++++||+|++||++|++|++++.+
T Consensus 458 ~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 458 YFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred EEeCCCCCCCccceeHHHHHHHHhh
Confidence 9999999999999999999998763
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-69 Score=565.72 Aligned_cols=498 Identities=23% Similarity=0.308 Sum_probs=403.0
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.+.+.++++ |+++|+++...+..+||+||.++++++|+.|.+ .|+++|++|+++++|++++++++|||++
T Consensus 14 ~~~~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~e~~~~~lA~~~ 88 (540)
T PRK05857 14 STVLDRVFEQARQQ----PEAIALRRCDGTSALRYRELVAEVGGLAADLRA-QSVSRGSRVLVISDNGPETYLSVLACAK 88 (540)
T ss_pred cchHHHHHHHHhhC----CCcEEEeecCCCceeeHHHHHHHHHHHHHHHHH-hCcCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 58999999999999 999999865335689999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCeEEEecCCchhhhhc-ccCCCccccccccCC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRTILIDSPEFDSMTM-SWNSKHELDRAKVCQ 191 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (549)
+|++++|+++.++.+++.++++.++++++|+++........+ ....+.++......... ..............+
T Consensus 89 ~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (540)
T PRK05857 89 LGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGS 168 (540)
T ss_pred cCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccccccccccCCCC
Confidence 999999999999999999999999999999987653222111 11233332211100000 000000011223456
Q ss_pred CCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhc---cCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCc
Q 008895 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (549)
Q Consensus 192 ~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~ 268 (549)
+++++++|||||||.||+|.++|+++.++...... .......+++.+..+|++|.++++..+.++..|+++++ ...
T Consensus 169 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~-~~~ 247 (540)
T PRK05857 169 EDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT-GGE 247 (540)
T ss_pred CCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEe-cCC
Confidence 88999999999999999999999999876543221 11134456889999999999999888889999998765 456
Q ss_pred CHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccc
Q 008895 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (549)
Q Consensus 269 ~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 348 (549)
++..+++.|+++++|+++++|+++..+++........++++|.+++||++++....+ +.+.+ ++++.+.||+||++..
T Consensus 248 ~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~TE~~~~ 325 (540)
T PRK05857 248 NTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCT 325 (540)
T ss_pred ChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHh-CCeeecccCCCcCCce
Confidence 889999999999999999999999999887765666789999999999999988775 44555 7899999999999865
Q ss_pred eecccCcCC---CCCCCccccccCCcEEEEEcCCCCCcC-----CCCCcceEEEecCCcccccCCCccccccccCCCCee
Q 008895 349 VFRTVGPDE---CRRWGSTGRLSAGLEAKIVDPETGDSL-----PPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420 (549)
Q Consensus 349 ~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~-----~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~ 420 (549)
......... ..+.+++|+|++|++++|+|++...++ +.|+.|||+|+|++++.||+++++.+.+.| .+|||
T Consensus 326 ~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~ 404 (540)
T PRK05857 326 ALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWV 404 (540)
T ss_pred eeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCce
Confidence 443222111 224578999999999999995544333 457899999999999999999999998888 48999
Q ss_pred ecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC-CHHH
Q 008895 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL-NEAE 499 (549)
Q Consensus 421 ~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~-~~~~ 499 (549)
+|||+|++|++|++++.||.||+||.+|++|+|.+||++|..||+|.+++|++.++...++.++++++..+.... ..++
T Consensus 405 ~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~ 484 (540)
T PRK05857 405 NTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARA 484 (540)
T ss_pred eccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHH
Confidence 999999999999999999999999999999999999999999999999999999987777888888876543221 1233
Q ss_pred ----HHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 500 ----IMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 500 ----i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+.++++++++++++|..++++++||+|++||++|++|++.+...+
T Consensus 485 l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~~ 533 (540)
T PRK05857 485 LKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATADK 533 (540)
T ss_pred HHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhcc
Confidence 444556779999999999999999999999999999999886543
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=572.96 Aligned_cols=505 Identities=19% Similarity=0.262 Sum_probs=402.0
Q ss_pred CCCCHHHHHhhc-ccCCCCCCCCCcEEEECCCC------ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH
Q 008895 36 APISAVDYVSSL-RATLPWRDDDTVALINSVTG------LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (549)
Q Consensus 36 ~~~~~~~~~~~~-~~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~ 108 (549)
..+|+.+.+.++ ++++ |+++|++....+ +++||+||.++++++|+.|++ +|+++||+|+++++|++++
T Consensus 172 ~~ln~~~~~l~~~~~~~----pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrVai~~pn~~e~ 246 (728)
T PLN03052 172 AVLNVAECCLTPKPSKT----DDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDA-LGFEKGDAIAIDMPMNVHA 246 (728)
T ss_pred CEeEHHHHHHHHHhccC----CCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHH
Confidence 347777755544 3556 999999875322 489999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH---------HHhc-CCCeEEEec-----------
Q 008895 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLAK-LKHRTILID----------- 167 (549)
Q Consensus 109 ~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~-~~~~~~~~~----------- 167 (549)
++++|||+++|++++|++|.++.+++.+++++++++++|+++.... .+.. ....++++.
T Consensus 247 via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~ 326 (728)
T PLN03052 247 VIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLR 326 (728)
T ss_pred HHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccc
Confidence 9999999999999999999999999999999999999999875321 1111 111122221
Q ss_pred --CCchhhhhcccCC---CccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecC
Q 008895 168 --SPEFDSMTMSWNS---KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242 (549)
Q Consensus 168 --~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~p 242 (549)
...|.++...... ..........++++++|+|||||||.||||+++|.+++.........+ ...++|+++..+|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-~l~~~d~~~~~~~ 405 (728)
T PLN03052 327 EGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-DIRKGDIVCWPTN 405 (728)
T ss_pred cCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-CCCCCcEEEECCC
Confidence 1123333221110 000111122458899999999999999999999999877665554444 4677899999999
Q ss_pred hhhHHHHHHHHHHhhhccEEEEecC-cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCH
Q 008895 243 YFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321 (549)
Q Consensus 243 l~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~ 321 (549)
+.|+++.+.++.++..|+++++.+. .+...+++.++++++|++.++|+++..|.+.......++++||.++++||++++
T Consensus 406 l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~ 485 (728)
T PLN03052 406 LGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSV 485 (728)
T ss_pred cHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCH
Confidence 9999998878899999999999864 456789999999999999999999999987654456678999999999999999
Q ss_pred HHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCC--cceEEEecCC-
Q 008895 322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK--EGELSIRGPT- 398 (549)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gel~v~g~~- 398 (549)
+...++.+.++...+.+.||+||++....... .......+++|.|.+|++++|+| +++++++.|+ .|||+++++.
T Consensus 486 ~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~-~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~ 563 (728)
T PLN03052 486 DDYLWLMSRAGYKPIIEYCGGTELGGGFVTGS-LLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMF 563 (728)
T ss_pred HHHHHHHHhcCCCCeEeeccChhhCcccccCC-CCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCC
Confidence 99988888775467899999999976543321 12233467899999999999999 7789999885 5999998653
Q ss_pred -cccccCCCccccccccC------CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHH-cCCCcceEE
Q 008895 399 -IMKGYVGEPEVTSATLL------PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLL-SHREVADAA 470 (549)
Q Consensus 399 -~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~ 470 (549)
...+|+++. .....|. ...||+|||++++|++|+++++||+||+||++|++|++.|||++|. .||+|.+++
T Consensus 564 ~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaa 642 (728)
T PLN03052 564 GASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETA 642 (728)
T ss_pred CCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEE
Confidence 335666653 2222232 1238999999999999999999999999999999999999999995 799999999
Q ss_pred EEeecCCCCC-ceeEEEEEeC--CCCCCCHHHHHH----HHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 471 VIPYPDEEAG-QMPMAFVVRQ--PHSSLNEAEIME----FVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 471 vv~~~~~~~~-~~~~~~v~~~--~~~~~~~~~i~~----~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
|++++++..+ +.+++||+++ ++...+.++|++ +++++|++++.|+.|+++++||+|++|||+|+.|++++.+.
T Consensus 643 Vvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~ 722 (728)
T PLN03052 643 AIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQE 722 (728)
T ss_pred EEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhh
Confidence 9999987665 8899999987 454456556555 46678899999999999999999999999999999999877
Q ss_pred CCCcCC
Q 008895 544 GSSCRL 549 (549)
Q Consensus 544 ~~~~~~ 549 (549)
...++|
T Consensus 723 ~~~~~~ 728 (728)
T PLN03052 723 LSRSKL 728 (728)
T ss_pred hhccCC
Confidence 655543
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=577.41 Aligned_cols=492 Identities=22% Similarity=0.273 Sum_probs=389.0
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEEC-----CCC--ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINS-----VTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~-----~~~--~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v 110 (549)
.|+.+++.+.++++ |+++|+... ..+ ..+||+||.++++++|++|++ +|+++||+|+|+++|++++++
T Consensus 45 ~t~~~~l~~~a~~~----pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~n~~e~~~ 119 (666)
T PLN02614 45 DSCWDVFRMSVEKY----PNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS-VGVKDEAKCGIYGANSPEWII 119 (666)
T ss_pred CcHHHHHHHHHHhC----CCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHH
Confidence 48999999999999 999999731 112 358999999999999999998 999999999999999999999
Q ss_pred HHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC------CC-eEEEecCC--------------
Q 008895 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KH-RTILIDSP-------------- 169 (549)
Q Consensus 111 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~-~~~~~~~~-------------- 169 (549)
++|||+++|+++||+++.++.+++.+++++++++++|++.+....+... .. .++.++..
T Consensus 120 ~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 199 (666)
T PLN02614 120 SMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLV 199 (666)
T ss_pred HHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcE
Confidence 9999999999999999999999999999999999999987655444211 01 23333321
Q ss_pred --chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC----CCCCCCcEEEEecCh
Q 008895 170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS----PKRVSPAVMLFTMPY 243 (549)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~----~~~~~~~~~~~~~pl 243 (549)
.++++....... ........++++++|+|||||||.||||++||+++++.+......+ .....+|++++.+|+
T Consensus 200 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl 278 (666)
T PLN02614 200 IYAWDEFLKLGEGK-QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPL 278 (666)
T ss_pred EEEHHHHHhhcccC-CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccH
Confidence 122222111100 1111234578999999999999999999999999998776544432 135678999999999
Q ss_pred hhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC----------------------
Q 008895 244 FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST---------------------- 301 (549)
Q Consensus 244 ~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~---------------------- 301 (549)
+|.+++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..+......
T Consensus 279 ~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 357 (666)
T PLN02614 279 AHIFDRVIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFG 357 (666)
T ss_pred HHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999865666778899988764 5899999999999999999999999877642100
Q ss_pred ---------CCC-------------CC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCC
Q 008895 302 ---------DGY-------------DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358 (549)
Q Consensus 302 ---------~~~-------------~l-~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~ 358 (549)
... .+ +++|.+++||+++++.+ .++.+.++++.+++.||+||++...+.... ...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~ 435 (666)
T PLN02614 358 NMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLP-DEL 435 (666)
T ss_pred HHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeecc-ccC
Confidence 000 01 58999999999999875 566676766899999999999765443221 222
Q ss_pred CCCCccccccCCcEEEEEcC-C-CCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEE
Q 008895 359 RRWGSTGRLSAGLEAKIVDP-E-TGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFI 436 (549)
Q Consensus 359 ~~~~~~G~~~~~~~~~i~d~-~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~ 436 (549)
...+++|+|+||++++|+|+ + .+.+++.|+.|||+|+||+++.|||++|+.|.+.| .+|||+|||+|++|+||++++
T Consensus 436 ~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i 514 (666)
T PLN02614 436 DMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHTGDVGEWQPNGSMKI 514 (666)
T ss_pred CcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCcccceEEEEcCCCCEEE
Confidence 34689999999999999983 3 24688999999999999999999999999999998 589999999999999999999
Q ss_pred EcccCCeeee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC----------CCC---------
Q 008895 437 VDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS----------SLN--------- 496 (549)
Q Consensus 437 ~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~----------~~~--------- 496 (549)
+||+||+||+ +|++|+|.+||++|.+||.|.+++|++.+. ...++++|++.... ..+
T Consensus 515 ~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~---~~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (666)
T PLN02614 515 IDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSF---ESFLVAIANPNQQILERWAAENGVSGDYNALCQNEK 591 (666)
T ss_pred EEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHH
Confidence 9999999997 799999999999999999999999998653 23688888865320 001
Q ss_pred -HHHHHHHH-----HhcCCCCCcccEEEEeC-cc-----CCCCCCcccHHHHHcccCc
Q 008895 497 -EAEIMEFV-----ARQVSPYKKIRRVAFIN-AI-----PKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 497 -~~~i~~~l-----~~~l~~~~~p~~i~~v~-~l-----P~t~~GKv~r~~l~~~~~~ 542 (549)
.+.+.+.+ +++|+.+.+++.|.++. ++ .+|+++|++|+.+.+.|.+
T Consensus 592 ~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~ 649 (666)
T PLN02614 592 AKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQS 649 (666)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHH
Confidence 12233333 35699999999888874 44 3799999999999887743
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-68 Score=563.93 Aligned_cols=499 Identities=30% Similarity=0.448 Sum_probs=427.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.+.++++ |+++|+++...++++||.||.++++++|+.|.+ .|+++|++|+++++|++++++++|||++
T Consensus 16 ~~l~~~l~~~~~~~----~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~ 90 (559)
T PRK08315 16 QTIGQLLDRTAARY----PDREALVYRDQGLRWTYREFNEEVDALAKGLLA-LGIEKGDRVGIWAPNVPEWVLTQFATAK 90 (559)
T ss_pred ccHHHHHHHHHHHC----CCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 68999999999999 999999886557899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH-----HHh----cC---------------CCeEEEecC-----
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-----KLA----KL---------------KHRTILIDS----- 168 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~----~~---------------~~~~~~~~~----- 168 (549)
+|++++|++|..+.+++..+++.+++++++++..... .+. +. ...++.++.
T Consensus 91 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (559)
T PRK08315 91 IGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPG 170 (559)
T ss_pred hCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCCcc
Confidence 9999999999999999999999999999999865321 111 00 001222221
Q ss_pred -CchhhhhcccCC----CccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecCh
Q 008895 169 -PEFDSMTMSWNS----KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY 243 (549)
Q Consensus 169 -~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl 243 (549)
..+.++...... ..........++++++++|||||||.||+|.++|+++..+.......+ ....+++++..+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~~~~~p~ 249 (559)
T PRK08315 171 MLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM-KLTEEDRLCIPVPL 249 (559)
T ss_pred cccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc-CCCCCceEEEecCc
Confidence 123332211100 001112234567899999999999999999999999988887766666 56788999999999
Q ss_pred hhHHHH-HHHHHHhhhccEEEE-ecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCH
Q 008895 244 FHIYGL-FFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321 (549)
Q Consensus 244 ~~~~g~-~~~~~~l~~g~~~~~-~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~ 321 (549)
+|.+++ ..++.++..|+++++ ...+++..+++.++++++|+++++|+++..++.........++++|.+++||++++.
T Consensus 250 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~ 329 (559)
T PRK08315 250 YHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPI 329 (559)
T ss_pred HHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCH
Confidence 999988 557788889999884 446899999999999999999999999988887766556678999999999999999
Q ss_pred HHHHHHHHhCCCCcEEcccCccccccceecccCcC-CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcc
Q 008895 322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD-ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (549)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~ 400 (549)
++.+.+.+.++...+++.||+||++.+++...... ......++|+|++++.++|+|+++++.++.|+.|||+|+|+.++
T Consensus 330 ~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~ 409 (559)
T PRK08315 330 EVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVM 409 (559)
T ss_pred HHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhh
Confidence 99999999996667999999999987665433222 22346789999999999999987799999999999999999999
Q ss_pred cccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCC
Q 008895 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480 (549)
Q Consensus 401 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~ 480 (549)
.||+++++.+...|..++||+|||+|+++++|.+++.||.+|+++++|++|++.+||++|.++++|.+++|++.++...+
T Consensus 410 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~ 489 (559)
T PRK08315 410 KGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYG 489 (559)
T ss_pred hhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCC
Confidence 99999999998888778999999999999999999999999999999999999999999999999999999999988778
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 481 QMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 481 ~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+.++++|+...+...+.+++.++++++++.|++|..++++++||+|++||++|++|++++..
T Consensus 490 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~ 551 (559)
T PRK08315 490 EEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIE 551 (559)
T ss_pred eEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHh
Confidence 88899998877666788999999999999999999999999999999999999999998654
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-68 Score=568.64 Aligned_cols=494 Identities=19% Similarity=0.210 Sum_probs=395.3
Q ss_pred CCCCHHHHHhhcccCCCCCCCCCcEEEECCC---CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHH
Q 008895 36 APISAVDYVSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (549)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~ 112 (549)
..+|+.+.+.++ . ++++|++.... .+++||+||.++++++|+.|++ +|+++||+|+++++|++++++++
T Consensus 85 ~~~n~~~~~~~~---~----~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrV~i~~~n~~e~~~~~ 156 (652)
T TIGR01217 85 ARLNYAENLLRA---A----GTEPALLYVDETHEPAPVTWAELRRQVASLAAALRA-LGVRPGDRVSGYLPNIPQAVVAM 156 (652)
T ss_pred CeeeHHHHHhcc---C----CCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHH
Confidence 347888877763 4 56788765321 2589999999999999999998 89999999999999999999999
Q ss_pred HHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH---------HHHh----cCC--CeEEEecC---------
Q 008895 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA----KLK--HRTILIDS--------- 168 (549)
Q Consensus 113 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~----~~~--~~~~~~~~--------- 168 (549)
|||+++|++++|+++.++.+++.+++++++++++|+++... ..+. ... ..++.++.
T Consensus 157 lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 236 (652)
T TIGR01217 157 LATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAP 236 (652)
T ss_pred HHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccc
Confidence 99999999999999999999999999999999999976531 2111 111 12333221
Q ss_pred -----CchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHH-HHhhccCCCCCCCcEEEEecC
Q 008895 169 -----PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-ASSFASSPKRVSPAVMLFTMP 242 (549)
Q Consensus 169 -----~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~-~~~~~~~~~~~~~~~~~~~~p 242 (549)
..++++..... ...........+++++|+|||||||.||||+++|.+++... ......+ ...++|++++.+|
T Consensus 237 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~~~ 314 (652)
T TIGR01217 237 KIDGALDLEDFTAAAQ-AAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-DLGPGDRLFYYTT 314 (652)
T ss_pred cccCcccHHHHHhccc-CCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-CCCCCcEEEEeCC
Confidence 11233222110 00111223456889999999999999999999999875433 3333333 4677899999999
Q ss_pred hhhHHHHHHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEec
Q 008895 243 YFHIYGLFFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGA 316 (549)
Q Consensus 243 l~~~~g~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~G 316 (549)
+.|+.+ ..++.++..|+++++.+. .++..++++++++++|++..+|.++..+..... ....++++||.+++||
T Consensus 315 ~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gG 393 (652)
T TIGR01217 315 TGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTG 393 (652)
T ss_pred cchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeec
Confidence 998754 335578999999999752 378899999999999999888887777665321 2345689999999999
Q ss_pred CCCCHHHHHHHHHhCC-CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEe
Q 008895 317 APLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (549)
Q Consensus 317 e~l~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (549)
+++++++.+++.+.++ +..+.+.||+||++...... ........+++|.|.+|++++|+| ++++++ .|+.|||+++
T Consensus 394 e~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~-~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v~ 470 (652)
T TIGR01217 394 SPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGA-NPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELVCT 470 (652)
T ss_pred CCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCC-CCCCCCcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEEEe
Confidence 9999999999999883 35677899999975433221 122233457889999999999999 567777 5999999999
Q ss_pred cC--CcccccCCCccccc--cc-cC-CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceE
Q 008895 396 GP--TIMKGYVGEPEVTS--AT-LL-PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA 469 (549)
Q Consensus 396 g~--~~~~gy~~~~~~~~--~~-~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~ 469 (549)
|+ +++.|||++++.+. .. |. .+|||+|||+|++|+||++++.||+||+||.+|++|+|.|||++|.+||+|.++
T Consensus 471 gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~ea 550 (652)
T TIGR01217 471 NPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRES 550 (652)
T ss_pred cCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceE
Confidence 96 68999999998654 12 21 268899999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 470 AVIPYPDEEAGQMPMAFVVRQPHSSLNE---AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 470 ~vv~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
+|++++++..++.+++||+++++...+. ++|+++++++|++++.|+.|+++++||+|++|||+|+.||+++...
T Consensus 551 avvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~ 627 (652)
T TIGR01217 551 LCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGT 627 (652)
T ss_pred EEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCC
Confidence 9999999888999999999987655444 5899999999999999999999999999999999999999997544
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=553.49 Aligned_cols=488 Identities=25% Similarity=0.339 Sum_probs=414.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.+.+.+. ++++|++.. ++.+||.||.++++++|++|++..|++++++|+++++|+++++++++||++
T Consensus 5 ~~~~~~l~~~a~------~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~ 76 (529)
T PRK07867 5 PTVAELLLPLAE------DDDRGLYFE--DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAAL 76 (529)
T ss_pred ccHHHHHHHhcc------cCCceEEEC--CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 578888887763 678899887 789999999999999999999833899999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC--CCeEEEecCCchhhhhcccCCCccccccccCCCCEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL--KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (549)
+|++++|+++..+.+++..++++++++++++++.....+... ...++.++...+.+........ ........+++++
T Consensus 77 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 155 (529)
T PRK07867 77 SGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRDA-EPPFRVADPDDLF 155 (529)
T ss_pred cCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEeccccHHHHhcccCCC-CCCcccCCccceE
Confidence 999999999999999999999999999999998877655543 2334444443444433221111 1112234678899
Q ss_pred EEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH-HHHHHhhhccEEEEecCcCHHHHH
Q 008895 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMML 274 (549)
Q Consensus 196 ~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~g~~~~~~~~~~~~~~~ 274 (549)
+++|||||||.||+|+++|+++..+.......+ +....|+++..+|++|.+++. ..+.++..|+++++.+.+++..++
T Consensus 156 ~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~ 234 (529)
T PRK07867 156 MLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-GLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFL 234 (529)
T ss_pred EEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-CCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHH
Confidence 999999999999999999999988887776666 467789999999999999884 455678899999888888999999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.++++++|++.++|+.+..++..........+++|. ++||+.+++.. .++.+.+ ++++++.||+||++..+....
T Consensus 235 ~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~~- 310 (529)
T PRK07867 235 PDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRTP- 310 (529)
T ss_pred HHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccCC-
Confidence 9999999999999999999888765433333467774 56888887764 6777777 789999999999986544321
Q ss_pred cCCCCCCCccccccCCcEEEEEcCCCCCcCCCCC------------cceEEE-ecCCcccccCCCccccccccCCCCeee
Q 008895 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK------------EGELSI-RGPTIMKGYVGEPEVTSATLLPDGWMR 421 (549)
Q Consensus 355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~------------~Gel~v-~g~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (549)
....+++|.|+++ ++++|++++.+++.|+ .|||++ +|++++.||+++++.+...| .+|||+
T Consensus 311 ---~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~ 384 (529)
T PRK07867 311 ---DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYW 384 (529)
T ss_pred ---CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEe
Confidence 1244688999999 7788877888898888 899999 99999999999999988877 589999
Q ss_pred cCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 008895 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIM 501 (549)
Q Consensus 422 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 501 (549)
|||+|+++++|++++.||.||+++++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..++...+.+++.
T Consensus 385 TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~ 464 (529)
T PRK07867 385 SGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFA 464 (529)
T ss_pred eccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999998877778899999
Q ss_pred HHHHhc--CCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 502 EFVARQ--VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 502 ~~l~~~--l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
++++++ |+++++|..|+++++||+|++||++|++|++++.....
T Consensus 465 ~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~~~~ 510 (529)
T PRK07867 465 EFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVDCAD 510 (529)
T ss_pred HHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCCCCC
Confidence 999875 99999999999999999999999999999999977654
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-68 Score=558.47 Aligned_cols=498 Identities=28% Similarity=0.435 Sum_probs=421.8
Q ss_pred CCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHH
Q 008895 36 APISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (549)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~ 115 (549)
.++|+.+++...++++ |+++|+++. ++++||.||.++++++|+.|++ .|+++|++|+++++|+++++++++||
T Consensus 5 ~~~~~~~~~~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~ 77 (528)
T PRK07470 5 RVMNLAHFLRQAARRF----PDRIALVWG--DRSWTWREIDARVDALAAALAA-RGVRKGDRILVHSRNCNQMFESMFAA 77 (528)
T ss_pred cCCCHHHHHHHHHHHC----CCceEEEEC--CccccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 4589999999999999 999999987 7899999999999999999998 89999999999999999999999999
Q ss_pred HHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC------CCeEEEecC----CchhhhhcccCCCcccc
Q 008895 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDS----PEFDSMTMSWNSKHELD 185 (549)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~ 185 (549)
+++|++++|+++..+.+++.++++.++++.++++....+..... ....+.++. ..+.++....... ...
T Consensus 78 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 156 (528)
T PRK07470 78 FRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARHLGA-RVA 156 (528)
T ss_pred HhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhcCCCC-CCC
Confidence 99999999999999999999999999999999998765443321 112333322 1233332221111 111
Q ss_pred ccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC-CCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEE
Q 008895 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV 264 (549)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~ 264 (549)
.....++++++++|||||||.||+|.++|+++...+....... ......++++..+|++|.+++...+ .+..|++.++
T Consensus 157 ~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~ 235 (528)
T PRK07470 157 NAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVL 235 (528)
T ss_pred cccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEE
Confidence 2234568899999999999999999999999976554332222 2346778999999999999886544 5667777766
Q ss_pred ec--CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCc
Q 008895 265 MQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (549)
Q Consensus 265 ~~--~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~ 342 (549)
.. .+++..+++.|+++++|++.++|+++..+.+........++++|.+++||+++++...+++.+.+ +..+++.||+
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~ 314 (528)
T PRK07470 236 LPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGL 314 (528)
T ss_pred ecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCC
Confidence 54 47899999999999999999999999999887766666789999999999999999999999888 6789999999
Q ss_pred cccccceecccCc------CCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC
Q 008895 343 TESTAGVFRTVGP------DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416 (549)
Q Consensus 343 tE~~~~~~~~~~~------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~ 416 (549)
||++..+...... ......+++|.|++++.++++| +++++++.|+.|||+++|+.++.||+++++.+...| .
T Consensus 315 TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~ 392 (528)
T PRK07470 315 GEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-R 392 (528)
T ss_pred cccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-c
Confidence 9988765432110 0122447889999999999999 678899999999999999999999999999988877 5
Q ss_pred CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCC
Q 008895 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLN 496 (549)
Q Consensus 417 ~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~ 496 (549)
++||+|||+|+++++|++++.||.||++|++|++|+|.+||++|.+++.|.+++|++.++...++.++++++..+....+
T Consensus 393 ~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (528)
T PRK07470 393 DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVD 472 (528)
T ss_pred CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999887788888898887665678
Q ss_pred HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 497 EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 497 ~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
.++++++++++|+++++|..++++++||+|++||++|+.|++++++.++
T Consensus 473 ~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~~ 521 (528)
T PRK07470 473 EAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEERGL 521 (528)
T ss_pred HHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999887765
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-68 Score=562.04 Aligned_cols=499 Identities=28% Similarity=0.416 Sum_probs=424.2
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.+.++++ |+++|++....++.+||.||.++++++|++|.+ .|+++|++|+++++|++++++++|||++
T Consensus 18 ~~l~~~l~~~~~~~----p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~~a~~~ 92 (558)
T PRK12583 18 QTIGDAFDATVARF----PDREALVVRHQALRYTWRQLADAVDRLARGLLA-LGVQPGDRVGIWAPNCAEWLLTQFATAR 92 (558)
T ss_pred CcHHHHHHHHHHHC----CCCeEEEecCCCcEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 68999999999999 999999886557899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH-----HHHh----cC--------------CC-eEEEecCC----
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLA----KL--------------KH-RTILIDSP---- 169 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~----~~--------------~~-~~~~~~~~---- 169 (549)
+|++++++++.++.+++.+++++++++++|+++... ..+. .. .. ..+..+..
T Consensus 93 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (558)
T PRK12583 93 IGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPG 172 (558)
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCcc
Confidence 999999999999999999999999999999976432 1111 00 00 11111110
Q ss_pred --chhhhhcccCCC----ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecCh
Q 008895 170 --EFDSMTMSWNSK----HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY 243 (549)
Q Consensus 170 --~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl 243 (549)
.|++........ .........+++.++++|||||||.||+|.++|+++.++.......+ +...++++++.+|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~~~~~p~ 251 (558)
T PRK12583 173 FLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL-GLTEHDRLCVPVPL 251 (558)
T ss_pred ccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh-CCCCCCeEEEecCc
Confidence 122211110000 00011223567899999999999999999999999988887766665 46778999999999
Q ss_pred hhHHHH-HHHHHHhhhccEEEEe-cCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCH
Q 008895 244 FHIYGL-FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321 (549)
Q Consensus 244 ~~~~g~-~~~~~~l~~g~~~~~~-~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~ 321 (549)
+|.+|+ ...+.++..|+++++. ..+++..+++.+.++++|+++++|+++..++........+++++|.+++||+++++
T Consensus 252 ~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~ 331 (558)
T PRK12583 252 YHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPI 331 (558)
T ss_pred hhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCH
Confidence 999998 5567778888888864 35789999999999999999999999988887765556678999999999999999
Q ss_pred HHHHHHHHhCCCCcEEcccCccccccceecccCc-CCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcc
Q 008895 322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (549)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~ 400 (549)
++.+++.+.+++..+.+.||+||++.++...... ......+++|.|.+++.++|+|++ +.+++.|+.|||+|+|+.++
T Consensus 332 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~ 410 (558)
T PRK12583 332 EVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVM 410 (558)
T ss_pred HHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCccc
Confidence 9999999999777899999999999876653221 122345789999999999999966 89999999999999999999
Q ss_pred cccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCC
Q 008895 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480 (549)
Q Consensus 401 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~ 480 (549)
.||+++++.+...|..++||+|||+|+++++|++++.||++|+++++|.+|+|.+||++|..+++|.+++|++.++...+
T Consensus 411 ~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~ 490 (558)
T PRK12583 411 KGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYG 490 (558)
T ss_pred hhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCC
Confidence 99999999988888778999999999999999999999999999999999999999999999999999999999988778
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 481 QMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 481 ~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
+.++++++..+....+.++++++++++|+.+++|..++++++||+|++||++|++|++++.+.
T Consensus 491 ~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~ 553 (558)
T PRK12583 491 EEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEE 553 (558)
T ss_pred cEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhh
Confidence 899999998776667789999999999999999999999999999999999999999987654
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-68 Score=554.22 Aligned_cols=490 Identities=28% Similarity=0.417 Sum_probs=424.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
-++.+.+.+++ .+ |+++|+.+. .++.+||.||.++++++|++|++ .|+++||+|+++++|+.+++++++||++
T Consensus 3 ~~l~~~~~~~~-~~----~~~~a~~~~-~~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~v~i~~~~~~e~~v~~la~~~ 75 (504)
T PRK07514 3 NNLFDALRAAF-AD----RDAPFIETP-DGLRYTYGDLDAASARLANLLVA-LGVKPGDRVAVQVEKSPEALALYLATLR 75 (504)
T ss_pred ccHHHHHHHHh-hC----CCCeEEEeC-CCCEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 47899999999 88 999999874 36899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCe-EEEecCCc---hhhhhcccCCCcccccccc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDSPE---FDSMTMSWNSKHELDRAKV 189 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 189 (549)
+|++++|+++..+.+++..+++.+++++++++......+... +.. ++.++... +.+...... . .......
T Consensus 76 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 153 (504)
T PRK07514 76 AGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAP-D-DFETVPR 153 (504)
T ss_pred cCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcC-c-ccCcccC
Confidence 999999999999999999999999999999998766554322 222 33333211 111111100 0 1112234
Q ss_pred CCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCc
Q 008895 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRF 268 (549)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~ 268 (549)
.++++++++|||||||.||+|.++|+++..........+ ...+++++++.+|++|..++ ...+.++..|+++++.+..
T Consensus 154 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~ 232 (504)
T PRK07514 154 GADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-RFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKF 232 (504)
T ss_pred CCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCC
Confidence 578899999999999999999999999998877666555 46778899999999999998 4567889999999998888
Q ss_pred CHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccc
Q 008895 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (549)
Q Consensus 269 ~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 348 (549)
++..+++.+ .++|+++++|+++..++.........++++|.+++||+++++++.+.+.+.+ +.++++.||+||++..
T Consensus 233 ~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~ 309 (504)
T PRK07514 233 DPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMN 309 (504)
T ss_pred CHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeeccccccccc
Confidence 999999999 4799999999999999887665666688999999999999999999999988 6789999999999865
Q ss_pred eecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEE
Q 008895 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428 (549)
Q Consensus 349 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~ 428 (549)
.... .......+++|.|+++++++|+|++++++++.|+.|||+|+|+.++.||+++++.+.+.|..++||+|||++++
T Consensus 310 ~~~~--~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~ 387 (504)
T PRK07514 310 TSNP--YDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI 387 (504)
T ss_pred ccCC--ccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEE
Confidence 4432 12223457899999999999999899999999999999999999999999999999999988999999999999
Q ss_pred ecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC
Q 008895 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQV 508 (549)
Q Consensus 429 ~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l 508 (549)
+++|.+++.||+||++|.+|++|+|.+||+++.++++|.+++|++.++...++.++++++..+....+.+++.++++++|
T Consensus 388 ~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 467 (504)
T PRK07514 388 DERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRL 467 (504)
T ss_pred cCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999998877788899999988777778899999999999
Q ss_pred CCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 509 SPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 509 ~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+++++|..+++++++|+|++||++|++|++++.+
T Consensus 468 ~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~ 501 (504)
T PRK07514 468 ARFKQPKRVFFVDELPRNTMGKVQKNLLREQYAD 501 (504)
T ss_pred ccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence 9999999999999999999999999999988653
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=555.21 Aligned_cols=487 Identities=28% Similarity=0.401 Sum_probs=416.6
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
..++.+.+.+.++++ |+++|+++. ++++||.||.++++++|..|.+ .|+++|++|+++++|+.+++++++||+
T Consensus 22 ~~~l~~~~~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~~ 94 (527)
T TIGR02275 22 DKPLTDILRDQAARY----PDAIAIICG--NRQWSYRELDQRADNLAAGLTK-LGIGQGDTAVVQLPNIAEFYIVFFALL 94 (527)
T ss_pred CCcHHHHHHHHHHHC----CCceEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence 358999999999988 999999987 7899999999999999999998 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH--------HHHhc-C-CCeEEEecC-C----chhhhhcccCCC
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAK-L-KHRTILIDS-P----EFDSMTMSWNSK 181 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~-~-~~~~~~~~~-~----~~~~~~~~~~~~ 181 (549)
++|++++++++..+.+++.++++.+++++++++.... ..+.. . ....+.+.. . .......... .
T Consensus 95 ~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 173 (527)
T TIGR02275 95 KLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLESPA-E 173 (527)
T ss_pred HcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhCcC-c
Confidence 9999999999999999999999999999999986531 11111 1 112222211 1 1111111110 0
Q ss_pred ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH--HHHHHhhhc
Q 008895 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALM 259 (549)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~g 259 (549)
........++++++++|||||||.||+|.++|.++..++......+ ....+++++..+|++|.+++. ..+.++..|
T Consensus 174 -~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G 251 (527)
T TIGR02275 174 -PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-WLTQQTRYLCALPAAHNYPLSSPGALGVFYAG 251 (527)
T ss_pred -cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCCEEEECCChHhhhhhhHHHHHHHHhcC
Confidence 1112234678999999999999999999999999998887766655 467789999999999999884 477889999
Q ss_pred cEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+++++.+.+++..+++.++++++|+++++|+++..+++........++++|.+++||+++++++.+++.+.+ ++++++.
T Consensus 252 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~ 330 (527)
T TIGR02275 252 GCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQV 330 (527)
T ss_pred CeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEee
Confidence 999998888999999999999999999999999999887766666788999999999999999999999988 7899999
Q ss_pred cCccccccceecccCcCCCCCCCcccccc-CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~ 418 (549)
||+||++..... .........+++|+|+ ++..++++| +++++++.|+.|||+++|+.++.||+++++.+...|..+|
T Consensus 331 YG~tE~~~~~~~-~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg 408 (527)
T TIGR02275 331 FGMAEGLVNYTR-LDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEG 408 (527)
T ss_pred eccCccCccccC-CCCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCC
Confidence 999996543322 1112223446889999 588999999 6788999999999999999999999999999999998899
Q ss_pred eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 008895 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEA 498 (549)
Q Consensus 419 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~ 498 (549)
||+|||+|+++++|++++.||.+|+|+.+|++|+|.+||++|.++|+|.+++|++.++...++.++++++..+. ..+.+
T Consensus 409 ~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~~~~~ 487 (527)
T TIGR02275 409 FYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-ALKAA 487 (527)
T ss_pred CEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-CCCHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999988754 46789
Q ss_pred HHHHHHHhc-CCCCCcccEEEEeCccCCCCCCcccHHHHH
Q 008895 499 EIMEFVARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELR 537 (549)
Q Consensus 499 ~i~~~l~~~-l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~ 537 (549)
+|+++++++ ++++++|..++++++||+|++||++|++|+
T Consensus 488 ~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 488 QLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred HHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 999999985 999999999999999999999999999875
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-68 Score=561.81 Aligned_cols=493 Identities=27% Similarity=0.419 Sum_probs=402.2
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
+.++.+++...++++ |+++|++.. +.++||+||.++++++|++|.+ +|+++||+|+|+++|++++++++|||+
T Consensus 13 ~~~~~~~l~~~~~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~-~Gl~~gd~Vai~~~n~~e~~~~~la~~ 85 (579)
T PLN03102 13 PLTPITFLKRASECY----PNRTSIIYG--KTRFTWPQTYDRCCRLAASLIS-LNITKNDVVSVLAPNTPAMYEMHFAVP 85 (579)
T ss_pred cccHHHHHHHHHHhC----CCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 368889999889888 999999987 7899999999999999999999 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----------CCeEEEecCC-----------chhhh
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----------KHRTILIDSP-----------EFDSM 174 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~ 174 (549)
++|++++|++|.++.+++.++++.++++++|++++..+.+.+. ..+++.++.. .+.++
T Consensus 86 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (579)
T PLN03102 86 MAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECL 165 (579)
T ss_pred hcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHH
Confidence 9999999999999999999999999999999988765544321 2234444321 11222
Q ss_pred hcccCCCccc---cccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHH
Q 008895 175 TMSWNSKHEL---DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251 (549)
Q Consensus 175 ~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~ 251 (549)
.......... ......++++++++|||||||.||+|+++|+++........... .....++++..+|++|.+++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~ 244 (579)
T PLN03102 166 IQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-EMGTCPVYLWTLPMFHCNGWTF 244 (579)
T ss_pred HhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-CCCCCCeEEecCChhhhcchhH
Confidence 1111100000 01123467899999999999999999999999755443333222 2455678899999999999877
Q ss_pred HHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhC
Q 008895 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331 (549)
Q Consensus 252 ~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~ 331 (549)
.+.++..|++++....+++..+++.|+++++|+++++|+++..|.+.........++++.+++||+++++.+.+++.+ +
T Consensus 245 ~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~ 323 (579)
T PLN03102 245 TWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L 323 (579)
T ss_pred HHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c
Confidence 778888999999988888999999999999999999999999998865433334567888999999999999999876 4
Q ss_pred CCCcEEcccCccccccceecccCcCC------------CCCCCccccccCCcEEEEEcCCCCCcCCC--CCcceEEEecC
Q 008895 332 PKVVLVQAYGLTESTAGVFRTVGPDE------------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGP 397 (549)
Q Consensus 332 ~~~~l~~~yG~tE~~~~~~~~~~~~~------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~g~ 397 (549)
++.+++.||+||++..++....... ....+..+.+++ .+.+++.+.+++++. ++.|||+|+|+
T Consensus 324 -g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~ 400 (579)
T PLN03102 324 -GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGS 400 (579)
T ss_pred -CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECc
Confidence 7899999999999865433211100 011223333333 455666566777764 36799999999
Q ss_pred CcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCC
Q 008895 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477 (549)
Q Consensus 398 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~ 477 (549)
+++.||+++++.+...| .+|||+|||+|++|++|++++.||.+|+|+.+|++|+|.+||++|.+||.|.+++|++++++
T Consensus 401 ~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 479 (579)
T PLN03102 401 SIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHP 479 (579)
T ss_pred chhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCc
Confidence 99999999999998888 58999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEEEEeCCCCCC----------CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 478 EAGQMPMAFVVRQPHSSL----------NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 478 ~~~~~~~~~v~~~~~~~~----------~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
..++.++++|++.++... ..++++++++++|+.|++|..++++++||+|++||++|++|++++.+
T Consensus 480 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~ 554 (579)
T PLN03102 480 TWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKG 554 (579)
T ss_pred cccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence 888999999998755432 35789999999999999999999999999999999999999998743
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-68 Score=557.14 Aligned_cols=493 Identities=27% Similarity=0.416 Sum_probs=430.2
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+++...++++ |+++|+.+. ++.+||.||.+++.++|+.|.+ .|+++|++|+++++|+.+++++++||++
T Consensus 11 ~~l~~~l~~~a~~~----~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gi~~~~~V~l~~~~~~~~~~~~~a~~~ 83 (523)
T PRK08316 11 QTIGDILRRSARRY----PDKTALVFG--DRSWTYAELDAAVNRVAAALLD-LGLKKGDRVAALGHNSDAYALLWLACAR 83 (523)
T ss_pred CCHHHHHHHHHHHC----CCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 57999999999999 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCeEEEec-----------CCchhhhhcccCCCc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILID-----------SPEFDSMTMSWNSKH 182 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~-----------~~~~~~~~~~~~~~~ 182 (549)
+|++++|+++..+.+++.++++.+++++++++......+.+. ....+... ...+.........
T Consensus 84 ~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 161 (523)
T PRK08316 84 AGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSV-- 161 (523)
T ss_pred cCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCC--
Confidence 999999999999999999999999999999998776655421 11111100 0112222111110
Q ss_pred cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH-HHHHHhhhccE
Q 008895 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMET 261 (549)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~g~~ 261 (549)
.........+++++++|||||||.||+|.++|.++..........+ ...++++++..+|++|.+++. .++.++..|++
T Consensus 162 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~ 240 (523)
T PRK08316 162 AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSADDIPLHALPLYHCAQLDVFLGPYLYVGAT 240 (523)
T ss_pred ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCCceEEEccCCchhhhHHHHHHHHHhcCce
Confidence 1122345668899999999999999999999999998877766666 467889999999999999884 45567889999
Q ss_pred EEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccC
Q 008895 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (549)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG 341 (549)
+++.+..++..+++.++++++|+++++|+++..+++........++++|.+++||++++.++.+.+++.+++..+++.||
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG 320 (523)
T PRK08316 241 NVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYG 320 (523)
T ss_pred EEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeec
Confidence 99998889999999999999999999999999999877666667899999999999999999999999998899999999
Q ss_pred ccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 008895 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (549)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (549)
+||++.++............+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||+++++.+...| .++||+
T Consensus 321 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~ 398 (523)
T PRK08316 321 QTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFH 398 (523)
T ss_pred ccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCee
Confidence 999988766543333334567899999999999999 668999999999999999999999999999888887 589999
Q ss_pred cCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHH
Q 008895 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIM 501 (549)
Q Consensus 422 TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 501 (549)
|||+|+++++|.+++.||.||+++++|++|+|.+||+.|.++++|.+++|++.+++..++.++++++..+....+.+++.
T Consensus 399 TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 478 (523)
T PRK08316 399 SGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELI 478 (523)
T ss_pred ccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888899999998876667788999
Q ss_pred HHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 502 EFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 502 ~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++++++|+.+++|..+++++++|+|++||++|++|++++.+
T Consensus 479 ~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 519 (523)
T PRK08316 479 AHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAG 519 (523)
T ss_pred HHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999864
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=554.84 Aligned_cols=491 Identities=27% Similarity=0.409 Sum_probs=416.4
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
.++.+.+...++.+ |+++|++.. ..+..+||.||+++++++|.+|++ .|+++|++|+++++|+.+++++++
T Consensus 22 ~~~~~~~~~~~~~~----p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~l 96 (538)
T TIGR03208 22 RTINDHFDAAVANC----PDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLAR-LGVGRGDVVSFQLPNRWEFTALYL 96 (538)
T ss_pred CcHHHHHHHHHHHC----CCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHH
Confidence 58999999999999 999998752 124689999999999999999998 899999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH-----HHH---hc-C-C-CeEEEecCC---chhhhhcccC
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKL---AK-L-K-HRTILIDSP---EFDSMTMSWN 179 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~---~~-~-~-~~~~~~~~~---~~~~~~~~~~ 179 (549)
||+++|++++|++|.++.+++.++++.++++++++++... ... .. . . ..++..+.. .++.......
T Consensus 97 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (538)
T TIGR03208 97 ACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPE 176 (538)
T ss_pred HHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHHHHhhccc
Confidence 9999999999999999999999999999999999987542 111 11 1 1 123333321 2332221110
Q ss_pred --CCcc----ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHH
Q 008895 180 --SKHE----LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFC 252 (549)
Q Consensus 180 --~~~~----~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~ 252 (549)
.... .......+++.++++|||||||.||+|+++|+++...+......+ ....++++++.+|++|.+++ ...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~ 255 (538)
T TIGR03208 177 RDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-ELGGGDVILMASPMAHQTGFMYGL 255 (538)
T ss_pred cccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-CCCCCCeEEEeCCchhHHHHHHHH
Confidence 0000 011234668999999999999999999999999998887776666 46778999999999999887 567
Q ss_pred HHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCC
Q 008895 253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332 (549)
Q Consensus 253 ~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~ 332 (549)
+.++..|+++++.+.+++..+++.++++++|++.++|+++..++.........++++|.+++||+++++++.+++.+.+
T Consensus 256 ~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~- 334 (538)
T TIGR03208 256 MMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL- 334 (538)
T ss_pred HHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc-
Confidence 8889999999988888999999999999999999999999988876544455688999999999999999999999988
Q ss_pred CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCcccccc
Q 008895 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412 (549)
Q Consensus 333 ~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~ 412 (549)
++.+++.||+||++.+..............++|+|+++++++|+| +++.+++.|+.|||+++|+.++.||+++++.+.
T Consensus 335 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~- 412 (538)
T TIGR03208 335 GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS- 412 (538)
T ss_pred CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCccccc-
Confidence 789999999999987665433222222245789999999999999 668889999999999999999999999988765
Q ss_pred ccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCC
Q 008895 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH 492 (549)
Q Consensus 413 ~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~ 492 (549)
+..+|||+|||+|+++++|.+++.||.+|+++.+|++|+|.+||++|.++|+|.+++|++.++...++.+++++++...
T Consensus 413 -~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~ 491 (538)
T TIGR03208 413 -TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPG 491 (538)
T ss_pred -ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCC
Confidence 3468999999999999999999999999999999999999999999999999999999999988888999999998876
Q ss_pred CCCCHHHHHHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHc
Q 008895 493 SSLNEAEIMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538 (549)
Q Consensus 493 ~~~~~~~i~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~ 538 (549)
...+.+++.+++++ +++.+++|..++++++||+|++||++|++|++
T Consensus 492 ~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~~ 538 (538)
T TIGR03208 492 CTLDFAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLRE 538 (538)
T ss_pred CCCCHHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhcC
Confidence 66788899999985 79999999999999999999999999999874
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=550.01 Aligned_cols=474 Identities=26% Similarity=0.427 Sum_probs=403.2
Q ss_pred CCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHH
Q 008895 56 DDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135 (549)
Q Consensus 56 p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~ 135 (549)
|+++|+.+...+..+||.||.++++++|++|.+ .|+++|++|+++++|++++++++|||+++|++++|+++..+.+.+.
T Consensus 9 p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~ 87 (488)
T PRK09088 9 PQRLAAVDLALGRRWTYAELDALVGRLAAVLRR-RGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELD 87 (488)
T ss_pred CCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCHHHHH
Confidence 999999874447899999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHH
Q 008895 136 RQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215 (549)
Q Consensus 136 ~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~ 215 (549)
+++++++++++|+++...... ...+ .++++................++++++++|||||||.||+|.++|+
T Consensus 88 ~~~~~~~~~~ii~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~ 158 (488)
T PRK09088 88 ALLQDAEPRLLLGDDAVAAGR----TDVE-----DLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSER 158 (488)
T ss_pred HHHHhCCCCEEEEcchhhccc----cccc-----chhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehH
Confidence 999999999999987543211 1111 1111111100000111122345789999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH-HHHHHhhhccEEEEecCcCHHHHHHHHHH--hceeeeeecHHHH
Q 008895 216 NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEE--FRVTHAAVTPPIV 292 (549)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~g~~~~~~~~~~~~~~~~~l~~--~~~t~l~~~P~~l 292 (549)
++........... ....++++++.+|++|.+++. .+..++..|+++++.+.+++..++..+.+ +++|+++.+|.++
T Consensus 159 ~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~ 237 (488)
T PRK09088 159 NLQQTAHNFGVLG-RVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMA 237 (488)
T ss_pred HHHHHHHHHHHhh-CCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHH
Confidence 9987776655544 357789999999999999984 46677888999988888889999988864 7899999999999
Q ss_pred HHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC-cCCCCCCCccccccCCc
Q 008895 293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGL 371 (549)
Q Consensus 293 ~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~~~~~~ 371 (549)
..+.+........++++|.+++||++++.+..+.+.+. ++.+++.||+||++.+...... .......+++|.|.+++
T Consensus 238 ~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~ 315 (488)
T PRK09088 238 QAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTV 315 (488)
T ss_pred HHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCCccccCCCCc
Confidence 99887655445567899999999999999988888765 7899999999999875432211 11123557899999999
Q ss_pred EEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEee
Q 008895 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQV 451 (549)
Q Consensus 372 ~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v 451 (549)
+++|+| +++.+++.|+.|||+|+|++++.||+++++.+...+..+|||+|||+|+++++|.+++.||.+|+|+.+|++|
T Consensus 316 ~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i 394 (488)
T PRK09088 316 QTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENV 394 (488)
T ss_pred EEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEE
Confidence 999999 6788999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcc
Q 008895 452 APAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKI 531 (549)
Q Consensus 452 ~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv 531 (549)
+|.+||++|.++|.|.+++|++.++...++..+++++..++...+.+++.++++++++++++|..|.++++||+|++||+
T Consensus 395 ~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi 474 (488)
T PRK09088 395 YPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKL 474 (488)
T ss_pred CHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCce
Confidence 99999999999999999999999887777888899988766666789999999999999999999999999999999999
Q ss_pred cHHHHHcccCcC
Q 008895 532 LRMELRKVAVPS 543 (549)
Q Consensus 532 ~r~~l~~~~~~~ 543 (549)
+|++|++++.+.
T Consensus 475 ~r~~l~~~~~~~ 486 (488)
T PRK09088 475 QKARLRDALAAG 486 (488)
T ss_pred eHHHHHHHHHhc
Confidence 999999998765
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=553.91 Aligned_cols=494 Identities=34% Similarity=0.520 Sum_probs=433.7
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
+.++.+.|...++.+ |+++|+.+. ++.+||.||+++++++|+.|.+ .|+++|++|+++++|+.+++++++||+
T Consensus 5 ~~~l~~~l~~~~~~~----p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~g~~~~~~V~l~~~~~~~~~~~~la~~ 77 (521)
T PRK06187 5 PLTIGRILRHGARKH----PDKEAVYFD--GRRTTYAELDERVNRLANALRA-LGVKKGDRVAVFDWNSHEYLEAYFAVP 77 (521)
T ss_pred cCCHHHHHHHHHHHC----CCceEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 379999999999999 999999988 6789999999999999999998 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----C-C-eEEEecCC----------chhhhhcccCC
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K-H-RTILIDSP----------EFDSMTMSWNS 180 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~-~-~~~~~~~~----------~~~~~~~~~~~ 180 (549)
++|++++|+++..+.+++..+++.+++++++++......+... . . .++.++.. .+.++......
T Consensus 78 ~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (521)
T PRK06187 78 KIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASD 157 (521)
T ss_pred HcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCc
Confidence 9999999999999999999999999999999998876655432 1 1 23333221 22333222111
Q ss_pred CccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhcc
Q 008895 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (549)
Q Consensus 181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~ 260 (549)
........+++.++++|||||||.||+|.++|+++..........+ +..+++++++.+|++|.+++...+.++..|+
T Consensus 158 --~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~ 234 (521)
T PRK06187 158 --TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-KLSRDDVYLVIVPMFHVHAWGLPYLALMAGA 234 (521)
T ss_pred --cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-CCCCCCEEEEeCCchHHhhHHHHHHHHHhCC
Confidence 1112234567899999999999999999999999998887766655 5788899999999999999977777999999
Q ss_pred EEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEccc
Q 008895 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~y 340 (549)
++++.+.+++..+++.++++++|.++++|+++..+.+........++++|.+++||+++++++++.+.+.+ ++++++.|
T Consensus 235 ~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~Y 313 (521)
T PRK06187 235 KQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGY 313 (521)
T ss_pred EEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-Ccchheee
Confidence 99999888999999999999999999999999999988876667789999999999999999999999998 89999999
Q ss_pred CccccccceecccCcCC----CCCCCccccccCCcEEEEEcCCCCCcCCC--CCcceEEEecCCcccccCCCcccccccc
Q 008895 341 GLTESTAGVFRTVGPDE----CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGYVGEPEVTSATL 414 (549)
Q Consensus 341 G~tE~~~~~~~~~~~~~----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 414 (549)
|+||+|.++........ ....+++|.|++++.++|+| +++.+++. |+.|||+++|+.++.||+++++.+...|
T Consensus 314 G~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~ 392 (521)
T PRK06187 314 GMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI 392 (521)
T ss_pred ccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh
Confidence 99999876655332222 12567899999999999999 55778888 9999999999999999999999888877
Q ss_pred CCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCC
Q 008895 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS 494 (549)
Q Consensus 415 ~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~ 494 (549)
.++||+|||+++++++|.+++.||.+|++|++|.++++.+||++|.++++|.+++|++.++...++.++++++.+++..
T Consensus 393 -~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 471 (521)
T PRK06187 393 -DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGAT 471 (521)
T ss_pred -hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCC
Confidence 4779999999999999999999999999999999999999999999999999999999988777889999999887777
Q ss_pred CCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 495 LNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 495 ~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
.+.++++++++++++++++|..++++++||+|++||++|+.|++++.++
T Consensus 472 ~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~~ 520 (521)
T PRK06187 472 LDAKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEG 520 (521)
T ss_pred CCHHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhcC
Confidence 7889999999999999999999999999999999999999999999876
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-67 Score=552.59 Aligned_cols=486 Identities=22% Similarity=0.273 Sum_probs=405.3
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCC-CCCCEEEEEcCCCChHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~-~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
-++.+.+.+++ . |+++|+++. +..+||.||.++++++|..|.+ .|+ ++|++|+++++|+++++++++||+
T Consensus 3 ~~~~~~l~~~~--~----p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~-~g~~~~~~~V~i~~~n~~~~v~~~lA~~ 73 (540)
T PRK13388 3 DTIAQLLRDRA--G----DDTIAVRYG--DRTWTWREVLAEAAARAAALIA-LADPDRPLHVGVLLGNTPEMLFWLAAAA 73 (540)
T ss_pred hhHHHHHHhhc--c----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCcHHHHHHHHHH
Confidence 36778887654 5 899999987 7899999999999999999998 899 799999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC---CCeEEEecCCchhhhhcccCCCccccccccCCCC
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL---KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD 193 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (549)
++|++++|++|.++.+++..++++++++++|++++....+.+. ....+.++...+.++...... ........+++
T Consensus 74 ~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 151 (540)
T PRK13388 74 LGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPAYAELVAAAGA--LTPHREVDAMD 151 (540)
T ss_pred hCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccchhhhhhhccccC--cCCCCCCCCCC
Confidence 9999999999999999999999999999999998776655443 234444444444433321111 11112346789
Q ss_pred EEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHH-HHHHhhhccEEEEecCcCHHH
Q 008895 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLKM 272 (549)
Q Consensus 194 ~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~-~~~~l~~g~~~~~~~~~~~~~ 272 (549)
+++++|||||||.||+|.++|.++..........+ ....+|+++..+|++|.+++.. .+.++..|+++++.+.+++..
T Consensus 152 ~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~ 230 (540)
T PRK13388 152 PFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-GLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASG 230 (540)
T ss_pred eEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-CCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHH
Confidence 99999999999999999999999988777666666 4678899999999999988854 445788999998888889999
Q ss_pred HHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecc
Q 008895 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (549)
Q Consensus 273 ~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~ 352 (549)
+++.++++++|++..+|..+..++...........+++. . .|++++++....+.+.+ +.++++.||+||++.++...
T Consensus 231 ~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~-~-~G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~ 307 (540)
T PRK13388 231 FLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRV-A-FGNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVRE 307 (540)
T ss_pred HHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEE-E-ECCCCCHHHHHHHHHHh-CCceecccccccccceeecC
Confidence 999999999999999999999888765432222345663 3 36677888889999888 78999999999998766532
Q ss_pred cCcCCCCCCCccccccCCcEEE-----------EEcCCCCCcC-CCCCcceEEEe-cCCcccccCCCccccccccCCCCe
Q 008895 353 VGPDECRRWGSTGRLSAGLEAK-----------IVDPETGDSL-PPGKEGELSIR-GPTIMKGYVGEPEVTSATLLPDGW 419 (549)
Q Consensus 353 ~~~~~~~~~~~~G~~~~~~~~~-----------i~d~~~~~~~-~~g~~Gel~v~-g~~~~~gy~~~~~~~~~~~~~~~~ 419 (549)
. ....+++|+|++|+++. ++| ++++.+ +++..|||+++ |++++.||+++++.+.+.| .+||
T Consensus 308 ~----~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~ 381 (540)
T PRK13388 308 P----GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGM 381 (540)
T ss_pred C----CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCc
Confidence 1 23457899999997653 333 334444 34678999998 9999999999999998888 5799
Q ss_pred eecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 008895 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAE 499 (549)
Q Consensus 420 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~ 499 (549)
|+|||+|+++++|++++.||++|+||++|++|+|.+||++|.++|+|.+|+|++.++...++.+++++++.++...+.++
T Consensus 382 ~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~ 461 (540)
T PRK13388 382 YWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDA 461 (540)
T ss_pred eeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888887776778889
Q ss_pred HHHHHHhc--CCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 500 IMEFVARQ--VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 500 i~~~l~~~--l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+.++++.+ |+++++|..++++++||+|++||++|++|+++..+..
T Consensus 462 l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~~ 508 (540)
T PRK13388 462 FAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWATG 508 (540)
T ss_pred HHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCCC
Confidence 99999864 9999999999999999999999999999999886553
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=658.86 Aligned_cols=487 Identities=21% Similarity=0.303 Sum_probs=427.7
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|..+++++ |+++|++++ ++++||+||+++++++|+.|.+ .|+++|++|+++++|++++++++|||++
T Consensus 3095 ~~~~~l~~~~a~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~vv~~lavl~ 3167 (3956)
T PRK12467 3095 RLVHQLIEAQVART----PEAPALVFG--DQQLSYAELNRRANRLAHRLIA-IGVGPDVLVGVAVERSVEMIVALLAVLK 3167 (3956)
T ss_pred ccHHHHHHHHHHhC----CCcceEeeC--CcccCHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEeCCCHHHHHHHHHHHh
Confidence 58999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-CCeEEEecCCchhhhhcccCCCccccccccCCCCEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
+|++++|++|.++.+++.+++++++++++|++......+... ....+.++...... . ..........++++++
T Consensus 3168 aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~a~ 3241 (3956)
T PRK12467 3168 AGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNG-----Y-SENNPSTRVMGENLAY 3241 (3956)
T ss_pred hCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecchhhcc-----c-CCCCCcccCCCCceEE
Confidence 999999999999999999999999999999998776554322 22333333221110 0 1111223456789999
Q ss_pred EEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC--cCHHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR--FDLKMML 274 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~ 274 (549)
++|||||||.||||+++|+++.+.+......+ ...++++++..+|++|..+.+.++.++..|+++++.+. +++..++
T Consensus 3242 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~ 3320 (3956)
T PRK12467 3242 VIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-ELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELW 3320 (3956)
T ss_pred EEEccCCCCCcceeeehhHHHHHHHHHHHHhc-CCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHH
Confidence 99999999999999999999999998877777 57789999999999999999999999999999998875 7899999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.|.++++|++.++|+++..+++... ...++++|.+++|||++++++.++|.+.++++.+++.||+||++..++....
T Consensus 3321 ~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 3398 (3956)
T PRK12467 3321 QAIHAHRISIACFPPAYLQQFAEDAG--GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKC 3398 (3956)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHhccc--ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEec
Confidence 99999999999999999999987542 3457889999999999999999999999888999999999999877654322
Q ss_pred cCC---CCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCC-------eeecCc
Q 008895 355 PDE---CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG-------WMRTGD 424 (549)
Q Consensus 355 ~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~-------~~~TGD 424 (549)
... .....++|+|++|++++|+| +.+++++.|+.|||+|+|+++++||+++|+.|.++|..++ ||+|||
T Consensus 3399 ~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGD 3477 (3956)
T PRK12467 3399 GGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGD 3477 (3956)
T ss_pred ccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccch
Confidence 111 12336899999999999999 7789999999999999999999999999999999997654 599999
Q ss_pred eEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 008895 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV 504 (549)
Q Consensus 425 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l 504 (549)
+|++++||+++++||+|++||++|++|+|.|||++|.++|+|.+++|++..+ ..++.+++|++.........+++++++
T Consensus 3478 l~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~~~~~l~~~l 3556 (3956)
T PRK12467 3478 LARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGDWRETLRDHL 3556 (3956)
T ss_pred hheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCcccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754 457789999998765556789999999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+++|+.|++|..|+++++||+|++|||||++|++....
T Consensus 3557 ~~~Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467 3557 AASLPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred hccCChhhCCCeeeeeccCCCCCCCccchhhcCCCCcc
Confidence 99999999999999999999999999999999987655
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-68 Score=567.80 Aligned_cols=491 Identities=22% Similarity=0.294 Sum_probs=389.3
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEE-----CCCC--ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALIN-----SVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~-----~~~~--~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v 110 (549)
.|+.++|.+.++++ |+++|+.. ...+ +.+||+||.++++++|++|.+ +|+++||+|+|+++|++++++
T Consensus 43 ~t~~~~l~~~~~~~----p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e~~~ 117 (660)
T PLN02861 43 DSPWQFFSDAVKKY----PNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS-RGVNPGDRCGIYGSNCPEWII 117 (660)
T ss_pred CCHHHHHHHHHHhC----CCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHH
Confidence 58999999999999 99999863 1112 479999999999999999998 999999999999999999999
Q ss_pred HHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC------CCe-EEEecCC--------------
Q 008895 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHR-TILIDSP-------------- 169 (549)
Q Consensus 111 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~-~~~~~~~-------------- 169 (549)
++|||+++|++++|+++.++.+++.+++++++++++|++......+... ..+ ++.++..
T Consensus 118 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 197 (660)
T PLN02861 118 AMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVS 197 (660)
T ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcE
Confidence 9999999999999999999999999999999999999987655443221 122 3333321
Q ss_pred --chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCC----CCCCCcEEEEecCh
Q 008895 170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP----KRVSPAVMLFTMPY 243 (549)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~----~~~~~~~~~~~~pl 243 (549)
.+.++...... ........++++++|+|||||||.||||++||+++++........+. ....+|++++.+|+
T Consensus 198 ~~~~~~~~~~~~~--~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl 275 (660)
T PLN02861 198 CFSWEEFSLMGSL--DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPL 275 (660)
T ss_pred EEEHHHHHHhCcc--cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcH
Confidence 12222211110 11112345789999999999999999999999999988766544331 13578999999999
Q ss_pred hhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCC------------------------
Q 008895 244 FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG------------------------ 299 (549)
Q Consensus 244 ~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~------------------------ 299 (549)
+|.+++...+.++..|+++++. .+++..+++.|++++||+++++|.++..+.+..
T Consensus 276 ~H~~~~~~~~~~l~~G~~v~~~-~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 354 (660)
T PLN02861 276 AHVYDQVIETYCISKGASIGFW-QGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLG 354 (660)
T ss_pred HHHHHHHHHHHHHHhCCEEEEe-CCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999986666788999998877 468899999999999999999999998876410
Q ss_pred -------------CCCCC-------CC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCC
Q 008895 300 -------------STDGY-------DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358 (549)
Q Consensus 300 -------------~~~~~-------~l-~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~ 358 (549)
..... .+ .++|.+++||+++++++.+ |.+.++...+++.||+||+++.++..... ..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~-~~ 432 (660)
T PLN02861 355 NLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIAN-VF 432 (660)
T ss_pred HHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccc-cC
Confidence 00000 01 4789999999999999754 66666455799999999998765543221 22
Q ss_pred CCCCccccccCCcEEEEEcC-CCC-CcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEE
Q 008895 359 RRWGSTGRLSAGLEAKIVDP-ETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFI 436 (549)
Q Consensus 359 ~~~~~~G~~~~~~~~~i~d~-~~~-~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~ 436 (549)
...+++|+|+++++++|+|. +.+ ..++.+..|||+|+|++++.|||++|+.|.+.| .+|||+|||+|++|+||++++
T Consensus 433 ~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i 511 (660)
T PLN02861 433 SMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKI 511 (660)
T ss_pred CCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccCceEEECCCCcEEE
Confidence 34689999999999999983 333 344566789999999999999999999999999 589999999999999999999
Q ss_pred EcccCCeeee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCC--------C--CCCH--------
Q 008895 437 VDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH--------S--SLNE-------- 497 (549)
Q Consensus 437 ~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~--------~--~~~~-------- 497 (549)
.||+||+||+ +|++|+|.+||++|.+||.|.+++|++.+ .++.++++|++... . ..+.
T Consensus 512 ~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~ 588 (660)
T PLN02861 512 IDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLK 588 (660)
T ss_pred EeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHH
Confidence 9999999997 79999999999999999999999999875 24678999987532 0 0111
Q ss_pred --HHHHHHHHh-----cCCCCCcccEEEEe-Ccc-----CCCCCCcccHHHHHcccCc
Q 008895 498 --AEIMEFVAR-----QVSPYKKIRRVAFI-NAI-----PKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 498 --~~i~~~l~~-----~l~~~~~p~~i~~v-~~l-----P~t~~GKv~r~~l~~~~~~ 542 (549)
..+.+.+++ .+..+.+++.+.+. +++ .+|+++|+.|+.+.+.|.+
T Consensus 589 ~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02861 589 ARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKD 646 (660)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHH
Confidence 224444443 48899999988885 467 8999999999999988754
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-67 Score=550.02 Aligned_cols=485 Identities=26% Similarity=0.376 Sum_probs=418.1
Q ss_pred HHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcC
Q 008895 40 AVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119 (549)
Q Consensus 40 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G 119 (549)
+.+.+...++++ |+++|+.+. ++.+||+||.+++.++|++|++ .|+.+|++|+++++|+.++++++|||+++|
T Consensus 2 ~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 74 (515)
T TIGR03098 2 LHHLLEDAAARL----PDATALVHH--DRTLTYAALSERVLALASGLRG-LGLARGERVAIYLDKRLETVTAMFGAALAG 74 (515)
T ss_pred HHHHHHHHHHHC----CCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 677888888888 999999987 7899999999999999999998 899999999999999999999999999999
Q ss_pred CeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----C-CeEEEecCC-----------chhhhhcccCCCc
Q 008895 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----K-HRTILIDSP-----------EFDSMTMSWNSKH 182 (549)
Q Consensus 120 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~-~~~~~~~~~-----------~~~~~~~~~~~~~ 182 (549)
++++|+++..+.+++..+++.+++++++++......+... . ...+.++.. .|+.+.....
T Consensus 75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 151 (515)
T TIGR03098 75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGD--- 151 (515)
T ss_pred EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccc---
Confidence 9999999999999999999999999999987765543321 1 123333321 2222221111
Q ss_pred cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEE
Q 008895 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETA 262 (549)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~ 262 (549)
.........++.++++|||||||.||+|.++|+++..+.......+ ....++++++.+|++|.+++...+.++..|+++
T Consensus 152 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~ 230 (515)
T TIGR03098 152 ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-ENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATV 230 (515)
T ss_pred ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-CCCcccEEEEECchhhHhHHHHHHHHHHcCCEE
Confidence 1111223457899999999999999999999999998887766665 467789999999999999998889999999999
Q ss_pred EEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCc
Q 008895 263 VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (549)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~ 342 (549)
++.+.+++..+++.++++++|++.++|+++..+.+... ....++++|.+++||+++++++.+.+++.+++..+++.||+
T Consensus 231 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~ 309 (515)
T TIGR03098 231 VLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGL 309 (515)
T ss_pred EEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeecc
Confidence 99988999999999999999999999999999886532 22457899999999999999999999999988899999999
Q ss_pred cccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC------
Q 008895 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------ 416 (549)
Q Consensus 343 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------ 416 (549)
||++...... ........+++|+|++++.++|+| ++++.++.|+.|||+++|+.++.||+++++.+...|.+
T Consensus 310 tE~~~~~~~~-~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~ 387 (515)
T TIGR03098 310 TEAFRSTYLP-PEEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPG 387 (515)
T ss_pred ccccceEecc-cccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccc
Confidence 9987654332 222234567999999999999999 67889999999999999999999999999887766543
Q ss_pred -----CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCC
Q 008895 417 -----DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP 491 (549)
Q Consensus 417 -----~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~ 491 (549)
++||+|||+|+++++|++++.||.+|+|+++|.+|+|.+||++|.++|.|.+++|++.+++..++.++++++...
T Consensus 388 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~ 467 (515)
T TIGR03098 388 ELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPG 467 (515)
T ss_pred cccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCC
Confidence 248999999999999999999999999999999999999999999999999999999999888899999988766
Q ss_pred CCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHc
Q 008895 492 HSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538 (549)
Q Consensus 492 ~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~ 538 (549)
....+.+++.++++++|+++++|..++++++||+|++||++|++|++
T Consensus 468 ~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 468 GEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred CCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 66678899999999999999999999999999999999999999975
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-67 Score=553.90 Aligned_cols=494 Identities=28% Similarity=0.460 Sum_probs=419.3
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+++.++++++ |+++|+++. +++++||+||+++++++|++|++ .|+++||+|+++++|+++++++++||++
T Consensus 23 ~~l~~~~~~~~~~~----pd~~a~~~~-~~~~~Ty~~l~~~v~~la~~l~~-~G~~~gd~V~i~~~n~~~~~~~~lA~~~ 96 (547)
T PRK06087 23 ASLADYWQQTARAM----PDKIAVVDN-HGASYTYSALDHAASRLANWLLA-KGIEPGDRVAFQLPGWCEFTIIYLACLK 96 (547)
T ss_pred CCHHHHHHHHHHHC----CCceEEEcC-CCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 57999999999999 999999875 35799999999999999999998 9999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCcc-----HHHHh----cC-CC-eEEEecCC-------chhhhhcccC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV-----VHKLA----KL-KH-RTILIDSP-------EFDSMTMSWN 179 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~----~~-~~-~~~~~~~~-------~~~~~~~~~~ 179 (549)
+|++++|++|..+.+++..+++.+++++++++... .+.+. .. .. .++.++.. .+.++.....
T Consensus 97 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (547)
T PRK06087 97 VGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYE 176 (547)
T ss_pred cCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCC
Confidence 99999999999999999999999999999997532 11111 11 11 23333221 1112111111
Q ss_pred CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhh
Q 008895 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAAL 258 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~ 258 (549)
. .........+++++++|||||||.||+|.++|.++........... ...++++++..+|++|.+|+ ...+.++..
T Consensus 177 ~--~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~ 253 (547)
T PRK06087 177 P--LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NLTWQDVFMMPAPLGHATGFLHGVTAPFLI 253 (547)
T ss_pred c--ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeEEEecchHHHHHHHHHHHHHHhc
Confidence 0 0111234568899999999999999999999999988777665555 46788999999999999988 556788889
Q ss_pred ccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEc
Q 008895 259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (549)
Q Consensus 259 g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~ 338 (549)
|+++++.+.+++..+++.|+++++++++.+|+.+..++.........++++|.+++||+++++++.+.+.+. ++++++
T Consensus 254 g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~ 331 (547)
T PRK06087 254 GARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLLS 331 (547)
T ss_pred CCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEE
Confidence 999999999999999999999999999998888877777665555678899999999999999999988775 889999
Q ss_pred ccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 008895 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (549)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~ 418 (549)
.||+||++.+.+...........+++|+|++++.++++| +++.+++.|+.|||+++|+.++.||+++++.+...+..++
T Consensus 332 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g 410 (547)
T PRK06087 332 VYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEG 410 (547)
T ss_pred EecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCC
Confidence 999999987765432222222346789999999999999 7788999999999999999999999999999988887889
Q ss_pred eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCC-CCCCCH
Q 008895 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP-HSSLNE 497 (549)
Q Consensus 419 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~-~~~~~~ 497 (549)
||+|||+++++++|++++.||.+|+|+.+|++|+|.+||++|..+|+|.+++|++.+++..++.++++++..+ ....+.
T Consensus 411 ~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~ 490 (547)
T PRK06087 411 WYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTL 490 (547)
T ss_pred CcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999998888899999998765 345677
Q ss_pred HHHHHHHH-hcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 498 AEIMEFVA-RQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 498 ~~i~~~l~-~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
+++.+++. +.++++++|..|.++++||+|.+||++|++|++++.+.
T Consensus 491 ~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~ 537 (547)
T PRK06087 491 EEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRR 537 (547)
T ss_pred HHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHH
Confidence 88999885 57999999999999999999999999999999888654
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=561.64 Aligned_cols=512 Identities=19% Similarity=0.215 Sum_probs=402.0
Q ss_pred CCceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCC---ceecHHHHHHHHHHHHHHhHHh--cCC
Q 008895 18 ATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG---LRVSFSEFTRRTNSLASYLQNV--TRL 92 (549)
Q Consensus 18 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~---~~~Ty~el~~~a~~~A~~L~~~--~g~ 92 (549)
...+|+........+. ...-++.++|.+.++++ |+++|+++...+ +.+||+||.++++++|++|.+. +|+
T Consensus 42 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~----p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv 116 (746)
T PTZ00342 42 ESSVYCMKDHKKKSSL-YVYKHIMKLLLEKYKLN----NNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGI 116 (746)
T ss_pred CCCceecCchhhcccc-cccchHHHHHHHHHhhc----CCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3457766665444332 22469999999999999 999999864223 6899999999999999999972 499
Q ss_pred CCC-----------CEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC--
Q 008895 93 SKN-----------DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-- 159 (549)
Q Consensus 93 ~~g-----------~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-- 159 (549)
++| |+|+|+++|+++|+++++||+++|++.||+++.++.+++.++|+++++++++++.+..+.+.+.
T Consensus 117 ~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~ 196 (746)
T PTZ00342 117 PEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKN 196 (746)
T ss_pred CcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhc
Confidence 999 9999999999999999999999999999999999999999999999999999987766655421
Q ss_pred ---CC-eEEEecCCchh--------------------------------------------------------hhhcccC
Q 008895 160 ---KH-RTILIDSPEFD--------------------------------------------------------SMTMSWN 179 (549)
Q Consensus 160 ---~~-~~~~~~~~~~~--------------------------------------------------------~~~~~~~ 179 (549)
.. .++.++..... ++.....
T Consensus 197 ~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 276 (746)
T PTZ00342 197 ELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAK 276 (746)
T ss_pred cCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhh
Confidence 11 24444321100 0000000
Q ss_pred ---------------CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCC-CCCCCcEEEEecCh
Q 008895 180 ---------------SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-KRVSPAVMLFTMPY 243 (549)
Q Consensus 180 ---------------~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~pl 243 (549)
...........++++++|+|||||||.||||++||+++++.+........ .....++.++.+|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL 356 (746)
T PTZ00342 277 KLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPI 356 (746)
T ss_pred cCCCEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcH
Confidence 00000112346789999999999999999999999999988766543221 12345899999999
Q ss_pred hhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhC--------CCCCC------------
Q 008895 244 FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG--------GSTDG------------ 303 (549)
Q Consensus 244 ~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~--------~~~~~------------ 303 (549)
+|++++...+.++..|+++++... ++..+++.|.+++||+++++|.++..+.+. .....
T Consensus 357 ~Hi~~~~~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 435 (746)
T PTZ00342 357 SHIYERVIAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKS 435 (746)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 999999777888999999988765 889999999999999999999999888652 10000
Q ss_pred ----------------------CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCC
Q 008895 304 ----------------------YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361 (549)
Q Consensus 304 ----------------------~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~ 361 (549)
.-.+++|.+++||+++++++.++|+..+ ++.+.+.||+||+++.++... ......
T Consensus 436 ~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~--~~~~~~ 512 (746)
T PTZ00342 436 NNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQH--ADDNNT 512 (746)
T ss_pred hhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeecc--CCCCCc
Confidence 0026899999999999999999999988 789999999999977655432 223466
Q ss_pred Ccccccc-CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEccc
Q 008895 362 GSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL 440 (549)
Q Consensus 362 ~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~ 440 (549)
+++|+|+ |+++++|+|.++......+..|||+++||+++.|||++|+.|.+.|+.+|||+|||+|++|++|+++++||+
T Consensus 513 gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~ 592 (746)
T PTZ00342 513 ESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRS 592 (746)
T ss_pred ccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccC
Confidence 8999998 999999998655444455567999999999999999999999999988999999999999999999999999
Q ss_pred CCeeee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCC--------------CCC---CH-----
Q 008895 441 KDLIKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH--------------SSL---NE----- 497 (549)
Q Consensus 441 ~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~--------------~~~---~~----- 497 (549)
||+||+ +|++|+|.+||++|.+||.|.+|+|++.. ....++|+|++... ... +.
T Consensus 593 kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~---~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~ 669 (746)
T PTZ00342 593 KGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD---SMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLT 669 (746)
T ss_pred CCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC---CccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhh
Confidence 999997 79999999999999999999999999753 23467888886531 000 10
Q ss_pred ------HH----HHHHH-----HhcCCCCCcccEEEEeC-cc----CCCCCCcccHHHHHcccC
Q 008895 498 ------AE----IMEFV-----ARQVSPYKKIRRVAFIN-AI----PKSAAGKILRMELRKVAV 541 (549)
Q Consensus 498 ------~~----i~~~l-----~~~l~~~~~p~~i~~v~-~l----P~t~~GKv~r~~l~~~~~ 541 (549)
.+ +.+.+ +..|..+.+++.|.++. ++ -+||+.|+.|+.+.+.|.
T Consensus 670 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~ 733 (746)
T PTZ00342 670 DETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYA 733 (746)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHH
Confidence 11 12222 22599999999888873 33 279999999999998765
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=551.85 Aligned_cols=492 Identities=31% Similarity=0.481 Sum_probs=409.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.+.++++ |+++|+++. ++++||.||.++++++|++|.+..|+++||+|+++++|++++++++|||++
T Consensus 24 ~~~~~~l~~~~~~~----p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~ 97 (562)
T PRK12492 24 KSVVEVFERSCKKF----ADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALR 97 (562)
T ss_pred CcHHHHHHHHHHhC----CCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 58999999999888 999999876 789999999999999999999734999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCe-EEEec-------------------------
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILID------------------------- 167 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~-~~~~~------------------------- 167 (549)
+|++++|+++..+.+++.+++++++++++++++...+..... ... .+...
T Consensus 98 ~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (562)
T PRK12492 98 AGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVP 177 (562)
T ss_pred cCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhccccccccccccc
Confidence 999999999999999999999999999999976543332211 000 00000
Q ss_pred ------CCchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCC--------CC-
Q 008895 168 ------SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK--------RV- 232 (549)
Q Consensus 168 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--------~~- 232 (549)
...|+......... .........+++++++|||||||.||+|+++|+++..+.......+.. ..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 256 (562)
T PRK12492 178 AYHLPQAVPFKQALRQGRGL-SLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKE 256 (562)
T ss_pred ccCCcccccHHHHHhccCCC-CCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccC
Confidence 00011111100000 011123456789999999999999999999999997766554332210 11
Q ss_pred CCcEEEEecChhhHHHH-HHHHHHhhhccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCce
Q 008895 233 SPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310 (549)
Q Consensus 233 ~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr 310 (549)
..++++..+|++|.+++ ...+..+..|...+... ++++..+++.++++++|+++++|+++..++........+++++|
T Consensus 257 ~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr 336 (562)
T PRK12492 257 GQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALK 336 (562)
T ss_pred CCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCccccccccee
Confidence 23577889999999998 44556667777766654 56889999999999999999999999999887665556788999
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcc
Q 008895 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG 390 (549)
Q Consensus 311 ~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 390 (549)
.+++||+++++++.+++.+.+ ++++++.||+||++.++..... ......+++|+|++++.++|+| +++.+++.|+.|
T Consensus 337 ~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~G 413 (562)
T PRK12492 337 LTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPY-GELARLGTVGIPVPGTALKVID-DDGNELPLGERG 413 (562)
T ss_pred EEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCC-cccccCCccceecCCCEEEEEC-CCCCCCCCCCce
Confidence 999999999999999999987 7899999999999876654322 2223457899999999999999 578899999999
Q ss_pred eEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEE
Q 008895 391 ELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470 (549)
Q Consensus 391 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~ 470 (549)
||+|+|+.++.||+++++.+...|..++||+|||+|+++++|.+++.||.||+++++|++|+|.+||++|.++|.|.+++
T Consensus 414 el~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~ 493 (562)
T PRK12492 414 ELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCA 493 (562)
T ss_pred EEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEE
Confidence 99999999999999999999988877899999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 471 VIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 471 vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
|++.++...++.++++++..+. ..+.+++.++++++|+.+++|..+.++++||+|++||++|++|++++
T Consensus 494 v~~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~~ 562 (562)
T PRK12492 494 AIGVPDERSGEAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA 562 (562)
T ss_pred EEeccCCCCCceEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCCCceeHHHHHhhC
Confidence 9999888778888888886543 35778999999999999999999999999999999999999999864
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=551.04 Aligned_cols=508 Identities=26% Similarity=0.424 Sum_probs=419.2
Q ss_pred ceeccCCCC-CCCC-CCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCE
Q 008895 20 KTFHSLRPP-IDLP-PEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDT 97 (549)
Q Consensus 20 ~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~ 97 (549)
++|...+++ .+.. ....+.++.+.|...++++ |+++|+++. +..+||.||.++++++|.+|.+ .|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~a~~~----p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~-~gi~~gd~ 75 (557)
T PRK07059 3 KIWLKSYPPGVPAEIDASQYPSLADLLEESFRQY----ADRPAFICM--GKAITYGELDELSRALAAWLQS-RGLAKGAR 75 (557)
T ss_pred CCccccCCCCCCCccCCCCCCCHHHHHHHHHHHc----CCCceEEEc--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCE
Confidence 456666555 2211 1123358999999999999 999999987 7899999999999999999999 89999999
Q ss_pred EEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCe-EEEecC----
Q 008895 98 AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDS---- 168 (549)
Q Consensus 98 V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~-~~~~~~---- 168 (549)
|+++++|++++++++|||+++|++++|++|..+.+++.++++.++++++++++.....+... ... ++....
T Consensus 76 V~i~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (557)
T PRK07059 76 VAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLL 155 (557)
T ss_pred EEEECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccc
Confidence 99999999999999999999999999999999999999999999999999988765544321 111 111100
Q ss_pred --------------------------CchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHH
Q 008895 169 --------------------------PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA 222 (549)
Q Consensus 169 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~ 222 (549)
..+.+...... ..........++++++++|||||||.||+|+++|.+++.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~ 234 (557)
T PRK07059 156 GFKGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGA-RQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVL 234 (557)
T ss_pred cccccccccccccccccccccCCCCcccHHHHhhccC-CCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHH
Confidence 00111111100 001112334678999999999999999999999999987654
Q ss_pred HhhccCC------CCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHH
Q 008895 223 SSFASSP------KRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVA 294 (549)
Q Consensus 223 ~~~~~~~------~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~ 294 (549)
....... .......+++.+|++|.+++ ...+.++..|++.++.+ ..++..+++.++++++|++.++|.++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ 314 (557)
T PRK07059 235 QMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNA 314 (557)
T ss_pred HHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHH
Confidence 3322210 01123567788999999887 45567777787766665 4688999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEE
Q 008895 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374 (549)
Q Consensus 295 l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 374 (549)
+..........++++|.++.||+++++.+.++|.+.+ ++++++.||+||++.++...... .....+++|.|+++++++
T Consensus 315 l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~ 392 (557)
T PRK07059 315 LLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVS 392 (557)
T ss_pred HHcCcCcCcCCchhheEEEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEE
Confidence 9887665556688999999999999999999999988 78999999999998876553322 223457899999999999
Q ss_pred EEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChH
Q 008895 375 IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPA 454 (549)
Q Consensus 375 i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~ 454 (549)
|+| +++++++.|+.|||+++|+.++.||+++++.+...|..+|||+|||+|+++++|.+++.||++|+++++|++|+|.
T Consensus 393 i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~ 471 (557)
T PRK07059 393 IRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPN 471 (557)
T ss_pred EEC-CCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHH
Confidence 999 6789999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHH
Q 008895 455 ELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRM 534 (549)
Q Consensus 455 ~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~ 534 (549)
+||++|.++++|.+++|++.++...++.++++++..+ ...+.++++++++++|+.+++|..+.+++++|+|++||++|+
T Consensus 472 ~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~ 550 (557)
T PRK07059 472 EIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-PALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRR 550 (557)
T ss_pred HHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-CCCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcccceeHH
Confidence 9999999999999999999988888888999888654 346778999999999999999999999999999999999999
Q ss_pred HHHcc
Q 008895 535 ELRKV 539 (549)
Q Consensus 535 ~l~~~ 539 (549)
.|+++
T Consensus 551 ~L~~~ 555 (557)
T PRK07059 551 ELRDG 555 (557)
T ss_pred HHHhh
Confidence 99875
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=562.43 Aligned_cols=493 Identities=23% Similarity=0.344 Sum_probs=396.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECC-------CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSV-------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v 110 (549)
.|+.+++.++++++ |+++|+++.. ..+.+||+||.++++++|++|.+ . +++||+|+++++|++++++
T Consensus 34 ~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~V~l~~~n~~e~~~ 107 (612)
T PRK12476 34 TTLISLIERNIANV----GDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ-V-AGPGDRVAILAPQGIDYVA 107 (612)
T ss_pred CcHHHHHHHHHHhC----CCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH-h-cCCCCEEEEECCCChhHHH
Confidence 78999999988888 9999998631 12489999999999999999998 5 8999999999999999999
Q ss_pred HHHHHHHcCCeEccC-CCCCC--HHHHHHHHhhcCCeEEEEcCccHHHHhc----CC----CeEEEecCCchhhhhcccC
Q 008895 111 LYFSLLSLGVIISPA-NPVNT--ESEISRQIQLSNPVIAFATSSVVHKLAK----LK----HRTILIDSPEFDSMTMSWN 179 (549)
Q Consensus 111 ~~la~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~ 179 (549)
++|||+++|++++|+ ++.++ .+++.+++++++++++|+++.....+.. .. ..++.++.. . ....
T Consensus 108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~---~~~~ 182 (612)
T PRK12476 108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAI--P---DSAG 182 (612)
T ss_pred HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccc--c---cccc
Confidence 999999999999999 57766 7899999999999999998876554321 11 123333211 0 0000
Q ss_pred CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhc
Q 008895 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g 259 (549)
. ........++++++++|||||||.||||.++|+++.++.......+....++++.++.+|++|.+|+...+.++..|
T Consensus 183 -~-~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~g 260 (612)
T PRK12476 183 -E-SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYG 260 (612)
T ss_pred -c-cccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcC
Confidence 0 11112245689999999999999999999999999877665544442246778999999999999996666665666
Q ss_pred cEEEEecC--c--CHHHHHHHHH--HhceeeeeecHHHHHHHHhCCC----CCCCCCCCceEEEEecCCCCHHHHHHHHH
Q 008895 260 ETAVVMQR--F--DLKMMLKAVE--EFRVTHAAVTPPIVVAMSKGGS----TDGYDLSSLETVACGAAPLGKDTIMAFAS 329 (549)
Q Consensus 260 ~~~~~~~~--~--~~~~~~~~l~--~~~~t~l~~~P~~l~~l~~~~~----~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~ 329 (549)
+..++..+ + ++..+++.+. +++++.++.+|+++..++.... ....+++++| +++||+++++++.+++.+
T Consensus 261 g~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~ 339 (612)
T PRK12476 261 GHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNK 339 (612)
T ss_pred CeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHH
Confidence 66666543 3 8899999995 4899999999998887766421 1244678999 999999999999999999
Q ss_pred hCC-----CCcEEcccCccccccceecccCcC-------------------------CCCCCCccccccCCcEEEEEcCC
Q 008895 330 KFP-----KVVLVQAYGLTESTAGVFRTVGPD-------------------------ECRRWGSTGRLSAGLEAKIVDPE 379 (549)
Q Consensus 330 ~~~-----~~~l~~~yG~tE~~~~~~~~~~~~-------------------------~~~~~~~~G~~~~~~~~~i~d~~ 379 (549)
.|+ ...+++.||+||++..+....... .....+++|+|+++++++|+|++
T Consensus 340 ~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~ 419 (612)
T PRK12476 340 AFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPD 419 (612)
T ss_pred HHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCC
Confidence 872 245899999999876544321110 00122578999999999999966
Q ss_pred CCCcCCCCCcceEEEecCCcccccCCCccccccccCC------------------CCeeecCceEEEecCCeEEEEcccC
Q 008895 380 TGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------------------DGWMRTGDLCYIDEDGFLFIVDRLK 441 (549)
Q Consensus 380 ~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------------------~~~~~TGD~~~~~~~g~~~~~GR~~ 441 (549)
++++++.|+.|||+++|++++.||+++++.|...|.. ++||+|||+|++ .+|++++.||+|
T Consensus 420 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~ 498 (612)
T PRK12476 420 TGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRIA 498 (612)
T ss_pred CCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEeccC
Confidence 6999999999999999999999999999999888741 359999999998 499999999999
Q ss_pred CeeeeCcEeeChHHHHHHHHc-CCCcce--EEEEeecCCCCCceeEEEEEeCCCC-CCCHHHHHHHHHhcCC-CCCc-cc
Q 008895 442 DLIKYKGYQVAPAELEHLLLS-HREVAD--AAVIPYPDEEAGQMPMAFVVRQPHS-SLNEAEIMEFVARQVS-PYKK-IR 515 (549)
Q Consensus 442 d~i~~~G~~v~~~~IE~~l~~-~~~v~~--~~vv~~~~~~~~~~~~~~v~~~~~~-~~~~~~i~~~l~~~l~-~~~~-p~ 515 (549)
|+||++|++|+|.+||++|.+ ||.|.+ +++++++++. ++.++++++..++. ..+.++|.+++++++. .+++ |.
T Consensus 499 d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~ 577 (612)
T PRK12476 499 DLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVA 577 (612)
T ss_pred cEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCcce
Confidence 999999999999999999985 899999 6777777766 78889999887654 3577889999999887 4777 57
Q ss_pred EEEEeC--ccCCCCCCcccHHHHHcccCcCCCC
Q 008895 516 RVAFIN--AIPKSAAGKILRMELRKVAVPSGSS 546 (549)
Q Consensus 516 ~i~~v~--~lP~t~~GKv~r~~l~~~~~~~~~~ 546 (549)
.+.+++ +||+|++|||+|++|++++.+++++
T Consensus 578 ~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~~~~ 610 (612)
T PRK12476 578 DVRLVPAGAIPRTTSGKLARRACRAQYLDGRLG 610 (612)
T ss_pred EEEEECCCCcCcCCchHHHHHHHHHHHHcCCCC
Confidence 888886 6999999999999999999988765
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-67 Score=549.09 Aligned_cols=497 Identities=27% Similarity=0.409 Sum_probs=426.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.+++.+.++++ |+++|+++. ++.+||.||.++++++|..|.+ .|+++|++|+++++|+++++++++||++
T Consensus 12 ~~~~~~~~~~~~~~----~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~~~~V~i~~~~~~~~~~~~la~~~ 84 (524)
T PRK06188 12 ATYGHLLVSALKRY----PDRPALVLG--DTRLTYGQLADRISRYIQAFEA-LGLGTGDAVALLSLNRPEVLMAIGAAQL 84 (524)
T ss_pred ccHHHHHHHHHHHC----CCCeEEEEC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 69999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCc-cHHHHhc----C-C-CeEEEecCC-chhhhhcccCC-Cccccccc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSS-VVHKLAK----L-K-HRTILIDSP-EFDSMTMSWNS-KHELDRAK 188 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~-~~~~~~~----~-~-~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 188 (549)
+|++++|++|..+.+.+..+++.++++.+++++. ....... . . ...+.+... ...++...... ........
T Consensus 85 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (524)
T PRK06188 85 AGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAKFGPAPLVAA 164 (524)
T ss_pred hCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhccCccccccc
Confidence 9999999999999999999999999999999876 3332221 1 1 112222211 11111111100 00111122
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCc
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~ 268 (549)
..++++++++|||||||.||+|.++|.++..........+ ....++++++.+|++|.+++. .+.++..|+++++.+.+
T Consensus 165 ~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~ 242 (524)
T PRK06188 165 ALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-EWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKF 242 (524)
T ss_pred CCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCC
Confidence 3456699999999999999999999999998888777666 467889999999999988874 56778899999999999
Q ss_pred CHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccc
Q 008895 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (549)
Q Consensus 269 ~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 348 (549)
++..+++.++++++|+++++|+++..+++........++++|.+++||++++++..+.+.+.+ +..+++.||+||++..
T Consensus 243 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~ 321 (524)
T PRK06188 243 DPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMV 321 (524)
T ss_pred CHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCc
Confidence 999999999999999999999999999988776666789999999999999999999998888 6779999999999765
Q ss_pred eecccCcC----CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCc
Q 008895 349 VFRTVGPD----ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424 (549)
Q Consensus 349 ~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD 424 (549)
+....... .....+++|+|++++.++|+| +++++++.|+.|||+++|+.++.||+++++.+...+ .+|||+|||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD 399 (524)
T PRK06188 322 ITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGD 399 (524)
T ss_pred eeecCchhccccccccCCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecc
Confidence 55432211 123456899999999999999 558899999999999999999999999999988887 589999999
Q ss_pred eEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 008895 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV 504 (549)
Q Consensus 425 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l 504 (549)
+|+++++|.+++.||.+++++++|++|+|.+||++|.++++|.+++|++.++...++.+++++++.+....+.+++.+++
T Consensus 400 l~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 479 (524)
T PRK06188 400 VAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHV 479 (524)
T ss_pred eEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887778899999998876667789999999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCCC
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 546 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~ 546 (549)
+++++.+++|..|+++++||+|++||++|++|++++.++.+.
T Consensus 480 ~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~~~~ 521 (524)
T PRK06188 480 KERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEGRGR 521 (524)
T ss_pred HHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999777653
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=551.41 Aligned_cols=497 Identities=32% Similarity=0.500 Sum_probs=419.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+++...++++ |+++|+++. ++.+||.||.+++.++|++|.+ .|+++||+|+++++|+.++++++|||++
T Consensus 24 ~~~~~~~~~~a~~~----p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (563)
T PRK06710 24 QPLHKYVEQMASRY----PEKKALHFL--GKDITFSVFHDKVKRFANYLQK-LGVEKGDRVAIMLPNCPQAVIGYYGTLL 96 (563)
T ss_pred ccHHHHHHHHHHHC----CCceEEEec--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 47899999999989 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCeEEEec-CCc----------------------
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILID-SPE---------------------- 170 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~-~~~---------------------- 170 (549)
+|++++|++|.++.+++.++++.++++++++++......... ....+.+. ...
T Consensus 97 ~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (563)
T PRK06710 97 AGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVV 176 (563)
T ss_pred cCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccc
Confidence 999999999999999999999999999999987654433211 01111110 000
Q ss_pred ----------hhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC-CCCCCCcEEEE
Q 008895 171 ----------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLF 239 (549)
Q Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~ 239 (549)
+....... ...........++.++++|||||||.||+|.++|+++..+........ .....++++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~ 254 (563)
T PRK06710 177 KVSESETIHLWNSVEKEV--NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLG 254 (563)
T ss_pred cccccchhhhhhhhhhcc--ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEE
Confidence 00000000 000001112346899999999999999999999999976544333322 22344568899
Q ss_pred ecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCC
Q 008895 240 TMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAP 318 (549)
Q Consensus 240 ~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~ 318 (549)
.+|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..++.........++++|.+++||++
T Consensus 255 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~ 334 (563)
T PRK06710 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAP 334 (563)
T ss_pred eCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCc
Confidence 9999999988 445578889999999888899999999999999999999999999988665555567899999999999
Q ss_pred CCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCC
Q 008895 319 LGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398 (549)
Q Consensus 319 l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~ 398 (549)
+++++.+++.+.+ +..+++.||+||++.++..... ......+++|++.+++.++++|++++.+++.|+.|||+++|+.
T Consensus 335 ~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~ 412 (563)
T PRK06710 335 LPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFL-WEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQ 412 (563)
T ss_pred CCHHHHHHHHHhh-CCCEecccccccCccccccCcc-cccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCc
Confidence 9999999999988 7889999999999876543221 1223456899999999999999888999999999999999999
Q ss_pred cccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCC
Q 008895 399 IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEE 478 (549)
Q Consensus 399 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~ 478 (549)
++.||+++++.+...| .+|||+|||+++++++|.+++.||.||+|+++|.+|+|.+||++|.++|.|.+++|++.++..
T Consensus 413 ~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~ 491 (563)
T PRK06710 413 IMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPY 491 (563)
T ss_pred cchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCC
Confidence 9999999999988777 589999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCCC
Q 008895 479 AGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 546 (549)
Q Consensus 479 ~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~ 546 (549)
.++.++++++..++...+.+++.++++++++.+++|..+.++++||+|++||++|++|++++..++.+
T Consensus 492 ~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~~~ 559 (563)
T PRK06710 492 RGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKNED 559 (563)
T ss_pred cCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcCcc
Confidence 88899999998877667889999999999999999999999999999999999999999999877653
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=608.43 Aligned_cols=485 Identities=19% Similarity=0.268 Sum_probs=416.8
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.++++++ |+++|+++. ++.+||+||.++++++|+.|.+ .|+++|++|+++++++.+++++++||++
T Consensus 458 ~~l~~~~~~~~~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~g~~V~l~~~~~~~~i~~~la~~~ 530 (1296)
T PRK10252 458 TTLSALVAQQAAKT----PDAPALADA--RYQFSYREMREQVVALANLLRE-RGVKPGDSVAVALPRSVFLTLALHAIVE 530 (1296)
T ss_pred CCHHHHHHHHHHhC----CCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCC-CeEEEecCCchhhhhcccCCCccccccccCCCCEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
+|++++|++|+++.+++.++++.++++++|++......+.... ......+ ....... ........++++++
T Consensus 531 ~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~a~ 602 (1296)
T PRK10252 531 AGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYN-----APLAPQG---AAPLQLSQPHHTAY 602 (1296)
T ss_pred hCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCCceeeecc-----ccccccc---CCCCCCCCCCCeEE
Confidence 9999999999999999999999999999999987665554321 1111111 1000000 11112235789999
Q ss_pred EEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEec---CcCHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ---RFDLKMM 273 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~---~~~~~~~ 273 (549)
++|||||||.||||+++|+++.+.+.+....+ ...+.++++..+|++|..+++.++.++..|+++++.+ ..++..+
T Consensus 603 i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~ 681 (1296)
T PRK10252 603 IIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-PLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAM 681 (1296)
T ss_pred EEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHH
Confidence 99999999999999999999999988877777 4678899999999999999988999999999999976 3688999
Q ss_pred HHHHHHhceeeeeecHHHHHHHHhCCCCCC--CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceec
Q 008895 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFR 351 (549)
Q Consensus 274 ~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~--~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~ 351 (549)
++.|+++++|++.++|+++..+++...... ..++++|.+++|||++++++.+.|.+.+ ++++++.||+||++..+..
T Consensus 682 ~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~ 760 (1296)
T PRK10252 682 QQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSW 760 (1296)
T ss_pred HHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeee
Confidence 999999999999999999998887643322 3468999999999999999999999887 7899999999999876654
Q ss_pred ccCcCC-----CCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCC------Cee
Q 008895 352 TVGPDE-----CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD------GWM 420 (549)
Q Consensus 352 ~~~~~~-----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~------~~~ 420 (549)
...... .....++|+|++++.++|+| +.+++++.|+.|||+|+|++++.||+++++.|...|..+ +||
T Consensus 761 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y 839 (1296)
T PRK10252 761 YPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMY 839 (1296)
T ss_pred eecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEE
Confidence 322211 22346799999999999999 789999999999999999999999999999999988654 399
Q ss_pred ecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeec----C--CCCCceeEEEEEeCCCCC
Q 008895 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP----D--EEAGQMPMAFVVRQPHSS 494 (549)
Q Consensus 421 ~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~----~--~~~~~~~~~~v~~~~~~~ 494 (549)
+|||+|+++++|.++++||+|++||++|++|++.|||++|.++|+|.+++|+... + ......++++++...+..
T Consensus 840 ~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~ 919 (1296)
T PRK10252 840 RTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLP 919 (1296)
T ss_pred ecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCC
Confidence 9999999999999999999999999999999999999999999999999877552 1 112247899999876656
Q ss_pred CCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 495 LNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 495 ~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
.+.++++++++++|+.|++|..++.+++||+|++|||||++|++..
T Consensus 920 ~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~~ 965 (1296)
T PRK10252 920 LDTSALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLPE 965 (1296)
T ss_pred CCHHHHHHHHHhhCchhcCCcEEEEecCCCCCCCcChhHHhcCCCc
Confidence 6789999999999999999999999999999999999999998754
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-68 Score=555.10 Aligned_cols=484 Identities=20% Similarity=0.285 Sum_probs=382.8
Q ss_pred HHHHHhhcccCCCCCCCCCcEEEECCCC--ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 40 AVDYVSSLRATLPWRDDDTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 40 ~~~~~~~~~~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+.+.+.+.++++ |+++|+++...+ +++||+||.++++++|++|.+ . ++|++|+++++|++++++++|||++
T Consensus 4 ~~~~l~~~~~~~----~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~-~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 4 LAAALSDAMTAS----GRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLD-R--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred HHHHHHHHhcCC----CCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHh-c--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 778888999999 999999987322 789999999999999999998 5 8999999999999999999999999
Q ss_pred cCCeEccCCC-------CCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccC
Q 008895 118 LGVIISPANP-------VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190 (549)
Q Consensus 118 ~G~~~v~l~~-------~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (549)
+|+++++++. ....+++.+++++++++++|++......+...... +.+. .+........ ........
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~---~~~~~~~~ 150 (525)
T PRK05851 77 AGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-VTVH--DLATAAHTNR---SASLTPPD 150 (525)
T ss_pred cCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-cccc--cccccccccc---cccCCCCC
Confidence 9998654321 12234566778999999999987765544322111 1111 1111000000 00111245
Q ss_pred CCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCC-CCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC--
Q 008895 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV-SPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-- 267 (549)
Q Consensus 191 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~-- 267 (549)
++++++++|||||||.||+|+++|+++.+.+......+ ... .+|+++..+|++|.+++...+.++..|+++++.+.
T Consensus 151 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~ 229 (525)
T PRK05851 151 SGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-GLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTA 229 (525)
T ss_pred CCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHH
Confidence 68999999999999999999999999998888776666 345 78999999999999999888899999999998763
Q ss_pred c--CHHHHHHHHHHhceeeeeecHHHHHHHHhCCC-CCCCCCCCceEEEEecCCCCHHHHHHHHHh---C--CCCcEEcc
Q 008895 268 F--DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS-TDGYDLSSLETVACGAAPLGKDTIMAFASK---F--PKVVLVQA 339 (549)
Q Consensus 268 ~--~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~-~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~---~--~~~~l~~~ 339 (549)
+ ++..+++.+.++++|++..+|.++..+.+... .....++++|.+++||+++++++.++|.+. + +...+++.
T Consensus 230 ~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 309 (525)
T PRK05851 230 FSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPS 309 (525)
T ss_pred HHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccc
Confidence 3 57889999999999987555544444433221 234457899999999999999999998875 2 22458999
Q ss_pred cCccccccceecccCcC-------------CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCC
Q 008895 340 YGLTESTAGVFRTVGPD-------------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGE 406 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~-------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~ 406 (549)
||+||++..+....... .....+++|+|++|++++|+|++.+.+++.|+.|||+|+|++++.||+++
T Consensus 310 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~ 389 (525)
T PRK05851 310 YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQ 389 (525)
T ss_pred cchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccC
Confidence 99999976554321110 01234679999999999999966666789999999999999999999998
Q ss_pred ccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEE
Q 008895 407 PEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAF 486 (549)
Q Consensus 407 ~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~ 486 (549)
++.+ .++||+|||+|+++ +|.++++||+||+||++|++|+|.+||++|.+||+|.+++|++++++..++.+.++
T Consensus 390 ~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~ 463 (525)
T PRK05851 390 APID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLV 463 (525)
T ss_pred CccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEE
Confidence 8643 47899999999996 89999999999999999999999999999999999999999999988777777777
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCC--CcccEEEEeC--ccCCCCCCcccHHHHHcccCcCC
Q 008895 487 VVRQPHSSLNEAEIMEFVARQVSPY--KKIRRVAFIN--AIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 487 v~~~~~~~~~~~~i~~~l~~~l~~~--~~p~~i~~v~--~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
++... ...+.+++.++++++|+.+ +.|+.+++++ +||+|++|||+|++|+++++++.
T Consensus 464 v~~~~-~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~~~ 524 (525)
T PRK05851 464 IAAEF-RGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEAAD 524 (525)
T ss_pred EEEEe-cCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHhcC
Confidence 66442 2235567777777777776 8999999998 89999999999999999987754
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=546.16 Aligned_cols=489 Identities=27% Similarity=0.402 Sum_probs=413.7
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECC---CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~---~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la 114 (549)
.++.+++.+.++++ |+++|++... ..+.+||.||.++++++|+.|.+ .|+++||+|+++++|+.+++++++|
T Consensus 7 ~~l~~~~~~~a~~~----p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~-~g~~~~~~v~i~~~n~~~~~~~~la 81 (517)
T PRK08008 7 QHLRQMWDDLADVY----GHKTALIFESSGGVVRRYSYLELNEEINRTANLFYS-LGIRKGDKVALHLDNCPEFIFCWFG 81 (517)
T ss_pred ccHHHHHHHHHHHC----CCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 58999999999999 9999998642 13689999999999999999998 9999999999999999999999999
Q ss_pred HHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC------CC-eEEEecC--------CchhhhhcccC
Q 008895 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KH-RTILIDS--------PEFDSMTMSWN 179 (549)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~-~~~~~~~--------~~~~~~~~~~~ 179 (549)
|+++|+++++++|..+.+++.++++++++++++++.+....+.+. .. .++..+. ..+.+......
T Consensus 82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (517)
T PRK08008 82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQP 161 (517)
T ss_pred HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCC
Confidence 999999999999999999999999999999999998765544321 11 1222221 11222211111
Q ss_pred CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhh
Q 008895 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAAL 258 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~ 258 (549)
.. ........++++++++|||||||.||+|.++|.++........... ....++++++.+|++|..+. ..++.++..
T Consensus 162 ~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~ 239 (517)
T PRK08008 162 AT-LCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-ALRDDDVYLTVMPAFHIDCQCTAAMAAFSA 239 (517)
T ss_pred cc-ccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-CCCCCCeEEEecCcHHHHHHHHHHHHHHhc
Confidence 00 1111233568899999999999999999999999986543322222 35678899999999998766 567788889
Q ss_pred ccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEc
Q 008895 259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (549)
Q Consensus 259 g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~ 338 (549)
|+++++.+.+++..+++.++++++|++.++|++++.++............++.++++ .+++++....+.+.+ ++++++
T Consensus 240 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 317 (517)
T PRK08008 240 GATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFY-LNLSDQEKDAFEERF-GVRLLT 317 (517)
T ss_pred CcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEe-cCCCHHHHHHHHHHh-CCeEEe
Confidence 999999998999999999999999999999999999887654444445678887775 478999999999988 789999
Q ss_pred ccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEec---CCcccccCCCccccccccC
Q 008895 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG---PTIMKGYVGEPEVTSATLL 415 (549)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g---~~~~~gy~~~~~~~~~~~~ 415 (549)
.||+||++..+.... .......+++|.|+++++++|+| +++++++.|+.|||+++| ++++.||+++++.+.+.|.
T Consensus 318 ~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~ 395 (517)
T PRK08008 318 SYGMTETIVGIIGDR-PGDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLE 395 (517)
T ss_pred eccccccccccccCC-ccccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhccc
Confidence 999999986555432 22334567899999999999999 678999999999999998 6899999999999999998
Q ss_pred CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC
Q 008895 416 PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL 495 (549)
Q Consensus 416 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~ 495 (549)
.+|||+|||+|+++++|.+++.||.+|+||.+|++|+|.+||++|.+++.|.+++|++.++...++.+.+++++.++...
T Consensus 396 ~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~ 475 (517)
T PRK08008 396 ADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETL 475 (517)
T ss_pred CCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999988888899999999887777
Q ss_pred CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHH
Q 008895 496 NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537 (549)
Q Consensus 496 ~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~ 537 (549)
+.++++++++++++++++|..++++++||+|++||++|+.|+
T Consensus 476 ~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 476 SEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred CHHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 889999999999999999999999999999999999999875
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=611.18 Aligned_cols=494 Identities=17% Similarity=0.227 Sum_probs=408.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEEC-------CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINS-------VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~-------~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v 110 (549)
.++.++|.++++++ |+++|+++. ..++++||+||.++++++|++|++ .|+++|++|+++++|++++++
T Consensus 236 ~~l~~~~~~~a~~~----pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~~~~~i~ 310 (1389)
T TIGR03443 236 GAIHDIFADNAEKH----PDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLK-TGIKRGDVVMIYAYRGVDLVV 310 (1389)
T ss_pred CcHHHHHHHHHHhC----CCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEecCCHHHHH
Confidence 47999999999999 999999852 125789999999999999999998 899999999999999999999
Q ss_pred HHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCcc---HHHHhc-----C----CCeEEEecCC-ch------
Q 008895 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---VHKLAK-----L----KHRTILIDSP-EF------ 171 (549)
Q Consensus 111 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---~~~~~~-----~----~~~~~~~~~~-~~------ 171 (549)
++|||+++|++++|++|.++.+++.++++.+++++++++... ...+.. . ....+.+... ..
T Consensus 311 ~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1389)
T TIGR03443 311 AVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLE 390 (1389)
T ss_pred HHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccccccc
Confidence 999999999999999999999999999999999999987542 111110 0 0111111110 00
Q ss_pred ---hhhhcccCC-CccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHH
Q 008895 172 ---DSMTMSWNS-KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247 (549)
Q Consensus 172 ---~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 247 (549)
.+....... ..........++++++++|||||||.||||+++|+++.+.+.+....+ ...++++++..+|++|..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~d~ 469 (1389)
T TIGR03443 391 GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-GLSENDKFTMLSGIAHDP 469 (1389)
T ss_pred cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEecCceecc
Confidence 000000000 000111124578899999999999999999999999999888777666 467789999999999998
Q ss_pred HHHHHHHHhhhccEEEEecC---cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHH
Q 008895 248 GLFFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324 (549)
Q Consensus 248 g~~~~~~~l~~g~~~~~~~~---~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~ 324 (549)
++..++.++..|+++++.+. .++..+++.|+++++|+++++|+++..+.... ...++++|.+++|||++++...
T Consensus 470 ~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~ 546 (1389)
T TIGR03443 470 IQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDILTKRDC 546 (1389)
T ss_pred hHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccCCHHHH
Confidence 88889999999999998764 36789999999999999999999999887543 2347899999999999999999
Q ss_pred HHHHHhCCCCcEEcccCccccccceecccCcCC---------CCCCCccccccCCcEEEEEcCCC-CCcCCCCCcceEEE
Q 008895 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPET-GDSLPPGKEGELSI 394 (549)
Q Consensus 325 ~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~g~~Gel~v 394 (549)
+++.+.++++++++.||+||++..+........ .....++|+|+++++++|+|+++ +++++.|+.|||+|
T Consensus 547 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i 626 (1389)
T TIGR03443 547 LRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYV 626 (1389)
T ss_pred HHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEe
Confidence 999998888999999999999876554321111 11235789999999999999543 57899999999999
Q ss_pred ecCCcccccCCCccccccccCC----------------------------CCeeecCceEEEecCCeEEEEcccCCeeee
Q 008895 395 RGPTIMKGYVGEPEVTSATLLP----------------------------DGWMRTGDLCYIDEDGFLFIVDRLKDLIKY 446 (549)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~----------------------------~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~ 446 (549)
+|++++.||+++|+.|.++|.. ++||+|||+|++++||.+++.||+||+||+
T Consensus 627 ~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki 706 (1389)
T TIGR03443 627 RAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI 706 (1389)
T ss_pred cccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe
Confidence 9999999999999999988742 579999999999999999999999999999
Q ss_pred CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC-C-------------------------CCHHHH
Q 008895 447 KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS-S-------------------------LNEAEI 500 (549)
Q Consensus 447 ~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~-~-------------------------~~~~~i 500 (549)
+|++|+|.|||.+|.+||.|.+++|++.++...++.+++|+++.... . ...+++
T Consensus 707 ~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 786 (1389)
T TIGR03443 707 RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDI 786 (1389)
T ss_pred CcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHH
Confidence 99999999999999999999999999988877788999999876221 1 014689
Q ss_pred HHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 501 MEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 501 ~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
+++++++|+.|++|..++++++||+|++|||||++|++.+
T Consensus 787 ~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~ 826 (1389)
T TIGR03443 787 REYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPD 826 (1389)
T ss_pred HHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCc
Confidence 9999999999999999999999999999999999997543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-67 Score=568.52 Aligned_cols=487 Identities=20% Similarity=0.295 Sum_probs=398.6
Q ss_pred CCHHHHHhhcccCCCCCCCC-CcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDD-TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
.|+.+.|.+.++++ |+ ++|+.+. ..+++||+||.++++++|++|.+ . +++||+|+++++|++++++++|||+
T Consensus 204 ~t~~~~l~~~~~~~----p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~Val~~~n~~e~~~~~lA~~ 276 (718)
T PRK08043 204 ETLYEALLSAQYRY----GAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEK-Y-SVEGERIGLMLPNATISAAVIFGAS 276 (718)
T ss_pred CCHHHHHHHHHHHh----CCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHH-h-cCCCceEEEEcCCcHHHHHHHHHHH
Confidence 68899999999999 87 5777653 24789999999999999999998 5 5999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHh--cC-----CCeEEEecCC----chhhh-h-cccCCCcc
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA--KL-----KHRTILIDSP----EFDSM-T-MSWNSKHE 183 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~--~~-----~~~~~~~~~~----~~~~~-~-~~~~~~~~ 183 (549)
++|++++|+++.++.+++.++++++++++++++.+..+... .. ....+.++.. .+... . ........
T Consensus 277 ~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (718)
T PRK08043 277 LRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKLWIFAHLLMPR 356 (718)
T ss_pred HcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999876544211 00 1122222211 00000 0 00000000
Q ss_pred ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEE
Q 008895 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETA 262 (549)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~ 262 (549)
.......++++++++|||||||.||+|+++|+++.+........+ ....+|++++.+|++|.+++ ..++.++..|+++
T Consensus 357 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~v 435 (718)
T PRK08043 357 LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-DFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEV 435 (718)
T ss_pred cccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-CCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEE
Confidence 011234568999999999999999999999999998887766555 56788999999999999998 5577889999999
Q ss_pred EEecC-cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccC
Q 008895 263 VVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341 (549)
Q Consensus 263 ~~~~~-~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG 341 (549)
++.+. ++...+++.+.++++|+++++|+++..+.+.. ...+++++|.+++||+++++++.+.+++.+ ++.+++.||
T Consensus 436 v~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG 512 (718)
T PRK08043 436 FLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYG 512 (718)
T ss_pred EEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccC
Confidence 98764 57788899999999999999999988876642 234578999999999999999999999988 789999999
Q ss_pred ccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCC--Cccc-------ccc
Q 008895 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVG--EPEV-------TSA 412 (549)
Q Consensus 342 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~--~~~~-------~~~ 412 (549)
+||++....... ......+++|+|+||++++++|++ + .++.|||+++|++++.||++ +++. +..
T Consensus 513 ~TE~~~~~~~~~--~~~~~~~svG~p~pg~~~~i~d~~-~----~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~ 585 (718)
T PRK08043 513 VTECAPVVSINV--PMAAKPGTVGRILPGMDARLLSVP-G----IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENAR 585 (718)
T ss_pred cccccceEEecC--CcccCCCCCCCcCCCCeeEEecCC-C----CCCceEEEEecCCccccccCCCCccccccccccccc
Confidence 999987665432 222356899999999999999843 2 24569999999999999998 3442 222
Q ss_pred ccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCC
Q 008895 413 TLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH 492 (549)
Q Consensus 413 ~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~ 492 (549)
.+..+|||+|||+|++|+||++++.||+||+||++|++|+|.+||+++.+++.+.+++|++.++...++.+++++. +
T Consensus 586 ~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~ 662 (718)
T PRK08043 586 GEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---D 662 (718)
T ss_pred ccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---C
Confidence 2335799999999999999999999999999999999999999999999999888999999888888888887764 2
Q ss_pred CCCCHHHHHHHHHhc-CCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 493 SSLNEAEIMEFVARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 493 ~~~~~~~i~~~l~~~-l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
...+.+++.++++++ |+.|++|..++++++||+|++|||+|++|++++.+.++
T Consensus 663 ~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 716 (718)
T PRK08043 663 SELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDEPEQ 716 (718)
T ss_pred cccCHHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhcccc
Confidence 346788999999987 99999999999999999999999999999999877654
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=552.33 Aligned_cols=500 Identities=23% Similarity=0.329 Sum_probs=415.3
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECC-CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSV-TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~-~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
.|+.+++...+..+ |++.|+++.. .++.+||.||.+++.++|++|.+..|+++||+|+++++|+.+++++++||+
T Consensus 10 ~~~~~~l~~~a~~~----~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~ 85 (576)
T PRK05620 10 LSLTRILEYGSTVH----GDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVA 85 (576)
T ss_pred CcHHHHHHHHHHhC----CCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 79999999999989 9999987642 247999999999999999999854699999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCe-EEEecCC----------------chhhh
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDSP----------------EFDSM 174 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~----------------~~~~~ 174 (549)
++|++++|++|..+.+++.++++.++++++|++....+.+.+. ... ++.++.. .|.++
T Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (576)
T PRK05620 86 CMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEAL 165 (576)
T ss_pred hcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHH
Confidence 9999999999999999999999999999999998766654321 111 2233211 12222
Q ss_pred hcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHh--hccCCCCCCCcEEEEecChhhHHHHHHH
Q 008895 175 TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS--FASSPKRVSPAVMLFTMPYFHIYGLFFC 252 (549)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~~~~~~pl~~~~g~~~~ 252 (549)
..... . ........++++++++|||||||.||+|.++|+++....... ...+ .....+++++.+|++|.+++...
T Consensus 166 ~~~~~-~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~~ 242 (576)
T PRK05620 166 LDGRS-T-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-AVTHGESFLCCVPIYHVLSWGVP 242 (576)
T ss_pred hhcCC-C-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-CCCCCCeEEEeCChHHhhhhHHH
Confidence 22111 0 111223456889999999999999999999999986554332 1223 45678999999999999999888
Q ss_pred HHHhhhccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhC
Q 008895 253 FRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331 (549)
Q Consensus 253 ~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~ 331 (549)
+.++..|+++++.. .+++..+++.|+++++|.++++|+++..++...........++|.+++||+++++++.+++.+.+
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~ 322 (576)
T PRK05620 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY 322 (576)
T ss_pred HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh
Confidence 88999999988875 57899999999999999999999999888765433333456899999999999999999999988
Q ss_pred CCCcEEcccCccccccceecccCcCC------CCCCCccccccCCcEEEEEcCCCCCcCC--CCCcceEEEecCCccccc
Q 008895 332 PKVVLVQAYGLTESTAGVFRTVGPDE------CRRWGSTGRLSAGLEAKIVDPETGDSLP--PGKEGELSIRGPTIMKGY 403 (549)
Q Consensus 332 ~~~~l~~~yG~tE~~~~~~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~Gel~v~g~~~~~gy 403 (549)
++++++.||+||++..+........ .....+.|++.++++++++|+ +..++ ++..|||+++|+.++.||
T Consensus 323 -~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~gY 399 (576)
T PRK05620 323 -GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND--GQVMESTDRNEGEIQVRGNWVTASY 399 (576)
T ss_pred -CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC--CccccCCCCCceEEEEEcCcccccc
Confidence 7899999999999876544321110 012247899999999999984 55553 568899999999999999
Q ss_pred CCCcccc----------------ccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcc
Q 008895 404 VGEPEVT----------------SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA 467 (549)
Q Consensus 404 ~~~~~~~----------------~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~ 467 (549)
+++++.+ ...+..+|||+|||+++++++|.+++.||.+|+++.+|.+|++.+||++|.+||.|.
T Consensus 400 ~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~ 479 (576)
T PRK05620 400 YHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVV 479 (576)
T ss_pred cCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCce
Confidence 9999877 233446789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 468 DAAVIPYPDEEAGQMPMAFVVRQPHSS---LNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 468 ~~~vv~~~~~~~~~~~~~~v~~~~~~~---~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+++|++.++...++.++++++..++.. ...++++++++++|+++++|+.|+++++||+|++||++|++|++++.++.
T Consensus 480 ~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~~~ 559 (576)
T PRK05620 480 ECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLADGD 559 (576)
T ss_pred EEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHHhcCC
Confidence 999999999888889999988776543 35689999999999999999999999999999999999999999999888
Q ss_pred CCc
Q 008895 545 SSC 547 (549)
Q Consensus 545 ~~~ 547 (549)
++|
T Consensus 560 ~~~ 562 (576)
T PRK05620 560 FEI 562 (576)
T ss_pred ccE
Confidence 765
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-66 Score=548.21 Aligned_cols=496 Identities=28% Similarity=0.431 Sum_probs=416.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.+...++.+ |+++|+.+. ++.+||.||.+++.++|++|.+ .|+++|++|+++++|+.+++++++||++
T Consensus 33 ~~l~~~l~~~a~~~----p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 105 (567)
T PRK06178 33 RPLTEYLRAWARER----PQRPAIIFY--GHVITYAELDELSDRFAALLRQ-RGVGAGDRVAVFLPNCPQFHIVFFGILK 105 (567)
T ss_pred ccHHHHHHHHHHHC----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCcHHHHHHHHHHH
Confidence 68999999999988 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCeEEE-ecCCc----------------------
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTIL-IDSPE---------------------- 170 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~-~~~~~---------------------- 170 (549)
+|++++|++|..+.+++.++++.++++++++++...+.+.+. ....+. ....+
T Consensus 106 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (567)
T PRK06178 106 LGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAA 185 (567)
T ss_pred hCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccccccccccccccccccccccc
Confidence 999999999999999999999999999999998876655432 111111 11000
Q ss_pred -hhhhhcccCC-CccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHH
Q 008895 171 -FDSMTMSWNS-KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248 (549)
Q Consensus 171 -~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g 248 (549)
+.++...... ..........++++++++|||||||.||+|.++|.++..+............+.++++..+|++|.+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g 265 (567)
T PRK06178 186 GAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAG 265 (567)
T ss_pred ccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHH
Confidence 0000000000 00111223456899999999999999999999999998776554443334677889999999999999
Q ss_pred H-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEe--cCCCCHHHHH
Q 008895 249 L-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG--AAPLGKDTIM 325 (549)
Q Consensus 249 ~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~--Ge~l~~~~~~ 325 (549)
+ ..++.++..|+++++.+.+++..+++.++++++|.++++|..+..+..........+++++.+..+ |+++++++.+
T Consensus 266 ~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (567)
T PRK06178 266 ENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQ 345 (567)
T ss_pred HHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHH
Confidence 8 567788999999999998999999999999999999999999998887665555567788886544 5999999999
Q ss_pred HHHHhCCCCcEEcccCccccccceecccCcC-C----CCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcc
Q 008895 326 AFASKFPKVVLVQAYGLTESTAGVFRTVGPD-E----CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400 (549)
Q Consensus 326 ~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-~----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~ 400 (549)
.+++.++...+.+.||+||++..+....... . ....+++|+|++|++++++|++++++++.|+.|||+|+|++++
T Consensus 346 ~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~ 425 (567)
T PRK06178 346 RWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLL 425 (567)
T ss_pred HHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCccc
Confidence 9999985444445799999876544321111 0 1234678999999999999988899999999999999999999
Q ss_pred cccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCC
Q 008895 401 KGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480 (549)
Q Consensus 401 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~ 480 (549)
.||+++++.+...| .+|||+|||+|+++++|++++.||++|+|+++|.+|+|.+||+++.++++|.++++++.++...+
T Consensus 426 ~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g 504 (567)
T PRK06178 426 KGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKG 504 (567)
T ss_pred ccccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccC
Confidence 99999999888777 57899999999999999999999999999999999999999999999999999999999887778
Q ss_pred ceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 481 QMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 481 ~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+.+++++++.+....+.+++.++++++++.+++|. +.+++++|+|++||++|++|++++++
T Consensus 505 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 505 QVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEE 565 (567)
T ss_pred cceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EEEeccCCCCCccceeHHHHHHHHHh
Confidence 89999999877666788999999999999999997 88899999999999999999998865
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=544.74 Aligned_cols=478 Identities=24% Similarity=0.333 Sum_probs=406.6
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
+.|+.+.+...++++ |+++|+++. ++.+||.||.++++++|++|++ .|+++|++|+++++|++++++++|||+
T Consensus 34 ~~~~~~~~~~~a~~~----p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~ 106 (516)
T PRK13383 34 GTNPYTLLAVTAARW----PGRTAIIDD--DGALSYRELQRATESLARRLTR-DGVAPGRAVGVMCRNGRGFVTAVFAVG 106 (516)
T ss_pred CCcHHHHHHHHHHHC----CCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 479999999999999 999999986 6799999999999999999998 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEE
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
++|++++|+++.++.+++.++++.++++++++++...+.+.......+.++..... . ... . ......++.++
T Consensus 107 ~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~----~--~~p~~~~~~~~ 178 (516)
T PRK13383 107 LLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAG-A-EES----G--GRPAVAAPGRI 178 (516)
T ss_pred HhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccchhh-h-hcC----C--CCCCCCCCCcE
Confidence 99999999999999999999999999999999988777665443333333321110 0 000 0 01112355678
Q ss_pred EEccCCCCCccchhhhcHHHHHHH--HHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAA--VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMML 274 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~--~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~ 274 (549)
++|||||||.||+|.++|...... .......+ ....+++++..+|++|.+|+...+.++..|++++....+++..++
T Consensus 179 il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~ 257 (516)
T PRK13383 179 VLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAAL 257 (516)
T ss_pred EEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-ccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHH
Confidence 999999999999999999743211 11122222 456788999999999999998788889999999988889999999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecc
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~ 352 (549)
+.++++++|.++++|+++..+...... ....++++|.+++||++++++++++|.+.+ +..+++.||+||++..+...
T Consensus 258 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~ 336 (516)
T PRK13383 258 AQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALAT 336 (516)
T ss_pred HHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceecc
Confidence 999999999999999999999875432 223578999999999999999999999999 67899999999998665443
Q ss_pred cCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCC
Q 008895 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDG 432 (549)
Q Consensus 353 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g 432 (549)
. .......+++|.|+++++++|+| +++++++.|+.|||+++|+.++.||++.+.. .+ .+|||+|||+|++|++|
T Consensus 337 ~-~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~~G 410 (516)
T PRK13383 337 P-ADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDNAG 410 (516)
T ss_pred c-cccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCchh---he-ecCceecceeEEEcCCc
Confidence 2 12233457899999999999999 6688999999999999999999999987542 22 47999999999999999
Q ss_pred eEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Q 008895 433 FLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYK 512 (549)
Q Consensus 433 ~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~ 512 (549)
++++.||.+|++|++|++|+|.+||.+|.++|.|.+++++++++...++.+.++|+..+....+.+++++++++++++++
T Consensus 411 ~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~ 490 (516)
T PRK13383 411 RLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFE 490 (516)
T ss_pred cEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999998888899999999887666778899999999999999
Q ss_pred cccEEEEeCccCCCCCCcccHHHHH
Q 008895 513 KIRRVAFINAIPKSAAGKILRMELR 537 (549)
Q Consensus 513 ~p~~i~~v~~lP~t~~GKv~r~~l~ 537 (549)
+|..++++++||+|++||++|++|+
T Consensus 491 ~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 491 QPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred CCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 9999999999999999999999985
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=541.62 Aligned_cols=487 Identities=21% Similarity=0.302 Sum_probs=410.8
Q ss_pred CHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHc
Q 008895 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (549)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~ 118 (549)
++.+.+...+..+ |+++|+.+. ++.+||.||.+++.++|+.|.+ .|+++|++|+++++|+.++++++|||+++
T Consensus 1 ~~~~~l~~~a~~~----p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~ 73 (502)
T TIGR01734 1 KLIEAIQAFAETY----PQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQK-RILPKKSPIIVYGHMEPHMLVAFLGSIKS 73 (502)
T ss_pred CHHHHHHHHHHHC----CCceEEEcC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCeEEEEeCCCHHHHHHHHHHHHh
Confidence 4678888888888 999999877 7899999999999999999998 89999999999999999999999999999
Q ss_pred CCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEEE
Q 008895 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIM 198 (549)
Q Consensus 119 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 198 (549)
|++++|+++.++.+.+.++++..+++.++++.......... ..+.++. ......... . ........+++.++++
T Consensus 74 G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~-~-~~~~~~~~~~~~~~il 147 (502)
T TIGR01734 74 GHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGT--QIITLSA--LEQAETSGG-P-VSFDHAVKGDDNYYII 147 (502)
T ss_pred CCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccCC--ceEEchH--hhhhhhhcC-C-ccccccCCCCCeEEEE
Confidence 99999999999999999999999999999987654433221 2222221 111111110 0 1111224568899999
Q ss_pred ccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHHHHH
Q 008895 199 YSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMMLK 275 (549)
Q Consensus 199 ~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~~~~ 275 (549)
|||||||.||+|.++|+++..........+ ....+++++..+|++|..++...+.++..|+++++.+. .++..+++
T Consensus 148 ~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~ 226 (502)
T TIGR01734 148 YTSGSTGNPKGVQISHDNLVSFTNWMLADF-PLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFE 226 (502)
T ss_pred ECCCCCCCCCEEEEecHHHHHHHHHHHHhC-CCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHH
Confidence 999999999999999999998887766666 46778899999999999999888999999999998764 57899999
Q ss_pred HHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCc
Q 008895 276 AVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355 (549)
Q Consensus 276 ~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~ 355 (549)
.+.+++++.+.++|+++..++.........+++++.++++|+++++++.+++.+.++++.+++.||+||++.........
T Consensus 227 ~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~ 306 (502)
T TIGR01734 227 ELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKIT 306 (502)
T ss_pred HHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEcc
Confidence 99999999999999999877765544555688999999999999999999999999899999999999987544332111
Q ss_pred C---CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccC---CCCeeecCceEEEe
Q 008895 356 D---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL---PDGWMRTGDLCYID 429 (549)
Q Consensus 356 ~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---~~~~~~TGD~~~~~ 429 (549)
. ......++|.+.++++++|+| +++++++.|+.|||+|+|+.++.||+++++.+...|. ..+||+|||+|+++
T Consensus 307 ~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~ 385 (502)
T TIGR01734 307 QEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT 385 (502)
T ss_pred ccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEE
Confidence 1 112335799999999999999 5688999999999999999999999999998887663 23599999999998
Q ss_pred cCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeec-CCCCCceeEEEEEeCCCCCCC----HHHHHHHH
Q 008895 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP-DEEAGQMPMAFVVRQPHSSLN----EAEIMEFV 504 (549)
Q Consensus 430 ~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~-~~~~~~~~~~~v~~~~~~~~~----~~~i~~~l 504 (549)
++ ++++.||.+|+|+++|++|+|.+||+++.++|.|.++++++.. +....+.++++++.......+ ..++++.+
T Consensus 386 ~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~ 464 (502)
T TIGR01734 386 DG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKEL 464 (502)
T ss_pred CC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHH
Confidence 76 9999999999999999999999999999999999999999976 444567888998876543322 26789999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
+++|+++++|+.++++++||+|++||++|++|++++.
T Consensus 465 ~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 465 KKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred hhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 9999999999999999999999999999999999864
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-66 Score=542.33 Aligned_cols=491 Identities=25% Similarity=0.372 Sum_probs=415.6
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
..++.+.+.+.++ |+++|+++. ++.+||.||.++++++|+.|.+ .|+++|++|+++++|+++++++++||+
T Consensus 24 ~~~~~~~~~~~a~------p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~v~~~n~~~~~~~~la~~ 94 (536)
T PRK10946 24 DLPLTDILTRHAA------SDAIAVICG--ERQFSYRELNQASDNLACSLRR-QGIKPGDTALVQLGNVAEFYITFFALL 94 (536)
T ss_pred CccHHHHHHHhhC------CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCChHHHHHHHHHHH
Confidence 3688999977775 789999987 7899999999999999999999 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCcc--------HHHHhcC--CCeEEEecCC----chhhhhcccCCCc
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV--------VHKLAKL--KHRTILIDSP----EFDSMTMSWNSKH 182 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--------~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~ 182 (549)
++|+++++..+.....++..+++..++++++++... ...+... ....+.+... .+.........
T Consensus 95 ~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 172 (536)
T PRK10946 95 KLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAINHPAE-- 172 (536)
T ss_pred HcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHHhhCccc--
Confidence 999988877777778889999999999999998642 1222211 1222222211 22222222111
Q ss_pred cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH--HHHHHhhhcc
Q 008895 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALME 260 (549)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~g~ 260 (549)
........+++.++++|||||||.||+|.++|+++...+......+ ....++++++.+|++|.+++. ..+.++..|+
T Consensus 173 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~ 251 (536)
T PRK10946 173 DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-GFTPQTRYLCALPAAHNYPMSSPGALGVFLAGG 251 (536)
T ss_pred ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCceEEEecCccccccchhhhHHHHhhcCc
Confidence 1112234568899999999999999999999999999888776666 467789999999999988873 4678899999
Q ss_pred EEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCC--CCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEc
Q 008895 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~--~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~ 338 (549)
++++...+++..+++.++++++|++.++|+++..+++.. ......++++|.+++||+++++++.+++.+.+ ++++++
T Consensus 252 ~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~ 330 (536)
T PRK10946 252 TVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQ 330 (536)
T ss_pred EEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEE
Confidence 999988889999999999999999999999999988763 22334578999999999999999999999988 789999
Q ss_pred ccCccccccceecccCcCCCCCCCcccccc-CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCC
Q 008895 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD 417 (549)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~ 417 (549)
.||+||++..... .........+++|+|+ +++.++|+| +++++++.|+.|||+++|+.++.||+++++.+...|..+
T Consensus 331 ~YG~tE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d 408 (536)
T PRK10946 331 VFGMAEGLVNYTR-LDDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDAN 408 (536)
T ss_pred eecccccceeeec-CCCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccC
Confidence 9999996543322 1222223457899998 899999999 678999999999999999999999999999999999889
Q ss_pred CeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH
Q 008895 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE 497 (549)
Q Consensus 418 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~ 497 (549)
+||+|||+|++|++|++++.||.+|+++++|++|+|.+||++|.++|+|.+++|++.++...++.++++++.++. .+.
T Consensus 409 ~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~~ 486 (536)
T PRK10946 409 GFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LKA 486 (536)
T ss_pred CceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--CCH
Confidence 999999999999999999999999999999999999999999999999999999999998888889999987654 678
Q ss_pred HHHHHHHHhc-CCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 498 AEIMEFVARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 498 ~~i~~~l~~~-l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+++.+++++. +++|++|..+.+++++|+|++||++|++|++++.+..
T Consensus 487 ~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~ 534 (536)
T PRK10946 487 VQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 534 (536)
T ss_pred HHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhc
Confidence 8999999885 9999999999999999999999999999999876543
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-66 Score=546.07 Aligned_cols=496 Identities=23% Similarity=0.348 Sum_probs=412.0
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~ 115 (549)
.++.+++.+.++.+ |+++++.+.. ..+.+||.||.++++++|++|.+ .|+++||+|+++++|+++++++++||
T Consensus 10 ~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~~d~v~i~~~~~~~~~~~~la~ 84 (539)
T PRK07008 10 LLISSLIAHAARHA----GDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAA-LGVEPGDRVGTLAWNGYRHLEAYYGV 84 (539)
T ss_pred CCHHHHHHHHHhhC----CCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57889999989888 8888887532 23689999999999999999999 89999999999999999999999999
Q ss_pred HHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCe-EEEecC-----------Cchhhhhccc
Q 008895 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDS-----------PEFDSMTMSW 178 (549)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~-----------~~~~~~~~~~ 178 (549)
+++|++++|++|..+.+++..+++.+++++++++....+.+.+. ... ++.+.. ..++++....
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (539)
T PRK07008 85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQ 164 (539)
T ss_pred HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhccc
Confidence 99999999999999999999999999999999998765543321 111 111111 1122221111
Q ss_pred CCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHH--hhccCCCCCCCcEEEEecChhhHHHHHHHHHHh
Q 008895 179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS--SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256 (549)
Q Consensus 179 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~--~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l 256 (549)
.. ........+++.++++|||||||.||+|+++|++++.+... ....+ ....+++++..+|++|.+++...+.++
T Consensus 165 ~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l 241 (539)
T PRK07008 165 DG--DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-GLSARDAVLPVVPMFHVNAWGLPYSAP 241 (539)
T ss_pred CC--CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-CCCCCceEEecCchHHhhhHHHHHHHH
Confidence 10 11122345678999999999999999999999998754322 22233 456789999999999988887677888
Q ss_pred hhccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCc
Q 008895 257 ALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335 (549)
Q Consensus 257 ~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~ 335 (549)
..|+++++.. .+++..+++.++++++|++.++|+++..+++........++++|.++++|+++++++++++.+.+ ++.
T Consensus 242 ~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~ 320 (539)
T PRK07008 242 LTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVE 320 (539)
T ss_pred hcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCc
Confidence 8999998864 57899999999999999999999999999987766666789999999999999999999999988 789
Q ss_pred EEcccCccccccceecccCcC---------CCCCCCccccccCCcEEEEEcCCCCCcCCCC--CcceEEEecCCcccccC
Q 008895 336 LVQAYGLTESTAGVFRTVGPD---------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPG--KEGELSIRGPTIMKGYV 404 (549)
Q Consensus 336 l~~~yG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gy~ 404 (549)
+++.||+||++..+....... ......++|+|+|++.++|+| ++++.++.+ +.|||+++|+.++.||+
T Consensus 321 l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~ 399 (539)
T PRK07008 321 VIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYF 399 (539)
T ss_pred eecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhc
Confidence 999999999986544321100 011235789999999999999 567777653 57999999999999999
Q ss_pred CCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeE
Q 008895 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484 (549)
Q Consensus 405 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~ 484 (549)
++++ ..+ .+|||+|||+|+++++|++++.||++|+++.+|++|+|.+||++|.++|.|.++++++.++...++.++
T Consensus 400 ~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~ 475 (539)
T PRK07008 400 RGDA---SPL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPL 475 (539)
T ss_pred CChh---hhh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceE
Confidence 9873 234 378999999999999999999999999999999999999999999999999999999999887788899
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCCCc
Q 008895 485 AFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSSC 547 (549)
Q Consensus 485 ~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~~ 547 (549)
++|+..++...+.+++++++++++++|+.|+.|+++++||+|++||++|++|++++.+-.++.
T Consensus 476 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~~~~~ 538 (539)
T PRK07008 476 LVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDYVLPT 538 (539)
T ss_pred EEEEeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhhcccC
Confidence 998887666678899999999999999999999999999999999999999999988766653
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=652.05 Aligned_cols=485 Identities=22% Similarity=0.292 Sum_probs=424.8
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++++ |+++|++++ ++++||+||.++++++|+.|++ .|+++|++|+++++|+.++++++|||++
T Consensus 511 ~~~~~~~~~~a~~~----p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L~~-~gv~~g~~V~l~~~~s~~~i~~~la~~~ 583 (5163)
T PRK12316 511 RGVHRLFEEQVERT----PEAPALAFG--EETLDYAELNRRANRLAHALIE-RGVGPDVLVGVAMERSIEMVVALLAILK 583 (5163)
T ss_pred CCHHHHHHHHHHHC----CCCeEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-CCeEEEecCCchhhhhcccCCCccccccccCCCCEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
+|++++|++|.++.+++.+++++++++++|++......+... ...++.++... ....... .........++++++
T Consensus 584 aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~a~ 659 (5163)
T PRK12316 584 AGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPA--AWLEGYS--EENPGTELNPENLAY 659 (5163)
T ss_pred cCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCcc--hhhccCC--CCCCCCCCCCCCeEE
Confidence 999999999999999999999999999999998765544322 23344443221 1111111 011222356789999
Q ss_pred EEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEec---CcCHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ---RFDLKMM 273 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~---~~~~~~~ 273 (549)
++|||||||.||||+++|+++.+.+.+....+ +...+++++..+|++|..+++.++.++..|+++++.+ .+++..+
T Consensus 660 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~ 738 (5163)
T PRK12316 660 VIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-GLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKL 738 (5163)
T ss_pred EEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-CCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHH
Confidence 99999999999999999999999998887777 4678899999999999999999999999999999985 3789999
Q ss_pred HHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 274 ~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
++.+.++++|++.++|+++..|++... ...++++|.+++|||++++++.+.+.+.++++++++.||+||++..+....
T Consensus 739 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 816 (5163)
T PRK12316 739 VELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWT 816 (5163)
T ss_pred HHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEe
Confidence 999999999999999999999987543 235789999999999999999999998888899999999999986554433
Q ss_pred CcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeecCceEE
Q 008895 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGDLCY 427 (549)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------~~~~~TGD~~~ 427 (549)
.........++|+|++|++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|.. ++||+|||+|+
T Consensus 817 ~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~ 895 (5163)
T PRK12316 817 CVEEGGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLAR 895 (5163)
T ss_pred cccccCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEE
Confidence 222333456899999999999999 66899999999999999999999999999999988854 35999999999
Q ss_pred EecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhc
Q 008895 428 IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQ 507 (549)
Q Consensus 428 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~ 507 (549)
+++||.++++||+||+||++|++|+|.|||++|.+||+|.+|+|++.+ ++.++++|+..++.....++++++++++
T Consensus 896 ~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~~~~~l~~~l~~~ 971 (5163)
T PRK12316 896 YRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDWREALKAHLAAS 971 (5163)
T ss_pred ECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999875 6789999998776667789999999999
Q ss_pred CCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 508 VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 508 l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
|+.|++|+.|+++++||+|++|||||++|++...
T Consensus 972 Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 972 LPEYMVPAQWLALERLPLTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred CCCccCCCeEEEHhhCCCCCCCChhHHhhcCccc
Confidence 9999999999999999999999999999987654
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-67 Score=652.87 Aligned_cols=488 Identities=20% Similarity=0.294 Sum_probs=423.7
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.++++++ |+++|++++ ++++||+||+++++++|++|++ .|+++|++|++++++++++++++|||++
T Consensus 2003 ~~~~~~~~~~a~~~----p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~~~~~lAil~ 2075 (5163)
T PRK12316 2003 PGVHQRIAEQAARA----PEAIAVVFG--DQHLSYAELDSRANRLAHRLRA-RGVGPEVRVAIAAERSFELVVALLAVLK 2075 (5163)
T ss_pred CCHHHHHHHHHHhC----CCCeEEEcC--CCeEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 58999999999999 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-CCeEEEecCCchhhhhcccCCCccccccccCCCCEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
+|++++|++|.++.+++.+++++++++++++++.....+... ....+.++.. ...... . . ........++++++
T Consensus 2076 aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-~-~~~~~~~~~~~~a~ 2150 (5163)
T PRK12316 2076 AGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRD--AEWADY-P-D-TAPAVQLAGENLAY 2150 (5163)
T ss_pred hceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccch--hhhhcc-C-c-cCCCCCCCCCCeEE
Confidence 999999999999999999999999999999998766544321 2222322221 111110 0 0 11123357889999
Q ss_pred EEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC--cCHHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR--FDLKMML 274 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~--~~~~~~~ 274 (549)
++|||||||.||||+++|+++.+.+......+ ...++++++...|++|..+++.++.++..|+++++.+. +++..++
T Consensus 2151 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~ 2229 (5163)
T PRK12316 2151 VIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-ELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLY 2229 (5163)
T ss_pred EEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-CCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHH
Confidence 99999999999999999999999998877777 47788999999999999888999999999999977653 6889999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.|+++++|+++++|+++..+........ ..+++|.+++|||++++++.++|.+.+++..+++.||+||++..++....
T Consensus 2230 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 2308 (5163)
T PRK12316 2230 DEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKC 2308 (5163)
T ss_pred HHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeec
Confidence 99999999999999999999987543322 24589999999999999999999998888999999999999876654322
Q ss_pred cCCC---CCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC-------CCeeecCc
Q 008895 355 PDEC---RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-------DGWMRTGD 424 (549)
Q Consensus 355 ~~~~---~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-------~~~~~TGD 424 (549)
.... ....++|+|++|++++|+| +++++++.|..|||+|+|+++++||+++|+.|.+.|.. ++||+|||
T Consensus 2309 ~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGD 2387 (5163)
T PRK12316 2309 RPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGD 2387 (5163)
T ss_pred ccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEeccc
Confidence 2111 1225799999999999999 67899999999999999999999999999999999854 35999999
Q ss_pred eEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 008895 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV 504 (549)
Q Consensus 425 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l 504 (549)
+|++++||.++++||+||+||++|++|+|.|||++|.++|+|.+++|++.++. .++.+++||+..+....+.+++++++
T Consensus 2388 l~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~~~~~l~~~l 2466 (5163)
T PRK12316 2388 LARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAEDLLAELRAWL 2466 (5163)
T ss_pred EEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998765 67899999998877677889999999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
+++|+.|++|..++++++||+|++|||||++|++...
T Consensus 2467 ~~~Lp~~~vP~~~~~l~~lP~t~~GKidR~~L~~~~~ 2503 (5163)
T PRK12316 2467 AARLPAYMVPAHWVVLERLPLNPNGKLDRKALPKPDV 2503 (5163)
T ss_pred HhhCchhcCcceEeeecccCCCCCCccCHhhcCCCcc
Confidence 9999999999999999999999999999999988653
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-66 Score=543.79 Aligned_cols=493 Identities=24% Similarity=0.326 Sum_probs=413.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|...++++ |+++|+++. ++++||.||.+++.++|+.|.+ .|+++|++|+++++|+.+++++++||++
T Consensus 10 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~-~g~~~g~~V~i~~~n~~~~~~~~la~~~ 82 (540)
T PRK06164 10 DTLASLLDAHARAR----PDAVALIDE--DRPLSRAELRALVDRLAAWLAA-QGVRRGDRVAVWLPNCIEWVVLFLACAR 82 (540)
T ss_pred CCHHHHHHHHHHhC----CCCeEEecC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 68999999999999 999999976 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH-----HHHhcC------CC-eEEEecCCc--hh--------hhh
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLAKL------KH-RTILIDSPE--FD--------SMT 175 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~------~~-~~~~~~~~~--~~--------~~~ 175 (549)
+|++++|+++..+.+++.++++.+++++++++.+.. +.+... .. .++.++... .. ...
T Consensus 83 ~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (540)
T PRK06164 83 LGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLF 162 (540)
T ss_pred hCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccc
Confidence 999999999999999999999999999999987642 111111 11 122222100 00 000
Q ss_pred cccCCCccc--cccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHH
Q 008895 176 MSWNSKHEL--DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF 253 (549)
Q Consensus 176 ~~~~~~~~~--~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~ 253 (549)
......... ......++++++++|||||||.||+|.++|+++..........+ ....++++++.+|++|.+|+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~~~~~ 241 (540)
T PRK06164 163 ALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-GYDPGAVLLAALPFCGVFGFSTLL 241 (540)
T ss_pred cccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEcCCchhHHHHHHHH
Confidence 000000000 01123457899999999999999999999999998887776666 466889999999999999998889
Q ss_pred HHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEec-CCCCHHHHHHHHHhCC
Q 008895 254 RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA-APLGKDTIMAFASKFP 332 (549)
Q Consensus 254 ~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~G-e~l~~~~~~~~~~~~~ 332 (549)
.++..|+++++.+.+++..+++.|+++++|+++++|+++..+.+.. .....+++++.+.++| .+...++.+++.+.
T Consensus 242 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 318 (540)
T PRK06164 242 GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR-- 318 (540)
T ss_pred HHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc--
Confidence 9999999999998899999999999999999999999999998862 2345678899887766 55556677776665
Q ss_pred CCcEEcccCccccccceecccCcC-CCCCCCcccccc-CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCcccc
Q 008895 333 KVVLVQAYGLTESTAGVFRTVGPD-ECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT 410 (549)
Q Consensus 333 ~~~l~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~ 410 (549)
++.+++.||+||++.+........ ......+.|.++ +++.++|+|++++++++.|+.|||+|+|++++.||+++++.+
T Consensus 319 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t 398 (540)
T PRK06164 319 GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDAT 398 (540)
T ss_pred CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhh
Confidence 788999999999987655432211 122234567775 899999999889999999999999999999999999999999
Q ss_pred ccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeC
Q 008895 411 SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQ 490 (549)
Q Consensus 411 ~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~ 490 (549)
...|..++||+|||+|+++++|.+++.||.+|++|++|++|+|.+||++|.++++|.+++|++.+. ..++.++++++..
T Consensus 399 ~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~~ 477 (540)
T PRK06164 399 ARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIPT 477 (540)
T ss_pred hhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEeC
Confidence 999988999999999999999999999999999999999999999999999999999999999884 3457889999987
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCC---cccHHHHHcccCc
Q 008895 491 PHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAG---KILRMELRKVAVP 542 (549)
Q Consensus 491 ~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~G---Kv~r~~l~~~~~~ 542 (549)
++...+.+++.++++++|+++++|..|++++++|+|++| |++|++|++++.+
T Consensus 478 ~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~ 532 (540)
T PRK06164 478 DGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQA 532 (540)
T ss_pred CCCCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHH
Confidence 766678899999999999999999999999999999999 9999999998654
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-66 Score=549.44 Aligned_cols=492 Identities=21% Similarity=0.272 Sum_probs=400.5
Q ss_pred CCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHH
Q 008895 36 APISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (549)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~ 115 (549)
.+.++.+.|...++++ |+++|+++. ++.+||+||.++++++|.+|.+ .|+++|++|+++++|+.+++++++||
T Consensus 35 ~~~tl~~~l~~~a~~~----p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~v~~~lA~ 107 (600)
T PRK08279 35 SKRSLGDVFEEAAARH----PDRPALLFE--DQSISYAELNARANRYAHWAAA-RGVGKGDVVALLMENRPEYLAAWLGL 107 (600)
T ss_pred CcccHHHHHHHHHHhC----CCCcEEEeC--CCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 3479999999999999 999999987 7899999999999999999999 89999999999999999999999999
Q ss_pred HHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCeEEEecC-------CchhhhhcccCCCc-
Q 008895 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRTILIDS-------PEFDSMTMSWNSKH- 182 (549)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~- 182 (549)
+++|++++|+++..+.+++.++++.++++++|++.+....+... ....+.+.. ..+.++........
T Consensus 108 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (600)
T PRK08279 108 AKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPT 187 (600)
T ss_pred HhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCc
Confidence 99999999999999999999999999999999998766654422 111122211 11222221111000
Q ss_pred --cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHH-HHHHhhhc
Q 008895 183 --ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALM 259 (549)
Q Consensus 183 --~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~-~~~~l~~g 259 (549)
.........+++++++|||||||.||+|.++|+++.+++......+ ...+.++++..+|++|.+++.. .+.++..|
T Consensus 188 ~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 266 (600)
T PRK08279 188 TNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLTPDDVLYCCLPLYHNTGGTVAWSSVLAAG 266 (600)
T ss_pred cCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-CCCCCcEEEEecCchhhhhHHHHHHHHHhcC
Confidence 1111234568899999999999999999999999999888777665 5778899999999999999854 45667788
Q ss_pred cEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+++++.+.+++..+++.+.++++|++.++|+++..++...........++|. ++|++++++++++|.+.++...+++.
T Consensus 267 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~ 344 (600)
T PRK08279 267 ATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEF 344 (600)
T ss_pred cEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeE--EecCCCCHHHHHHHHHHhCcceeeee
Confidence 8888888899999999999999999999999999988765444444566665 45888999999999999966679999
Q ss_pred cCccccccceecccCcCCCCCCCccccccC----CcEEEEEcCCC----------CCcCCCCCcceEE--EecCCccccc
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSA----GLEAKIVDPET----------GDSLPPGKEGELS--IRGPTIMKGY 403 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~----~~~~~i~d~~~----------~~~~~~g~~Gel~--v~g~~~~~gy 403 (549)
||+||++...... ....+++|.+.+ +..+...+.+. ...++.|+.|||+ ++|+.++.||
T Consensus 345 YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY 419 (600)
T PRK08279 345 YAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY 419 (600)
T ss_pred ecccccceeeccc-----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc
Confidence 9999987543321 123456776655 33332222111 1357889999998 7799999999
Q ss_pred CCCccccccccC------CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCC
Q 008895 404 VGEPEVTSATLL------PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477 (549)
Q Consensus 404 ~~~~~~~~~~~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~ 477 (549)
++++.+...|. .++||+|||+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+|+|+++++.
T Consensus 420 -~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~ 498 (600)
T PRK08279 420 -TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVP 498 (600)
T ss_pred -CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecC
Confidence 88887776653 25799999999999999999999999999999999999999999999999999999998765
Q ss_pred CC-CceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 478 EA-GQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 478 ~~-~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
.. +...+++++..++...+.++++++++++|++|++|..|+++++||+|++||++|++|++++...
T Consensus 499 ~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 499 GTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred CCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence 43 4445566665555566889999999999999999999999999999999999999999988766
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=543.38 Aligned_cols=492 Identities=27% Similarity=0.430 Sum_probs=410.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|...++++ |+++|+++. ++++||.||.++++++|+.|+...|+++|++|+++++|+.++++++|||++
T Consensus 25 ~~~~~~l~~~~~~~----~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 98 (560)
T PRK08751 25 RTVAEVFATSVAKF----ADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLR 98 (560)
T ss_pred CcHHHHHHHHHHhC----CCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 58999999999999 999999987 789999999999999999997338999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----CCCe-EEEecCC-----------------------
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILIDSP----------------------- 169 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~-~~~~~~~----------------------- 169 (549)
+|++++|++|.++.+++.++++.++++++++++.....+.. .... ++..+..
T Consensus 99 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (560)
T PRK08751 99 AGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVP 178 (560)
T ss_pred hCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhcccc
Confidence 99999999999999999999999999999998876554432 1111 1111100
Q ss_pred --------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCC---CCC-CCcEE
Q 008895 170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP---KRV-SPAVM 237 (549)
Q Consensus 170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~---~~~-~~~~~ 237 (549)
.+.+...... ..........+++.++++|||||||.||+|.++|.++..........+. ... ..+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (560)
T PRK08751 179 EYRINGAIRFREALALGR-KHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVV 257 (560)
T ss_pred ccCCCccccHHHHHhccC-CCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceE
Confidence 0011100000 0001112235678999999999999999999999999887765444331 122 24577
Q ss_pred EEecChhhHHHHH-HHHHHhhhccEEEEe-cCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEe
Q 008895 238 LFTMPYFHIYGLF-FCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (549)
Q Consensus 238 ~~~~pl~~~~g~~-~~~~~l~~g~~~~~~-~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~ 315 (549)
+..+|++|.+++. ..+.++..|++.++. ..+++..+++.+.++++|++..+|.++..+.+.......+++++|.+++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~g 337 (560)
T PRK08751 258 ITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGG 337 (560)
T ss_pred EEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeC
Confidence 8889999999883 345566666665554 45789999999999999999999999999988765555678899999999
Q ss_pred cCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEe
Q 008895 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (549)
Q Consensus 316 Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (549)
|+++++.+.+.|++.+ ++.+++.||+||++..+..... ......+++|.|++++.++++| ++++.++.|+.|||+|+
T Consensus 338 G~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~ 414 (560)
T PRK08751 338 GMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPL-TLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIK 414 (560)
T ss_pred CCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccc-cccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEe
Confidence 9999999999999988 7889999999999876654322 2223457899999999999999 67899999999999999
Q ss_pred cCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeec
Q 008895 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475 (549)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~ 475 (549)
|+.++.||+++++.+...|..+|||+|||+|+++++|++++.||.+|+++++|.+|+|.+||++|..+++|.+++|++++
T Consensus 415 ~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~ 494 (560)
T PRK08751 415 GPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVP 494 (560)
T ss_pred cCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecC
Confidence 99999999999999988887789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 476 DEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 476 ~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
+...++.++++++.. ....+.++++++++++++.+++|..++++++||+|++||++|++|++..
T Consensus 495 ~~~~ge~~~~~v~~~-~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~~ 558 (560)
T PRK08751 495 DEKSGEIVKVVIVKK-DPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILRRELRDAA 558 (560)
T ss_pred CCCCCceEEEEEEcC-CCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCccccccHHHHHHhh
Confidence 887788888777754 3456788999999999999999999999999999999999999999874
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=540.85 Aligned_cols=498 Identities=23% Similarity=0.360 Sum_probs=413.1
Q ss_pred CCCCHHHHHhhcccCCCCCCCCCcEEEEC--CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 36 APISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~p~~~a~~~~--~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
.++++.+++...++++ |++++++.. ...+++||.||.++++++|++|++ .|+++||+|+++++|+.+++++++
T Consensus 8 ~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~-~g~~~gd~v~i~~~~~~~~~~~~l 82 (542)
T PRK06018 8 WPLLCHRIIDHAARIH----GNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDR-DGIKLGDRVATIAWNTWRHLEAWY 82 (542)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHH
Confidence 3489999999999999 999999853 223789999999999999999999 899999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CC-eEEEecCC------------chhhhh
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------------EFDSMT 175 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~------------~~~~~~ 175 (549)
||+++|++++|++|..+.+++..+++.+++++++++......+.+. .. ..+.+... .+.++.
T Consensus 83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (542)
T PRK06018 83 GIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWI 162 (542)
T ss_pred HHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHh
Confidence 9999999999999999999999999999999999998766554321 11 12222111 122221
Q ss_pred cccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHH-HHHHH-hhccCCCCCCCcEEEEecChhhHHHHHHHH
Q 008895 176 MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT-AAVAS-SFASSPKRVSPAVMLFTMPYFHIYGLFFCF 253 (549)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~-~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~ 253 (549)
..... ........++++++++|||||||.||+|.++|++.+ ..... ....+ ....+++++..+|++|.+++...+
T Consensus 163 ~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~h~~~~~~~~ 239 (542)
T PRK06018 163 AEADG--DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAADTMLPVVPLFHANSWGIAF 239 (542)
T ss_pred ccCCc--ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-CCCCCCEEEEecCHHHHhhhHHHH
Confidence 11110 111123455779999999999999999999999743 22222 22233 467788999999999999887667
Q ss_pred HHhhhccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCC
Q 008895 254 RAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332 (549)
Q Consensus 254 ~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~ 332 (549)
.++..|+++++.. .+++..+++.++++++|+++++|+++..+.+.......+++++|.++++|++++++++++|++ +
T Consensus 240 ~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~- 317 (542)
T PRK06018 240 SAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M- 317 (542)
T ss_pred hhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-
Confidence 7888999988764 578899999999999999999999999998877655667889999999999999999999999 6
Q ss_pred CCcEEcccCccccccceecccCcCC---------CCCCCccccccCCcEEEEEcCCCCCcCCCC--CcceEEEecCCccc
Q 008895 333 KVVLVQAYGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPPG--KEGELSIRGPTIMK 401 (549)
Q Consensus 333 ~~~l~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~ 401 (549)
++.+++.||+||++.++........ .....+.|+|.++++++|+| ++++.++.+ ..|||+++|+.++.
T Consensus 318 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~ 396 (542)
T PRK06018 318 GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAA 396 (542)
T ss_pred CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcch
Confidence 8899999999999876554321110 01135789999999999999 567777653 67999999999999
Q ss_pred ccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCc
Q 008895 402 GYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ 481 (549)
Q Consensus 402 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~ 481 (549)
||++. +...+..++||+|||+++++++|++++.||.+|+++.+|.+|++.+||.++.++|+|.+|+|++.++...++
T Consensus 397 gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~ 473 (542)
T PRK06018 397 AYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDE 473 (542)
T ss_pred hhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCc
Confidence 99984 233455689999999999999999999999999999999999999999999999999999999999888788
Q ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCCCc
Q 008895 482 MPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSSC 547 (549)
Q Consensus 482 ~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~~ 547 (549)
.+.++++..++...+.+++.++++++++.+++|..+.++++||+|++||++|++|++++.+-.++.
T Consensus 474 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~~~~~ 539 (542)
T PRK06018 474 RPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDYKLPT 539 (542)
T ss_pred eeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhccCCCC
Confidence 999999988777778899999999999999999999999999999999999999999998765543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=642.67 Aligned_cols=489 Identities=21% Similarity=0.309 Sum_probs=421.3
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++++ |+++|++++ ++.+||+||.++++++|++|.+ .|+++|++|++++++++++++++|||++
T Consensus 1574 ~~~~~~~~~~a~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~~~~V~l~~~~s~~~vv~~lavlk 1646 (3956)
T PRK12467 1574 RLVHQLIEDQAAAT----PEAVALVFG--EQELTYGELNRRANRLAHRLIA-LGVGPEVLVGIAVERSLEMVVGLLAILK 1646 (3956)
T ss_pred ccHHHHHHHHHHhC----CCCeEEEeC--CcEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCCHHHHHHHHHhhc
Confidence 57999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-CCeEEEecCCchhhhhcccCCCccccccccCCCCEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
+|++++|++|.++.+++.+++++++++++|++......+... ....+.++... ....... . ........++++++
T Consensus 1647 aG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~-~~~~~~~~~~~~ay 1722 (3956)
T PRK12467 1647 AGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQED--DWLEGYS-D-SNPAVNLAPQNLAY 1722 (3956)
T ss_pred cCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEecccc--chhccCC-C-CCCCCCCCCcCcEE
Confidence 999999999999999999999999999999988765554322 22344443221 1111111 0 11222346789999
Q ss_pred EEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMM 273 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~~ 273 (549)
++|||||||.||||+++|+++.+.+......+ .....++++...|+.|..+++.++.++..|+++++.++ .++..+
T Consensus 1723 iiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l 1801 (3956)
T PRK12467 1723 VIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-QLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQL 1801 (3956)
T ss_pred EEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-CCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHH
Confidence 99999999999999999999999888877766 46788999999999999999889999999999999763 578999
Q ss_pred HHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 274 ~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
++.|+++++|+++++|+++..|..... ....++++|.+++|||++++++.+.|.+.+++..++|.||+||++..+....
T Consensus 1802 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~ 1880 (3956)
T PRK12467 1802 IQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWT 1880 (3956)
T ss_pred HHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEe
Confidence 999999999999999999999987422 2345789999999999999999999999988888999999999987665432
Q ss_pred Cc---CCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC-------CCeeecC
Q 008895 354 GP---DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-------DGWMRTG 423 (549)
Q Consensus 354 ~~---~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-------~~~~~TG 423 (549)
.. .......++|+|++|++++|+| +.+++++.|..|||+|+|+++++||+++|+.|.++|.. ++||+||
T Consensus 1881 ~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1959 (3956)
T PRK12467 1881 CRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTG 1959 (3956)
T ss_pred ccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceecc
Confidence 21 1122346899999999999999 78899999999999999999999999999999998853 3599999
Q ss_pred ceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC--------
Q 008895 424 DLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL-------- 495 (549)
Q Consensus 424 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~-------- 495 (549)
|+|++++||.++++||+||+||++|++|+|.|||++|.++|+|.+++|++.+ ...++.++++++.......
T Consensus 1960 Dl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~~~~~~~~ 2038 (3956)
T PRK12467 1960 DLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVDDDEAQVA 2038 (3956)
T ss_pred ceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999986 4456789999987654321
Q ss_pred CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 496 NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 496 ~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
..++++++++++|+.|++|..++++++||+|++|||||++|++...
T Consensus 2039 ~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidr~~L~~~~~ 2084 (3956)
T PRK12467 2039 LRAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPDA 2084 (3956)
T ss_pred cHHHHHHHHHhhCchhhCchhhhhhhcCCCCCCCCcchhhCCCCcc
Confidence 3468999999999999999999999999999999999999987654
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-66 Score=540.67 Aligned_cols=476 Identities=28% Similarity=0.395 Sum_probs=390.4
Q ss_pred hcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccC
Q 008895 46 SLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125 (549)
Q Consensus 46 ~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l 125 (549)
.+++++ |+++|+++..+++++||+||.++++++|+.|.+ +|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 5 ~~a~~~----p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~-~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 5 THAQIA----PDRPAVIVAETGEQVSYRQLDDDSAALARVLYD-AGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAI 79 (501)
T ss_pred hhhhhC----CCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecc
Confidence 345566 999999875457899999999999999999998 899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCC--e-EEEecCC-----chhhhhcccCCCccccccccCCCCEEEE
Q 008895 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH--R-TILIDSP-----EFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
++.++.+++.+++..++++++++++........... . .+.+... .+++..... . .......+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~a~i 153 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAALAGA----G--PRLTEQPCGAVM 153 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecCcccccccHHHHhccc----C--CCCCCCcccEEE
Confidence 999999999999999999999998755433221111 1 1111110 111111100 0 001122356999
Q ss_pred EccCCCCCccchhhh--cHHHHHHHHH---H-hhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHH
Q 008895 198 MYSSGTTGRVKGVML--THRNLTAAVA---S-SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~--t~~~l~~~~~---~-~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~ 271 (549)
+|||||||.||+|.+ +|.++..... . ....+ .....++++..+|++|.+++......+..|+++++.+.+++.
T Consensus 154 ~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~ 232 (501)
T PRK13390 154 LYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-DISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQ 232 (501)
T ss_pred EeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-CCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCCcCHH
Confidence 999999999999995 4555443211 1 11122 356788999999999999885555567789999988888999
Q ss_pred HHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccce
Q 008895 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (549)
Q Consensus 272 ~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~ 349 (549)
.+++.|+++++|+++++|+++..+++.... ....++++|.+++||+++++++.+.+.+.+ +..+++.||+||++.++
T Consensus 233 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~ 311 (501)
T PRK13390 233 ATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMT 311 (501)
T ss_pred HHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceE
Confidence 999999999999999999999988865432 334578999999999999999999999988 67899999999998754
Q ss_pred ecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC--CCeeecCceEE
Q 008895 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP--DGWMRTGDLCY 427 (549)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~ 427 (549)
.... .......+++|+|+++ .++|+| +++++++.|+.|||+|+|++++.||+++++.+...+.+ ++|++|||+|+
T Consensus 312 ~~~~-~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~ 388 (501)
T PRK13390 312 FIDS-PDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGS 388 (501)
T ss_pred Eecc-hhhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEE
Confidence 4322 1122345789999999 799999 77899999999999999999999999999998887753 57999999999
Q ss_pred EecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCC---HHHHHHHH
Q 008895 428 IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLN---EAEIMEFV 504 (549)
Q Consensus 428 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~---~~~i~~~l 504 (549)
+|++|++++.||.||++|.+|++|+|.+||++|.++|+|.+++|+++++...++.+++++++.++...+ .+++.+++
T Consensus 389 ~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~ 468 (501)
T PRK13390 389 VDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYT 468 (501)
T ss_pred ECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988889999998876543322 46899999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHH
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~ 537 (549)
+++|+.+++|..++++++||+|++||++|++|+
T Consensus 469 ~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 469 RSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred HHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 999999999999999999999999999999985
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-66 Score=590.19 Aligned_cols=492 Identities=25% Similarity=0.339 Sum_probs=417.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.+.+.++++ |+++|+++. .++++||+||.++++++|+.|.+ ++++||+|+++++|+++++++++||++
T Consensus 615 ~~l~~~~~~~a~~~----p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~--~~~~g~~V~i~~~n~~~~~~~~la~~~ 687 (1146)
T PRK08633 615 PPLAEAWIDTAKRN----WSRLAVADS-TGGELSYGKALTGALALARLLKR--ELKDEENVGILLPPSVAGALANLALLL 687 (1146)
T ss_pred CCHHHHHHHHHHhc----CCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH--hCCCCCeEEEECCCchHHHHHHHHHHH
Confidence 57888998888888 999999874 35799999999999999999987 479999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC--------CCeEEEecCC--------chhhhhcccCCC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL--------KHRTILIDSP--------EFDSMTMSWNSK 181 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--------~~~~~~~~~~--------~~~~~~~~~~~~ 181 (549)
+|++++|++|..+.+++.+++++++++++++++...+.+.+. ...++..+.. .+..........
T Consensus 688 ~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1146)
T PRK08633 688 AGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLP 767 (1146)
T ss_pred cCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCC
Confidence 999999999999999999999999999999998776665421 1123322211 011110000000
Q ss_pred c----cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH-HHHHHh
Q 008895 182 H----ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAA 256 (549)
Q Consensus 182 ~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l 256 (549)
. ........++++++++|||||||.||+|.++|+++..+.......+ ...++|++++.+|++|.+|+. ..+.++
T Consensus 768 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l 846 (1146)
T PRK08633 768 ARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-NLRNDDVILSSLPFFHSFGLTVTLWLPL 846 (1146)
T ss_pred HHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-CCCCCCEEEEcCcHHHHHhHHHHHHHHH
Confidence 0 0001234678999999999999999999999999998887776666 467789999999999999984 477889
Q ss_pred hhccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCc
Q 008895 257 ALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335 (549)
Q Consensus 257 ~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~ 335 (549)
..|++++..+ .+++..+++.++++++|++.++|++++.+.+.......+++++|.+++||+++++++.+++++.+ +++
T Consensus 847 ~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~ 925 (1146)
T PRK08633 847 LEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIR 925 (1146)
T ss_pred HCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCC
Confidence 9999988866 47899999999999999999999999999887665666789999999999999999999999998 789
Q ss_pred EEcccCccccccceecccCcC--------CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCc
Q 008895 336 LVQAYGLTESTAGVFRTVGPD--------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEP 407 (549)
Q Consensus 336 l~~~yG~tE~~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~ 407 (549)
+++.||+||++.++....... .....+++|+|+||++++|+|++++++++.|+.|||+++|+.++.||++++
T Consensus 926 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~ 1005 (1146)
T PRK08633 926 ILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDP 1005 (1146)
T ss_pred eecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCc
Confidence 999999999987665432211 112457899999999999999889999999999999999999999999999
Q ss_pred cccccccCC---CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCC--CcceEEEEeecCCCCCce
Q 008895 408 EVTSATLLP---DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHR--EVADAAVIPYPDEEAGQM 482 (549)
Q Consensus 408 ~~~~~~~~~---~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~--~v~~~~vv~~~~~~~~~~ 482 (549)
+.+.+.+.+ ++||+|||+|++|+||++++.||.||++|++|++|+|.|||++|.+|| .+.+++|++++++..++.
T Consensus 1006 ~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~ 1085 (1146)
T PRK08633 1006 EKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEK 1085 (1146)
T ss_pred cchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcE
Confidence 998887743 289999999999999999999999999999999999999999999998 567899999999888899
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 483 PMAFVVRQPHSSLNEAEIMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 483 ~~~~v~~~~~~~~~~~~i~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
++++++.. ..+.+++++++++ +++++++|..+++++++|+|++||+||++|++++.
T Consensus 1086 ~~~~v~~~---~~~~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~ 1142 (1146)
T PRK08633 1086 LVVLHTCG---AEDVEELKRAIKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELAL 1142 (1146)
T ss_pred EEEEEecC---ccCHHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHH
Confidence 99988752 3567889998875 69999999999999999999999999999998754
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=529.43 Aligned_cols=453 Identities=29% Similarity=0.420 Sum_probs=389.4
Q ss_pred CCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHH
Q 008895 56 DDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135 (549)
Q Consensus 56 p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~ 135 (549)
++++|++++ ++++||.||.++++++|..|+. +|+|+++++|++++++++|||+++|++++|+++..+.+++.
T Consensus 14 ~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~------~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~ 85 (471)
T PRK07787 14 DIADAVRIG--GRVLSRSDLAGAATAVAERVAG------ARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERR 85 (471)
T ss_pred CCceEEEeC--CcEEEHHHHHHHHHHHHHHhcc------CCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHH
Confidence 889999987 8899999999999999999873 68999999999999999999999999999999999999999
Q ss_pred HHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHH
Q 008895 136 RQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215 (549)
Q Consensus 136 ~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~ 215 (549)
++++++++++++++..... . ......+.... ... . ......+++.++++|||||||.||+|.++|+
T Consensus 86 ~~l~~~~~~~il~~~~~~~--~--~~~~~~~~~~~-----~~~----~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~ 151 (471)
T PRK07787 86 HILADSGAQAWLGPAPDDP--A--GLPHVPVRLHA-----RSW----H-RYPEPDPDAPALIVYTSGTTGPPKGVVLSRR 151 (471)
T ss_pred HHHHhcCCCEEEecCCccc--c--cccceeeeccc-----ccc----c-cCCCCCCCceEEEEECCCCCCCCCEEEEeHH
Confidence 9999999999999764210 0 11111111000 000 0 0112356889999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHH
Q 008895 216 NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294 (549)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~ 294 (549)
++..++......+ ....+++++..+|++|.+|+ ..++.++..|++++....+++..+++.++ +++|+++++|+++..
T Consensus 152 ~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~ 229 (471)
T PRK07787 152 AIAADLDALAEAW-QWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSR 229 (471)
T ss_pred HHHHHHHHHHHhc-CCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHH
Confidence 9998887766666 46778899999999999988 55788999999999988889999999999 999999999999999
Q ss_pred HHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEE
Q 008895 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374 (549)
Q Consensus 295 l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 374 (549)
+++.... ...++++|.+++||+++++++.+++.+.+ +..+++.||+||++...... .......+++|+|++++.++
T Consensus 230 l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~~~~~~~~~vG~~~~g~~~~ 305 (471)
T PRK07787 230 IAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTR--ADGERRPGWVGLPLAGVETR 305 (471)
T ss_pred HHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecC--CCCcccCCcccccCCCcEEE
Confidence 8875432 34578999999999999999999999988 78899999999998654432 22233457899999999999
Q ss_pred EEcCCCCCcCC-CC-CcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEccc-CCeeeeCcEee
Q 008895 375 IVDPETGDSLP-PG-KEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL-KDLIKYKGYQV 451 (549)
Q Consensus 375 i~d~~~~~~~~-~g-~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~-~d~i~~~G~~v 451 (549)
|+|+ ++.+++ .+ ..|||+++|++++.||+++++.+...|..++||+|||+|+++++|.+++.||+ |++++.+|++|
T Consensus 306 i~d~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v 384 (471)
T PRK07787 306 LVDE-DGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRI 384 (471)
T ss_pred EECC-CCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEE
Confidence 9994 467776 34 37999999999999999999999999988999999999999999999999996 88999999999
Q ss_pred ChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcc
Q 008895 452 APAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKI 531 (549)
Q Consensus 452 ~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv 531 (549)
+|.+||++|.+++.|.+++|++.++...++.++++++.. ...+.+++.++++++|+++++|..++++++||+|++||+
T Consensus 385 ~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~--~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi 462 (471)
T PRK07787 385 GAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA--DDVAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKV 462 (471)
T ss_pred CHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC--CCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCCccc
Confidence 999999999999999999999999888888999999873 346788999999999999999999999999999999999
Q ss_pred cHHHHHcc
Q 008895 532 LRMELRKV 539 (549)
Q Consensus 532 ~r~~l~~~ 539 (549)
+|++|+++
T Consensus 463 ~r~~L~~~ 470 (471)
T PRK07787 463 LKKQLLSE 470 (471)
T ss_pred cHHHhccC
Confidence 99999875
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=529.93 Aligned_cols=489 Identities=23% Similarity=0.337 Sum_probs=413.2
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|+.+.|.+.+..+ |+++|+.+. +.++||.||.++++++|..|.+ .|+.+|++|+++++|+.++++++|||++
T Consensus 2 ~~~~~~l~~~a~~~----p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~-~g~~~~~~v~~~~~~~~~~~~~~~a~~~ 74 (503)
T PRK04813 2 MDIIETIEEFAQTQ----PDFPAYDYL--GEKLTYGQLKEDSDALAAFIDS-LKLPDKSPIIVFGHMSPEMLATFLGAVK 74 (503)
T ss_pred chHHHHHHHHHHhC----CCceEEEeC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 57889999999888 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|+++..+.+.+..+++..++++++++..... .......+..+ .+.+..... ..........+++.+++
T Consensus 75 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~i 148 (503)
T PRK04813 75 AGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL--EILGIPVITLD--ELKDIFATG--NPYDFDHAVKGDDNYYI 148 (503)
T ss_pred cCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccc--cccCCcEEehH--Hhhhhhhcc--ccccccccCCCCCcEEE
Confidence 9999999999999999999999999999999876521 11112222211 111111100 00111223456889999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~~~ 274 (549)
+|||||||.||+|.++|+++..........+ .....++++...|++|..++...+.++..|++++..+. .++..++
T Consensus 149 ~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~ 227 (503)
T PRK04813 149 IFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-ALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLF 227 (503)
T ss_pred EECCCCCCCCcEEEeehHHHHHHHHHHHHHc-CCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence 9999999999999999999998887766666 46778899999999999988888899999999988764 5789999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.+.+++++++..+|+++..+..........++++|.++++|+++++.+.+++.+.++++.+++.||+||++........
T Consensus 228 ~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~ 307 (503)
T PRK04813 228 ETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEI 307 (503)
T ss_pred HHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEe
Confidence 99999999999999999988766544445568899999999999999999999999988999999999999765443221
Q ss_pred cC---CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC-C--CeeecCceEEE
Q 008895 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-D--GWMRTGDLCYI 428 (549)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-~--~~~~TGD~~~~ 428 (549)
.. ......++|.+.++++++|+| +++.+++.|+.|||+|+|+.++.||+++++.+...|.. + +||+|||+|++
T Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~ 386 (503)
T PRK04813 308 TDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL 386 (503)
T ss_pred cccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe
Confidence 11 123445799999999999999 77899999999999999999999999999988887643 3 49999999999
Q ss_pred ecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC----CHHHHHHHH
Q 008895 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL----NEAEIMEFV 504 (549)
Q Consensus 429 ~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~----~~~~i~~~l 504 (549)
++|++++.||.+|+++.+|++|++.+||+++..+|+|.+++|++.++...++.+++++++.++... -..++.+++
T Consensus 387 -~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 465 (503)
T PRK04813 387 -EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKEL 465 (503)
T ss_pred -eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998777677888999887654211 124689999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+++++++++|..++++++||+|++||++|++|++++.+
T Consensus 466 ~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 503 (503)
T PRK04813 466 KERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK 503 (503)
T ss_pred HhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence 99999999999999999999999999999999998753
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=548.05 Aligned_cols=488 Identities=20% Similarity=0.258 Sum_probs=389.0
Q ss_pred CCCCHHHHHhhcccCCCCCCCCCcEEEECC---CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHH
Q 008895 36 APISAVDYVSSLRATLPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (549)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~---~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~ 112 (549)
.+.++.+.|.+.++++ |+++|+++.. ..+++||+||.++++++|++|.+ .|+++||+|+++++|++++++++
T Consensus 37 ~~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~Gv~~gd~Vai~~~n~~e~~~~~ 111 (614)
T PRK08180 37 YPRRLTDRLVHWAQEA----PDRVFLAERGADGGWRRLTYAEALERVRAIAQALLD-RGLSAERPLMILSGNSIEHALLA 111 (614)
T ss_pred cCccHHHHHHHHHHHC----CCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHH
Confidence 3479999999999999 9999998641 12689999999999999999998 89999999999999999999999
Q ss_pred HHHHHcCCeEccCCCCCC-----HHHHHHHHhhcCCeEEEEcCcc--HHHHhc---CCCeEEEecC-------Cchhhhh
Q 008895 113 FSLLSLGVIISPANPVNT-----ESEISRQIQLSNPVIAFATSSV--VHKLAK---LKHRTILIDS-------PEFDSMT 175 (549)
Q Consensus 113 la~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~~--~~~~~~---~~~~~~~~~~-------~~~~~~~ 175 (549)
|||+++|++++|++|.++ .+++.+++++++++++|+++.. ...+.. .....+..+. ..+.++.
T Consensus 112 lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 191 (614)
T PRK08180 112 LAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALL 191 (614)
T ss_pred HHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHHHh
Confidence 999999999999999988 7999999999999999998642 222221 1223333321 1233332
Q ss_pred cccCCCc-cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCC-CCCcEEEEecChhhHHHH-HHH
Q 008895 176 MSWNSKH-ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR-VSPAVMLFTMPYFHIYGL-FFC 252 (549)
Q Consensus 176 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~~~~~~~pl~~~~g~-~~~ 252 (549)
....... ........++++++|+|||||||.||+|++||+++.++.......+... ...+++++.+|++|.+|+ ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~ 271 (614)
T PRK08180 192 ATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNL 271 (614)
T ss_pred ccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHH
Confidence 2111000 0111234578999999999999999999999999998887765555321 256899999999999987 566
Q ss_pred HHHhhhccEEEEecC-cC---HHHHHHHHHHhceeeeeecHHHHHHHHhCCCC----CCCCCCCceEEEEecCCCCHHHH
Q 008895 253 FRAAALMETAVVMQR-FD---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST----DGYDLSSLETVACGAAPLGKDTI 324 (549)
Q Consensus 253 ~~~l~~g~~~~~~~~-~~---~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~----~~~~l~~lr~v~~~Ge~l~~~~~ 324 (549)
+.++..|+++++.+. ++ ...+++.++++++|+++++|.++..|++.... ....++++|.+++||+++++++.
T Consensus 272 ~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~ 351 (614)
T PRK08180 272 GIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVW 351 (614)
T ss_pred HHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHH
Confidence 788999999988652 33 35778889999999999999999888764321 22347899999999999999999
Q ss_pred HHHHHh----CC-CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCc
Q 008895 325 MAFASK----FP-KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399 (549)
Q Consensus 325 ~~~~~~----~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~ 399 (549)
+++.+. ++ ++.+++.||+||++.++..... .....+++|+|++|++++++|+ +..|||+|+|+++
T Consensus 352 ~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~--~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v 421 (614)
T PRK08180 352 DRLDRVAEATCGERIRMMTGLGMTETAPSATFTTG--PLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNV 421 (614)
T ss_pred HHHHHHHHhhcCCCceeeeeecccccCCceEeccc--ccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCcc
Confidence 999875 32 3789999999999876654322 2345689999999999999883 3469999999999
Q ss_pred ccccCCCccccccccCCCCeeecCceEEE----ecCCeEEEEcccCCeeee-CcEeeC--hHHHHHHHHcCCCcceEEEE
Q 008895 400 MKGYVGEPEVTSATLLPDGWMRTGDLCYI----DEDGFLFIVDRLKDLIKY-KGYQVA--PAELEHLLLSHREVADAAVI 472 (549)
Q Consensus 400 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~----~~~g~~~~~GR~~d~i~~-~G~~v~--~~~IE~~l~~~~~v~~~~vv 472 (549)
+.||+++|+.+...|..+|||+|||+|++ |++|++++.||++|++++ +|++|+ +.|+|.++.+||.|.+++|+
T Consensus 422 ~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~ 501 (614)
T PRK08180 422 TPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVIT 501 (614)
T ss_pred chhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEE
Confidence 99999999999999978999999999999 468999999999999986 798776 77888999999999999999
Q ss_pred eecCCCCCceeEEEEEeCCCC---------------CCCHHHHHHHHHhcCCCCC--------cccEEEEeCccCCCC--
Q 008895 473 PYPDEEAGQMPMAFVVRQPHS---------------SLNEAEIMEFVARQVSPYK--------KIRRVAFINAIPKSA-- 527 (549)
Q Consensus 473 ~~~~~~~~~~~~~~v~~~~~~---------------~~~~~~i~~~l~~~l~~~~--------~p~~i~~v~~lP~t~-- 527 (549)
+.+++ .+.++|++.++. ..+.+++++++++.|..++ +|+.+++++++|+|+
T Consensus 502 g~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~g 577 (614)
T PRK08180 502 GHDRD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAG 577 (614)
T ss_pred cCCCC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccC
Confidence 88764 567888876431 1244678888888777666 899999999999865
Q ss_pred ----CCcccHHHHHcccCc
Q 008895 528 ----AGKILRMELRKVAVP 542 (549)
Q Consensus 528 ----~GKv~r~~l~~~~~~ 542 (549)
+||+.|+++.+.|++
T Consensus 578 k~t~~~~~~R~~~~~~y~~ 596 (614)
T PRK08180 578 EITDKGYINQRAVLARRAA 596 (614)
T ss_pred ccCccccccHHHHHHHhHH
Confidence 558888888877643
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=536.63 Aligned_cols=497 Identities=25% Similarity=0.386 Sum_probs=400.8
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|....+...+..+ |+++|+.+. +.++||.||.++++++|..|.+ .|+++||+|+++++|+.+++++++||++
T Consensus 20 ~~~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~~ 92 (567)
T PLN02479 20 LTPLWFLERAAVVH----PTRKSVVHG--SVRYTWAQTYQRCRRLASALAK-RSIGPGSTVAVIAPNIPAMYEAHFGVPM 92 (567)
T ss_pred cCHHHHHHHHHhhC----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 67888888888888 999999987 6799999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc------------CCC-eEEEecCC---------------
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK------------LKH-RTILIDSP--------------- 169 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~------------~~~-~~~~~~~~--------------- 169 (549)
+|++++|+++..+.+++.++++.++++++++++...+...+ ... .++.+...
T Consensus 93 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (567)
T PLN02479 93 AGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGA 172 (567)
T ss_pred CCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCc
Confidence 99999999999999999999999999999998876543221 011 12222211
Q ss_pred -chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHH
Q 008895 170 -EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248 (549)
Q Consensus 170 -~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g 248 (549)
.+.++....... .........++.++++|||||||.||+|.++|+++..........+ ....+++++..+|++|.++
T Consensus 173 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~~ 250 (567)
T PLN02479 173 IEYEKFLETGDPE-FAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-GMNEGAVYLWTLPMFHCNG 250 (567)
T ss_pred ccHHHHHhccccc-cccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-CCCCCCEEEEecchhhhhh
Confidence 122221111100 0001112234677899999999999999999999876655444444 4567889999999999999
Q ss_pred HHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCC-CCCCCceEEEEecCCCCHHHHHHH
Q 008895 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG-YDLSSLETVACGAAPLGKDTIMAF 327 (549)
Q Consensus 249 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~-~~l~~lr~v~~~Ge~l~~~~~~~~ 327 (549)
+...+.....++..+....+++..+++.++++++|+++++|+++..+.+...... ..+++++.++++|+++++.+.+++
T Consensus 251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~ 330 (567)
T PLN02479 251 WCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAM 330 (567)
T ss_pred HHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHH
Confidence 8555444334444555567899999999999999999999999999887643322 257889999999999999999999
Q ss_pred HHhCCCCcEEcccCccccccceecccCcC---------CCCCCCccccccCCcE-EEEEcCCCCCcCCCC--CcceEEEe
Q 008895 328 ASKFPKVVLVQAYGLTESTAGVFRTVGPD---------ECRRWGSTGRLSAGLE-AKIVDPETGDSLPPG--KEGELSIR 395 (549)
Q Consensus 328 ~~~~~~~~l~~~yG~tE~~~~~~~~~~~~---------~~~~~~~~G~~~~~~~-~~i~d~~~~~~~~~g--~~Gel~v~ 395 (549)
.+. +.++++.||+||++..+....... ......+.|.+.++.. ++|+|++++.+++.+ +.|||+++
T Consensus 331 ~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~ 408 (567)
T PLN02479 331 SEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMR 408 (567)
T ss_pred Hhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEe
Confidence 875 789999999999865433221100 0011235677888876 889987778888754 67999999
Q ss_pred cCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeec
Q 008895 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475 (549)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~ 475 (549)
|++++.|||++++.+...| .+|||+|||+|+++++|++++.||.+|+|+.+|++|+|.+||.+|.++|.|.+++|++.+
T Consensus 409 g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~ 487 (567)
T PLN02479 409 GNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARP 487 (567)
T ss_pred ccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEecc
Confidence 9999999999999999988 589999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEEeCCCCC-----CCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCCCc
Q 008895 476 DEEAGQMPMAFVVRQPHSS-----LNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSSC 547 (549)
Q Consensus 476 ~~~~~~~~~~~v~~~~~~~-----~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~~ 547 (549)
+...++.+++++++..... ...++|.++++++|+.++.|+.+.+ ++||+|++||++|+.|++.+.+.+.++
T Consensus 488 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~~~~~~~ 563 (567)
T PLN02479 488 DERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAKEMGPVK 563 (567)
T ss_pred chhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHHHHHHHHhhCCcc
Confidence 8777889999998775432 2357899999999999999998776 789999999999999999887766544
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-64 Score=530.45 Aligned_cols=487 Identities=29% Similarity=0.450 Sum_probs=405.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.+.++.+ |+++|+.+. ++.+||.||.++++++|++|.+ .|+.+|++|+++++|+.+++++++||++
T Consensus 21 ~~~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~ 93 (541)
T TIGR03205 21 GTLPDLLSKAAADY----GPRPALEFR--DRPITYTELEAMAETAAAALLR-AGYGKDASVALYLGNTPDHPINFFGALK 93 (541)
T ss_pred CCHHHHHHHHHHHc----CCCceEEEC--CcEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 58999999999999 999999886 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCcc--HHHHhc-----CCCeEEEecCCc-------------------h
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV--VHKLAK-----LKHRTILIDSPE-------------------F 171 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--~~~~~~-----~~~~~~~~~~~~-------------------~ 171 (549)
+|++++|++|..+.+++.++++.++++.+++++.. .....+ .....+.++... +
T Consensus 94 ~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (541)
T TIGR03205 94 AGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTY 173 (541)
T ss_pred cCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccH
Confidence 99999999999999999999999999999998632 111111 011122222111 1
Q ss_pred hhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCC-----CCCCCcEEEEecChhhH
Q 008895 172 DSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-----KRVSPAVMLFTMPYFHI 246 (549)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~pl~~~ 246 (549)
.++.... ..........+++.++++|||||||.||+|.++|+++....... ..+. .....+++++..|++|.
T Consensus 174 ~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~ 250 (541)
T TIGR03205 174 ADFVKGA--AAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHI 250 (541)
T ss_pred HHHHhcC--CCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHH
Confidence 1111100 00111123456889999999999999999999999987655422 1110 12234688999999999
Q ss_pred HHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHH
Q 008895 247 YGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325 (549)
Q Consensus 247 ~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~ 325 (549)
+++ ..++.++..|++++....+++..+++.|.++++|++.++|+++..+++........++++|.+++||+++++++.+
T Consensus 251 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~ 330 (541)
T TIGR03205 251 YALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVAN 330 (541)
T ss_pred HHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHH
Confidence 888 4567788899998888888999999999999999999999999998876544445678999999999999999999
Q ss_pred HHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEc-CCCCCcCCCCCcceEEEecCCcccccC
Q 008895 326 AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVD-PETGDSLPPGKEGELSIRGPTIMKGYV 404 (549)
Q Consensus 326 ~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~g~~Gel~v~g~~~~~gy~ 404 (549)
++.+.+ +..+++.||+||++..+..... ......+++|.|++++.++|++ .+++++++.|+.|||+++|++++.||+
T Consensus 331 ~~~~~~-~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~ 408 (541)
T TIGR03205 331 FFERKT-GLKLKSGWGMTETCSPGTGHPP-EGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYW 408 (541)
T ss_pred HHHHHh-CCCeecccccccCCcccccCCC-CCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCcccccc
Confidence 998887 7899999999999876654322 1223457899999999988864 366788999999999999999999999
Q ss_pred CCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeE
Q 008895 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484 (549)
Q Consensus 405 ~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~ 484 (549)
++++.+.+.| .++||+|||+++++++|++++.||.||++|++|++|+|.+||+++.++++|.+++|++++++..++.++
T Consensus 409 ~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~ 487 (541)
T TIGR03205 409 NRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAK 487 (541)
T ss_pred CChhhhHhhh-ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEE
Confidence 9999988887 478999999999999999999999999999999999999999999999999999999999887788899
Q ss_pred EEEEeCCCC-CCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHH
Q 008895 485 AFVVRQPHS-SLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELR 537 (549)
Q Consensus 485 ~~v~~~~~~-~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~ 537 (549)
++++++++. ..+.+++.++++++|+++++|..|+++++||+|++||++|++|+
T Consensus 488 ~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 488 AFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred EEEEECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 999887654 35788999999999999999999999999999999999999875
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=549.60 Aligned_cols=493 Identities=24% Similarity=0.281 Sum_probs=385.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEEC----------CCC-----------ceecHHHHHHHHHHHHHHhHHhcCCCCCC
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINS----------VTG-----------LRVSFSEFTRRTNSLASYLQNVTRLSKND 96 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~----------~~~-----------~~~Ty~el~~~a~~~A~~L~~~~g~~~g~ 96 (549)
.|+.++|.+.++++ |+++|+..- .++ ..+||+||.++++++|++|.+ +|+++||
T Consensus 58 ~t~~~l~~~~~~~~----pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-lG~~~gd 132 (696)
T PLN02387 58 TTLAALFEQSCKKY----SDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA-LGHNKEE 132 (696)
T ss_pred CCHHHHHHHHHHHC----CCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence 58999999999999 999999320 112 238999999999999999998 8999999
Q ss_pred EEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CC-eEEEecCCc
Q 008895 97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSPE 170 (549)
Q Consensus 97 ~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~~ 170 (549)
+|+|+++|+++|++++|||+++|++++|+++.++.+++.++|++++++++|++.+....+... .. .++.++...
T Consensus 133 ~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~ 212 (696)
T PLN02387 133 RVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEG 212 (696)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999998766554432 11 244444211
Q ss_pred -----------------hhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCC
Q 008895 171 -----------------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233 (549)
Q Consensus 171 -----------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~ 233 (549)
+.++....... ........++++++|+|||||||.||||++||+++++.+...........+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~ 291 (696)
T PLN02387 213 VDSDSSLSGSSNWTVSSFSEVEKLGKEN-PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGK 291 (696)
T ss_pred chhhhhhhccCCcEEEEHHHHHHhhccC-CCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCC
Confidence 12211111100 111223467899999999999999999999999999888776555434678
Q ss_pred CcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcC--------HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCC---
Q 008895 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD--------LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--- 302 (549)
Q Consensus 234 ~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~--------~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~--- 302 (549)
+|++++.+|++|.+++...+.++..|+++....+.. ...++..+++++||+++++|.++..+.+.....
T Consensus 292 ~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~ 371 (696)
T PLN02387 292 NDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDA 371 (696)
T ss_pred CCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhc
Confidence 899999999999999976666677777766543211 134567899999999999999998876431100
Q ss_pred ----------------------------CC---------------CC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEc
Q 008895 303 ----------------------------GY---------------DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (549)
Q Consensus 303 ----------------------------~~---------------~l-~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~ 338 (549)
.. .+ +++|.+++||+++++++.+.+...+ ++.+++
T Consensus 372 ~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~ 450 (696)
T PLN02387 372 KGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQ 450 (696)
T ss_pred ccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeE
Confidence 00 01 5899999999999999988888777 789999
Q ss_pred ccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCC-CcC--CCCCcceEEEecCCcccccCCCccccccccC
Q 008895 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG-DSL--PPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415 (549)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~-~~~--~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~ 415 (549)
.||+||++..++.... .....+++|+|+|+++++|+|.+++ ... .++..|||+|+||+++.|||++|+.|.+.|.
T Consensus 451 ~YG~TEt~~~~~~~~~--~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~ 528 (696)
T PLN02387 451 GYGLTETCAGATFSEW--DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYK 528 (696)
T ss_pred eechhhcccceeecCc--ccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhc
Confidence 9999999876654322 2335689999999999999994433 322 2345799999999999999999999999884
Q ss_pred --CCC--eeecCceEEEecCCeEEEEcccCCeeee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeC
Q 008895 416 --PDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQ 490 (549)
Q Consensus 416 --~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~ 490 (549)
.+| ||+|||+|++|+||+++++||+||+||+ +|++|+|.+||++|.+||.|.+++|++.+. ...++++|++.
T Consensus 529 ~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~ 605 (696)
T PLN02387 529 VDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF---HSYCVALVVPS 605 (696)
T ss_pred cccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEEeC
Confidence 345 9999999999999999999999999998 699999999999999999999999997653 34678888875
Q ss_pred CCC--------C---CC----------HHHHHHHH-----HhcCCCCCcccEEEEeCccC------CCCCCcccHHHHHc
Q 008895 491 PHS--------S---LN----------EAEIMEFV-----ARQVSPYKKIRRVAFINAIP------KSAAGKILRMELRK 538 (549)
Q Consensus 491 ~~~--------~---~~----------~~~i~~~l-----~~~l~~~~~p~~i~~v~~lP------~t~~GKv~r~~l~~ 538 (549)
... . .+ .+++.+.+ +.+|..+++|+.|.++.+-. +|++.|+.|+.+++
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~ 685 (696)
T PLN02387 606 QQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRK 685 (696)
T ss_pred HHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHH
Confidence 321 0 01 12233333 33699999999998886533 58888999999999
Q ss_pred ccCc
Q 008895 539 VAVP 542 (549)
Q Consensus 539 ~~~~ 542 (549)
.|.+
T Consensus 686 ~y~~ 689 (696)
T PLN02387 686 KFKD 689 (696)
T ss_pred HHHH
Confidence 8754
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-65 Score=632.45 Aligned_cols=485 Identities=22% Similarity=0.336 Sum_probs=422.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++|++|+++++++.++++++||+++
T Consensus 1131 ~~l~~~~~~~a~~~----p~~~Al~~~--~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iv~~lailk 1203 (4334)
T PRK05691 1131 AWLPELLNEQARQT----PERIALVWD--GGSLDYAELHAQANRLAHYLRD-KGVGPDVCVAIAAERSPQLLVGLLAILK 1203 (4334)
T ss_pred CCHHHHHHHHHHhC----CCCeEEEEC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 57999999999999 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-CCeEEEecCCchhhhhcccCCCccccccccCCCCEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
+|++++|++|.++.+++.+++++++++++|++......+... ....+.++....... . . ........++++++
T Consensus 1204 aG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~~~~~~~~~~~~a~ 1277 (4334)
T PRK05691 1204 AGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSLHLDSW----P-S-QAPGLHLHGDNLAY 1277 (4334)
T ss_pred hCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeecccccccc----C-C-CCCCCCCCCCCeEE
Confidence 999999999999999999999999999999998766554432 122232222111110 0 0 11112345789999
Q ss_pred EEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEec---CcCHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ---RFDLKMM 273 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~---~~~~~~~ 273 (549)
++|||||||.||||.++|+++.+.+.+....+ ...++++++...|+.|..+++.++.++..|+++++.+ ..++..+
T Consensus 1278 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l 1356 (4334)
T PRK05691 1278 VIYTSGSTGQPKGVGNTHAALAERLQWMQATY-ALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRI 1356 (4334)
T ss_pred EEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHH
Confidence 99999999999999999999999888777766 5778899999999999999999999999999999975 3688999
Q ss_pred HHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 274 ~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
++.++++++|+++++|+++..+..... ...++++|.+++|||++++++.++|.+.++++.+++.||+||++..+....
T Consensus 1357 ~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 1434 (4334)
T PRK05691 1357 AELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQ 1434 (4334)
T ss_pred HHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeee
Confidence 999999999999999999999986542 235789999999999999999999999998899999999999987665432
Q ss_pred CcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC-------CCeeecCceE
Q 008895 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-------DGWMRTGDLC 426 (549)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-------~~~~~TGD~~ 426 (549)
.........++|+|++++.++|+| +.+++++.|..|||+|+|+++++||+++|+.|.+.|.. .+||+|||+|
T Consensus 1435 ~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~ 1513 (4334)
T PRK05691 1435 CQAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRA 1513 (4334)
T ss_pred cccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceE
Confidence 222233456899999999999999 67899999999999999999999999999999998854 2499999999
Q ss_pred EEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh
Q 008895 427 YIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR 506 (549)
Q Consensus 427 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~ 506 (549)
++++||.++++||+|++||++|++|+|.|||++|.++|+|.+++|++..+. .++.++++++.......+.+++++++++
T Consensus 1514 ~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~~~~~l~~~l~~ 1592 (4334)
T PRK05691 1514 RWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEAEAERLKAALAA 1592 (4334)
T ss_pred EECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976554 4578899998876666778899999999
Q ss_pred cCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 507 QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 507 ~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
+|+.|++|..++++++||+|++|||||++|++..
T Consensus 1593 ~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~~ 1626 (4334)
T PRK05691 1593 ELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEPV 1626 (4334)
T ss_pred hCccccCCcEEEEccccCCCCCCCcChhhcCccc
Confidence 9999999999999999999999999999998754
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-65 Score=521.61 Aligned_cols=429 Identities=20% Similarity=0.256 Sum_probs=360.4
Q ss_pred ceecHHHHHHHHHHHHHHhHHhcCC-CCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEE
Q 008895 68 LRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (549)
Q Consensus 68 ~~~Ty~el~~~a~~~A~~L~~~~g~-~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 146 (549)
.-+.|+||.++++++|++|++ .|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++
T Consensus 18 ~~~~~~el~~~~~~~a~~L~~-~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~ 96 (452)
T PRK07445 18 IGYNSQRFYQLAQQLYLQLQQ-LATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQI 96 (452)
T ss_pred eecChHHHHHHHHHHHHHHHH-hcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEE
Confidence 457899999999999999999 887 579999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhc
Q 008895 147 FATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA 226 (549)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~ 226 (549)
+++....... .. . .. .......+++.++++|||||||.||+|+++|+++.++......
T Consensus 97 i~~~~~~~~~---------~~-----~----~~----~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~ 154 (452)
T PRK07445 97 WGLDQLKLSH---------PP-----P----LP----SQGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQR 154 (452)
T ss_pred EecCcccccc---------CC-----C----CC----ccccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHH
Confidence 9876542210 00 0 00 0011235678999999999999999999999999887776665
Q ss_pred cCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCC
Q 008895 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306 (549)
Q Consensus 227 ~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l 306 (549)
.+ ...+ ++.++.+|++|.+|+...+.++..|+++++.+............++++++++++|+++..+++.. ...+
T Consensus 155 ~~-~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l 229 (452)
T PRK07445 155 YF-QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWL 229 (452)
T ss_pred Hh-cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhh
Confidence 55 2333 45788999999999988889999999998876422222234445788999999999999988632 2347
Q ss_pred CCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCC
Q 008895 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP 386 (549)
Q Consensus 307 ~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~ 386 (549)
+++|.+++||+++++++.+++.+. ++.+++.||+||++..++...........+++|+|+|+++++|+ .
T Consensus 230 ~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~ 298 (452)
T PRK07445 230 AQFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------A 298 (452)
T ss_pred hcceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------C
Confidence 899999999999999999988763 78999999999997654432221112245689999999999997 4
Q ss_pred CCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCc
Q 008895 387 GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREV 466 (549)
Q Consensus 387 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v 466 (549)
|+.|||+|+|+.++.||++++. ..++||+|||+|++|+||++++.||.||+||.+|++|+|.+||++|.+||+|
T Consensus 299 g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V 372 (452)
T PRK07445 299 NQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLV 372 (452)
T ss_pred CCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCc
Confidence 5689999999999999998542 2478999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 467 ADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 467 ~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
.+|+|++.+++..++.++++++..+. ..+.++++++++++|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 373 ~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 447 (452)
T PRK07445 373 QDVCVLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQ 447 (452)
T ss_pred ceEEEEeccCcCCCcEEEEEEEeCCC-CCCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHH
Confidence 99999999998888999999988654 4578899999999999999999999999999999999999999998754
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=634.94 Aligned_cols=484 Identities=20% Similarity=0.270 Sum_probs=416.0
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.+++++|.++++++ |+++|++++ +..+||+||.++++++|++|.+ .|+++|++|+|++++++++++++||+++
T Consensus 3720 ~~~~~~~~~~~~~~----p~~~Av~~~--~~~~tY~eL~~~~~~la~~L~~-~gv~~~~~V~v~~~~s~~~~v~~lavlk 3792 (4334)
T PRK05691 3720 QSYVRLFEAQVAAH----PQRIAASCL--DQQWSYAELNRAANRLGHALRA-AGVGVDQPVALLAERGLDLLGMIVGSFK 3792 (4334)
T ss_pred cCHHHHHHHHHHhC----CCceEEEcC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 58999999999999 999999998 7899999999999999999998 9999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-------CCe-EEEecCCchhhhhcccCCCcccccccc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHR-TILIDSPEFDSMTMSWNSKHELDRAKV 189 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (549)
+|++++|+||.++.+++.+++++++++++|++.......... ... ++..+. ...... .........
T Consensus 3793 aG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~ 3866 (4334)
T PRK05691 3793 AGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE-----VQAGEV-ASHNPGIYS 3866 (4334)
T ss_pred hCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc-----cccccc-cccCCCCCC
Confidence 999999999999999999999999999999998754432211 111 111111 100000 001122235
Q ss_pred CCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC--
Q 008895 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-- 267 (549)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~-- 267 (549)
.+++.||++|||||||.||||+++|+++.+.+......+ ...+.++++...++.+..+++..+.++..|+++++.+.
T Consensus 3867 ~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~ 3945 (4334)
T PRK05691 3867 GPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-ALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAI 3945 (4334)
T ss_pred CCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-CCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccc
Confidence 678999999999999999999999999999998877777 57889999999999999999999999999999998764
Q ss_pred -cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccc
Q 008895 268 -FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346 (549)
Q Consensus 268 -~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~ 346 (549)
.++..+++.++++++|++.++|+++..++... ...+++||.+++|||++++++.+.|.+.++++++++.||+||++
T Consensus 3946 ~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t 4022 (4334)
T PRK05691 3946 AHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECS 4022 (4334)
T ss_pred cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccce
Confidence 57899999999999999999999999887543 23478999999999999999999999998899999999999998
Q ss_pred cceecccCcCCC--CCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC-------C
Q 008895 347 AGVFRTVGPDEC--RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-------D 417 (549)
Q Consensus 347 ~~~~~~~~~~~~--~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-------~ 417 (549)
..+......... ....++|+|++|++++|+| +.++++|.|..|||+|+|+.+++||+++|+.|.++|.+ +
T Consensus 4023 ~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~ 4101 (4334)
T PRK05691 4023 DDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGE 4101 (4334)
T ss_pred eEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCc
Confidence 876543322211 2234799999999999999 78999999999999999999999999999999999864 3
Q ss_pred CeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC--
Q 008895 418 GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL-- 495 (549)
Q Consensus 418 ~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~-- 495 (549)
+||+|||+|++++||.++++||+|++||++|++|++.|||++|.++|+|.+++|+... ...++.+++|++.......
T Consensus 4102 ~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~-~~~~~~l~a~~~~~~~~~~~~ 4180 (4334)
T PRK05691 4102 RLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQE-GVNGKHLVGYLVPHQTVLAQG 4180 (4334)
T ss_pred eeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEec-CCCCcEEEEEEeCCcccccch
Confidence 6999999999999999999999999999999999999999999999999999887654 3456788999987654322
Q ss_pred -CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 496 -NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 496 -~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
..++++++|+++||.||+|..++.+++||+|++|||||++|++..
T Consensus 4181 ~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~~ 4226 (4334)
T PRK05691 4181 ALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKALPALD 4226 (4334)
T ss_pred HHHHHHHHHHHhhCChhhcCcceeecccCCCCCCCcccHhhcCCCc
Confidence 246799999999999999999999999999999999999998864
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=523.25 Aligned_cols=478 Identities=23% Similarity=0.360 Sum_probs=403.8
Q ss_pred ccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCC
Q 008895 48 RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127 (549)
Q Consensus 48 ~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~ 127 (549)
++.+ |+++|+++. +..+||.||.++++++|++|.+ .|+++|++|+++++|+.+++++++||+++|++++|+++
T Consensus 15 ~~~~----p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~~ 87 (508)
T TIGR02262 15 VEGR----GGKTAFIDD--ISSLSYGELEAQVRRLGAALRR-LGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNT 87 (508)
T ss_pred hccc----CCceEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeeccC
Confidence 4567 999999987 7899999999999999999998 89999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CC-eEEEecC-----CchhhhhcccCCCccccccccCCCCEEE
Q 008895 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDS-----PEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
.++.+++.++++.+++++++++......+... .. ..+..+. ..+.+....... ........++++++
T Consensus 88 ~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~ 165 (508)
T TIGR02262 88 LLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATESE--QFKPAATQADDPAF 165 (508)
T ss_pred CCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcCCC--ccCCCCCCCCCcEE
Confidence 99999999999999999999998766544321 11 1222221 112222211110 11122345688999
Q ss_pred EEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEec-CcCHHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMML 274 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~-~~~~~~~~ 274 (549)
++|||||||.||+|.++|+++................+++++..+|++|.+++ ..++.++..|++.++.+ .+++..++
T Consensus 166 i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 245 (508)
T TIGR02262 166 WLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVF 245 (508)
T ss_pred EEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHH
Confidence 99999999999999999999988776532222256788999999999999888 45667788899888865 36899999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.|+++++|+++++|+++..++...........++|.+++||+++++++.+.|.+.+ ++++++.||+||++..+....
T Consensus 246 ~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~- 323 (508)
T TIGR02262 246 DRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNL- 323 (508)
T ss_pred HHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCC-
Confidence 999999999999999999888766543344567899999999999999999999998 789999999999987655422
Q ss_pred cCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeE
Q 008895 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434 (549)
Q Consensus 355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~ 434 (549)
......+++|.|++++.++++| +++.+++.|+.|||+++|++++.||+++++.+...| .++||+|||+++++++|.+
T Consensus 324 -~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~ 400 (508)
T TIGR02262 324 -PGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSY 400 (508)
T ss_pred -ccCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccE
Confidence 1223457899999999999999 889999999999999999999999999999988877 5799999999999999999
Q ss_pred EEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCC---CCHHHHHHHHHhcCCCC
Q 008895 435 FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS---LNEAEIMEFVARQVSPY 511 (549)
Q Consensus 435 ~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~---~~~~~i~~~l~~~l~~~ 511 (549)
++.||.+|+++++|.+|++.+||++|.++++|.++++++.++....+.+.++++..+... ...+++.++++++|+++
T Consensus 401 ~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~ 480 (508)
T TIGR02262 401 TYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPY 480 (508)
T ss_pred EEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999887777788889988765432 34688999999999999
Q ss_pred CcccEEEEeCccCCCCCCcccHHHHHcc
Q 008895 512 KKIRRVAFINAIPKSAAGKILRMELRKV 539 (549)
Q Consensus 512 ~~p~~i~~v~~lP~t~~GKv~r~~l~~~ 539 (549)
+.|..++++++||+|++||++|++|++|
T Consensus 481 ~~p~~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 481 KYPRWIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred CCCceEEEecCCCCCCCCcEehhhccCC
Confidence 9999999999999999999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=527.04 Aligned_cols=494 Identities=31% Similarity=0.489 Sum_probs=411.3
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|...++++ |+++|+++. ++.+||.||.++++++|.+|.++.|+++|++|+++++|+.++++++|||++
T Consensus 23 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 96 (560)
T PRK08974 23 QSLVDMFEQAVARY----ADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILR 96 (560)
T ss_pred ccHHHHHHHHHHhC----CCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 47999999999988 999999987 789999999999999999998437999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----CCCeEEEecC--Cc---------------------
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDS--PE--------------------- 170 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~--~~--------------------- 170 (549)
+|++++|++|..+.+.+.++++.++++.+++++...+.+.+ .....+.... ..
T Consensus 97 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (560)
T PRK08974 97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVP 176 (560)
T ss_pred cCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccc
Confidence 99999999999999999999999999999998765443322 1111111100 00
Q ss_pred ---------hhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCC--CCCCCcEEEE
Q 008895 171 ---------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP--KRVSPAVMLF 239 (549)
Q Consensus 171 ---------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~ 239 (549)
+.+...... ..........++++++++|||||||.||+|.++|.++..++......+. .....+.++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (560)
T PRK08974 177 KYHLPDAISFRSALHKGR-RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVT 255 (560)
T ss_pred cccCCCcccHHHHhhccC-CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEE
Confidence 000000000 0001112245688999999999999999999999999877654433321 1344567888
Q ss_pred ecChhhHHHH-HHHHHHhhhccEEEEec-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecC
Q 008895 240 TMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAA 317 (549)
Q Consensus 240 ~~pl~~~~g~-~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge 317 (549)
.+|++|.+++ ...+.++..|++.++.. ..++..+++.+.++++|+++++|+++..+..........++++|.+++||+
T Consensus 256 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~ 335 (560)
T PRK08974 256 ALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGM 335 (560)
T ss_pred eCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCc
Confidence 9999999887 44566777888766653 567899999999999999999999999998876555566789999999999
Q ss_pred CCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecC
Q 008895 318 PLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~ 397 (549)
++++.+.++|++.+ ++.+++.||+||++.++..+... .....+++|.|++++.++|+| +++..++.|+.|||+++|+
T Consensus 336 ~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~ 412 (560)
T PRK08974 336 AVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYD-LDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGP 412 (560)
T ss_pred cCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCC-CcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEecC
Confidence 99999999999987 78999999999998776654322 223457899999999999999 5688999999999999999
Q ss_pred CcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCC
Q 008895 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDE 477 (549)
Q Consensus 398 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~ 477 (549)
.++.||+++++.+...| .+|||+|||+++++++|.+++.||.+|+++++|.+|+|.+||++|.++|+|.+++|++.++.
T Consensus 413 ~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~ 491 (560)
T PRK08974 413 QVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSE 491 (560)
T ss_pred CcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecC
Confidence 99999999999988877 68999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 478 EAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 478 ~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
..++.++++++..+ ...+.+++++++.++|+.++.|..+.++++||+|++||++|++|++...++
T Consensus 492 ~~g~~~~~~v~~~~-~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 556 (560)
T PRK08974 492 VSGEAVKIFVVKKD-PSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAK 556 (560)
T ss_pred CcceEEEEEEECCC-CCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence 88888888877554 345678999999999999999999999999999999999999999987654
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=525.18 Aligned_cols=491 Identities=25% Similarity=0.328 Sum_probs=405.8
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|+.+++.+.++++ |+++|+.+. ++.+||.||.++++++|+.|.+ .|+++|++|+++++|++++++++|||++
T Consensus 3 ~~l~~~~~~~a~~~----p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~-~g~~~~~~v~v~~~n~~~~~~~~~a~~~ 75 (533)
T PRK07798 3 WNIADLFEAVADAV----PDRVALVCG--DRRLTYAELEERANRLAHYLIA-QGLGPGDHVGIYARNRIEYVEAMLGAFK 75 (533)
T ss_pred ccHHHHHHHHHHhC----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 68999999999999 999999997 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CC-eEEEecCC----------chhhhhcccCCC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP----------EFDSMTMSWNSK 181 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~----------~~~~~~~~~~~~ 181 (549)
+|++++|+++.++.+++.++++++++++++++......+.+. .. .++.++.. .+.+.......
T Consensus 76 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (533)
T PRK07798 76 ARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSP- 154 (533)
T ss_pred cCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCC-
Confidence 999999999999999999999999999999998765554432 11 23333321 22222221111
Q ss_pred ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--------------CCCCCCcEEEEecChhhHH
Q 008895 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--------------PKRVSPAVMLFTMPYFHIY 247 (549)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~pl~~~~ 247 (549)
..... ....+.++++|||||||.||+|+++|+++..........+ .....+++++..+|++|.+
T Consensus 155 -~~~~~-~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 232 (533)
T PRK07798 155 -ERDFG-ERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGA 232 (533)
T ss_pred -cCCCC-CCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhh
Confidence 11111 1223457899999999999999999999876554322211 0014568899999999999
Q ss_pred HHHHHHHHhhhccEEEEec--CcCHHHHHHHHHHhceeeeeecHHHHH-HHHhCCC-CCCCCCCCceEEEEecCCCCHHH
Q 008895 248 GLFFCFRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVV-AMSKGGS-TDGYDLSSLETVACGAAPLGKDT 323 (549)
Q Consensus 248 g~~~~~~~l~~g~~~~~~~--~~~~~~~~~~l~~~~~t~l~~~P~~l~-~l~~~~~-~~~~~l~~lr~v~~~Ge~l~~~~ 323 (549)
+++..+.++..|+++++.+ .+++..+++.++++++|.++++|..+. .+..... .....++++|.+++||+++++++
T Consensus 233 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~ 312 (533)
T PRK07798 233 GQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSV 312 (533)
T ss_pred hHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHH
Confidence 9998999999999999998 789999999999999999999987553 3333322 33456789999999999999999
Q ss_pred HHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCc--ceEEEecCCccc
Q 008895 324 IMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE--GELSIRGPTIMK 401 (549)
Q Consensus 324 ~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~ 401 (549)
.+++.+.+++..+++.||+||++.+...... ......+. +.+.++..++|+| +++++++.|+. |+++ +++.++.
T Consensus 313 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~g~-~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~ 388 (533)
T PRK07798 313 KEALLELLPNVVLTDSIGSSETGFGGSGTVA-KGAVHTGG-PRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPL 388 (533)
T ss_pred HHHHHHHcCCCeEEeeecccccccccccCCC-CCCccCCC-CccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccc
Confidence 9999999988899999999999765543211 11111111 3778999999999 56778888887 6665 5567999
Q ss_pred ccCCCccccccccCC---CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCC
Q 008895 402 GYVGEPEVTSATLLP---DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEE 478 (549)
Q Consensus 402 gy~~~~~~~~~~~~~---~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~ 478 (549)
||+++++.+...|.. ++||+|||++++|++|++++.||.||+++.+|++|++.+||++|.++|.|.+++|++.++..
T Consensus 389 gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~ 468 (533)
T PRK07798 389 GYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDER 468 (533)
T ss_pred cccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcc
Confidence 999999988887753 35999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 479 AGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 479 ~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
.++.+.+++++.++...+.++++++++++|+.+++|..++++++||+|++||++|+.|++++.+
T Consensus 469 ~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 469 WGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred cCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhcc
Confidence 7888999998887666788999999999999999999999999999999999999999999865
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=554.39 Aligned_cols=485 Identities=17% Similarity=0.183 Sum_probs=387.1
Q ss_pred CCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHH
Q 008895 35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (549)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la 114 (549)
+..+++.++|.++++++ |+++|+++. ++++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++||
T Consensus 444 ~~~~sl~~ll~~~a~~~----pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~-~Gv~~Gd~VaI~~~n~~e~v~a~lA 516 (994)
T PRK07868 444 HTRISLGRIIAEQARDA----PKGEFLLFD--GRVHTYEAVNRRINNVVRGLIA-VGVRQGDRVGVLMETRPSALVAIAA 516 (994)
T ss_pred CCCccHHHHHHHHHHHC----CCCeEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 34589999999999999 999999987 7899999999999999999998 8999999999999999999999999
Q ss_pred HHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCc--------hhhhhccc---CCCcc
Q 008895 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPE--------FDSMTMSW---NSKHE 183 (549)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~ 183 (549)
|+++|++++|++|. .++.++++.++++++|++....+.+......++.++... ........ .....
T Consensus 517 ~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (994)
T PRK07868 517 LSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVE 593 (994)
T ss_pred HHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccccCCcchhhhhhhhcCccccc
Confidence 99999999999985 578999999999999999877766554444455443210 00000000 00000
Q ss_pred cc----ccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHH-HHhhh
Q 008895 184 LD----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF-RAAAL 258 (549)
Q Consensus 184 ~~----~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~-~~l~~ 258 (549)
.. .....++++++|+|| ||||.||++.++|.+...........+ ....+|++++.+|++|.+++...+ .++..
T Consensus 594 ~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~g 671 (994)
T PRK07868 594 LPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-ALDRRDTVYCLTPLHHESGLLVSLGGAVVG 671 (994)
T ss_pred CCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-CCCCCCeEEEecChHHHhHHHHHHHHHhcc
Confidence 00 011235789999998 577777777778776654443333333 467789999999999999996554 44555
Q ss_pred ccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEc
Q 008895 259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (549)
Q Consensus 259 g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~ 338 (549)
|+++++.+.++++.+++.|+++++|+++++|+++..+++.......+++++|.++ |+.+++++.+++.+.++++.+++
T Consensus 672 G~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~ 749 (994)
T PRK07868 672 GSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVE 749 (994)
T ss_pred ceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheee
Confidence 5556666678999999999999999999999999999886544445677899766 44599999999999997789999
Q ss_pred ccCccccccceecccCcCCCCCCCccccccCCc-EEEEE--cC--------CCC--CcCCCCCcceEEEecCCcccccCC
Q 008895 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIV--DP--------ETG--DSLPPGKEGELSIRGPTIMKGYVG 405 (549)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~--d~--------~~~--~~~~~g~~Gel~v~g~~~~~gy~~ 405 (549)
.||+||++...... .....+++|+|++|+ +++|. |+ +++ +.++.|+.|||+++++.. ++
T Consensus 750 ~YG~TE~~~~~~~~----~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~~ 821 (994)
T PRK07868 750 FFATTDGQAVLANV----SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----ID 821 (994)
T ss_pred eeeccccccccccc----CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----CC
Confidence 99999987543321 123567999999997 66653 21 344 567889999999999853 33
Q ss_pred Ccccc--ccccC-CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCce
Q 008895 406 EPEVT--SATLL-PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQM 482 (549)
Q Consensus 406 ~~~~~--~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~ 482 (549)
|+.+ ...|. .+|||+|||+|++|+||+++++||+||+||++|.+|+|.|||++|.+||+|.+|+|++++++. ++.
T Consensus 822 -p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~ 899 (994)
T PRK07868 822 -PTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQL 899 (994)
T ss_pred -hhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-Cce
Confidence 3322 22242 379999999999999999999999999999999999999999999999999999999998865 578
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 483 PMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 483 ~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
++++|+++++...+.++|++++++ ++.|++|+.|+++++||+|++||++|++|++..+...
T Consensus 900 ~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~lp~p 960 (994)
T PRK07868 900 AVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGIPKP 960 (994)
T ss_pred EEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCCCCC
Confidence 899999887777888999999986 9999999999999999999999999999998877643
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=545.16 Aligned_cols=490 Identities=22% Similarity=0.262 Sum_probs=380.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECC-------------------------CCceecHHHHHHHHHHHHHHhHHhcCC
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSV-------------------------TGLRVSFSEFTRRTNSLASYLQNVTRL 92 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~-------------------------~~~~~Ty~el~~~a~~~A~~L~~~~g~ 92 (549)
.|+.+.|.++++++ |+++|+.... ..+.+||+||.++++++|++|.+ +|+
T Consensus 69 ~t~~~~~~~~~~~~----p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~-~Gv 143 (700)
T PTZ00216 69 PNFLQRLERICKER----GDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAE-LGL 143 (700)
T ss_pred CCHHHHHHHHHHhC----CCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHH-hCC
Confidence 58999999999999 9999997621 24789999999999999999998 999
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc------C-CCeEEE
Q 008895 93 SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK------L-KHRTIL 165 (549)
Q Consensus 93 ~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~------~-~~~~~~ 165 (549)
++||+|+|+++|+++++++++||+++|++++|+++.++.+++.++++++++++++++......+.. . ...++.
T Consensus 144 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~ 223 (700)
T PTZ00216 144 TKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIY 223 (700)
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999998765544321 1 123444
Q ss_pred ecCC------------chhhhhccc--CCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC---
Q 008895 166 IDSP------------EFDSMTMSW--NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--- 228 (549)
Q Consensus 166 ~~~~------------~~~~~~~~~--~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--- 228 (549)
++.. .|.++.... ............++++++++|||||||.||||+++|+++++.+......+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~ 303 (700)
T PTZ00216 224 LDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDL 303 (700)
T ss_pred ECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccc
Confidence 4321 123322211 00001112234678999999999999999999999999998877655433
Q ss_pred -CCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHH-------HHHHhceeeeeecHHHHHHHHhCCC
Q 008895 229 -PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLK-------AVEEFRVTHAAVTPPIVVAMSKGGS 300 (549)
Q Consensus 229 -~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~-------~l~~~~~t~l~~~P~~l~~l~~~~~ 300 (549)
....+++++++.+|++|.+++......+..|+.+.+. ++..+.+ .+++++||++.++|.++..+.+...
T Consensus 304 ~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~ 380 (700)
T PTZ00216 304 IGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVE 380 (700)
T ss_pred cCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHH
Confidence 1235688999999999999886555667778776653 3455544 6889999999999999887754210
Q ss_pred C-------------------------CCCC---------------C-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 301 T-------------------------DGYD---------------L-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 301 ~-------------------------~~~~---------------l-~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
. .+.. + +++|.+++||+++++++.++++..+ + .+++.
T Consensus 381 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~ 458 (700)
T PTZ00216 381 AKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQG 458 (700)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhc
Confidence 0 0000 1 5799999999999999998888776 5 89999
Q ss_pred cCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCC-CcCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~-~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~ 418 (549)
||+||++..+.... ......+++|+|++|++++|+|+++. ...+++..|||+|+|++++.|||++|+.|.+.|..+|
T Consensus 459 YG~TEt~~~~~~~~--~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dG 536 (700)
T PTZ00216 459 WGLTETVCCGGIQR--TGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDG 536 (700)
T ss_pred cCcccccccccccC--CCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccC
Confidence 99999976654422 22345689999999999999995432 2345567899999999999999999999999998899
Q ss_pred eeecCceEEEecCCeEEEEcccCCeee-eCcEeeChHHHHHHHHcCCCcceE--EEEeecCCCCCceeEEEEEeCCCC--
Q 008895 419 WMRTGDLCYIDEDGFLFIVDRLKDLIK-YKGYQVAPAELEHLLLSHREVADA--AVIPYPDEEAGQMPMAFVVRQPHS-- 493 (549)
Q Consensus 419 ~~~TGD~~~~~~~g~~~~~GR~~d~i~-~~G~~v~~~~IE~~l~~~~~v~~~--~vv~~~~~~~~~~~~~~v~~~~~~-- 493 (549)
||+|||+|++|+||+++++||+||+|| .+|++|+|.+||++|.++|.|.++ +|++.++ ...++++|++....
T Consensus 537 w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~~~~~~ 613 (700)
T PTZ00216 537 WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTDEAKAM 613 (700)
T ss_pred CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecC---CceEEEEEecCHHHHH
Confidence 999999999999999999999999999 699999999999999999999973 4443322 35778888864210
Q ss_pred ------C--CC------H----HHHHHHH-----HhcCCCCCcccEEEEeC------ccCCCCCCcccHHHHHcccCc
Q 008895 494 ------S--LN------E----AEIMEFV-----ARQVSPYKKIRRVAFIN------AIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 494 ------~--~~------~----~~i~~~l-----~~~l~~~~~p~~i~~v~------~lP~t~~GKv~r~~l~~~~~~ 542 (549)
. .+ . +.+.+.+ +..+..+.+++.|.++. .=-+|+++|++|+++++.|.+
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~ 691 (700)
T PTZ00216 614 AFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYAD 691 (700)
T ss_pred HHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHH
Confidence 0 01 0 1222322 23688899999888873 234699999999999988753
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-63 Score=522.79 Aligned_cols=491 Identities=26% Similarity=0.390 Sum_probs=401.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
++..+.|.+.++.+ |+++|+... +..+||.||.++++++|.+|.+ .|+++||+|+++++|++++++++|||++
T Consensus 18 ~~~~~~~~~~~~~~----~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~~~ 90 (545)
T PRK08162 18 LTPLSFLERAAEVY----PDRPAVIHG--DRRRTWAETYARCRRLASALAR-RGIGRGDTVAVLLPNIPAMVEAHFGVPM 90 (545)
T ss_pred CCHHHHHHHHHHHC----CCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence 68889999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----CC-CeEEEecC--C-----------chhhhhcccC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LK-HRTILIDS--P-----------EFDSMTMSWN 179 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~-~~~~~~~~--~-----------~~~~~~~~~~ 179 (549)
+|++++|+++..+.+++..+++.++++.++++......+.+ .. ...+.++. . .+..+.....
T Consensus 91 ~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (545)
T PRK08162 91 AGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGD 170 (545)
T ss_pred hCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCC
Confidence 99999999999999999999999999999999877655432 11 11222221 1 1222211110
Q ss_pred CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhc
Q 008895 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g 259 (549)
.. ..........+.++++|||||||.||+|+++|+++..+........ ....++++++.+|++|.+++...+.....+
T Consensus 171 ~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~ 248 (545)
T PRK08162 171 PD-FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-GMPKHPVYLWTLPMFHCNGWCFPWTVAARA 248 (545)
T ss_pred cc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeeEeccCcHhhhhHHHHHHHHHHc
Confidence 00 0011112345789999999999999999999998866655444444 356778999999999999985555555567
Q ss_pred cEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+..+....+++..+++.|+++++|++.++|+++..|++........+.+.+.++++|+++++++.+.+.+. ++.+++.
T Consensus 249 g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~ 326 (545)
T PRK08162 249 GTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHV 326 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeec
Confidence 77777777899999999999999999999999999988654433445667778899999999999998875 7899999
Q ss_pred cCccccccceecccCcCC---------CCCCCccccccC-CcEEEEEcCCCCCcCCC-C-CcceEEEecCCcccccCCCc
Q 008895 340 YGLTESTAGVFRTVGPDE---------CRRWGSTGRLSA-GLEAKIVDPETGDSLPP-G-KEGELSIRGPTIMKGYVGEP 407 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~-~~~~~i~d~~~~~~~~~-g-~~Gel~v~g~~~~~gy~~~~ 407 (549)
||+||++..+..+..... ....++.|.+.+ +..++|+|++++.+++. | +.|||+|+|+.++.||++++
T Consensus 327 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~ 406 (545)
T PRK08162 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNP 406 (545)
T ss_pred ccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCCh
Confidence 999998654443221110 011234566654 34578889778888876 3 46999999999999999999
Q ss_pred cccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEE
Q 008895 408 EVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFV 487 (549)
Q Consensus 408 ~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v 487 (549)
+.+...| .+|||+|||+|++|++|++++.||.+|++|++|++|+|.+||+.|.++|+|.+++|++.++...++.+++++
T Consensus 407 ~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v 485 (545)
T PRK08162 407 KATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFV 485 (545)
T ss_pred hhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEE
Confidence 9998888 579999999999999999999999999999999999999999999999999999999998877788999999
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 488 VRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 488 ~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
++.++...+.++++++++++|+++++|..+++ ++||+|++||++|+.|++++.
T Consensus 486 ~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~ 538 (545)
T PRK08162 486 ELKDGASATEEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAK 538 (545)
T ss_pred EeCCCCCCCHHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHh
Confidence 98876667889999999999999999998875 689999999999999998754
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=533.81 Aligned_cols=511 Identities=22% Similarity=0.255 Sum_probs=390.7
Q ss_pred CceeccCCCCCCCCCC-CCCCCHHHHHhhcccCCCCCCCCCcEEEEC-----CCC--ceecHHHHHHHHHHHHHHhHHhc
Q 008895 19 TKTFHSLRPPIDLPPE-DAPISAVDYVSSLRATLPWRDDDTVALINS-----VTG--LRVSFSEFTRRTNSLASYLQNVT 90 (549)
Q Consensus 19 ~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~-----~~~--~~~Ty~el~~~a~~~A~~L~~~~ 90 (549)
..+|++...+-.++.. ..-.|+.++|.+.++++ |+++|+... ..+ ..+||+||.++++++|++|.+ .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~ 96 (660)
T PLN02430 22 GPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKY----PDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRA-S 96 (660)
T ss_pred CCccccccccccccCCCCCCCCHHHHHHHHHHhC----CCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-c
Confidence 4556654432222111 12258999999999999 999998632 111 347999999999999999999 8
Q ss_pred CCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH-HHhc----C-CCe-E
Q 008895 91 RLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-KLAK----L-KHR-T 163 (549)
Q Consensus 91 g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-~~~~----~-~~~-~ 163 (549)
|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++..... .+.. . ... +
T Consensus 97 Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~i 176 (660)
T PLN02430 97 GAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAI 176 (660)
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999875332 2211 0 122 3
Q ss_pred EEecCC----------------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhcc
Q 008895 164 ILIDSP----------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS 227 (549)
Q Consensus 164 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~ 227 (549)
+.++.. .++++....... ........++++++++|||||||.||||++||+++.+.+......
T Consensus 177 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~ 255 (660)
T PLN02430 177 VSFTSVTEEESDKASQIGVKTYSWIDFLHMGKEN-PSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLF 255 (660)
T ss_pred EEECCCChHHhhhhhcCCcEEEEHHHHHHhhccC-CCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhh
Confidence 333321 122222111100 111122357899999999999999999999999998877654322
Q ss_pred ---C-CCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC---
Q 008895 228 ---S-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--- 300 (549)
Q Consensus 228 ---~-~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--- 300 (549)
+ ......|++++.+|++|.++....+.++..|+++.+... ++..+++.|.+.+||++.++|.++..+.+...
T Consensus 256 ~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~ 334 (660)
T PLN02430 256 MEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKAL 334 (660)
T ss_pred ccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHH
Confidence 1 135678999999999999998666677888998877653 77899999999999999999999887754210
Q ss_pred ----------------------------CCCCC-------------C-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEc
Q 008895 301 ----------------------------TDGYD-------------L-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (549)
Q Consensus 301 ----------------------------~~~~~-------------l-~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~ 338 (549)
..... + +++|.+++||+++++++.+.++ .++++.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~ 413 (660)
T PLN02430 335 QELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQ 413 (660)
T ss_pred hccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeee
Confidence 00000 1 5899999999999999876555 444578999
Q ss_pred ccCccccccceecccCcCCCCCCCccccccCCcEEEEEc-CCCC-CcCCCCCcceEEEecCCcccccCCCccccccccCC
Q 008895 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVD-PETG-DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP 416 (549)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~ 416 (549)
.||+||+++.++.... ......+++|.|.+++++++.| ++.+ .+++.+..|||+|+|++++.||+++|+.|...| .
T Consensus 414 ~YG~TE~~~~~~~~~~-~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~ 491 (660)
T PLN02430 414 GYGLTETLGPTTLGFP-DEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-K 491 (660)
T ss_pred ecchhhhhhceEeecc-ccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-h
Confidence 9999999876654322 2223468999999999999987 3333 456666789999999999999999999999988 6
Q ss_pred CCeeecCceEEEecCCeEEEEcccCCeeee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC--
Q 008895 417 DGWMRTGDLCYIDEDGFLFIVDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS-- 493 (549)
Q Consensus 417 ~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~-- 493 (549)
+|||+|||+|++|++|++++.||+||+||. +|++|+|.+||++|.++|.|.+++|++.. .++.++++|++.+..
T Consensus 492 dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~ 568 (660)
T PLN02430 492 DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTN 568 (660)
T ss_pred ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHH
Confidence 899999999999999999999999999997 79999999999999999999999999732 356889999875421
Q ss_pred --------CCC----------HHHHHHHH-----HhcCCCCCcccEEEEeC-cc-----CCCCCCcccHHHHHcccCc
Q 008895 494 --------SLN----------EAEIMEFV-----ARQVSPYKKIRRVAFIN-AI-----PKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 494 --------~~~----------~~~i~~~l-----~~~l~~~~~p~~i~~v~-~l-----P~t~~GKv~r~~l~~~~~~ 542 (549)
..+ .+.+.+.+ +++|+.+.+++.|.+.+ .+ .+|+++|++|+.+.+.|.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02430 569 KWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQV 646 (660)
T ss_pred HHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHH
Confidence 001 11222222 23599999999888874 33 4899999999999887743
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-63 Score=518.62 Aligned_cols=482 Identities=27% Similarity=0.359 Sum_probs=399.6
Q ss_pred hcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccC
Q 008895 46 SLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125 (549)
Q Consensus 46 ~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l 125 (549)
..++++ |+++|+++...++.+||.||.++++++|++|.+ .|+++|++|+++++|+++++++++||+++|++++++
T Consensus 5 ~~a~~~----p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~-~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l 79 (511)
T PRK13391 5 IHAQTT----PDKPAVIMASTGEVVTYRELDERSNRLAHLFRS-LGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCV 79 (511)
T ss_pred hhHhhC----CCceEEEecCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecc
Confidence 445666 999999875557899999999999999999998 899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CC-eEEEecCC----c---hhhhhcccCCCccccccccCCC
Q 008895 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP----E---FDSMTMSWNSKHELDRAKVCQS 192 (549)
Q Consensus 126 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~ 192 (549)
++.++.+.+.++++.++++.++++.......... .. ..+.++.. . +.+.... .+........
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 154 (511)
T PRK13391 80 NSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAG-----LPATPIADES 154 (511)
T ss_pred ccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcC-----CCCCCCCCcc
Confidence 9999999999999999999999998765543211 11 12222211 0 1111110 0011112334
Q ss_pred CEEEEEccCCCCCccchhhh--cHHHHHHHH---HHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC
Q 008895 193 DVAAIMYSSGTTGRVKGVML--THRNLTAAV---ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR 267 (549)
Q Consensus 193 ~~a~i~~TSGtTG~pK~v~~--t~~~l~~~~---~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~ 267 (549)
+.++++|||||||.||+|.+ +|.++.... ......+ ....+++++..+|++|.+++...+.++..|+++++.+.
T Consensus 155 ~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~ 233 (511)
T PRK13391 155 LGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-GFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEH 233 (511)
T ss_pred cccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-CCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCC
Confidence 57899999999999999995 465543222 2222223 35678899999999999998777889999999999988
Q ss_pred cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcccc
Q 008895 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (549)
Q Consensus 268 ~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 345 (549)
+++..+++.++++++|++.++|+++..+.+.... ...+++++|.+++||+++++++.+.+++.+ +..+++.||+||+
T Consensus 234 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~ 312 (511)
T PRK13391 234 FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEG 312 (511)
T ss_pred CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccc
Confidence 9999999999999999999999999888765432 233578999999999999999999999988 6789999999999
Q ss_pred ccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCC-CeeecCc
Q 008895 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-GWMRTGD 424 (549)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~-~~~~TGD 424 (549)
+.+.... ........+++|.|+++ .++++| +++++++.|+.|||+++|+ ++.||+++++.+...+..+ +||+|||
T Consensus 313 ~~~~~~~-~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD 388 (511)
T PRK13391 313 LGFTACD-SEEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGD 388 (511)
T ss_pred cceEEec-CccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCC
Confidence 8765432 22222345789999999 689999 6788999999999999999 8889999999988887665 9999999
Q ss_pred eEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCC---CCHHHHH
Q 008895 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS---LNEAEIM 501 (549)
Q Consensus 425 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~---~~~~~i~ 501 (549)
+|+++++|.+++.||.+|++|++|++|++.+||++|.+||.|.+++|++.++...++.++++++..+... ...+++.
T Consensus 389 ~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 468 (511)
T PRK13391 389 IGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELI 468 (511)
T ss_pred EEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888888999988765432 2347899
Q ss_pred HHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 502 EFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 502 ~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
++++++|+.++.|..|.+++++|+|++||++|+.|++.+...
T Consensus 469 ~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~~ 510 (511)
T PRK13391 469 AFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWGN 510 (511)
T ss_pred HHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhcc
Confidence 999999999999999999999999999999999999988764
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=519.36 Aligned_cols=469 Identities=30% Similarity=0.421 Sum_probs=396.0
Q ss_pred CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 008895 66 TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145 (549)
Q Consensus 66 ~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 145 (549)
.++.+||.||.++++++|++|.+ .|+++|++|+++++|+.+++++++||+++|++++|+++.++.+++.++++..++++
T Consensus 8 ~~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (502)
T PRK08276 8 SGEVVTYGELEARSNRLAHGLRA-LGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKV 86 (502)
T ss_pred CCcEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCE
Confidence 38999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCccHHHHhcC------CCeEEEecCC------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhc
Q 008895 146 AFATSSVVHKLAKL------KHRTILIDSP------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLT 213 (549)
Q Consensus 146 ii~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t 213 (549)
++++......+... ....+.+... .+++..... ........++.++++|||||||.||+|.++
T Consensus 87 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGtTG~PK~v~~~ 161 (502)
T PRK08276 87 LIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQ-----PDTPIADETAGADMLYSSGTTGRPKGIKRP 161 (502)
T ss_pred EEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcC-----CCCCCCCCCcceEEEECCCCCCCCceEEEc
Confidence 99988766554321 2222222211 122221111 111123446789999999999999999988
Q ss_pred HHHHHHHH------HHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeee
Q 008895 214 HRNLTAAV------ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287 (549)
Q Consensus 214 ~~~l~~~~------~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 287 (549)
|.++.... ....... ....++++++.+|++|.+++...+.++..|+++++.+.+++..+++.++++++|++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~ 240 (502)
T PRK08276 162 LPGLDPDEAPGMMLALLGFGM-YGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQL 240 (502)
T ss_pred cCCcchhhhhHHhhhhhhhcc-cCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEe
Confidence 77654322 1111122 1246788999999999999877778999999999988899999999999999999999
Q ss_pred cHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccc
Q 008895 288 TPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365 (549)
Q Consensus 288 ~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G 365 (549)
+|+++..+++.... ...+++++|.+++||++++.++++++.+.+ +..+++.||+||++.+++... .......+++|
T Consensus 241 ~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~-~~~~~~~~~~G 318 (502)
T PRK08276 241 VPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS-EDWLAHPGSVG 318 (502)
T ss_pred hHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC-ccccccCCCcc
Confidence 99999999876532 334578999999999999999999999988 678999999999988665432 22234557899
Q ss_pred cccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeee
Q 008895 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIK 445 (549)
Q Consensus 366 ~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~ 445 (549)
.|+ +..++++| +++.+++.|+.|||+++|+.++.||+++++.+...+.+++||+|||+|+++++|.+++.||.||++|
T Consensus 319 ~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~ 396 (502)
T PRK08276 319 KAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMII 396 (502)
T ss_pred eec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEE
Confidence 999 88999999 6688999999999999999999999999999999988779999999999999999999999999999
Q ss_pred eCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCcccEEEEeCc
Q 008895 446 YKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE---AEIMEFVARQVSPYKKIRRVAFINA 522 (549)
Q Consensus 446 ~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~~l~~~l~~~~~p~~i~~v~~ 522 (549)
.+|.+|++.+||.+|.++|+|.+++|++..+...++.++++++.+++...+. +++.+.++++|+.++.|..++++++
T Consensus 397 ~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~ 476 (502)
T PRK08276 397 SGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDE 476 (502)
T ss_pred eCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEecC
Confidence 9999999999999999999999999999999888899999999876544333 4899999999999999999999999
Q ss_pred cCCCCCCcccHHHHHcccCcCCC
Q 008895 523 IPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 523 lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
||+|++||++|++|++.+.++..
T Consensus 477 lP~t~~GKi~r~~L~~~~~~~~~ 499 (502)
T PRK08276 477 LPRTPTGKLYKRRLRDRYWEGRQ 499 (502)
T ss_pred CCCCcccchhHHHHHHHHHhhhh
Confidence 99999999999999999877654
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=516.39 Aligned_cols=474 Identities=28% Similarity=0.399 Sum_probs=397.2
Q ss_pred cEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHH
Q 008895 59 VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQI 138 (549)
Q Consensus 59 ~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l 138 (549)
.|+++. ++.+||.||.++++++|++|.+ .|+++|++|+++++|+++++++++||+++|+++++++|.++.+++.+++
T Consensus 3 ~~~~~~--~~~~Ty~el~~~~~~la~~l~~-~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l 79 (509)
T PRK12406 3 ATIISG--DRRRSFDELAQRAARAAGGLAA-LGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYIL 79 (509)
T ss_pred eEEEEC--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHH
Confidence 356665 7899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEcCccHHHHhcC---CCeEEEecCC---------------------chhhhhcccCCCccccccccCCCCE
Q 008895 139 QLSNPVIAFATSSVVHKLAKL---KHRTILIDSP---------------------EFDSMTMSWNSKHELDRAKVCQSDV 194 (549)
Q Consensus 139 ~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (549)
+.+++++++++......+.+. ....+..+.. .+++.... .........+++
T Consensus 80 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 154 (509)
T PRK12406 80 EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQ-----QEPYDGPPVPQP 154 (509)
T ss_pred hccCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcc-----cCccCCCCCCCc
Confidence 999999999988766544321 1122211111 01111000 001122346789
Q ss_pred EEEEccCCCCCccchhhhcHHHH---HHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHH
Q 008895 195 AAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271 (549)
Q Consensus 195 a~i~~TSGtTG~pK~v~~t~~~l---~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~ 271 (549)
++++|||||||.||+|.++|... ..........+ +...+++++..+|++|..+....+.++..|+++++.+.+++.
T Consensus 155 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 233 (509)
T PRK12406 155 QSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPE 233 (509)
T ss_pred eEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhc-CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHH
Confidence 99999999999999999866543 33333333333 457788999999999988876667778889999988888999
Q ss_pred HHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccce
Q 008895 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (549)
Q Consensus 272 ~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~ 349 (549)
.+++.++++++|.++++|+++..+++... ....+++++|.+++||+++++++++++.+.+ ++.+++.||+||++.++
T Consensus 234 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~ 312 (509)
T PRK12406 234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVT 312 (509)
T ss_pred HHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceE
Confidence 99999999999999999999999887543 2334578999999999999999999999988 68899999999999866
Q ss_pred ecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCccc-ccCCCccccccccCCCCeeecCceEEE
Q 008895 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK-GYVGEPEVTSATLLPDGWMRTGDLCYI 428 (549)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~-gy~~~~~~~~~~~~~~~~~~TGD~~~~ 428 (549)
+... .......+++|.|++++.++++| +++++++.|+.|||+++|++++. ||+++++.+...+ .++||+|||+|++
T Consensus 313 ~~~~-~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~ 389 (509)
T PRK12406 313 FATS-EDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYL 389 (509)
T ss_pred ecCc-ccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEE
Confidence 5432 22223457899999999999999 66889999999999999998875 9999988877655 6899999999999
Q ss_pred ecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC
Q 008895 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQV 508 (549)
Q Consensus 429 ~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l 508 (549)
+++|.+++.||.||++|++|.+|++.+||++|.++++|.++++++.++...++.++++++..+....+.+++++++++.+
T Consensus 390 ~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l 469 (509)
T PRK12406 390 DADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARL 469 (509)
T ss_pred cCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999887788899999887665667899999999999
Q ss_pred CCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 509 SPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 509 ~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
+++++|..++++++||+|++||++|++|++.+.+.++
T Consensus 470 ~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~~~ 506 (509)
T PRK12406 470 AGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWANAG 506 (509)
T ss_pred ccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998876554
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=499.06 Aligned_cols=501 Identities=25% Similarity=0.322 Sum_probs=413.3
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECC----CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~ 112 (549)
-+|....+........ -++.+|++... +...+||.|+.+++.++|..|.+ .|+++||+|++++|+.+++++++
T Consensus 62 ~ln~~~n~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~-~g~~kGD~V~~~mPm~~e~~ia~ 138 (626)
T KOG1175|consen 62 FLNACYNCLDRHIKEK--GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRK-CGLKKGDTVAIYMPMIPEAVIAM 138 (626)
T ss_pred hhhhhHhhhhhhhhhc--CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHh-cCCCCCcEEEEeccCChHHHHHH
Confidence 3677776666643221 16777776431 12458999999999999999996 99999999999999999999999
Q ss_pred HHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-------------------CCeEEEec----CC
Q 008895 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------------------KHRTILID----SP 169 (549)
Q Consensus 113 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------------------~~~~~~~~----~~ 169 (549)
+||.++|++.+++...++...+..++.++++++|++.+......... ....+.+. +.
T Consensus 139 lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~ 218 (626)
T KOG1175|consen 139 LACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDL 218 (626)
T ss_pred HHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccc
Confidence 99999999999999999999999999999999999987543321110 00111111 11
Q ss_pred chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH
Q 008895 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~ 249 (549)
.|......... .......+.+++.+|+|||||||.||++.+++....-.............++|++++.....|+.|.
T Consensus 219 ~~~~~~~~a~~--~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~ 296 (626)
T KOG1175|consen 219 FWSLELKKASP--EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGH 296 (626)
T ss_pred cHHHHhhhcCC--CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeecc
Confidence 22222222111 2224456778999999999999999999999886655544444444468899999999999999988
Q ss_pred -HHHHHHhhhccEEEEec--CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHH
Q 008895 250 -FFCFRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTI 324 (549)
Q Consensus 250 -~~~~~~l~~g~~~~~~~--~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~ 324 (549)
+..++++..|+++++.. ++++..+++.+.++++|+++..|+.++.|.+.... ...++++||.+.++||++.++..
T Consensus 297 ~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ 376 (626)
T KOG1175|consen 297 SYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAW 376 (626)
T ss_pred chhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchH
Confidence 55677999999999975 46999999999999999999999999987765543 33445789999999999999999
Q ss_pred HHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCC-CcceEEEecC---Ccc
Q 008895 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG-KEGELSIRGP---TIM 400 (549)
Q Consensus 325 ~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g-~~Gel~v~g~---~~~ 400 (549)
+++.+.++.-++.+.||+||+|..++.+........+++.+.|.+|+.+.|+| ++++.++.+ +.|+|+++.+ +.+
T Consensus 377 ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~l~~~~~~P~~~~ 455 (626)
T KOG1175|consen 377 EWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGELRLKPPWPPGMF 455 (626)
T ss_pred HHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCCceeEEEEeCCCCcccc
Confidence 99999994336999999999999988765444367889999999999999999 578888776 8999999973 779
Q ss_pred cccCCCccccccccCC--CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCC
Q 008895 401 KGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEE 478 (549)
Q Consensus 401 ~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~ 478 (549)
++||++++........ .|+|.|||.+++|+||++++.||.||+++++|.++++.|||+++.+||.|.|++||+.+++.
T Consensus 456 r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~ 535 (626)
T KOG1175|consen 456 RTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPI 535 (626)
T ss_pred ccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCC
Confidence 9999999955555444 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 479 AGQMPMAFVVRQPHSSLNE---AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 479 ~~~~~~~~v~~~~~~~~~~---~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
.++.+++||+++++..... ++|.+++++.+.+++.|+.|.+++.||+|.|||+.|+.||+.+...
T Consensus 536 ~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 536 KGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred CCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 9999999999998854332 5788888999999999999999999999999999999999988765
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=507.32 Aligned_cols=480 Identities=27% Similarity=0.392 Sum_probs=378.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCC--CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVT--GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~--~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~ 115 (549)
.++...+.++++.+ |+.+|+..... .+.+||+|+.+++..+|++|++ .|+..||+|+|++.|+++|+++.+||
T Consensus 16 ~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~-lg~~~gdrvai~a~nr~eW~i~d~a~ 90 (613)
T COG1022 16 HTLPKRLAERVKDR----PDGVALMYKELGGWEAITYRELYERVRALASGLLS-LGIPAGDRVAIFAANRPEWAIADLAI 90 (613)
T ss_pred ccHHHHHHHHhhcC----CcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 57889999999999 88888875432 4799999999999999999999 99977999999999999999999999
Q ss_pred HHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHH-HhcCCC--eEEE-----ec---------CCchhhhhccc
Q 008895 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHK-LAKLKH--RTIL-----ID---------SPEFDSMTMSW 178 (549)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~-~~~~~~--~~~~-----~~---------~~~~~~~~~~~ 178 (549)
+.+|++.||+.++.+++.+.++|+++++++|+++...... +..... ..+. ++ ...+.......
T Consensus 91 ~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (613)
T COG1022 91 LALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEG 170 (613)
T ss_pred HHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccccc
Confidence 9999999999999999999999999999999998854332 221111 0000 00 00000000000
Q ss_pred CC-------CccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHH
Q 008895 179 NS-------KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251 (549)
Q Consensus 179 ~~-------~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~ 251 (549)
.. ..........++|+|.|+|||||||.||||++||+|+++++.......+...++|+.++.+|+.|++...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~ 250 (613)
T COG1022 171 ISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAF 250 (613)
T ss_pred chhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHH
Confidence 00 00111134578999999999999999999999999999999999988843779999999999999999865
Q ss_pred HHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC----CCC------------------------
Q 008895 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS----TDG------------------------ 303 (549)
Q Consensus 252 ~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~----~~~------------------------ 303 (549)
. ..+..++........++..+++.++.++||+++++|.+|+.+-+... ...
T Consensus 251 ~-~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~ 329 (613)
T COG1022 251 E-GGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329 (613)
T ss_pred H-HHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcc
Confidence 3 23333344444445589999999999999999999998855432211 000
Q ss_pred ------------------C-CC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCc
Q 008895 304 ------------------Y-DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS 363 (549)
Q Consensus 304 ------------------~-~l-~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~ 363 (549)
. .+ .++|.+++||+++++++...++.. ++++.++||+|||++.++.+ .......++
T Consensus 330 ~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~--~~~~~~~gt 405 (613)
T COG1022 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVN--PPDRFVLGT 405 (613)
T ss_pred cCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEc--cccCcccCC
Confidence 0 01 378999999999999999999998 89999999999999988774 445567899
Q ss_pred cccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCe
Q 008895 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL 443 (549)
Q Consensus 364 ~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ 443 (549)
+|.|+|+++++|.| .|||+|+||.+|+|||++|+.|.+.|++||||+|||+|.+|++|++++.||++|+
T Consensus 406 vG~p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~ 474 (613)
T COG1022 406 VGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKEL 474 (613)
T ss_pred cCCcCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccce
Confidence 99999999999998 4999999999999999999999999999999999999999999999999999999
Q ss_pred eee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCC------------CCH------HHHHH--
Q 008895 444 IKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS------------LNE------AEIME-- 502 (549)
Q Consensus 444 i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~------------~~~------~~i~~-- 502 (549)
||. +|++|.|..||+.+..+|-|.+.+|++ .+ ...+.+.|++..+.- .+. .++.+
T Consensus 475 i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~---k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~ 550 (613)
T COG1022 475 IKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DD---KKFLVALIVPDFDALEKWAESLNKVISASREELARDPKLLKLI 550 (613)
T ss_pred EECCCCcccChHHHHHHHhcCCCeeEEEEEe-cC---CcceEEEEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHH
Confidence 999 999999999999999999999999997 22 347888888654310 011 11222
Q ss_pred --HHH---hcCCCCCcccEEEEe-CccC-----CCCCCcccHHHHHcccCc
Q 008895 503 --FVA---RQVSPYKKIRRVAFI-NAIP-----KSAAGKILRMELRKVAVP 542 (549)
Q Consensus 503 --~l~---~~l~~~~~p~~i~~v-~~lP-----~t~~GKv~r~~l~~~~~~ 542 (549)
.+. ..+..+.++..+... .++. .|++-|++|..+.+.+..
T Consensus 551 ~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~ 601 (613)
T COG1022 551 LPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKD 601 (613)
T ss_pred HHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhh
Confidence 221 124556677655554 3444 488999999998887754
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=532.29 Aligned_cols=506 Identities=21% Similarity=0.259 Sum_probs=384.9
Q ss_pred CCCceeccCC----CCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCC----CceecHHHHHHHHHHHHHHhHH
Q 008895 17 SATKTFHSLR----PPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQN 88 (549)
Q Consensus 17 ~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~a~~~A~~L~~ 88 (549)
++..++++.. ...++|....+.++.+.|.+.++++ |+++|+++... .+.+||+||.++++++|++|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~----pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~ 99 (624)
T PRK12582 24 PDISVERRADGSIVIKSRHPLGPYPRSIPHLLAKWAAEA----PDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLD 99 (624)
T ss_pred CceEEEEcCCceEEEecCCCCCCcccCHHHHHHHHHHHC----CCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHH
Confidence 3344444443 2345665555689999999999999 99999986421 1689999999999999999998
Q ss_pred hcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCH-----HHHHHHHhhcCCeEEEEcCcc-HH-HHh---c
Q 008895 89 VTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTE-----SEISRQIQLSNPVIAFATSSV-VH-KLA---K 158 (549)
Q Consensus 89 ~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~-~~-~~~---~ 158 (549)
.|+++||+|+++++|++++++++|||+++|++++|++|.++. +++.++++.++++++|+++.. .. .+. .
T Consensus 100 -~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~ 178 (624)
T PRK12582 100 -LGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL 178 (624)
T ss_pred -cCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999874 899999999999999998642 11 111 1
Q ss_pred CCCeEEEecCC-------chhhhhcccCCC-ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCC
Q 008895 159 LKHRTILIDSP-------EFDSMTMSWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230 (549)
Q Consensus 159 ~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~ 230 (549)
.....+.++.. .+.++....... .........++++++++|||||||.||+|+++|+++..+..........
T Consensus 179 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 258 (624)
T PRK12582 179 LDVTVVHVTGPGEGIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPR 258 (624)
T ss_pred cCceEEEEcCCCcccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccc
Confidence 12334444321 233322211100 0001122456889999999999999999999999998877655443321
Q ss_pred CC--CCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecC-cCH---HHHHHHHHHhceeeeeecHHHHHHHHhCCCCC-
Q 008895 231 RV--SPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR-FDL---KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD- 302 (549)
Q Consensus 231 ~~--~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~-~~~---~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~- 302 (549)
.. ..++.+.++|++|.+|+ ..++.++..|+++++.+. +++ ..+++.++++++|+++++|.++..|++.....
T Consensus 259 ~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~ 338 (624)
T PRK12582 259 EPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDD 338 (624)
T ss_pred cCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCH
Confidence 11 25789999999999998 445678888999888652 333 45677788999999999999998887643221
Q ss_pred ---CCCCCCceEEEEecCCCCHHHHHHHHHhC----C-CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEE
Q 008895 303 ---GYDLSSLETVACGAAPLGKDTIMAFASKF----P-KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374 (549)
Q Consensus 303 ---~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~----~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 374 (549)
...++++|.+++||+++++++.+++.+.+ + ++.+++.||+||++.++..... .....+++|+|++|++++
T Consensus 339 ~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~--~~~~~~svG~p~pg~~v~ 416 (624)
T PRK12582 339 ALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW--DTERVGLIGLPLPGVELK 416 (624)
T ss_pred HHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccC--CCCCCCCCCcCCCCcEEE
Confidence 12368999999999999999999998863 2 3679999999999876553211 224567999999999999
Q ss_pred EEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEE-e---cCCeEEEEcccCCeeee-CcE
Q 008895 375 IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI-D---EDGFLFIVDRLKDLIKY-KGY 449 (549)
Q Consensus 375 i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~-~---~~g~~~~~GR~~d~i~~-~G~ 449 (549)
+++ .|+.|||+|+|++++.||+++|+.+.+.|..+|||+|||+|++ | ++|++++.||+||+|++ +|+
T Consensus 417 i~~--------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~ 488 (624)
T PRK12582 417 LAP--------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGT 488 (624)
T ss_pred Ecc--------CCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCc
Confidence 864 5778999999999999999999999999988999999999998 4 46999999999999997 899
Q ss_pred eeChHHHH--HHHHcCCCcceEEEEeecCCCCCceeEEEEEeCC----------CC----CCCHHHHHHHHHhcC-----
Q 008895 450 QVAPAELE--HLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP----------HS----SLNEAEIMEFVARQV----- 508 (549)
Q Consensus 450 ~v~~~~IE--~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~----------~~----~~~~~~i~~~l~~~l----- 508 (549)
+|+|.+|| .++.+||.|.+++|++.+++.. .+.|++.. +. ..+.+++.++++..|
T Consensus 489 ~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~----g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 564 (624)
T PRK12582 489 WVSVGTLRPDAVAACSPVIHDAVVAGQDRAFI----GLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNA 564 (624)
T ss_pred EechHHHHHHHHHhcCcchheEEEEcCCCCcE----EEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHh
Confidence 99998885 6788999999999998876543 33433211 10 013345666665554
Q ss_pred --CCCC-cccEEEEeCccCC------CCCCcccHHHHHcccC
Q 008895 509 --SPYK-KIRRVAFINAIPK------SAAGKILRMELRKVAV 541 (549)
Q Consensus 509 --~~~~-~p~~i~~v~~lP~------t~~GKv~r~~l~~~~~ 541 (549)
+.+. +|+.+++++++|+ |++||+.|+++.+.|.
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~ 606 (624)
T PRK12582 565 EAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRA 606 (624)
T ss_pred hcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHH
Confidence 4444 9999999988775 5677888988877664
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=561.64 Aligned_cols=486 Identities=21% Similarity=0.280 Sum_probs=399.7
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
..++.+.+.+.+++++ |++.|+.+. .++++||+||+++++++|+.|++ |+++||+|+++++|+.+++++++||+
T Consensus 630 ~~~~~~~l~~~~~~~~---~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~--g~~~gd~V~i~~~n~~~~~~~~la~~ 703 (1140)
T PRK06814 630 DRTLFEALIEAAKIHG---FKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK--NTPPGENVGVMLPNANGAAVTFFALQ 703 (1140)
T ss_pred cCCHHHHHHHHHHHcC---CCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHH
Confidence 3678888888888883 466777653 36799999999999999999975 89999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHH------hc--CCCeEEEecCCc-----hhhhhccc-CCCc
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------AK--LKHRTILIDSPE-----FDSMTMSW-NSKH 182 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~------~~--~~~~~~~~~~~~-----~~~~~~~~-~~~~ 182 (549)
++|++++|++|..+.+++.+++++++++++++++...+.. .. ....++.++... +....... ....
T Consensus 704 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1140)
T PRK06814 704 SAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFP 783 (1140)
T ss_pred HCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCC
Confidence 9999999999999999999999999999999987654321 11 122344333211 00000000 0000
Q ss_pred cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccE
Q 008895 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMET 261 (549)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~ 261 (549)
........++++++++|||||||.||+|.++|+++.++.......+ ...++|++++.+|++|.+++ ...+.++..|++
T Consensus 784 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~ 862 (1140)
T PRK06814 784 LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVK 862 (1140)
T ss_pred ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-CCCCcCEEEEecchHHHHHHHHHHHHHHHcCCE
Confidence 1111134678999999999999999999999999998887776666 46788999999999999998 667888999999
Q ss_pred EEEecC-cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEccc
Q 008895 262 AVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (549)
Q Consensus 262 ~~~~~~-~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~y 340 (549)
+++.+. .+...+.+.++++++|+++.+|+++..+.+.. ...+++++|.+++||+++++++.+.+.+.+ +.++++.|
T Consensus 863 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~Y 939 (1140)
T PRK06814 863 VFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGY 939 (1140)
T ss_pred EEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEecc
Confidence 988763 56778899999999999999999999887653 345678999999999999999999999988 78999999
Q ss_pred CccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCee
Q 008895 341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420 (549)
Q Consensus 341 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~ 420 (549)
|+||++..+.... ......+++|+|.|++++++.+.+ + .++.|||+++|++++.||+++++........+|||
T Consensus 940 G~TE~~~~~~~~~--~~~~~~~~vG~p~~g~~~~~~~~~-~----~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~ 1012 (1140)
T PRK06814 940 GVTETAPVIALNT--PMHNKAGTVGRLLPGIEYRLEPVP-G----IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWY 1012 (1140)
T ss_pred ccccccceEEecC--CCCCCCCcCCccCCCCeEEEeecC-C----CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeE
Confidence 9999987665432 223356789999999999998732 2 35779999999999999998765432222358999
Q ss_pred ecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHH
Q 008895 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEI 500 (549)
Q Consensus 421 ~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i 500 (549)
+|||+|++|+||++++.||.||++|++|++|+|.|||++|.+++.+.+++|++++++..++.+++++. ....+.+++
T Consensus 1013 ~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~~~~~l 1089 (1140)
T PRK06814 1013 DTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDATRAAF 1089 (1140)
T ss_pred ecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888777654 234577899
Q ss_pred HHHHHhc-CCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 501 MEFVARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 501 ~~~l~~~-l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
.++++++ ++++++|..+++++++|+|++||+||++|++++.+
T Consensus 1090 ~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 1132 (1140)
T PRK06814 1090 LAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEE 1132 (1140)
T ss_pred HHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHH
Confidence 9999874 99999999999999999999999999999998754
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=508.78 Aligned_cols=443 Identities=21% Similarity=0.279 Sum_probs=379.8
Q ss_pred ccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCC
Q 008895 48 RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127 (549)
Q Consensus 48 ~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~ 127 (549)
++++ |+++|+++. ++.+||.||.++++++|+.|.+ .|+.+|++|+++++|+++++++++||+++|++++|+++
T Consensus 13 a~~~----~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~ 85 (458)
T PRK09029 13 AQVR----PQAIALRLN--DEVLTWQQLCARIDQLAAGFAQ-QGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNP 85 (458)
T ss_pred HHhC----CCceeeecC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCC
Confidence 5667 999999976 7899999999999999999999 89999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEEEccCCCCCcc
Q 008895 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207 (549)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~p 207 (549)
..+.+++..+++++++++++++++... .... .... .. ... ........++++++++|||||||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~--~~~~-----~~----~~~---~~~~~~~~~~~~a~i~~TSGTTG~P 150 (458)
T PRK09029 86 QLPQPLLEELLPSLTLDFALVLEGENT-FSAL--TSLH-----LQ----LVE---GAHAVAWQPQRLATMTLTSGSTGLP 150 (458)
T ss_pred CCCHHHHHHHHHhcCCCEEEEcCcccc-hhhc--cccc-----cc----ccc---ccCcccCCCCCeEEEEECCCCCCCC
Confidence 999999999999999999999876432 1110 0000 00 000 1112234578899999999999999
Q ss_pred chhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeee
Q 008895 208 KGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287 (549)
Q Consensus 208 K~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 287 (549)
|+|.++|++++.........+ ....+++++..+|++|.+|+...+.++..|+++++.+. ..+++.+ .++|.+..
T Consensus 151 Kgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~---~~~~~~i--~~~t~~~~ 224 (458)
T PRK09029 151 KAAVHTAQAHLASAEGVLSLM-PFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK---QPLEQAL--AGCTHASL 224 (458)
T ss_pred CEEEEeHHHHHHHHHHHhhcC-CCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh---HHHHHHH--hhceeeec
Confidence 999999999999888777766 46778899999999999999777788999999888764 4566666 37899999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccc
Q 008895 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL 367 (549)
Q Consensus 288 ~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~ 367 (549)
+|+++..++..... ..++|.+++||+++++.+.+.+.+. +.++++.||+||++...+.... ....++|+|
T Consensus 225 ~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~----~~~~~~G~~ 294 (458)
T PRK09029 225 VPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA----DGLAGVGSP 294 (458)
T ss_pred ChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC----CCCCCCCCC
Confidence 99999988876432 3579999999999999999998875 7899999999999865543221 123569999
Q ss_pred cCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeC
Q 008895 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYK 447 (549)
Q Consensus 368 ~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~ 447 (549)
++++.+++++ |||+|+|+.++.||+++++.+.... .+|||+|||+|++| +|.+++.||++|++|++
T Consensus 295 ~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~ 360 (458)
T PRK09029 295 LPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFSG 360 (458)
T ss_pred CCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceeeC
Confidence 9999999987 9999999999999999988776443 57899999999999 99999999999999999
Q ss_pred cEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCC
Q 008895 448 GYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSA 527 (549)
Q Consensus 448 G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~ 527 (549)
|.+|+|.+||++|.++|+|.+++|++.++...++.++++|+... ..+.++++++++++|++|++|..+++++++|+|+
T Consensus 361 G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~ 438 (458)
T PRK09029 361 GEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVVNLAEWLQDKLARFQQPVAYYLLPPELKNG 438 (458)
T ss_pred CEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--ccCHHHHHHHHHhhchhccCCeEEEEecccccCc
Confidence 99999999999999999999999999999888899999998663 3578899999999999999999999999999999
Q ss_pred CCcccHHHHHcccCcCC
Q 008895 528 AGKILRMELRKVAVPSG 544 (549)
Q Consensus 528 ~GKv~r~~l~~~~~~~~ 544 (549)
+||++|+.|++++....
T Consensus 439 ~gKi~r~~L~~~~~~~~ 455 (458)
T PRK09029 439 GIKISRQALKEWVAQQL 455 (458)
T ss_pred CCCcCHHHHHHHHHhcc
Confidence 99999999999987543
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-63 Score=515.14 Aligned_cols=436 Identities=18% Similarity=0.246 Sum_probs=343.3
Q ss_pred cCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCcc------HHHHh---c-CCCeEEEecC---
Q 008895 102 STNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV------VHKLA---K-LKHRTILIDS--- 168 (549)
Q Consensus 102 ~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~------~~~~~---~-~~~~~~~~~~--- 168 (549)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. ...+. . .....+.+..
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 589999999999999999999999999999999999999999999998642 11111 1 1112222210
Q ss_pred ----------CchhhhhcccCC----Cc-cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCC
Q 008895 169 ----------PEFDSMTMSWNS----KH-ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233 (549)
Q Consensus 169 ----------~~~~~~~~~~~~----~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~ 233 (549)
..+.++...... .. ........++++++|+|||||||.||||+++|++++.+.......+ ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~ 159 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM-DIQP 159 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc-CCCC
Confidence 123332211000 00 0011122458899999999999999999999999887665444444 4567
Q ss_pred CcEEEEecChhhHHHHHHHHHHhhhccEEEEecC-cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCce
Q 008895 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLE 310 (549)
Q Consensus 234 ~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~-~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr 310 (549)
+|++++.+|++|.+++...+.++..|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++||
T Consensus 160 ~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr 239 (499)
T PLN03051 160 GDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLR 239 (499)
T ss_pred CCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhhe
Confidence 8999999999999998777889999999998864 788999999999999999999999999887543 2345678999
Q ss_pred EEEEecCCCCHHHHHHHHHhCC-CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCC--
Q 008895 311 TVACGAAPLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG-- 387 (549)
Q Consensus 311 ~v~~~Ge~l~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g-- 387 (549)
.+++||+++++++.+++++.++ ++.+++.||+||++....... .......+++|+|.++++++|+| +++++++.|
T Consensus 240 ~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~ 317 (499)
T PLN03051 240 VFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISST-LLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQP 317 (499)
T ss_pred EEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccc-ccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCC
Confidence 9999999999999988777431 478999999999875433221 11223457899999999999999 678889888
Q ss_pred CcceEEEecCCc--ccccCCCccccccccCCC---------CeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHH
Q 008895 388 KEGELSIRGPTI--MKGYVGEPEVTSATLLPD---------GWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAEL 456 (549)
Q Consensus 388 ~~Gel~v~g~~~--~~gy~~~~~~~~~~~~~~---------~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~I 456 (549)
+.|||+|+|+.+ +.||++++. +. .+..+ +||+|||+|++|+||+++++||+||+||++|++|+|.||
T Consensus 318 ~~Gel~v~g~~~~~~~gy~~~~~-~~-~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EI 395 (499)
T PLN03051 318 CVGEVALAPPMLGASDRLLNADH-DK-VYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEI 395 (499)
T ss_pred cceEEEEecCcCCCCccccCCcc-cc-eeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHH
Confidence 479999999976 589998653 32 33211 279999999999999999999999999999999999999
Q ss_pred HHHHHc-CCCcceEEEEeecCCCCC-ceeEEEE---EeCCCC-CCCHHHHHHHHH----hcCCCCCcccEEEEeCccCCC
Q 008895 457 EHLLLS-HREVADAAVIPYPDEEAG-QMPMAFV---VRQPHS-SLNEAEIMEFVA----RQVSPYKKIRRVAFINAIPKS 526 (549)
Q Consensus 457 E~~l~~-~~~v~~~~vv~~~~~~~~-~~~~~~v---~~~~~~-~~~~~~i~~~l~----~~l~~~~~p~~i~~v~~lP~t 526 (549)
|++|.+ ||+|.+++|++++++..+ +.+++|| +++++. ..+.++++++|+ ++|++++.|..|+++++||+|
T Consensus 396 E~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t 475 (499)
T PLN03051 396 ERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRN 475 (499)
T ss_pred HHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCC
Confidence 999986 999999999999998888 6888998 766553 356677776664 557777777789999999999
Q ss_pred CCCcccHHHHHcccCc
Q 008895 527 AAGKILRMELRKVAVP 542 (549)
Q Consensus 527 ~~GKv~r~~l~~~~~~ 542 (549)
++|||+|++|++.+.+
T Consensus 476 ~~GKi~r~~L~~~~~~ 491 (499)
T PLN03051 476 ASNKLLRRVLRDQLKK 491 (499)
T ss_pred CCccHHHHHHHHHHHH
Confidence 9999999999987644
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-63 Score=524.21 Aligned_cols=493 Identities=21% Similarity=0.308 Sum_probs=394.3
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCC--CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVT--GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~--~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~ 115 (549)
-++.+++...++++ |+.+ +++... .+.+||.||++++.++|.+|++ .|+++|++|+++++|++++++++|||
T Consensus 21 ~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~gi~~gd~V~l~~~n~~~~~~~~lA~ 94 (579)
T PRK09192 21 PTLVEALDYAALGE----AGMN-FYDRRGQLEEALPYQTLRARAEAGARRLLA-LGLKPGDRVALIAETDGDFVEAFFAC 94 (579)
T ss_pred hhHHHHHHHhhccC----CceE-EEecCCCEEEEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 48999999999888 7554 444321 2679999999999999999998 89999999999999999999999999
Q ss_pred HHcCCeEccCCCCCC-------HHHHHHHHhhcCCeEEEEcCccHHHHhcC--CCeEEEecCCchhhhhcccCCCccccc
Q 008895 116 LSLGVIISPANPVNT-------ESEISRQIQLSNPVIAFATSSVVHKLAKL--KHRTILIDSPEFDSMTMSWNSKHELDR 186 (549)
Q Consensus 116 ~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (549)
+++|++++|+++..+ .+++.++++.++++++++++...+.+.+. ....+.+ ..+.++...... ....
T Consensus 95 ~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~ 170 (579)
T PRK09192 95 QYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHV--LSHAWFKALPEA--DVAL 170 (579)
T ss_pred HHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccce--eehhhhcccCCC--cccc
Confidence 999999999986433 68899999999999999998766554432 1111111 112222111110 1112
Q ss_pred cccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhc-cCCCCCCCcEEEEecChhhHHHHH-HHHHHhhhccEEEE
Q 008895 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA-SSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVV 264 (549)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~g~~~~~ 264 (549)
....++++++++|||||||.||+|.++|+++...+..... .+ ...++|+++..+|++|.+|+. .++.++..|+++++
T Consensus 171 ~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~ 249 (579)
T PRK09192 171 PRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDY 249 (579)
T ss_pred CCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEe
Confidence 2345688999999999999999999999999988877666 44 567889999999999999985 45567888888876
Q ss_pred ecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC---CCCCCCCCceEEEEecCCCCHHHHHHHHHhCCC----
Q 008895 265 MQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIMAFASKFPK---- 333 (549)
Q Consensus 265 ~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~---~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~---- 333 (549)
... .++..+++.+.++++++++..|..+..+..... ....+++++|.+++||+++++.+.+.+.+.++.
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~ 329 (579)
T PRK09192 250 LPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFD 329 (579)
T ss_pred eCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCC
Confidence 642 367899999999999987765554444433221 223467899999999999999999999988731
Q ss_pred -CcEEcccCccccccceecccCcCC--------------------------CCCCCccccccCCcEEEEEcCCCCCcCCC
Q 008895 334 -VVLVQAYGLTESTAGVFRTVGPDE--------------------------CRRWGSTGRLSAGLEAKIVDPETGDSLPP 386 (549)
Q Consensus 334 -~~l~~~yG~tE~~~~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~ 386 (549)
..+++.||+||++..+........ .....++|.++|+++++|+| ++++.++.
T Consensus 330 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~ 408 (579)
T PRK09192 330 DKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPE 408 (579)
T ss_pred hhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCC
Confidence 358899999999765554221100 01124789999999999999 66888999
Q ss_pred CCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCc
Q 008895 387 GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREV 466 (549)
Q Consensus 387 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v 466 (549)
|+.|||+++|+.++.||+++ ..+...+..++||+|||+|++ ++|+++++||+||+||++|++|+|.+||++|.+||+|
T Consensus 409 g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V 486 (579)
T PRK09192 409 RVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPEL 486 (579)
T ss_pred CCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCc
Confidence 99999999999999999999 666777778999999999999 9999999999999999999999999999999999999
Q ss_pred c--eEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCC-CCCcccEEEEeC--ccCCCCCCcccHHHHHcccC
Q 008895 467 A--DAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVS-PYKKIRRVAFIN--AIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 467 ~--~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~-~~~~p~~i~~v~--~lP~t~~GKv~r~~l~~~~~ 541 (549)
. +++|++++++. ++.++++++..+....+.+++.+++++.+. .++.|..+.++. +||+|++||++|++|++++.
T Consensus 487 ~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~ 565 (579)
T PRK09192 487 RSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYL 565 (579)
T ss_pred cCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHH
Confidence 8 89999998875 457888887765555567889999999874 678888777774 89999999999999999999
Q ss_pred cCCC
Q 008895 542 PSGS 545 (549)
Q Consensus 542 ~~~~ 545 (549)
++.+
T Consensus 566 ~~~~ 569 (579)
T PRK09192 566 SGAF 569 (579)
T ss_pred cCCC
Confidence 8876
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=523.43 Aligned_cols=490 Identities=23% Similarity=0.328 Sum_probs=379.7
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECC-------CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSV-------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v 110 (549)
+++.+.|...+..+ |+++|+++.. ..+++||.||..+++++|++|++ .| .+||+|+++++|++++++
T Consensus 1 ~s~~~~l~~~a~~~----p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~-~g-~~gd~V~l~~~n~~~~~~ 74 (578)
T PRK05850 1 SSVPSLLRERASLQ----PDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRR-HG-STGDRAVILAPQGLEYIV 74 (578)
T ss_pred CcHHHHHHHHHhcC----CCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHH-hC-CCCCEEEEEcCCcccHHH
Confidence 36788889999888 9999998531 12689999999999999999998 88 689999999999999999
Q ss_pred HHHHHHHcCCeEccCCC---CCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-------CC-eEEEecCCchhhhhcccC
Q 008895 111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KH-RTILIDSPEFDSMTMSWN 179 (549)
Q Consensus 111 ~~la~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~ 179 (549)
++|||+++|++++|+++ ..+.+++.+++++++++++++++.....+... .. .++.++...+. ..
T Consensus 75 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 149 (578)
T PRK05850 75 AFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLD---SP-- 149 (578)
T ss_pred HHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccccc---cC--
Confidence 99999999999999997 45789999999999999999998766654321 11 12222211110 00
Q ss_pred CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC-C----CCCCCcEEEEecChhhHHHH-HHHH
Q 008895 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-P----KRVSPAVMLFTMPYFHIYGL-FFCF 253 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~----~~~~~~~~~~~~pl~~~~g~-~~~~ 253 (549)
. ........+++.++++|||||||.||+|.++|+++.++........ . ....++++++.+|++|.+|+ ...+
T Consensus 150 -~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~ 227 (578)
T PRK05850 150 -R-GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVC 227 (578)
T ss_pred -C-ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHH
Confidence 0 1111234568999999999999999999999999987765543322 1 13457899999999999998 5578
Q ss_pred HHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHH-HHhCCC---CCCCCCCCceEEEEecCCCCHHHHH
Q 008895 254 RAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVA-MSKGGS---TDGYDLSSLETVACGAAPLGKDTIM 325 (549)
Q Consensus 254 ~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~-l~~~~~---~~~~~l~~lr~v~~~Ge~l~~~~~~ 325 (549)
.++..|+++++..+ .++..+++.+.++++++. .+|+.+.. +..... .....++++|.+++||+++++++.+
T Consensus 228 ~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~ 306 (578)
T PRK05850 228 APILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLK 306 (578)
T ss_pred HHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHH
Confidence 89999999988864 268999999999999865 55655433 333221 1234578999999999999999999
Q ss_pred HHHHhCC-----CCcEEcccCccccccceecccCcCC-----------------------CCCCCccccccCCcEEEEEc
Q 008895 326 AFASKFP-----KVVLVQAYGLTESTAGVFRTVGPDE-----------------------CRRWGSTGRLSAGLEAKIVD 377 (549)
Q Consensus 326 ~~~~~~~-----~~~l~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~~~~~~~~~i~d 377 (549)
+|.+.|+ +..+.+.||+||++..+........ .....++|.|. +.+++++|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd 385 (578)
T PRK05850 307 RFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD 385 (578)
T ss_pred HHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc
Confidence 9998773 3468999999998754433211000 00112345543 57899999
Q ss_pred CCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC-----------CCeeecCceEEEecCCeEEEEcccCCeeee
Q 008895 378 PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-----------DGWMRTGDLCYIDEDGFLFIVDRLKDLIKY 446 (549)
Q Consensus 378 ~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-----------~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~ 446 (549)
++++.+++.|+.|||+|+|++++.||+++++.+.+.|.. ++||+|||+|+++ +|++++.||++|+||+
T Consensus 386 ~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~ 464 (578)
T PRK05850 386 PDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV 464 (578)
T ss_pred CCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE
Confidence 888899999999999999999999999999999988842 5799999999997 9999999999999999
Q ss_pred CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH------HHHHHHHHhcCCC--CCcccEEE
Q 008895 447 KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE------AEIMEFVARQVSP--YKKIRRVA 518 (549)
Q Consensus 447 ~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~------~~i~~~l~~~l~~--~~~p~~i~ 518 (549)
+|++|+|.+||++|.+||.+ +++|+++++. .++.++++|+.++....+. .++++++...+.. ...|..+.
T Consensus 465 ~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~~~ 542 (578)
T PRK05850 465 DGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVADLV 542 (578)
T ss_pred CCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceEEE
Confidence 99999999999999999985 5888888876 6788999998876543332 3455555554443 23466566
Q ss_pred Ee--CccCCCCCCcccHHHHHcccCcCCC
Q 008895 519 FI--NAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 519 ~v--~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
++ +.||+|++|||+|++|++++.++.+
T Consensus 543 ~~~~~~iP~t~~GKi~R~~l~~~~~~~~~ 571 (578)
T PRK05850 543 LVAPGSIPITTSGKIRRAACVEQYRQDEF 571 (578)
T ss_pred EeCCCCcCCCCCchHHHHHHHHHHHcCCc
Confidence 66 4899999999999999999988754
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-62 Score=485.17 Aligned_cols=496 Identities=24% Similarity=0.345 Sum_probs=396.7
Q ss_pred CCCCCHHHHHhhcccCCCCCCCCCcEEEECC------CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH
Q 008895 35 DAPISAVDYVSSLRATLPWRDDDTVALINSV------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (549)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~------~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~ 108 (549)
+...|+.+.|.+.+..+ |+.+++-.-. .-..+||+|..+++..++..|+. +|+++++.|+|+.-|++||
T Consensus 72 ~~~~T~~~~f~~~~~~~----~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~-lG~~~~~~VGIy~~N~pEW 146 (691)
T KOG1256|consen 72 DGPLTLYEGFRRSVEKS----GNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRK-LGVKEDSKVGIYAFNRPEW 146 (691)
T ss_pred CCcccHHHHhhcchhcc----CCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCceEEEeccCChhh
Confidence 34589999999999999 8888874321 12689999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEc-CccHHHHhcC-------CCe-EEEecCC----------
Q 008895 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFAT-SSVVHKLAKL-------KHR-TILIDSP---------- 169 (549)
Q Consensus 109 ~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~-~~~~~~~~~~-------~~~-~~~~~~~---------- 169 (549)
+++.+||...|.++||+..+++++.+.++++++++.+++++ +.....+.+. .++ ++.++..
T Consensus 147 iis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~ 226 (691)
T KOG1256|consen 147 IISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAEN 226 (691)
T ss_pred HHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhc
Confidence 99999999999999999999999999999999999999999 4444444321 122 3334322
Q ss_pred ------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHH---hhccCC--CCCCCcEEE
Q 008895 170 ------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS---SFASSP--KRVSPAVML 238 (549)
Q Consensus 170 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~---~~~~~~--~~~~~~~~~ 238 (549)
+|+++..............+.|++.|.|+|||||||.||||++||+|+++.+.. ...... .....|+++
T Consensus 227 ~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~l 306 (691)
T KOG1256|consen 227 NGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYL 306 (691)
T ss_pred CCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEE
Confidence 244544433211111114678899999999999999999999999999986543 222221 233469999
Q ss_pred EecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC----CC------------
Q 008895 239 FTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS----TD------------ 302 (549)
Q Consensus 239 ~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~----~~------------ 302 (549)
+.+||.|++....-...+..|+.+-+.+. |+..+.+.|+..+||.+.++|.+|..+-+... ..
T Consensus 307 SyLPLAHi~er~~~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~ 385 (691)
T KOG1256|consen 307 SYLPLAHIFERVVELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAM 385 (691)
T ss_pred EeCcHHHHHHHHHHHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999777777789999999874 88999999999999999999988754422110 00
Q ss_pred ----------CCCC-------------------CCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 303 ----------GYDL-------------------SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 303 ----------~~~l-------------------~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
+... ..+|.+++|++|+++++...++..+ ++++.++||+|||++.++...
T Consensus 386 ~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~ 464 (691)
T KOG1256|consen 386 AYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTL 464 (691)
T ss_pred HHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEecc
Confidence 0000 4789999999999999999999998 899999999999986666533
Q ss_pred CcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCe
Q 008895 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433 (549)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~ 433 (549)
.. +...+++|.|+|+++++++|+.+.+.-+.+..|||||+|+.++.||+++|+.|.+.++.|||+||||+|+++++|.
T Consensus 465 ~~--d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~ 542 (691)
T KOG1256|consen 465 PG--DNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGT 542 (691)
T ss_pred CC--CCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCcc
Confidence 22 2378999999999999999988888888888999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCCeeee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC--------C--------
Q 008895 434 LFIVDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL--------N-------- 496 (549)
Q Consensus 434 ~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~--------~-------- 496 (549)
+.++||++++||. .|++|.|..||++....+-|.+.+|.+-. ....++++|+++++... .
T Consensus 543 l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s---~~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~ 619 (691)
T KOG1256|consen 543 LKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDS---LRSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCR 619 (691)
T ss_pred EEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCc---chhcEEEEEecChhhchhhHHHccCchhHHHHhc
Confidence 9999999999999 89999999999999999999999998543 34688999998654211 0
Q ss_pred ----H----HHHHHHHH-hcCCCCCcccEEEEe------CccCCCCCCcccHHHHHcccCc
Q 008895 497 ----E----AEIMEFVA-RQVSPYKKIRRVAFI------NAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 497 ----~----~~i~~~l~-~~l~~~~~p~~i~~v------~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
. +|+.+.-+ +.|..+.....|.+. +.==+||+-|+.|..|.+.|.+
T Consensus 620 n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~ 680 (691)
T KOG1256|consen 620 NLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKK 680 (691)
T ss_pred ChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHH
Confidence 0 12222221 236667777767664 2222388899999999998854
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=490.78 Aligned_cols=436 Identities=27% Similarity=0.422 Sum_probs=369.9
Q ss_pred cHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 008895 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (549)
Q Consensus 71 Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (549)
||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+.+..++++.+++++++++
T Consensus 1 Ty~~l~~~~~~~a~~l~~-~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKA-QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDS 79 (436)
T ss_pred CHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcC
Confidence 899999999999999999 8999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCC
Q 008895 151 SVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~ 230 (549)
...... ... ..+.......... .........+++++++|||||||.||+|.++|+++..........+ .
T Consensus 80 ~~~~~~----~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~ 148 (436)
T TIGR01923 80 LLEEKD----FQA-----DSLDRIEAAGRYE-TSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL-G 148 (436)
T ss_pred cccccc----eee-----cchHhhhhccccc-ccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhc-C
Confidence 642211 000 0111111111100 1112234567899999999999999999999999998888777776 5
Q ss_pred CCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCce
Q 008895 231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310 (549)
Q Consensus 231 ~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr 310 (549)
..++++++..+|++|.+++...+.++..|+++++.+.+ ..+++.++++++|++.++|+++..+++.... .+++|
T Consensus 149 ~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~----~~~l~ 222 (436)
T TIGR01923 149 FTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLDEGGH----NENLR 222 (436)
T ss_pred CCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC----CCceE
Confidence 77889999999999999998888999999999998765 3999999999999999999999999886532 27899
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcc
Q 008895 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG 390 (549)
Q Consensus 311 ~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 390 (549)
.++++|+++++++.+++.+. +..+++.||+||++............ ...++|.|++++++++.+.+. ++.|
T Consensus 223 ~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~-~~~~~G~~~~~~~~~i~~~~~------~~~G 293 (436)
T TIGR01923 223 KILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLH-ARPDVGRPLAGREIKIKVDNK------EGHG 293 (436)
T ss_pred EEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccc-cccCCCccCCCcEEEEEeCCC------CCce
Confidence 99999999999999988775 88999999999998765543322222 223589999999999843222 2679
Q ss_pred eEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEE
Q 008895 391 ELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470 (549)
Q Consensus 391 el~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~ 470 (549)
||+++|+.++.||+++++.+...+ .++||+|||+|+++++|.+++.||.+|++|++|.+|++.+||++|.+++.|.+++
T Consensus 294 el~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 372 (436)
T TIGR01923 294 EIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAV 372 (436)
T ss_pred EEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEE
Confidence 999999999999999887776554 5799999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHH
Q 008895 471 VIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536 (549)
Q Consensus 471 vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l 536 (549)
|++.++...+..+.++++..+ ..+.+++.+++++.|+.+++|..++++++||+|++||++|++|
T Consensus 373 v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 373 VVPKPDAEWGQVPVAYIVSES--DISQAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred EeCCcchhcCCeeEEEEEECC--CCCHHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence 999887777788889988765 3678899999999999999999999999999999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-59 Score=474.23 Aligned_cols=407 Identities=20% Similarity=0.232 Sum_probs=353.9
Q ss_pred EEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhh
Q 008895 61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQL 140 (549)
Q Consensus 61 ~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~ 140 (549)
++.. ++++||.||.++++++|+.|. .++++|++|+++++|+++++++++|++++|++++|+++..+.+.+..++++
T Consensus 2 ~~~~--~~~~ty~el~~~~~~~a~~l~--~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~ 77 (414)
T PRK08308 2 LIVN--DEEYSKSDFDLRLQRYEEMEQ--FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKR 77 (414)
T ss_pred eEec--CceecHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHh
Confidence 4455 789999999999999999985 489999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHH
Q 008895 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220 (549)
Q Consensus 141 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~ 220 (549)
++++.+++++.... .. . .....++++++++|||||||.||+|.++|+++.++
T Consensus 78 ~~~~~~i~~~~~~~-----------~~---------~--------~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~ 129 (414)
T PRK08308 78 AGCHGLLYGESDFT-----------KL---------E--------AVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDRE 129 (414)
T ss_pred CCCCEEEecCcccc-----------cc---------c--------CCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHH
Confidence 99999998763110 00 0 01134678999999999999999999999999988
Q ss_pred HHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCC
Q 008895 221 VASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299 (549)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~ 299 (549)
.......+ ....+++.+..+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+..
T Consensus 130 ~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~ 208 (414)
T PRK08308 130 IEAYNEAL-NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLL 208 (414)
T ss_pred HHHHHHhh-CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcC
Confidence 87766665 35677899999999999998 56788999999999998889999999999999999999999999998764
Q ss_pred CCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCC
Q 008895 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPE 379 (549)
Q Consensus 300 ~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~ 379 (549)
.. ..+++.++++|+++++++.+++++. ..++++.||+||++.+.... .....+++|+|++++++++.+.
T Consensus 209 ~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~----~~~~~~~~G~p~~~~~~~~~~~- 277 (414)
T PRK08308 209 PG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICP----DMKSHLDLGNPLPHVSVSAGSD- 277 (414)
T ss_pred Cc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecC----CCCCCCccCccCCCeEEEEecC-
Confidence 32 2368899999999999999999987 56899999999998654321 1234568999999999998752
Q ss_pred CCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHH
Q 008895 380 TGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHL 459 (549)
Q Consensus 380 ~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~ 459 (549)
.++.|||++++ .++||+|||+|+++++|++++.||.||++|++|++|+|.+||++
T Consensus 278 ------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~ 332 (414)
T PRK08308 278 ------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDV 332 (414)
T ss_pred ------CCCCceEEEEc-------------------CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHH
Confidence 35679999974 26799999999999999999999999999999999999999999
Q ss_pred HHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHc
Q 008895 460 LLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538 (549)
Q Consensus 460 l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~ 538 (549)
+.++|+|.+++|++.++...++.++++++... ..+.++++++++++|+.+++|..++++++||+|++||++|+.|+.
T Consensus 333 l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~~ 409 (414)
T PRK08308 333 MLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLEL 409 (414)
T ss_pred HHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHHHHHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhhh
Confidence 99999999999999998888888888888654 467889999999999999999999999999999999999996543
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-59 Score=493.04 Aligned_cols=487 Identities=22% Similarity=0.320 Sum_probs=379.9
Q ss_pred CHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHc
Q 008895 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (549)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~ 118 (549)
++.+.+...+... |+.+++.+...++.+||.||+++++++|++|.+ .|+++||+|+++++|+++++++++||+++
T Consensus 3 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~-~g~~~gd~V~l~~~~~~~~~~~~la~~~~ 77 (545)
T PRK07768 3 RFTEKMYANARTS----PRGMVTGEPDAPVRHTWGEVHERARRIAGGLAA-AGVGPGDAVAVLAGAPVEIAPTAQGLWMR 77 (545)
T ss_pred hHHHHHHHHhhCC----CcceEEecCCCceEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHHc
Confidence 5778788888877 999999877667899999999999999999999 89999999999999999999999999999
Q ss_pred CCeEccCCCCCCHHHH-------HHHHhhcCCeEEEEcCccHHHHhcC---CCeEEEecCCchhhhhcccCCCccccccc
Q 008895 119 GVIISPANPVNTESEI-------SRQIQLSNPVIAFATSSVVHKLAKL---KHRTILIDSPEFDSMTMSWNSKHELDRAK 188 (549)
Q Consensus 119 G~~~v~l~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (549)
|++++++++..+.+++ ..+++.++++.+++++......... ...++ .++++..... .....
T Consensus 78 g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~~~~ 148 (545)
T PRK07768 78 GASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVL-----TVADLLAADP----IDPVE 148 (545)
T ss_pred CccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCcee-----ehhhhcccCC----CCcCC
Confidence 9999999987775443 4567778999999987654333221 11222 2222222111 11223
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCC-cEEEEecChhhHHHHH-HHHHHhhhccEEEEec
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQ 266 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~g~~-~~~~~l~~g~~~~~~~ 266 (549)
..++++++++|||||||.||+|+++|+++............ .... |++++.+|++|.+++. ..+.++..|++++...
T Consensus 149 ~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~ 227 (545)
T PRK07768 149 TGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAE-FDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT 227 (545)
T ss_pred CCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcC-CCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence 45789999999999999999999999999888877666663 4444 8999999999999984 4567788999988875
Q ss_pred C----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCC----CCCCCCCCCceEEEEecCCCCHHHHHHHHHh---C--CC
Q 008895 267 R----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG----STDGYDLSSLETVACGAAPLGKDTIMAFASK---F--PK 333 (549)
Q Consensus 267 ~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~----~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~---~--~~ 333 (549)
+ .++..+.+.+++++++++..+|..+..+.... .....+++++|.++++|+++++++.+++.+. + +.
T Consensus 228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~ 307 (545)
T PRK07768 228 PMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRP 307 (545)
T ss_pred HHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCc
Confidence 4 36788899999999999887777766655432 1223567899999999999999999999874 4 22
Q ss_pred CcEEcccCccccccceecccCcC------------------------CCCCCCccccccCCcEEEEEcCCCCCcCCCCCc
Q 008895 334 VVLVQAYGLTESTAGVFRTVGPD------------------------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE 389 (549)
Q Consensus 334 ~~l~~~yG~tE~~~~~~~~~~~~------------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 389 (549)
..+++.||+||++..+....... .....+++|+|+++++++++| +++++++.|+.
T Consensus 308 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~ 386 (545)
T PRK07768 308 EAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGV 386 (545)
T ss_pred ccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCE
Confidence 35899999999987654322110 011335789999999999999 77899999999
Q ss_pred ceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceE
Q 008895 390 GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA 469 (549)
Q Consensus 390 Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~ 469 (549)
|||+++|+.++.||++.+.... .+..++||+|||+|+++++|.++++||.+|++|++|++|++.+||++|.++|+|.++
T Consensus 387 Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~ 465 (545)
T PRK07768 387 GVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPG 465 (545)
T ss_pred EEEEEccCcccccccCCCCCcc-cccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccc
Confidence 9999999999999998654433 334578999999999999999999999999999999999999999999999999998
Q ss_pred EEEeec--CCCCCceeEEEEEeCCCCC-CCHHHHHHHHHhcCCCC--CcccEEEEeC--ccCCCCCCcccHHHHHcccCc
Q 008895 470 AVIPYP--DEEAGQMPMAFVVRQPHSS-LNEAEIMEFVARQVSPY--KKIRRVAFIN--AIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 470 ~vv~~~--~~~~~~~~~~~v~~~~~~~-~~~~~i~~~l~~~l~~~--~~p~~i~~v~--~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+|+++. +...++..++++....... ....++.+.+++.+... .+|..+.+++ .||+|++||++|+.|+++++.
T Consensus 466 ~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~~ 545 (545)
T PRK07768 466 NAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVTP 545 (545)
T ss_pred eEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcCC
Confidence 877664 3333445455544432211 12235666777665543 5787788875 899999999999999998863
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-57 Score=432.37 Aligned_cols=492 Identities=25% Similarity=0.312 Sum_probs=392.2
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEE-----EC-----CCC-----------ceecHHHHHHHHHHHHHHhHHhcCCCCCC
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALI-----NS-----VTG-----------LRVSFSEFTRRTNSLASYLQNVTRLSKND 96 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~-----~~-----~~~-----------~~~Ty~el~~~a~~~A~~L~~~~g~~~g~ 96 (549)
.|+.+++...++++ .++.++- .. .+| ..+||.|+..++..+|++|.+ +|+++++
T Consensus 41 ~Tl~~~~~~~~~k~----g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~-lG~k~~e 115 (678)
T KOG1180|consen 41 STLYELFEECVKKF----GKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVK-LGLKPKE 115 (678)
T ss_pred ccHHHHHHHHHHhc----CCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence 68999999999888 6666642 00 112 568999999999999999999 9999887
Q ss_pred E-EEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCe-EEEecCC
Q 008895 97 T-AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDSP 169 (549)
Q Consensus 97 ~-V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~ 169 (549)
. |+|+++.+.+|+.+++||++-+...|-+..++..+.+.+-|.+++++.|+|+.+.+..+... .+. +|.++..
T Consensus 116 ~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~i 195 (678)
T KOG1180|consen 116 TKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFDPI 195 (678)
T ss_pred CeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEecCC
Confidence 7 99999999999999999999999999999999999999999999999999999988765422 112 3444421
Q ss_pred --------------------chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCC
Q 008895 170 --------------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP 229 (549)
Q Consensus 170 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~ 229 (549)
+++++....... ...+..+.|+|+|+|||||||||.||||+++|.|+++.+.......+
T Consensus 196 d~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~-~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~ 274 (678)
T KOG1180|consen 196 DYDAAKDDVNSIVRPDIKIISFDDVEKLGKEN-EIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVP 274 (678)
T ss_pred CCccchhhhhhhccCCeEEEEHHHHHhhCCcC-CCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCc
Confidence 122222222111 12233347899999999999999999999999999999999988888
Q ss_pred CCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHH--------HHHHHHhceeeeeecHHHHHHHHhCCCC
Q 008895 230 KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMM--------LKAVEEFRVTHAAVTPPIVVAMSKGGST 301 (549)
Q Consensus 230 ~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~--------~~~l~~~~~t~l~~~P~~l~~l~~~~~~ 301 (549)
...+.|+++..+||.|++-+.+-+.++..|+.+-...+.....- --.+...|||.+.++|..+.++.+.-..
T Consensus 275 ~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~ 354 (678)
T KOG1180|consen 275 ELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLS 354 (678)
T ss_pred ccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999999888899999998887654222111 1234568999999999887655432110
Q ss_pred C--------------------------CCC---C-------------CCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 302 D--------------------------GYD---L-------------SSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 302 ~--------------------------~~~---l-------------~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+ ... + .+||.+++||+|++++..+.+.-.+ .+++.++
T Consensus 355 kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qG 433 (678)
T KOG1180|consen 355 KVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQG 433 (678)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-ccccccc
Confidence 0 000 0 3899999999999999999999888 7799999
Q ss_pred cCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCC--cceEEEecCCcccccCCCccccccccCC-
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK--EGELSIRGPTIMKGYVGEPEVTSATLLP- 416 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~--~Gel~v~g~~~~~gy~~~~~~~~~~~~~- 416 (549)
||.||++..++.. ...+...+.+|.|++-++++++|-+++.-.+.+. .|||+++|++++.||+++++.|.+.|..
T Consensus 434 YGLTEtca~~tv~--e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~ 511 (678)
T KOG1180|consen 434 YGLTETCAAATVL--EPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVE 511 (678)
T ss_pred ccccchhcccEec--ChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceec
Confidence 9999999877763 3445567899999999999999977776555554 7999999999999999999999999988
Q ss_pred CC--eeecCceEEEecCCeEEEEcccCCeeee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC
Q 008895 417 DG--WMRTGDLCYIDEDGFLFIVDRLKDLIKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS 493 (549)
Q Consensus 417 ~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~ 493 (549)
+| ||+|||+|++.+||.+.+++|++|.+|. +|+.|++.-+|++++..|-|.+.||.+.+. ...++++|++....
T Consensus 512 ~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~---~s~~VaiVVPn~~~ 588 (678)
T KOG1180|consen 512 DGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSN---KSKPVAIVVPNQKH 588 (678)
T ss_pred CCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccc---cceeEEEEcCCchH
Confidence 88 9999999999999999999999999999 999999999999999999999999996543 45899999986531
Q ss_pred --------CC---CH----------HHHHHHH-----HhcCCCCCcccEEEEeCccCCCC-------CCcccHHHHHccc
Q 008895 494 --------SL---NE----------AEIMEFV-----ARQVSPYKKIRRVAFINAIPKSA-------AGKILRMELRKVA 540 (549)
Q Consensus 494 --------~~---~~----------~~i~~~l-----~~~l~~~~~p~~i~~v~~lP~t~-------~GKv~r~~l~~~~ 540 (549)
.. +- +++.+.| ..+|..+.+|..|++. +.|-|| .-|+.|+.++..|
T Consensus 589 lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~-~e~WTPenGlvT~A~KLKRk~I~~~~ 667 (678)
T KOG1180|consen 589 LTKLAEKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLS-PEPWTPENGLVTAALKLKRKEILAAY 667 (678)
T ss_pred HHHHHHHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEec-CCCcCCCccccHHHHHhhHHHHHHHH
Confidence 00 10 1222222 3368899999988885 445555 4489999988776
Q ss_pred Cc
Q 008895 541 VP 542 (549)
Q Consensus 541 ~~ 542 (549)
.+
T Consensus 668 k~ 669 (678)
T KOG1180|consen 668 KK 669 (678)
T ss_pred HH
Confidence 43
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=465.86 Aligned_cols=393 Identities=33% Similarity=0.519 Sum_probs=322.1
Q ss_pred HhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEc
Q 008895 44 VSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123 (549)
Q Consensus 44 ~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v 123 (549)
|.++|+++ ||++|+++ ..++.+||+||+++++++|..|.+ +|+++|++|+++++|+++++++++||+++|++++
T Consensus 1 f~~~a~~~----pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v 74 (417)
T PF00501_consen 1 FERQAQRY----PDRIALID-DEGRSLTYKQLYERVRKLAAALRK-LGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPV 74 (417)
T ss_dssp HHHHHHHS----TTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHH-TTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEE
T ss_pred ChhHHhhC----CCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHH-hCCCccccccccCCccceeeeeeccccccccccc
Confidence 45678888 99999999 338999999999999999999997 9999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeEEEE----cCccHHHHh---c-C--CCeEEEecCCchh---hhhcccCCCccccccc-c
Q 008895 124 PANPVNTESEISRQIQLSNPVIAFA----TSSVVHKLA---K-L--KHRTILIDSPEFD---SMTMSWNSKHELDRAK-V 189 (549)
Q Consensus 124 ~l~~~~~~~~l~~~l~~~~~~~ii~----~~~~~~~~~---~-~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~ 189 (549)
|++|.++.+++.++++.++++++|+ +......+. . . ....+.++...+. .+....... ... .. .
T Consensus 75 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 152 (417)
T PF00501_consen 75 PLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLSD-EPQ-SPED 152 (417)
T ss_dssp EEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHCH-CSH-STTH
T ss_pred ccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccccccccccccc-ccc-cCCC
Confidence 9999999999999999999999997 222222221 1 1 1124444422211 111110000 000 00 1
Q ss_pred CCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhh--ccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEec
Q 008895 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF--ASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ 266 (549)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~ 266 (549)
.++++++++|||||||.||+|.++|+++.+.+.... ... ... +++++.+|++|.+|+ ...+.++..|+++++.+
T Consensus 153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (417)
T PF00501_consen 153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-GLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPS 229 (417)
T ss_dssp TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-TTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEES
T ss_pred CccceeEeecccccccccccccccccccccccccccccccc-ccC--ceEEeeccccccccccccccccccccccccccc
Confidence 568999999999999999999999999999877754 222 222 599999999999999 88999999999999998
Q ss_pred CcC---HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCC----CCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 267 RFD---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD----GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 267 ~~~---~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~----~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
... ++.+++.++++++|+++++|+++..+++..... ...++++|.++++|+++++++.+++++.++...+.+.
T Consensus 230 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~ 309 (417)
T PF00501_consen 230 PFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINL 309 (417)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEE
T ss_pred cccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceec
Confidence 654 477899999999999999999999998832222 3568889999999999999999999999965699999
Q ss_pred cCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 419 (549)
||+||++.+++...........+++|.|+++++++|+|+++++++++|+.|||+|+|++++.||+++++.+...|..+||
T Consensus 310 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~ 389 (417)
T PF00501_consen 310 YGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGW 389 (417)
T ss_dssp EEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSE
T ss_pred ccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccc
Confidence 99999999887543233334667899999999999999888999999999999999999999999999999999976689
Q ss_pred eecCceEEEecCCeEEEEcccCCeeeeC
Q 008895 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYK 447 (549)
Q Consensus 420 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~ 447 (549)
|+|||+|++|++|++++.||.||+||++
T Consensus 390 ~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 390 YRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp EEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred eecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 9999999999999999999999999974
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=417.13 Aligned_cols=491 Identities=22% Similarity=0.290 Sum_probs=405.6
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
..++.+.|.++++++ |+++|+++.+..+.+||+|+.++++++|+.|.. .|++.||.|+++|+|.++++..+||++
T Consensus 76 ~~ti~~~F~~~vrr~----p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~-~~l~~GD~VAL~men~pefv~lWlGLa 150 (649)
T KOG1179|consen 76 RRTIAELFLSQVRRQ----PDKPAIIYEGPFQSLTFAELDARSNRVANYLHA-EGLKAGDVVALLMENRPEFVALWLGLA 150 (649)
T ss_pred CCcHHHHHHHHHHhC----CCccEEEEeCCCceeeHHHHHHHHHHHHHHHHH-hhcccCCEEEEecCCChhHHHHHHhHH
Confidence 479999999999999 999999998667899999999999999999999 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-------CCeEEEecCC----chhhhhcccCCCcc--
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHRTILIDSP----EFDSMTMSWNSKHE-- 183 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~-- 183 (549)
++|++...||++...+.|.|.+..++++.+|++.+....+.+. +......+.. ..+++.........
T Consensus 151 KlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 230 (649)
T KOG1179|consen 151 KLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHP 230 (649)
T ss_pred hhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCC
Confidence 9999999999999999999999999999999999887665543 2222222211 13333222111111
Q ss_pred ---ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhc
Q 008895 184 ---LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALM 259 (549)
Q Consensus 184 ---~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g 259 (549)
......+-.++++.+|||||||.||+.+++|.............+ ++..+|+++..+|++|.++. ..+..++..|
T Consensus 231 vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~G 309 (649)
T KOG1179|consen 231 VPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-GMTADDVVYTTLPLYHSAAGILGIGGCLLHG 309 (649)
T ss_pred CCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEcchhHHHHHHHHHHHHHHhcC
Confidence 112233456789999999999999999999999988777666666 68999999999999999888 7788999999
Q ss_pred cEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+++++-.+|+...+|+.+.++++|++...--+.+-|++.+.....+-+++|..+ |..+.+++++.|.+.|+..++.+.
T Consensus 310 aT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~ 387 (649)
T KOG1179|consen 310 ATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEF 387 (649)
T ss_pred ceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEE
Confidence 999999999999999999999999999999999999998877666677888776 888999999999999977789999
Q ss_pred cCccccccceecccCcCCCCCCCcccc------ccCCcEEEEEcCCCCC----------cCCCCCcceEEEe--cCCc--
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGR------LSAGLEAKIVDPETGD----------SLPPGKEGELSIR--GPTI-- 399 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~------~~~~~~~~i~d~~~~~----------~~~~g~~Gel~v~--g~~~-- 399 (549)
||+||......+..+ +.|.+|. -+--+++--+|+++++ +|++|+.|.++-+ ....
T Consensus 388 YgaTEgn~~~~N~d~-----~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~ 462 (649)
T KOG1179|consen 388 YGATEGNSNLVNYDG-----RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLR 462 (649)
T ss_pred eccccCcceeeeecC-----ccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchh
Confidence 999998765554321 2233322 1111233334556653 6788999977432 3333
Q ss_pred -ccccCCCccccccccCC------CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEE
Q 008895 400 -MKGYVGEPEVTSATLLP------DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472 (549)
Q Consensus 400 -~~gy~~~~~~~~~~~~~------~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv 472 (549)
+.||.++.+.+...... |-||.|||+-.+|+.|++|+.+|.-|.+...|+||+..|||.+|....+++|+.|+
T Consensus 463 ~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VY 542 (649)
T KOG1179|consen 463 SFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVY 542 (649)
T ss_pred hhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEE
Confidence 88999977777666432 34999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCc-eeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 473 PYPDEEAGQ-MPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 473 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
|+.-+..+. .=.|.|+.++....+.+.+-.++++.||+|.+|.++.+.++|++|.+-|..+..|.+.-
T Consensus 543 GV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~eg 611 (649)
T KOG1179|consen 543 GVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKEG 611 (649)
T ss_pred EEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHcc
Confidence 998765543 33466667887888999999999999999999999999999999999999999998765
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=435.12 Aligned_cols=394 Identities=27% Similarity=0.354 Sum_probs=334.8
Q ss_pred cHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 008895 71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS 150 (549)
Q Consensus 71 Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 150 (549)
||.||.+.++++|+.|.+..|+++||+|+++++|+++++++++||+++|++++|+++..+.+.+..+++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 89999999999999999757999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCC
Q 008895 151 SVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230 (549)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~ 230 (549)
.....+.......+.+...... ...... ...........+++++++|||||||.||+|.++|+++..........+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~-~ 157 (408)
T TIGR01733 81 ALASRLAGLVLPIILVDPLELA-ALDDAP-APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRY-G 157 (408)
T ss_pred chhhhccccCCceEEechhhhh-hccccc-ccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhc-C
Confidence 8777665443333333221111 111100 001111113468899999999999999999999999998888877766 4
Q ss_pred CCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcC---HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCC
Q 008895 231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307 (549)
Q Consensus 231 ~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~---~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~ 307 (549)
....+++++..|++|.+++...+.++..|+++++.+... +..+.+.++++++|.+.++|.++..+.+... ..++
T Consensus 158 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~---~~~~ 234 (408)
T TIGR01733 158 LDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP---PALA 234 (408)
T ss_pred CCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---hccc
Confidence 667899999999999999998999999999999887543 5889999999999999999999999988764 4578
Q ss_pred CceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCc-CCCC--CCCccccccCCcEEEEEcCCCCCcC
Q 008895 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP-DECR--RWGSTGRLSAGLEAKIVDPETGDSL 384 (549)
Q Consensus 308 ~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~-~~~~--~~~~~G~~~~~~~~~i~d~~~~~~~ 384 (549)
++|.+++||+++++++++.+.+.++++.+.+.||+||++.++...... .... ...++|.|+++++++|+|++ ++.+
T Consensus 235 ~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~ 313 (408)
T TIGR01733 235 SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPV 313 (408)
T ss_pred CceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCC-CCCC
Confidence 999999999999999999999999668999999999998876532211 1111 26789999999999999965 8999
Q ss_pred CCCCcceEEEecCCcccccCCCccccccccCCC------C--eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHH
Q 008895 385 PPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD------G--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAEL 456 (549)
Q Consensus 385 ~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~------~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~I 456 (549)
+.|+.|||+++|++++.||+++++.+...|..+ + ||+|||+|++|++|.+++.||.+|+++.+|++++|.+|
T Consensus 314 ~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~i 393 (408)
T TIGR01733 314 PVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEI 393 (408)
T ss_pred CCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHH
Confidence 999999999999999999999999888777543 2 99999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcceEEE
Q 008895 457 EHLLLSHREVADAAV 471 (549)
Q Consensus 457 E~~l~~~~~v~~~~v 471 (549)
|++|..++.|.+++|
T Consensus 394 e~~l~~~~~v~~~~v 408 (408)
T TIGR01733 394 EAALLRHPGVREAVV 408 (408)
T ss_pred HHHHhcCcchhhhcC
Confidence 999999999998865
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=398.00 Aligned_cols=322 Identities=29% Similarity=0.436 Sum_probs=281.1
Q ss_pred ccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEe--
Q 008895 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM-- 265 (549)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~-- 265 (549)
...++++++++|||||||.||+|.++|+++..........+ ...++++..+|++|.+++...+.++..|++.+..
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCc
Confidence 34568999999999999999999999999988887665544 3456888999999999998788888899988873
Q ss_pred -cCcCHHHHHHHHHHhc--eeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCc
Q 008895 266 -QRFDLKMMLKAVEEFR--VTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (549)
Q Consensus 266 -~~~~~~~~~~~l~~~~--~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~ 342 (549)
..+++..+++.+++++ .++...+|..+..++.... ....+.++|.+++||+++++++.+++.+. ++++++.||+
T Consensus 108 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~ 184 (358)
T PRK07824 108 SAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGM 184 (358)
T ss_pred CCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccC
Confidence 3578999999999998 5666778888877766443 22457899999999999999999998864 7899999999
Q ss_pred cccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeec
Q 008895 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (549)
Q Consensus 343 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 422 (549)
||++..+. ..|.|++++++++.+ |||+++|+.++.||+++++.+ .|..+|||+|
T Consensus 185 TE~~~~~~------------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~T 238 (358)
T PRK07824 185 SETSGGCV------------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRT 238 (358)
T ss_pred CccCCCcC------------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCCceec
Confidence 99875322 358899999999854 999999999999999988753 3556789999
Q ss_pred CceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 008895 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIME 502 (549)
Q Consensus 423 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~ 502 (549)
||+|++ ++|.+++.||.||+||++|++|+|.+||++|.++|+|.+|+|++.++...++.++++++.......+.++|++
T Consensus 239 GDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~ 317 (358)
T PRK07824 239 DDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRA 317 (358)
T ss_pred ccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHH
Confidence 999999 8999999999999999999999999999999999999999999999888889999999877666678899999
Q ss_pred HHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 503 FVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 503 ~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++++.|+.+++|..|+++++||+|++||++|++|++++.+
T Consensus 318 ~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 318 HVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred HHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 9999999999999999999999999999999999999865
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=404.87 Aligned_cols=455 Identities=17% Similarity=0.141 Sum_probs=337.7
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEEC---CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la 114 (549)
.|+.+++.+.++++ |+++|+... ...+.+||+|+.++++++|.+|.+ +|+++||+|+|+++|+++|+++++|
T Consensus 427 ~Tl~dll~~~a~~~----pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~-lGV~~GDrVaIls~N~~Ewvia~lA 501 (1452)
T PTZ00297 427 RSLGEMWERSVTRH----STFRCLGQTSESGESEWLTYGTVDARARELGSGLLA-LGVRPGDVIGVDCEASRNIVILEVA 501 (1452)
T ss_pred CCHHHHHHHHHHHC----CCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 68999999999999 999998631 122689999999999999999999 9999999999999999999999999
Q ss_pred HHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC---CC-eEEEecCC-----------------chhh
Q 008895 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL---KH-RTILIDSP-----------------EFDS 173 (549)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~-~~~~~~~~-----------------~~~~ 173 (549)
|+.+|+++||+.+ +.+++.+++++++++++|++......+.+. .+ .++.++.. .|++
T Consensus 502 ~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ 579 (1452)
T PTZ00297 502 CALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEF 579 (1452)
T ss_pred HHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHH
Confidence 9999999999975 467899999999999999998777665432 22 24444321 1333
Q ss_pred hhcccCCCccccccccCCCCEEEEEc---cCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCCcEEEEecChhhHHH
Q 008895 174 MTMSWNSKHELDRAKVCQSDVAAIMY---SSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYG 248 (549)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~a~i~~---TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~~pl~~~~g 248 (549)
+................+++++.|+| ||||||.||||++||+++++++....... +...+.|++++.+|++|+++
T Consensus 580 ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~e 659 (1452)
T PTZ00297 580 VEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFN 659 (1452)
T ss_pred HHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHH
Confidence 33322111111122346788998885 99999999999999999999988765432 23456799999999999999
Q ss_pred HHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCC-------------------------C
Q 008895 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD-------------------------G 303 (549)
Q Consensus 249 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~-------------------------~ 303 (549)
....+.++..|+++.. +++..+++.|++++||+++++|.++..+.+....+ +
T Consensus 660 r~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g 736 (1452)
T PTZ00297 660 RVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIH 736 (1452)
T ss_pred HHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 8777888899988864 47899999999999999999999987664322100 0
Q ss_pred CC----------------C-CCceEEEEecC--CCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCcc
Q 008895 304 YD----------------L-SSLETVACGAA--PLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364 (549)
Q Consensus 304 ~~----------------l-~~lr~v~~~Ge--~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~ 364 (549)
.. + .++|.+++||. +++..+. . ++.+...||+||+. ... . ..... ..
T Consensus 737 ~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~-----~--~i~i~~g~glTE~~--~~~--~-~~~~~--~~ 802 (1452)
T PTZ00297 737 RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL-----E--HISVCYVPCLREVF--FLP--S-EGVFC--VD 802 (1452)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh-----C--CceEEEecceEEee--eec--C-CCCcc--cC
Confidence 00 0 36888888873 5553332 2 46788899999943 111 1 11112 23
Q ss_pred ccccCCcEEEEEcC-CCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCe
Q 008895 365 GRLSAGLEAKIVDP-ETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL 443 (549)
Q Consensus 365 G~~~~~~~~~i~d~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ 443 (549)
|.|+|+++++|.+. +.+. .+..|||+++ |+++|+.|.+.+ +||+ +||+++|+||+||+
T Consensus 803 G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG~L~IidRkKdl 861 (1452)
T PTZ00297 803 GTPAPSLQVDLEPFDEPSD---GAGIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDRTLRLLGPPLGI 861 (1452)
T ss_pred CeecCceEEEEcccccccC---CCCCCeEEEE-------ECCChHHHHHhh--CcCc---------cCCeEEEEeccccc
Confidence 99999999999873 3222 1236999995 457888887642 5664 69999999999999
Q ss_pred eee-CcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCC-------------------CCHHH----
Q 008895 444 IKY-KGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS-------------------LNEAE---- 499 (549)
Q Consensus 444 i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~-------------------~~~~~---- 499 (549)
||. +|++|.|..||+++.++|.|.+++|++.+.. .++|+|++....- .+.++
T Consensus 862 ikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~ 937 (1452)
T PTZ00297 862 LLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAY 937 (1452)
T ss_pred eECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHh
Confidence 999 9999999999999999999999999975432 3788888753110 12222
Q ss_pred ----HHHHH---H--hcCCCCCcccEEEEe-Ccc-----CCCCCCcccHHHHHcccC
Q 008895 500 ----IMEFV---A--RQVSPYKKIRRVAFI-NAI-----PKSAAGKILRMELRKVAV 541 (549)
Q Consensus 500 ----i~~~l---~--~~l~~~~~p~~i~~v-~~l-----P~t~~GKv~r~~l~~~~~ 541 (549)
+.+.+ . .++..+.+++.+.++ +++ -+||+.|+.|+.+.+.|.
T Consensus 938 ~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~ 994 (1452)
T PTZ00297 938 ASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFS 994 (1452)
T ss_pred HHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHH
Confidence 33332 1 125667788766665 455 469999999999988774
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=374.07 Aligned_cols=410 Identities=22% Similarity=0.275 Sum_probs=342.7
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|...+... |+++|+... +..+||.+|..+++++|+.|.+ .|+.++++|+++++.+.+++++++|+++
T Consensus 227 ~~i~~~f~~~a~~~----p~~~a~~~~--~~~lty~el~~~a~~la~~l~~-~g~~~~~~V~i~~~rs~~~i~~~l~ilk 299 (642)
T COG1020 227 LTIHLLFEEQAATT----PDAVALVRG--GQQLTYAELDARANRLARLLIS-LGVGPGETVAILADRSLELVVALLAVLK 299 (642)
T ss_pred chHHHHHHHHHHhC----CCceeEecC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCCHHHHHHHHHHHh
Confidence 57999999999999 999999887 7899999999999999999998 8999999999999889999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|+.++|++|.++.+++..+++..++..+++............. +.++..... .. ...+......+++.+|+
T Consensus 300 aG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~-~~~~~~~~~~~~~~ayi 371 (642)
T COG1020 300 AGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--LALDDALSE-----IP-DTDPIPQALLGDALAYI 371 (642)
T ss_pred cCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--ccccccccc-----CC-ccCcccccCCCCCeEEE
Confidence 99999999999999999999999999999998443221111111 111111110 00 00111223455889999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~~~ 274 (549)
+|||||||.||||..+|+++.+...+....+ .....|+++...++.+....+..+.++..|+.++.... .++..+.
T Consensus 372 iytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~ 450 (642)
T COG1020 372 IYTSGSTGQPKGVRIEHRALANLLNDAGARF-GLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALL 450 (642)
T ss_pred EEccCCCCCCCCceecCHHHHHHHHHHHHhc-CCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHH
Confidence 9999999999999999999999777776665 56777899988888777788899999999999999864 6889999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCC--CCCCCCceEEEEecCCCCHHHHHHHHHhCC-CCcEEcccCccccccceec
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFR 351 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~-~~~l~~~yG~tE~~~~~~~ 351 (549)
+.+.++++|.+..+|.++..++...... ......+|.+++||+.++.++...+....+ ...+.+.||+||+......
T Consensus 451 ~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~ 530 (642)
T COG1020 451 ELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPS 530 (642)
T ss_pred HHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheee
Confidence 9999999999999999999888763221 122345999999999999999999988764 4689999999996655443
Q ss_pred ccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecC
Q 008895 352 TVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED 431 (549)
Q Consensus 352 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~ 431 (549)
............+|+|++|.+++|+| +.+++++.|..||+++.|.+++.||+++++.+...|..+.+|+|||++++..+
T Consensus 531 ~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~d 609 (642)
T COG1020 531 FPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLAD 609 (642)
T ss_pred EEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCC
Confidence 32222221146899999999999999 88999999999999999999999999999999999976569999999999999
Q ss_pred CeEEEEcccCCeeeeCcEeeChHHHHHHHHcCC
Q 008895 432 GFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHR 464 (549)
Q Consensus 432 g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~ 464 (549)
|.+.+.||.|+++|++|++|.+.+||..+.++|
T Consensus 610 g~~e~lgr~D~qvki~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 610 GALEYLGRKDSQVKIRGFRIELGEIEAALAEQP 642 (642)
T ss_pred CeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence 999999999999999999999999999998765
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=327.18 Aligned_cols=288 Identities=22% Similarity=0.240 Sum_probs=231.7
Q ss_pred CCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCC-CCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcC
Q 008895 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFD 269 (549)
Q Consensus 192 ~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~ 269 (549)
+..++++|||||||.||+|.++|+++.+........+.. ....+++++.+|++|.+|+ +..+.++..|++++....++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 558899999999999999999999998877766555521 1334689999999999987 56678888999999988888
Q ss_pred HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccce
Q 008895 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (549)
Q Consensus 270 ~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~ 349 (549)
+..+++.++.. |+++++|+++..+.+.. ..+++++. ++||+++++++++.+.+. +...+++.||+||++.++
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~ 246 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIG 246 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccc
Confidence 88888887643 88999999999987643 34667775 688999999999999886 334689999999998754
Q ss_pred ecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEe
Q 008895 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (549)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~ 429 (549)
... ..+..|++.|+.++.+ + ++. + .| +..|++|||++++|
T Consensus 247 ~~~-------~~~~~~~~~p~~~~~~-~--~~~--------~---~g-------------------~~~~~~tgD~g~~d 286 (386)
T TIGR02372 247 LRE-------APDDPFRLLPDLACFA-D--TLS--------S---AG-------------------LARRLDLQDRLAWD 286 (386)
T ss_pred ccc-------CCCCCcccCCCccccC-C--Ccc--------C---CC-------------------ccceeecCceEEEc
Confidence 431 1224567777766543 1 110 0 01 12368999999999
Q ss_pred cCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCC--HHHHHHHHHhc
Q 008895 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLN--EAEIMEFVARQ 507 (549)
Q Consensus 430 ~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~--~~~i~~~l~~~ 507 (549)
++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|+. .++.+.++|++.+....+ .+++.++++++
T Consensus 287 ~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~ 361 (386)
T TIGR02372 287 KDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAELEIELRATAARH 361 (386)
T ss_pred CCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998862 356888999887543332 46899999999
Q ss_pred CCCCCcccEEEEeCccCCCCCCccc
Q 008895 508 VSPYKKIRRVAFINAIPKSAAGKIL 532 (549)
Q Consensus 508 l~~~~~p~~i~~v~~lP~t~~GKv~ 532 (549)
|+.|++|..+.++++||+|++||++
T Consensus 362 L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 362 LPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred CCCCCCCcEEEEcccCCCCCCCCcC
Confidence 9999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=318.32 Aligned_cols=322 Identities=24% Similarity=0.280 Sum_probs=238.9
Q ss_pred CCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHh---hccCCCCCCCcEEEEecChhhH-HHHHHHHHHhhhccEEEEe
Q 008895 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMPYFHI-YGLFFCFRAAALMETAVVM 265 (549)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~~~~~~pl~~~-~g~~~~~~~l~~g~~~~~~ 265 (549)
..++.+++++||||||.||++.++|.++..+.... ...+ +..++|++++..+..+. .++...+.+...|++++..
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA-GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc-CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 34578889999999999999999999987654332 2223 45677888776554332 2333455677789999888
Q ss_pred cCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCC--CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcc
Q 008895 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (549)
Q Consensus 266 ~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~t 343 (549)
...+++.+++.|+++++|+++++|+++..|++.....+.+ ..++|.++++||++++++++.+.+.| ++.+++.||+|
T Consensus 152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~t 230 (422)
T TIGR02155 152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLS 230 (422)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccch
Confidence 7777899999999999999999999999888654333322 35899999999999999999999999 78999999999
Q ss_pred cccc-ceecccCcCCCCCCCcccccc--CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCee
Q 008895 344 ESTA-GVFRTVGPDECRRWGSTGRLS--AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM 420 (549)
Q Consensus 344 E~~~-~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~ 420 (549)
|++. ..... ... .. .|.++ ++..++|+|+++++++++|+.|||++++.. ...+ +.+||
T Consensus 231 E~~~~~~~~~-~~~--~~---~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~------------~~~~-p~~ry 291 (422)
T TIGR02155 231 EVIGPGVAME-CVE--TQ---DGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLT------------KEAL-PVIRY 291 (422)
T ss_pred hhcCCceeec-ccc--cC---CCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCC------------cccc-ceeeE
Confidence 9852 22211 100 01 12223 356788999889999999999999998742 2233 56899
Q ss_pred ecCceEEEecC-C-----eEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCC
Q 008895 421 RTGDLCYIDED-G-----FLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS 494 (549)
Q Consensus 421 ~TGD~~~~~~~-g-----~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~ 494 (549)
+|||+++++++ | .+++.||.+|+|+++|.+|+|.+||.+|.++|+|...+.+........+.+.++|+..++..
T Consensus 292 ~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~ 371 (422)
T TIGR02155 292 RTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESY 371 (422)
T ss_pred EcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcc
Confidence 99999999876 4 46899999999999999999999999999999998444444444444456677766654321
Q ss_pred -CC--------HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHH
Q 008895 495 -LN--------EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRM 534 (549)
Q Consensus 495 -~~--------~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~ 534 (549)
.. .++|.+++++.+..+.. ..++.+++||+|+ ||++|.
T Consensus 372 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 372 TLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred cccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 11 35678888887776632 1233347999988 999874
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=279.46 Aligned_cols=498 Identities=17% Similarity=0.247 Sum_probs=355.8
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
.++.+++..+++++ |+.+|+..- .+..++||.+|.++|.+++.+|+.+..+++||+|++++++++|++++++
T Consensus 770 ~~ile~Lq~R~a~t----p~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~ 845 (1363)
T KOG3628|consen 770 LTILEILQWRAAKT----PDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIY 845 (1363)
T ss_pred HHHHHHHHHHhhcC----CCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHH
Confidence 68999999999999 999999753 3357999999999999999999997889999999999999999999999
Q ss_pred HHHHcCCeEccCCCC------CCHHHHHHHHhhcCCeEEEEcCccHHHHhcC------C--CeEEEecCCchhhhhcc-c
Q 008895 114 SLLSLGVIISPANPV------NTESEISRQIQLSNPVIAFATSSVVHKLAKL------K--HRTILIDSPEFDSMTMS-W 178 (549)
Q Consensus 114 a~~~~G~~~v~l~~~------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~-~ 178 (549)
||+.+|.+++|+.|- .+...+..+++..++..|+++......+... + .....++.+++..-... .
T Consensus 846 ~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~ 925 (1363)
T KOG3628|consen 846 ACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRK 925 (1363)
T ss_pred HHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhh
Confidence 999999999999873 4577889999999999999998776655421 1 00111111111110000 0
Q ss_pred ----CCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHH
Q 008895 179 ----NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR 254 (549)
Q Consensus 179 ----~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~ 254 (549)
.......+....++.+|++-+.--++|.--++.++|..+++.+....+......+...+.+..|...+..+.+++.
T Consensus 926 ~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLl 1005 (1363)
T KOG3628|consen 926 KNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLL 1005 (1363)
T ss_pred hhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHH
Confidence 0011112233456889999998889999999999999999999999888865566666666555555444488899
Q ss_pred HhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCC------ceEEEEecCCCCHHHH
Q 008895 255 AAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS------LETVACGAAPLGKDTI 324 (549)
Q Consensus 255 ~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~------lr~v~~~Ge~l~~~~~ 324 (549)
..+.|.+..++.+ .++..|++.|+++++.-++.+-..+..+.+....+...++. .-.++..-+.....+.
T Consensus 1006 gVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali 1085 (1363)
T KOG3628|consen 1006 GVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIALI 1085 (1363)
T ss_pred HHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHHH
Confidence 9999999888765 47899999999999998888877777776654433222211 1233344455566777
Q ss_pred HHHHHhCCCCc-----EEcccCc-------------cccccceecc------------cCcCCCCCCCccccccCCcEEE
Q 008895 325 MAFASKFPKVV-----LVQAYGL-------------TESTAGVFRT------------VGPDECRRWGSTGRLSAGLEAK 374 (549)
Q Consensus 325 ~~~~~~~~~~~-----l~~~yG~-------------tE~~~~~~~~------------~~~~~~~~~~~~G~~~~~~~~~ 374 (549)
..+.+.|...- +-..|++ .|-.....-. .+..........|...+++++.
T Consensus 1086 ~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~ 1165 (1363)
T KOG3628|consen 1086 ASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIA 1165 (1363)
T ss_pred HHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeE
Confidence 77776662111 1122222 2211100000 0000111122448888999999
Q ss_pred EEcCCCCCcCCCCCcceEEEecCCcccccCCCcccc-ccccC---------CCCeeecCceEEEec------C----CeE
Q 008895 375 IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT-SATLL---------PDGWMRTGDLCYIDE------D----GFL 434 (549)
Q Consensus 375 i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~-~~~~~---------~~~~~~TGD~~~~~~------~----g~~ 434 (549)
|++||+..+|.+|+.||||+.|.+-+.+|++..+.. ...|. ...|-||||+|++.. + .-+
T Consensus 1166 IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~L 1245 (1363)
T KOG3628|consen 1166 IVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLL 1245 (1363)
T ss_pred EeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeE
Confidence 999999999999999999999998888877542221 11111 235999999999842 2 359
Q ss_pred EEEcccCCeeeeCcEeeChHHHHHHHH-cCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH-HhcCCCCC
Q 008895 435 FIVDRLKDLIKYKGYQVAPAELEHLLL-SHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV-ARQVSPYK 512 (549)
Q Consensus 435 ~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l-~~~l~~~~ 512 (549)
|++|-.++.+.++|.+.+|.+||..+. .||.|.+|+|+ .++..++..+.... +....+|.-.+ ...|.++.
T Consensus 1246 yVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF-----~~~glvVvviE~~g--q~~~~~LvPlIv~~vL~eH~ 1318 (1363)
T KOG3628|consen 1246 YVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVF-----QATGLVVVVIECHG--QQELADLVPLIVNVVLEEHY 1318 (1363)
T ss_pred EEeecccceeeecCcccCcchHHHHHHHhcccccceeeE-----eeCCeEEEEEEecC--chhHhhhhHHHHHHHHhhcc
Confidence 999999999999999999999998775 68999999999 34456666666654 33333443333 44566666
Q ss_pred ccc-EEEEe--CccCCCCCCcccHHHHHcccCcCCCC
Q 008895 513 KIR-RVAFI--NAIPKSAAGKILRMELRKVAVPSGSS 546 (549)
Q Consensus 513 ~p~-~i~~v--~~lP~t~~GKv~r~~l~~~~~~~~~~ 546 (549)
++. .+.|| ..+|+++.|..+|..+++.+..+.++
T Consensus 1319 iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~ 1355 (1363)
T KOG3628|consen 1319 IILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKLD 1355 (1363)
T ss_pred eEEEEEEEecCCccccCCchhhHHHHHHHHHHhcccc
Confidence 655 66666 56999999999999999999998875
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=291.47 Aligned_cols=484 Identities=18% Similarity=0.177 Sum_probs=320.4
Q ss_pred CHHHHHhhcccCCCCCCCCCcEEEE----CCC--CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHH
Q 008895 39 SAVDYVSSLRATLPWRDDDTVALIN----SVT--GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112 (549)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~a~~~----~~~--~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~ 112 (549)
++...+.+.+.+. |...+..+ ... -..+||.+.....+.+++.|.. .|...|+.|++++..+.++++..
T Consensus 37 ~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~-~~~~~~~~v~i~~~~~~d~~v~v 111 (1032)
T KOG1178|consen 37 TLEDSFRRELAEA----PENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVS-LGSLRGTTVAIYMLPSVDLVVSV 111 (1032)
T ss_pred chhhHHHHHHhhc----ccCCCceEeecccccccccchhhhhhhcccchhHHHhhh-cccccCceEEEeccCcCCeeeee
Confidence 3444555666666 55555432 111 2589999999999999999999 89999999999999999999999
Q ss_pred HHHHHcCCeEccCCCCCC----HHHHHHHHhh-cCCeEEEEcCccHHHHh--cC--CCeEEEecCCchhhhhcccCCCcc
Q 008895 113 FSLLSLGVIISPANPVNT----ESEISRQIQL-SNPVIAFATSSVVHKLA--KL--KHRTILIDSPEFDSMTMSWNSKHE 183 (549)
Q Consensus 113 la~~~~G~~~v~l~~~~~----~~~l~~~l~~-~~~~~ii~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~ 183 (549)
++++++|..+++++|.++ .+.+..+... .....-+........+. +. +..+... ...+..+. .....
T Consensus 112 ~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~sv~~~-~~~f~~~~---~~~~~ 187 (1032)
T KOG1178|consen 112 FAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKLSVETI-ADSFQMVL---HNEDT 187 (1032)
T ss_pred eehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhccccccchhhc-cchhhhhh---ccCCC
Confidence 999999999999999998 3322111110 00111111111111110 00 0001111 11111111 11111
Q ss_pred ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecCh-hhHHHHHHHHHHhhhccEE
Q 008895 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETA 262 (549)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~g~~~ 262 (549)
.......++..+.+.||||+||.||+|..+|..+.....+....++ ...++.+-..... ++..-.......+..|..+
T Consensus 188 r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~-~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l 266 (1032)
T KOG1178|consen 188 REIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFP-PTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNL 266 (1032)
T ss_pred cceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCC-cCccchhhhhheeecccchHHHHhhHhhcCcee
Confidence 1222456677899999999999999999999999999998888874 4444443222222 1211112333444455555
Q ss_pred EEecCc---CHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCC-------------CCCCCCceEEEEecCCCCHHHHHH
Q 008895 263 VVMQRF---DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD-------------GYDLSSLETVACGAAPLGKDTIMA 326 (549)
Q Consensus 263 ~~~~~~---~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~-------------~~~l~~lr~v~~~Ge~l~~~~~~~ 326 (549)
..+... .+..+.+.++++.++..+.+|++.+.++...... ....+.|+.+..+||+...++...
T Consensus 267 ~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s 346 (1032)
T KOG1178|consen 267 LVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTS 346 (1032)
T ss_pred ecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhh
Confidence 555432 3689999999999999999999987776654321 111347899999999999999987
Q ss_pred HHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcC---------------CCCCcCCCCCcce
Q 008895 327 FASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP---------------ETGDSLPPGKEGE 391 (549)
Q Consensus 327 ~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~---------------~~~~~~~~g~~Ge 391 (549)
+...+...-...-|++++........... ..+..+....++.++. ..+.+.+.++.+.
T Consensus 347 ~~~~~~~~~~~~~y~s~~~~~~~s~~~~~-------~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 419 (1032)
T KOG1178|consen 347 TFDLLAEIFFGLPYLSTDPTGLVSYDDFS-------PSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKG 419 (1032)
T ss_pred hhhcccceeeeecccCCCCccceeHHhhC-------cccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccce
Confidence 76666433344458888765544432111 1111111122222210 2223333222222
Q ss_pred EE----EecCCcccccCCCccccccccC-----CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHc
Q 008895 392 LS----IRGPTIMKGYVGEPEVTSATLL-----PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLS 462 (549)
Q Consensus 392 l~----v~g~~~~~gy~~~~~~~~~~~~-----~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~ 462 (549)
.. -.+..+..| ++.++.....+. .+..|+|||.|+..++|.+.+.||.|++||++|.++.+.+|+.++..
T Consensus 420 ~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~ 498 (1032)
T KOG1178|consen 420 CLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEV 498 (1032)
T ss_pred eecccccccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhcc
Confidence 22 223344444 222333222211 23479999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEeecCCCCCceeEEEEEeCCCCC-CCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 463 HREVADAAVIPYPDEEAGQMPMAFVVRQPHSS-LNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 463 ~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~-~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
+|.|.++++....+...++.+++||+...... .....|+.++.++|+.|++|..++.++++|+|++||||+++|.+..
T Consensus 499 ~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~~ 577 (1032)
T KOG1178|consen 499 HPDVKEAITLARENSTVGQTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLEYN 577 (1032)
T ss_pred CcchhhhheeeeeccccCceEEEEEeccCCCCchhHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhhhh
Confidence 99999999999998888999999999876543 3457899999999999999999999999999999999999999844
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-30 Score=262.74 Aligned_cols=325 Identities=15% Similarity=0.132 Sum_probs=222.2
Q ss_pred CCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEec
Q 008895 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ 266 (549)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~ 266 (549)
..++++.+.+||||||.||++.+||.++..........+ .+..++|+++...+..+..+. ...+.+...|++++...
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 456788999999999999999999999876654433222 246778888888887765555 34455677888776544
Q ss_pred CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCC--CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccc
Q 008895 267 RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344 (549)
Q Consensus 267 ~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE 344 (549)
. ....++.|++++++.+.++|+.+..+++.....+. ...++|.+++|||++++++++.+.+.| ++.+++.||+||
T Consensus 164 ~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE 240 (445)
T TIGR03335 164 K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTE 240 (445)
T ss_pred c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhh
Confidence 3 34668999999999999999988777764433322 246899999999999999999999998 799999999999
Q ss_pred cccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCc
Q 008895 345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGD 424 (549)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD 424 (549)
++.. ..+.. ......+.+.+.++|+|++++.++++|+.|||++++..... ..... +--.|+|||
T Consensus 241 ~~~~-~~c~~------~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~------~r~~~---PliRYrtgD 304 (445)
T TIGR03335 241 GTMC-GECQA------VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPG------ERCGS---LLINYDTED 304 (445)
T ss_pred hhhe-EEecC------CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCC------ccCCc---eEEEeecCc
Confidence 8632 22111 11122233567899999988899999999999998754210 00001 223499999
Q ss_pred eEEEec-C----C----eEEEEcccCCeeeeCcEeeChHHHHHHHHcC---CCcc-eEEEEeecCCCCCceeEEEEEeCC
Q 008895 425 LCYIDE-D----G----FLFIVDRLKDLIKYKGYQVAPAELEHLLLSH---REVA-DAAVIPYPDEEAGQMPMAFVVRQP 491 (549)
Q Consensus 425 ~~~~~~-~----g----~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~---~~v~-~~~vv~~~~~~~~~~~~~~v~~~~ 491 (549)
++++.. + | .+...||.||+++++|.+|+|.+||++|.++ +++. +..++...+....+.+.+.+...+
T Consensus 305 ~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~ 384 (445)
T TIGR03335 305 TTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECED 384 (445)
T ss_pred eEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEecC
Confidence 999732 2 2 2445799999999999999999999999994 5554 333443333222334555555544
Q ss_pred CCCCCHHHHHHHHHhc----CCC-------CCcccEEEEe--CccCCCC-CCcccH
Q 008895 492 HSSLNEAEIMEFVARQ----VSP-------YKKIRRVAFI--NAIPKSA-AGKILR 533 (549)
Q Consensus 492 ~~~~~~~~i~~~l~~~----l~~-------~~~p~~i~~v--~~lP~t~-~GKv~r 533 (549)
....+.+++.+.+... ++. ..+...+.++ ..||+++ .||..|
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 385 KDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred cccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 3333444544444443 222 1112234444 6899984 698776
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=233.14 Aligned_cols=322 Identities=24% Similarity=0.303 Sum_probs=235.7
Q ss_pred CCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCCcEEEEecCh-hhHHHHHHHHHHhhhccEEEEecC
Q 008895 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVVMQR 267 (549)
Q Consensus 191 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~g~~~~~~~~ 267 (549)
.++...+--||||||+|+.+.+++..+..+.......+ .+...+|++....-. .+..|+..-+++-..|++++...+
T Consensus 89 ~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~ 168 (438)
T COG1541 89 KEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG 168 (438)
T ss_pred ccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC
Confidence 35566788899999999999999998876665555444 345666766654442 223334455566668888888877
Q ss_pred cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCC--CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcccc
Q 008895 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (549)
Q Consensus 268 ~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~--~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 345 (549)
-+.+.-+++++++++|++.++|+++..|++.....+ ..-.++|.+++|+|++++++++.+.+.| ++..++.||+||.
T Consensus 169 g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGltE~ 247 (438)
T COG1541 169 GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTEG 247 (438)
T ss_pred ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccccc
Confidence 788999999999999999999999999998877664 3457899999999999999999999999 8999999999998
Q ss_pred ccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCce
Q 008895 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425 (549)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~ 425 (549)
.+..+. +|......--.-+...++|+||++++.+++|+.|||+++.-. +..+ +--.|+|||+
T Consensus 248 ~g~g~~-----eC~~~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~------------~~~~-PlIRYrtgDi 309 (438)
T COG1541 248 FGPGAG-----ECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLT------------KEGM-PLIRYRTGDI 309 (438)
T ss_pred cCCccc-----ccccccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEecc------------ccCc-ceEEEEcCCe
Confidence 655311 111111222234678899999999999999999999998643 1111 2335999999
Q ss_pred EEEecC----C-----eEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcc-eEEEEeecCCCCCceeEEEEEeCCCCCC
Q 008895 426 CYIDED----G-----FLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVA-DAAVIPYPDEEAGQMPMAFVVRQPHSSL 495 (549)
Q Consensus 426 ~~~~~~----g-----~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~-~~~vv~~~~~~~~~~~~~~v~~~~~~~~ 495 (549)
..+..+ | ...+.||.||++++.|.+|+|..||.+|.+.+.+. +..++... ++..+.+.+.|+..++...
T Consensus 310 t~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~~~~~ 388 (438)
T COG1541 310 TVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELENEAEE 388 (438)
T ss_pred eEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecCcccc
Confidence 999763 2 25689999999999999999999999999999998 66666666 5556677777777654211
Q ss_pred --CHHHHHHHHHhcCCCCC--ccc-EEEEeCccCCCCCCcccH
Q 008895 496 --NEAEIMEFVARQVSPYK--KIR-RVAFINAIPKSAAGKILR 533 (549)
Q Consensus 496 --~~~~i~~~l~~~l~~~~--~p~-~i~~v~~lP~t~~GKv~r 533 (549)
+..++.+.+.+.+.... .+. .++.+.++|+|. ||..|
T Consensus 389 ~~~~~~~~~~l~~~~~~~~~~~~~v~~v~~g~l~r~~-~K~kr 430 (438)
T COG1541 389 LEDERRLAKKLIKNIKSELGVRVEVELVEPGELPRTE-GKAKR 430 (438)
T ss_pred hHHHHHHHHHHHHHHHhhcCCceEEEEEeccceeccc-CceeE
Confidence 12222234444332222 222 444458999997 56544
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=193.61 Aligned_cols=205 Identities=13% Similarity=0.055 Sum_probs=155.4
Q ss_pred HhhcccCCCCCCCCCcEEEEC-C---CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcC
Q 008895 44 VSSLRATLPWRDDDTVALINS-V---TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119 (549)
Q Consensus 44 ~~~~~~~~~~~~p~~~a~~~~-~---~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G 119 (549)
++..++++ |+++|++.. . ++.++||+||.++++++|+.|++.+|+++||+|+++++|++++++++|||+++|
T Consensus 2 ~~~~~~~~----p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G 77 (227)
T TIGR03089 2 LSPLLAAD----PASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTG 77 (227)
T ss_pred hhhhhhhC----CCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 35566777 999999742 1 234799999999999999999962599999999999999999999999999999
Q ss_pred CeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEec-----C----------CchhhhhcccCCCccc
Q 008895 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILID-----S----------PEFDSMTMSWNSKHEL 184 (549)
Q Consensus 120 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~ 184 (549)
++++|++ .+++++++++++......... ..+.+. . .++......... ..
T Consensus 78 ~v~vp~n-------------~s~a~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 141 (227)
T TIGR03089 78 VEVVLAG-------------DPDADVVVTGPDRLAAAAGSG-EVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGD--QF 141 (227)
T ss_pred CEEEeCC-------------CCCCCEEEeCcchhhhcccCC-ceEEEeccccccCCCCCCCCcccchhhhhhccCC--CC
Confidence 9999995 678999999888776654221 222221 0 012211111100 11
Q ss_pred ccc-ccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEE
Q 008895 185 DRA-KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETA 262 (549)
Q Consensus 185 ~~~-~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~ 262 (549)
.+. ...++|++.++||||+ +|.++..+. ... +..++|+++ .+|++|.+|+ ..++.++..|+++
T Consensus 142 ~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~ 206 (227)
T TIGR03089 142 APYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-GLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSL 206 (227)
T ss_pred CCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-CCCCCCeEE-ecCCCchHHHHHHHHHHhccCceE
Confidence 111 3456899999999986 555655544 222 467889999 9999999999 6688999999999
Q ss_pred EEecCcCHHHHHHHHHHhcee
Q 008895 263 VVMQRFDLKMMLKAVEEFRVT 283 (549)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~~~t 283 (549)
++.++|++..+++.|+++|+|
T Consensus 207 v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 207 VLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred EEecCCCHHHHHHHHHhhcCC
Confidence 999999999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=195.58 Aligned_cols=119 Identities=25% Similarity=0.324 Sum_probs=111.0
Q ss_pred CCCeeecCceEEE-ecCCeEEEEcccCCeeeeCc---EeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCC
Q 008895 416 PDGWMRTGDLCYI-DEDGFLFIVDRLKDLIKYKG---YQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP 491 (549)
Q Consensus 416 ~~~~~~TGD~~~~-~~~g~~~~~GR~~d~i~~~G---~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~ 491 (549)
.+|||+|||+|++ |++|++++.||.+ +| ++|+|. ||++|.+||+|.+|+|++++++..++.+++||++..
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~ 280 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL 280 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence 6899999999998 6999999999998 88 799999 999999999999999999999999999999999763
Q ss_pred CCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 492 HSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 492 ~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
..+.++++++++++|+. ++|+.+.++++||+|++|||+|++|++++.+.
T Consensus 281 --~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~ 329 (365)
T PRK09188 281 --PADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQ 329 (365)
T ss_pred --CCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcc
Confidence 46789999999999999 99999999999999999999999999987443
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=184.17 Aligned_cols=476 Identities=14% Similarity=0.200 Sum_probs=309.1
Q ss_pred CCCcEEEEC-CCC--ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCC--ChHHHHHHHHHHcCCeEccCCCCCC
Q 008895 56 DDTVALINS-VTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYFSLLSLGVIISPANPVNT 130 (549)
Q Consensus 56 p~~~a~~~~-~~~--~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~--~~~~v~~la~~~~G~~~v~l~~~~~ 130 (549)
+...|.+.- ..| ..+||..+..+|.+.|+.-+.+.|+.++|+|.++...+ .++++..++|..+|.+.+|+.+..+
T Consensus 108 ~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s 187 (1363)
T KOG3628|consen 108 ATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSS 187 (1363)
T ss_pred CCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhh
Confidence 445555432 113 68999999999999999555558999999999988666 8999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCc--------cccccccCCCCEEEEEccCC
Q 008895 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKH--------ELDRAKVCQSDVAAIMYSSG 202 (549)
Q Consensus 131 ~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~a~i~~TSG 202 (549)
.+++..+++....+++++............ -..++......+.... ....+..... ..+|-||++
T Consensus 188 ~~el~~i~~~~~~~~~l~t~a~~r~~~~~~------~~~s~~k~v~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s 260 (1363)
T KOG3628|consen 188 SEELKDIVNPTPERVALTTEAGERAFINDN------SPVSLAKAVAWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRS 260 (1363)
T ss_pred hhhhhcccCCCccceEeehhhhHHHhhhcc------CcccHHHHHHhhhcccccceeehhhccCCceeee-eEEEEEecc
Confidence 999999999999999999887666543321 1112222222221110 1111111222 889999999
Q ss_pred CCCccchhhhcHHHHHHHH---------------HHhhccC----CCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEE
Q 008895 203 TTGRVKGVMLTHRNLTAAV---------------ASSFASS----PKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETA 262 (549)
Q Consensus 203 tTG~pK~v~~t~~~l~~~~---------------~~~~~~~----~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~ 262 (549)
++|.--|++.+|+ +.... .++...+ ......++++.........|+ +.++.++..|.+.
T Consensus 261 ~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~ 339 (1363)
T KOG3628|consen 261 PLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCT 339 (1363)
T ss_pred chhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCcee
Confidence 9999888988887 43222 2221111 122344555555555555566 6688999999999
Q ss_pred EEecC---cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC-----------CCCCCCCCceEEEEecCCCCHHHHHHHH
Q 008895 263 VVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS-----------TDGYDLSSLETVACGAAPLGKDTIMAFA 328 (549)
Q Consensus 263 ~~~~~---~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~-----------~~~~~l~~lr~v~~~Ge~l~~~~~~~~~ 328 (549)
+.++. ..+..+.+.+.++|.+++..--..+.+...+.. ....+++++|.+++..+.+..+..+...
T Consensus 340 i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs 419 (1363)
T KOG3628|consen 340 IGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVS 419 (1363)
T ss_pred ecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeecchHHHHHHH
Confidence 98876 667889999999999998766444433322111 1224688999999999999988665444
Q ss_pred HhC----CCCc-----------------EEcccCccccccceecccCcCC----------------------------CC
Q 008895 329 SKF----PKVV-----------------LVQAYGLTESTAGVFRTVGPDE----------------------------CR 359 (549)
Q Consensus 329 ~~~----~~~~-----------------l~~~yG~tE~~~~~~~~~~~~~----------------------------~~ 359 (549)
..+ +... ....=+++|.+......+.... ..
T Consensus 420 ~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~ 499 (1363)
T KOG3628|consen 420 DRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSL 499 (1363)
T ss_pred HhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhc
Confidence 333 1111 1122223444433322211000 00
Q ss_pred CCCccccccCC-cEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC------------CCeeecCceE
Q 008895 360 RWGSTGRLSAG-LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------------DGWMRTGDLC 426 (549)
Q Consensus 360 ~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------------~~~~~TGD~~ 426 (549)
....+|...|| +.+.++++++...|.++++|||||.++++..+|+.-+..|...|.. ..+.|||-+|
T Consensus 500 s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlG 579 (1363)
T KOG3628|consen 500 SVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLG 579 (1363)
T ss_pred CccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhccee
Confidence 01133444444 6678899999999999999999999999999999877777666631 2389999999
Q ss_pred EEecCCeEEEEcccCCee-eeCcEeeChHH----------HHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC-C
Q 008895 427 YIDEDGFLFIVDRLKDLI-KYKGYQVAPAE----------LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS-S 494 (549)
Q Consensus 427 ~~~~~g~~~~~GR~~d~i-~~~G~~v~~~~----------IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~-~ 494 (549)
++.+ |.+|++|-++|++ ...|.+.+..+ |+.+.+..+.|-++.++- ++..++.++..+.. .
T Consensus 580 Fv~~-gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv~~esP~a~e 652 (1363)
T KOG3628|consen 580 FVHN-GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVVVLESPDATE 652 (1363)
T ss_pred eeeC-CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEEEEeCcchhh
Confidence 9965 5555555555544 45887766544 344455667788888872 33444444433322 1
Q ss_pred CCHHHHHHHHHhcCCCCCccc--E--EEEeCccCCCCCCcccHHHHHcccCcCCCC
Q 008895 495 LNEAEIMEFVARQVSPYKKIR--R--VAFINAIPKSAAGKILRMELRKVAVPSGSS 546 (549)
Q Consensus 495 ~~~~~i~~~l~~~l~~~~~p~--~--i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~ 546 (549)
.+.-+.+..+-+.+-..++.. . ++..+.||||+-|-|.-.++++.|+++++.
T Consensus 653 ~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~G~L~ 708 (1363)
T KOG3628|consen 653 ENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLEGSLP 708 (1363)
T ss_pred hhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHcCCCC
Confidence 122223333333333344443 2 233388999998889999999999999884
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-16 Score=159.90 Aligned_cols=244 Identities=16% Similarity=0.111 Sum_probs=155.9
Q ss_pred EEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCCcEEEEe--cChhhHHHHHHHHHHhhhccEEEEecCcC
Q 008895 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFT--MPYFHIYGLFFCFRAAALMETAVVMQRFD 269 (549)
Q Consensus 194 ~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~--~pl~~~~g~~~~~~~l~~g~~~~~~~~~~ 269 (549)
...+..||||||.|-.+..+..............+ .+...++++... .+. +.+ ..+..........-+. .+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly---~~~~~~~~~~~~~~l~-~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY---QSVNNRWISLDFFDLL-AP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH---HHHHhccceeeecCCC-cC
Confidence 34567799999999999988886644333222222 123333333332 211 111 1111111101111122 46
Q ss_pred HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccce
Q 008895 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (549)
Q Consensus 270 ~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~ 349 (549)
.+.+++.|++++|+++.++|+.+..|++.....+.. .+++.++++||.++++.++.+.+.| ++++++.||+|| |.++
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~la 252 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFLA 252 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hheE
Confidence 799999999999999999999999998865544433 4789999999999999999999999 799999999999 5544
Q ss_pred ecccCcCCCCCCCccccccCCcEEE--EEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEE
Q 008895 350 FRTVGPDECRRWGSTGRLSAGLEAK--IVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCY 427 (549)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~--i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~ 427 (549)
..+.. +....--+.+.++ ++|++ ++ ++.+|++-. |. .. +--.|+|||++.
T Consensus 253 ~eC~~-------g~lHl~ed~~~vE~~ivD~~-~~-------~~~ViT~L~------n~----~~---PlIRYrtGD~~~ 304 (430)
T TIGR02304 253 STCRC-------GTLHLNEDLVHIEKQYLDEH-KR-------FVPIITDFT------RT----TQ---PIVRYRLNDILV 304 (430)
T ss_pred EecCC-------CCEEEccccEEEEeeEECCC-Cc-------eEEEEecCC------Cc----cc---eEEeeeCCCEEE
Confidence 43311 1121112234445 77743 22 344665432 11 01 222499999998
Q ss_pred EecC----C----eE-EEEcccCCeeee---CcE--eeChHHHHHHHH-cCCCcceEEEEe
Q 008895 428 IDED----G----FL-FIVDRLKDLIKY---KGY--QVAPAELEHLLL-SHREVADAAVIP 473 (549)
Q Consensus 428 ~~~~----g----~~-~~~GR~~d~i~~---~G~--~v~~~~IE~~l~-~~~~v~~~~vv~ 473 (549)
...+ | .+ .+.||.+|++++ +|. .|+|..++.++. ..++|.+..++-
T Consensus 305 ~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q 365 (430)
T TIGR02304 305 ESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQ 365 (430)
T ss_pred eCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEE
Confidence 8544 3 23 388999999985 454 459999998754 578999988873
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.5e-13 Score=98.31 Aligned_cols=70 Identities=37% Similarity=0.613 Sum_probs=61.9
Q ss_pred HHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcc--cEEEEeCc-cCCCCCCc
Q 008895 455 ELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKI--RRVAFINA-IPKSAAGK 530 (549)
Q Consensus 455 ~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p--~~i~~v~~-lP~t~~GK 530 (549)
|||++|.+||+|.+|+|++.+++..|+.+++|+++ +.++|+++++++|++|+.| ..++.+++ ||+|++||
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 79999999999999999999998889999999998 4589999999999999999 45555677 99999998
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-09 Score=104.24 Aligned_cols=226 Identities=18% Similarity=0.224 Sum_probs=135.6
Q ss_pred CCCEEEEEccCCCCCccchhhhcHHHHHHHH---HHhhccCCCCCC-CcEEEEecChhh---HHHH--HHHHHHhhhccE
Q 008895 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV---ASSFASSPKRVS-PAVMLFTMPYFH---IYGL--FFCFRAAALMET 261 (549)
Q Consensus 191 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~---~~~~~~~~~~~~-~~~~~~~~pl~~---~~g~--~~~~~~l~~g~~ 261 (549)
.+++..++.||||||.|--+.+.+..+.... ......+.+... .-.++...|... .++. ...+.....+..
T Consensus 88 ~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 167 (365)
T PF04443_consen 88 EEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGSR 167 (365)
T ss_pred hhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCce
Confidence 4567788899999999755555555444333 223332222222 223333333321 1111 222223334444
Q ss_pred EEEec--CcCHHHHHHHHH----HhceeeeeecHHHHHHHHhCCCCCCCC--CC-CceEEEEec------CCCC-HHHHH
Q 008895 262 AVVMQ--RFDLKMMLKAVE----EFRVTHAAVTPPIVVAMSKGGSTDGYD--LS-SLETVACGA------APLG-KDTIM 325 (549)
Q Consensus 262 ~~~~~--~~~~~~~~~~l~----~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~-~lr~v~~~G------e~l~-~~~~~ 325 (549)
.... .++.+.+.+.+. +.++..+++.|.++..++...+..+.. |+ ..+.+..|| +.++ .++.+
T Consensus 168 -~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~ 246 (365)
T PF04443_consen 168 -FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA 246 (365)
T ss_pred -eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence 3333 367777776664 457888999998777666555444443 33 455566666 4565 57778
Q ss_pred HHHHhCCC---CcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccc
Q 008895 326 AFASKFPK---VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402 (549)
Q Consensus 326 ~~~~~~~~---~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~g 402 (549)
.+.+.|+. ..+++.||+||.....+.+. . +..-. .+. +.|+||++.++++.|+.|-|.+-++....
T Consensus 247 ~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~---~----~~~~~-p~w--V~iRDp~tl~~~~~Ge~Gli~vidl~~~s- 315 (365)
T PF04443_consen 247 RLQEVFGVIPIENIYDMYGMTELNSQAYECG---H----GHFHV-PPW--VIIRDPETLEPLPPGETGLIQVIDLANTS- 315 (365)
T ss_pred HHHHHHCCCCHHHeeeeeeccccchhheeCC---C----CcccC-CCe--EEEECCCCCcCCCCCCeeEEEEEcccccC-
Confidence 88888833 47999999999776544421 1 11111 222 77779999999999999999887654221
Q ss_pred cCCCccccccccCCCCeeecCceEEEecC--------CeEEEEcccC
Q 008895 403 YVGEPEVTSATLLPDGWMRTGDLCYIDED--------GFLFIVDRLK 441 (549)
Q Consensus 403 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~--------g~~~~~GR~~ 441 (549)
| -+..-|.|+|.+..+ .++.++||.+
T Consensus 316 ~-------------p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~ 349 (365)
T PF04443_consen 316 Y-------------PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRAD 349 (365)
T ss_pred C-------------CcEEEEcceeeecCCCCCCCccCCEEEEEeCCC
Confidence 1 123679999987654 2799999976
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.3e-08 Score=101.00 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=104.3
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcE-EcccCccccccceecccCcCCCCCCCccccccCCc-EEEEEcCCC---
Q 008895 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVL-VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIVDPET--- 380 (549)
Q Consensus 306 l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l-~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~--- 380 (549)
.++|+.|.+.+..-.......+++.+|++.+ ...|++||+ .+.+.. . .. ...+.+.++. -.+-++.++
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg-~i~i~~-~---~~--~~~~~l~~~~~ffEFip~~~~~~ 338 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEG-FIGIPL-D---PE--DPGYVLAPDSGFFEFIPVDEDEQ 338 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTE-EEEEES-----CC--C--EEE-TTSSEEEEEE-STT--
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccce-EEEEec-C---CC--CCceEeecCCeEEEEEeccCCcc
Confidence 6899977776666666777888888877544 468999995 333321 1 00 1122222322 334443222
Q ss_pred -----C-----CcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec--CC--eEEEEcccCCeeee
Q 008895 381 -----G-----DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE--DG--FLFIVDRLKDLIKY 446 (549)
Q Consensus 381 -----~-----~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~--~g--~~~~~GR~~d~i~~ 446 (549)
. ..+..|+.-||+|+..+ |.| .|+.||++++.. ++ .+.|+||.+.++.+
T Consensus 339 ~~~~~~~~l~~~ele~G~~YelviTt~~---GLy--------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l 401 (528)
T PF03321_consen 339 NPSEQPKTLLLHELEVGEEYELVITTNS---GLY--------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL 401 (528)
T ss_dssp -----SSSEEGGG--TT-EEEEEEESTT---S-S--------------SEEECEEEEEEEEETTEEEEEEEEETTEEE-S
T ss_pred cccCCCceecHHHhcCCCeEEEEEeccc---cee--------------eeecCCEEEEeeccCCCcEEEEeccCCceeec
Confidence 1 25567888899998643 222 299999999853 34 79999999999999
Q ss_pred CcEeeChHHHHHHHHcC-----CCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcC
Q 008895 447 KGYQVAPAELEHLLLSH-----REVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQV 508 (549)
Q Consensus 447 ~G~~v~~~~IE~~l~~~-----~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l 508 (549)
.|++++-.+|+.++.+. -.+.+..+.+.........-+.++..... ..+.+++.+.|.+.|
T Consensus 402 ~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~-~~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 402 FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE-PDDLEELAKALDESL 467 (528)
T ss_dssp SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS--HHHHHHHHHHHHHCS
T ss_pred ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC-chHHHHHHHHHHHHh
Confidence 99999999999998764 33667777766322233455666666544 224556777776666
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00033 Score=73.20 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=81.9
Q ss_pred CCC---ceEEEEecCCCCHHHHHHHHHhCCCC-cEEcccCccccccceecccCcCCCCCCCccccc--cCCcEEEEEcCC
Q 008895 306 LSS---LETVACGAAPLGKDTIMAFASKFPKV-VLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL--SAGLEAKIVDPE 379 (549)
Q Consensus 306 l~~---lr~v~~~Ge~l~~~~~~~~~~~~~~~-~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~--~~~~~~~i~d~~ 379 (549)
.++ +..+..||-. .-+..++..+++. .+...|++||+ .+.+.. . ..+ .+...+.. +.+.-.+-++.+
T Consensus 301 WPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg-~~gi~~-~-~~~-~p~~~~~~l~~~~~ffEFiP~~ 373 (597)
T PLN02249 301 WPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSES-YFGINL-N-PMC-KPSEVSYTIMPNMAYFEFLPHN 373 (597)
T ss_pred CCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccce-EEEeec-C-CCC-CCCCcceEecCCcEEEEeeecc
Confidence 577 4445555543 6667777777665 45578999995 333321 1 111 11111111 223444444211
Q ss_pred -C------------CCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec----CCeEEEEcccCC
Q 008895 380 -T------------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRLKD 442 (549)
Q Consensus 380 -~------------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d 442 (549)
. ...+..|+.-+|+|+..+ |.| .|+.||+.++.. --.+.|+||.+.
T Consensus 374 ~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~~---GLy--------------RY~iGDvVrvtgf~~~~P~i~F~gR~~~ 436 (597)
T PLN02249 374 HDGDGALDETSLVELADVEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFKFIRRKNV 436 (597)
T ss_pred cCCcccCCCCcEecHHHcCCCCeEEEEEEccc---cee--------------EeecCCEEEEeeccCCCcEEEEEccCCc
Confidence 1 123456777788886532 111 399999999853 346899999999
Q ss_pred eeeeCcEeeChHHHHHHHHc
Q 008895 443 LIKYKGYQVAPAELEHLLLS 462 (549)
Q Consensus 443 ~i~~~G~~v~~~~IE~~l~~ 462 (549)
++.+.|++++-.+++.++.+
T Consensus 437 ~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 437 LLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred ceecccccCCHHHHHHHHHH
Confidence 99999999999999998876
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00038 Score=72.18 Aligned_cols=137 Identities=12% Similarity=0.049 Sum_probs=89.2
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEc-ccCccccccceecccCcCCCCCCCccccccCCcE-EEEEcCCCC--
Q 008895 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ-AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLE-AKIVDPETG-- 381 (549)
Q Consensus 306 l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~-~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~i~d~~~~-- 381 (549)
.++++.|-+.-..-.......++..++++++.. .|++||+-. .+... ..+..........|+.. .+.++.+++
T Consensus 292 WP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~-ginl~--p~~~p~~~sy~L~p~~~yFEFip~~~~~~ 368 (606)
T PLN02247 292 WPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYF-GINLK--PLSDPSDVSYTLLPNMAYFEFLPVDKNNG 368 (606)
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEE-EeccC--cCCCccCCceeecCCcEEEEEeecCCCcc
Confidence 578888877666667777788887778877665 899999533 33211 11111112233344443 233321111
Q ss_pred ---------------------------CcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEe----c
Q 008895 382 ---------------------------DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID----E 430 (549)
Q Consensus 382 ---------------------------~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~----~ 430 (549)
..+..|+.-||+|+.-+ |. -.|+.||+.++. .
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~~---GL--------------YRYrlGDvv~V~GF~n~ 431 (606)
T PLN02247 369 EVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFT---GL--------------YRYRVGDILMVTGFYNN 431 (606)
T ss_pred cccccccccccccccccccccCceecHHHccCCCeEEEEEEecC---ce--------------EEEecCCEEEEeeecCC
Confidence 13456777788886532 11 138999999873 3
Q ss_pred CCeEEEEcccCCeeeeCcEeeChHHHHHHHHc
Q 008895 431 DGFLFIVDRLKDLIKYKGYQVAPAELEHLLLS 462 (549)
Q Consensus 431 ~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~ 462 (549)
.-.+.|++|.+.+..+.|++++-.++..++.+
T Consensus 432 ~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~ 463 (606)
T PLN02247 432 APQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQ 463 (606)
T ss_pred CceEEEEecCCceeecccccCCHHHHHHHHHH
Confidence 46799999999999999999999999888765
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0005 Score=71.20 Aligned_cols=137 Identities=14% Similarity=0.095 Sum_probs=87.8
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHhCCCCcEE-cccCccccccceecccCcCCCCCCCccccccCCcE-EEEEcCCC---
Q 008895 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLE-AKIVDPET--- 380 (549)
Q Consensus 306 l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~i~d~~~--- 380 (549)
.++++.|-+.-..-.......++..++++++. ..|++||+-. .+.... .+..........|+.. .+.++.+.
T Consensus 303 WP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~-ginl~P--~~~p~~~sy~L~p~~~yFEFip~~~~~~ 379 (612)
T PLN02620 303 WPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYF-GVNLNP--LCKPSEVSYTLIPTMAYFEFLPVHRNNG 379 (612)
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEE-EeccCC--CCCcccceeeecCCcEEEEEeeccCccc
Confidence 57888887766666677777887777777655 4799999533 332111 1111112233334433 23332111
Q ss_pred ----------------C-----CcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEe----cCCeEE
Q 008895 381 ----------------G-----DSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID----EDGFLF 435 (549)
Q Consensus 381 ----------------~-----~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~----~~g~~~ 435 (549)
+ ..+..|+.-||+|+.-+ |.| .|+.||+.++. ..-.+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~---GLy--------------RYrlGDvv~V~Gf~n~~P~~~ 442 (612)
T PLN02620 380 VTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYA---GLY--------------RYRVGDVLRVAGFKNKAPQFS 442 (612)
T ss_pred ccccccccccccccccCccccHHHccCCCeEEEEEEecC---ceE--------------EEecCCEEEEeeecCCCceEE
Confidence 1 12456777888886532 111 38999999874 345799
Q ss_pred EEcccCCeeeeCcEeeChHHHHHHHHc
Q 008895 436 IVDRLKDLIKYKGYQVAPAELEHLLLS 462 (549)
Q Consensus 436 ~~GR~~d~i~~~G~~v~~~~IE~~l~~ 462 (549)
|++|.+-+..+.|++++-.++..++.+
T Consensus 443 Fv~R~~~~lsi~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 443 FICRKNVVLSIDSDKTDEVELQNAVKN 469 (612)
T ss_pred EEeecCceeecccccCCHHHHHHHHHH
Confidence 999999999999999999998887754
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.9e-05 Score=61.76 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=48.8
Q ss_pred cEeeChHHHHHHHHcCCCcc-eEEEEeecCCCCCceeEEEEEeCCCCCC---CH----HHHHHHHHhcCCCCCcccEEEE
Q 008895 448 GYQVAPAELEHLLLSHREVA-DAAVIPYPDEEAGQMPMAFVVRQPHSSL---NE----AEIMEFVARQVSPYKKIRRVAF 519 (549)
Q Consensus 448 G~~v~~~~IE~~l~~~~~v~-~~~vv~~~~~~~~~~~~~~v~~~~~~~~---~~----~~i~~~l~~~l~~~~~p~~i~~ 519 (549)
|.+|+|.+||++|.++|++. +..++.... ...+.+.+.|...++... +. ++|.+.+++.+.-. | .+.+
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~-~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~--~-~V~l 76 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTRE-GGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR--P-EVEL 76 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEE-TTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---E-EEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcC-CCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce--E-EEEE
Confidence 88999999999999999999 444444433 456677777887765432 12 34555555554432 3 3555
Q ss_pred e--CccCCCCCCcccH
Q 008895 520 I--NAIPKSAAGKILR 533 (549)
Q Consensus 520 v--~~lP~t~~GKv~r 533 (549)
+ +.||++ .||..|
T Consensus 77 v~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 77 VPPGTLPRS-EGKAKR 91 (96)
T ss_dssp E-TT-S----SSSS-S
T ss_pred ECCCCccCC-CCcceE
Confidence 4 689998 588765
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.2 Score=50.06 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=72.8
Q ss_pred eecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCC--ChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEE
Q 008895 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (549)
Q Consensus 69 ~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~--~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 146 (549)
-+|+.|+...+..+|+.|.. .|..+||+|.++..-+ ..-+...+|+.++|++++|+.+. ..+.-..++.+.++.+|
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~-~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 109 GYTAKDIERWAELLARSLYS-AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 59999999999999999998 8999999998876511 12278899999999999999883 45666788999999999
Q ss_pred EEcCccHHHHh
Q 008895 147 FATSSVVHKLA 157 (549)
Q Consensus 147 i~~~~~~~~~~ 157 (549)
.+.++....+.
T Consensus 187 ~~tps~~l~la 197 (438)
T COG1541 187 AATPSYLLYLA 197 (438)
T ss_pred EEChHHHHHHH
Confidence 99988766553
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=84.59 E-value=6.4 Score=40.17 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=65.5
Q ss_pred eecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCC--hHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEE
Q 008895 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (549)
Q Consensus 69 ~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~--~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 146 (549)
.+|..++...+..+++.+.. .|+++||++......+. ......++....|+..+++++.. .+.+...+++.++.++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~-~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l 171 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRA-AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII 171 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHH-cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence 46788887777777888887 89999999887665443 22334677889999999887654 5778889999999999
Q ss_pred EEcCccHHHH
Q 008895 147 FATSSVVHKL 156 (549)
Q Consensus 147 i~~~~~~~~~ 156 (549)
+..+.....+
T Consensus 172 ~~~Ps~l~~L 181 (422)
T TIGR02155 172 MVTPSYMLNL 181 (422)
T ss_pred EEcHHHHHHH
Confidence 9888765544
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=84.06 E-value=8.3 Score=39.69 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=60.6
Q ss_pred eecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCCh--HHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEE
Q 008895 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE--IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA 146 (549)
Q Consensus 69 ~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~--~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 146 (549)
-+|..++...+..+++.+.. .|+.+||++.++.+.+.. .....+++...|+.++|... ......++++.++.++
T Consensus 105 ~~T~~dl~~~~~~~~r~~~~-~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 105 FLTWDDWKRYAEKYARSFVS-QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eecHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 47999999888888888887 899999999998765543 23445788899998887653 2345677888888888
Q ss_pred EEcCcc
Q 008895 147 FATSSV 152 (549)
Q Consensus 147 i~~~~~ 152 (549)
+.....
T Consensus 181 ~~~ps~ 186 (445)
T TIGR03335 181 VASVFK 186 (445)
T ss_pred EECHHH
Confidence 765543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 549 | ||||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-87 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-82 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 3e-80 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 4e-80 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 4e-80 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 1e-78 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 1e-77 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-77 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-77 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 8e-77 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 2e-51 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-48 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 2e-46 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 3e-40 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 9e-39 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 4e-38 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 1e-37 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 1e-37 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 2e-34 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-32 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 9e-32 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 2e-29 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 6e-29 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 7e-29 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 3e-28 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 3e-28 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 5e-28 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 2e-27 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 2e-25 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-25 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 6e-25 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 8e-25 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 1e-24 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-23 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 5e-23 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 8e-21 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 3e-20 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 5e-20 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 1e-19 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 1e-19 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 1e-19 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 1e-19 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 3e-19 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 6e-19 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 7e-19 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 8e-19 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 2e-18 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 1e-16 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 5e-16 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 6e-15 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 1e-14 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-14 | ||
| 3t5a_A | 480 | Crystal Structure Of N-Terminal Domain Of Faal28 G3 | 3e-13 | ||
| 3e53_A | 480 | Crystal Structure Of N-Terminal Domain Of A Fatty A | 8e-13 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 7e-11 | ||
| 4dg8_A | 620 | Structure Of Pa1221, An Nrps Protein Containing Ade | 1e-09 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 2e-09 | ||
| 2y4n_A | 437 | Paak1 In Complex With Phenylacetyl Adenylate Length | 3e-05 | ||
| 3qov_A | 436 | Crystal Structure Of A Hypothetical Acyl-Coa Ligase | 3e-04 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 3e-04 | ||
| 2y27_A | 437 | Crystal Structure Of Paak1 In Complex With Atp From | 4e-04 |
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate Length = 437 | Back alignment and structure |
|
| >pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase (Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A Resolution Length = 436 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From Burkholderia Cenocepacia Length = 437 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 673 bits (1738), Expect = 0.0
Identities = 201/559 (35%), Positives = 306/559 (54%), Gaps = 30/559 (5%)
Query: 2 EKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVAL 61
E+ Q+ + +S N++ F S P I +P +S DY+ + L
Sbjct: 28 EQAVSQVMEKQSNNNNSDVIFRSKLPDIYIPNH---LSLHDYIFQNISEFA----TKPCL 80
Query: 62 INSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI 121
IN TG ++S+ + +A+ + +++ND +L N E + + + G
Sbjct: 81 INGPTGHVYTYSDVHVISRQIAANFHKL-GVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139
Query: 122 ISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPEFDSMTMS 177
+ ANP T +EI++Q + SN + + V K+ L++ + ID E +
Sbjct: 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEG 199
Query: 178 WNSKHEL-----------DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA 226
EL D ++ DV A+ YSSGTTG KGVMLTH+ L +VA
Sbjct: 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 259
Query: 227 SSPKRVSPA---VMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRV 282
+ V+L +P FHIY L + ++M +F++ ++L+ ++ +V
Sbjct: 260 GENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKV 319
Query: 283 THAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
T A + PPIV+A++K T+ YDLSS+ V GAAPLGK+ A +KFP L Q YG+
Sbjct: 320 TVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379
Query: 343 TESTAGVFRTVGPDE---CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399
TE+ + ++G + + G+ G + E KIVDP+TGDSL + GE+ IRG I
Sbjct: 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 439
Query: 400 MKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHL 459
MKGY+ P T+ T+ DGW+ TGD+ ID+D LFIVDRLK+LIKYKG+QVAPAELE L
Sbjct: 440 MKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEAL 499
Query: 460 LLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAF 519
L+ H ++ D AV+ +E AG++P+AFVV+ S L+E ++ +FV++QV YK+I +V F
Sbjct: 500 LIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFF 559
Query: 520 INAIPKSAAGKILRMELRK 538
+IPK+ +GKILR +LR
Sbjct: 560 TESIPKAPSGKILRKDLRA 578
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 651 bits (1681), Expect = 0.0
Identities = 192/537 (35%), Positives = 294/537 (54%), Gaps = 28/537 (5%)
Query: 19 TKTFHSLRPPIDLPPEDAPISAVDYV-SSLRATLPWRDDDTVALINSVTGLRVSFSEFTR 77
F S P I +P + YV +L LIN G ++++
Sbjct: 6 EFIFRSKLPDIYIPKN---LPLHSYVLENLS-----NHSSKPCLINGANGDVYTYADVEL 57
Query: 78 RTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137
+AS L + + + D + +S E + + G II+ ANP +T +E+++
Sbjct: 58 TARRVASGLNKI-GIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKH 116
Query: 138 IQLSNPVIAFATSSVVHKLAKLK----HRTILIDSPE-----FDSMTMSWNSKHELDRAK 188
+ S + + K+ + + +DS F +T + ++E +
Sbjct: 117 AKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQA--DENEAPQVD 174
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA---VMLFTMPYFH 245
+ DV A+ YSSGTTG KGVMLTH+ L +VA + V+L +P FH
Sbjct: 175 ISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFH 234
Query: 246 IYGLFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
IY L + ++M +F++ +L +E+++V+ A V PP++++++K D +
Sbjct: 235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKH 294
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG---PDECRRW 361
DLSSL + G APLGK+ +KFP+ L Q YG+TE+ + + +
Sbjct: 295 DLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKP 354
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
G+ G + E KIVDPETG SLP + GE+ IRG IMKGY+ +PE TS T+ +GW+
Sbjct: 355 GACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLH 414
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ 481
TGD+ YID+D LFIVDRLK+LIKYKG+QVAPAELE LL++H E++DAAV+ DE+AG+
Sbjct: 415 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGE 474
Query: 482 MPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
+P+AFVV+ S E EI +++++QV YK+I+RV FI AIPK+ +GKILR L++
Sbjct: 475 VPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 638 bits (1647), Expect = 0.0
Identities = 168/540 (31%), Positives = 274/540 (50%), Gaps = 29/540 (5%)
Query: 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNS 81
P L +A + + T+A ++ + ++++E+ +
Sbjct: 8 KKGPAPFYPLED----GTAGEQLHK-AMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVR 62
Query: 82 LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
LA ++ L+ N V S NS++ + L +GV ++PAN + E E+ + +S
Sbjct: 63 LAEAMKRY-GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNIS 121
Query: 142 NPVIAFATSSVVHKLAK------LKHRTILIDSPEFDSMTMSW------------NSKHE 183
P + F + + K+ + + I++DS S N
Sbjct: 122 QPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF 181
Query: 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA--VMLFTM 241
+ + +A IM SSG+TG KGV L HR + + +L +
Sbjct: 182 VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVV 241
Query: 242 PYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
P+ H +G+F V+M RF+ ++ L++++++++ A + P + +K
Sbjct: 242 PFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI 301
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361
D YDLS+L +A G APL K+ A A +F + Q YGLTE+T+ + + P+ +
Sbjct: 302 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI--LITPEGDDKP 359
Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421
G+ G++ EAK+VD +TG +L + GEL +RGP IM GYV PE T+A + DGW+
Sbjct: 360 GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLH 419
Query: 422 TGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQ 481
+GD+ Y DED FIVDRLK LIKYKGYQVAPAELE +LL H + DA V PD++AG+
Sbjct: 420 SGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGE 479
Query: 482 MPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR-RVAFINAIPKSAAGKILRMELRKVA 540
+P A VV + ++ E EI+++VA QV+ KK+R V F++ +PK GK+ ++R++
Sbjct: 480 LPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 539
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 633 bits (1636), Expect = 0.0
Identities = 166/547 (30%), Positives = 274/547 (50%), Gaps = 30/547 (5%)
Query: 15 FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSE 74
+ +P + SA + + + +A N+VTG+ S++E
Sbjct: 4 MENDENIVVGPKPFYPIEE----GSAGTQL--RKYMERYAKLGAIAFTNAVTGVDYSYAE 57
Query: 75 FTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134
+ ++ L LQN L + + S N E I + L +GV ++P N + T E+
Sbjct: 58 YLEKSCCLGKALQNY-GLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLREL 116
Query: 135 SRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNSKHELDRAK 188
+ +S P I F++ + K+ ++ +++DS ++ + +
Sbjct: 117 VHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPP 176
Query: 189 VC------------QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA--SSFASSPKRVSP 234
+ VA IM SSG+TG KGV LTH N+ + +
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPG 236
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
+L +P+ H +G+F V++ +FD + LK +++++ T + P +
Sbjct: 237 TAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
++K + YDLS+L +A G APL K+ A A +F + Q YGLTE+T+ + +
Sbjct: 297 LNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI--IIT 354
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
P+ + G++G++ +AK++D +T SL P + GE+ ++GP +MKGYV PE T +
Sbjct: 355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 415 LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474
+GW+ TGD+ Y DE+ FIVDRLK LIKYKGYQV PAELE +LL H + DA V
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474
Query: 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR-RVAFINAIPKSAAGKILR 533
PD AG++P A VV + ++ E E+M++VA QVS K++R V F++ +PK GKI
Sbjct: 475 PDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 534 MELRKVA 540
+R++
Sbjct: 535 RAIREIL 541
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 528 bits (1363), Expect = 0.0
Identities = 157/547 (28%), Positives = 251/547 (45%), Gaps = 45/547 (8%)
Query: 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT------GLRVSFSEF 75
+ P + P IS D + + + A+I++ ++F E
Sbjct: 7 YKIGFPSLYYPK----ISLADRIDAAAEKFG----EKTAIISAEPKFPSEFPESMNFLEI 58
Query: 76 TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135
T LAS + + K + V NSI+ + ++L + P NP+ E+
Sbjct: 59 CEVTKKLASGISRK-GVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELE 117
Query: 136 RQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPEFDSMT--MSWNSKHELDRAKV 189
+ S S + + +T + + E +S++ M S+ +
Sbjct: 118 HILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSEDFENVKVN 177
Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
+ DVA I Y+ GTTG KGVMLTH NL A ++ ++ MP FH
Sbjct: 178 PEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLS-HMDTIVGCMPMFHSAEF 236
Query: 250 ---FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGY 304
VVM F+ +M+ + +E+++ T + PP + + S Y
Sbjct: 237 GLVNLMVTVGN---EYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTY 293
Query: 305 DLSSLETVACGAAPLGKDTIMAFASKF------PKVVLVQAYGLTESTAGVFRTVGP-DE 357
D S L+ A GA P+ + P++ Q +G+TE+ V T P
Sbjct: 294 DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV--TTNPPLR 351
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP- 416
+ + G + +E K++ E G L G+ GE+ IRGP I KGY +
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYD 411
Query: 417 ---DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIP 473
+ RTGD+ +IDE+GFL DR+K++IKYKGY +AP ELE LL+ H V D AVI
Sbjct: 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIG 471
Query: 474 YPDEEAGQMPMAFVVRQP--HSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKI 531
PDEEAG++P AF+V +P ++E +I+E+V ++S YK++R V F+ +P++A+GK+
Sbjct: 472 KPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKL 531
Query: 532 LRMELRK 538
LR LR+
Sbjct: 532 LRRLLRE 538
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 421 bits (1086), Expect = e-143
Identities = 133/492 (27%), Positives = 231/492 (46%), Gaps = 16/492 (3%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
D +A+ + G ++S++E R +A+ L L D + S+E +LY
Sbjct: 14 DDPHKLAIETA-AGDKISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT---ILIDSPE 170
+ + G + P N T E+ I + P I S +A + + + P+
Sbjct: 72 ATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD 131
Query: 171 FDSMTMSWNSKHELDRAKVCQS--DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
+ A + + D+AAI+Y+SGTTGR KG ML+H NL + +
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW 191
Query: 229 PKRVSPA-VMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAA 286
R +P V++ +P +H +GLF + + + +FD +L + R T
Sbjct: 192 --RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLM 247
Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
P + + + G+APL DT +++K +++ YG+TE+
Sbjct: 248 GVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMTETN 306
Query: 347 AGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGE 406
D R G+ G G+ A++ DPETG LP G G + ++GP + KGY
Sbjct: 307 MNTSNP--YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRM 364
Query: 407 PEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREV 466
PE T + DG+ TGDL IDE G++ I+ R KDL+ G+ V P E+E + + V
Sbjct: 365 PEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGV 424
Query: 467 ADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKS 526
++AVI P + G+ A VVR ++++EA+++ + Q++ +K ++V F++ +P++
Sbjct: 425 VESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRN 484
Query: 527 AAGKILRMELRK 538
GK+ + LR+
Sbjct: 485 TMGKVQKNVLRE 496
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-136
Identities = 139/488 (28%), Positives = 230/488 (47%), Gaps = 15/488 (3%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
A + T +R+++++ N A L ++K D +L NS+E L++
Sbjct: 31 RLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAA 89
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPEFD 172
LG + P N E+S + S + + + ++ + + D D
Sbjct: 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD 149
Query: 173 SMTMSWNSKHELDR-AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR 231
S+ S + + D IMY+SGTTG KGV+ TH ++ +A +S ++
Sbjct: 150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI--D 207
Query: 232 VSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP 290
V +L +P FH+ L +A T + M +FD + + E RV P
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPA 267
Query: 291 IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
I+ M + D G AP+ + I +A+K + +VQ Y LTES G
Sbjct: 268 ILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKN--IEVVQGYALTESCGGGT 325
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVT 410
+ D R+ GS GR + + + + G G EGE+ I+ ++K Y PE T
Sbjct: 326 LLLSEDALRKAGSAGRATMFTDVAVRGDD-GVIREHG-EGEVVIKSDILLKEYWNRPEAT 383
Query: 411 SATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470
+GW RTGD+ ID++G+L+I DRLKD+I G V PAE+E +++ V++ A
Sbjct: 384 RDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVA 442
Query: 471 VIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGK 530
VI PDE+ G++ A VV + ++E +I+E+ +++ YK ++V F AIP++ GK
Sbjct: 443 VIGLPDEKWGEIAAAIVVADQN-EVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGK 501
Query: 531 ILRMELRK 538
IL+ LR+
Sbjct: 502 ILKTVLRE 509
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 398 bits (1025), Expect = e-134
Identities = 139/492 (28%), Positives = 214/492 (43%), Gaps = 25/492 (5%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D A + V G+R++ ++ R LAS L + D +LS N E+ L ++
Sbjct: 21 DRTAFM--VDGVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA 77
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSS-------VVHKLAKLKHRTILIDSP 169
+G I+ P N EI+ + P + A + V+ L +K + D
Sbjct: 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS 137
Query: 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP 229
+ S + +D I++++ GR +G +++ NL A +S +
Sbjct: 138 GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW- 196
Query: 230 KRVSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVT 288
R++ A V L +P FH+ GL +V+ +FD + +E +VT A
Sbjct: 197 -RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEF 255
Query: 289 PPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348
P++ + L+SL V P TI F + P +G +E++
Sbjct: 256 APMLGNILD--QAAPAQLASLRAVTGLDTPE---TIERFEATCPNATFWATFGQSETSGL 310
Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPE 408
T P R S GR +VD E LPPG+ GE+ +RGPT+ KGY
Sbjct: 311 S--TFAPYR-DRPKSAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAA 366
Query: 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL--KDLIKYKGYQVAPAELEHLLLSHREV 466
T +GW TGD+ D DG+LF R K+LIK G V PAE+E L H +
Sbjct: 367 ATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAI 425
Query: 467 ADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKS 526
ADA VI PD + + A V +P S+ + EFVA ++ YKK + V F+ A+PK
Sbjct: 426 ADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKD 485
Query: 527 AAGKILRMELRK 538
A G I R ++
Sbjct: 486 AKGAIDRAAVKT 497
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 384 bits (990), Expect = e-129
Identities = 109/501 (21%), Positives = 215/501 (42%), Gaps = 42/501 (8%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
+A+ + ++ + LA L + + + NSI+ IL +
Sbjct: 16 HHIAITDG--QESYTYQNLYCEASLLAKRL----KAYQQSRVGLYIDNSIQSIILIHACW 69
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL----------- 165
+ I+ N T +E++ Q++ + + F T + + ++ +
Sbjct: 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNG 129
Query: 166 -------IDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT 218
I + + S + D+A+IM++SGTTG K V T RN
Sbjct: 130 LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHY 189
Query: 219 AAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277
A+ S L +P +HI GL RA T ++ +F+ + +L +
Sbjct: 190 ASAIGCKESL--GFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMI 247
Query: 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
+ R+TH ++ P + + + G + Y+L + G A L I + +
Sbjct: 248 KNERITHISLVPQTLNWLMQQGLHEPYNLQK---ILLGGAKLSATMIETALQYN--LPIY 302
Query: 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
++G+TE+ + R + G SA ++ KI +P GEL I+G
Sbjct: 303 NSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEG------HGELMIKGA 356
Query: 398 TIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELE 457
+M GY+ ++T +G+ TGD+ ID +G++ I DR KDLI G + P ++E
Sbjct: 357 NVMNGYLYPTDLTGT--FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIE 414
Query: 458 HLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRV 517
+ ++DA + +PD+ GQ+P + V S +++A+++ ++++ ++ YK +
Sbjct: 415 TVAKQFPGISDAVCVGHPDDTWGQVPKLYFV--SESDISKAQLIAYLSKHLAKYKVPKHF 472
Query: 518 AFINAIPKSAAGKILRMELRK 538
++ +P ++ GK+ R +L +
Sbjct: 473 EKVDTLPYTSTGKLQRNKLYR 493
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-128
Identities = 119/493 (24%), Positives = 211/493 (42%), Gaps = 20/493 (4%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
D AL GLR++ +E R ++A+ L L V++ NS ++ I +L
Sbjct: 17 DHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALH 75
Query: 117 SLGVIISPANPVNTESEISRQIQLSNP--VIAFATSSVVHKLAKLKHRTILIDSPEFDSM 174
LG + + NP +E++ I+ + V + + +I +
Sbjct: 76 RLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRD 135
Query: 175 TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
++ ++ + + A I Y+SGTTG K ++ R + V R
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR 195
Query: 235 A-VMLFTMPYFHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI 291
V+L MP +H+ G F AAL T VV++ F L+ V++ +VT TP
Sbjct: 196 HNVVLGLMPLYHVVGFF-AVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 292 VVAM--SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349
+ A+ + + L SL V A + + P V YG TE+ +
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSL 313
Query: 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSIRGP-TIMKGYVGE 406
+ + G+ E +IV G + G+EGEL + + GY+ +
Sbjct: 314 YMRQ-----PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQ 368
Query: 407 PEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREV 466
P+ T+ L DGW RT D+ +G + I+ R+ D+I G + P+E+E +L + V
Sbjct: 369 PQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427
Query: 467 ADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV-ARQVSPYKKIRRVAFINAIPK 525
+ VI D+ GQ A VV + +L+ + F + +++ +K+ +R ++ +PK
Sbjct: 428 TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPK 487
Query: 526 SAAGKILRMELRK 538
+A K+LR +L +
Sbjct: 488 NALNKVLRRQLVQ 500
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 384 bits (990), Expect = e-128
Identities = 130/531 (24%), Positives = 220/531 (41%), Gaps = 42/531 (7%)
Query: 42 DYVSSLRATLPWRDD--------------DTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
+ + R W + D +A+ S+ E R + LA+ Q
Sbjct: 11 ELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQ 68
Query: 88 NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
+ + + D V N E + F+L LG + A P + SEI+ + +
Sbjct: 69 KL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127
Query: 148 ATSS------------VVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195
+ V KL LK+ + ++ EF + + +V SDVA
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPL--EDLHTEPVKLPEVKSSDVA 185
Query: 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFR 254
+ S G+TG K + TH + ++ S + + V L +P H Y L
Sbjct: 186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--WLDHSTVYLAALPMAHNYPLSSPGV 243
Query: 255 AAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
L V+ +E +VT A+ PP+ + S+ DLSSL+ +
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303
Query: 313 ACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGL 371
G A + + F L Q +G+ E R P+E + G+ +S
Sbjct: 304 QVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTRLDDPEE-IIVNTQGKPMSPYD 361
Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED 431
E+++ D + PG+ G L RGP ++GY E +A+ DG+ RTGD+ + D
Sbjct: 362 ESRVWDD-HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD 420
Query: 432 GFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP 491
G++ + R KD I G +VA E+E+ LL+H V DAA++ PD+ G+ F++ +
Sbjct: 421 GYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD 480
Query: 492 HSSLNEAEIMEFV-ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541
+ AE+ F+ R ++ YK RV F+ + P++ GK+ + LR+
Sbjct: 481 E-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAIS 530
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-128
Identities = 122/527 (23%), Positives = 227/527 (43%), Gaps = 40/527 (7%)
Query: 23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSL 82
H +P S +L D AL ++++E +
Sbjct: 7 HHHHSSGLVPRGSHMSSLFP---ALSPAPTGAPADRPALR--FGERSLTYAELAAAAGAT 61
Query: 83 ASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSN 142
A R+ V +T ++E + + L GV P NP + + E++ + S
Sbjct: 62 AG------RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSA 115
Query: 143 P--VIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
P V+A + + L L+ + + + + D A ++Y+
Sbjct: 116 PSLVLAPPDAELPPALGALERVDVDVRARG------------AVPEDGADDGDPALVVYT 163
Query: 201 SGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALM 259
SGTTG KG ++ R L + + + + + V++ +P FH++GL
Sbjct: 164 SGTTGPPKGAVIPRRALATTLDALADAW--QWTGEDVLVQGLPLFHVHGLVLGILGPLRR 221
Query: 260 -ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG---YDLSSLETVACG 315
+ + RF + + + + T P + +++ D L+ + G
Sbjct: 222 GGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSG 280
Query: 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKI 375
+A L A+ +++ YG+TE+ +V D R G+ G G+E ++
Sbjct: 281 SAALPVHDHERIAAATG-RRVIERYGMTETLMNT--SVRADGEPRAGTVGVPLPGVELRL 337
Query: 376 VDPETGD--SLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGF 433
V+ + +L GE+ +RGP + Y+ P+ T+A DG+ RTGD+ D DG+
Sbjct: 338 VEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGY 397
Query: 434 LFIVDR-LKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV-RQP 491
+ IV R DLIK GY++ E+E+ LL H EV +AAV PD + G+ +A++V P
Sbjct: 398 VRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP 457
Query: 492 HSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
+ + + VA +++P+K+ R V +++A+P++ GKI++ L +
Sbjct: 458 AAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 382 bits (983), Expect = e-127
Identities = 123/537 (22%), Positives = 216/537 (40%), Gaps = 40/537 (7%)
Query: 42 DYVSSLRATLPWRDD--------------DTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
+ R W D ++A+I ++S+ E R + +LA+ L
Sbjct: 16 ERAQHYRNKGYWIDQPLTRILTVGVQSHPHSLAII--CGERQLSYIELDRLSTNLATRLA 73
Query: 88 NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
L K DTA V N E I++F+LL GV++ A + + E++ I+ P +
Sbjct: 74 EKG-LGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLI 132
Query: 148 ATSS------------VVHKLAKLKHRTILIDSPEFDSMT--MSWNSKHELDRAKVCQSD 193
+ + + +L + + ++ +D + +
Sbjct: 133 GSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADE 192
Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFC 252
VA S G+TG K + TH + +V +S ++ +L +P H + L
Sbjct: 193 VAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--GLNSNTRLLCALPAPHNFMLSSP 250
Query: 253 FRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310
L V+ + ++ +V A++ P V+ + + + SL+
Sbjct: 251 GALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLK 310
Query: 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSA 369
+ G A + L Q +G+ E R DE + + + GR +S+
Sbjct: 311 LLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEGLVNYTRLDDSDE-QIFTTQGRPISS 368
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429
E KIVD +P G+ G L+ RGP GY PE S D + +GDL
Sbjct: 369 DDEIKIVDE-QYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRT 427
Query: 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVR 489
DG L +V R+KD I G ++A E+E L+L H EV AA++ DE+ G+ AF+V
Sbjct: 428 PDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVS 487
Query: 490 QPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 546
+ + ++ YK ++ I ++P +A GK+ + +LR + S +S
Sbjct: 488 RNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTSTTS 544
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-126
Identities = 120/508 (23%), Positives = 213/508 (41%), Gaps = 29/508 (5%)
Query: 53 WRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112
D++A+I+ ++S+ E + ++LA L+ + +TA V N E+ I +
Sbjct: 36 HAASDSIAVIDG--ERQLSYRELNQAADNLACSLRRQG-IKPGETALVQLGNVAELYITF 92
Query: 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS------------VVHKLAKLK 160
F+LL LGV A + SE++ P + A V + + ++
Sbjct: 93 FALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIR 152
Query: 161 HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
+L DS E + + + +VA S GTTG K + TH + +
Sbjct: 153 VVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYS 212
Query: 221 VASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAV 277
V S + + L +P H Y + + T V+ + +
Sbjct: 213 VRRSVEIC--QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLI 270
Query: 278 EEFRVTHAAVTPPIVVAM--SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335
E+ +V A+ PP V + L+SL+ + G A L ++
Sbjct: 271 EKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG-CQ 329
Query: 336 LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGKEGELSI 394
L Q +G+ E R E + + G + E + D E G+ LP G+ G L
Sbjct: 330 LQQVFGMAEGLVNYTRLDDSAE-KIIHTQGYPMCPDDEVWVADAE-GNPLPQGEVGRLMT 387
Query: 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPA 454
RGP +GY P+ ++ +G+ +GDL ID +G++ + R KD I G ++A
Sbjct: 388 RGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE 447
Query: 455 ELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV-ARQVSPYKK 513
E+E+LLL H V AA++ DE G+ A++V L ++ F+ + ++ +K
Sbjct: 448 EIENLLLRHPAVIYAALVSMEDELMGEKSCAYLV--VKEPLRAVQVRRFLREQGIAEFKL 505
Query: 514 IRRVAFINAIPKSAAGKILRMELRKVAV 541
RV ++++P +A GK+ + +LR+
Sbjct: 506 PDRVECVDSLPLTAVGKVDKKQLRQWLA 533
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 372 bits (958), Expect = e-123
Identities = 128/533 (24%), Positives = 220/533 (41%), Gaps = 41/533 (7%)
Query: 28 PIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
++ PP + Y+ L T A I+ ++ E R AS L+
Sbjct: 15 TVEAPPAL--FNFAAYLFRLNETRA----GKTAYID--DTGSTTYGELEERARRFASALR 66
Query: 88 NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
+ + + ++ +++ +P+ + L GV+ AN + T ++ + S+
Sbjct: 67 TL-GVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125
Query: 148 ATSSVVHKLAKLKH-----RTILIDSPEFDSMTMSWNSKHEL--------DRAKVCQSDV 194
A+ ++V + + LI S +S EL A D+
Sbjct: 126 ASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDI 185
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGL---- 249
A +YSSG+TG+ KG + TH NL A +A ++ V+ F YGL
Sbjct: 186 AFWLYSSGSTGKPKGTVHTHANL-YWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGL 244
Query: 250 FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
F A TA++M +R + + E R T P + M + +
Sbjct: 245 TFPLSVGA---TAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVA 301
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLS 368
+ L ++ F + F ++ G TE +F + +G+TGR
Sbjct: 302 IRICTSAGEALPREIGERFTAHF-GCEILDGIGSTE-MLHIFLSNRAGA-VEYGTTGRPV 358
Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428
G E ++ D E G ++P G+ G+L I+GP+ Y E + AT W+R+GD
Sbjct: 359 PGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCR 416
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488
+G R D++K G V+P E+E +L+ H V +AAV+ AFVV
Sbjct: 417 LPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAFVV 475
Query: 489 RQP---HSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
+ S + E+ FV +++P+K R + F++ +PK+A GKI R +LR+
Sbjct: 476 LKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 2e-87
Identities = 112/529 (21%), Positives = 206/529 (38%), Gaps = 69/529 (13%)
Query: 54 RDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110
+ + AL L +F E + + A+ L L + D V+ E +
Sbjct: 55 KRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWL 114
Query: 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTIL 165
+ + G+I P ++I ++Q+S A V+ ++ + R L
Sbjct: 115 VILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKL 174
Query: 166 IDSPEFDSMTMSW-----NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
+ S + +++ + + + +AI ++SGT+G K ++
Sbjct: 175 LVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS----- 229
Query: 221 VASSFASSPKRVSPAVMLFTMPYFH----------------IYGLFFCFRAAALMETAVV 264
S + + I + +
Sbjct: 230 ------------SLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTF 277
Query: 265 MQ---RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321
+ +FD ++LK + + + PIV M Y L+ L
Sbjct: 278 VHLLPKFDPLVILKTLSSYPIKSMM-GAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLP 336
Query: 322 DTIMAFASKFPKVVLVQAYGLTESTA--GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPE 379
+T+ + ++ + + ++YG TE+ V +T+ + G G ++ + +I+D +
Sbjct: 337 ETLENWRAQT-GLDIRESYGQTETGLTCMVSKTMKI----KPGYMGTAASCYDVQIIDDK 391
Query: 380 TGDSLPPGKEGELSIRGPT-----IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434
G+ LPPG EG++ IR I GYV P+ T+A + + GD DEDG+
Sbjct: 392 -GNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYF 449
Query: 435 FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV----RQ 490
+ R D+I GY++ P+E+E+ L+ H V + AVI PD G++ AFVV
Sbjct: 450 QFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL 509
Query: 491 PHSSLN-EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
H E+ + V +PYK R++ F+ +PK+ GKI R +LR
Sbjct: 510 SHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 261 bits (669), Expect = 1e-80
Identities = 124/504 (24%), Positives = 220/504 (43%), Gaps = 52/504 (10%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
R +++E +R L L+ + + D L N YF++ +G ++ +
Sbjct: 47 RTTYAEVYQRARRLMGGLRALG-VGVGDRVATLGFNHFRHLEAYFAVPGMGAVL---HTA 102
Query: 129 NT---ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSP------EFDS 173
N EI+ + + + +++ + ++ +++D ++
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEE 162
Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN-----LTAAVASSFASS 228
+ + + Y++GTTG KGV+ +HR L A++ A S
Sbjct: 163 ALGEEADPVRVP-----ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALS 217
Query: 229 PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAA 286
K V+L +P FH+ + AA L+ V+ R D +++ + VT A
Sbjct: 218 EK----DVVLPVVPMFHVNAWCLPY-AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272
Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
P + +A++ + G+ L +L + G + + I F V + Q YGLTE T
Sbjct: 273 GVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTE-T 329
Query: 347 AGV---------FRTVGPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPP-GKE-GELSI 394
+ V ++ +E TG + ++ D E G +P GK GE+ +
Sbjct: 330 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQL 388
Query: 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPA 454
+GP I GY G E T + L PDG+ RTGD+ DE+G++ I DRLKDLIK G ++
Sbjct: 389 KGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSV 448
Query: 455 ELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKI 514
+LE+ L+ H +V +AAV+ P + + P+A VV + E + + ++
Sbjct: 449 DLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLP 508
Query: 515 RRVAFINAIPKSAAGKILRMELRK 538
F IP+++AGK L+ LR+
Sbjct: 509 DAYVFAEEIPRTSAGKFLKRALRE 532
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 249 bits (637), Expect = 1e-75
Identities = 111/520 (21%), Positives = 201/520 (38%), Gaps = 76/520 (14%)
Query: 69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
+F + ++ A++ + K D + + + L LG I PA +
Sbjct: 86 IFTFKDLKYYSDKAANFFVKH-GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHM 144
Query: 129 NTESEISRQIQLSNP--VIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNS 180
+I +I+ + ++ A V ++ + + + +
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFR- 203
Query: 181 KHELDRA-----------KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP 229
EL+ + D+ + +SSGT G K V +
Sbjct: 204 -KELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGH--------- 253
Query: 230 KRVSPAVMLFTMPYFH----------------IYGLFFCFRAAALMETAVVM---QRFDL 270
+ T Y+ ++ + AV + RF+
Sbjct: 254 --------ILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEA 305
Query: 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330
K ML+ ++ VT PP + Y+ S+L+ PL + F
Sbjct: 306 KNMLEKASKYGVTTFC-APPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364
Query: 331 FPKVVLVQAYGLTESTA--GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK 388
+ L++ +G TE+ F + P + GS G+ + G + +++D + G G+
Sbjct: 365 T-GIKLMEGFGQTETVVTIATFPWMEP----KPGSIGKPTPGYKIELMDRD-GRLCEVGE 418
Query: 389 EGELSIRGPT-----IMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDL 443
EGE+ I + Y +PE T T DG+ TGD+ ++DEDG+L+ V R D+
Sbjct: 419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDI 477
Query: 444 IKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEA---EI 500
IK GY+V P E+E L+ H V + A+ PD GQ+ A +V + +++ E+
Sbjct: 478 IKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNEL 537
Query: 501 MEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
+ V +PYK R + F+ +PK+ +GKI R+E+R
Sbjct: 538 QDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKD 577
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 2e-62
Identities = 114/562 (20%), Positives = 204/562 (36%), Gaps = 77/562 (13%)
Query: 45 SSLRATLPWR-----DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAF 99
SL + R + + +N +++ + + ++A+ LQ D
Sbjct: 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVL 69
Query: 100 VLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR---QIQLSNPVIAFATSSVVHKL 156
+L + + + L G I P P E + + + S PVI + + K
Sbjct: 70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF 129
Query: 157 AK--LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
L + P ++ N + +D+A + Y+SG+T KGVM++H
Sbjct: 130 TADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSH 189
Query: 215 RNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF-------RAAALMETAVV 264
NL + +SF + + ++ +P H GL C A +M
Sbjct: 190 HNLLDNLNKIFTSFHMNDET----IIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSF 245
Query: 265 MQRFDLKMMLKAVEEFRVTHAAVTPP----IVVAMSKGGSTDGYDLSSLETVACGAAPLG 320
+Q LK + +++ T + P V + +G DLSS T GA P+
Sbjct: 246 LQN--PLSWLKHITKYKATISGS-PNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302
Query: 321 KDTIMAFASKF-----PKVVLVQAYGLTESTAGV-FRTVGPDECRRWGSTGRLSAGL--- 371
++T+ F F K YGL E+T V T G + +
Sbjct: 303 EETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHF 362
Query: 372 -------------------EAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA 412
E KI+DP+T + GE+ ++ ++ KGY +PE T
Sbjct: 363 ADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRH 422
Query: 413 TL--------LPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHR 464
++RTGDL ++ + L++ R+KDLI G P ++E L+
Sbjct: 423 AFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSP 481
Query: 465 EV---ADAAVIPYPDEEAGQMPMAFVVRQPHSS-LNEAEIMEFVARQVSP--YKKIRRVA 518
A +E ++ + V+ + + + + V ++ +
Sbjct: 482 LHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIV 541
Query: 519 FI--NAIPKSAAGKILRMELRK 538
I A+P + +GKI R RK
Sbjct: 542 LIPLKAMPHTTSGKIRRNFCRK 563
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 3e-53
Identities = 92/486 (18%), Positives = 167/486 (34%), Gaps = 80/486 (16%)
Query: 23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWR-----DDDTVALINSVTG-----LRVSF 72
H L P + +S SL A L D ++ + +++
Sbjct: 6 HHHHHSSGLVPRGSHMSV----RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTW 61
Query: 73 SEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTES 132
S+ RRT ++A L D + + +E + + L G I P +
Sbjct: 62 SQLYRRTLNVAQELSRCGS--TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGV 119
Query: 133 EISR---QIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TMSWNSKHELDRAK 188
R + S+PV TSS V + + R P + + ++ + +
Sbjct: 120 TDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKE 179
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPA--VMLFTMPY 243
A + Y+SG+T GV+++H+N+ + S + + + P ++ +P+
Sbjct: 180 DEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPF 239
Query: 244 FHIYGLFFCF-------RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP----IV 292
+H GL A L +QR + + +A P +
Sbjct: 240 YHDMGLVIGICAPILGGYPAVLTSPVSFLQRPAR--WMHLMASDFHAFSAA-PNFAFELA 296
Query: 293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF-----PKVVLVQAYGLTESTA 347
+ G DL ++ T+ G+ + TI FA +F + V+ +Y L E+T
Sbjct: 297 ARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATV 356
Query: 348 GV-----------------------FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
V + S + +IVD +T
Sbjct: 357 YVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSP-IVRIVDSDTCIEC 415
Query: 385 PPGKEGELSIRGPTIMKGYVGEPEVTSATL-----------LPDGWMRTGDLCYIDEDGF 433
P G GE+ + G + GY +P+ + T W+RTGD ++ DG
Sbjct: 416 PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGK 474
Query: 434 LFIVDR 439
+FI+ R
Sbjct: 475 MFIIGR 480
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 1e-32
Identities = 97/417 (23%), Positives = 163/417 (39%), Gaps = 44/417 (10%)
Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
S + + + + +T+ + + D+ V + + I+Y+
Sbjct: 98 SGAELLIHAAGLSIDAVGQQIQTVSAEELLENE-----GGSVSQDQW-VKEHETFYIIYT 151
Query: 201 SGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA- 256
SG+TG KGV ++ + T + + F S ++ + P F F +
Sbjct: 152 SGSTGNPKGVQISAANLQSFTDWICADFPVSGGKI---FLNQA-P--------FSFDLSV 199
Query: 257 -----ALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
L + K++ + +++ + TP V L
Sbjct: 200 MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLL 259
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST- 364
+T L A +FPK + YG TE+T V + D R S
Sbjct: 260 PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLP 319
Query: 365 -GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD--GWM- 420
G + I+D E G LP G++GE+ I GP++ +GY+GEPE+T W
Sbjct: 320 VGFAKPDMNIFIMDEE-GQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAY 378
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480
RTGD +I +DG +F RL IK GY++ E+E + + V A VIPY
Sbjct: 379 RTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTV 437
Query: 481 QMPMAFVVRQPHSSLNE----AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILR 533
+ +A +V + H E + I + +A + Y R+ + + I +A GKI R
Sbjct: 438 EYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDR 494
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-32
Identities = 47/262 (17%), Positives = 77/262 (29%), Gaps = 31/262 (11%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYF-HIY 247
+ S GTTG K V+ + A ++ + R L +P HI
Sbjct: 90 ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIV 149
Query: 248 GLFFCFRAAAL----------------------METAVVMQRFDLKMMLKAVEEFRVTHA 285
G RA L T + + + +
Sbjct: 150 GAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFL 209
Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTE 344
TPP++ + K SL + G L D I AS+ P +YG T
Sbjct: 210 VTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269
Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGY- 403
+ + E ++ S + +VD T ++ G+ G + + +
Sbjct: 270 ALGVSRSLLITSESQQ-VIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT--HLSPWAF 326
Query: 404 -VGEPEVTSATLLPDGWMRTGD 424
E +A LP GD
Sbjct: 327 YPRVAERDTAIRLPGVSGFAGD 348
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-30
Identities = 96/406 (23%), Positives = 165/406 (40%), Gaps = 40/406 (9%)
Query: 155 KLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
+ L R + D+ + D + + A V + I+Y+SG+TG KGV +T+
Sbjct: 109 TVTDLPVRIVSEDNLK-DIFFTHKGNTPNPEHA-VKGDENFYIIYTSGSTGNPKGVQITY 166
Query: 215 R---NLTAAVASSFASSPKRVSPAVMLFTMPY------FHIYGLFFCFRAAALMETA-VV 264
+ T F +V + P+ IY +L+ +
Sbjct: 167 NCLVSFTKWAVEDFNLQTGQV---FLNQA-PFSFDLSVMDIYP--------SLVTGGTLW 214
Query: 265 M----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG 320
K + ++E+ + TP S L +++T L
Sbjct: 215 AIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLP 274
Query: 321 KDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST--GRLSAGLEAKIVD 377
+ +FPK ++ YG TE+T V V + ++ S G + I+
Sbjct: 275 NEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK 334
Query: 378 PETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSA--TLLPDGWM-RTGDLCYIDEDGFL 434
+ G P G++GE+ I GP++ GY+G PE+T T++ +TGD Y+ E+G L
Sbjct: 335 ED-GTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLL 392
Query: 435 FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS 494
F RL IK GY++ E+EH L + V A ++P E +A VV HS
Sbjct: 393 FYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSF 452
Query: 495 LNE----AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 536
E + I + + ++ Y R+ + ++IP + GK+ R +L
Sbjct: 453 EKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 9e-30
Identities = 72/380 (18%), Positives = 134/380 (35%), Gaps = 32/380 (8%)
Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
S +AF + + +L + +S ++ ++ A ++Y+
Sbjct: 125 SRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNN-YPENLDAYLLYT 183
Query: 201 SGTTGRVKGVMLTHRNLTAAVAS------SFASSPKRVSPA--VMLFTMPYF--HIYGLF 250
SG+TG KGV ++ NL++ + + A + + F HI +F
Sbjct: 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMF 243
Query: 251 FCFRAAALMETAVVMQRFDLKM--MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
+R V + + + E VTHA + P ++ D
Sbjct: 244 LAWRFGL----CAVTGERLSMLDDLPRTFRELGVTHAGIVP----SLLDQTGLVPEDAPH 295
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST---G 365
L + G + T ++S +V LV YG TE T + + G T G
Sbjct: 296 LVYLGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVT--IGCSAGR--ILPDSDTRCIG 350
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWM-RTGD 424
A ++ P + + + G GEL I G + GY+ P+ + M RTGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484
+ +D D + + R + +K +G ++ E+ ++ S V +
Sbjct: 411 IVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQF 470
Query: 485 --AFVVRQPHSSLNEAEIME 502
+FV + E +
Sbjct: 471 LVSFVASSGAAVRGELRWIN 490
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-28
Identities = 79/391 (20%), Positives = 137/391 (35%), Gaps = 41/391 (10%)
Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
S + + A+L + + D T + A + +D A IMY+
Sbjct: 560 SAAACLLTHQEMKEQAAELPYTGTTLFI---DDQTRFEEQASDPATA-IDPNDPAYIMYT 615
Query: 201 SGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPY------FHIYGLFFCF 253
SGTTG+ KG + TH N+ V S L Y F Y
Sbjct: 616 SGTTGKPKGNITTHANIQGLVKHVDYM---AFSDQDTFLSVSNYAFDAFTFDFYA----- 667
Query: 254 RAAALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
+++ A +++ D + + + + V T + ++ +
Sbjct: 668 ---SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLT---DAGEDWMKG 721
Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST-GR 366
L + G + L+ YG TE T V G+
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGK 781
Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-----GWM- 420
+ I++ E P G GEL I G + KGYV ++T + + +
Sbjct: 782 PISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLY 840
Query: 421 RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAG 480
RTGDL DG + R+ D +K +G+++ E+E L + V DA V+ E
Sbjct: 841 RTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGD 900
Query: 481 QMPMAFVVRQPHSSLNEAEIMEFVARQVSPY 511
A++V + L+ ++ + +Q+ Y
Sbjct: 901 ASINAYLV--NRTQLSAEDVKAHLKKQLPAY 929
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-28
Identities = 77/369 (20%), Positives = 131/369 (35%), Gaps = 37/369 (10%)
Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA--VMLFTMPY------ 243
D I+++SGTTG+ KGV ++H NL + + V ++ PY
Sbjct: 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQP-PYSFDLSV 203
Query: 244 FHIYGLFFCFRAAALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
+ L + D K + + + V TP
Sbjct: 204 MYWAP--------TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS 255
Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDE 357
+ +L L T +FP ++ AYG TE+T + + +
Sbjct: 256 DDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315
Query: 358 CRRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL 415
+ G I+D + G L G++GE+ + GP + KGY+ PE T+
Sbjct: 316 VDNYTRLPIGYPKPDSPTYIIDED-GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFF 374
Query: 416 PD--GWM-RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
TGD+ + ED L RL IKY GY++ ++ L VA A +
Sbjct: 375 TFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAV 434
Query: 473 PYPDEEAGQMPM-AFVVRQPHSSLNE-------AEIMEFVARQVSPYKKIRRVAFINAIP 524
P ++E + A++V + I V + Y + + +++P
Sbjct: 435 PRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLP 494
Query: 525 KSAAGKILR 533
+ GKI
Sbjct: 495 LTPNGKIDI 503
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 6e-27
Identities = 87/414 (21%), Positives = 161/414 (38%), Gaps = 49/414 (11%)
Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
S + +VH + ++ + F+ T+ L +D+A ++Y+
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEI---FEEDTIKIREGTNLHVP-SKSTDLAYVIYT 190
Query: 201 SGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA- 256
SGTTG KG ML H+ NL +S + K + F F A+
Sbjct: 191 SGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDR---IGQFA-S--------ISFDASV 238
Query: 257 -----ALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
AL+ A + + D + + + +T + P VV + D +
Sbjct: 239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERI 292
Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGSTG 365
S++T+ + + + KV + AYG TE+T + G
Sbjct: 293 LSIQTLITAGSATSPSLVNKW---KEKVTYINAYGPTETTICATTWVATKETIGHSVPIG 349
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-----GWM 420
+ IVD G+ GEL I G + +GY PE+TS + + +
Sbjct: 350 APIQNTQIYIVDEN-LQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKL 408
Query: 421 -RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEA 479
+TGD DG + + R+ + +K +G++V E+E +LL H +++ AV + D +
Sbjct: 409 YKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQE 468
Query: 480 GQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILR 533
A+ V + ++ +F + ++ Y ++ +P ++ GKI R
Sbjct: 469 QPYLCAYFV--SEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDR 520
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-25
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 10/179 (5%)
Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDL 425
G++ +VD E G EG L I P + G+ E T +GD
Sbjct: 443 GVQPALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501
Query: 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMA 485
DEDG+ +I R+ D++ G+++ AE+E L++H ++A+AAV+ P GQ A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 486 FVV----RQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
+V +P L AE+ +V +++ P + + +++PK+ +GKI+R LRK+A
Sbjct: 562 YVTLNHGEEPSPEL-YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 52/186 (27%), Positives = 99/186 (53%), Gaps = 15/186 (8%)
Query: 370 GLEAKIVDPETGDSLPPGK-EGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGD 424
G++A ++DP TG+ L EG L+++ P+ + + T L G+ TGD
Sbjct: 450 GIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGD 509
Query: 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPM 484
D+DG+++I+ R+ D++ G++++ AE+E ++ VA+ AV+ + D+ GQ
Sbjct: 510 GAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVA 569
Query: 485 AFVVRQPHSSLNEA----------EIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRM 534
AFVV + SS + A ++ V + + P+ + + ++ +PK+ +GKI+R
Sbjct: 570 AFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRR 629
Query: 535 ELRKVA 540
LRK+
Sbjct: 630 ILRKIL 635
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-24
Identities = 70/319 (21%), Positives = 113/319 (35%), Gaps = 34/319 (10%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPY------FH 245
+A I +SSGTTGR K + TH +T +P L P
Sbjct: 165 QIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFL---AFAPQMRFLVNSPLSFDAATLE 221
Query: 246 IYGLFFCFRAAALMETA-VVM---QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
I+G AL+ V+ D ++ + + E A +T + +
Sbjct: 222 IWG--------ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLV---DL 270
Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRR 360
D L L + G L + + P++ LV YG TE+T V D+
Sbjct: 271 DPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE 330
Query: 361 WGST-GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-- 417
G+ AG ++D + P + GE+ G + +GY + T A+ +
Sbjct: 331 DDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPY 390
Query: 418 ----GWM-RTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472
RTGD DE G L + R +K GY++ LE + D A++
Sbjct: 391 RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALL 450
Query: 473 PYPDEEAGQMPMAFVVRQP 491
Q+ A+ +
Sbjct: 451 VRERNGVKQLLCAWTGKAD 469
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 81/388 (20%), Positives = 141/388 (36%), Gaps = 69/388 (17%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPA-VMLFTMPYF 244
V + V + SSGTTG+ V T R A S ++ P + Y
Sbjct: 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAG--GRPGDTLHNAFGY- 145
Query: 245 HIYGLF---FCFRAAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
GLF A +V M + ++ + +F VTP ++ +
Sbjct: 146 ---GLFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEM 202
Query: 300 STDGYDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPD 356
G D SSL+ GA P + ++ + + YGL+E GV
Sbjct: 203 VRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVAC----- 256
Query: 357 ECRRWGSTGRLSAG---LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSAT 413
EC + E I+DP TG+ LP G +GEL V T +
Sbjct: 257 ECVETKDGPVIWEDHFYPE--IIDPVTGEVLPDGSQGEL-----------V----FT--S 297
Query: 414 LLPDGW----MRTGDLCYID-EDG-----FLFIVDRLKDLIKYKGYQVAPAELEHLLLSH 463
L + RT DL + I R D++ +G V P+++E ++++
Sbjct: 298 LTKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL 357
Query: 464 REVADAA-VIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINA 522
++ + D ++ +A +R ++ +AR++ +I+ + +++
Sbjct: 358 PLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQ--HRIKTMVGVSS 415
Query: 523 ---------IPKSAAGKILRME-LRKVA 540
IP +A GK R+ R+ A
Sbjct: 416 GVTVLAAGGIPATATGKARRVIDRRQAA 443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 9e-14
Identities = 76/313 (24%), Positives = 111/313 (35%), Gaps = 64/313 (20%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPA-VMLFTMPYF 244
V Q ++ I SSGTTG+ V T VA S ++ + + Y
Sbjct: 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAG--ARRGDKVHVSYGY- 143
Query: 245 HIYGLF---FCFRAAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
GLF A V + ++ +++FR VTP +++++
Sbjct: 144 ---GLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEI 200
Query: 300 STDGYDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA-GVFRTVGPD 356
G D SSL GA P D +A + + V YGL+E GV
Sbjct: 201 ERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVAS----- 254
Query: 357 ECRRWGSTGRLSAGLE-------AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEV 409
EC G +I+DPETG+ LP G+ GEL V
Sbjct: 255 ECVETKD------GPTIWEDHFYPEIIDPETGEVLPDGELGEL-----------V----F 293
Query: 410 TSATLLPDGW----MRTGDLCYID-EDG-----FLFIVDRLKDLIKYKGYQVAPAELEHL 459
T +L + RT DL + I R D++ +G V P ++E
Sbjct: 294 T--SLTKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQ 351
Query: 460 LLSHREVADAAVI 472
LL R +A I
Sbjct: 352 LLKQRALAPHYQI 364
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 80/390 (20%), Positives = 141/390 (36%), Gaps = 82/390 (21%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPA-VMLFTMPYFHI 246
+ D I SSGTTG ++ + + VA + V + Y
Sbjct: 85 KRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVG--IRKTDVFQNSSGY--- 139
Query: 247 YGLF---FCFRAAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
G+F F+ A + + K +K + +F+ T P + +++
Sbjct: 140 -GMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQE 198
Query: 302 DGYDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPDEC 358
+G D ++L+T+ GA P + V ++G+TE + GV EC
Sbjct: 199 EGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGPGVAF-----EC 252
Query: 359 RRWGSTGRLSAGLE-------AKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTS 411
+ G+ +I+DPETG+ +P G+ GEL V +T
Sbjct: 253 QE-------QNGMHFWEDCYLVEIIDPETGEPVPEGEIGEL-----------V----LT- 289
Query: 412 ATLLPDGW----MRTGDLCYIDEDG---------FLFIVDRLKDLIKYKGYQVAPAELEH 458
TL + RT DL I I R D+ KG + P ++E
Sbjct: 290 -TLDREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEK 348
Query: 459 LLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVA 518
+L+ E+ +I + Q M V S + +E + R + ++++
Sbjct: 349 ILVQFPELGSNYLI-TLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDII--RQLKDEI 405
Query: 519 FINA---------IPKSAAGKILRME-LRK 538
+ +P+S GK +R++ LR
Sbjct: 406 LVTPKVKLVKKGSLPQS-EGKAVRVKDLRD 434
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 90/601 (14%), Positives = 180/601 (29%), Gaps = 149/601 (24%)
Query: 9 FDTKSGFNSATKTFHSLRPPI--DLPPEDAPISAVDYVSSLRATLPWRD-DDTVALINSV 65
F+T + +D D ++ L + D + ++V
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQ----DM---PKSILSKEEIDHIIMSKDAV 61
Query: 66 TGLRVSFSEF-TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISP 124
+G F +++ + +++ V R+ + F++S E P
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQ-------------RQP 105
Query: 125 ANPVNTESEISRQIQLSNPVIAFATSSV--VHKLAKLKHRTILIDSPE----FDSMTMSW 178
+ + T I ++ +L N FA +V + KL+ + +L P D + S
Sbjct: 106 S--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGS- 161
Query: 179 NSKHELDRAKVCQS-DVAAIMY------SSGTTGRVKGVMLTHRNLTAAVASSFASSPKR 231
K + VC S V M + + V+ + L + ++ S
Sbjct: 162 -GKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 232 VSPAVMLFTMPYFHIYGLFFCFR-AAALM-----ETAVVMQRFDL--KMML----KAVEE 279
S + + L L+ + A F+L K++L K V +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 280 FRVTHAAVTPPIVVAMSKGGSTD----------GYDLSSLETVACGAAPLGKDTIMAFAS 329
F ++ A T + S + D L P I
Sbjct: 280 F-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 330 KFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG-- 387
+T ++ V D +L+ +E+ + + L P
Sbjct: 339 DGL------------ATWDNWKHVNCD---------KLTTIIESSL------NVLEPAEY 371
Query: 388 KE--GELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRL--KDL 443
++ LS+ P + + + W D+ D +V++L L
Sbjct: 372 RKMFDRLSV----FPPS-AHIPTILLSLI----W---FDVIKSDVM---VVVNKLHKYSL 416
Query: 444 IK----------YKGYQVAPAELEHLLLSHREVADAAVIP--YPDEEAGQMPM-----AF 486
++ Y +LE+ HR + D IP + ++ + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 487 VVRQPHSSLNEAEIMEFVA--RQVSPY-------KKIRRVAFINAIPKSAAGKILRMELR 537
+ H L E E + R V + +KIR + S + +++
Sbjct: 477 IGH--H--LKNIEHPERMTLFRMV--FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 538 K 538
K
Sbjct: 531 K 531
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.6 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.58 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 99.08 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 99.05 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.93 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.72 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 90.72 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 88.9 |
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-85 Score=685.11 Aligned_cols=514 Identities=37% Similarity=0.598 Sum_probs=454.5
Q ss_pred CceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEE
Q 008895 19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98 (549)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V 98 (549)
..+|++..++.++|. .+|+.++|.++++++ |+++|+++..+++++||+||.++++++|++|++ .|+++||+|
T Consensus 6 ~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V 77 (536)
T 3ni2_A 6 EFIFRSKLPDIYIPK---NLPLHSYVLENLSNH----SSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVI 77 (536)
T ss_dssp CCCBCCSSCCCCCCS---SCCHHHHHTTTGGGS----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred ceEEecCCCCCCCCC---CCcHHHHHHHHhhcC----CCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence 467778777777774 379999999999999 999999997667899999999999999999999 999999999
Q ss_pred EEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----CCCeEEEecCC-----
Q 008895 99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDSP----- 169 (549)
Q Consensus 99 ~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~----- 169 (549)
+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+.. ....++.++..
T Consensus 78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (536)
T 3ni2_A 78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCL 157 (536)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCE
T ss_pred EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999876655432 24455555432
Q ss_pred chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC---CCCCCCcEEEEecChhhH
Q 008895 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PKRVSPAVMLFTMPYFHI 246 (549)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~~pl~~~ 246 (549)
.+.++...... ........++++++++|||||||.||+|+++|+++.+.+....... ....+.+++++.+|++|.
T Consensus 158 ~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 235 (536)
T 3ni2_A 158 HFSELTQADEN--EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI 235 (536)
T ss_dssp ETHHHHTSCGG--GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSH
T ss_pred CHHHHhhcccc--ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHH
Confidence 12333221111 1222345678999999999999999999999999998877654422 146778999999999999
Q ss_pred HHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHH
Q 008895 247 YGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325 (549)
Q Consensus 247 ~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~ 325 (549)
+++ ...+.++..|+++++.+.+++..+++.++++++|+++++|+++..+++.......+++++|.+++|||++++++.+
T Consensus 236 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 315 (536)
T 3ni2_A 236 YALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELED 315 (536)
T ss_dssp HHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHH
Confidence 998 5578889999999999999999999999999999999999999999998776677899999999999999999999
Q ss_pred HHHHhCCCCcEEcccCccccccceeccc---CcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccc
Q 008895 326 AFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402 (549)
Q Consensus 326 ~~~~~~~~~~l~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~g 402 (549)
++++.++++.+++.||+||++.+++.+. ........+++|+|+++++++|+|++++++++.|+.|||+|+|++++.|
T Consensus 316 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~G 395 (536)
T 3ni2_A 316 TVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG 395 (536)
T ss_dssp HHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSE
T ss_pred HHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchh
Confidence 9999999999999999999997765432 1223345689999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCce
Q 008895 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQM 482 (549)
Q Consensus 403 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~ 482 (549)
|+++|+.+...|..+|||+|||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..++.
T Consensus 396 Y~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~ 475 (536)
T 3ni2_A 396 YLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEV 475 (536)
T ss_dssp ETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred hcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCce
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 483 PMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 483 ~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++++|+..++...+.++|+++++++|+.|++|+.++++++||+|++|||+|++|++++..
T Consensus 476 ~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 476 PVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 999999988878899999999999999999999999999999999999999999998853
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-82 Score=663.18 Aligned_cols=511 Identities=32% Similarity=0.499 Sum_probs=442.9
Q ss_pred CceeccCCCCCCCCCCCCCCCHHH-HHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCE
Q 008895 19 TKTFHSLRPPIDLPPEDAPISAVD-YVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDT 97 (549)
Q Consensus 19 ~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~ 97 (549)
.|+|++..+....|. ..|+.+ ++.++++++ +++|+++...++++||+||.++++++|+.|++ .|+++||+
T Consensus 9 ~~~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~-----~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~ 79 (548)
T 2d1s_A 9 NIVVGPKPFYPIEEG---SAGTQLRKYMERYAKL-----GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVDGR 79 (548)
T ss_dssp TSEECCCCSSCCCSS---CHHHHHHHHHHHHHHH-----TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCE
T ss_pred ceEecCCCCCCCCCC---cCcHHHHHHHhhhccc-----CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCE
Confidence 467888776666654 258888 788777644 68999985447899999999999999999998 89999999
Q ss_pred EEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----C--CCeEEEecCC--
Q 008895 98 AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L--KHRTILIDSP-- 169 (549)
Q Consensus 98 V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~--~~~~~~~~~~-- 169 (549)
|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+.. . ...++.++..
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 9999999999999999999999999999999999999999999999999999887665432 1 2344444432
Q ss_pred -----chhhhhcccCCCccccccccC-----C-CCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCCcE
Q 008895 170 -----EFDSMTMSWNSKHELDRAKVC-----Q-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAV 236 (549)
Q Consensus 170 -----~~~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~ 236 (549)
.+.++....... ........ + +++++++|||||||.||+|.++|+++.+......... ....++++
T Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~ 238 (548)
T 2d1s_A 160 YRGYQCLDTFIKRNTPP-GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTA 238 (548)
T ss_dssp BTTBCBHHHHHHHTSCT-TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred ccccccHHHHHhcCccc-cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccce
Confidence 234433221110 01111122 3 8899999999999999999999999998887776652 24677899
Q ss_pred EEEecChhhHHHHHH-HHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEe
Q 008895 237 MLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315 (549)
Q Consensus 237 ~~~~~pl~~~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~ 315 (549)
+++.+|++|.+++.. ++.++ .|+++++.+.+++..+++.|+++++|+++++|+++..|.+.......+++++|.+++|
T Consensus 239 ~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 317 (548)
T 2d1s_A 239 VLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASG 317 (548)
T ss_dssp EEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEEC
T ss_pred EEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEc
Confidence 999999999999865 45666 9999999988999999999999999999999999999998766555678999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEe
Q 008895 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395 (549)
Q Consensus 316 Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (549)
|+++++++.+++.+.++++.+++.||+||++..++... ......+++|+|+++++++|+|++++++++.|+.|||+|+
T Consensus 318 G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~ 395 (548)
T 2d1s_A 318 GAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP--EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395 (548)
T ss_dssp SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC--TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred CccCCHHHHHHHHHHcCCCceeeccccccccceeeecC--cccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEEC
Confidence 99999999999999998889999999999987766532 2234568999999999999999889999999999999999
Q ss_pred cCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeec
Q 008895 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475 (549)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~ 475 (549)
|++++.||+++|+.|.+.|..+|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.+
T Consensus 396 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~ 475 (548)
T 2d1s_A 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVP 475 (548)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred CHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEE
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCccc-EEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 476 DEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR-RVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 476 ~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~-~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++..++.++++|+++++...+.++|+++++++|+.|++|+ .|+++++||+|++||++|++|++++.+
T Consensus 476 ~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 476 DPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp ETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred cCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 8888899999999887767789999999999999999999 999999999999999999999998764
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-82 Score=669.33 Aligned_cols=511 Identities=30% Similarity=0.460 Sum_probs=401.8
Q ss_pred eccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCC------ceecHHHHHHHHHHHHHHhHHhcCCCCC
Q 008895 22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG------LRVSFSEFTRRTNSLASYLQNVTRLSKN 95 (549)
Q Consensus 22 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~a~~~A~~L~~~~g~~~g 95 (549)
|.+..++.++|. .|+.++|.++++++ |+++|+++.... +++||+||.++++++|++|++ .|+++|
T Consensus 7 ~~~~~p~~~~~~----~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~g 77 (549)
T 3g7s_A 7 YKIGFPSLYYPK----ISLADRIDAAAEKF----GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKG 77 (549)
T ss_dssp SCCCCCCCCCCC----CCTTHHHHHHHHHH----TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTT
T ss_pred eccCCCCCCcCC----CCHHHHHHHHHHhC----CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCC
Confidence 334444455555 89999999999999 999999987311 899999999999999999999 899999
Q ss_pred CEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----CCCe-EEEec--C
Q 008895 96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILID--S 168 (549)
Q Consensus 96 ~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~-~~~~~--~ 168 (549)
|+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+.. .... ++..+ .
T Consensus 78 d~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (549)
T 3g7s_A 78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEV 157 (549)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999887665542 2333 33332 2
Q ss_pred CchhhhhcccCCCccccccccC-CCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHH
Q 008895 169 PEFDSMTMSWNSKHELDRAKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247 (549)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 247 (549)
..+.+........ ....... ++++++|+|||||||.||+|+++|+++.+........+ ...+.++++..+|++|.+
T Consensus 158 ~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~ 234 (549)
T 3g7s_A 158 NSLSEVMDSGSED--FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVGCMPMFHSA 234 (549)
T ss_dssp SCHHHHHHHSCSC--CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEECCSCTTSHH
T ss_pred cCHHHHHhcCccc--cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEEEeCcHHHHH
Confidence 2344443322211 1112223 38999999999999999999999999999888777666 467889999999999999
Q ss_pred HHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCC--CCCCCceEEEEecCCCCHHHHH
Q 008895 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIM 325 (549)
Q Consensus 248 g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~--~~l~~lr~v~~~Ge~l~~~~~~ 325 (549)
++...+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++...... .+++++|.+++||+++++++.+
T Consensus 235 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~ 314 (549)
T 3g7s_A 235 EFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVE 314 (549)
T ss_dssp HHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHH
Confidence 99778889999999999999999999999999999999999999999987643332 5689999999999999999999
Q ss_pred HHHHh----CC--CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCc
Q 008895 326 AFASK----FP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399 (549)
Q Consensus 326 ~~~~~----~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~ 399 (549)
++.+. ++ ++.+++.||+||++.++..... ......+++|+|+++++++|+|++++++++.|+.|||+|+|+++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v 393 (549)
T 3g7s_A 315 KLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP-LRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNI 393 (549)
T ss_dssp HHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG-GGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTS
T ss_pred HHHHHHHhhcCCccccccceEeccccchhhhcCCc-cccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcch
Confidence 99988 52 3899999999999987665432 22245678999999999999998999999999999999999999
Q ss_pred ccccCCCccccccccC--CCC--eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeec
Q 008895 400 MKGYVGEPEVTSATLL--PDG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYP 475 (549)
Q Consensus 400 ~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~ 475 (549)
+.||+++++.+...|. .+| ||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.+||+|.+++|++.+
T Consensus 394 ~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 473 (549)
T 3g7s_A 394 FKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKP 473 (549)
T ss_dssp CSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCC
T ss_pred hhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeE
Confidence 9999999999999884 567 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCC--CCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 476 DEEAGQMPMAFVVRQPH--SSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 476 ~~~~~~~~~~~v~~~~~--~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
++..++.++++|+++++ ...+.++|+++|+++|+.|++|+.|+++++||+|++|||+|++|++++.+...
T Consensus 474 ~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 545 (549)
T 3g7s_A 474 DEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHH 545 (549)
T ss_dssp C------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC---------------------
T ss_pred ccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccc
Confidence 98889999999998876 56788999999999999999999999999999999999999999999877653
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-82 Score=658.20 Aligned_cols=490 Identities=27% Similarity=0.419 Sum_probs=425.8
Q ss_pred HHHhhcccCCCCCCCCCcEEEE-CCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHcCC
Q 008895 42 DYVSSLRATLPWRDDDTVALIN-SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120 (549)
Q Consensus 42 ~~~~~~~~~~~~~~p~~~a~~~-~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~G~ 120 (549)
+++.+.++++ |++.|+.. ...++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~----p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKL----DDPHKLAIETAAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCC----SCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhC----CCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 3566777778 77776652 1236899999999999999999999 8999999999999999999999999999999
Q ss_pred eEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHh----cCCCeEEEecCCchhhhhcc-cCCCccccccccCCCCEE
Q 008895 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMS-WNSKHELDRAKVCQSDVA 195 (549)
Q Consensus 121 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a 195 (549)
+++|++|.++.+++.+++++++++++|++....+.+. .....+..++......+... .............+++++
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a 158 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLA 158 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEE
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeE
Confidence 9999999999999999999999999999976543322 22334444432221111100 000111222345678999
Q ss_pred EEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHH
Q 008895 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMML 274 (549)
Q Consensus 196 ~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~ 274 (549)
+++|||||||.||+|+++|+++.+........+ ...++++++..+|++|.+|+ ...+.++..|+++++.+.+++..++
T Consensus 159 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~ 237 (503)
T 4fuq_A 159 AILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL 237 (503)
T ss_dssp EEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHH
T ss_pred EEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHH
Confidence 999999999999999999999999988877777 57889999999999999997 4567888999999999999999999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.++ ++|+++++|+++..+++........++++|.+++||+++++++.+.|.+.+ ++.+++.||+||++..... .
T Consensus 238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~ 312 (503)
T 4fuq_A 238 DLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--P 312 (503)
T ss_dssp HHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--C
T ss_pred HHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--C
Confidence 9998 899999999999999998877777789999999999999999999999998 7899999999999876443 2
Q ss_pred cCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecCCeE
Q 008895 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFL 434 (549)
Q Consensus 355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~ 434 (549)
.......+++|+|+++++++|+|++++++++.|+.|||+|+|++++.||+++|+.+...|..+|||+|||+|++|++|++
T Consensus 313 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 392 (503)
T 4fuq_A 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYV 392 (503)
T ss_dssp SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEE
T ss_pred CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcE
Confidence 23344568899999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred EEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcc
Q 008895 435 FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKI 514 (549)
Q Consensus 435 ~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p 514 (549)
++.||+||+||++|++|+|.|||++|.+||+|.+++|+++++...++.++++|+.+++...+.++++++++++|+.|++|
T Consensus 393 ~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P 472 (503)
T 4fuq_A 393 HILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMP 472 (503)
T ss_dssp EECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCC
T ss_pred EEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 99999999999999999999999999999999999999999988899999999998888889999999999999999999
Q ss_pred cEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 515 RRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 515 ~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+.|+++++||+|++|||+|++|++++.+
T Consensus 473 ~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 473 KKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp SEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred CEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 9999999999999999999999999865
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-83 Score=671.83 Aligned_cols=516 Identities=32% Similarity=0.532 Sum_probs=345.1
Q ss_pred CCceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEE---ECCCCceecHHHHHHHHHHHHHHhHHhcCCCC
Q 008895 18 ATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSK 94 (549)
Q Consensus 18 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~---~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~ 94 (549)
...+++++.+..++|. .|+.++|.++++++ |+++|++ +...++++||+||.++++++|++|++ .|+++
T Consensus 4 ~~~~~~~~~~~~~~~~----~tl~~~l~~~a~~~----p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~ 74 (550)
T 3rix_A 4 AKNIKKGPAPFYPLED----GTAGEQLHKAMKRY----ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNT 74 (550)
T ss_dssp GGGSEECCCCSSCCCC----SCHHHHHHHHHHHH----HTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCT
T ss_pred ccceeeCCCCCCCccc----CCHHHHHHHHHHhC----CCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCC
Confidence 3557778887777776 89999999999999 8888765 65557899999999999999999999 89999
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC------CCeEEEecC
Q 008895 95 NDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDS 168 (549)
Q Consensus 95 g~~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~ 168 (549)
||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+... ...++.++.
T Consensus 75 gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (550)
T 3rix_A 75 NHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDS 154 (550)
T ss_dssp TCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTC
T ss_pred CCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999998876654321 123333332
Q ss_pred C-------chhhhhcccCCC----cc-ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCC
Q 008895 169 P-------EFDSMTMSWNSK----HE-LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSP 234 (549)
Q Consensus 169 ~-------~~~~~~~~~~~~----~~-~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~ 234 (549)
. .+.++....... .. .......++++++++|||||||.||+|+++|+++........... ....++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~ 234 (550)
T 3rix_A 155 KTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPD 234 (550)
T ss_dssp SSCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTT
T ss_pred CccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCC
Confidence 1 122222111100 00 111122357899999999999999999999999998887766553 246778
Q ss_pred cEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEE
Q 008895 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC 314 (549)
Q Consensus 235 ~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~ 314 (549)
+++++.+|++|.++++..+.++..|+++++...+++..+++.|+++++|+++++|+++..+++.......+++++|.+++
T Consensus 235 ~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~ 314 (550)
T 3rix_A 235 TAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314 (550)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEE
T ss_pred cEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEE
Confidence 99999999999999988889999999999999999999999999999999999999999999987766777999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEE
Q 008895 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI 394 (549)
Q Consensus 315 ~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v 394 (549)
||+++++++.+++.+.++...+++.||+||++..++... ......+++|+|+++++++|+|++++++++.|+.|||+|
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v 392 (550)
T 3rix_A 315 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP--EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCV 392 (550)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC--TTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEE
T ss_pred ecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCC--CCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEE
Confidence 999999999999999995556899999999998776543 233466899999999999999988999999999999999
Q ss_pred ecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEee
Q 008895 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474 (549)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~ 474 (549)
+|++++.||+++++.+...|..+|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.
T Consensus 393 ~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~ 472 (550)
T 3rix_A 393 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGL 472 (550)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------------------
T ss_pred eCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCccc-EEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR-RVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 475 ~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~-~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+++..++.++++|+.+++...+.++++++++++++.++.|. .|+++++||+|++|||+|++|++++.+..
T Consensus 473 ~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 473 PDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 99888999999999887777788999999999999987665 79999999999999999999999997654
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-81 Score=656.01 Aligned_cols=493 Identities=27% Similarity=0.398 Sum_probs=429.8
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
..|+.++|.++++++ |+++|+++...+.++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 15 ~~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 15 MKNIGWMLRQRATVS----PRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp GGCHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhC----CCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 379999999999999 999999988434599999999999999999999 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----C--CeEEEe-cCCchhhhhcccCCCcccccccc
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K--HRTILI-DSPEFDSMTMSWNSKHELDRAKV 189 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 189 (549)
++|++++|++|.++.+++.+++++++++++|++......+... . ..++.+ ....+.+....... .......
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 167 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA--DEPAVEC 167 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCC--CCCCCCC
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCc--CCCCCCC
Confidence 9999999999999999999999999999999998776654321 0 011111 11122222221111 1223345
Q ss_pred CCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcC
Q 008895 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD 269 (549)
Q Consensus 190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~ 269 (549)
.++++++++|||||||.||+|+++|+++.+........+ ....++++++.+|++|.+++...+.++..|+++++.+.++
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~ 246 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFD 246 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCC
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCC
Confidence 678999999999999999999999999999988877777 5788899999999999999977666666999999999999
Q ss_pred HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccce
Q 008895 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349 (549)
Q Consensus 270 ~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~ 349 (549)
+..+++.+.++++|+++++|+++..+.+.......+++++|.+++||+++++++.+.+.+. ++++++.||+||++..+
T Consensus 247 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~ 324 (517)
T 3r44_A 247 ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGG 324 (517)
T ss_dssp HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCE
T ss_pred HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccce
Confidence 9999999999999999999999999988765555678899999999999999999999987 88999999999998877
Q ss_pred ecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEe
Q 008895 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (549)
Q Consensus 350 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~ 429 (549)
............+++|+|.++++++|+| +++.+++.| .|||+|+|++++.||+++|+.+...| .+|||+|||+|+++
T Consensus 325 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~ 401 (517)
T 3r44_A 325 TLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEID 401 (517)
T ss_dssp EEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEEC
T ss_pred eecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEc
Confidence 6554444455678999999999999999 678888888 89999999999999999999999999 68999999999999
Q ss_pred cCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCC
Q 008895 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVS 509 (549)
Q Consensus 430 ~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~ 509 (549)
+||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++ ..++...+.++|+++++++|+
T Consensus 402 ~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~~~L~ 480 (517)
T 3r44_A 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGTRLA 480 (517)
T ss_dssp TTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHHHHSC
T ss_pred CCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999988888888888 455566789999999999999
Q ss_pred CCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 510 PYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 510 ~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
.|++|+.|+++++||+|++|||+|++|++++.+.
T Consensus 481 ~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 481 RYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp GGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred CCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 9999999999999999999999999999998764
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-81 Score=657.31 Aligned_cols=491 Identities=25% Similarity=0.366 Sum_probs=425.0
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 25 ~tl~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 25 ETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp CCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC----CCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 69999999999999 999999987 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH--------HHHh-cC-CCe-EEEecC-CchhhhhcccCCCcccc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA-KL-KHR-TILIDS-PEFDSMTMSWNSKHELD 185 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~-~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 185 (549)
+|++++|++|.++.+++.+++++++++++|+++... ..+. .. ... ++..+. ..+.++..... . ...
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 175 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHT-E-PVK 175 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCC-C-CCC
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhccc-c-ccc
Confidence 999999999999999999999999999999987531 1111 11 122 222222 12222221111 0 111
Q ss_pred ccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH--HHHHHhhhccEEE
Q 008895 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMETAV 263 (549)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~g~~~~ 263 (549)
.....++++++++|||||||.||||+++|+++.+.+......+ ...+++++++.+|++|.+++. .++.++..|++++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 2335678999999999999999999999999998887766665 467889999999999999985 5889999999999
Q ss_pred EecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcc
Q 008895 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (549)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~t 343 (549)
+.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+++++++.+++.+.+ ++.+++.||+|
T Consensus 255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T 333 (539)
T 1mdb_A 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMA 333 (539)
T ss_dssp ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECT
T ss_pred ECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCC
Confidence 99989999999999999999999999999999876544556789999999999999999999999998 78999999999
Q ss_pred ccccceecccCcCCCCCCCccccccCC-cEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeec
Q 008895 344 ESTAGVFRTVGPDECRRWGSTGRLSAG-LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (549)
Q Consensus 344 E~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 422 (549)
|++..... .........+++|+|+++ .+++|+| +++++++.|+.|||+|+|++++.||+++++.|...|..+|||+|
T Consensus 334 E~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~T 411 (539)
T 1mdb_A 334 EGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRT 411 (539)
T ss_dssp TSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEE
T ss_pred CCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeec
Confidence 96543322 111111234689999976 4899999 67899999999999999999999999999999999988999999
Q ss_pred CceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 008895 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIME 502 (549)
Q Consensus 423 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~ 502 (549)
||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++|+.++ ...+.+++++
T Consensus 412 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~ 490 (539)
T 1mdb_A 412 GDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELKA 490 (539)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHHH
T ss_pred CceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888899999999874 4568899999
Q ss_pred HHHhc-CCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 503 FVARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 503 ~l~~~-l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+++++ |+.|++|+.|+++++||+|++|||+|++|++++.+
T Consensus 491 ~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 491 FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 99998 99999999999999999999999999999998754
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-80 Score=644.89 Aligned_cols=486 Identities=24% Similarity=0.338 Sum_probs=420.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.++|.++++++ |+++|+++...++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 2 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 76 (504)
T 1t5h_X 2 QTVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHR 76 (504)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhC----CCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 47899999999999 999999986556899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEE--cCccHHHH-hcC-CCeEEEecCCchhhhhcccC---CCccccccccC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFA--TSSVVHKL-AKL-KHRTILIDSPEFDSMTMSWN---SKHELDRAKVC 190 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 190 (549)
+|++++|++|.++.+++.+++++++++++++ +....+.+ ... ...++. +.++..... ...........
T Consensus 77 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 151 (504)
T 1t5h_X 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-----LGDLVRDGEPYSYGPPIEDPQRE 151 (504)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE-----GGGTEETTEECCCSCCCCCCCCC
T ss_pred hCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE-----ecchhhcCcccccCCccCCCCCC
Confidence 9999999999999999999999999999999 77665554 322 223222 222222110 00011113346
Q ss_pred CCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCC--CCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecC
Q 008895 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR 267 (549)
Q Consensus 191 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~ 267 (549)
++++++++|||||||.||+|.++|+++.+........+ +. .+.+++++.+|++|.+++ ...+.++..|+++++.+.
T Consensus 152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 230 (504)
T 1t5h_X 152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE 230 (504)
T ss_dssp TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC
Confidence 78999999999999999999999999998887776665 34 678999999999999998 667889999999999999
Q ss_pred cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcccc
Q 008895 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345 (549)
Q Consensus 268 ~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~ 345 (549)
+++..+++.|+++++|+++++|+++..|++... .....++++|.+++||+++++++.+++.+.+ +..+++.||+||+
T Consensus 231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~ 309 (504)
T 1t5h_X 231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEA 309 (504)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccc
Confidence 999999999999999999999999999987642 2345689999999999999999999999999 6889999999999
Q ss_pred ccceecccCcCCCCCCCccccccCCcEEEEEcCCCC--CcCCCCCcceEEEe-cCCcccccCCCccccccccCCCCeeec
Q 008895 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG--DSLPPGKEGELSIR-GPTIMKGYVGEPEVTSATLLPDGWMRT 422 (549)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~Gel~v~-g~~~~~gy~~~~~~~~~~~~~~~~~~T 422 (549)
+. .... . ....+++|.|.++++++|+|++.+ ++++.|+.|||+|+ |+.++.||+++|+.+.+.| .+|||+|
T Consensus 310 ~~-~~~~-~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~T 383 (504)
T 1t5h_X 310 MN-SLYM-R---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRT 383 (504)
T ss_dssp EE-EEEE-E---SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEE
T ss_pred cc-cccc-c---CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCcccc
Confidence 32 2221 1 235578999999999999994432 89999999999999 9999999999999999999 6899999
Q ss_pred CceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHH
Q 008895 423 GDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIME 502 (549)
Q Consensus 423 GD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~ 502 (549)
||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+++++...+.+++++
T Consensus 384 GDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~ 463 (504)
T 1t5h_X 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDT 463 (504)
T ss_dssp EEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHH
T ss_pred CcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999998777778999999
Q ss_pred HHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 503 FVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 503 ~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
++++ +|+.|++|+.|+++++||+|++|||+|++|++++.
T Consensus 464 ~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 464 FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp HHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred HHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9998 99999999999999999999999999999999874
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-80 Score=646.93 Aligned_cols=495 Identities=21% Similarity=0.304 Sum_probs=426.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|+.+.|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~ 73 (512)
T 3fce_A 1 MKLLEQIEKWAAET----PDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVK 73 (512)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|++|.++.+++.+++++++++++|++...... ......+ ....+...................+++++++
T Consensus 74 ~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 149 (512)
T 3fce_A 74 AGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT--DLPVRIV--SEDNLKDIFFTHKGNTPNPEHAVKGDENFYI 149 (512)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--CCSSEEE--ETHHHHHHHHHTTTCCCCGGGSCCTTSEEEE
T ss_pred hCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc--cccccee--chhhhhhhcccccccCCCccccCCCCCeEEE
Confidence 99999999999999999999999999999998543211 1112222 2222222221111111122334567899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~~~ 274 (549)
+|||||||.||+|+++|+++.+........+ ...+++++++.+|++|.+++...+.++..|+++++.+. +++..++
T Consensus 150 ~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 228 (512)
T 3fce_A 150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLF 228 (512)
T ss_dssp EEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHH
Confidence 9999999999999999999999888877777 57888999999999999999889999999999999876 7899999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.++++++|+++++|+++..++.........++++|.+++||+++++++.+++.+.++++.+++.||+||++..+.....
T Consensus 229 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 308 (512)
T 3fce_A 229 ASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHV 308 (512)
T ss_dssp HHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEe
Confidence 99999999999999999999988877677778999999999999999999999999999999999999999877654322
Q ss_pred cC---CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccC---CCCeeecCceEEE
Q 008895 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL---PDGWMRTGDLCYI 428 (549)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---~~~~~~TGD~~~~ 428 (549)
.. ......++|+|.++++++|+| +++++++.|+.|||+|+|++++.||+++|+.+.+.|. .++||+|||+|++
T Consensus 309 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 309 TEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp CHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 11 123457899999999999999 7899999999999999999999999999999998873 4679999999999
Q ss_pred ecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH----HHHHHHH
Q 008895 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE----AEIMEFV 504 (549)
Q Consensus 429 ~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~----~~i~~~l 504 (549)
++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++++|++.+....+. +++++++
T Consensus 388 -~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l 466 (512)
T 3fce_A 388 -ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKEL 466 (512)
T ss_dssp -ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHH
T ss_pred -cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHH
Confidence 79999999999999999999999999999999999999999999998888889999999876654443 5799999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCCC
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 546 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~ 546 (549)
+++|+.|++|+.++++++||+|++|||+|++|++.+.+.+.+
T Consensus 467 ~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~ 508 (512)
T 3fce_A 467 NERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHH 508 (512)
T ss_dssp HTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC----
T ss_pred HhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccc
Confidence 999999999999999999999999999999999999877653
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-79 Score=645.33 Aligned_cols=493 Identities=22% Similarity=0.320 Sum_probs=403.8
Q ss_pred CCHH-HHHhhcccCCCCCCCCCcEEEEC---CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 38 ISAV-DYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 38 ~~~~-~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
.|+. ++|..+++++ |+++|+++. ..++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|
T Consensus 55 ~n~~~~~l~~~a~~~----pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 55 FNFAYDVVDVYARDS----PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp CCHHHHTHHHHHHHC----TTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCTHHHHHHH
T ss_pred chHHHHHHHHHHhhC----CCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 6776 8888889999 999999852 124689999999999999999998 999999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH--HHHh-------cCCCeEEEecCC------chhhhhccc
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--HKLA-------KLKHRTILIDSP------EFDSMTMSW 178 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~-------~~~~~~~~~~~~------~~~~~~~~~ 178 (549)
||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+. ......+.++.. .+.+.....
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEES 209 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHS
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhC
Confidence 9999999999999999999999999999999999987653 3222 112344545432 122222221
Q ss_pred CCCcccc--ccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH-HHHHH
Q 008895 179 NSKHELD--RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRA 255 (549)
Q Consensus 179 ~~~~~~~--~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~ 255 (549)
....... .....++++++++|||||||.||+|.++|.+++.......... ...+.++++...|+.|..+++ .++.+
T Consensus 210 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (580)
T 3etc_A 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVEDDGLHYTVADSGWGKCVWGKLYGQ 288 (580)
T ss_dssp CSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCCTTCEEEECCCTTSTHHHHHTTHHH
T ss_pred CcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCCCCceEEEeCChHHHHHHHHHHHHH
Confidence 1110111 1245678999999999999999999999999888776655444 467889999999999887775 46788
Q ss_pred hhhccEEEEe--cCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCC
Q 008895 256 AALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPK 333 (549)
Q Consensus 256 l~~g~~~~~~--~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~ 333 (549)
+..|+++++. ..+++..+++.|+++++|+++++|+++..|++. .....++++||.+++|||++++++.++|.+.+ +
T Consensus 289 l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g 366 (580)
T 3etc_A 289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-G 366 (580)
T ss_dssp HHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHH-S
T ss_pred HhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHh-C
Confidence 8899999887 468999999999999999999999999999886 33455689999999999999999999999988 7
Q ss_pred CcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEec-----CCcccccCCCcc
Q 008895 334 VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG-----PTIMKGYVGEPE 408 (549)
Q Consensus 334 ~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g-----~~~~~gy~~~~~ 408 (549)
+++++.||+||++..+.... ......+++|+|+++++++|+| +++++++.|+.|||+|+| +.++.||+++|+
T Consensus 367 ~~i~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~ 443 (580)
T 3etc_A 367 IKLMEGFGQTETVVTIATFP--WMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPE 443 (580)
T ss_dssp CCCEEEECCTTSSCCEECCT--TSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHH
T ss_pred CeEecccccccccceeecCC--CCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHh
Confidence 89999999999987665532 2345678999999999999999 669999999999999997 789999999999
Q ss_pred ccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEE
Q 008895 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488 (549)
Q Consensus 409 ~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~ 488 (549)
.+.+.| .+|||+|||+|++|+||+++++||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+
T Consensus 444 ~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv 522 (580)
T 3etc_A 444 RTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIV 522 (580)
T ss_dssp HHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEE
Confidence 999999 4899999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred eCCCCCCC---HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 489 RQPHSSLN---EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 489 ~~~~~~~~---~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
+.++...+ .++|+++++++|++|++|+.|+++++||+|++|||+|++|++++++
T Consensus 523 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 523 LTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp ECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred ECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 88775544 3689999999999999999999999999999999999999999875
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-81 Score=658.36 Aligned_cols=495 Identities=24% Similarity=0.321 Sum_probs=334.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 30 ~tl~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 102 (544)
T 3o83_A 30 QPLTRILTVGVQSH----PHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLK 102 (544)
T ss_dssp CCTTHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 79999999999999 999999998 8999999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH--------HHHhc--CCC-eEEEecCC----chhhhhcccCCCc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAK--LKH-RTILIDSP----EFDSMTMSWNSKH 182 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~--~~~-~~~~~~~~----~~~~~~~~~~~~~ 182 (549)
+|++++|+++.++.+++.+++++++++++|++.... ..+.. ... .++..+.. .+.+........
T Consensus 103 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 181 (544)
T 3o83_A 103 AGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAET- 181 (544)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSS-
T ss_pred hCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccccc-
Confidence 999999999999999999999999999999987643 12221 112 23333322 122222211111
Q ss_pred cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH--HHHHHhhhcc
Q 008895 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALME 260 (549)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~g~ 260 (549)
........++++++++|||||||.||+|+++|+++.+.+......+ +..+++++++.+|++|.+++. ..+.++..|+
T Consensus 182 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~ 260 (544)
T 3o83_A 182 FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGG 260 (544)
T ss_dssp CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTC
T ss_pred ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CCCCCCeEEEecCcceEeecchHHHHHHHHcCC
Confidence 1112345678999999999999999999999999999998887777 578899999999999999884 5788999999
Q ss_pred EEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEccc
Q 008895 261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340 (549)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~y 340 (549)
++++.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+++++++.+++.+.+ ++.+++.|
T Consensus 261 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~Y 339 (544)
T 3o83_A 261 CVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVF 339 (544)
T ss_dssp EEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeee
Confidence 99999999999999999999999999999999999887665556688999999999999999999999998 89999999
Q ss_pred CccccccceecccCcCCCCCCCcccccc-CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 008895 341 GLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (549)
Q Consensus 341 G~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 419 (549)
|+||++..+... ........+++|+|+ ++.+++|+| +++++++.|+.|||+|+|++++.||+++|+.+...|..+||
T Consensus 340 G~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 417 (544)
T 3o83_A 340 GMAEGLVNYTRL-DDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNY 417 (544)
T ss_dssp ECTTSCEEECCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCC
T ss_pred ccccccceeecC-CCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCC
Confidence 999987544332 112222346789996 899999999 88999999999999999999999999999999999988999
Q ss_pred eecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 008895 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAE 499 (549)
Q Consensus 420 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~ 499 (549)
|+|||+|++|+||++++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++|+..+ ...+.++
T Consensus 418 ~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~ 496 (544)
T 3o83_A 418 YYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVV 496 (544)
T ss_dssp EEEEEEEEECTTSCEEEEEEEC----------------------------------------------------------
T ss_pred eEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999888999999998775 4456788
Q ss_pred HHHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 500 IMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 500 i~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
+++++++ +|+.|++|+.|+++++||+|++|||+|++|++++.+.+.
T Consensus 497 l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 543 (544)
T 3o83_A 497 LRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTSTT 543 (544)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhccC
Confidence 9999998 799999999999999999999999999999999987654
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-79 Score=655.18 Aligned_cols=495 Identities=21% Similarity=0.289 Sum_probs=421.9
Q ss_pred HHHHHhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHH
Q 008895 40 AVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL 115 (549)
Q Consensus 40 ~~~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~ 115 (549)
+.++|.++++++ |+++|+++. ..++++||+||.++++++|++|++ +|+++||+|+++++|++++++++|||
T Consensus 78 ~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vva~lA~ 152 (652)
T 1pg4_A 78 AANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLAC 152 (652)
T ss_dssp HHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred HHHHHHHHhccC----CCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 566777888888 999999873 124789999999999999999999 89999999999999999999999999
Q ss_pred HHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH------------H-HhcC---C-CeEEEecCC---------
Q 008895 116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH------------K-LAKL---K-HRTILIDSP--------- 169 (549)
Q Consensus 116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------------~-~~~~---~-~~~~~~~~~--------- 169 (549)
+++|++++|+++.++.+++.+++++++++++|+++.... . +... . ..++.++..
T Consensus 153 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 232 (652)
T 1pg4_A 153 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG 232 (652)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBT
T ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCC
Confidence 999999999999999999999999999999999875421 1 1111 1 234444321
Q ss_pred ---chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHh-hccCCCCCCCcEEEEecChhh
Q 008895 170 ---EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFTMPYFH 245 (549)
Q Consensus 170 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~~~~~pl~~ 245 (549)
.|.++...... ........++++++|+|||||||.||||+++|++++...... ...+ ...++|++++.+|++|
T Consensus 233 ~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~ 309 (652)
T 1pg4_A 233 RDLWWRDLIEKASP--EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-DYHPGDIYWCTADVGW 309 (652)
T ss_dssp TEEEHHHHHTTSCS--CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTS
T ss_pred CceeHHHHHhhcCC--CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-CCCCCCEEEEccCCee
Confidence 13333222111 112233457899999999999999999999999988766433 3334 4678899999999999
Q ss_pred HHHH-HHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEecCC
Q 008895 246 IYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAP 318 (549)
Q Consensus 246 ~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~Ge~ 318 (549)
.+|+ +.++.++..|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++||.+++|||+
T Consensus 310 ~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp HHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred eechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 9998 678899999999999864 588999999999999999999999999988654 344568999999999999
Q ss_pred CCHHHHHHHHHhCC--CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEec
Q 008895 319 LGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396 (549)
Q Consensus 319 l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g 396 (549)
+++++++++.+.++ ++.+++.||+||++..++...........+++|+|++|++++|+| +++++++.|+.|||+|+|
T Consensus 390 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g 468 (652)
T 1pg4_A 390 INPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITD 468 (652)
T ss_dssp CCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECS
T ss_pred CCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEcc
Confidence 99999999999983 289999999999987665533222334668999999999999999 678999999999999999
Q ss_pred --CCcccccCCCccccccccCC--CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEE
Q 008895 397 --PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVI 472 (549)
Q Consensus 397 --~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv 472 (549)
|+++.|||++++.+...+.. +|||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.+||+|.+|+|+
T Consensus 469 ~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv 548 (652)
T 1pg4_A 469 SWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548 (652)
T ss_dssp CCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEE
T ss_pred CCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 79999999999988777643 78999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceeEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 473 PYPDEEAGQMPMAFVVRQPHSSLN---EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 473 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
+.+++..++.+++||+++++...+ .++|+++|+++|++|++|+.|+++++||+|++|||+|++|++++...
T Consensus 549 g~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp EEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 999888889999999998765544 47899999999999999999999999999999999999999998764
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-79 Score=635.75 Aligned_cols=492 Identities=21% Similarity=0.294 Sum_probs=428.0
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|+.+.|.++++++ |+++|+++. ++++||+||.++++++|++|++..|.++|++|+++++|++++++++|||++
T Consensus 1 m~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~ 74 (511)
T 3e7w_A 1 MKLLHAIQTHAETY----PQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVK 74 (511)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 58999999999999 999999997 899999999999999999998745888999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|+++.++.+++.+++++++++++|++..............+ .+.++....... ........+++++++
T Consensus 75 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~a~i 148 (511)
T 3e7w_A 75 AGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV-----SAEELLENEGGS-VSQDQWVKEHETFYI 148 (511)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEE-----EHHHHHTSCSCC-CCGGGSCCTTSEEEE
T ss_pred hCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccccccee-----cHhhhhccccCC-ccccccCCCCCeEEE
Confidence 99999999999999999999999999999997654221111111121 122222221111 122234567899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML 274 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~~~ 274 (549)
+|||||||.||+|+++|+++.+........+ ....++++++.+|++|.+++...+.++..|+++++.+. +++..++
T Consensus 149 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 227 (511)
T 3e7w_A 149 IYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLF 227 (511)
T ss_dssp EEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred EECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence 9999999999999999999999888877777 46788999999999999999888999999999999875 6899999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.++++++|+++++|+++..++.........++++|.+++||+++++++.+++.+.++++.+++.||+||++..+.....
T Consensus 228 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 307 (511)
T 3e7w_A 228 EELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI 307 (511)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEE
T ss_pred HHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEec
Confidence 99999999999999999999998877667778999999999999999999999999999999999999999877654322
Q ss_pred cC---CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC-CC--eeecCceEEE
Q 008895 355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP-DG--WMRTGDLCYI 428 (549)
Q Consensus 355 ~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~-~~--~~~TGD~~~~ 428 (549)
.. ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.+...|.. +| ||+|||+|++
T Consensus 308 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~ 386 (511)
T 3e7w_A 308 TNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386 (511)
T ss_dssp CHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE
T ss_pred cccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc
Confidence 11 223456799999999999999 66999999999999999999999999999999998842 23 7999999999
Q ss_pred ecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH----HHHHHHH
Q 008895 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE----AEIMEFV 504 (549)
Q Consensus 429 ~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~----~~i~~~l 504 (549)
+||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.+....+. ++|++++
T Consensus 387 -~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l 465 (511)
T 3e7w_A 387 -QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKEL 465 (511)
T ss_dssp -ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHH
T ss_pred -cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999998888899999999887654443 6799999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+++|+.|++|+.++++++||+|++|||+|++|++++.+..
T Consensus 466 ~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~ 505 (511)
T 3e7w_A 466 AASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRS 505 (511)
T ss_dssp HHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred HhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhc
Confidence 9999999999999999999999999999999999886543
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-80 Score=649.67 Aligned_cols=492 Identities=24% Similarity=0.382 Sum_probs=385.3
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEEC--CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~--~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la 114 (549)
+.++.++|.++++++ |+++|++.. ..++++||+||.++++++|++|++ .|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 369999999999999 999999852 125799999999999999999998 9999999999999999999999999
Q ss_pred HHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CC-eEEEecCC------chhhhhcccCCCc
Q 008895 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------EFDSMTMSWNSKH 182 (549)
Q Consensus 115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~~~~~~~~ 182 (549)
|+++|++++|++|.++.+++.+++++++++++|++......+... .. .++.++.. .+.+......
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA--- 168 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC---
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC---
Confidence 999999999999999999999999999999999998876554321 12 23333322 1222221111
Q ss_pred cccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhh--ccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhcc
Q 008895 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF--ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (549)
Q Consensus 183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~--~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~ 260 (549)
......++++++++|||||||.||+|+++|+++........ ..+ ...+.|++++.+|++|.+++...+.++..|+
T Consensus 169 --~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~ 245 (541)
T 1v25_A 169 --DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 245 (541)
T ss_dssp --CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCEEEECSCTTSHHHHTHHHHHHHHTC
T ss_pred --CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCEEEEeccchhhhHHHHHHHHHhcCc
Confidence 11234568999999999999999999999999987766532 223 4678899999999999999977788999999
Q ss_pred EEEEecC-cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 261 TAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 261 ~~~~~~~-~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
++++.+. +++..+++.|+++++|+++++|+++..|++.......+++++|.+++||+++++++.+++ +.+ ++++++.
T Consensus 246 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~ 323 (541)
T 1v25_A 246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQG 323 (541)
T ss_dssp EEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeec
Confidence 9999864 799999999999999999999999999987654444568999999999999999999999 666 8999999
Q ss_pred cCccccccceecccCcCC---------CCCCCccccccCCcEEEEEcCCCCCcCCC--CCcceEEEecCCcccccCCCcc
Q 008895 340 YGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGYVGEPE 408 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~ 408 (549)
||+||++.+++....... ....+++|+|+++++++|+| +++++++. ++.|||+|+|++++.||+++|+
T Consensus 324 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~ 402 (541)
T 1v25_A 324 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEE 402 (541)
T ss_dssp EECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHH
T ss_pred ccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChh
Confidence 999999887665322110 01346899999999999999 66788874 3689999999999999999999
Q ss_pred ccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEE
Q 008895 409 VTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488 (549)
Q Consensus 409 ~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~ 488 (549)
.|...|..+|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+
T Consensus 403 ~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv 482 (541)
T 1v25_A 403 ATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVV 482 (541)
T ss_dssp HHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-
T ss_pred hhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999888899999998
Q ss_pred eCCCCCCCHHHHHHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 489 RQPHSSLNEAEIMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 489 ~~~~~~~~~~~i~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
+. +...+.+++++++++ +|+.|++|+.++++++||+|++|||+|++|++++.+.
T Consensus 483 ~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 483 PR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp -------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred EC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 76 344567899999999 8999999999999999999999999999999988654
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-80 Score=691.56 Aligned_cols=520 Identities=38% Similarity=0.600 Sum_probs=358.9
Q ss_pred CCCceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCC
Q 008895 17 SATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKND 96 (549)
Q Consensus 17 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~ 96 (549)
....+|++..++.++|. ..|+.++|.++++++ |+++|+++..+++++||+||.++++++|++|++ .|+++||
T Consensus 43 ~~~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~gd 114 (979)
T 3tsy_A 43 NSDVIFRSKLPDIYIPN---HLSLHDYIFQNISEF----ATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LGVNQND 114 (979)
T ss_dssp --CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGT----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTC
T ss_pred CCCceeecCCCCCCCCC---CCCHHHHHHHHHHhC----CCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCcC
Confidence 34667888777777764 379999999999999 999999997667899999999999999999999 8999999
Q ss_pred EEEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHh----cCCCeEEEecCC---
Q 008895 97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSP--- 169 (549)
Q Consensus 97 ~V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~--- 169 (549)
+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+. .....++.++..
T Consensus 115 ~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (979)
T 3tsy_A 115 VVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESV 194 (979)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTS
T ss_pred EEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccc
Confidence 9999999999999999999999999999999999999999999999999999987654433 234445554432
Q ss_pred -------chhhhhcccCCC-ccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC---CCCCCCcEEE
Q 008895 170 -------EFDSMTMSWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS---PKRVSPAVML 238 (549)
Q Consensus 170 -------~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~~~ 238 (549)
.+.++....... .........++++++|+|||||||.||+|+++|+++++.+....... ....++++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l 274 (979)
T 3tsy_A 195 PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVIL 274 (979)
T ss_dssp CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEE
T ss_pred cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEE
Confidence 122222111100 01122345679999999999999999999999999998887655432 1467789999
Q ss_pred EecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecC
Q 008895 239 FTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAA 317 (549)
Q Consensus 239 ~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge 317 (549)
+.+|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|+++++|+++..+++.......+++++|.+++||+
T Consensus 275 ~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~ 354 (979)
T 3tsy_A 275 CVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354 (979)
T ss_dssp ECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSC
T ss_pred EECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCC
Confidence 99999999999 55678899999999999999999999999999999999999999999987767778999999999999
Q ss_pred CCCHHHHHHHHHhCCCCcEEcccCccccccceecccC---cCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEE
Q 008895 318 PLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG---PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI 394 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v 394 (549)
++++++.+++.+.+|++++++.||+||++.+++.... .......+++|+|+++++++|+|++++++++.|+.|||+|
T Consensus 355 ~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i 434 (979)
T 3tsy_A 355 PLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICI 434 (979)
T ss_dssp CCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEE
T ss_pred CCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEE
Confidence 9999999999999999999999999999977654321 2223456789999999999999998999999999999999
Q ss_pred ecCCcccccCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEee
Q 008895 395 RGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPY 474 (549)
Q Consensus 395 ~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~ 474 (549)
+|++++.||+++|+.|.+.|..+|||+|||+|+++++|+++++||+||+||++|++|+|.|||++|.++|+|.+++|++.
T Consensus 435 ~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~ 514 (979)
T 3tsy_A 435 RGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAM 514 (979)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------
T ss_pred ECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 475 PDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 475 ~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+++..++.++++|+..++...+.++++++++++|+.|++|+.++++++||+|++|||+|++|++++.++.
T Consensus 515 ~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 515 KEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 9888889999999987776778899999999999999999999999999999999999999999987654
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-80 Score=645.64 Aligned_cols=490 Identities=28% Similarity=0.397 Sum_probs=328.9
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
+.|+.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 5 ~~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 77 (509)
T 3ivr_A 5 DFTLADVYRRNAALF----PDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA 77 (509)
T ss_dssp CCCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 389999999999999 999999997 8999999999999999999998 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHh----cC-CC-eEEEecCC--chhhhhcccCCCccccccc
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KL-KH-RTILIDSP--EFDSMTMSWNSKHELDRAK 188 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 188 (549)
++|++++|++|.++.+++.+++++++++++|++......+. .. .. .++.++.. .+..+..... ........
T Consensus 78 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 156 (509)
T 3ivr_A 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS-DTPFSAPE 156 (509)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC-CSCCCCCC
T ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccC-CCCCCcCC
Confidence 99999999999999999999999999999999988766522 11 11 23333221 1222221111 11122334
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCc
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF 268 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~ 268 (549)
..++++++++|||||||.||+|.++|+++.+........+ ...++++++..+|++|.+++...+.++..|+..++...+
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~ 235 (509)
T 3ivr_A 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF 235 (509)
T ss_dssp CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEeccc
Confidence 5678999999999999999999999999999988877777 578899999999999999997777766677777776688
Q ss_pred CHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccc
Q 008895 269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348 (549)
Q Consensus 269 ~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~ 348 (549)
++..+++.|+++++|+++++|+++..+++.. ....++++|.++.+|++ ++.+.+.+.++++.+++.||+||++.+
T Consensus 236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~ 310 (509)
T 3ivr_A 236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGL 310 (509)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEE
T ss_pred CHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccc
Confidence 9999999999999999999999999998866 34457899999999987 888999999999999999999999887
Q ss_pred eecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEE
Q 008895 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYI 428 (549)
Q Consensus 349 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~ 428 (549)
+....... ...++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.+...|. +|||+|||+|++
T Consensus 311 ~~~~~~~~---~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~ 385 (509)
T 3ivr_A 311 STFAPYRD---RPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRF 385 (509)
T ss_dssp EEEEEGGG---STTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEE
T ss_pred cccCcccc---CCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEE
Confidence 66543222 234599999999999999 6699999999999999999999999999999999995 899999999999
Q ss_pred ecCCeEEEEccc--CCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh
Q 008895 429 DEDGFLFIVDRL--KDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR 506 (549)
Q Consensus 429 ~~~g~~~~~GR~--~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~ 506 (549)
+++|++++.||+ ||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++++..++...+.+++++++++
T Consensus 386 ~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~ 465 (509)
T 3ivr_A 386 DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVAS 465 (509)
T ss_dssp CTTSCEEEEEEC--------------------------------------------------------------------
T ss_pred CCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 999999999999 999999999999999999999999999999999999888899999999887777788999999999
Q ss_pred cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 507 QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 507 ~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
+|+.|++|+.|+++++||+|++|||+|++|++++.+...
T Consensus 466 ~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 466 LIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp ---------------------------------------
T ss_pred hCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence 999999999999999999999999999999999987654
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-78 Score=636.65 Aligned_cols=479 Identities=19% Similarity=0.262 Sum_probs=414.5
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 39 ~~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 39 KTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHC----CCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCC--CeEEEecCCchhhhhcccCCCccccccccCCCCEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (549)
+|++++|++|.++.+++.+++++++++++|++......+.... ..+..++...+.. ... ........+++++
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~d~a 185 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI---REG---TNLHVPSKSTDLA 185 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTT---SCC---SCCCCCCCTTSEE
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhcc---ccC---ccCCCCCCCCCeE
Confidence 9999999999999999999999999999999987766554432 2233333221110 000 1112234678999
Q ss_pred EEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHH
Q 008895 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (549)
Q Consensus 196 ~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~ 272 (549)
+++|||||||.||||+++|+++.+........+ ...++|+++..+|++|..+++..+.++..|+++++... +++..
T Consensus 186 ~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 264 (563)
T 1amu_A 186 YVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK 264 (563)
T ss_dssp EEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH
T ss_pred EEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHH
Confidence 999999999999999999999998887776666 46788999999999999998888899999999999865 68999
Q ss_pred HHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecc
Q 008895 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (549)
Q Consensus 273 ~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~ 352 (549)
+++.++++++|+++++|+++..+... .++++|.+++||+++++++.+++.+. +.+++.||+||++..+...
T Consensus 265 ~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~ 335 (563)
T 1amu_A 265 FEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTW 335 (563)
T ss_dssp HHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheee
Confidence 99999999999999999988766432 46899999999999999999998774 6899999999998766543
Q ss_pred cCcC-CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeecCce
Q 008895 353 VGPD-ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGDL 425 (549)
Q Consensus 353 ~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------~~~~~TGD~ 425 (549)
.... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|+.|.+.|.. ++||+|||+
T Consensus 336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence 3222 223557899999999999999 77899999999999999999999999999999888853 359999999
Q ss_pred EEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH
Q 008895 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVA 505 (549)
Q Consensus 426 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~ 505 (549)
|++|+||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.++...++.++++++... ..+.++|+++++
T Consensus 415 g~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~ 492 (563)
T 1amu_A 415 ARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLRQFSS 492 (563)
T ss_dssp EEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHHHHHH
T ss_pred EEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888889999998763 467899999999
Q ss_pred hcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 506 RQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 506 ~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++|+.|++|+.|+++++||+|++|||+|++|++....
T Consensus 493 ~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 529 (563)
T 1amu_A 493 EELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLT 529 (563)
T ss_dssp HHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCC
T ss_pred hhCchhhCCcEEEEecccCCCCCcChhHHhcCCcccc
Confidence 9999999999999999999999999999999998764
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-78 Score=636.22 Aligned_cols=494 Identities=21% Similarity=0.288 Sum_probs=414.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.+.|.+.++++ |+++|+.+. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 4 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQ----ADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTK 76 (521)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC----CCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999 999999998 8999999999999999999999 9999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|++|.++.+++.+++++++++++|++++....+.. ...+.+. .+........ .........+++++++
T Consensus 77 ~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~d~a~i 150 (521)
T 3l8c_A 77 SGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--ISLVSLS--EIESAKLAEM--PYERTHSVKGDDNYYI 150 (521)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--SEEEEHH--HHHHHHHHTC--CCCCSSCCCTTSEEEE
T ss_pred hCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc--Ccccchh--hhhhcccccC--CcccCCCCCCCCcEEE
Confidence 99999999999999999999999999999998865432221 1222211 1111111111 0112234567899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccC-CCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCc---CHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF---DLKMM 273 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~---~~~~~ 273 (549)
+|||||||.||+|+++|+++.+......... ......++++...|++|..++...+.++..|+++++.+.. ++..+
T Consensus 151 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~ 230 (521)
T 3l8c_A 151 IFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQL 230 (521)
T ss_dssp EECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHH
T ss_pred EEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHH
Confidence 9999999999999999999998877665542 2467788999999999999888888999999999998764 89999
Q ss_pred HHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 274 ~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
++.+.++++|++.++|+++..+..........++++|.+++||+++++++.+++.+.++++.+++.||+||++..+....
T Consensus 231 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 310 (521)
T 3l8c_A 231 FTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIE 310 (521)
T ss_dssp HHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEE
T ss_pred HHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceee
Confidence 99999999999999999999998877666677899999999999999999999999999999999999999987665432
Q ss_pred CcC---CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCcccccccc---CCCCeeecCceEE
Q 008895 354 GPD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL---LPDGWMRTGDLCY 427 (549)
Q Consensus 354 ~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~ 427 (549)
... .....+++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.+.+.| ..+|||+|||+|+
T Consensus 311 ~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~ 389 (521)
T 3l8c_A 311 ITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGS 389 (521)
T ss_dssp ECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEE
T ss_pred cccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEE
Confidence 111 123456899999999999999 779999999999999999999999999999999887 3568999999999
Q ss_pred EecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCC-CCceeEEEEEeCCCCCCC-------HHH
Q 008895 428 IDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEE-AGQMPMAFVVRQPHSSLN-------EAE 499 (549)
Q Consensus 428 ~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~-~~~~~~~~v~~~~~~~~~-------~~~ 499 (549)
+|++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|++..+.. .++.++++|+.+++...+ .++
T Consensus 390 ~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~ 469 (521)
T 3l8c_A 390 LTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKA 469 (521)
T ss_dssp ECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHH
T ss_pred EeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHH
Confidence 999999999999999999999999999999999999999999999887544 457899999988764321 578
Q ss_pred HHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCC
Q 008895 500 IMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 545 (549)
Q Consensus 500 i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 545 (549)
|+++++++|+.|++|+.|+++++||+|++|||||++|++++.+...
T Consensus 470 l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 470 IKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp HHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred HHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 9999999999999999999999999999999999999999987754
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-79 Score=648.52 Aligned_cols=483 Identities=22% Similarity=0.269 Sum_probs=325.9
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
..++.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 74 ~~~l~~~l~~~a~~~----pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 146 (570)
T 4gr5_A 74 GACVHELFEAQAARA----PDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVL 146 (570)
T ss_dssp SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHC----CCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 368999999999999 999999997 8899999999999999999999 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEE
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA 196 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 196 (549)
++|++++|++|.++.+++.+++++++++++|++......+.. ...+.+....... . ..........++++++
T Consensus 147 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~-----~-~~~~~~~~~~~~d~a~ 218 (570)
T 4gr5_A 147 KAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--TTTLYVEDEAASD-----A-PAGNLATGVGPEDVAC 218 (570)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS--SEEEECCC-------------CCCCCCCCCTTSEEE
T ss_pred HHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC--Ccceeeecccccc-----c-cccccCCCCCCCCeEE
Confidence 999999999999999999999999999999999876544322 1222222111000 0 0011223456789999
Q ss_pred EEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEec--CcCHHHHH
Q 008895 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML 274 (549)
Q Consensus 197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~--~~~~~~~~ 274 (549)
|+|||||||.||+|+++|+++.+.... .... ...++++++..+|++|..+.+.++.++..|+++++.+ .+++..++
T Consensus 219 i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 296 (570)
T 4gr5_A 219 VMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIG 296 (570)
T ss_dssp EECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHH
T ss_pred EEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHH
Confidence 999999999999999999999776654 2333 5678899999999998777778889999999999986 47899999
Q ss_pred HHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccC
Q 008895 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354 (549)
Q Consensus 275 ~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 354 (549)
+.|+++++|+++++|+++..+++... ..++++|.+++||+++++++.+++.+.++++.+++.||+||++.+......
T Consensus 297 ~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~ 373 (570)
T 4gr5_A 297 ELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373 (570)
T ss_dssp HHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred HHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeee
Confidence 99999999999999999999987543 347899999999999999999999999989999999999999876654322
Q ss_pred c--CCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCC--------CeeecCc
Q 008895 355 P--DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD--------GWMRTGD 424 (549)
Q Consensus 355 ~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~--------~~~~TGD 424 (549)
. .......++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.|.+.|..+ |||+|||
T Consensus 374 ~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGD 452 (570)
T 4gr5_A 374 VAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGD 452 (570)
T ss_dssp CGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEE
T ss_pred cccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCC
Confidence 1 1223446799999999999999 779999999999999999999999999999999988644 7999999
Q ss_pred eEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCC-CCCCHHHHHHH
Q 008895 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPH-SSLNEAEIMEF 503 (549)
Q Consensus 425 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~-~~~~~~~i~~~ 503 (549)
+|++|+||++++.||+||+||++|++|+|.|||++|.+||+|.+++|++.++...++.++++|+.++. ...+.++|+++
T Consensus 453 lg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~ 532 (570)
T 4gr5_A 453 LARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRH 532 (570)
T ss_dssp EEEECTTSCEEEEEC-----------------------------------------------------------------
T ss_pred eEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888899999987643 34677899999
Q ss_pred HHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 504 VARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 504 l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
|+++|+.|++|..++++++||+|++|||+|++|++..
T Consensus 533 l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 533 VAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp -------------------------------------
T ss_pred HHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 9999999999999999999999999999999998753
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-78 Score=646.95 Aligned_cols=497 Identities=20% Similarity=0.312 Sum_probs=417.2
Q ss_pred CHHHHHhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhH-HhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 39 SAVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~-~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
++.++|.++++++ |+++|+++. ..++++||+||.++++++|+.|+ + +|+++||+|+|+++|++++++++|
T Consensus 83 ~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 83 ACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp HHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECCCSSHHHHHHHH
T ss_pred HHHHHHHHHhccC----CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3566777888888 999999973 23578999999999999999999 7 899999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH---------HHh----cC-CC-eEEEecCC---------
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLA----KL-KH-RTILIDSP--------- 169 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~----~~-~~-~~~~~~~~--------- 169 (549)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+. .. .. .+++++..
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 237 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHA 237 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCS
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCC
Confidence 99999999999999999999999999999999999876421 111 11 11 34444321
Q ss_pred ----chhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhh-ccCCCCCCCcEEEEecChh
Q 008895 170 ----EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF-ASSPKRVSPAVMLFTMPYF 244 (549)
Q Consensus 170 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~~pl~ 244 (549)
.|.++..... .........++++++|+|||||||.||||+++|++++....... ..+ ...++|++++.+|++
T Consensus 238 ~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~ 314 (663)
T 1ry2_A 238 PRDLDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-DTHQEDVFFTAGDIG 314 (663)
T ss_dssp SSEEEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-CCCSSCEEEECSCTT
T ss_pred CccccHHHHHhhcC--CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-CCCCCcEEEEcCCcH
Confidence 1222222111 01122334678999999999999999999999999887664433 333 467889999999999
Q ss_pred hHHHH-HHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEEecC
Q 008895 245 HIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAA 317 (549)
Q Consensus 245 ~~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~~Ge 317 (549)
|.++. +.++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....++++||.+++|||
T Consensus 315 ~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 315 WITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp SHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred HhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 99998 677899999999999864 588999999999999999999999999987654 23456899999999999
Q ss_pred CCCHHHHHHHHHhCC--CCcEEcccCccccccceecccC-cCCCCCCCccccccCCcEEEEEcCCCCCcCCC-CCcceEE
Q 008895 318 PLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVDPETGDSLPP-GKEGELS 393 (549)
Q Consensus 318 ~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g~~Gel~ 393 (549)
++++++++++.+.++ ++.+++.||+||++..++.... .......+++|+|++|++++|+|++++++++. |+.|||+
T Consensus 395 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~ 474 (663)
T 1ry2_A 395 PIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLA 474 (663)
T ss_dssp CCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEE
T ss_pred CCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEE
Confidence 999999999999883 3899999999999876554322 22345678999999999999999658999988 9999999
Q ss_pred Eec--CCcccccCCCccccccccCC--CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceE
Q 008895 394 IRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADA 469 (549)
Q Consensus 394 v~g--~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~ 469 (549)
|+| |+++.|||++++.+...|.. +|||+|||+|++|+||++++.||+||+||++|++|++.|||++|.+||+|.+|
T Consensus 475 i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea 554 (663)
T 1ry2_A 475 VKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAEC 554 (663)
T ss_dssp ESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEE
T ss_pred EecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceE
Confidence 999 58999999999988877753 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCceeEEEEEeCCCCC---C-C------HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcc
Q 008895 470 AVIPYPDEEAGQMPMAFVVRQPHSS---L-N------EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 539 (549)
Q Consensus 470 ~vv~~~~~~~~~~~~~~v~~~~~~~---~-~------~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~ 539 (549)
+|++.+++..++.+++||+++++.. . + .++|+++++++|++|++|+.|+++++||+|++|||+|++|+++
T Consensus 555 ~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 634 (663)
T 1ry2_A 555 AVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKI 634 (663)
T ss_dssp EEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHS
T ss_pred EEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHH
Confidence 9999998888899999999876543 2 2 5789999999999999999999999999999999999999999
Q ss_pred cCcC
Q 008895 540 AVPS 543 (549)
Q Consensus 540 ~~~~ 543 (549)
+...
T Consensus 635 ~~~~ 638 (663)
T 1ry2_A 635 LAGE 638 (663)
T ss_dssp CC--
T ss_pred HcCC
Confidence 8775
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-77 Score=627.25 Aligned_cols=485 Identities=24% Similarity=0.343 Sum_probs=405.7
Q ss_pred CC-HHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHH
Q 008895 38 IS-AVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116 (549)
Q Consensus 38 ~~-~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~ 116 (549)
+| +.+++.++++ + |+++|+++. ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+
T Consensus 23 ~~~~~~~l~~~~~-~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 94 (529)
T 2v7b_A 23 FNFAAYLFRLNET-R----AGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGAL 94 (529)
T ss_dssp CCHHHHHHHHTGG-G----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHH
T ss_pred eeHHHHHHHhhhc-c----CCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 45 7788888888 8 999999987 7899999999999999999998 899999999999999999999999999
Q ss_pred HcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-------CCeEEEecCC--------chhhhhcccCCC
Q 008895 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHRTILIDSP--------EFDSMTMSWNSK 181 (549)
Q Consensus 117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~~~~~~~~~--------~~~~~~~~~~~~ 181 (549)
++|++++|+++.++.+++.+++++++++++|++......+... ...++.++.. .+.++......
T Consensus 95 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 173 (529)
T 2v7b_A 95 YAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAP- 173 (529)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCC-
T ss_pred HcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCC-
Confidence 9999999999999999999999999999999998766544321 1233333321 23333321111
Q ss_pred ccccccccCCCCEEEEEccCCCCCccchhhhcHHHH-HHHHHHhhccCCCCCCCcEEEEecChhhHHHHH-HHHHHhhhc
Q 008895 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL-TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALM 259 (549)
Q Consensus 182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~g 259 (549)
........++++++++|||||||.||+|+++|+++ .+........+ ...++++++..+|++|.+++. ..+.++..|
T Consensus 174 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G 251 (529)
T 2v7b_A 174 -AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251 (529)
T ss_dssp -CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred -cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence 11122356789999999999999999999999999 55554444334 567889999999999999984 456789999
Q ss_pred cEEEEe-cCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEc
Q 008895 260 ETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338 (549)
Q Consensus 260 ~~~~~~-~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~ 338 (549)
+++++. ..+++..+++.+.++++|+++++|+++..++...........++|.+++||+++++++.+++.+.+ ++.+++
T Consensus 252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~ 330 (529)
T 2v7b_A 252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILD 330 (529)
T ss_dssp CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEE
T ss_pred cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceee
Confidence 999987 568999999999999999999999999999886544333134899999999999999999999988 889999
Q ss_pred ccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 008895 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (549)
Q Consensus 339 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~ 418 (549)
.||+||++.+.+.... .....+++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++++.+...|. ++
T Consensus 331 ~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~ 406 (529)
T 2v7b_A 331 GIGSTEMLHIFLSNRA--GAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GE 406 (529)
T ss_dssp EEECTTTSSEEEECCT--TCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TT
T ss_pred eEchhhcCceeecccc--CCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cC
Confidence 9999999766554322 224568999999999999999 7799999999999999999999999999999999884 89
Q ss_pred eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCC---
Q 008895 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSL--- 495 (549)
Q Consensus 419 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~--- 495 (549)
||+|||+|+++++|++++.||+||+||++|++|+|.+||++|.+||+|.+++|++. +...++.++++|+..++...
T Consensus 407 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~ 485 (529)
T 2v7b_A 407 WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEI 485 (529)
T ss_dssp EEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHH
T ss_pred CcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999 55667888999998765432
Q ss_pred CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcc
Q 008895 496 NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 539 (549)
Q Consensus 496 ~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~ 539 (549)
..++|+++++++|+.|++|+.|+++++||+|++||++|++|+++
T Consensus 486 ~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 486 LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp HHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred HHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 24689999999999999999999999999999999999999974
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-78 Score=643.51 Aligned_cols=477 Identities=18% Similarity=0.173 Sum_probs=400.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.+.|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++|++|+++++|++++++++|||++
T Consensus 27 ~tl~~~~~~~a~~~----Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lailk 99 (620)
T 4dg8_A 27 PTVVARFSEMAALH----PHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAILL 99 (620)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 69999999999999 999999998 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|++|.++.+++.++++++++++++++......... .....+. .. .............+++++++
T Consensus 100 aGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~~~-----~~---~~~~~~~~~~~~~~~d~a~i 169 (620)
T 4dg8_A 100 SGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG--LPCVPVR-----HL---PAAPASVARPCFAADQIAYI 169 (620)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT--SCEEEGG-----GC---CCCCCCSSCCCCCTTSEEEE
T ss_pred hCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccC--Cceeeec-----cC---CcCCccccCCCCCCCCeEEE
Confidence 99999999999999999999999999999976543221111 1111111 00 00011112233467899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEec--CcCHHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMMLK 275 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~--~~~~~~~~~ 275 (549)
+|||||||.||||+++|+++.+.... ...+ ...++++++..+|++|..+++.++.++..|+++++.+ .+++..+++
T Consensus 170 iyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~ 247 (620)
T 4dg8_A 170 NFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQ 247 (620)
T ss_dssp EEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHH
T ss_pred EECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHH
Confidence 99999999999999999999876654 2333 4678899999999999999988999999999999964 579999999
Q ss_pred HHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecccCc
Q 008895 276 AVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355 (549)
Q Consensus 276 ~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~ 355 (549)
.|+++++|+++++|+++..+++.. ...++++|.+++|||++++++.+++.+.++++++++.||+||++.+++.....
T Consensus 248 ~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~ 324 (620)
T 4dg8_A 248 LIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVT 324 (620)
T ss_dssp HHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECC
T ss_pred HHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecc
Confidence 999999999999999999998643 23578999999999999999999999888899999999999998876543222
Q ss_pred --CCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCC-------CeeecCceE
Q 008895 356 --DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPD-------GWMRTGDLC 426 (549)
Q Consensus 356 --~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~-------~~~~TGD~~ 426 (549)
.......++|+|+++++++|+|++....++.|+.|||+|+|+++++||+++|+.|.+.|..+ +||+|||+|
T Consensus 325 ~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~ 404 (620)
T 4dg8_A 325 DDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRA 404 (620)
T ss_dssp TGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEE
T ss_pred ccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEE
Confidence 22335578999999999999995544458999999999999999999999999999999754 799999999
Q ss_pred EEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh
Q 008895 427 YIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR 506 (549)
Q Consensus 427 ~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~ 506 (549)
++++||+++++||+||+||++|++|+|.|||++|.+||+|.+|+|++.++...+..+ ++++... +++.+++++
T Consensus 405 ~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv-~~~~~~~------~~~~~~l~~ 477 (620)
T 4dg8_A 405 RYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLL-CAWTGKA------DASPQALLR 477 (620)
T ss_dssp EECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEE-EEEEECT------TCCCHHHHH
T ss_pred EECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEE-EEEecCh------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876444444 4444321 234456778
Q ss_pred cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 507 QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 507 ~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
+|+.|++|+.++++++||+|++|||||++|++++.+.
T Consensus 478 ~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 478 QLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp HSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred hChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 8999999999999999999999999999999887543
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-77 Score=639.36 Aligned_cols=488 Identities=24% Similarity=0.352 Sum_probs=421.9
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++ |+++|++++ ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 27 ~~l~~~~~~~a~------pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l~ 97 (617)
T 3rg2_A 27 LPLTDILTRHAA------SDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALLK 97 (617)
T ss_dssp CCTTHHHHTTTT------CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhC------CCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHHh
Confidence 789999999876 789999998 8999999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccH--------HHHh--cCCCeEE-EecCCc---hhhhhcccCCCcc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA--KLKHRTI-LIDSPE---FDSMTMSWNSKHE 183 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~--~~~~~~~-~~~~~~---~~~~~~~~~~~~~ 183 (549)
+|++++|++|.++.+++.++++++++++++++.... ..+. ......+ ..+... +.+....... .
T Consensus 98 aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 175 (617)
T 3rg2_A 98 LGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAE--D 175 (617)
T ss_dssp HTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCS--S
T ss_pred cCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhccccc--c
Confidence 999999999999999999999999999999987643 1111 1122222 222221 2222221111 1
Q ss_pred ccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHH--HHHHHhhhccE
Q 008895 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMET 261 (549)
Q Consensus 184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~g~~ 261 (549)
.......++++++++|||||||.||||+++|+++.+.+......+ ...+++++++.+|++|.+++. ..+.++..|++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~ 254 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT 254 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCE
Confidence 122334678999999999999999999999999999888877766 467889999999999998884 58899999999
Q ss_pred EEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+++.+..++..+++.++++++|+++++|+++..+++.... ....++++|.+++|||++++++.+++.+.+ ++++++.
T Consensus 255 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 255 VVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9999888999999999999999999999999988765432 223689999999999999999999999998 8899999
Q ss_pred cCccccccceecccCcCCCCCCCcccccc-CCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCC
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG 418 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~ 418 (549)
||+||++..+.... ........++|.|+ ++.+++|+| +++++++.|+.|||+|+|+++++||+++|+.|.++|..++
T Consensus 334 YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~ 411 (617)
T 3rg2_A 334 FGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 411 (617)
T ss_dssp EEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTS
T ss_pred eccCcceeecccCC-CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCC
Confidence 99999876544321 11112235789997 788999999 7899999999999999999999999999999999999999
Q ss_pred eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHH
Q 008895 419 WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEA 498 (549)
Q Consensus 419 ~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~ 498 (549)
||+|||+|++++||.++++||+||+||++|++|+|.+||++|.+||+|.+++|++.++...++.++++++..+ ..+.+
T Consensus 412 ~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~ 489 (617)
T 3rg2_A 412 FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAV 489 (617)
T ss_dssp CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHH
T ss_pred ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999998888889999999875 46789
Q ss_pred HHHHHHHh-cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 499 EIMEFVAR-QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 499 ~i~~~l~~-~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++++++++ .|+.|++|..++++++||+|++|||||++|++++.+
T Consensus 490 ~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 490 QVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp HHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 99999998 699999999999999999999999999999987643
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-77 Score=630.82 Aligned_cols=493 Identities=23% Similarity=0.339 Sum_probs=417.8
Q ss_pred CC-HHHHHhhcccC-----CCCCCCCCcEEEECC---CCceecHHHHHHHHHHHHHHhHHhc-CCCCCCEEEEEcCCCCh
Q 008895 38 IS-AVDYVSSLRAT-----LPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIE 107 (549)
Q Consensus 38 ~~-~~~~~~~~~~~-----~~~~~p~~~a~~~~~---~~~~~Ty~el~~~a~~~A~~L~~~~-g~~~g~~V~i~~~~~~~ 107 (549)
.+ +.+++.+.+++ + |+++|+++.. .++++||+||.++++++|++|++ . |+++||+|+++++|+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~----p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKR----PPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSS----CCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHH
T ss_pred ccHHHHHHHHHHhhccccCC----CCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHH
Confidence 45 45777777777 8 9999998731 23789999999999999999998 7 99999999999999999
Q ss_pred HHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----C-CC-eEEEecCC------chhhhh
Q 008895 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L-KH-RTILIDSP------EFDSMT 175 (549)
Q Consensus 108 ~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~-~~-~~~~~~~~------~~~~~~ 175 (549)
+++++|||+++|++++|++|.++.+++.+++++++++++|+++.....+.. . .. .++.++.. .+.++.
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLL 191 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHH
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHh
Confidence 999999999999999999999999999999999999999999887665532 1 12 23444431 233332
Q ss_pred cccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHH--HHHHhhccCCCCCCCcEEEEecChhhHHHHH-HH
Q 008895 176 MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FC 252 (549)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~ 252 (549)
..... ........++++++|+|||||||.||+|.++|+ ++. ..... ..+ +..++|+++..+|++|.+++. .+
T Consensus 192 ~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~~~~~d~~~~~~p~~~~~~~~~~~ 266 (570)
T 3c5e_A 192 NEAST--THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-GLQASDIMWTISDTGWILNILCSL 266 (570)
T ss_dssp HHSCS--CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-SCCTTCEEEECCCTTSHHHHHHTT
T ss_pred hcccc--cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-CCCCCceEEEcCchHHHHHHHHHH
Confidence 22111 111223467899999999999999999999999 544 33333 333 567889999999999999985 67
Q ss_pred HHHhhhccEEEEec--CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHh
Q 008895 253 FRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330 (549)
Q Consensus 253 ~~~l~~g~~~~~~~--~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~ 330 (549)
+.++..|+++++.. .+++..+++.|+++++|+++++|+++..+++.. ....+++++|.+++||+++++++.+++.+.
T Consensus 267 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 345 (570)
T 3c5e_A 267 MEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQ 345 (570)
T ss_dssp HHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence 88899999999886 689999999999999999999999999998763 334468899999999999999999999998
Q ss_pred CCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEe-----cCCcccccCC
Q 008895 331 FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-----GPTIMKGYVG 405 (549)
Q Consensus 331 ~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~-----g~~~~~gy~~ 405 (549)
+ ++.+++.||+||++..+.... ......+++|+|+++++++|+| +++++++.|+.|||+|+ |++++.||++
T Consensus 346 ~-g~~i~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~ 421 (570)
T 3c5e_A 346 T-GLDIRESYGQTETGLTCMVSK--TMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD 421 (570)
T ss_dssp H-SCCCEEEEEETTTEEEEECCT--TSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETT
T ss_pred h-CCchhhccchhhcccceecCc--ccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccC
Confidence 8 789999999999986655432 2234568999999999999999 67899999999999999 9999999999
Q ss_pred CccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEE
Q 008895 406 EPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMA 485 (549)
Q Consensus 406 ~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~ 485 (549)
+++.+...| .++||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+++
T Consensus 422 ~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a 500 (570)
T 3c5e_A 422 NPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKA 500 (570)
T ss_dssp CHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEE
Confidence 999999988 4899999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEeCCCC--CC---CHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCCCC
Q 008895 486 FVVRQPHS--SL---NEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 546 (549)
Q Consensus 486 ~v~~~~~~--~~---~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~~~ 546 (549)
+|++.++. .. ..++|+++++++|+.|++|+.|+++++||+|++|||+|++|++++...+.+
T Consensus 501 ~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~s~~ 566 (570)
T 3c5e_A 501 FVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGK 566 (570)
T ss_dssp EEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC----
T ss_pred EEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhhhhc
Confidence 99987543 11 257899999999999999999999999999999999999999998766554
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-77 Score=625.95 Aligned_cols=481 Identities=23% Similarity=0.346 Sum_probs=392.1
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
+|+.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ . +||+|+++++|++++++++|||++
T Consensus 1 mtl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~ 70 (501)
T 3ipl_A 1 MSLDFWLYKQAQQN----GHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWL 70 (501)
T ss_dssp --CCCHHHHHHHHH----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----CCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 46778899999999 999999987 7899999999999999999998 4 899999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC----CCeEEEec----C-------Cchhhh---hcccC
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILID----S-------PEFDSM---TMSWN 179 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~----~-------~~~~~~---~~~~~ 179 (549)
+|++++|+++.++.+++.+++++++++++|++.......... ....+... . ..+... .....
T Consensus 71 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (501)
T 3ipl_A 71 ANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKE 150 (501)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------C
T ss_pred cCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccC
Confidence 999999999999999999999999999999987654332110 00000000 0 000000 00000
Q ss_pred CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhc
Q 008895 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g 259 (549)
...........++++++++|||||||.||+|.++|+++.+........+ ...+++++++.+|++|.+|+...+.++..|
T Consensus 151 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G 229 (501)
T 3ipl_A 151 SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLSVLPIYHISGLSVLLRAVIEG 229 (501)
T ss_dssp CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEEeCcHHHHHHHHHHHHHHHcC
Confidence 0001112235678999999999999999999999999999888877777 577889999999999999998889999999
Q ss_pred cEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
+++++.+.+++..+++.|+++++|+++++|+++..|++...... .++|.+++||+++++++.+++.+. ++++++.
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~ 304 (501)
T 3ipl_A 230 FTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNS 304 (501)
T ss_dssp CEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred ceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence 99999999999999999999999999999999999988664432 289999999999999999999884 8899999
Q ss_pred cCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCe
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGW 419 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~ 419 (549)
||+||++..+............+++|+|+++++++|+|++ .|+.|||+|+|+.++.||+++++.+.. | .+||
T Consensus 305 YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~ 376 (501)
T 3ipl_A 305 FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGY 376 (501)
T ss_dssp EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTE
T ss_pred ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCc
Confidence 9999998765543332233456789999999999999954 466799999999999999999999887 5 6899
Q ss_pred eecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHH
Q 008895 420 MRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAE 499 (549)
Q Consensus 420 ~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~ 499 (549)
|+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++++.. ...+.++
T Consensus 377 ~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~ 454 (501)
T 3ipl_A 377 FNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQ 454 (501)
T ss_dssp EEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHH
T ss_pred eecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999864 3568899
Q ss_pred HHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 500 IMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 500 i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
++++++++|+.|++|+.|+++++||+|++|||+|++|++...+..
T Consensus 455 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~ 499 (501)
T 3ipl_A 455 LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHH 499 (501)
T ss_dssp HHHHHHHHSCGGGSCSEEEECSSCC--------------------
T ss_pred HHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccccc
Confidence 999999999999999999999999999999999999999876643
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-78 Score=626.45 Aligned_cols=474 Identities=25% Similarity=0.387 Sum_probs=391.3
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|+.+.|.++++++| ||++|+++. ++++||+||.++++++|++|.. |++|+++++|++++++++|||++
T Consensus 22 ~tl~~~l~~~a~~~p---~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~------~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 22 SSLFPALSPAPTGAP---ADRPALRFG--ERSLTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp --CCTTTSSCCCSGG---GGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCC---CCCeEEEEC--CeeeeHHHHHHHHHHHHhhccC------CCEEEEEcCCCHHHHHHHHHHHH
Confidence 578888899988882 349999998 8999999999999999988753 78999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcccCCCccccccccCCCCEEEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI 197 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 197 (549)
+|++++|++|.++.+++.+++++++++++|++..............+.++... ..........+++++++
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~d~a~i 160 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRA----------RGAVPEDGADDGDPALV 160 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTC----------CCCCCCCCCCTTSEEEE
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccccccc----------ccCCCCCCCCCCCeEEE
Confidence 99999999999999999999999999999998652111011122222222110 00112233567899999
Q ss_pred EccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHHHHHH
Q 008895 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKA 276 (549)
Q Consensus 198 ~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~ 276 (549)
+|||||||.||+|+++|+++.+........+ ...+++++++.+|++|.+|+ ..++.++..|+++++.+.+++..+++.
T Consensus 161 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~ 239 (505)
T 3nyq_A 161 VYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE 239 (505)
T ss_dssp EEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH
T ss_pred EeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH
Confidence 9999999999999999999999888777766 56788999999999999998 567899999999999999999999999
Q ss_pred HHHhceeeeeecHHHHHHHHhCCCCC---CCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceeccc
Q 008895 277 VEEFRVTHAAVTPPIVVAMSKGGSTD---GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353 (549)
Q Consensus 277 l~~~~~t~l~~~P~~l~~l~~~~~~~---~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~ 353 (549)
+ ++++|+++++|+++..+++..... ...++++|.+++||+++++++.+++.+.+ ++++++.||+||++..+...
T Consensus 240 i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~- 316 (505)
T 3nyq_A 240 L-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVR- 316 (505)
T ss_dssp H-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC-
T ss_pred H-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccC-
Confidence 9 889999999999999988743221 22467899999999999999999999987 88999999999998765543
Q ss_pred CcCCCCCCCccccccCCcEEEEEcCCCCCcCCC---CCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec
Q 008895 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP---GKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430 (549)
Q Consensus 354 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~ 430 (549)
.......+++|+|+++++++|+| +++++++. |+.|||+|+|++++.||+++|+.+...|..+|||+|||+|++++
T Consensus 317 -~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~ 394 (505)
T 3nyq_A 317 -ADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394 (505)
T ss_dssp -TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT
T ss_pred -CCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC
Confidence 23334567899999999999999 66777765 89999999999999999999999999998899999999999999
Q ss_pred CCeEEEEccc-CCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCC-CCCCCHHHHHHHHHhcC
Q 008895 431 DGFLFIVDRL-KDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP-HSSLNEAEIMEFVARQV 508 (549)
Q Consensus 431 ~g~~~~~GR~-~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~-~~~~~~~~i~~~l~~~l 508 (549)
+|.+++.||+ ||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.+ ....+.++|+++|+++|
T Consensus 395 dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L 474 (505)
T 3nyq_A 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARL 474 (505)
T ss_dssp TSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHT
T ss_pred CccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhC
Confidence 9999999997 589999999999999999999999999999999999888999999999876 34567899999999999
Q ss_pred CCCCcccEEEEeCccCCCCCCcccHHHHHc
Q 008895 509 SPYKKIRRVAFINAIPKSAAGKILRMELRK 538 (549)
Q Consensus 509 ~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~ 538 (549)
+.|++|+.|+++++||+|++|||+|++|++
T Consensus 475 ~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 475 APHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp CGGGSCSEEEECSCCCC-------------
T ss_pred CCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 999999999999999999999999999986
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-74 Score=664.44 Aligned_cols=483 Identities=22% Similarity=0.275 Sum_probs=420.6
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.++.++|.++++++ |+++|+++. ++++||+||.++++++|++|++ .|+++|++|+|++++++++++++|||++
T Consensus 464 ~~l~~~~~~~~~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailk 536 (1304)
T 2vsq_A 464 KPLTYWFKEAVNAN----PDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLK 536 (1304)
T ss_dssp CCHHHHHHHHHHHC----TTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999 999999987 7899999999999999999999 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCC--CeEEEecCCchhhhhcccCCCccccccccCCCCEE
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 195 (549)
+|+++||++|.++.+++.++++++++++++++........... ...+.++.. ..... . . ........+++++
T Consensus 537 aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~--~-~~~~~~~~~~~~a 610 (1304)
T 2vsq_A 537 AGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ--TRFEE-Q--A-SDPATAIDPNDPA 610 (1304)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG--GGGGS-C--S-SCCCCCCCTTSEE
T ss_pred HCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc--ccccc-c--c-CCCCCCCCCCCeE
Confidence 9999999999999999999999999999999987655433221 223333321 11111 0 1 1122345678999
Q ss_pred EEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecC---cCHHH
Q 008895 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM 272 (549)
Q Consensus 196 ~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~---~~~~~ 272 (549)
+++|||||||.||||+++|+++.+. ......+ ...+.++++...|+.|..+.+.++.++..|+++++.+. .++..
T Consensus 611 yiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~ 688 (1304)
T 2vsq_A 611 YIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTER 688 (1304)
T ss_dssp EEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHH
T ss_pred EEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHH
Confidence 9999999999999999999999876 3333444 56788999999999998888889999999999999864 68999
Q ss_pred HHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccccccceecc
Q 008895 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352 (549)
Q Consensus 273 ~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~ 352 (549)
+.+.|.++++|+++++|+++..+.+.. ...++++|.+++|||++++++.+++.+.+++.++++.||+||++.++...
T Consensus 689 l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 765 (1304)
T 2vsq_A 689 LTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAH 765 (1304)
T ss_dssp HHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheee
Confidence 999999999999999999999997643 12367899999999999999999999988778999999999998876654
Q ss_pred cCcC--CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCC------CCeeecCc
Q 008895 353 VGPD--ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLP------DGWMRTGD 424 (549)
Q Consensus 353 ~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------~~~~~TGD 424 (549)
.... ......++|+|++|++++|+| +.+++++.|+.|||+|+|+++++||+++|+.|.++|.. ++||+|||
T Consensus 766 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGD 844 (1304)
T 2vsq_A 766 VVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGD 844 (1304)
T ss_dssp ECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEE
T ss_pred eccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCC
Confidence 3222 223456899999999999999 67899999999999999999999999999999998853 35999999
Q ss_pred eEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHH
Q 008895 425 LCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV 504 (549)
Q Consensus 425 ~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l 504 (549)
+|++++||.++++||+||+||++|++|+|.|||++|.++|+|.+++|++.++...+..++++++... ..+.+++++++
T Consensus 845 l~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~~l 922 (1304)
T 2vsq_A 845 LARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAEDVKAHL 922 (1304)
T ss_dssp EEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHHHHHHHH
T ss_pred eEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988878889999998764 46789999999
Q ss_pred HhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccC
Q 008895 505 ARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 541 (549)
Q Consensus 505 ~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~ 541 (549)
+++|+.||+|..|+++++||+|+||||||++|++...
T Consensus 923 ~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 923 KKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp HHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred HHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 9999999999999999999999999999999987654
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-75 Score=619.48 Aligned_cols=495 Identities=22% Similarity=0.283 Sum_probs=413.9
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECC--CCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la 114 (549)
..|+.++|.++++++ |+++|+++.. .++++||+||.++++++|++|++ .|+++||+|+++++|++++++++||
T Consensus 10 ~~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA 84 (590)
T 3kxw_A 10 CQSLVDVVRLRALHS----PNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLG 84 (590)
T ss_dssp CSSHHHHHHHHHHHC----TTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhC----CCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHH
Confidence 379999999999999 9999997632 24799999999999999999999 8999999999999999999999999
Q ss_pred HHHcCCeEccCCCCC---CHHHHHHHHhhcCCeEEEEcCccHHHHhcCC---C----eEEEecCCchhhhhcccCCCccc
Q 008895 115 LLSLGVIISPANPVN---TESEISRQIQLSNPVIAFATSSVVHKLAKLK---H----RTILIDSPEFDSMTMSWNSKHEL 184 (549)
Q Consensus 115 ~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~ 184 (549)
|+++|++++|++|.. +.+++.++++.+++++++++......+.... . ....+. .+.+.... ....
T Consensus 85 ~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~ 159 (590)
T 3kxw_A 85 CLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA---LESIELNR--SSSW 159 (590)
T ss_dssp HHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---GGGCCGGG--GGGC
T ss_pred HHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---chhccccc--cccC
Confidence 999999999999988 4578999999999999999987766554321 0 011111 11110000 0011
Q ss_pred cccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHH-HHHHhhhccEEE
Q 008895 185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAV 263 (549)
Q Consensus 185 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~-~~~~l~~g~~~~ 263 (549)
......++++++|+|||||||.||+|+++|+++.+.+......+ ...+++++++.+|++|.+|+.. ++.++..|++++
T Consensus 160 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v 238 (590)
T 3kxw_A 160 QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAI 238 (590)
T ss_dssp CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEE
T ss_pred CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEE
Confidence 22345678999999999999999999999999999998887777 5788999999999999999965 788999999999
Q ss_pred EecCc----CHHHHHHHHHHhceeeeeecHHHHHHHHhCCC---CCCCCCCCceEEEEecCCCCHHHHHHHHHhCC----
Q 008895 264 VMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIMAFASKFP---- 332 (549)
Q Consensus 264 ~~~~~----~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~---~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~---- 332 (549)
+.+++ ++..+++.|+++++|++.++|.++..+++... ....+++++|.+++||+++++++.+++.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~ 318 (590)
T 3kxw_A 239 MMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGF 318 (590)
T ss_dssp ECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred EeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCC
Confidence 98765 78999999999999999999999988877532 34556899999999999999999999999873
Q ss_pred -CCcEEcccCccccccceecccCc-------------------------CCCCCCCccccccCCcEEEEEcCCCCCcCCC
Q 008895 333 -KVVLVQAYGLTESTAGVFRTVGP-------------------------DECRRWGSTGRLSAGLEAKIVDPETGDSLPP 386 (549)
Q Consensus 333 -~~~l~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~ 386 (549)
+..+++.||+||++.+++..... ......+++|+|+++ ++|+|++++.+++.
T Consensus 319 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~ 396 (590)
T 3kxw_A 319 RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDF 396 (590)
T ss_dssp CGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCT
T ss_pred CccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCC
Confidence 45799999999999876643211 111233678999998 88899888999999
Q ss_pred CCcceEEEecCCcccccCCCccccccccCC------CC--eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHH
Q 008895 387 GKEGELSIRGPTIMKGYVGEPEVTSATLLP------DG--WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEH 458 (549)
Q Consensus 387 g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~ 458 (549)
|+.|||+|+|++++.||+++|+.|.+.|.. +| ||+|||+|++| +|.+++.||+||+||++|++|+|.+||+
T Consensus 397 g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~ 475 (590)
T 3kxw_A 397 DQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEF 475 (590)
T ss_dssp TBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHH
T ss_pred CCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHH
Confidence 999999999999999999999999998864 24 99999999999 9999999999999999999999999999
Q ss_pred HH-HcCCCcc--eEEEEeecCCCCCceeEEEEEeCCCC--CCCHHHHHHHHHhcCCC-CCccc-EEEEe--CccCCCCCC
Q 008895 459 LL-LSHREVA--DAAVIPYPDEEAGQMPMAFVVRQPHS--SLNEAEIMEFVARQVSP-YKKIR-RVAFI--NAIPKSAAG 529 (549)
Q Consensus 459 ~l-~~~~~v~--~~~vv~~~~~~~~~~~~~~v~~~~~~--~~~~~~i~~~l~~~l~~-~~~p~-~i~~v--~~lP~t~~G 529 (549)
+| ..+|.|. +|+|++++++. ++.++++++..+.. ..+.+++.++++++|+. ++.|. .++++ ++||+|++|
T Consensus 476 ~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sG 554 (590)
T 3kxw_A 476 SLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSG 554 (590)
T ss_dssp HHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCH
T ss_pred HHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCc
Confidence 99 7889998 79999988765 67788888877653 34567899999998875 67775 55555 799999999
Q ss_pred cccHHHHHcccCcCCCC
Q 008895 530 KILRMELRKVAVPSGSS 546 (549)
Q Consensus 530 Kv~r~~l~~~~~~~~~~ 546 (549)
||+|++|++++.++.++
T Consensus 555 Ki~R~~L~~~~~~~~~~ 571 (590)
T 3kxw_A 555 KIRRNFCRKHLLDKTLP 571 (590)
T ss_dssp HHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 99999999999888764
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-74 Score=612.08 Aligned_cols=493 Identities=17% Similarity=0.190 Sum_probs=317.7
Q ss_pred CCCHHHHHhhcccCCCCCCCCCcEEEECCC--------CceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChH
Q 008895 37 PISAVDYVSSLRATLPWRDDDTVALINSVT--------GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI 108 (549)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~--------~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~ 108 (549)
++|+.++|.++++++ |+++|+++... ++++||+||.++++++|+.|.+ .|+ +||+|+++++|++++
T Consensus 19 ~~tl~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 19 TVPPSHYIETWAKTH----PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp CCCTTHHHHHHHHHC----TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHH
T ss_pred cCCHHHHHHHHHHHC----CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHH
Confidence 389999999999999 99999986421 2789999999999999999998 899 799999999999999
Q ss_pred HHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-CCeEEEecCCchhhhhcccCCCcccccc
Q 008895 109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRA 187 (549)
Q Consensus 109 ~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (549)
++++|||+++|++++|++|.++.+++.+++++++++++|+++......... ....+......+.+....... .....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 170 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDT--SDILN 170 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCC--SCCCC
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccc--ccccc
Confidence 999999999999999999999999999999999999999987654433211 122222222222222221111 11122
Q ss_pred ccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC-------CCCCCCcEEEEecChhhHHHHHHHHHHhhhcc
Q 008895 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALME 260 (549)
Q Consensus 188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~ 260 (549)
...++++++++|||||||.||+|+++|+++.+........+ ......+++++..|+.|..++...+.++..|+
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 250 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL 250 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence 34567899999999999999999999999988776543321 12466789999999999888888888999999
Q ss_pred EEEEecCcC-HHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcc
Q 008895 261 TAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA 339 (549)
Q Consensus 261 ~~~~~~~~~-~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~ 339 (549)
++++...+. +..+.+.++++++|+++++|+++..+... ..+++++|.+++||+++++++.+++.+.+ ++.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~ 325 (562)
T 3ite_A 251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNV 325 (562)
T ss_dssp EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEE
T ss_pred EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEe
Confidence 999876543 57788999999999999999998877433 34578999999999999999999999876 8899999
Q ss_pred cCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCC-
Q 008895 340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDG- 418 (549)
Q Consensus 340 yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~- 418 (549)
||+||++..+...... .....+++|+|+++++++|+|++++.+++.|+.|||+|+|++++.|||++|+.+...+. +|
T Consensus 326 YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~ 403 (562)
T 3ite_A 326 YGPTEVTIGCSAGRIL-PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDI-NGR 403 (562)
T ss_dssp ECCGGGCSCSEEEECC-TTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEE-TTE
T ss_pred eccchheeeeeeeeec-CCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccC-CCC
Confidence 9999998766543322 23456789999999999999988899999999999999999999999999998887653 55
Q ss_pred -eeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcC-CCcceEEEEeecCCCCCceeEEEEEeCCCCCC-
Q 008895 419 -WMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSH-REVADAAVIPYPDEEAGQMPMAFVVRQPHSSL- 495 (549)
Q Consensus 419 -~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~-~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~- 495 (549)
||+|||+|++|+||++++.||+||+||++|++|+|.|||++|.++ +.+.+++|++.+++..++..++.++...+...
T Consensus 404 ~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~ 483 (562)
T 3ite_A 404 KMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVR 483 (562)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEC---------------------------------------------------------
T ss_pred EEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccccccc
Confidence 999999999999999999999999999999999999999999998 78888888888887777665555554333222
Q ss_pred ------------CHHHHHHHHHhcCCCCCcccEEEEeCccCCC-CCCcccHHHHHcccCcCC
Q 008895 496 ------------NEAEIMEFVARQVSPYKKIRRVAFINAIPKS-AAGKILRMELRKVAVPSG 544 (549)
Q Consensus 496 ------------~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t-~~GKv~r~~l~~~~~~~~ 544 (549)
..++|+++|+++|+.|++|+.|+++++||+| ++||++|++|++++.+..
T Consensus 484 ~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~ 545 (562)
T 3ite_A 484 GELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLS 545 (562)
T ss_dssp --------------------------------------------------------------
T ss_pred ccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccC
Confidence 1358999999999999999999999999998 899999999999987644
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-60 Score=490.32 Aligned_cols=385 Identities=21% Similarity=0.280 Sum_probs=315.8
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECC-----CC--ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSV-----TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v 110 (549)
.|+.++|.++++++ |+++|+++.. ++ +++||+||.++++++|++|++ .|+ +||+|+++++|++++++
T Consensus 24 ~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~ 97 (480)
T 3t5a_A 24 RSLPAALRACARLQ----PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVV 97 (480)
T ss_dssp CCHHHHHHHHHHHS----TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHH
T ss_pred ccHHHHHHHHHHhC----CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHH
Confidence 79999999999999 9999998752 22 789999999999999999998 896 99999999999999999
Q ss_pred HHHHHHHcCCeEccCCC---CCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCC--------eEEEecCCchhhhhcccC
Q 008895 111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH--------RTILIDSPEFDSMTMSWN 179 (549)
Q Consensus 111 ~~la~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 179 (549)
++|||+++|++++|+++ .++.+++.+++++++++++|++......+..... .++.++... .. .
T Consensus 98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~ 171 (480)
T 3t5a_A 98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-----LD-A 171 (480)
T ss_dssp HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-----TT-C
T ss_pred HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-----cc-c
Confidence 99999999999999999 7789999999999999999999988776654321 122221110 00 0
Q ss_pred CCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCC------CcEEEEecChhhHHHH-HHH
Q 008895 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------PAVMLFTMPYFHIYGL-FFC 252 (549)
Q Consensus 180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~------~~~~~~~~pl~~~~g~-~~~ 252 (549)
..........++++++|+|||||||.||+|+++|+++.+++......+. ... .+++++.+|++|.+|+ ..+
T Consensus 172 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 249 (480)
T 3t5a_A 172 -PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYF-ADTDGIPPPNSALVSWLPFYHDMGLVIGI 249 (480)
T ss_dssp -C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHC-TTTTTCCCTTEEEEECCCTTSTTHHHHHT
T ss_pred -ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhc-cccccCCCCCCeEEEeCCCcCccHHHHHH
Confidence 1111233456789999999999999999999999999888877665552 333 8999999999999997 567
Q ss_pred HHHhhhccEEEEecCc----CHHHHHHHHHHhceeeeeecHHHHHHHHhC----CCCCCCCCCCceEEEEecCCCCHHHH
Q 008895 253 FRAAALMETAVVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKG----GSTDGYDLSSLETVACGAAPLGKDTI 324 (549)
Q Consensus 253 ~~~l~~g~~~~~~~~~----~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~----~~~~~~~l~~lr~v~~~Ge~l~~~~~ 324 (549)
+.++..|+++++.++. ++..+++.++++++| +..+|+++..++.. ......++++||.+++||+++++++.
T Consensus 250 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 328 (480)
T 3t5a_A 250 CAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATI 328 (480)
T ss_dssp HHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHH
T ss_pred HHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHH
Confidence 8899999999998753 899999999999999 78889988877653 22345678999999999999999999
Q ss_pred HHHHHhC-----CCCcEEcccCccccccceecccCcCC-----------------------CCCCCccccccCCcEEEEE
Q 008895 325 MAFASKF-----PKVVLVQAYGLTESTAGVFRTVGPDE-----------------------CRRWGSTGRLSAGLEAKIV 376 (549)
Q Consensus 325 ~~~~~~~-----~~~~l~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~~~~~~~~~i~ 376 (549)
+++.+.+ +++.+++.||+||++..++....... ....+++|+|++ ++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv 407 (480)
T 3t5a_A 329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV 407 (480)
T ss_dssp HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence 9999998 34689999999999987765432211 123458999999 999999
Q ss_pred cCCCCCcCCCCCcceEEEecCCcccccCCCccccccccC-----------CCCeeecCceEEEecCCeEEEEcc
Q 008895 377 DPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLL-----------PDGWMRTGDLCYIDEDGFLFIVDR 439 (549)
Q Consensus 377 d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~~g~~~~~GR 439 (549)
|++++++++.|+.|||+|+|++++.||+++|+.|.+.|. .+|||+|||+|+++ ||+++++||
T Consensus 408 d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp ETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 988899999999999999999999999999999999985 46799999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=430.01 Aligned_cols=317 Identities=19% Similarity=0.219 Sum_probs=271.0
Q ss_pred CCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEecCcCH
Q 008895 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL 270 (549)
Q Consensus 191 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~~~~~~ 270 (549)
.+++++|+|||||||.||+|+++|+++.+++......+ ...++|++++.+|++|.+|+..++.++..|+++++..+.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--
Confidence 46899999999999999999999999999988887777 578889999999999999998888999999999887642
Q ss_pred HHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcccccccee
Q 008895 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350 (549)
Q Consensus 271 ~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~ 350 (549)
...++.|+++++|+++++|+++..+++.... ..+++++|.+++||+++++++.+++.+. ++++++.||+||++..+.
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 1346678899999999999999999987643 3468999999999999999999999875 889999999999988766
Q ss_pred cccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec
Q 008895 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE 430 (549)
Q Consensus 351 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~ 430 (549)
.... .....+++|.+.||+.+.+.+ .|||+++|+. ..+|||+|||+|++|+
T Consensus 190 ~~~~--~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~----------------~~~g~~~TGDlg~~d~ 240 (358)
T 4gs5_A 190 LKAL--NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAV----------------TNGQTVQTNDLVEIHG 240 (358)
T ss_dssp EEEC--SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGG----------------GTTCCEEEEEEEEECS
T ss_pred cccc--cccccceeeccCCCeEEEecC-----------cCceEEeccc----------------ccCcceecCCcccccc
Confidence 5332 234567889999999988754 4999998863 2478999999999998
Q ss_pred CCeEEEEcccCCeeeeCcEeeChHHHHHHH---HcCCCcceEEEE-eecCCCCCceeEEEEEeCCCCCCCHHHHHHHHHh
Q 008895 431 DGFLFIVDRLKDLIKYKGYQVAPAELEHLL---LSHREVADAAVI-PYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVAR 506 (549)
Q Consensus 431 ~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l---~~~~~v~~~~vv-~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~~ 506 (549)
+| ++++||+||+||++|++|+|.+||++| .+||+|.+++|+ +.+++..++.++++|+... .....++|+++|++
T Consensus 241 ~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~-~~~~~~~l~~~l~~ 318 (358)
T 4gs5_A 241 NA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM-PEALTERLTAEIRS 318 (358)
T ss_dssp SE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC-CHHHHHHHHHHHHH
T ss_pred Cc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC-CCcCHHHHHHHHHh
Confidence 88 667799999999999999999999877 468999998876 5677778888888887543 33456889999999
Q ss_pred cCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcCC
Q 008895 507 QVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSG 544 (549)
Q Consensus 507 ~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~~ 544 (549)
+|+.|++|+.|+++++||+|++|||+|++|++++.+..
T Consensus 319 ~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 319 RVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred hCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 99999999999999999999999999999999887653
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=411.58 Aligned_cols=326 Identities=21% Similarity=0.224 Sum_probs=270.4
Q ss_pred CC-CCEEEEEccCCCCCccchhhhcHHHHHHHHHHhh---ccCCCCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEE
Q 008895 190 CQ-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVV 264 (549)
Q Consensus 190 ~~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~ 264 (549)
.+ +++++++|||||||.||+|.++|+++.+...... ..+ +..++++++..+|+.|..+. ...+.++..|+++++
T Consensus 83 ~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 83 DMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp CHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 44 7899999999999999999999999977665542 223 46788999999998655554 667888999999999
Q ss_pred ecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCC--CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCc
Q 008895 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (549)
Q Consensus 265 ~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~ 342 (549)
.+.+++..+++.|+++++|+++++|+++..|++.....+. .++++|.+++|||++++++.+++.+.| ++.+++.||+
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 240 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGM 240 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcc
Confidence 8888999999999999999999999999999876543333 378999999999999999999999999 8999999999
Q ss_pred cccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeec
Q 008895 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRT 422 (549)
Q Consensus 343 tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 422 (549)
||+++.++.... ......+.+.+++.++|+|++++++++.|+.|||+|+|.. ...+ +++||+|
T Consensus 241 TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~~~y~T 303 (436)
T 3qov_A 241 TEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PLIRYRT 303 (436)
T ss_dssp GGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CCCSEEE
T ss_pred hhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eEEEEEc
Confidence 999544222111 1223467778899999999999999999999999999842 2333 6899999
Q ss_pred CceEEEecCC------e---EEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC
Q 008895 423 GDLCYIDEDG------F---LFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS 493 (549)
Q Consensus 423 GD~~~~~~~g------~---~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~ 493 (549)
||+|+++++| + +++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++. +.
T Consensus 304 GDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~ 382 (436)
T 3qov_A 304 RDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DL 382 (436)
T ss_dssp EEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TT
T ss_pred CCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Cc
Confidence 9999999998 5 699999999999999999999999999999999999999998877788999999988 54
Q ss_pred CCC----HHHHHHHHHhcCCCC-CcccEEEEeC--ccCCCCCCcccHHHH
Q 008895 494 SLN----EAEIMEFVARQVSPY-KKIRRVAFIN--AIPKSAAGKILRMEL 536 (549)
Q Consensus 494 ~~~----~~~i~~~l~~~l~~~-~~p~~i~~v~--~lP~t~~GKv~r~~l 536 (549)
..+ .+++.++++++|+.+ +.|..+.+++ +||+|+ ||++|...
T Consensus 383 ~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~ 431 (436)
T 3qov_A 383 STDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVKD 431 (436)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEEE
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEEe
Confidence 444 678999999999888 8899999998 999999 99998643
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-50 Score=412.89 Aligned_cols=331 Identities=21% Similarity=0.239 Sum_probs=275.0
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhc---cCCCCCCCcEEEEecCh-hhHHHHHHHHHHhhhccEEEE
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~g~~~~~ 264 (549)
..++++++++|||||||.||+|.++|+++......... .+ +..++++++..+|+ +|..++...+.++..|++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 35678899999999999999999999998776544322 33 46788999999998 577777778888999999999
Q ss_pred ecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCC--CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCc
Q 008895 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (549)
Q Consensus 265 ~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~ 342 (549)
.+.++++.+++.|+++++|+++++|+++..|++.....+.+ ++++|.+++|||++++++++++.+.+ ++.+++.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 88889999999999999999999999999988754333333 47999999999999999999999998 8999999999
Q ss_pred cccccc-eecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 008895 343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (549)
Q Consensus 343 tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (549)
||+++. .+.... . .....+.+.+++.++|+|++++++++.|+.|||+|+|.. ...| +++||+
T Consensus 247 TE~~g~~~~~~~~-~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t------------~~~~-p~~~y~ 309 (443)
T 2y4o_A 247 SEVMGPGVACECV-E---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT------------KEAM-PVIRYR 309 (443)
T ss_dssp TTTTEEEEEEECT-T---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS------------CSSS-CCSSEE
T ss_pred hhhcCCeEEeccC-C---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC------------cccC-hhheee
Confidence 997432 222111 1 111255667899999999888999999999999999832 2334 678999
Q ss_pred cCceEEEecC-CeE-----EEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCC--C-
Q 008895 422 TGDLCYIDED-GFL-----FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQP--H- 492 (549)
Q Consensus 422 TGD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~--~- 492 (549)
|||+|+++++ |++ ++.||.||+||++|++|+|.+||++|.++|+|.+++|+++++...++.++++|+..+ +
T Consensus 310 TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~ 389 (443)
T 2y4o_A 310 TRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA 389 (443)
T ss_dssp EEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT
T ss_pred cCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc
Confidence 9999999999 986 899999999999999999999999999999999999998877666788899998865 2
Q ss_pred --CCCCHHHHHHHHHhcCCCCC-cccEEEEe--CccCCCCCCcccHHHHHc
Q 008895 493 --SSLNEAEIMEFVARQVSPYK-KIRRVAFI--NAIPKSAAGKILRMELRK 538 (549)
Q Consensus 493 --~~~~~~~i~~~l~~~l~~~~-~p~~i~~v--~~lP~t~~GKv~r~~l~~ 538 (549)
...+.++++++|+++|+.++ .|..|.++ ++||+|++||++|+..++
T Consensus 390 ~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 390 SVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred cchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEecc
Confidence 12345789999999998764 88888887 599999999999986554
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=406.30 Aligned_cols=329 Identities=24% Similarity=0.269 Sum_probs=274.5
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhc---cCCCCCCCcEEEEecCh-hhHHHHHHHHHHhhhccEEEE
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV 264 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~g~~~~~ 264 (549)
..++++++++|||||||.||+|.++|+++......... .+ +..++|+++..+|+ +|..++...+.++..|++++.
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 35678999999999999999999999998776543322 33 46788999999998 678777778889999999998
Q ss_pred ecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCC--CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCc
Q 008895 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342 (549)
Q Consensus 265 ~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~ 342 (549)
.+.++++.+++.|+++++|+++++|+++..|++.....+.+ ++++|.+++||+++++++.+++.+.+ ++.+++.||+
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 244 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL 244 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence 88889999999999999999999999999998754333333 47999999999999999999999988 8999999999
Q ss_pred ccc-ccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeee
Q 008895 343 TES-TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMR 421 (549)
Q Consensus 343 tE~-~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~ 421 (549)
||+ +...+.... . .....+.+.+++.++|+|++++++++.|+.|||+|+|. +...| +++||+
T Consensus 245 TE~~g~~~~~~~~-~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~~~y~ 307 (437)
T 2y27_A 245 SEVMGPGVASECV-E---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PIIRYR 307 (437)
T ss_dssp TTTTEEEEEECCT-T---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CCCSEE
T ss_pred hhhcCCeeEEecC-C---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hhheee
Confidence 997 432332111 1 11135667789999999988899999999999999983 22334 689999
Q ss_pred cCceEEEec-CCeE-----EEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCC-
Q 008895 422 TGDLCYIDE-DGFL-----FIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSS- 494 (549)
Q Consensus 422 TGD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~- 494 (549)
|||+|++++ +|++ ++.||+||+||++|++|+|.+||++|.++|+|.+++|+++++...++.++++|++.++..
T Consensus 308 TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~ 387 (437)
T 2y27_A 308 TRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAP 387 (437)
T ss_dssp EEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTT
T ss_pred cCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccc
Confidence 999999998 6985 899999999999999999999999999999999999998877666788999998876543
Q ss_pred --CCHHHHHHHHHhcCCCC-CcccEEEEe--CccCCCCCCcccHHHHH
Q 008895 495 --LNEAEIMEFVARQVSPY-KKIRRVAFI--NAIPKSAAGKILRMELR 537 (549)
Q Consensus 495 --~~~~~i~~~l~~~l~~~-~~p~~i~~v--~~lP~t~~GKv~r~~l~ 537 (549)
.+.++++++|+++|+.+ ..|..|.++ ++||+|+ ||++|+..+
T Consensus 388 ~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~~ 434 (437)
T 2y27_A 388 DTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVVDK 434 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEEEC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEEec
Confidence 34578999999999988 588888888 5999999 999997543
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=265.41 Aligned_cols=239 Identities=18% Similarity=0.134 Sum_probs=183.0
Q ss_pred cCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCCcEEEEecCh-hhHHHHHHHHHHhhhccEEEEe
Q 008895 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVVM 265 (549)
Q Consensus 189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~g~~~~~~ 265 (549)
..++++++++|||||||.||+|.++|+++..........+ .+..+++++++.+|+ +|..|+...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678889999999999999999999999998887543322 246788999999999 99999987787888998 6666
Q ss_pred cCcCHH-----------------------HHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHH
Q 008895 266 QRFDLK-----------------------MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKD 322 (549)
Q Consensus 266 ~~~~~~-----------------------~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~ 322 (549)
..+++. .+++.|+++++|+++++|+++..|++........++++|.+++|||+++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~ 246 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLD 246 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHH
Confidence 666777 888899999999999999999999876432223468999999999999999
Q ss_pred HHHHHH-HhCCCCcEEcccCccccccceecccCcCCCCCCCccccc------cCCcEEEEEcCCCCCcCCCCCcceEEEe
Q 008895 323 TIMAFA-SKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL------SAGLEAKIVDPETGDSLPPGKEGELSIR 395 (549)
Q Consensus 323 ~~~~~~-~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 395 (549)
+++++. +.||++++++.||+||++.++..+.. .++|++ .++++++|+|++++++++.|+.|||+|+
T Consensus 247 ~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt 319 (369)
T 3hgu_A 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLI-------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT 319 (369)
T ss_dssp HHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEE
T ss_pred HHHHHHHHhCCCcEEEcccCchhhhcceecccc-------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEE
Confidence 999999 99989999999999999876543211 147888 9999999999879999999999999998
Q ss_pred cCCcccccCCCccccccccCCCCeeecCceEEEecC--C-------eEEEEcccCCeeeeCcE
Q 008895 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED--G-------FLFIVDRLKDLIKYKGY 449 (549)
Q Consensus 396 g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~~~~~GR~~d~i~~~G~ 449 (549)
+.. ...+ -.+|+|||++.+.+. | .+..++|.++..++.|.
T Consensus 320 ~l~------------~~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 320 HLS------------PWAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEE------------TTEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EcC------------cccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 743 1111 235899999988543 2 35667788888888774
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-16 Score=123.75 Aligned_cols=101 Identities=26% Similarity=0.371 Sum_probs=75.2
Q ss_pred cccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCC-Cc
Q 008895 438 DRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNE---AEIMEFVARQVSPY-KK 513 (549)
Q Consensus 438 GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~~l~~~l~~~-~~ 513 (549)
.|.||+|+++|+||+|.+||++|.+||+|.+++++++++...++.+.++|+..++...+. +++.+.+++.+..+ ..
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 499999999999999999999999999999999999999888899999999877655443 34445555444322 23
Q ss_pred ccEEEEe--CccCCCCCCcccHH-HHHcc
Q 008895 514 IRRVAFI--NAIPKSAAGKILRM-ELRKV 539 (549)
Q Consensus 514 p~~i~~v--~~lP~t~~GKv~r~-~l~~~ 539 (549)
+..+.++ ++||+| +||++|- .+|+.
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~Rv~D~R~~ 108 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVRVKDLRKT 108 (109)
T ss_dssp CCEEEEECTTCSCCC----CCCEEECSCC
T ss_pred ccceEEEcCCeecCC-CCCcchhhhhccC
Confidence 3356666 589998 7999883 24544
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-09 Score=109.55 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=87.7
Q ss_pred CCC---ceEEEEecCCCCHHHHHHHHHhCCCCcEE-cccCccccccceecccCcCCCCCCCcccc-ccCC-cEEEEEcCC
Q 008895 306 LSS---LETVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAG-LEAKIVDPE 379 (549)
Q Consensus 306 l~~---lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~ 379 (549)
+++ +..++.||- ..-+..++..+++.++. ..|++||+ .+++... ..+ .+...+. .+++ +-.+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~--p~~-~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLD--PLC-KPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSC--TTS-CGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccC--CCC-CcccCceeecCCcEEEEEEecc
Confidence 567 444455663 44445555655677777 89999995 3333211 111 1111122 2233 344555422
Q ss_pred C--------CCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec----CCeEEEEcccCCeeeeC
Q 008895 380 T--------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRLKDLIKYK 447 (549)
Q Consensus 380 ~--------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~i~~~ 447 (549)
+ ...+..|+.+||++++.+ |.| .|++||++++.. ...+.+.||.++++.+.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 2 135668999999998753 322 299999999975 35799999999999999
Q ss_pred cEeeChHHHHHHHHcC
Q 008895 448 GYQVAPAELEHLLLSH 463 (549)
Q Consensus 448 G~~v~~~~IE~~l~~~ 463 (549)
|++++..+||++|.+.
T Consensus 432 Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 432 SDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SCCEEHHHHHHHHHHC
T ss_pred eeECCHHHHHHHHHHH
Confidence 9999999999999753
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.1e-09 Score=106.74 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=92.2
Q ss_pred CCCceE---EEEecCCCCHHHHHHHHHhCCCCcEE-cccCccccccceecccCcCCCCCCCccc-cccCC-cEEEEEcCC
Q 008895 306 LSSLET---VACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTG-RLSAG-LEAKIVDPE 379 (549)
Q Consensus 306 l~~lr~---v~~~Ge~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~G-~~~~~-~~~~i~d~~ 379 (549)
++++|. ++.||- ..-+..++..+++.++. ..|++||+ .+++... ..+ .++..+ ..+|+ .-.+.++.+
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~--p~~-~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLN--PMS-KPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSC--TTS-CGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccce-eeeeecC--CCC-CcccCceeecCCcEEEEEEecc
Confidence 577554 444553 33345555555677777 89999995 3333321 111 111111 12233 334455322
Q ss_pred C---------------CCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEec----CCeEEEEccc
Q 008895 380 T---------------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDE----DGFLFIVDRL 440 (549)
Q Consensus 380 ~---------------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~ 440 (549)
+ ...+..|+.+||+|+... |.|+ |++||++++.. ...+.+.||.
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~ 436 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRK 436 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEec
Confidence 2 136778999999997653 4433 99999999874 4689999999
Q ss_pred CCeeeeCcEeeChHHHHHHHHc------CCC--cceEEEEe
Q 008895 441 KDLIKYKGYQVAPAELEHLLLS------HRE--VADAAVIP 473 (549)
Q Consensus 441 ~d~i~~~G~~v~~~~IE~~l~~------~~~--v~~~~vv~ 473 (549)
++++++.|+++++.+||++|.+ ..+ |.+..+..
T Consensus 437 ~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~ 477 (609)
T 4b2g_A 437 NVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA 477 (609)
T ss_dssp TCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred CCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence 9999999999999999999873 223 56666653
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=103.74 Aligned_cols=161 Identities=14% Similarity=0.050 Sum_probs=98.2
Q ss_pred CCCceEE--EEecCCCCHHHHHHHHHhCCCCcEE-cccCccccccceecccCcCCCCCCCcc-ccccCC-cEEEEEcCCC
Q 008895 306 LSSLETV--ACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGST-GRLSAG-LEAKIVDPET 380 (549)
Q Consensus 306 l~~lr~v--~~~Ge~l~~~~~~~~~~~~~~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~~~~-G~~~~~-~~~~i~d~~~ 380 (549)
+++++.| +.+|. + ..-+..++..+++.++. ..|++||+ .+++... ..+ .++.. ...+|+ .-.+.+..++
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~--p~~-~~~~~~~~L~p~~~ffEFiP~~~ 374 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVT--PRL-SPEEATFAVIPNLGYFEFLPVSE 374 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCC--TTS-CTTTCCEEECTTSCEEEEEEC--
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecC--CCC-CccccceeecCCcEEEEEEeccc
Confidence 5777643 34442 2 33335555555677777 99999995 3333321 111 11111 222333 3334443221
Q ss_pred ----------CCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecCceEEEecC----CeEEEEcccCCeeee
Q 008895 381 ----------GDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDED----GFLFIVDRLKDLIKY 446 (549)
Q Consensus 381 ----------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~~~~~GR~~d~i~~ 446 (549)
...+..|+.+||+++..+ |.| .|++||++++..- ..+.+.||.++++.+
T Consensus 375 ~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~ 437 (581)
T 4epl_A 375 TGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSI 437 (581)
T ss_dssp -----CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCS
T ss_pred ccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEe
Confidence 146778999999998753 322 2999999998642 579999999999999
Q ss_pred CcEeeChHHHHHHHHc------CC--CcceEEEEeecCCCCCceeEEEEEeC
Q 008895 447 KGYQVAPAELEHLLLS------HR--EVADAAVIPYPDEEAGQMPMAFVVRQ 490 (549)
Q Consensus 447 ~G~~v~~~~IE~~l~~------~~--~v~~~~vv~~~~~~~~~~~~~~v~~~ 490 (549)
.|++++..+||.++.+ .. .|.+..++.......+ .-+.|+...
T Consensus 438 ~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~wE~~ 488 (581)
T 4epl_A 438 NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFWEIS 488 (581)
T ss_dssp SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEEEES
T ss_pred eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEEEEEeec
Confidence 9999999999999864 22 3667776653322222 334455654
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.89 Score=45.18 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=76.0
Q ss_pred CCCcEEEE---CCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCC--hHHHHHHHHHHcCCeEccCC
Q 008895 56 DDTVALIN---SVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~~---~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~--~~~v~~la~~~~G~~~v~l~ 126 (549)
++.++++. +.+| ..+|.+.+...+..+++.+.. .++.++|++...++.+. ..+..+++++..|+..++++
T Consensus 89 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 89 QDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp GGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred hhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 55666543 2333 358999999888888888877 89999999998887543 33445688899999998876
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
+ .+.+.+...+++.++.+++..+.....+
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 196 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSI 196 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHHHHHH
Confidence 5 4788999999999999999887766554
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=90.72 E-value=1.1 Score=44.74 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCCcEEE---ECCCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCC--hHHHHHHHHHHcCCeEccCC
Q 008895 56 DDTVALI---NSVTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPAN 126 (549)
Q Consensus 56 p~~~a~~---~~~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~--~~~v~~la~~~~G~~~v~l~ 126 (549)
++.++++ .+.+| ..+|.+.+...+..+++.+.. .|+.++|++...++-+. ..+...++++..|+..++++
T Consensus 91 ~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 91 REQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp GGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred hhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 5555544 23344 358999999888888888877 89999999998887643 33455688889999998877
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 127 PVNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 127 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
+. +.+.+...+++.++.++...+.....+
T Consensus 170 ~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l 198 (443)
T 2y4o_A 170 GG-QTEKQVQLIRDFEPKIILVTPSYMLNL 198 (443)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred CC-CHHHHHHHHHHhCCcEEEECHHHHHHH
Confidence 54 788999999999999999887765544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=1.6 Score=43.23 Aligned_cols=98 Identities=19% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCcEEEEC---CCC----ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCC--ChHHHHHHHHHHcCCeEccCCC
Q 008895 57 DTVALINS---VTG----LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYFSLLSLGVIISPANP 127 (549)
Q Consensus 57 ~~~a~~~~---~~~----~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~--~~~~v~~la~~~~G~~~v~l~~ 127 (549)
+.+|++.. .+| ..+|.+.+...+..+++.+.. .++.++|++....+-+ ...+..+++++..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 66676543 233 358999999989888888887 8999999999888754 3344567888999999988765
Q ss_pred CCCHHHHHHHHhhcCCeEEEEcCccHHHH
Q 008895 128 VNTESEISRQIQLSNPVIAFATSSVVHKL 156 (549)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 156 (549)
. +++.+...+++.++.+++..+.....+
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~~~~~l 192 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPSYAIRL 192 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHHHHHHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHHHHHHH
Confidence 4 778899999999999999877766554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 549 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-114 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-107 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-102 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-101 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 6e-81 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 4e-80 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 4e-72 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 351 bits (902), Expect = e-114
Identities = 106/534 (19%), Positives = 202/534 (37%), Gaps = 49/534 (9%)
Query: 54 RDDDTVALI----NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109
+ D A+I ++ +S+ E R A+ L ++ + K D + E
Sbjct: 84 ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDL-GIKKGDVVAIYMPMVPEAA 142
Query: 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSP 169
+ + +G + S + ++ I S+ + V + + + D+
Sbjct: 143 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDAL 202
Query: 170 EFDSMT---------------------------MSWNSKHELDRAKVCQSDVAAIMYSSG 202
+ ++T + + E + D I+Y+SG
Sbjct: 203 KNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSG 262
Query: 203 TTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETA 262
+TG+ KGV+ T A++F + T + G +
Sbjct: 263 STGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAT 322
Query: 263 VVM-----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLSSLETVACG 315
+M M + V++ +V P + A+ G + +G D SSL +
Sbjct: 323 TLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSV 382
Query: 316 AAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA 373
P+ + + K K +V + TE+ + + + GS R G++
Sbjct: 383 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQP 442
Query: 374 KIVDPETGDSLPPGKEGELSIRG--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYID 429
+VD E G EG L I P + G+ E T +GD D
Sbjct: 443 ALVDNE-GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD 501
Query: 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVR 489
EDG+ +I R+ D++ G+++ AE+E L++H ++A+AAV+ P GQ A+V
Sbjct: 502 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTL 561
Query: 490 QPHSSLNE---AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
+ AE+ +V +++ P + + +++PK+ +GKI+R LRK+A
Sbjct: 562 NHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 615
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 330 bits (847), Expect = e-107
Identities = 173/537 (32%), Positives = 282/537 (52%), Gaps = 29/537 (5%)
Query: 27 PPIDLPPEDAPISAVDYVSSLR-ATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASY 85
P P ED + + R A +P T+A ++ + ++++E+ + LA
Sbjct: 8 PAPFYPLEDGTAGEQLHKAMKRYALVP----GTIAFTDAHIEVNITYAEYFEMSVRLAEA 63
Query: 86 LQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145
++ L+ N V S NS++ + L +GV ++PAN + E E+ + +S P +
Sbjct: 64 MKRY-GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 122
Query: 146 AFATSSVVHKLAKLK------HRTILIDSPEFDSMTMSW------------NSKHELDRA 187
F + + K+ ++ + I++DS S N + +
Sbjct: 123 VFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPES 182
Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFH 245
+A IM SSG+TG KGV L HR + A + + +L +P+ H
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242
Query: 246 IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
+G+F V+M RF+ ++ L++++++++ A + P + +K D YD
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD 302
Query: 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365
LS+L +A G APL K+ A A +F + Q YGLTE+T+ + + P+ + G+ G
Sbjct: 303 LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI--LITPEGDDKPGAVG 360
Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDL 425
++ EAK+VD +TG +L + GEL +RGP IM GYV PE T+A + DGW+ +GD+
Sbjct: 361 KVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDI 420
Query: 426 CYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMA 485
Y DED FIVDRLK LIKYKGYQVAPAELE +LL H + DA V PD++AG++P A
Sbjct: 421 AYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 480
Query: 486 FVVRQPHSSLNEAEIMEFVARQVSPYKKIR-RVAFINAIPKSAAGKILRMELRKVAV 541
VV + ++ E EI+++VA QV+ KK+R V F++ +PK GK+ ++R++ +
Sbjct: 481 VVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILI 537
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 319 bits (817), Expect = e-102
Identities = 109/542 (20%), Positives = 209/542 (38%), Gaps = 55/542 (10%)
Query: 54 RDDDTVALI----NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109
+ + A+I G +++ E +A L + K DT V E
Sbjct: 71 KTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI 130
Query: 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSP 169
I ++ +G I S + + + +I + + T ++ + I+ D+
Sbjct: 131 ITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL 190
Query: 170 E--------------------------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGT 203
D T K V D ++Y+SG+
Sbjct: 191 RETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGS 250
Query: 204 TGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV 263
TG KGV + + + V I G + L A
Sbjct: 251 TGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCAT 310
Query: 264 VM-----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGA 316
++ + ++E +VT V P + + + G + + + L SL +
Sbjct: 311 LVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVG 370
Query: 317 APLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTV-GPDECRRWGSTGRLSAGLEA 373
P+ + ++ K K + +V Y TES + + + G + GS G++A
Sbjct: 371 EPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDA 430
Query: 374 KIVDPETGDSLPPGK-EGELSIRG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYI 428
++DP TG+ L EG L+++ P+ + + T L G+ TGD
Sbjct: 431 VVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAK 490
Query: 429 DEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVV 488
D+DG+++I+ R+ D++ G++++ AE+E ++ VA+ AV+ + D+ GQ AFVV
Sbjct: 491 DKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVV 550
Query: 489 RQPHSSLNEA----------EIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538
+ SS + A ++ V + + P+ + + ++ +PK+ +GKI+R LRK
Sbjct: 551 LKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRK 610
Query: 539 VA 540
+
Sbjct: 611 IL 612
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 312 bits (801), Expect = e-101
Identities = 124/503 (24%), Positives = 218/503 (43%), Gaps = 24/503 (4%)
Query: 57 DTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114
+ TG R +++E +R L L+ + + D L N YF+
Sbjct: 26 RKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL-GVGVGDRVATLGFNHFRHLEAYFA 84
Query: 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-------KLAKLKHRTILID 167
+ +G ++ ANP + EI+ + + + +++ +L ++H ++ +
Sbjct: 85 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDE 144
Query: 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA-AVASSFA 226
+ E D +V + + Y++GTTG KGV+ +HR L ++A+S
Sbjct: 145 KAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV 204
Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV-VMQRFDLKMMLKAVEEFRVTHA 285
V+L +P FH+ + A + V R D +++ + VT
Sbjct: 205 DGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT 264
Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
A P + +A++ + G+ L +L + G + + I F +V Q YGLTE+
Sbjct: 265 AGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVR--QGYGLTET 322
Query: 346 TAGVFRTVGPDEC---------RRWGSTGRLSAGLEAKIVDPETGDSLPPGKE-GELSIR 395
+ V + TG + ++ D E GK GE+ ++
Sbjct: 323 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLK 382
Query: 396 GPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAE 455
GP I GY G E T + L PDG+ RTGD+ DE+G++ I DRLKDLIK G ++ +
Sbjct: 383 GPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVD 442
Query: 456 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIR 515
LE+ L+ H +V +AAV+ P + + P+A VV + E + + ++
Sbjct: 443 LENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPD 502
Query: 516 RVAFINAIPKSAAGKILRMELRK 538
F IP+++AGK L+ LR+
Sbjct: 503 AYVFAEEIPRTSAGKFLKRALRE 525
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 260 bits (665), Expect = 6e-81
Identities = 97/489 (19%), Positives = 191/489 (39%), Gaps = 26/489 (5%)
Query: 57 DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
+ VA++ ++++ E + N LA + K+ ++ SI++ I ++L
Sbjct: 38 NNVAIVCE--NEQLTYHELNVKANQLARIFIEKG-IGKDTLVGIMMEKSIDLFIGILAVL 94
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
G P + + I + S + +VH + ++ + F+ T+
Sbjct: 95 KAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEI---FEEDTI 151
Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAV 236
L +D+A ++Y+SGTTG KG ML H+ ++ S +
Sbjct: 152 KIREGTNLH-VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRI 210
Query: 237 MLFTMPYFH--IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
F F ++ +F A + + D + + + +T + P VV
Sbjct: 211 GQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH 270
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
+ D + S++T+ + + + KV + AYG TE+T V
Sbjct: 271 L------DPERILSIQTLITAGSATSPSLVNKW---KEKVTYINAYGPTETTICATTWVA 321
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATL 414
E + E G+ GEL I G + +GY PE+TS
Sbjct: 322 TKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKF 381
Query: 415 LP------DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468
+ + +TGD DG + + R+ + +K +G++V E+E +LL H +++
Sbjct: 382 VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 441
Query: 469 AAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAA 528
AV + D + A+ V + H + ++ +F + ++ Y ++ +P ++
Sbjct: 442 TAVSVHKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSN 499
Query: 529 GKILRMELR 537
GKI R +L
Sbjct: 500 GKIDRKQLP 508
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 259 bits (661), Expect = 4e-80
Identities = 111/525 (21%), Positives = 202/525 (38%), Gaps = 32/525 (6%)
Query: 42 DYVSSLRATLPWRDD--------------DTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
+ + R W + D +A+ S+ E R + LA+ Q
Sbjct: 11 ELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQ 68
Query: 88 NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
+ + + D V N E + F+L LG + A P + SEI+ + +
Sbjct: 69 KL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127
Query: 148 ATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKH----------ELDRAKVCQSDVAAI 197
+ + R + P ++ ++ ++ + +V SDVA +
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187
Query: 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAA 257
S G+TG K + TH + ++ S S + +
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVL 247
Query: 258 LM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA 316
V+ +E +VT A+ PP+ + S+ DLSSL+ + G
Sbjct: 248 YAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG 307
Query: 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIV 376
A + + F + + + E + G+ + + V
Sbjct: 308 AKFSAEAARRVKAVFGCTLQQVFGMAEGLVN--YTRLDDPEEIIVNTQGKPMSPYDESRV 365
Query: 377 DPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFI 436
+ + PG+ G L RGP ++GY E +A+ DG+ RTGD+ + DG++ +
Sbjct: 366 WDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425
Query: 437 VDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLN 496
R KD I G +VA E+E+ LL+H V DAA++ PD+ G+ F++ + +
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-PK 484
Query: 497 EAEIMEFVA-RQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540
AE+ F+ R ++ YK RV F+ + P++ GK+ + LR+
Sbjct: 485 AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAI 529
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 236 bits (603), Expect = 4e-72
Identities = 113/495 (22%), Positives = 204/495 (41%), Gaps = 18/495 (3%)
Query: 54 RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
R D AL GLR++ +E R ++A+ L L V++ NS ++ I
Sbjct: 14 RAPDHCALAVPARGLRLTHAELRARVEAVAARLHADG-LRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP--VIAFATSSVVHKLAKLKHRTILIDSPEF 171
+L LG + + NP +E++ I+ + V + + +I +
Sbjct: 73 ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDL 132
Query: 172 DSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPK 230
++ ++ + + A I Y+SGTTG K ++ R + V S +
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF---DLKMMLKAVEEFRVTHAAV 287
V+L MP +H+ G F AA ++ V+ + L E+ A
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
T +A + + L SL V A + + P V YG TE+
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMN 311
Query: 348 GVFRTVGPDECRRWGSTGRLSAGLEAKIVDP--ETGDSLPPGKEGEL-SIRGPTIMKGYV 404
++ + G+ E +IV + + G+EGEL + GY+
Sbjct: 312 SLY-----MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYL 366
Query: 405 GEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHR 464
+P+ T+ L DGW RT D+ +G + I+ R+ D+I G + P+E+E +L +
Sbjct: 367 NQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAP 425
Query: 465 EVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFV-ARQVSPYKKIRRVAFINAI 523
V + VI D+ GQ A VV + +L+ + F + +++ +K+ +R ++ +
Sbjct: 426 GVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQL 485
Query: 524 PKSAAGKILRMELRK 538
PK+A K+LR +L +
Sbjct: 486 PKNALNKVLRRQLVQ 500
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 549 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.4e-79 Score=653.93 Aligned_cols=500 Identities=21% Similarity=0.279 Sum_probs=420.7
Q ss_pred CCCCHHHHHh-hcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHH
Q 008895 36 APISAVDYVS-SLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110 (549)
Q Consensus 36 ~~~~~~~~~~-~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v 110 (549)
..+|+.+.+. ++++++ ||++|++.. .+.+++||+||.++++++|++|++ +|+++||+|+++++|++++++
T Consensus 69 ~~~N~~~n~ldrh~~~~----~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~-~Gv~~Gd~V~i~~~n~~e~iv 143 (643)
T d1pg4a_ 69 GTLNLAANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAV 143 (643)
T ss_dssp CEECHHHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHH
T ss_pred ChhhHHHHHHHHHHHhC----CCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecccchHHHH
Confidence 4478877655 556677 999999853 223689999999999999999999 899999999999999999999
Q ss_pred HHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH-------------HHhcC---CC-eEEEecCCc---
Q 008895 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-------------KLAKL---KH-RTILIDSPE--- 170 (549)
Q Consensus 111 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-------------~~~~~---~~-~~~~~~~~~--- 170 (549)
++|||+++|++++|+++.++.+++.+++++++++++|+++.... .+... .. .++.+....
T Consensus 144 ~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 223 (643)
T d1pg4a_ 144 AMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 223 (643)
T ss_dssp HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC
T ss_pred HHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc
Confidence 99999999999999999999999999999999999999764321 11111 11 233333211
Q ss_pred ---------hhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEec
Q 008895 171 ---------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM 241 (549)
Q Consensus 171 ---------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (549)
+....... ..........++++++|+|||||||.||||+++|++++..............++|++++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~ 301 (643)
T d1pg4a_ 224 DWQEGRDLWWRDLIEKA--SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTA 301 (643)
T ss_dssp CCCBTTEEEHHHHHTTS--CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred ccccccchhhhhhhccc--CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeC
Confidence 11111111 1122233456789999999999999999999999997766554443333578899999999
Q ss_pred ChhhHHHHH-HHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCC--CCCCCCCCceEEEE
Q 008895 242 PYFHIYGLF-FCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVAC 314 (549)
Q Consensus 242 pl~~~~g~~-~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~ 314 (549)
|++|++|+. .++.++..|+++++.+. +++..+++.++++++|+++++|+++..|++... ....++++||.+++
T Consensus 302 p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~ 381 (643)
T d1pg4a_ 302 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGS 381 (643)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEE
T ss_pred ChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEE
Confidence 999999984 56788999999998753 478999999999999999999999999987653 34567899999999
Q ss_pred ecCCCCHHHHHHHHHhCC--CCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceE
Q 008895 315 GAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392 (549)
Q Consensus 315 ~Ge~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel 392 (549)
+|+++++++++++.+.++ ++.+.+.||+||+|..++...........+++|+|++|++++|+| +++++++.|+.|||
T Consensus 382 ~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~Gel 460 (643)
T d1pg4a_ 382 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNL 460 (643)
T ss_dssp ESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEE
T ss_pred EeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceEEE
Confidence 999999999999999984 578999999999988766543334445678999999999999999 67899999999999
Q ss_pred EEec--CCcccccCCCccccccccC--CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcce
Q 008895 393 SIRG--PTIMKGYVGEPEVTSATLL--PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVAD 468 (549)
Q Consensus 393 ~v~g--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~ 468 (549)
+|+| |+++.||+++++.+...+. .+|||+|||+|++|++|++++.||+||+||++|++|+|.|||++|.+||+|.+
T Consensus 461 ~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~e 540 (643)
T d1pg4a_ 461 VITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAE 540 (643)
T ss_dssp EECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEE
T ss_pred EEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcce
Confidence 9999 5788999999987776653 37899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCceeEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 469 AAVIPYPDEEAGQMPMAFVVRQPHSSLNE---AEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 469 ~~vv~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
|+|++++++..++.+++||+++++...+. ++|+++++++|+++++|+.|+++++||+|++|||+|++||+++...
T Consensus 541 aaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 541 AAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 618 (643)
T ss_dssp EEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence 99999999888999999999998776665 4899999999999999999999999999999999999999998654
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=7.3e-78 Score=632.96 Aligned_cols=513 Identities=33% Similarity=0.538 Sum_probs=428.8
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEc
Q 008895 23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLS 102 (549)
Q Consensus 23 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~ 102 (549)
.+|.+..|+|. .++.++|.+.+++++ ..|+++|+.+...++++||+||+++++++|++|++ +|+++||+|++++
T Consensus 6 ~~p~p~~p~~~----~t~~~~l~~~~~~~~-~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~-~Gi~~Gd~Vai~~ 79 (541)
T d1lcia_ 6 KGPAPFYPLED----GTAGEQLHKAMKRYA-LVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVVCS 79 (541)
T ss_dssp ECCCCSSCCCS----SCHHHHHHHHHHHHH-TSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEEC
T ss_pred cCCCCCCCCCC----CCHHHHHHHHHHhhC-CCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHH-cCcCCCCEEEEEe
Confidence 34445455554 799999999988774 23888999998778899999999999999999998 8999999999999
Q ss_pred CCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhc----C--CCeEEEecCCc------
Q 008895 103 TNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L--KHRTILIDSPE------ 170 (549)
Q Consensus 103 ~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~--~~~~~~~~~~~------ 170 (549)
+|++++++++|||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.+ . ...++.++...
T Consensus 80 ~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (541)
T d1lcia_ 80 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ 159 (541)
T ss_dssp SSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBE
T ss_pred CCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccc
Confidence 99999999999999999999999999999999999999999999999987765542 1 12233333211
Q ss_pred -hhhhhccc-----CCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC--CCCCCCcEEEEecC
Q 008895 171 -FDSMTMSW-----NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMP 242 (549)
Q Consensus 171 -~~~~~~~~-----~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~~~~~~~p 242 (549)
+....... ............++++++++|||||||.||+|+++|++++.......... ....+.++++..+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p 239 (541)
T d1lcia_ 160 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 239 (541)
T ss_dssp EHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred hhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence 11111110 00111122334568899999999999999999999999988777655544 23567899999999
Q ss_pred hhhHHHHHHHHHHhhhccEEEEecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHH
Q 008895 243 YFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKD 322 (549)
Q Consensus 243 l~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~ 322 (549)
++|.+++...+..+..++..+.....+.......+..+++|.++++|..+..++.........+++++.+++||+++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~ 319 (541)
T d1lcia_ 240 FHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 319 (541)
T ss_dssp TTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHH
T ss_pred ccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccc
Confidence 99999998888888899999988888999999999999999999999999999998887778899999999999999999
Q ss_pred HHHHHHHhCCCCcEEcccCccccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccc
Q 008895 323 TIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402 (549)
Q Consensus 323 ~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~g 402 (549)
..+++.+.++...+.+.||+||++..++.. .......+++|+|+||++++|+|++++++++.|+.|||+|+|++++.|
T Consensus 320 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~--~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~g 397 (541)
T d1lcia_ 320 VGEAVAKRFHLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 397 (541)
T ss_dssp HHHHHHHHTTCSCCBCEECCGGGSSCSEEC--CCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSE
T ss_pred cccccccccCCceeeecCCccccCceEEec--CcccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCe
Confidence 999999999777889999999998877663 334456789999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCce
Q 008895 403 YVGEPEVTSATLLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQM 482 (549)
Q Consensus 403 y~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~ 482 (549)
|+++++.+...+..++||+|||+|+++++|.+++.||.||+||++|++|+|.+||++|.++|+|.+|+|++++++..++.
T Consensus 398 Y~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~ 477 (541)
T d1lcia_ 398 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGEL 477 (541)
T ss_dssp ETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEE
T ss_pred eCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEE
Confidence 99999988888888999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred eEEEEEeCCCCCCCHHHHHHHHHhcCCCCC-cccEEEEeCccCCCCCCcccHHHHHcccCcC
Q 008895 483 PMAFVVRQPHSSLNEAEIMEFVARQVSPYK-KIRRVAFINAIPKSAAGKILRMELRKVAVPS 543 (549)
Q Consensus 483 ~~~~v~~~~~~~~~~~~i~~~l~~~l~~~~-~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~~ 543 (549)
++++|+++++...+.++|+++++++|.+++ .|..|+++++||+|++|||+|++||+++++.
T Consensus 478 ~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 478 PAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 539 (541)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHh
Confidence 999999988888899999999999998875 6889999999999999999999999998764
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-76 Score=630.02 Aligned_cols=504 Identities=21% Similarity=0.305 Sum_probs=410.4
Q ss_pred CCCHHH-HHhhcccCCCCCCCCCcEEEEC----CCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHH
Q 008895 37 PISAVD-YVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL 111 (549)
Q Consensus 37 ~~~~~~-~~~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~ 111 (549)
.+|+.+ ++.++++++ ||++|++.. .+++++||+||.++++++|++|+..+|+++||+|+++++|+++++++
T Consensus 57 ~lN~~~n~ldr~a~~~----pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~ 132 (640)
T d1ry2a_ 57 QLNACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIIT 132 (640)
T ss_dssp EECHHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHH
T ss_pred chhHHHHHHHHHHhhC----CCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHH
Confidence 367754 555677888 999999853 23478999999999999999997438999999999999999999999
Q ss_pred HHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHH---------HHh----cC-CCe-EEEecCCc------
Q 008895 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLA----KL-KHR-TILIDSPE------ 170 (549)
Q Consensus 112 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~----~~-~~~-~~~~~~~~------ 170 (549)
+|||+++|++++|+++.++.+++.++++++++++++++..... .+. .. ... ...+....
T Consensus 133 ~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (640)
T d1ry2a_ 133 LLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF 212 (640)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC
T ss_pred HHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccc
Confidence 9999999999999999999999999999999999999864321 111 00 111 11111110
Q ss_pred -----hhhhhcccCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhh
Q 008895 171 -----FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFH 245 (549)
Q Consensus 171 -----~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 245 (549)
....................++++++|+|||||||.||||+++|++++.+............++|++++.+|++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~ 292 (640)
T d1ry2a_ 213 HAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGW 292 (640)
T ss_dssp CSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTS
T ss_pred cccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhh
Confidence 000000001111122233456889999999999999999999999988776655544335788999999999999
Q ss_pred HHHH-HHHHHHhhhccEEEEecC----cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCC--CCCCCCCceEEEEecCC
Q 008895 246 IYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAP 318 (549)
Q Consensus 246 ~~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~~Ge~ 318 (549)
.+|+ +.++.++..|+++++... +++..+++.|+++++|+++++|+++..|.+.... ...++++||.+++||++
T Consensus 293 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~ 372 (640)
T d1ry2a_ 293 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEP 372 (640)
T ss_dssp HHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSC
T ss_pred hhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEeccc
Confidence 9997 567788999998888764 3789999999999999999999999999876543 45678999999999999
Q ss_pred CCHHHHHHHHHhCC--CCcEEcccCccccccceecccCc-CCCCCCCccccccCCcEEEEEcCCCCCcC-CCCCcceEEE
Q 008895 319 LGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSL-PPGKEGELSI 394 (549)
Q Consensus 319 l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~-~~g~~Gel~v 394 (549)
+++++.+++.+.++ ...+++.||+||++......... ......+++|+|++|++++|+|++++..+ +.+..|||++
T Consensus 373 l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i 452 (640)
T d1ry2a_ 373 IAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAV 452 (640)
T ss_dssp CCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEE
T ss_pred CcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEE
Confidence 99999999999985 35689999999998876553332 23456789999999999999997776654 4456799999
Q ss_pred ec--CCcccccCCCccccccccCC--CCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEE
Q 008895 395 RG--PTIMKGYVGEPEVTSATLLP--DGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAA 470 (549)
Q Consensus 395 ~g--~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~ 470 (549)
++ |+++.|||++++.+.+.|.. +|||+|||+|++|++|++++.||+||+||++|++|+|.+||++|.+||+|.+|+
T Consensus 453 ~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~ 532 (640)
T d1ry2a_ 453 KAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECA 532 (640)
T ss_dssp SSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEE
T ss_pred EecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEE
Confidence 98 68999999999998887743 589999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEeCCCCCCC----------HHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 471 VIPYPDEEAGQMPMAFVVRQPHSSLN----------EAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 471 vv~~~~~~~~~~~~~~v~~~~~~~~~----------~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
|++++++..++.+++||+++++...+ .+++.++++++|++|++|+.|+++++||+|++|||+|++||+++
T Consensus 533 Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~ 612 (640)
T d1ry2a_ 533 VVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKIL 612 (640)
T ss_dssp EECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSC
T ss_pred EEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHH
Confidence 99999998999999999988764322 25688899999999999999999999999999999999999999
Q ss_pred CcCC
Q 008895 541 VPSG 544 (549)
Q Consensus 541 ~~~~ 544 (549)
+...
T Consensus 613 ~~~~ 616 (640)
T d1ry2a_ 613 AGES 616 (640)
T ss_dssp C---
T ss_pred hCCc
Confidence 7643
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.9e-76 Score=616.71 Aligned_cols=498 Identities=25% Similarity=0.377 Sum_probs=388.0
Q ss_pred CCCCHHHHHhhcccCCCCCCCCCcEEEECCCC--ceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHH
Q 008895 36 APISAVDYVSSLRATLPWRDDDTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113 (549)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~l 113 (549)
.++|+.++|.+.++++ ||++|+++..++ +++||+||+++++++|++|.+ .|+++||+|+++++|++++++++|
T Consensus 9 ~~~~l~~~l~~~a~~~----pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~l 83 (534)
T d1v25a_ 9 EELNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYF 83 (534)
T ss_dssp CCCCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc----CCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHH-CCcCCCCEEEEEeCCCHHHHHHHH
Confidence 3479999999999999 999999986544 469999999999999999999 899999999999999999999999
Q ss_pred HHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcC-----CCeEEEec-CCchhhhhccc-CCCccccc
Q 008895 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRTILID-SPEFDSMTMSW-NSKHELDR 186 (549)
Q Consensus 114 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 186 (549)
||+++|++++|++|.++.+++.++++.+++++++++.......... ........ ........... ........
T Consensus 84 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (534)
T d1v25a_ 84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP 163 (534)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCC
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccccccccccccc
Confidence 9999999999999999999999999999999999998877665422 12222222 11111111100 00112223
Q ss_pred cccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccC-CCCCCCcEEEEecChhhHHHHHHHHHHhhhccEEEEe
Q 008895 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM 265 (549)
Q Consensus 187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~g~~~~~~ 265 (549)
....++++++++|||||||.||+|.++|.+++.......... ......++++..+|++|.+++...+..+..|+.++..
T Consensus 164 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~ 243 (534)
T d1v25a_ 164 VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 243 (534)
T ss_dssp CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred cccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeec
Confidence 345678899999999999999999999999987665544443 3457788999999999999997777788888877776
Q ss_pred c-CcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCccc
Q 008895 266 Q-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344 (549)
Q Consensus 266 ~-~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE 344 (549)
. .+++..+...+.++++|++.++|+++..++.........+++||.+++||++++++..+++++. +..+++.||+||
T Consensus 244 ~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te 321 (534)
T d1v25a_ 244 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTE 321 (534)
T ss_dssp TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGG
T ss_pred cccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeeccccc
Confidence 5 4799999999999999999999999999987766666778999999999999999999999876 789999999999
Q ss_pred cccceecccCcCCC---------CCCCccccccCCcEEEEEcCCCCCcCCC--CCcceEEEecCCcccccCCCccccccc
Q 008895 345 STAGVFRTVGPDEC---------RRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGYVGEPEVTSAT 413 (549)
Q Consensus 345 ~~~~~~~~~~~~~~---------~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~~ 413 (549)
++..+......... ...+++|+|++|++++|+| ++++.++. ++.|||+|+|++++.||+++++.+...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~ 400 (534)
T d1v25a_ 322 TSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA 400 (534)
T ss_dssp GSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTT
T ss_pred cccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhh
Confidence 99987764322221 1236899999999999999 56676655 789999999999999999999999999
Q ss_pred cCCCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCC
Q 008895 414 LLPDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHS 493 (549)
Q Consensus 414 ~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~ 493 (549)
|..+|||+|||+|++++||.+++.||+||+||++|++|+|.+||++|.+||+|.+++|++++++..++.++++|+++...
T Consensus 401 ~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~ 480 (534)
T d1v25a_ 401 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK 480 (534)
T ss_dssp BCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------
T ss_pred cccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999887554
Q ss_pred CCCHHHHHH-HHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 494 SLNEAEIME-FVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 494 ~~~~~~i~~-~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
. ..+++.+ .++++|++|++|+.|+++++||+|++|||+|++||++|++
T Consensus 481 ~-~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~ 529 (534)
T d1v25a_ 481 P-TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 529 (534)
T ss_dssp --------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred C-CHHHHHHHHHHhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHh
Confidence 3 3344554 5778899999999999999999999999999999999965
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.4e-72 Score=588.80 Aligned_cols=494 Identities=20% Similarity=0.250 Sum_probs=421.1
Q ss_pred CCceeccCCCCCCCCCCCCCCCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCE
Q 008895 18 ATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDT 97 (549)
Q Consensus 18 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~ 97 (549)
....|.+-..+-++|. ..|+.++|.++|+++ ||++|++++ ++++||+||.++++++|++|++ +|+++||+
T Consensus 6 ~~~~~~~~~~~~~~~~---~~tl~~l~~~~a~~~----Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~ 75 (514)
T d1amua_ 6 EQYLFAVNNTKAEYPR---DKTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTL 75 (514)
T ss_dssp HHHHHHTTCCCCCCCT---TCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCE
T ss_pred HHHHHHhcCCCCCCCC---CCcHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHH-cCcCCcCE
Confidence 3445556666666775 379999999999999 999999998 8999999999999999999999 89999999
Q ss_pred EEEEcCCCChHHHHHHHHHHcCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHHhcCCCeEEEecCCchhhhhcc
Q 008895 98 AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMS 177 (549)
Q Consensus 98 V~i~~~~~~~~~v~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (549)
|+++++|+.++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+....................
T Consensus 76 Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (514)
T d1amua_ 76 VGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIR- 154 (514)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTS-
T ss_pred EEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccccccccccccccccc-
Confidence 9999999999999999999999999999999999999999999999999999998887765433221111111111000
Q ss_pred cCCCccccccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHHHHHHHHhh
Q 008895 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAA 257 (549)
Q Consensus 178 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~ 257 (549)
..........++++++++|||||||.||+|.++|.++..........+ .....++++..+|++|.+++...+.++.
T Consensus 155 ---~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~ 230 (514)
T d1amua_ 155 ---EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALL 230 (514)
T ss_dssp ---CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHT
T ss_pred ---ccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-cccccccccceecccccccccccccccc
Confidence 101122234678899999999999999999999999999998888887 5788899999999999999988889999
Q ss_pred hccEEEEecC---cCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCC
Q 008895 258 LMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV 334 (549)
Q Consensus 258 ~g~~~~~~~~---~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~ 334 (549)
.|++.++... .+...+++.+..+.++.+..+|..... ....++.+++.++++|+++++++.+++.+ ++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~ 301 (514)
T d1amua_ 231 TGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVNKWKE---KV 301 (514)
T ss_dssp TTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHHHHTT---TS
T ss_pred ccccccccccccccchhhhhhhhhhhhcccccceeeeccc------ccccccccccEEEEecccCCHHHhhhhcc---ce
Confidence 9999988753 567888899999999999999876432 23456899999999999999999887765 57
Q ss_pred cEEcccCccccccceecccCcC-CCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccc
Q 008895 335 VLVQAYGLTESTAGVFRTVGPD-ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSAT 413 (549)
Q Consensus 335 ~l~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~ 413 (549)
.+++.||+||++.++....... .....++.|.+.++..+.+.| +++++++.|+.|||+|+|++++.||++++..+...
T Consensus 302 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~ 380 (514)
T d1amua_ 302 TYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQK 380 (514)
T ss_dssp EEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHH
T ss_pred eEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCccccccccccccccee
Confidence 8999999999998776544332 223456789999999999999 88999999999999999999999999999887776
Q ss_pred cC------CCCeeecCceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEE
Q 008895 414 LL------PDGWMRTGDLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFV 487 (549)
Q Consensus 414 ~~------~~~~~~TGD~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v 487 (549)
|. .+|||+|||+|++|++|++++.||++|+|+.+|++|+|.+||++|.+||+|.+|+|++.++...++.++++|
T Consensus 381 ~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v 460 (514)
T d1amua_ 381 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYF 460 (514)
T ss_dssp EEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEE
T ss_pred eEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEE
Confidence 63 368999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCCCCcccEEEEeCccCCCCCCcccHHHHHc
Q 008895 488 VRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRK 538 (549)
Q Consensus 488 ~~~~~~~~~~~~i~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~ 538 (549)
+++++ .+.++|+++++++|+.|++|..|+++++||+|++|||+|++||+
T Consensus 461 ~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 461 VSEKH--IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp EESSC--CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred EcCCC--CCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 98754 57899999999999999999999999999999999999999998
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3.1e-71 Score=581.65 Aligned_cols=492 Identities=25% Similarity=0.343 Sum_probs=420.4
Q ss_pred CCHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHH
Q 008895 38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117 (549)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~ 117 (549)
.|++++|.++|+++ ||++|+++. ++++||+||+++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 25 ~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~el~~~v~~~A~~L~~-~Gv~~gd~V~i~~~n~~~~~v~~lA~~~ 97 (536)
T d1mdba_ 25 ETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (536)
T ss_dssp CCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC----CCCeEEEEC--CEeEcHHHHHHHHHHHHHHHHH-cCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 69999999999999 999999998 7899999999999999999998 8999999999999999999999999999
Q ss_pred cCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHHH---------h---cCCCeEEEecCCchhhhhcccCCCcccc
Q 008895 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL---------A---KLKHRTILIDSPEFDSMTMSWNSKHELD 185 (549)
Q Consensus 118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (549)
+|++++|++|.++.+++.++++.++++++++++...... . .............+..+.... .....
T Consensus 98 ~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 175 (536)
T d1mdba_ 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLH--TEPVK 175 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCC--CCCCC
T ss_pred hCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhhcc--cCCcC
Confidence 999999999999999999999999999999876432210 0 111112221222221111111 11222
Q ss_pred ccccCCCCEEEEEccCCCCCccchhhhcHHHHHHHHHHhhccCCCCCCCcEEEEecChhhHHHH--HHHHHHhhhccEEE
Q 008895 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL--FFCFRAAALMETAV 263 (549)
Q Consensus 186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~--~~~~~~l~~g~~~~ 263 (549)
.....++++++++|||||||.||+|+++|+++..++......+ ...+++++++..|++|.+++ ......+..|.+++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~ 254 (536)
T d1mdba_ 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (536)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CCccCccchHHhhhcccccccceeccccccccccccccccccc-ccccccccccccccccccceeecccccccccccccc
Confidence 3345778999999999999999999999999999998877777 57889999999999999987 34445555577888
Q ss_pred EecCcCHHHHHHHHHHhceeeeeecHHHHHHHHhCCCCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcc
Q 008895 264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343 (549)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~t 343 (549)
..+.+++..++..+.+++++.+..+|..+..+..........+++++.+++||+++++...+++.+.+ +......|+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~ 333 (536)
T d1mdba_ 255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMA 333 (536)
T ss_dssp ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECT
T ss_pred ccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhcc-Cceeeeccccc
Confidence 77889999999999999999999999999888877666667789999999999999999999999999 67788888888
Q ss_pred ccccceecccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEecCCcccccCCCccccccccCCCCeeecC
Q 008895 344 ESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGYVGEPEVTSATLLPDGWMRTG 423 (549)
Q Consensus 344 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG 423 (549)
|.+...... ........+++|.|+++....+++.++++.++.++.|||+++|+.++.||++++..+...+..++||+||
T Consensus 334 ~~~~~~~~~-~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tG 412 (536)
T d1mdba_ 334 EGLVNYTRL-DDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG 412 (536)
T ss_dssp TSCEEECCT-TSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEE
T ss_pred ccccccccc-ccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccC
Confidence 876554442 2223334568899987666555555899999999999999999999999999999999999889999999
Q ss_pred ceEEEecCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHH
Q 008895 424 DLCYIDEDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEF 503 (549)
Q Consensus 424 D~~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~ 503 (549)
|++++++||++++.||+||++|++|++|+|.+||++|.+||+|.+|+|++.+++..++.++++|+++++ ..+.++++++
T Consensus 413 D~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~~l~~~ 491 (536)
T d1mdba_ 413 DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAF 491 (536)
T ss_dssp EEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCHHHHHHH
T ss_pred ccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888999999998765 4678999999
Q ss_pred HHhc-CCCCCcccEEEEeCccCCCCCCcccHHHHHcccCc
Q 008895 504 VARQ-VSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVP 542 (549)
Q Consensus 504 l~~~-l~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~~~ 542 (549)
++++ |++|++|+.|+++++||+|++|||+|++|++++.+
T Consensus 492 l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (536)
T d1mdba_ 492 LRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (536)
T ss_dssp HHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred HHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHH
Confidence 9875 99999999999999999999999999999998854
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.9e-67 Score=547.84 Aligned_cols=490 Identities=24% Similarity=0.335 Sum_probs=407.4
Q ss_pred CHHHHHhhcccCCCCCCCCCcEEEECCCCceecHHHHHHHHHHHHHHhHHhcCCCCCCEEEEEcCCCChHHHHHHHHHHc
Q 008895 39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118 (549)
Q Consensus 39 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~a~~~A~~L~~~~g~~~g~~V~i~~~~~~~~~v~~la~~~~ 118 (549)
|++++|.++|+++ ||++|+++...++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+++
T Consensus 3 ti~~~l~~~a~~~----pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (503)
T d3cw9a1 3 TVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRL 77 (503)
T ss_dssp CHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC----CCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHH-cCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 8999999999999 999999987667899999999999999999999 89999999999999999999999999999
Q ss_pred CCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCccHHH--Hh--cCCCeEEEecCCchhhhhcccCCCccccccccCCCCE
Q 008895 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHK--LA--KLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDV 194 (549)
Q Consensus 119 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (549)
|++++|++|.++.+++.+++++++++++|++...... +. ....+++.++....+. ...............++++
T Consensus 78 G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 155 (503)
T d3cw9a1 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDG--EPYSYGPPIEDPQREPAQP 155 (503)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEETT--EECCCSCCCCCCCCCTTSE
T ss_pred CcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhhh--cccccCCccccccchhhhh
Confidence 9999999999999999999999999999998764321 11 1233444332111000 0001111222334577899
Q ss_pred EEEEccCCCCCccchhhhcHHHHHHHHHHhhccCC-CCCCCcEEEEecChhhHHHH-HHHHHHhhhccEEEEecCcCHHH
Q 008895 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-KRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKM 272 (549)
Q Consensus 195 a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~ 272 (549)
++++|||||||.||+|.++|.++.+.......... .....++++..+|++|..+. ...+.+...++.++....+++..
T Consensus 156 a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (503)
T d3cw9a1 156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVD 235 (503)
T ss_dssp EEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHH
T ss_pred hhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccChHH
Confidence 99999999999999999999999988887766552 34666899999999887777 45667777888888888999999
Q ss_pred HHHHHHHhceeeeeecHHHHHHHHhCC--CCCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEcccCcccccccee
Q 008895 273 MLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350 (549)
Q Consensus 273 ~~~~l~~~~~t~l~~~P~~l~~l~~~~--~~~~~~l~~lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~ 350 (549)
+...+..+++++++.+|..+..+.... ......+++||.+++||++++++....+...+ +..+.+.||++|++..+.
T Consensus 236 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~ 314 (503)
T d3cw9a1 236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLY 314 (503)
T ss_dssp HHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEE
T ss_pred hhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-cccccccccccccceeee
Confidence 999999999999999999877665432 23344578999999999999999999999998 678999999999987766
Q ss_pred cccCcCCCCCCCccccccCCcEEEEEcCCCCCcCCCCCcceEEEec-CCcccccCCCccccccccCCCCeeecCceEEEe
Q 008895 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG-PTIMKGYVGEPEVTSATLLPDGWMRTGDLCYID 429 (549)
Q Consensus 351 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g-~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~ 429 (549)
...... ....+.+.+.+.....+ ..+.++.++.|+.|++.+.+ +....||++++..+.+.| .+|||+|||+|+++
T Consensus 315 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~ 390 (503)
T d3cw9a1 315 MRQPKT--GTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWT 390 (503)
T ss_dssp EESCSS--SSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEEC
T ss_pred eccccc--cccccccccccceeeee-ecccCcccCCCccccccccccccccccccCChhhhHHHh-cCCceecccccccc
Confidence 543222 22223333333333333 34778899999999887765 566778899998888887 68999999999999
Q ss_pred cCCeEEEEcccCCeeeeCcEeeChHHHHHHHHcCCCcceEEEEeecCCCCCceeEEEEEeCCCCCCCHHHHHHHHH-hcC
Q 008895 430 EDGFLFIVDRLKDLIKYKGYQVAPAELEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVA-RQV 508 (549)
Q Consensus 430 ~~g~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~l~-~~l 508 (549)
+||.+++.||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..++.+++||+++++...+.+++.++++ ++|
T Consensus 391 ~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l 470 (503)
T d3cw9a1 391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470 (503)
T ss_dssp TTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHSSS
T ss_pred cCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999888889999999998888889999999995 689
Q ss_pred CCCCcccEEEEeCccCCCCCCcccHHHHHccc
Q 008895 509 SPYKKIRRVAFINAIPKSAAGKILRMELRKVA 540 (549)
Q Consensus 509 ~~~~~p~~i~~v~~lP~t~~GKv~r~~l~~~~ 540 (549)
+.|++|+.|+++++||+|++|||+|++|++++
T Consensus 471 ~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 471 ADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp CGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred CCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 99999999999999999999999999999875
|